Citrus Sinensis ID: 003199

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840
Protein Sequence
MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccHHHHcccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccccccccccccEEccccccccEEEccccccccccccEEEcccccccccccHHcccccccccEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccccccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEccccccccccccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHccccccEEccccccEEEEEEcccccEEEEEEEEcccccccccccccccccHHHHHHHHHHccccccccccEEEEEEcccccEEEEcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEccccccccccHHHccccccEEEEccccccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEccccccccccHHHcccccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccEEEEEccccccccccHHHHccccccHEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccEEccccHHHHHHHccHccEEEccccEEEEEEEcccccEEEEEEcccccccccccccccccccccHHHHHHHHHHcccHHHHHHHEEccccccEEEEEEEcccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEccccccHHHHHcHHHEEccccccccccEEEEcccccccccHEEEEEEcccccHEHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccHHHcccHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msfmyltgtlpdfspmqnlrrldlsnnlftgqfplsvfnltnlevlsfnenpgfklwklpessifrlTKLRIMVLATCAlhgqipasignvtsltdleltgnfitghippeiglLKNLRQLELYYNQQlagtipeelgnlteltdldmsvnhlsgkipesilrlpkLRVLQLYNNSLSGEISSVIANSTTLTMLSLydnsltgevpqdlgqwsplvvldlsenklsgplpakvcsrgkLQYFLVLQNMFSGVLPDSLARCKNLLRFRvsnnhlegsipegilslphvsiidlsynsfsgpiantvgnarNLSELFMQRnqisgfipSEIYRAISLVKIdlsdnllsgpipsgignlKKLNLLMLQSnklnssipnslsslkslnvldlsnnlltgyipeslcellpnsinfsnnrlsgpiplslikeglvesfsgnpglcvsvsvnssdknfplcphtktrrrLSSIWAVVTSAVIIFIGLLLFLKRRFskqraitepdetlsssffpydvksfhrisFDQREILEAMTEknkvgqggsgtvykidlnsgeVVAVKKLWSqrtkvsasdtdqlqldKGLKTEVETlgnirhknIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGlvhldwptrhKIAFGVAQGLAYLHhgllspiihrdikstnilldvnyqpkvadFGIAKVLqarggkdstttviagtygylapeyaysskattkcdvYSFGVVLMELItgrkpveddfgdnknIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRctskspatrptMNEVVQLLAeadpcrfesckfpnksnkessnatkiknpsel
Flexible Loop (DISEMBL)
msfmyltgtlpdfspmqNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRaitepdetlsssffpydVKSFHRISFDQREILEAMteknkvgqggsgTVYKIDLNSGEVVAVKKLwsqrtkvsasdtdqlqldkglktevetlgnirhkniVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVlqarggkdstttvIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGrkpveddfgdnkNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIrctskspatrptMNEVVQLLAEADPCRFESckfpnksnkessnatkiknpsel
Low Complexity Region (SEG)
MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQsnklnssipnslsslkslnvldlsnnllTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL
Disordered region (IsUnstruct)
****YLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS*************LKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRAIT****TLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRT***********LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTS**********EVVQLLAEADPCRF*************************
Disordered Region (DISOPRED)
MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSV***********************IWAVVTSAVIIFIGLLLFLKRR**********************VKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTK**********LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL*********************************
Disordered Region (DISEMBL)
MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKL**************LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFP*******************
Disordered Region (DISPRO)
****YLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFP***HTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRAIT*********FFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQ***************KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	840	2.2.26 [Sep-21-2011]
Q9SGP2	996	Receptor-like protein kin	no	no	0.927	0.782	0.429	1e-180
P47735	999	Receptor-like protein kin	no	no	0.954	0.802	0.415	1e-166
Q9LJM4	991	Receptor-like protein kin	no	no	0.934	0.792	0.394	1e-162
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.954	0.791	0.384	1e-149
O49545	1003	Leucine-rich repeat recep	no	no	0.925	0.774	0.383	1e-147
C0LGX3	993	LRR receptor-like serine/	no	no	0.921	0.779	0.380	1e-146
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.914	0.766	0.378	1e-142
Q9FII5	1041	Leucine-rich repeat recep	no	no	0.947	0.764	0.358	1e-142
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.927	0.707	0.381	1e-139
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.951	0.776	0.373	1e-139

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score =  632 bits (1629), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 362/843 (42%), Positives = 505/843 (59%), Gaps = 64/843 (7%)

Query: 6   LTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
            +G +P  F   +NL  L L  NL  G  P  + N++ L++L+ + NP F   ++P    
Sbjct: 144 FSGDIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNP-FSPSRIP-PEF 201

Query: 65  FRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELY 124
             LT L +M L  C L GQIP S+G ++ L DL+L  N + GHIPP +G L N+ Q+ELY
Sbjct: 202 GNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHIPPSLGGLTNVVQIELY 261

Query: 125 YNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
            N  L G IP ELGNL  L  LD S+N L+GKIP+ + R+P L  L LY N+L GE+ + 
Sbjct: 262 -NNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDELCRVP-LESLNLYENNLEGELPAS 319

Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           IA S  L  + ++ N LTG +P+DLG  SPL  LD+SEN+ SG LPA +C++G+L+  L+
Sbjct: 320 IALSPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSENEFSGDLPADLCAKGELEELLI 379

Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
           + N FSGV+P+SLA C++L R R++ N   GS+P G   LPHV++++L  NSFSG I+ +
Sbjct: 380 IHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLPHVNLLELVNNSFSGEISKS 439

Query: 305 VGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIP-------------- 350
           +G A NLS L +  N+ +G +P EI    +L ++  S N  SG +P              
Sbjct: 440 IGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASGNKFSGSLPDSLMSLGELGTLDL 499

Query: 351 ----------SGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPES 400
                     SGI + KKLN L L  N+    IP+ + SL  LN LDLS N+ +G IP S
Sbjct: 500 HGNQFSGELTSGIKSWKKLNELNLADNEFTGKIPDEIGSLSVLNYLDLSGNMFSGKIPVS 559

Query: 401 LCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKT 460
           L  L  N +N S NRLSG +P SL K+    SF GNPGLC  +          LC     
Sbjct: 560 LQSLKLNQLNLSYNRLSGDLPPSLAKDMYKNSFIGNPGLCGDIK--------GLCGSENE 611

Query: 461 RRRLSSIWAV----VTSAVIIFIGL--LLFLKRRFSKQRAITEPDETLSSSFFPYDVKSF 514
            ++   +W +    V +A+++  G+    F  R F K RA+     TL          SF
Sbjct: 612 AKKRGYVWLLRSIFVLAAMVLLAGVAWFYFKYRTFKKARAMERSKWTL---------MSF 662

Query: 515 HRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           H++ F + EILE++ E N +G G SG VYK+ L +GE VAVK+LW+   K +  D D  +
Sbjct: 663 HKLGFSEHEILESLDEDNVIGAGASGKVYKVVLTNGETVAVKRLWTGSVKETG-DCDPEK 721

Query: 575 ------LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH--KG 626
                  D+  + EVETLG IRHKNIVKL+C  S+  C LLVYEYMPNG+L D LH  KG
Sbjct: 722 GYKPGVQDEAFEAEVETLGKIRHKNIVKLWCCCSTRDCKLLVYEYMPNGSLGDLLHSSKG 781

Query: 627 LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            + L W TR KI    A+GL+YLHH  + PI+HRDIKS NIL+D +Y  +VADFG+AK +
Sbjct: 782 GM-LGWQTRFKIILDAAEGLSYLHHDSVPPIVHRDIKSNNILIDGDYGARVADFGVAKAV 840

Query: 687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
              G    + +VIAG+ GY+APEYAY+ +   K D+YSFGVV++E++T ++PV+ + G+ 
Sbjct: 841 DLTGKAPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILEIVTRKRPVDPELGE- 899

Query: 747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL 806
           K+++ WV   +D K GI  V+D KL   F++E+ ++L + + CTS  P  RP+M  VV++
Sbjct: 900 KDLVKWVCSTLDQK-GIEHVIDPKLDSCFKEEISKILNVGLLCTSPLPINRPSMRRVVKM 958

Query: 807 LAE 809
           L E
Sbjct: 959 LQE 961

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score =  585 bits (1508), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 357/860 (41%), Positives = 505/860 (58%), Gaps = 58/860 (6%)

Query: 6   LTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
           L+ T+P  F   + L  L+L+ N  +G  P S+ N+T L+ L    N  F   ++P S +
Sbjct: 151 LSDTIPSSFGEFRKLESLNLAGNFLSGTIPASLGNVTTLKELKLAYNL-FSPSQIP-SQL 208

Query: 65  FRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELY 124
             LT+L+++ LA C L G IP S+  +TSL +L+LT N +TG IP  I  LK + Q+EL+
Sbjct: 209 GNLTELQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKTVEQIELF 268

Query: 125 YNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
            N   +G +PE +GN+T L   D S+N L+GKIP+++  L  L  L L+ N L G +   
Sbjct: 269 -NNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNLNLL-NLESLNLFENMLEGPLPES 326

Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           I  S TL+ L L++N LTG +P  LG  SPL  +DLS N+ SG +PA VC  GKL+Y ++
Sbjct: 327 ITRSKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEGKLEYLIL 386

Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
           + N FSG + ++L +CK+L R R+SNN L G IP G   LP +S+++LS NSF+G I  T
Sbjct: 387 IDNSFSGEISNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKT 446

Query: 305 VGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLML 364
           +  A+NLS L + +N+ SG IP+EI     +++I  ++N  SG IP  +  LK+L+ L L
Sbjct: 447 IIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDL 506

Query: 365 QSNKLNSSIPNSLSSLKS------------------------LNVLDLSNNLLTGYIPES 400
             N+L+  IP  L   K+                        LN LDLS+N  +G IP  
Sbjct: 507 SKNQLSGEIPRELRGWKNLNELNLANNHLSGEIPKEVGILPVLNYLDLSSNQFSGEIPLE 566

Query: 401 LCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKT 460
           L  L  N +N S N LSG IP     +     F GNPGLCV +          LC     
Sbjct: 567 LQNLKLNVLNLSYNHLSGKIPPLYANKIYAHDFIGNPGLCVDLD--------GLCRKITR 618

Query: 461 RRRLSSIWAVVT----SAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHR 516
            + +  +W ++T    + ++  +G+++F+  +  K RA+     TL++S +    +SFH+
Sbjct: 619 SKNIGYVWILLTIFLLAGLVFVVGIVMFIA-KCRKLRALKS--STLAASKW----RSFHK 671

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKL-WSQRTKVSASDTDQLQL 575
           + F + EI + + EKN +G G SG VYK++L  GEVVAVKKL  S +       +D L  
Sbjct: 672 LHFSEHEIADCLDEKNVIGFGSSGKVYKVELRGGEVVAVKKLNKSVKGGDDEYSSDSLNR 731

Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH---KGLVHLDW 632
           D     EVETLG IRHK+IV+L+C  SS  C LLVYEYMPNG+L D LH   KG V L W
Sbjct: 732 DV-FAAEVETLGTIRHKSIVRLWCCCSSGDCKLLVYEYMPNGSLADVLHGDRKGGVVLGW 790

Query: 633 PTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
           P R +IA   A+GL+YLHH  + PI+HRD+KS+NILLD +Y  KVADFGIAKV Q  G K
Sbjct: 791 PERLRIALDAAEGLSYLHHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKVGQMSGSK 850

Query: 693 D-STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                + IAG+ GY+APEY Y+ +   K D+YSFGVVL+EL+TG++P + + GD K++  
Sbjct: 851 TPEAMSGIAGSCGYIAPEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSELGD-KDMAK 909

Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD 811
           WV   +D K G+  V+D KL   F++E+ +V+ I + CTS  P  RP+M +VV +L E  
Sbjct: 910 WVCTALD-KCGLEPVIDPKLDLKFKEEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVS 968

Query: 812 PCRFESCKFPNKSNKESSNA 831
                 C  PN S +  +  
Sbjct: 969 GAV--PCSSPNTSKRSKTGG 986

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJM4|IKU2_ARATH Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1

 Score =  573 bits (1477), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 337/855 (39%), Positives = 495/855 (57%), Gaps = 70/855 (8%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSI 64
            +G  P    +Q L  L L+ +  +G FP S   +L  L  LS  +N  F     P   I
Sbjct: 136 FSGEFPAIDSLQLLEFLSLNASGISGIFPWSSLKDLKRLSFLSVGDNR-FGSHPFPRE-I 193

Query: 65  FRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELY 124
             LT L+ + L+  ++ G+IP  I N+  L +LEL+ N I+G IP EI  LKNLRQLE+Y
Sbjct: 194 LNLTALQWVYLSNSSITGKIPEGIKNLVRLQNLELSDNQISGEIPKEIVQLKNLRQLEIY 253

Query: 125 YNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISS 183
            N  L G +P    NLT L + D S N L G + E  LR L  L  L ++ N L+GEI  
Sbjct: 254 SND-LTGKLPLGFRNLTNLRNFDASNNSLEGDLSE--LRFLKNLVSLGMFENRLTGEIPK 310

Query: 184 VIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFL 243
              +  +L  LSLY N LTG++P+ LG W+    +D+SEN L G +P  +C +G + + L
Sbjct: 311 EFGDFKSLAALSLYRNQLTGKLPRRLGSWTAFKYIDVSENFLEGQIPPYMCKKGVMTHLL 370

Query: 244 VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIAN 303
           +LQN F+G  P+S A+CK L+R RVSNN L G IP GI  LP++  +DL+ N F G +  
Sbjct: 371 MLQNRFTGQFPESYAKCKTLIRLRVSNNSLSGMIPSGIWGLPNLQFLDLASNYFEGNLTG 430

Query: 304 TVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLM 363
            +GNA++L  L +  N+ SG +P +I  A SLV ++L  N  SG +P   G LK+L+ L+
Sbjct: 431 DIGNAKSLGSLDLSNNRFSGSLPFQISGANSLVSVNLRMNKFSGIVPESFGKLKELSSLI 490

Query: 364 LQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPES----------------LCELLP- 406
           L  N L+ +IP SL    SL  L+ + N L+  IPES                L  ++P 
Sbjct: 491 LDQNNLSGAIPKSLGLCTSLVDLNFAGNSLSEEIPESLGSLKLLNSLNLSGNKLSGMIPV 550

Query: 407 -------NSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLC---- 455
                  + ++ SNN+L+G +P SL+      SF GN GLC     +S  +    C    
Sbjct: 551 GLSALKLSLLDLSNNQLTGSVPESLVS----GSFEGNSGLC-----SSKIRYLRPCPLGK 601

Query: 456 PHTKTRRR-LSSIWAVVTSAVIIFIGLL----LFLKRRFSKQRAITEPDETLSSSFFPYD 510
           PH++ +R+ LS +      A I+ +  L    +F  RR    + + + ++        + 
Sbjct: 602 PHSQGKRKHLSKVDMCFIVAAILALFFLFSYVIFKIRRDKLNKTVQKKND--------WQ 653

Query: 511 VKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDT 570
           V SF  ++F++ EI++ +  +N +G+GG G VYK+ L SGE +AVK +W   +   +  +
Sbjct: 654 VSSFRLLNFNEMEIIDEIKSENIIGRGGQGNVYKVSLRSGETLAVKHIWCPESSHESFRS 713

Query: 571 DQLQLDKG--------LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDA 622
               L  G         + EV TL NI+H N+VKL+C  +     LLVYEYMPNG+LW+ 
Sbjct: 714 STAMLSDGNNRSNNGEFEAEVATLSNIKHINVVKLFCSITCEDSKLLVYEYMPNGSLWEQ 773

Query: 623 LH--KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF 680
           LH  +G   + W  R  +A G A+GL YLHHGL  P+IHRD+KS+NILLD  ++P++ADF
Sbjct: 774 LHERRGEQEIGWRVRQALALGAAKGLEYLHHGLDRPVIHRDVKSSNILLDEEWRPRIADF 833

Query: 681 GIAKVLQARG-GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
           G+AK++QA    +D +  ++ GT GY+APEYAY++K   K DVYSFGVVLMEL+TG+KP+
Sbjct: 834 GLAKIIQADSVQRDFSAPLVKGTLGYIAPEYAYTTKVNEKSDVYSFGVVLMELVTGKKPL 893

Query: 740 EDDFGDNKNIIYWV-SIKVDT-KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR 797
           E DFG+N +I+ WV S+  +T +E +M+++D  +   ++++ ++VL IA+ CT KSP  R
Sbjct: 894 ETDFGENNDIVMWVWSVSKETNREMMMKLIDTSIEDEYKEDALKVLTIALLCTDKSPQAR 953

Query: 798 PTMNEVVQLLAEADP 812
           P M  VV +L + +P
Sbjct: 954 PFMKSVVSMLEKIEP 968

Modulates the seed size by negatively regulating the cellularization of syncytial endosperm.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  530 bits (1366), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 334/869 (38%), Positives = 490/869 (56%), Gaps = 67/869 (7%)

Query: 6   LTGTL-PDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
           L+G L  D   + +L  LDL  N F G  P S  NL  L  L  + N      +LP S +
Sbjct: 152 LSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNN--LTGELP-SVL 208

Query: 65  FRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELY 124
            +L  L   +L      G IP   GN+ SL  L+L    ++G IP E+G LK+L  L LY
Sbjct: 209 GQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLY 268

Query: 125 YNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
            N    GTIP E+G++T L  LD S N L+G+IP  I +L  L++L L  N LSG I   
Sbjct: 269 ENN-FTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIPPA 327

Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           I++   L +L L++N+L+GE+P DLG+ SPL  LD+S N  SG +P+ +C++G L   ++
Sbjct: 328 ISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGNLTKLIL 387

Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
             N F+G +P +L+ C++L+R R+ NN L GSIP G   L  +  ++L+ N  SG I   
Sbjct: 388 FNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGD 447

Query: 305 VGNARNLSELFMQRNQ------------------------ISGFIPSEIYRAISLVKIDL 340
           + ++ +LS +   RNQ                        ISG +P +     SL  +DL
Sbjct: 448 ISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDL 507

Query: 341 SDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPES 400
           S N L+G IPS I + +KL  L L++N L   IP  ++++ +L VLDLSNN LTG +PES
Sbjct: 508 SSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPES 567

Query: 401 L-----CELLPNSINFSNNRLSGPIPLS-LIKEGLVESFSGNPGLCVSVSVNSSDKNFPL 454
           +      ELL    N S N+L+GP+P++  +K    +   GN GLC  V    S      
Sbjct: 568 IGTSPALELL----NVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGVLPPCSKFQRAT 623

Query: 455 CPHTKTR-RRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRAITE--PDETLSSSFFPYDV 511
             H+    +R+ + W ++  A ++ +G+L  + R   K+        DET S   +P+ +
Sbjct: 624 SSHSSLHGKRIVAGW-LIGIASVLALGILTIVTRTLYKKWYSNGFCGDETASKGEWPWRL 682

Query: 512 KSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDT 570
            +FHR+ F   +IL  + E N +G G +G VYK +++ S  V+AVKKLW     +    T
Sbjct: 683 MAFHRLGFTASDILACIKESNMIGMGATGIVYKAEMSRSSTVLAVKKLWRSAADIEDGTT 742

Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH----KG 626
                      EV  LG +RH+NIV+L  +  +    ++VYE+M NGNL DA+H     G
Sbjct: 743 GDFV------GEVNLLGKLRHRNIVRLLGFLYNDKNMMIVYEFMLNGNLGDAIHGKNAAG 796

Query: 627 LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            + +DW +R+ IA GVA GLAYLHH    P+IHRDIKS NILLD N   ++ADFG+A+++
Sbjct: 797 RLLVDWVSRYNIALGVAHGLAYLHHDCHPPVIHRDIKSNNILLDANLDARIADFGLARMM 856

Query: 687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
            AR  K  T +++AG+YGY+APEY Y+ K   K D+YS+GVVL+EL+TGR+P+E +FG++
Sbjct: 857 -AR--KKETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGRRPLEPEFGES 913

Query: 747 KNIIYWVSIKVDTKEGIMEVLDKKLSGS--FRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
            +I+ WV  K+     + E LD  +      ++EM+ VL+IA+ CT+K P  RP+M +V+
Sbjct: 914 VDIVEWVRRKIRDNISLEEALDPNVGNCRYVQEEMLLVLQIALLCTTKLPKDRPSMRDVI 973

Query: 805 QLLAEADPCRFESCKFPNKSNKESSNATK 833
            +L EA P R        KSN    N ++
Sbjct: 974 SMLGEAKPRR--------KSNSNEENTSR 994

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  522 bits (1344), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 332/866 (38%), Positives = 465/866 (53%), Gaps = 89/866 (10%)

Query: 6   LTGTLPD--FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNEN-------PGFKL 56
             G+ PD   S + NLR LD+ NN  TG  P+SV NLT L  L    N       P +  
Sbjct: 129 FNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGS 188

Query: 57  WKLPE--------------SSIFRLTKLRIMVLATC-ALHGQIPASIGNVTSLTDLELTG 101
           W + E                I  LT LR + +    A    +P  IGN++ L   +   
Sbjct: 189 WPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGAN 248

Query: 102 NFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI 161
             +TG IPPEIG L+ L  L L  N   +G +  ELG L+ L  +D+S N  +G+IP S 
Sbjct: 249 CGLTGEIPPEIGKLQKLDTLFLQVNV-FSGPLTWELGTLSSLKSMDLSNNMFTGEIPASF 307

Query: 162 LRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLS 221
             L  L +L L+ N L GEI   I +   L +L L++N+ TG +PQ LG+   L ++DLS
Sbjct: 308 AELKNLTLLNLFRNKLHGEIPEFIGDLPELEVLQLWENNFTGSIPQKLGENGKLNLVDLS 367

Query: 222 ENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGI 281
            NKL+G LP  +CS  KL+  + L N   G +PDSL +C++L R R+  N L GSIP+G+
Sbjct: 368 SNKLTGTLPPNMCSGNKLETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGL 427

Query: 282 LSLPHVSIID------------------------LSYNSFSGPIANTVGNARNLSELFMQ 317
             LP ++ ++                        LS N  SGP+   +GN   + +L + 
Sbjct: 428 FGLPKLTQVELQDNYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLD 487

Query: 318 RNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSL 377
            N+  G IPSE+ +   L KID S NL SG I   I   K L  + L  N+L+  IPN +
Sbjct: 488 GNKFQGPIPSEVGKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEI 547

Query: 378 SSLKSLNVLDLSNNLLTGYIPESLCELLP-NSINFSNNRLSGPIP-LSLIKEGLVESFSG 435
           +++K LN L+LS N L G IP S+  +    S++FS N LSG +P           SF G
Sbjct: 548 TAMKILNYLNLSRNHLVGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLG 607

Query: 436 NPGLC----------VSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFL 485
           NP LC          V+   + S    PL    K    L  +   +  AV+  I      
Sbjct: 608 NPDLCGPYLGPCKDGVAKGGHQSHSKGPLSASMKLLLVLGLLVCSIAFAVVAII------ 661

Query: 486 KRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI 545
                K R++ +  E+ +     + + +F R+ F   ++L+++ E N +G+GG+G VYK 
Sbjct: 662 -----KARSLKKASESRA-----WRLTAFQRLDFTCDDVLDSLKEDNIIGKGGAGIVYKG 711

Query: 546 DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY 605
            + +G++VAVK+L +     S         D G   E++TLG IRH++IV+L  + S+  
Sbjct: 712 VMPNGDLVAVKRLAAMSRGSSH--------DHGFNAEIQTLGRIRHRHIVRLLGFCSNHE 763

Query: 606 CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKS 664
            NLLVYEYMPNG+L + LH K   HL W TR+KIA   A+GL YLHH     I+HRD+KS
Sbjct: 764 TNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIALEAAKGLCYLHHDCSPLIVHRDVKS 823

Query: 665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYS 724
            NILLD N++  VADFG+AK LQ  G  +   + IAG+YGY+APEYAY+ K   K DVYS
Sbjct: 824 NNILLDSNFEAHVADFGLAKFLQDSGTSE-CMSAIAGSYGYIAPEYAYTLKVDEKSDVYS 882

Query: 725 FGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT-KEGIMEVLDKKLSGSFRDEMIQVL 783
           FGVVL+EL+TGRKPV  +FGD  +I+ WV    D+ K+ +++VLD +LS     E+  V 
Sbjct: 883 FGVVLLELVTGRKPV-GEFGDGVDIVQWVRKMTDSNKDSVLKVLDPRLSSIPIHEVTHVF 941

Query: 784 RIAIRCTSKSPATRPTMNEVVQLLAE 809
            +A+ C  +    RPTM EVVQ+L E
Sbjct: 942 YVAMLCVEEQAVERPTMREVVQILTE 967

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score =  520 bits (1338), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 336/884 (38%), Positives = 480/884 (54%), Gaps = 110/884 (12%)

Query: 6   LTGTLPDFSP-MQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENP------------ 52
            +G LP+FSP  + LR L+L +NLFTG+ P S   LT L+VL+ N NP            
Sbjct: 135 FSGKLPEFSPEFRKLRVLELESNLFTGEIPQSYGRLTALQVLNLNGNPLSGIVPAFLGYL 194

Query: 53  -----------GFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTG 101
                       F    +P S++  L+ L  + L    L G+IP SI N+  L +L+L  
Sbjct: 195 TELTRLDLAYISFDPSPIP-STLGNLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLAM 253

Query: 102 NFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI 161
           N +TG IP  IG L+++ Q+ELY N+ L+G +PE +GNLTEL + D+S N+L+G++PE I
Sbjct: 254 NSLTGEIPESIGRLESVYQIELYDNR-LSGKLPESIGNLTELRNFDVSQNNLTGELPEKI 312

Query: 162 LRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLS 221
             L +L    L +N  +G +  V+A +  L    +++NS TG +P++LG++S +   D+S
Sbjct: 313 AAL-QLISFNLNDNFFTGGLPDVVALNPNLVEFKIFNNSFTGTLPRNLGKFSEISEFDVS 371

Query: 222 ENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGI 281
            N+ SG LP  +C R KLQ  +   N  SG +P+S   C +L   R+++N L G +P   
Sbjct: 372 TNRFSGELPPYLCYRRKLQKIITFSNQLSGEIPESYGDCHSLNYIRMADNKLSGEVPARF 431

Query: 282 LSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLS 341
             LP   +   + N   G I  ++  AR+LS+L +  N  SG IP ++     L  IDLS
Sbjct: 432 WELPLTRLELANNNQLQGSIPPSISKARHLSQLEISANNFSGVIPVKLCDLRDLRVIDLS 491

Query: 342 DNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESL 401
            N   G IPS I  LK L  + +Q N L+  IP+S+SS   L  L+LSNN L G IP  L
Sbjct: 492 RNSFLGSIPSCINKLKNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPEL 551

Query: 402 CEL-LPNSINFSNNRLSGPIPLSLIKEGLVE-----------------------SFSGNP 437
            +L + N ++ SNN+L+G IP  L++  L +                       SF GNP
Sbjct: 552 GDLPVLNYLDLSNNQLTGEIPAELLRLKLNQFNVSDNKLYGKIPSGFQQDIFRPSFLGNP 611

Query: 438 GLCVSVSVNSSDKNFPLCPHTKTRRRLS----SIWAVVTSAVIIFIGLLLFLKRRFSKQR 493
            LC      + D   P     +TR  L      I A+  + V +FI      KR+  +  
Sbjct: 612 NLCAP----NLDPIRPCRSKRETRYILPISILCIVALTGALVWLFIKTKPLFKRKPKRTN 667

Query: 494 AITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVV 553
            IT                 F R+ F + +I   +TE N +G GGSG VY++ L SG+ +
Sbjct: 668 KIT----------------IFQRVGFTEEDIYPQLTEDNIIGSGGSGLVYRVKLKSGQTL 711

Query: 554 AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEY 613
           AVKKLW +  + + S++         ++EVETLG +RH NIVKL    +      LVYE+
Sbjct: 712 AVKKLWGETGQKTESES-------VFRSEVETLGRVRHGNIVKLLMCCNGEEFRFLVYEF 764

Query: 614 MPNGNLWDALHKGLVH-----LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNIL 668
           M NG+L D LH    H     LDW TR  IA G AQGL+YLHH  + PI+HRD+KS NIL
Sbjct: 765 MENGSLGDVLHSEKEHRAVSPLDWTTRFSIAVGAAQGLSYLHHDSVPPIVHRDVKSNNIL 824

Query: 669 LDVNYQPKVADFGIAKVLQAR---GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSF 725
           LD   +P+VADFG+AK L+     G  D + + +AG+YGY+APEY Y+SK   K DVYSF
Sbjct: 825 LDHEMKPRVADFGLAKPLKREDNDGVSDVSMSCVAGSYGYIAPEYGYTSKVNEKSDVYSF 884

Query: 726 GVVLMELITGRKPVEDDFGDNKNIIYWVSIKV------DTKEGIM------------EVL 767
           GVVL+ELITG++P +  FG+NK+I+ +             ++G M            +++
Sbjct: 885 GVVLLELITGKRPNDSSFGENKDIVKFAMEAALCYPSPSAEDGAMNQDSLGNYRDLSKLV 944

Query: 768 DKKLSGSFR--DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           D K+  S R  +E+ +VL +A+ CTS  P  RPTM +VV+LL E
Sbjct: 945 DPKMKLSTREYEEIEKVLDVALLCTSSFPINRPTMRKVVELLKE 988

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  506 bits (1304), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 335/884 (37%), Positives = 466/884 (52%), Gaps = 116/884 (13%)

Query: 11  PDFSPMQNLRRLDLSNNLFTGQFPLSVFN-LTNLEVLS-FNENPGFKLWKLPESSIFRLT 68
           P  S +  LR L+LSNN+F G FP  + + L NL VL  +N N       LP  S+  LT
Sbjct: 111 PQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNN---LTGDLP-VSLTNLT 166

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL-YYN- 126
           +LR + L      G+IPA+ G    L  L ++GN +TG IPPEIG L  LR+L + YYN 
Sbjct: 167 QLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNA 226

Query: 127 ------------------------------------QQL----------AGTIPEELGNL 140
                                               Q+L           GTI +ELG +
Sbjct: 227 FENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLI 286

Query: 141 TELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNS 200
           + L  +D+S N  +G+IP S  +L  L +L L+ N L G I   I     L +L L++N+
Sbjct: 287 SSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENN 346

Query: 201 LTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARC 260
            TG +PQ LG+   LV+LDLS NKL+G LP  +CS  +L   + L N   G +PDSL +C
Sbjct: 347 FTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLGKC 406

Query: 261 KNLLRFRVSNNHLEGSIPEGILSLPHVSIID-------------------------LSYN 295
           ++L R R+  N L GSIP+ +  LP +S ++                         LS N
Sbjct: 407 ESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNN 466

Query: 296 SFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGN 355
             SG +   +GN   + +L +  N+ SG IP EI R   L K+D S NL SG I   I  
Sbjct: 467 QLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEISR 526

Query: 356 LKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLP-NSINFSNN 414
            K L  + L  N+L+  IPN L+ +K LN L+LS N L G IP ++  +    S++FS N
Sbjct: 527 CKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYN 586

Query: 415 RLSGPIP-LSLIKEGLVESFSGNPGLC------VSVSVNSSDKNFPLCPHTKTRRRLSSI 467
            LSG +P           SF GN  LC           + S    PL   TK    L  +
Sbjct: 587 NLSGLVPSTGQFSYFNYTSFVGNSHLCGPYLGPCGKGTHQSHVK-PLSATTKLLLVLGLL 645

Query: 468 WAVVTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEA 527
           +  +  A++  I           K R++    E  +     + + +F R+ F   ++L++
Sbjct: 646 FCSMVFAIVAII-----------KARSLRNASEAKA-----WRLTAFQRLDFTCDDVLDS 689

Query: 528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           + E N +G+GG+G VYK  +  G++VAVK+L +     S         D G   E++TLG
Sbjct: 690 LKEDNIIGKGGAGIVYKGTMPKGDLVAVKRLATMSHGSSH--------DHGFNAEIQTLG 741

Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGL 646
            IRH++IV+L  + S+   NLLVYEYMPNG+L + LH K   HL W TR+KIA   A+GL
Sbjct: 742 RIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWNTRYKIALEAAKGL 801

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            YLHH     I+HRD+KS NILLD N++  VADFG+AK LQ  G  +   + IAG+YGY+
Sbjct: 802 CYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSE-CMSAIAGSYGYI 860

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT-KEGIME 765
           APEYAY+ K   K DVYSFGVVL+ELITG+KPV  +FGD  +I+ WV    D+ K+ +++
Sbjct: 861 APEYAYTLKVDEKSDVYSFGVVLLELITGKKPV-GEFGDGVDIVQWVRSMTDSNKDCVLK 919

Query: 766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           V+D +LS     E+  V  +A+ C  +    RPTM EVVQ+L E
Sbjct: 920 VIDLRLSSVPVHEVTHVFYVALLCVEEQAVERPTMREVVQILTE 963

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FII5|TDR_ARATH Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1

 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 323/901 (35%), Positives = 478/901 (53%), Gaps = 105/901 (11%)

Query: 6    LTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVL-SFNENPGFKLWKLPESS 63
            L G+ P     +  L  LD+S N F   FP  +  L  L+V  +F+ N       L  S 
Sbjct: 117  LEGSFPTSIFDLTKLTTLDISRNSFDSSFPPGISKLKFLKVFNAFSNN----FEGLLPSD 172

Query: 64   IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL 123
            + RL  L  +        G+IPA+ G +  L  + L GN + G +PP +GLL  L+ +E+
Sbjct: 173  VSRLRFLEELNFGGSYFEGEIPAAYGGLQRLKFIHLAGNVLGGKLPPRLGLLTELQHMEI 232

Query: 124  YYNQ-----------------------QLAGTIPEELGNLTELTDLDMSVNHLSGKIPES 160
             YN                         L+G++P+ELGNL+ L  L +  N  +G+IPES
Sbjct: 233  GYNHFNGNIPSEFALLSNLKYFDVSNCSLSGSLPQELGNLSNLETLFLFQNGFTGEIPES 292

Query: 161  ILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ--------- 211
               L  L++L   +N LSG I S  +    LT LSL  N+L+GEVP+ +G+         
Sbjct: 293  YSNLKSLKLLDFSSNQLSGSIPSGFSTLKNLTWLSLISNNLSGEVPEGIGELPELTTLFL 352

Query: 212  WS---------------PLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS 256
            W+                L  +D+S N  +G +P+ +C   KL   ++  NMF G LP S
Sbjct: 353  WNNNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSSLCHGNKLYKLILFSNMFEGELPKS 412

Query: 257  LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFM 316
            L RC++L RFR  NN L G+IP G  SL +++ +DLS N F+  I      A  L  L +
Sbjct: 413  LTRCESLWRFRSQNNRLNGTIPIGFGSLRNLTFVDLSNNRFTDQIPADFATAPVLQYLNL 472

Query: 317  QRNQISGFIPSEIYRA-----------------------ISLVKIDLSDNLLSGPIPSGI 353
              N     +P  I++A                        S  +I+L  N L+G IP  I
Sbjct: 473  STNFFHRKLPENIWKAPNLQIFSASFSNLIGEIPNYVGCKSFYRIELQGNSLNGTIPWDI 532

Query: 354  GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESL-CELLPNSINFS 412
            G+ +KL  L L  N LN  IP  +S+L S+  +DLS+NLLTG IP          + N S
Sbjct: 533  GHCEKLLCLNLSQNHLNGIIPWEISTLPSIADVDLSHNLLTGTIPSDFGSSKTITTFNVS 592

Query: 413  NNRLSGPIPLSLIKEGLVESFSGNPGLC---VSVSVNS---SDKNFPLCPHTKTRRRLSS 466
             N+L GPIP           FS N GLC   V    NS   +  N  +  H K  R   +
Sbjct: 593  YNQLIGPIPSGSFAHLNPSFFSSNEGLCGDLVGKPCNSDRFNAGNADIDGHHKEERPKKT 652

Query: 467  IWAVV---TSAVIIFIGLLLFLKRRFSKQRA-ITEPDETLSSSFFPYDVKSFHRISFDQR 522
              A+V    +A+ +   +L+   R F K      +          P+ + +F R++F   
Sbjct: 653  AGAIVWILAAAIGVGFFVLVAATRCFQKSYGNRVDGGGRNGGDIGPWKLTAFQRLNFTAD 712

Query: 523  EILEAMTEKNKV-GQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK-GLK 580
            +++E +++ + + G G +GTVYK ++ +GE++AVKKLW +       +  +++  K G+ 
Sbjct: 713  DVVECLSKTDNILGMGSTGTVYKAEMPNGEIIAVKKLWGKN-----KENGKIRRRKSGVL 767

Query: 581  TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKG----LVHLDWPTRH 636
             EV+ LGN+RH+NIV+L    ++  C +L+YEYMPNG+L D LH G        +W   +
Sbjct: 768  AEVDVLGNVRHRNIVRLLGCCTNRDCTMLLYEYMPNGSLDDLLHGGDKTMTAAAEWTALY 827

Query: 637  KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
            +IA GVAQG+ YLHH     I+HRD+K +NILLD +++ +VADFG+AK++Q     D + 
Sbjct: 828  QIAIGVAQGICYLHHDCDPVIVHRDLKPSNILLDADFEARVADFGVAKLIQT----DESM 883

Query: 697  TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK 756
            +V+AG+YGY+APEYAY+ +   K D+YS+GV+L+E+ITG++ VE +FG+  +I+ WV  K
Sbjct: 884  SVVAGSYGYIAPEYAYTLQVDKKSDIYSYGVILLEIITGKRSVEPEFGEGNSIVDWVRSK 943

Query: 757  VDTKEGIMEVLDKKLSGS---FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC 813
            + TKE + EVLDK +  S    R+EM Q+LRIA+ CTS+SP  RP M +V+ +L EA P 
Sbjct: 944  LKTKEDVEEVLDKSMGRSCSLIREEMKQMLRIALLCTSRSPTDRPPMRDVLLILQEAKPK 1003

Query: 814  R 814
            R
Sbjct: 1004 R 1004

Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  497 bits (1280), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 335/879 (38%), Positives = 484/879 (55%), Gaps = 100/879 (11%)

Query: 6    LTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
            L G+LP     +QNL  L L  N  +G+ P SV N++ LEVL+ +EN  +    +P   I
Sbjct: 223  LEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHEN--YFTGSIPRE-I 279

Query: 65   FRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELY 124
             +LTK++ + L T  L G+IP  IGN+    +++ + N +TG IP E G + NL+ L L+
Sbjct: 280  GKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLF 339

Query: 125  YNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
             N  L G IP ELG LT L  LD+S+N L+G IP+ +  LP L  LQL++N L G+I  +
Sbjct: 340  ENI-LLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPL 398

Query: 185  I------------ANS------------TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDL 220
            I            ANS             TL +LSL  N L+G +P+DL     L  L L
Sbjct: 399  IGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLML 458

Query: 221  SENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEG 280
             +N+L+G LP ++ +   L    + QN  SG +   L + KNL R R++NN+  G IP  
Sbjct: 459  GDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPE 518

Query: 281  ILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDL 340
            I +L  +   ++S N  +G I   +G+   +  L +  N+ SG+I  E+ + + L  + L
Sbjct: 519  IGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRL 578

Query: 341  SDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNV-LDLSNNLLTGYIPE 399
            SDN L+G IP   G+L +L  L L  N L+ +IP  L  L SL + L++S+N L+G IP+
Sbjct: 579  SDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPD 638

Query: 400  SLCEL----------------LPNSI---------NFSNNRLSGPIPLSLIKEGLVES-F 433
            SL  L                +P SI         N SNN L G +P + + + +  S F
Sbjct: 639  SLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNF 698

Query: 434  SGNPGLCVSVSVNSSDKNFPLCPHTKT----------RRRLSSIWAVVTSAV--IIFIGL 481
            +GN GLC S   +      PL PH+ +          R+++ +I  +V  +V  I F+GL
Sbjct: 699  AGNHGLCNSQRSHCQ----PLVPHSDSKLNWLINGSQRQKILTITCIVIGSVFLITFLGL 754

Query: 482  LLFLKRR---FSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGG 538
               +KRR   F      T+PD  + S +FP    ++  +    R   E +     +G+G 
Sbjct: 755  CWTIKRREPAFVALEDQTKPD-VMDSYYFPKKGFTYQGLVDATRNFSEDVV----LGRGA 809

Query: 539  SGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY 598
             GTVYK +++ GEV+AVKKL S+    S+        D   + E+ TLG IRH+NIVKLY
Sbjct: 810  CGTVYKAEMSGGEVIAVKKLNSRGEGASS--------DNSFRAEISTLGKIRHRNIVKLY 861

Query: 599  CYFSSLYCNLLVYEYMPNGNLWDALHKGLVH--LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
             +      NLL+YEYM  G+L + L +G  +  LDW  R++IA G A+GL YLHH     
Sbjct: 862  GFCYHQNSNLLLYEYMSKGSLGEQLQRGEKNCLLDWNARYRIALGAAEGLCYLHHDCRPQ 921

Query: 657  IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            I+HRDIKS NILLD  +Q  V DFG+AK++     K  + + +AG+YGY+APEYAY+ K 
Sbjct: 922  IVHRDIKSNNILLDERFQAHVGDFGLAKLIDLSYSK--SMSAVAGSYGYIAPEYAYTMKV 979

Query: 717  TTKCDVYSFGVVLMELITGRKPVE--DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGS 774
            T KCD+YSFGVVL+ELITG+ PV+  +  GD   ++ WV   +      +E+ D +L  +
Sbjct: 980  TEKCDIYSFGVVLLELITGKPPVQPLEQGGD---LVNWVRRSIRNMIPTIEMFDARLDTN 1036

Query: 775  FR---DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
             +    EM  VL+IA+ CTS SPA+RPTM EVV ++ EA
Sbjct: 1037 DKRTVHEMSLVLKIALFCTSNSPASRPTMREVVAMITEA 1075

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  496 bits (1277), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 324/867 (37%), Positives = 473/867 (54%), Gaps = 68/867 (7%)

Query: 6    LTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFN-ENPGFKLWKLPESS 63
             +G LP D      L  LD     F G  P S  NL NL+ L  +  N G K+ K+    
Sbjct: 161  FSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKV---- 216

Query: 64   IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL 123
            I  L+ L  ++L      G+IP   G +T L  L+L    +TG IP  +G LK L  + L
Sbjct: 217  IGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYL 276

Query: 124  YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS 183
            Y N+ L G +P ELG +T L  LD+S N ++G+IP  +  L  L++L L  N L+G I S
Sbjct: 277  YQNR-LTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNLMRNQLTGIIPS 335

Query: 184  VIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFL 243
             IA    L +L L+ NSL G +P  LG+ SPL  LD+S NKLSG +P+ +C    L   +
Sbjct: 336  KIAELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGDIPSGLCYSRNLTKLI 395

Query: 244  VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIAN 303
            +  N FSG +P+ +  C  L+R R+  NH+ GSIP G   LP +  ++L+ N+ +G I +
Sbjct: 396  LFNNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDLPMLQHLELAKNNLTGKIPD 455

Query: 304  TVG-----------------------NARNLSELFMQRNQISGFIPSEIYRAISLVKIDL 340
             +                        ++ NL       N  +G IP++I    SL  +DL
Sbjct: 456  DIALSTSLSFIDISFNHLSSLSSSIFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDL 515

Query: 341  SDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPES 400
            S N  SG IP  I + +KL  L L+SN+L   IP +L+ +  L VLDLSNN LTG IP  
Sbjct: 516  SFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPAD 575

Query: 401  L-----CELLPNSINFSNNRLSGPIPLSLIKEGL-VESFSGNPGLCVSVSVNSSDKNFPL 454
            L      E+L    N S N+L GPIP +++   +  +   GN GLC  V +    K+  L
Sbjct: 576  LGASPTLEML----NVSFNKLDGPIPSNMLFAAIDPKDLVGNNGLCGGV-LPPCSKSLAL 630

Query: 455  CPHTKTRRRLSSIWAV----VTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSF---- 506
                +   R+    AV    V ++VI+ +G++ FL  R+   R     +      F    
Sbjct: 631  SAKGRNPGRIHVNHAVFGFIVGTSVIVAMGMM-FLAGRWIYTRWDLYSNFAREYIFCKKP 689

Query: 507  ---FPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEV--VAVKKLW-- 559
               +P+ + +F R+ F   +IL  + E N +G G  G VYK ++    +  VAVKKLW  
Sbjct: 690  REEWPWRLVAFQRLCFTAGDILSHIKESNIIGMGAIGIVYKAEVMRRPLLTVAVKKLWRS 749

Query: 560  -SQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGN 618
             S +  +     ++ + D  L+ EV  LG +RH+NIVK+  Y  +    ++VYEYMPNGN
Sbjct: 750  PSPQNDIEDHHQEEDEEDDILR-EVNLLGGLRHRNIVKILGYVHNEREVMMVYEYMPNGN 808

Query: 619  LWDALH---KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP 675
            L  ALH   +  +  DW +R+ +A GV QGL YLH+    PIIHRDIKS NILLD N + 
Sbjct: 809  LGTALHSKDEKFLLRDWLSRYNVAVGVVQGLNYLHNDCYPPIIHRDIKSNNILLDSNLEA 868

Query: 676  KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            ++ADFG+AK++     K+ T +++AG+YGY+APEY Y+ K   K D+YS GVVL+EL+TG
Sbjct: 869  RIADFGLAKMMLH---KNETVSMVAGSYGYIAPEYGYTLKIDEKSDIYSLGVVLLELVTG 925

Query: 736  RKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR---DEMIQVLRIAIRCTSK 792
            + P++  F D+ +++ W+  KV   E + EV+D  ++G  +   +EM+  LRIA+ CT+K
Sbjct: 926  KMPIDPSFEDSIDVVEWIRRKVKKNESLEEVIDASIAGDCKHVIEEMLLALRIALLCTAK 985

Query: 793  SPATRPTMNEVVQLLAEADPCRFESCK 819
             P  RP++ +V+ +LAEA P R   C+
Sbjct: 986  LPKDRPSIRDVITMLAEAKPRRKSVCQ 1012

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	840
224063397	925	predicted protein [Populus trichocarpa]	0.996	0.904	0.771	0.0
255537886	956	receptor protein kinase, putative [Ricin	0.994	0.873	0.748	0.0
349504495	958	leucine rich repeat-containing protein [	0.988	0.866	0.759	0.0
209168629	957	putative leucine rich repeat transmembra	0.988	0.867	0.760	0.0
449437262	947	PREDICTED: receptor-like protein kinase	0.991	0.879	0.738	0.0
297795729	964	hypothetical protein ARALYDRAFT_495025 [	0.963	0.839	0.706	0.0
359492518	956	PREDICTED: receptor-like protein kinase	0.985	0.866	0.743	0.0
15240528	966	putative leucine-rich repeat transmembra	0.963	0.837	0.701	0.0
26450865	966	putative receptor protein kinase [Arabid	0.963	0.837	0.699	0.0
356510067	966	PREDICTED: receptor-like protein kinase	0.994	0.864	0.713	0.0

>gi|224063397|ref|XP_002301126.1| predicted protein [Populus trichocarpa] gi|222842852|gb|EEE80399.1| predicted protein [Populus trichocarpa]

 Score = 1299 bits (3362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/840 (77%), Positives = 732/840 (87%), Gaps = 3/840 (0%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
           +SF++ TGT PDFSP+++LR LD+S N FTG+FP+SV NL+NLEVL+FNEN G  LW+LP
Sbjct: 89  LSFLFATGTYPDFSPLKSLRILDVSYNRFTGEFPMSVTNLSNLEVLNFNENDGLHLWQLP 148

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           E+ I RLTKL+ M+L TC LHG IPASIGN+TSL DLEL+GNF++GHIP E+GLLKNL+Q
Sbjct: 149 EN-ISRLTKLKSMILTTCVLHGPIPASIGNMTSLVDLELSGNFLSGHIPVELGLLKNLQQ 207

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           LELYYN  L+G IPEE GNLTEL DLD+SVN L+GKIPES+ RLPKL VLQLYNNSLSGE
Sbjct: 208 LELYYNYHLSGNIPEEFGNLTELVDLDISVNKLTGKIPESVCRLPKLEVLQLYNNSLSGE 267

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I S IA+STTL +LS+YDN LTGEVPQDLG  S ++V+DLSEN+LSGPLP+ VC  GKL 
Sbjct: 268 IPSAIASSTTLRILSVYDNFLTGEVPQDLGHLSAMIVVDLSENRLSGPLPSDVCRGGKLL 327

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           YFLVL NMFSG LPDS A+CK LLRFR+S+NHLEGSIPEGIL LP VSIIDLSYN+FSGP
Sbjct: 328 YFLVLDNMFSGELPDSYAKCKTLLRFRLSHNHLEGSIPEGILGLPRVSIIDLSYNNFSGP 387

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
           I+NT+G ARNLSELF+Q N+ISG IP EI RAI+LVKIDLS NLL GPIPS IG LKKLN
Sbjct: 388 ISNTIGTARNLSELFVQSNKISGVIPPEISRAINLVKIDLSSNLLYGPIPSEIGYLKKLN 447

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPI 420
           LL+LQ NKLNSSIP SLS L+SLNVLDLSNNLLTG IPESL ELLPNSINFSNN LSGPI
Sbjct: 448 LLILQGNKLNSSIPKSLSLLRSLNVLDLSNNLLTGSIPESLSELLPNSINFSNNLLSGPI 507

Query: 421 PLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIG 480
           PLSLIK GLVESFSGNPGLCV V V+SSD++FP+C HT  R+RL+SIWA+  S  I+ +G
Sbjct: 508 PLSLIKGGLVESFSGNPGLCVPVYVDSSDQSFPMCSHTYNRKRLNSIWAIGISVAILTVG 567

Query: 481 LLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSG 540
            LLFLKR+FSK RA+ + DET +SSFF YDVKSFHRISFDQREILEAM +KN VG GGSG
Sbjct: 568 ALLFLKRQFSKDRAVKQHDETTASSFFSYDVKSFHRISFDQREILEAMVDKNIVGHGGSG 627

Query: 541 TVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY 600
           TVY+I+L+SGEVVAVK+LWS+++K S S+ DQL LDK LKTEV TLG+IRHKNIVKLYCY
Sbjct: 628 TVYRIELSSGEVVAVKRLWSRKSKDSGSE-DQLLLDKELKTEVGTLGSIRHKNIVKLYCY 686

Query: 601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHR 660
           FSS  CNLL+YEYMPNGNLWDALHKG +HL+WPTRH+IA GVAQGLAYLHH LL PIIHR
Sbjct: 687 FSSSDCNLLIYEYMPNGNLWDALHKGWIHLNWPTRHQIAVGVAQGLAYLHHDLLPPIIHR 746

Query: 661 DIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKC 720
           DIKSTNILLD NY+PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKC
Sbjct: 747 DIKSTNILLDANYRPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKC 806

Query: 721 DVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMI 780
           DVYSFGVVLMELITG+KPVE D+G++KNII  VS KVDTKEG+MEVLDK+LSGSFRDEMI
Sbjct: 807 DVYSFGVVLMELITGKKPVEADYGESKNIINLVSTKVDTKEGVMEVLDKRLSGSFRDEMI 866

Query: 781 QVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL 840
           QVLRIAIRCT K+PA RPTMNEVVQLL EA   R +S +  NKS KE+S+ TKIKN  E+
Sbjct: 867 QVLRIAIRCTYKTPALRPTMNEVVQLLIEAGQNRVDSFRSSNKS-KEASDVTKIKNQFEI 925

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537886|ref|XP_002510008.1| receptor protein kinase, putative [Ricinus communis] gi|223550709|gb|EEF52195.1| receptor protein kinase, putative [Ricinus communis]

 Score = 1253 bits (3243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/840 (74%), Positives = 718/840 (85%), Gaps = 5/840 (0%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
           +S +YL G +PDFSP+++LR LD+S N F   FP+SV NLTNLE L+FNEN     W+LP
Sbjct: 122 VSLLYLDGKIPDFSPLKSLRMLDMSYNNFRDDFPMSVTNLTNLEFLNFNENAELNYWELP 181

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           E+ I RLTKL+ M+L TC L+G IPA+IGN+TSL DLEL+GNF+TG IPPEIGLLKNL+Q
Sbjct: 182 EN-ISRLTKLKSMILTTCNLYGPIPATIGNMTSLIDLELSGNFLTGQIPPEIGLLKNLKQ 240

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           LELYYN  L+G+IPEELGNLTEL DLDMSVN L+G IP SI RLPKL VLQ YNNSL+GE
Sbjct: 241 LELYYNYHLSGSIPEELGNLTELVDLDMSVNKLTGNIPASICRLPKLEVLQFYNNSLTGE 300

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I S IA STTL +LSLYDNSLTGE+P +LGQ S +VVLD+SEN+LSGPLP +VCS GKL 
Sbjct: 301 IPSAIAESTTLRILSLYDNSLTGELPHNLGQLSGMVVLDVSENRLSGPLPTEVCSGGKLL 360

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           YFLVL NMFSG LP S A+CK LLRFRVS+N LEGSIPEG+L LPHVSIIDL YN+FSG 
Sbjct: 361 YFLVLDNMFSGGLPSSYAKCKTLLRFRVSHNRLEGSIPEGLLGLPHVSIIDLGYNNFSGS 420

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
           I+NT+  ARNLSELF+Q N+ISG +P EI  AI+LVKID+S+NLLSGP+P  IG L KLN
Sbjct: 421 ISNTIRTARNLSELFLQSNKISGVLPPEISGAINLVKIDVSNNLLSGPVPFQIGYLTKLN 480

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPI 420
           LLMLQ N LNSSIP+SLS LKSLNVLDLSNNLLTG +PESL  LLPNSI+FSNNRLSGPI
Sbjct: 481 LLMLQGNMLNSSIPDSLSFLKSLNVLDLSNNLLTGNVPESLSVLLPNSIDFSNNRLSGPI 540

Query: 421 PLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIG 480
           PL LIK GL+ESFSGNPGLCV + V  SD+NFP+C     R+RL+SIW +  S VI  +G
Sbjct: 541 PLPLIKGGLLESFSGNPGLCVPIYV-VSDQNFPVCSRRYNRKRLNSIWVIGISVVIFIVG 599

Query: 481 LLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSG 540
            L FLKR+ SK + +T  DET+SSSFF Y+VKSFHRISFDQ+EILE M EKNKVGQGGSG
Sbjct: 600 ALFFLKRKLSKDK-LTGRDETMSSSFFSYEVKSFHRISFDQQEILEGMIEKNKVGQGGSG 658

Query: 541 TVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY 600
           TVYKI+L+SGEV+AVK+LWS+R K SA + DQL  DKGLKTEVETLG+IRHKNIVKLYCY
Sbjct: 659 TVYKIELSSGEVIAVKRLWSKRNKDSAIE-DQLLPDKGLKTEVETLGSIRHKNIVKLYCY 717

Query: 601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHR 660
           FSS +C+LLVYEYMPNGNL DAL K  +HLDWPTRH+IA GVAQGLAYLHH LL+PIIHR
Sbjct: 718 FSSFHCSLLVYEYMPNGNLRDALDKNWIHLDWPTRHQIALGVAQGLAYLHHDLLTPIIHR 777

Query: 661 DIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKC 720
           DIKSTNILLDV+YQPKVADFGIAKVLQARGGKDST+TV+AGTYGY+APEYAYSSKATTKC
Sbjct: 778 DIKSTNILLDVSYQPKVADFGIAKVLQARGGKDSTSTVVAGTYGYIAPEYAYSSKATTKC 837

Query: 721 DVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMI 780
           DVYSFGVVLMELITG+KPVE+DFG+NKNI+ WVS KV+TKEG+MEVLDKKLSGSF +EMI
Sbjct: 838 DVYSFGVVLMELITGKKPVEEDFGENKNIVNWVSTKVETKEGVMEVLDKKLSGSFWNEMI 897

Query: 781 QVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL 840
           QVLRIAIRC  K+PA RPTMNEVVQLL EADPCRF+SCK  NK+ KE+SN TKI + +EL
Sbjct: 898 QVLRIAIRCICKTPAPRPTMNEVVQLLIEADPCRFDSCKSSNKA-KETSNVTKINSKNEL 956

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|349504495|gb|AEP84281.1| leucine rich repeat-containing protein [Corchorus capsularis]

 Score = 1232 bits (3188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/836 (75%), Positives = 716/836 (85%), Gaps = 6/836 (0%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
           MS +YL  T+PDFS M +LR LDLS NLF G FP+S+ NLTNLEVL  NEN     W+LP
Sbjct: 124 MSSVYLRATVPDFSRMTSLRVLDLSYNLFRGDFPMSITNLTNLEVLVSNENGELNPWQLP 183

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           E+ I RLTKL++MV +TC L+G+IPASIGN+TSL DLEL+GNF++G IP E+G+LKNL+ 
Sbjct: 184 EN-ISRLTKLKVMVFSTCMLYGRIPASIGNMTSLVDLELSGNFLSGQIPKELGMLKNLQG 242

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           LELYYNQ L+G IPEELGNLTEL DLDMSVN L G IPESI RLPKLRVLQ+YNNSL+GE
Sbjct: 243 LELYYNQHLSGIIPEELGNLTELRDLDMSVNQLRGSIPESICRLPKLRVLQIYNNSLTGE 302

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I  VIA STTLTMLSLY N L+G+VPQ+LG  SP++VLDLSEN L+G LP +VC  GKL 
Sbjct: 303 IPGVIAESTTLTMLSLYGNFLSGQVPQNLGHASPMIVLDLSENNLTGLLPTEVCRGGKLL 362

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           YFLVL NMFSG LP S A CK+LLRFRVS NHLEG IPEG+L LPHV+IIDL+YN+FSGP
Sbjct: 363 YFLVLDNMFSGKLPGSYANCKSLLRFRVSKNHLEGPIPEGLLGLPHVTIIDLAYNNFSGP 422

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
             N+VGNARNLSELF+Q N++SG IP EI RA +LVKIDLS+N+LSGPIPS +GNLK LN
Sbjct: 423 FPNSVGNARNLSELFVQNNKLSGVIPPEISRARNLVKIDLSNNVLSGPIPSEMGNLKYLN 482

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPI 420
           LLMLQ N+L+SSIP+SLS LK LNVLDLSNNLLTG IPESL  LLPNSINFSNN+LSGPI
Sbjct: 483 LLMLQGNQLSSSIPSSLSLLKLLNVLDLSNNLLTGNIPESLSALLPNSINFSNNKLSGPI 542

Query: 421 PLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIG 480
           PLSLIK GLVESFSGNPGLCV V V    +NFP+C HT  +++L+S+WA++ S ++I IG
Sbjct: 543 PLSLIKGGLVESFSGNPGLCVPVHV----QNFPICSHTYNQKKLNSMWAIIISIIVITIG 598

Query: 481 LLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSG 540
            LLFLKRRFSK RAI E DETLSSSFF YDVKSFHR+ FDQ EILEAM +KN VG GGSG
Sbjct: 599 ALLFLKRRFSKDRAIMEHDETLSSSFFSYDVKSFHRVCFDQHEILEAMVDKNIVGHGGSG 658

Query: 541 TVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY 600
           TVY+I+L SGEVVAVKKLW +  K SAS  DQL LDKGLKTEVETLG IRHKNIVKLY Y
Sbjct: 659 TVYRIELGSGEVVAVKKLWGRTEKDSAS-ADQLVLDKGLKTEVETLGCIRHKNIVKLYSY 717

Query: 601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHR 660
           FS+  CNLLVYEYMPNGNLWDALHKG + LDWPTRH+IA GVAQGLAYLHH LL PIIHR
Sbjct: 718 FSNFDCNLLVYEYMPNGNLWDALHKGWIILDWPTRHQIALGVAQGLAYLHHDLLPPIIHR 777

Query: 661 DIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKC 720
           DIKSTNILLDVNY+PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA+SSKATTKC
Sbjct: 778 DIKSTNILLDVNYRPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAFSSKATTKC 837

Query: 721 DVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMI 780
           DVYSFGVVLMELITG+KPVE DFG+NKNI+YW+S K+DTKEG+MEVLDK+LSGSFRDEMI
Sbjct: 838 DVYSFGVVLMELITGKKPVESDFGENKNIVYWISTKLDTKEGVMEVLDKQLSGSFRDEMI 897

Query: 781 QVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKN 836
           QVLRIA+RCT K+P+ RPTMNEVVQLL EADPCR +SCK  +   KE+SN TK+KN
Sbjct: 898 QVLRIAMRCTCKNPSQRPTMNEVVQLLIEADPCRLDSCKLTSNKTKEASNVTKVKN 953

Source: Corchorus capsularis

Species: Corchorus capsularis

Genus: Corchorus

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209168629|gb|ACI42311.1| putative leucine rich repeat transmembrane protein kinase [Corchorus olitorius]

 Score = 1229 bits (3179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/836 (76%), Positives = 714/836 (85%), Gaps = 6/836 (0%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
           MS +YL  T+PDFS M +LR LDLS NLF G FP+S+ NLTNLEVL  NEN     W+LP
Sbjct: 123 MSSVYLRTTVPDFSRMTSLRVLDLSYNLFRGDFPMSITNLTNLEVLVSNENGELNPWQLP 182

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           E+ I RLTKL++MV +TC L+G+IPASIGN+TSL DLEL+GNF++G IP E+G+LKNL+ 
Sbjct: 183 EN-ISRLTKLKVMVFSTCMLYGRIPASIGNMTSLVDLELSGNFLSGQIPKELGMLKNLQG 241

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           LELYYNQ L+GTIPEELGNLTEL DLDMSVN L G IPESI RLPKLRVLQ+YNNSL+GE
Sbjct: 242 LELYYNQHLSGTIPEELGNLTELRDLDMSVNQLRGSIPESICRLPKLRVLQIYNNSLTGE 301

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I  VIA STTLTMLSLY N L+G+VPQ+LG  SP++VLDLSEN L+G LP +VC  GKL 
Sbjct: 302 IPGVIAESTTLTMLSLYGNFLSGQVPQNLGHASPMIVLDLSENNLTGLLPTEVCRGGKLL 361

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           YFLVL NMF+G LP S A CK+LLRFRVSNNHLEG IPEG+L+LPHVSIIDL+YN+FSG 
Sbjct: 362 YFLVLDNMFTGKLPASYANCKSLLRFRVSNNHLEGPIPEGLLNLPHVSIIDLAYNNFSGT 421

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
             N  GNARNLSELFMQ N++SG IP EI RA +LVKIDLS+NLLSGPIPS +GNLK LN
Sbjct: 422 FPNEFGNARNLSELFMQNNKVSGVIPPEISRARNLVKIDLSNNLLSGPIPSEMGNLKYLN 481

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPI 420
           LLMLQ N+L+SSIP+SLS LK LNVLDLSNNLLTG IPESL  LLPNSINFSNN+LSGPI
Sbjct: 482 LLMLQGNQLSSSIPSSLSLLKLLNVLDLSNNLLTGNIPESLSALLPNSINFSNNKLSGPI 541

Query: 421 PLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIG 480
           PLSLIK GLVESFSGNPGLCV V V    +NFP+C HT  +++L+S+WA++ S ++I IG
Sbjct: 542 PLSLIKGGLVESFSGNPGLCVPVHV----QNFPICSHTYNQKKLNSMWAIIISIIVITIG 597

Query: 481 LLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSG 540
            LLFLKRRFSK RAI E DETLSSSFF YDVKSFHRI FDQ EILEAM +KN VG GGSG
Sbjct: 598 ALLFLKRRFSKDRAIMEHDETLSSSFFSYDVKSFHRICFDQHEILEAMVDKNIVGHGGSG 657

Query: 541 TVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY 600
           TVY+I+L SGEVVAVKKLW +  K SAS  DQL LDKGLKTEVETLG IRHKNIVKLY Y
Sbjct: 658 TVYRIELGSGEVVAVKKLWGRTEKDSAS-ADQLVLDKGLKTEVETLGCIRHKNIVKLYSY 716

Query: 601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHR 660
           FS+   NLLVYEYMPNGNLWDALHKG + LDWPTRH+IA GVAQGLAYLHH LL PIIHR
Sbjct: 717 FSNFDVNLLVYEYMPNGNLWDALHKGWIILDWPTRHQIALGVAQGLAYLHHDLLPPIIHR 776

Query: 661 DIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKC 720
           DIKSTNILLDVNY+PKVADFGIAKVLQA GGKDSTTTVIAGTYGYLAPEYA+SSKATTKC
Sbjct: 777 DIKSTNILLDVNYRPKVADFGIAKVLQATGGKDSTTTVIAGTYGYLAPEYAFSSKATTKC 836

Query: 721 DVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMI 780
           DVYSFGVVLMELITG+KPVE DFG+NKNI+YW+S K+DTKEG+MEVLDK+LSGSFRDEMI
Sbjct: 837 DVYSFGVVLMELITGKKPVEADFGENKNIVYWISTKLDTKEGVMEVLDKQLSGSFRDEMI 896

Query: 781 QVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKN 836
           QVLRIA+RCT K+P+ RPTMNEVVQLL EADPCR +SCK  +   KE+SN TK+KN
Sbjct: 897 QVLRIAMRCTCKNPSQRPTMNEVVQLLIEADPCRLDSCKLSSNKTKEASNVTKVKN 952

Source: Corchorus olitorius

Species: Corchorus olitorius

Genus: Corchorus

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437262|ref|XP_004136411.1| PREDICTED: receptor-like protein kinase HSL1-like [Cucumis sativus] gi|449516063|ref|XP_004165067.1| PREDICTED: receptor-like protein kinase HSL1-like [Cucumis sativus]

 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/840 (73%), Positives = 714/840 (85%), Gaps = 7/840 (0%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
           MS + L GTLPDFS ++ LR LDLS N FTG FPLSVF+LTNLE L+FNE+  FK W+LP
Sbjct: 115 MSSLSLMGTLPDFSSLKTLRILDLSYNNFTGDFPLSVFSLTNLESLNFNEDNNFKTWQLP 174

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           E+ +  LTKL+ MVL TC L G+IPA+IGN+T+L DLEL+GNF+TG IP EIG LKNLR 
Sbjct: 175 EN-VSGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPKEIGNLKNLRA 233

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           LELYYN  L G IPEELGNLTEL DLDMSVN L+GK+PESI RLPKL VLQLYNNSL+GE
Sbjct: 234 LELYYNS-LVGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQLYNNSLTGE 292

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I   I+NSTTLTMLSLYDN +TG+VP +LGQ+SP+VVLDLSEN  SGPLP  VC +GKL 
Sbjct: 293 IPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGQGKLM 352

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           YFLVL+N FSG +P S   C++LLRFRVS+N+LEG +P G+L LPHVSIID   N+ SG 
Sbjct: 353 YFLVLENKFSGQIPPSYGTCQSLLRFRVSSNNLEGPVPVGLLGLPHVSIIDFGNNNLSGE 412

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
           I N+   ARNLSELFMQ N+ISG +P EI +A +LVKIDLS+NLLSGPIPS IGNL+KLN
Sbjct: 413 IPNSFVKARNLSELFMQSNKISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLRKLN 472

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPI 420
           LL+LQ N LNSSIP SLS LKSLNVLDLS+N LTG IPESLCELLPNSINFSNN+LSGPI
Sbjct: 473 LLLLQGNHLNSSIPTSLSDLKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPI 532

Query: 421 PLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIG 480
           PLSLIK GLVESFSGNPGLCVSV +++SD+ FP+C     ++RL+SIWA+  SA II IG
Sbjct: 533 PLSLIKGGLVESFSGNPGLCVSVYLDASDQKFPICSQNNNKKRLNSIWAIGISAFIILIG 592

Query: 481 LLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSG 540
             L+L+RR S+++++ E DETLSSSFF YDVKSFHRISFD REI+E+M +KN VG GGSG
Sbjct: 593 AALYLRRRLSREKSVMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSG 652

Query: 541 TVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY 600
           TVYKI+L+SGE+VAVK+LWS++ K ++SD +QL LDK LKTEVETLG+IRHKNIVKLYCY
Sbjct: 653 TVYKIELSSGEMVAVKRLWSRKGKDTSSDQEQLYLDKELKTEVETLGSIRHKNIVKLYCY 712

Query: 601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHR 660
           FSSL C+LLVYEYMPNGNLWDALHKG +HLDWPTRH+IA G+AQGLAYLHH LL  IIHR
Sbjct: 713 FSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHR 772

Query: 661 DIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKC 720
           DIK+TNILLDVNY PKVADFGIAKVLQAR GKDSTTTVIAGTYGYLAPEYAYSSKATTKC
Sbjct: 773 DIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTVIAGTYGYLAPEYAYSSKATTKC 832

Query: 721 DVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMI 780
           DVYSFG+VLMELITG+KPVE +FG+NKNIIYWVS KVDTKEG MEVLDK++S SF+DEMI
Sbjct: 833 DVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSCSFKDEMI 892

Query: 781 QVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL 840
           +VLRIAIRCT K+PA RPTM EVVQLL EADPC+F+S    NKS+K ++  TKI NP +L
Sbjct: 893 EVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDS---HNKSSKHTT--TKINNPFDL 947

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795729|ref|XP_002865749.1| hypothetical protein ARALYDRAFT_495025 [Arabidopsis lyrata subsp. lyrata] gi|297311584|gb|EFH42008.1| hypothetical protein ARALYDRAFT_495025 [Arabidopsis lyrata subsp. lyrata]

 Score = 1166 bits (3016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/813 (70%), Positives = 678/813 (83%), Gaps = 4/813 (0%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
           MS +YL GTLPDFSPM++LR +D+S N FTG FP+S+FNLT+LE L+FNENP   LW LP
Sbjct: 127 MSSVYLKGTLPDFSPMKSLRVIDMSWNHFTGSFPISIFNLTDLEYLNFNENPELDLWTLP 186

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           +  + +LTKL  M+L TC LHG IP SIGN+TSL DLEL+GNF++G IP EIG L NLRQ
Sbjct: 187 DY-VSKLTKLTHMLLMTCMLHGNIPRSIGNLTSLVDLELSGNFLSGEIPKEIGNLSNLRQ 245

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           LELYYN  L G+IPEE+GNL  LTD+D+SV+ L+G IP+SI  LPKLRVLQLYNNSL+GE
Sbjct: 246 LELYYNYHLTGSIPEEIGNLKNLTDIDISVSRLTGSIPDSICSLPKLRVLQLYNNSLTGE 305

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I   +  S TL +LSLYDN LTGE+P +LG  SP++ LD+SEN+LSGPLPA VC  GKL 
Sbjct: 306 IPKSLGKSKTLKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLSGPLPAHVCKSGKLL 365

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           YFLVLQN F+G +P++   CK L+RFRV++NHL G IP+G++SLPHVSIIDL+YNS SGP
Sbjct: 366 YFLVLQNQFTGSIPETYGSCKTLIRFRVASNHLVGFIPQGVMSLPHVSIIDLAYNSLSGP 425

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
           I N +GNA NLSELFMQ N+ISGF+P EI  A +LVK+DLS+N LSGPIPS IG L+KLN
Sbjct: 426 IPNAIGNAWNLSELFMQGNRISGFLPHEISHATNLVKLDLSNNQLSGPIPSEIGRLRKLN 485

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPI 420
           LL+LQ N L+SSIP SLS+LKSLNVLDLS+NLLTG IPE L ELLP SINFS+NRLSGPI
Sbjct: 486 LLVLQGNHLDSSIPESLSNLKSLNVLDLSSNLLTGRIPEDLSELLPTSINFSSNRLSGPI 545

Query: 421 PLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFI- 479
           P+SLI+ GLVESFS NP LCV  +  SSD  FP+C   + +++LSSIWA++ S  I+ + 
Sbjct: 546 PVSLIRGGLVESFSDNPNLCVPPTAGSSDLKFPMCQEPRGKKKLSSIWAILVSVFILVLG 605

Query: 480 GLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGS 539
           G++ +L++R SK RA+ E DETL+SSFF YDVKSFHRISFDQREILEA+ +KN VG GGS
Sbjct: 606 GIMFYLRQRMSKNRAVIEQDETLASSFFSYDVKSFHRISFDQREILEALVDKNIVGHGGS 665

Query: 540 GTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC 599
           GTVY+++L SGEVVAVKKLWSQ +K SAS+ D++ L+K LKTEVETLG+IRHKNIVKL+ 
Sbjct: 666 GTVYRVELKSGEVVAVKKLWSQSSKDSASE-DKMHLNKELKTEVETLGSIRHKNIVKLFS 724

Query: 600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIH 659
           YFSSL C+LLVYEYMPNGNLWDALHKG VHL+W TRH+IA GVAQGLAYLHH L  PIIH
Sbjct: 725 YFSSLDCSLLVYEYMPNGNLWDALHKGFVHLEWRTRHQIAVGVAQGLAYLHHDLSPPIIH 784

Query: 660 RDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK 719
           RDIKSTNILLDVNYQPKVADFGIAKVLQAR GKDSTTTV+AGTYGYLAPEYAYSSKAT K
Sbjct: 785 RDIKSTNILLDVNYQPKVADFGIAKVLQAR-GKDSTTTVMAGTYGYLAPEYAYSSKATIK 843

Query: 720 CDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM 779
           CDVYSFGVVLMELITG+KPV+  FG+NKNI+ WVS K+DTKEG++E LDK LS S + +M
Sbjct: 844 CDVYSFGVVLMELITGKKPVDSCFGENKNIVNWVSTKIDTKEGLIETLDKSLSESSKADM 903

Query: 780 IQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
           I  LR+AIRCTS++P  RPTMNEVVQLL +A P
Sbjct: 904 INALRVAIRCTSRTPTIRPTMNEVVQLLIDAAP 936

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492518|ref|XP_002283600.2| PREDICTED: receptor-like protein kinase HSL1-like [Vitis vinifera]

 Score = 1166 bits (3016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/833 (74%), Positives = 702/833 (84%), Gaps = 5/833 (0%)

Query: 8   GTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRL 67
           GTLPD SPM++LR LDLS NLFTG+FPLS+ NLTNLE + FNEN GF LW LPE  I RL
Sbjct: 129 GTLPDLSPMKSLRILDLSYNLFTGEFPLSITNLTNLEHIRFNENEGFNLWSLPED-ISRL 187

Query: 68  TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
           TKL+ M+L TC +HGQIP SIGN+TSL DL+L+GNF+ G IP E+GLLKNLR LELYYNQ
Sbjct: 188 TKLKSMILTTCMVHGQIPPSIGNMTSLVDLQLSGNFLNGQIPAELGLLKNLRLLELYYNQ 247

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIAN 187
            +AG IPEELGNLTEL DLDMSVN L+GKIPESI +LPKLRVLQ YNNSL+GEI   I N
Sbjct: 248 -IAGRIPEELGNLTELNDLDMSVNRLTGKIPESICKLPKLRVLQFYNNSLTGEIPEAIGN 306

Query: 188 STTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN 247
           ST L MLS+YDN LTG VP+ LGQWSP+++LDLSEN LSG LP +VC  G L YFLVL N
Sbjct: 307 STALAMLSIYDNFLTGGVPRSLGQWSPMILLDLSENHLSGELPTEVCKGGNLLYFLVLDN 366

Query: 248 MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGN 307
           MFSG LP++ A+C++LLRFRVSNN LEG IPEG+L LP VSI+DL +N+ +G I  T+G 
Sbjct: 367 MFSGKLPENYAKCESLLRFRVSNNRLEGPIPEGLLGLPRVSILDLGFNNLNGQIGKTIGT 426

Query: 308 ARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSN 367
           ARNLSELF+Q N+ISG +P EI +A +LVKIDLS+NLLSGPIPS IGNL KLNLL+LQ N
Sbjct: 427 ARNLSELFIQSNRISGALPPEISQATNLVKIDLSNNLLSGPIPSEIGNLNKLNLLLLQGN 486

Query: 368 KLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKE 427
           K NS+IP SLSSLKS+NVLDLSNN LTG IPESL ELLPNSINF+NN LSGPIPLSLI+ 
Sbjct: 487 KFNSAIPKSLSSLKSVNVLDLSNNRLTGKIPESLSELLPNSINFTNNLLSGPIPLSLIQG 546

Query: 428 GLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKR 487
           GL ESFSGNP LCVSV VNSSD NFP+C  T  R++L+ IW +  S+VI+ +G++LFLKR
Sbjct: 547 GLAESFSGNPHLCVSVYVNSSDSNFPICSQTDNRKKLNCIWVIGASSVIVIVGVVLFLKR 606

Query: 488 RFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDL 547
            FSKQRA+ E DE +SSSFF Y VKSFHRI+FD REI+EA+ +KN VG GGSGTVYKI+L
Sbjct: 607 WFSKQRAVMEHDENMSSSFFSYAVKSFHRINFDPREIIEALIDKNIVGHGGSGTVYKIEL 666

Query: 548 NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN 607
           ++GEVVAVKKLWSQ+TK SAS+ DQL L K LKTEVETLG+IRHKNIVKLY  FSS   +
Sbjct: 667 SNGEVVAVKKLWSQKTKDSASE-DQLFLVKELKTEVETLGSIRHKNIVKLYSCFSSSDSS 725

Query: 608 LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNI 667
           LLVYEYMPNGNLWDALH+G   LDWP RH+IA G+AQGLAYLHH LL PIIHRDIKSTNI
Sbjct: 726 LLVYEYMPNGNLWDALHRGRTLLDWPIRHRIALGIAQGLAYLHHDLLPPIIHRDIKSTNI 785

Query: 668 LLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGV 727
           LLD+NYQPKVADFGIAKVLQAR GKD TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGV
Sbjct: 786 LLDINYQPKVADFGIAKVLQAR-GKDFTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGV 844

Query: 728 VLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI 787
           VLMELITG+KPVE +FG+NKNIIYWV+ KV T EG MEVLDK+LSGSFRDEM+Q+LRI +
Sbjct: 845 VLMELITGKKPVEAEFGENKNIIYWVATKVGTMEGAMEVLDKRLSGSFRDEMLQMLRIGL 904

Query: 788 RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL 840
           RCTS SPA RPTMNEV QLL EADPCR +SCK   K+ KE+SN TK KNP EL
Sbjct: 905 RCTSSSPALRPTMNEVAQLLTEADPCRVDSCKLSCKT-KETSNVTKTKNPFEL 956

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240528|ref|NP_199777.1| putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana] gi|10177638|dbj|BAB10911.1| receptor protein kinase [Arabidopsis thaliana] gi|224589711|gb|ACN59387.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332008459|gb|AED95842.1| putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/813 (70%), Positives = 679/813 (83%), Gaps = 4/813 (0%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
           MS +YL GTLPDFS M++LR +D+S N FTG FPLS+FNLT+LE L+FNENP   LW LP
Sbjct: 129 MSSVYLKGTLPDFSQMKSLRVIDMSWNHFTGSFPLSIFNLTDLEYLNFNENPELDLWTLP 188

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           +S + +LTKL  M+L TC LHG IP SIGN+TSL DLEL+GNF++G IP EIG L NLRQ
Sbjct: 189 DS-VSKLTKLTHMLLMTCMLHGNIPRSIGNLTSLVDLELSGNFLSGEIPKEIGNLSNLRQ 247

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           LELYYN  L G+IPEE+GNL  LTD+D+SV+ L+G IP+SI  LP LRVLQLYNNSL+GE
Sbjct: 248 LELYYNYHLTGSIPEEIGNLKNLTDIDISVSRLTGSIPDSICSLPNLRVLQLYNNSLTGE 307

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I   + NS TL +LSLYDN LTGE+P +LG  SP++ LD+SEN+LSGPLPA VC  GKL 
Sbjct: 308 IPKSLGNSKTLKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLSGPLPAHVCKSGKLL 367

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           YFLVLQN F+G +P++   CK L+RFRV++N L G+IP+G++SLPHVSIIDL+YNS SGP
Sbjct: 368 YFLVLQNRFTGSIPETYGSCKTLIRFRVASNRLVGTIPQGVMSLPHVSIIDLAYNSLSGP 427

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
           I N +GNA NLSELFMQ N+ISG IP E+  + +LVK+DLS+N LSGPIPS +G L+KLN
Sbjct: 428 IPNAIGNAWNLSELFMQSNRISGVIPHELSHSTNLVKLDLSNNQLSGPIPSEVGRLRKLN 487

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPI 420
           LL+LQ N L+SSIP+SLS+LKSLNVLDLS+NLLTG IPE+L ELLP SINFS+NRLSGPI
Sbjct: 488 LLVLQGNHLDSSIPDSLSNLKSLNVLDLSSNLLTGRIPENLSELLPTSINFSSNRLSGPI 547

Query: 421 PLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIG 480
           P+SLI+ GLVESFS NP LC+  +  SSD  FP+C     +++LSSIWA++ S  I+ +G
Sbjct: 548 PVSLIRGGLVESFSDNPNLCIPPTAGSSDLKFPMCQEPHGKKKLSSIWAILVSVFILVLG 607

Query: 481 LLLF-LKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGS 539
           +++F L++R SK RA+ E DETL+SSFF YDVKSFHRISFDQREILE++ +KN VG GGS
Sbjct: 608 VIMFYLRQRMSKNRAVIEQDETLASSFFSYDVKSFHRISFDQREILESLVDKNIVGHGGS 667

Query: 540 GTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC 599
           GTVY+++L SGEVVAVKKLWSQ  K SAS+ D++ L+K LKTEVETLG+IRHKNIVKL+ 
Sbjct: 668 GTVYRVELKSGEVVAVKKLWSQSNKDSASE-DKMHLNKELKTEVETLGSIRHKNIVKLFS 726

Query: 600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIH 659
           YFSSL C+LLVYEYMPNGNLWDALHKG VHL+W TRH+IA GVAQGLAYLHH L  PIIH
Sbjct: 727 YFSSLDCSLLVYEYMPNGNLWDALHKGFVHLEWRTRHQIAVGVAQGLAYLHHDLSPPIIH 786

Query: 660 RDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK 719
           RDIKSTNILLDVNYQPKVADFGIAKVLQAR GKDSTTTV+AGTYGYLAPEYAYSSKAT K
Sbjct: 787 RDIKSTNILLDVNYQPKVADFGIAKVLQAR-GKDSTTTVMAGTYGYLAPEYAYSSKATIK 845

Query: 720 CDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM 779
           CDVYSFGVVLMELITG+KPV+  FG+NKNI+ WVS K+DTKEG++E LDK+LS S + +M
Sbjct: 846 CDVYSFGVVLMELITGKKPVDSCFGENKNIVNWVSTKIDTKEGLIETLDKRLSESSKADM 905

Query: 780 IQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
           I  LR+AIRCTS++P  RPTMNEVVQLL +A P
Sbjct: 906 INALRVAIRCTSRTPTIRPTMNEVVQLLIDATP 938

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26450865|dbj|BAC42540.1| putative receptor protein kinase [Arabidopsis thaliana]

 Score = 1158 bits (2996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/813 (69%), Positives = 679/813 (83%), Gaps = 4/813 (0%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
           MS +YL GTLPDFS M++LR +D+S N FTG FPLS+FNLT+LE L+FNENP   LW LP
Sbjct: 129 MSSVYLKGTLPDFSQMKSLRVIDMSWNHFTGSFPLSIFNLTDLEYLNFNENPELDLWTLP 188

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           +S + +LTKL  M+L TC LHG IP SIGN+TSL DLEL+GNF++G IP EIG L NLRQ
Sbjct: 189 DS-VSKLTKLTHMLLMTCMLHGNIPRSIGNLTSLVDLELSGNFLSGEIPKEIGNLSNLRQ 247

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           LELYYN  L G+IPEE+GNL  LTD+D+SV+ L+G IP+SI  LP LRVLQLYNNSL+GE
Sbjct: 248 LELYYNYHLTGSIPEEIGNLKNLTDIDISVSRLTGSIPDSICSLPNLRVLQLYNNSLTGE 307

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I   + NS TL +LSLYDN LTGE+P +LG  SP++ LD+SEN+LSGPLPA VC  GKL 
Sbjct: 308 IPKSLGNSKTLKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLSGPLPAHVCKSGKLL 367

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           YFLVLQN F+G +P++   CK L+RFRV++N L G+IP+G++SLPHVSIIDL+YNS SGP
Sbjct: 368 YFLVLQNRFTGSIPETYGSCKTLIRFRVASNRLVGTIPQGVMSLPHVSIIDLAYNSLSGP 427

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
           I N +GNA NLSELFMQ N+ISG IP E+  + +LVK+DLS+N LSGPIPS +G L+KLN
Sbjct: 428 IPNAIGNAWNLSELFMQSNRISGVIPHELSHSTNLVKLDLSNNQLSGPIPSEVGRLRKLN 487

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPI 420
           LL+LQ N L+SSIP+SLS+LKSLNVLDLS+NLLTG IPE+L ELLP SINFS+NRLSGPI
Sbjct: 488 LLVLQGNHLDSSIPDSLSNLKSLNVLDLSSNLLTGRIPENLSELLPTSINFSSNRLSGPI 547

Query: 421 PLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIG 480
           P+SLI+ GLVESFS NP LC+  +  SSD  FP+C     +++LSSIWA++ S  I+ +G
Sbjct: 548 PVSLIRGGLVESFSDNPNLCIPPTAGSSDLKFPMCQEPHGKKKLSSIWAILVSVFILVLG 607

Query: 481 LLLF-LKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGS 539
           +++F L++R SK +A+ E DETL+SSFF YDVKSFHRISFDQREILE++ +KN VG GGS
Sbjct: 608 VIMFYLRQRMSKNKAVIEQDETLASSFFSYDVKSFHRISFDQREILESLVDKNIVGHGGS 667

Query: 540 GTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC 599
           GTVY+++L SGEVVAVKKLWSQ  K SAS+ D++ L+K LKTEVETLG+IRHKNIVKL+ 
Sbjct: 668 GTVYRVELKSGEVVAVKKLWSQSNKDSASE-DKMHLNKELKTEVETLGSIRHKNIVKLFS 726

Query: 600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIH 659
           YFSSL C+LLVYEYMPNGNLWDALHKG VHL+W TRH+IA GVAQGLAYLHH L  PIIH
Sbjct: 727 YFSSLDCSLLVYEYMPNGNLWDALHKGFVHLEWRTRHQIAVGVAQGLAYLHHDLSPPIIH 786

Query: 660 RDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK 719
           RDIKSTNILLDVNYQPKVADFGIAKVLQAR GKDSTTTV+AGTYGYLAPEYAYSSKAT K
Sbjct: 787 RDIKSTNILLDVNYQPKVADFGIAKVLQAR-GKDSTTTVMAGTYGYLAPEYAYSSKATIK 845

Query: 720 CDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM 779
           CDVYSFGVVLMELITG+KPV+  FG+NKNI+ WVS K+DTKEG++E LDK+LS S + +M
Sbjct: 846 CDVYSFGVVLMELITGKKPVDSCFGENKNIVNWVSTKIDTKEGLIETLDKRLSESSKADM 905

Query: 780 IQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
           I  LR+AIRCTS++P  RPTMNEVVQLL +A P
Sbjct: 906 INALRVAIRCTSRTPTIRPTMNEVVQLLIDATP 938

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510067|ref|XP_003523762.1| PREDICTED: receptor-like protein kinase HSL1-like [Glycine max]

 Score = 1149 bits (2971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/845 (71%), Positives = 693/845 (82%), Gaps = 10/845 (1%)

Query: 1   MSFMYLTGTLPDFSPMQ-NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKL 59
           M+ M LTGTLPDFS ++ +LR LDLS N FTGQFP+SVFNLTNLE L+FNEN GF LW+L
Sbjct: 127 MNHMSLTGTLPDFSSLKKSLRVLDLSYNSFTGQFPMSVFNLTNLEELNFNENGGFNLWQL 186

Query: 60  PESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLR 119
           P + I RL KL++MVL TC +HGQIPASIGN+TSLTDLEL+GNF+TG IP E+G LKNL+
Sbjct: 187 P-ADIDRLKKLKVMVLTTCMVHGQIPASIGNITSLTDLELSGNFLTGQIPKELGQLKNLQ 245

Query: 120 QLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG 179
           QLELYYN  L G IPEELGNLTEL DLDMSVN  +G IP S+ RLPKL+VLQLYNNSL+G
Sbjct: 246 QLELYYNYHLVGNIPEELGNLTELVDLDMSVNKFTGSIPASVCRLPKLQVLQLYNNSLTG 305

Query: 180 EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKL 239
           EI   I NST L MLSLYDN L G VP+ LGQ+S +VVLDLSENK SGPLP +VC  G L
Sbjct: 306 EIPGAIENSTALRMLSLYDNFLVGHVPRKLGQFSGMVVLDLSENKFSGPLPTEVCKGGTL 365

Query: 240 QYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG 299
            YFLVL NMFSG +P S A C  LLRFRVSNN LEGSIP G+L+LPHVSIIDLS N+ +G
Sbjct: 366 GYFLVLDNMFSGEIPQSYANCMMLLRFRVSNNRLEGSIPAGLLALPHVSIIDLSNNNLTG 425

Query: 300 PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKL 359
           PI    GN+RNLSELF+QRN+ISG I   I RAI+LVKID S NLLSGPIPS IGNL+KL
Sbjct: 426 PIPEINGNSRNLSELFLQRNKISGVINPTISRAINLVKIDFSYNLLSGPIPSEIGNLRKL 485

Query: 360 NLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGP 419
           NLLMLQ NKLNSSIP SLSSL+SLN+LDLSNNLLTG IPESL  LLPNSINFS+N LSGP
Sbjct: 486 NLLMLQGNKLNSSIPGSLSSLESLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNLLSGP 545

Query: 420 IPLSLIKEGLVESFSGNPGLCV-SVSVNSSDKNFPLCPHTKTR-RRLSSIWAVVTSAVII 477
           IP  LIK GLVESF+GNPGLCV  V  NSSD  FP+C     + +R+++IW    S V+I
Sbjct: 546 IPPKLIKGGLVESFAGNPGLCVLPVYANSSDHKFPMCASAYYKSKRINTIWIAGVSVVLI 605

Query: 478 FIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQG 537
           FIG  LFLKRR SK  A  E ++TLSSSFF YDVKSFH+ISFDQREI+E++ +KN +G G
Sbjct: 606 FIGSALFLKRRCSKDTAAVEHEDTLSSSFFSYDVKSFHKISFDQREIVESLVDKNIMGHG 665

Query: 538 GSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKL 597
           GSGTVYKI+L SG++VAVK+LWS  +K SA + D+L +DK LK EVETLG+IRHKNIVKL
Sbjct: 666 GSGTVYKIELKSGDIVAVKRLWSHASKDSAPE-DRLFVDKALKAEVETLGSIRHKNIVKL 724

Query: 598 YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPI 657
           YC FSS  C+LLVYEYMPNGNLWD+LHKG + LDWPTR++IA G+AQGLAYLHH LL PI
Sbjct: 725 YCCFSSYDCSLLVYEYMPNGNLWDSLHKGWILLDWPTRYRIALGIAQGLAYLHHDLLLPI 784

Query: 658 IHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKAT 717
           IHRDIKSTNILLDV+ QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE+AYSS+AT
Sbjct: 785 IHRDIKSTNILLDVDNQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEFAYSSRAT 844

Query: 718 TKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM--EVLDKKLSGSF 775
           TKCDVYS+GV+LMEL+TG+KPVE +FG+N+NI++WVS KV+ KEG    EVLD KLS SF
Sbjct: 845 TKCDVYSYGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVLDPKLSCSF 904

Query: 776 RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIK 835
           +++MI+VLRIAIRCT K+P +RPTM EVVQLL EA+P   +SCK    S  + SN T IK
Sbjct: 905 KEDMIKVLRIAIRCTYKAPTSRPTMKEVVQLLIEAEPRGSDSCKL---STNDVSNVTVIK 961

Query: 836 NPSEL 840
            P EL
Sbjct: 962 KPYEL 966

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	840
TAIR|locus:2168907	966	XIP1 "XYLEM INTERMIXED WITH PH	0.963	0.837	0.674	1.6e-294
TAIR|locus:2024432	977	LRR XI-23 [Arabidopsis thalian	0.948	0.815	0.380	1.7e-137
TAIR|locus:2032553	996	HSL1 "HAESA-like 1" [Arabidops	0.932	0.786	0.379	2.3e-133
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.966	0.812	0.383	1e-130
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.964	0.799	0.361	2.6e-127
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.936	0.785	0.378	2.9e-126
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.964	0.807	0.368	9.9e-126
TAIR|locus:2169975	993	HSL2 "HAESA-like 2" [Arabidops	0.863	0.730	0.366	2.8e-122
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.942	0.704	0.366	5.2e-120
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.953	0.727	0.358	2.3e-119

TAIR|locus:2168907 XIP1 "XYLEM INTERMIXED WITH PHLOEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2828 (1000.6 bits), Expect = 1.6e-294, P = 1.6e-294
 Identities = 548/813 (67%), Positives = 653/813 (80%)

Query:     1 MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
             MS +YL GTLPDFS M++LR +D+S N FTG FPLS+FNLT+LE L+FNENP   LW LP
Sbjct:   129 MSSVYLKGTLPDFSQMKSLRVIDMSWNHFTGSFPLSIFNLTDLEYLNFNENPELDLWTLP 188

Query:    61 ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
             +S + +LTKL  M+L TC LHG IP SIGN+TSL DLEL+GNF++G IP EIG L NLRQ
Sbjct:   189 DS-VSKLTKLTHMLLMTCMLHGNIPRSIGNLTSLVDLELSGNFLSGEIPKEIGNLSNLRQ 247

Query:   121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
             LELYYN  L G+IPEE+GNL  LTD+D+SV+ L+G IP+SI  LP LRVLQLYNNSL+GE
Sbjct:   248 LELYYNYHLTGSIPEEIGNLKNLTDIDISVSRLTGSIPDSICSLPNLRVLQLYNNSLTGE 307

Query:   181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
             I   + NS TL +LSLYDN LTGE+P +LG  SP++ LD+SEN+LSGPLPA VC  GKL 
Sbjct:   308 IPKSLGNSKTLKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLSGPLPAHVCKSGKLL 367

Query:   241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
             YFLVLQN F+G +P++   CK L+RFRV++N L G+IP+G++SLPHVSIIDL+YNS SGP
Sbjct:   368 YFLVLQNRFTGSIPETYGSCKTLIRFRVASNRLVGTIPQGVMSLPHVSIIDLAYNSLSGP 427

Query:   301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
             I N +GNA NLSELFMQ N+ISG IP E+  + +LVK+DLS+N LSGPIPS +G L+KLN
Sbjct:   428 IPNAIGNAWNLSELFMQSNRISGVIPHELSHSTNLVKLDLSNNQLSGPIPSEVGRLRKLN 487

Query:   361 LLMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIPESLCELLPNSINFSNNRLSGPI 420
             LL+LQ                            TG IPE+L ELLP SINFS+NRLSGPI
Sbjct:   488 LLVLQGNHLDSSIPDSLSNLKSLNVLDLSSNLLTGRIPENLSELLPTSINFSSNRLSGPI 547

Query:   421 PLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIG 480
             P+SLI+ GLVESFS NP LC+  +  SSD  FP+C     +++LSSIWA++ S  I+ +G
Sbjct:   548 PVSLIRGGLVESFSDNPNLCIPPTAGSSDLKFPMCQEPHGKKKLSSIWAILVSVFILVLG 607

Query:   481 LLLF-LKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGS 539
             +++F L++R SK RA+ E DETL+SSFF YDVKSFHRISFDQREILE++ +KN VG GGS
Sbjct:   608 VIMFYLRQRMSKNRAVIEQDETLASSFFSYDVKSFHRISFDQREILESLVDKNIVGHGGS 667

Query:   540 GTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC 599
             GTVY+++L SGEVVAVKKLWSQ  K SAS+ D++ L+K LKTEVETLG+IRHKNIVKL+ 
Sbjct:   668 GTVYRVELKSGEVVAVKKLWSQSNKDSASE-DKMHLNKELKTEVETLGSIRHKNIVKLFS 726

Query:   600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIH 659
             YFSSL C+LLVYEYMPNGNLWDALHKG VHL+W TRH+IA GVAQGLAYLHH L  PIIH
Sbjct:   727 YFSSLDCSLLVYEYMPNGNLWDALHKGFVHLEWRTRHQIAVGVAQGLAYLHHDLSPPIIH 786

Query:   660 RDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK 719
             RDIKSTNILLDVNYQPKVADFGIAKVLQARG KDSTTTV+AGTYGYLAPEYAYSSKAT K
Sbjct:   787 RDIKSTNILLDVNYQPKVADFGIAKVLQARG-KDSTTTVMAGTYGYLAPEYAYSSKATIK 845

Query:   720 CDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM 779
             CDVYSFGVVLMELITG+KPV+  FG+NKNI+ WVS K+DTKEG++E LDK+LS S + +M
Sbjct:   846 CDVYSFGVVLMELITGKKPVDSCFGENKNIVNWVSTKIDTKEGLIETLDKRLSESSKADM 905

Query:   780 IQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
             I  LR+AIRCTS++P  RPTMNEVVQLL +A P
Sbjct:   906 INALRVAIRCTSRTPTIRPTMNEVVQLLIDATP 938

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2024432 LRR XI-23 [Arabidopsis thaliana (taxid:3702)]

 Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
 Identities = 316/831 (38%), Positives = 467/831 (56%)

Query:     1 MSFMYLTGT-LPDFSPMQNLRR------LDLSNNLF--TGQFPLSVFNLTNLEVLSFNEN 51
             + F+YL  +      P ++LR       L L +N F  T  FP+ V +L  L  L +  N
Sbjct:   146 LQFLYLNNSAFSGVFPWKSLRNATSLVVLSLGDNPFDATADFPVEVVSLKKLSWL-YLSN 204

Query:    52 PGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPE 111
                   K+P + I  LT+LR + ++   L G+IP+ I  +T+L  LEL  N +TG +P  
Sbjct:   205 CSIA-GKIPPA-IGDLTELRNLEISDSGLTGEIPSEISKLTNLWQLELYNNSLTGKLPTG 262

Query:   112 IGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ 171
              G LKNL  L+   N  L G +  EL +LT L  L M  N  SG+IP        L  L 
Sbjct:   263 FGNLKNLTYLDASTNL-LQGDL-SELRSLTNLVSLQMFENEFSGEIPLEFGEFKDLVNLS 320

Query:   172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPA 231
             LY N L+G +   + +      +   +N LTG +P D+ +   +  L L +N L+G +P 
Sbjct:   321 LYTNKLTGSLPQGLGSLADFDFIDASENLLTGPIPPDMCKNGKMKALLLLQNNLTGSIPE 380

Query:   232 KVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIID 291
                +   LQ F V +N  +G +P  L     L    +  N+ EG I   I +   +  + 
Sbjct:   381 SYANCLTLQRFRVSENNLNGTVPAGLWGLPKLEIIDIEMNNFEGPITADIKNGKMLGALY 440

Query:   292 LSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPS 351
             L +N  S  +   +G+  +L+++ +  N+ +G IPS I +   L  + +  N  SG IP 
Sbjct:   441 LGFNKLSDELPEEIGDTESLTKVELNNNRFTGKIPSSIGKLKGLSSLKMQSNGFSGEIPD 500

Query:   352 GIGNLKKLNLLMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIPESLCELLPNSINF 411
              IG+   L+ + +                             +G IPESL  L  + ++ 
Sbjct:   501 SIGSCSMLSDVNMAQNSISGEIPHTLGSLPTLNALNLSDNKLSGRIPESLSSLRLSLLDL 560

Query:   412 SNNRLSGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNF-PLCPHTKTRRRLSSIWAV 470
             SNNRLSG IPLSL       SF+GNPGLC S ++ S ++   P   H  TR     +  +
Sbjct:   561 SNNRLSGRIPLSLSSYN--GSFNGNPGLC-STTIKSFNRCINPSRSHGDTR---VFVLCI 614

Query:   471 VTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTE 530
             V   +I+   L+ FL   + K+   TE  E  S     + +KSF ++SF + +I++++ E
Sbjct:   615 VFGLLILLASLVFFL---YLKK---TEKKEGRSLKHESWSIKSFRKMSFTEDDIIDSIKE 668

Query:   531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASD-----TDQLQLDKGLKTEVET 585
             +N +G+GG G VY++ L  G+ VAVK +    T+ + S      T++    K  +TEV+T
Sbjct:   669 ENLIGRGGCGDVYRVVLGDGKEVAVKHIRCSSTQKNFSSAMPILTEREGRSKEFETEVQT 728

Query:   586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQ 644
             L +IRH N+VKLYC  +S   +LLVYEY+PNG+LWD LH     +L W TR+ IA G A+
Sbjct:   729 LSSIRHLNVVKLYCSITSDDSSLLVYEYLPNGSLWDMLHSCKKSNLGWETRYDIALGAAK 788

Query:   645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
             GL YLHHG   P+IHRD+KS+NILLD   +P++ADFG+AK+LQA  G   +T V+AGTYG
Sbjct:   789 GLEYLHHGYERPVIHRDVKSSNILLDEFLKPRIADFGLAKILQASNGGPESTHVVAGTYG 848

Query:   705 YLAP-EYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI 763
             Y+AP EY Y+SK T KCDVYSFGVVLMEL+TG+KP+E +FG++K+I+ WVS  + +KE +
Sbjct:   849 YIAPAEYGYASKVTEKCDVYSFGVVLMELVTGKKPIEAEFGESKDIVNWVSNNLKSKESV 908

Query:   764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR 814
             ME++DKK+   +R++ +++LRIAI CT++ P  RPTM  VVQ++ +A+PCR
Sbjct:   909 MEIVDKKIGEMYREDAVKMLRIAIICTARLPGLRPTMRSVVQMIEDAEPCR 959

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0070825 "micropyle" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
 Identities = 314/827 (37%), Positives = 461/827 (55%)

Query:     1 MSFMY--LTGTLPDF-SPMQNLRRLDLSNNLFT-GQFPLSVFNLTNLEVLSFNENPGFKL 56
             +S +Y  L GT+P F   +  L+ L+LS N F+  + P    NLTNLEV+   E     +
Sbjct:   161 LSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSRIPPEFGNLTNLEVMWLTEC--HLV 218

Query:    57 WKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLK 116
              ++P+S + +L+KL  + LA   L G IP S+G +T++  +EL  N +TG IPPE+G LK
Sbjct:   219 GQIPDS-LGQLSKLVDLDLALNDLVGHIPPSLGGLTNVVQIELYNNSLTGEIPPELGNLK 277

Query:   117 NLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS 176
             +LR L+   NQ L G IP+EL  +  L  L++  N+L G++P SI   P L  ++++ N 
Sbjct:   278 SLRLLDASMNQ-LTGKIPDELCRVP-LESLNLYENNLEGELPASIALSPNLYEIRIFGNR 335

Query:   177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR 236
             L+G +   +  ++ L  L + +N  +G++P DL     L  L +  N  SG +P  +   
Sbjct:   336 LTGGLPKDLGLNSPLRWLDVSENEFSGDLPADLCAKGELEELLIIHNSFSGVIPESLADC 395

Query:   237 GKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNS 296
               L    +  N FSG +P       ++    + NN   G I + I    ++S++ LS N 
Sbjct:   396 RSLTRIRLAYNRFSGSVPTGFWGLPHVNLLELVNNSFSGEISKSIGGASNLSLLILSNNE 455

Query:   297 FSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNL 356
             F+G +   +G+  NL++L    N+ SG +P  +     L  +DL  N  SG + SGI + 
Sbjct:   456 FTGSLPEEIGSLDNLNQLSASGNKFSGSLPDSLMSLGELGTLDLHGNQFSGELTSGIKSW 515

Query:   357 KKLNLLMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIPESLCELLPNSINFSNNRL 416
             KKLN L L                             +G IP SL  L  N +N S NRL
Sbjct:   516 KKLNELNLADNEFTGKIPDEIGSLSVLNYLDLSGNMFSGKIPVSLQSLKLNQLNLSYNRL 575

Query:   417 SGPIPLSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAV----VT 472
             SG +P SL K+    SF GNPGLC  +          LC      ++   +W +    V 
Sbjct:   576 SGDLPPSLAKDMYKNSFIGNPGLCGDIK--------GLCGSENEAKKRGYVWLLRSIFVL 627

Query:   473 SAVIIFIGLLLF-LK-RRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTE 530
             +A+++  G+  F  K R F K RA+     TL S         FH++ F + EILE++ E
Sbjct:   628 AAMVLLAGVAWFYFKYRTFKKARAMERSKWTLMS---------FHKLGFSEHEILESLDE 678

Query:   531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSAS-DTDQ-----LQLDKGLKTEVE 584
              N +G G SG VYK+ L +GE VAVK+LW+   K +   D ++     +Q D+  + EVE
Sbjct:   679 DNVIGAGASGKVYKVVLTNGETVAVKRLWTGSVKETGDCDPEKGYKPGVQ-DEAFEAEVE 737

Query:   585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH--KGLVHLDWPTRHKIAFGV 642
             TLG IRHKNIVKL+C  S+  C LLVYEYMPNG+L D LH  KG + L W TR KI    
Sbjct:   738 TLGKIRHKNIVKLWCCCSTRDCKLLVYEYMPNGSLGDLLHSSKGGM-LGWQTRFKIILDA 796

Query:   643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
             A+GL+YLHH  + PI+HRDIKS NIL+D +Y  +VADFG+AK +   G    + +VIAG+
Sbjct:   797 AEGLSYLHHDSVPPIVHRDIKSNNILIDGDYGARVADFGVAKAVDLTGKAPKSMSVIAGS 856

Query:   703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
              GY+APEYAY+ +   K D+YSFGVV++E++T ++PV+ + G+ K+++ WV   +D K G
Sbjct:   857 CGYIAPEYAYTLRVNEKSDIYSFGVVILEIVTRKRPVDPELGE-KDLVKWVCSTLDQK-G 914

Query:   763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             I  V+D KL   F++E+ ++L + + CTS  P  RP+M  VV++L E
Sbjct:   915 IEHVIDPKLDSCFKEEISKILNVGLLCTSPLPINRPSMRRVVKMLQE 961

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 328/855 (38%), Positives = 476/855 (55%)

Query:     6 LTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
             L+ T+P  F   + L  L+L+ N  +G  P S+ N+T L+ L    N  F   ++P S +
Sbjct:   151 LSDTIPSSFGEFRKLESLNLAGNFLSGTIPASLGNVTTLKELKLAYNL-FSPSQIP-SQL 208

Query:    65 FRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELY 124
               LT+L+++ LA C L G IP S+  +TSL +L+LT N +TG IP  I  LK + Q+EL+
Sbjct:   209 GNLTELQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKTVEQIELF 268

Query:   125 YNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
              N   +G +PE +GN+T L   D S+N L+GKIP++ L L  L  L L+ N L G +   
Sbjct:   269 -NNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDN-LNLLNLESLNLFENMLEGPLPES 326

Query:   185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
             I  S TL+ L L++N LTG +P  LG  SPL  +DLS N+ SG +PA VC  GKL+Y ++
Sbjct:   327 ITRSKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEGKLEYLIL 386

Query:   245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
             + N FSG + ++L +CK+L R R+SNN L G IP G   LP +S+++LS NSF+G I  T
Sbjct:   387 IDNSFSGEISNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKT 446

Query:   305 VGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLML 364
             +  A+NLS L + +N+ SG IP+EI     +++I  ++N  SG IP  +  LK+L+ L L
Sbjct:   447 IIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDL 506

Query:   365 QXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIPESLCELLP--NSINFSNNRLSGPIPL 422
                                          +G IP+ +  +LP  N ++ S+N+ SG IPL
Sbjct:   507 SKNQLSGEIPRELRGWKNLNELNLANNHLSGEIPKEV-GILPVLNYLDLSSNQFSGEIPL 565

Query:   423 SL--IKEGLVE-SF---SGN-PGLCVS-VSVNSSDKNFPLCPHTK------TR-RRLSSI 467
              L  +K  ++  S+   SG  P L  + +  +    N  LC          TR + +  +
Sbjct:   566 ELQNLKLNVLNLSYNHLSGKIPPLYANKIYAHDFIGNPGLCVDLDGLCRKITRSKNIGYV 625

Query:   468 WAVVTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEA 527
             W ++T  ++  +  ++ +    +K R +       SS+      +SFH++ F + EI + 
Sbjct:   626 WILLTIFLLAGLVFVVGIVMFIAKCRKLRA---LKSSTLAASKWRSFHKLHFSEHEIADC 682

Query:   528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASD--TDQLQLDKGLKTEVET 585
             + EKN +G G SG VYK++L  GEVVAVKKL ++  K    +  +D L  D     EVET
Sbjct:   683 LDEKNVIGFGSSGKVYKVELRGGEVVAVKKL-NKSVKGGDDEYSSDSLNRDV-FAAEVET 740

Query:   586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH---KGLVHLDWPTRHKIAFGV 642
             LG IRHK+IV+L+C  SS  C LLVYEYMPNG+L D LH   KG V L WP R +IA   
Sbjct:   741 LGTIRHKSIVRLWCCCSSGDCKLLVYEYMPNGSLADVLHGDRKGGVVLGWPERLRIALDA 800

Query:   643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
             A+GL+YLHH  + PI+HRD+KS+NILLD +Y  KVADFGIAKV Q  G K  T   ++G 
Sbjct:   801 AEGLSYLHHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKVGQMSGSK--TPEAMSGI 858

Query:   703 YGYLAPEYAYSSKATTKCDVYS--FGV-VLMELITGRKPVEDDFGDNKNIIYWVSIKVDT 759
              G      A     T + +  S  +   V++  +   K   D    +K++  WV   +D 
Sbjct:   859 AGSCG-YIAPEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSELGDKDMAKWVCTALD- 916

Query:   760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCK 819
             K G+  V+D KL   F++E+ +V+ I + CTS  P  RP+M +VV +L E        C 
Sbjct:   917 KCGLEPVIDPKLDLKFKEEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGA--VPCS 974

Query:   820 FPNKSNKESSNATKI 834
              PN S K S    K+
Sbjct:   975 SPNTS-KRSKTGGKL 988

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 305/844 (36%), Positives = 454/844 (53%)

Query:     5 YLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLE--VLSFNENPGFKLWKLPE 61
             +  G+LP  F  +Q LR L LS N  TG+ P  +  L +LE  +L +NE   FK    PE
Sbjct:   175 FFQGSLPSSFKNLQKLRFLGLSGNNLTGELPSVLGQLPSLETAILGYNE---FKGPIPPE 231

Query:    62 SSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQL 121
                  +  L+ + LA   L G+IP+ +G + SL  L L  N  TG IP EIG +  L+ L
Sbjct:   232 FG--NINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYENNFTGTIPREIGSITTLKVL 289

Query:   122 ELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEI 181
             + + +  L G IP E+  L  L  L++  N LSG IP +I  L +L+VL+L+NN+LSGE+
Sbjct:   290 D-FSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGEL 348

Query:   182 SSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQY 241
              S +  ++ L  L +  NS +GE+P  L     L  L L  N  +G +PA + +   L  
Sbjct:   349 PSDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQIPATLSTCQSLVR 408

Query:   242 FLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI 301
               +  N+ +G +P    + + L R  ++ N L G IP  I     +S ID S N     +
Sbjct:   409 VRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQIRSSL 468

Query:   302 ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNL 361
              +T+ +  NL    +  N ISG +P +     SL  +DLS N L+G IPS I + +KL  
Sbjct:   469 PSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDLSSNTLTGTIPSSIASCEKLVS 528

Query:   362 LMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIPESL-CELLPNSINFSNNRLSGPI 420
             L L+                            TG +PES+        +N S N+L+GP+
Sbjct:   529 LNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESIGTSPALELLNVSYNKLTGPV 588

Query:   421 PLS-LIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTR-RRLSSIWAVVTSAVIIF 478
             P++  +K    +   GN GLC  V    S        H+    +R+ + W +  ++V+  
Sbjct:   589 PINGFLKTINPDDLRGNSGLCGGVLPPCSKFQRATSSHSSLHGKRIVAGWLIGIASVLA- 647

Query:   479 IGLLLFLKRRFSKQRAITE--PDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQ 536
             +G+L  + R   K+        DET S   +P+ + +FHR+ F   +IL  + E N +G 
Sbjct:   648 LGILTIVTRTLYKKWYSNGFCGDETASKGEWPWRLMAFHRLGFTASDILACIKESNMIGM 707

Query:   537 GGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIV 595
             G +G VYK +++ S  V+AVKKLW     +    T       G   EV  LG +RH+NIV
Sbjct:   708 GATGIVYKAEMSRSSTVLAVKKLWRSAADIEDGTTGDFV---G---EVNLLGKLRHRNIV 761

Query:   596 KLYCYFSSLYCNLLVYEYMPNGNLWDALH----KGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             +L  +  +    ++VYE+M NGNL DA+H     G + +DW +R+ IA GVA GLAYLHH
Sbjct:   762 RLLGFLYNDKNMMIVYEFMLNGNLGDAIHGKNAAGRLLVDWVSRYNIALGVAHGLAYLHH 821

Query:   652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                 P+IHRDIKS NILLD N   ++ADFG+A+++ AR  K  T +++AG+YGY+APEY 
Sbjct:   822 DCHPPVIHRDIKSNNILLDANLDARIADFGLARMM-AR--KKETVSMVAGSYGYIAPEYG 878

Query:   712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKL 771
             Y+ K   K D+YS+GVVL+EL+TGR+P+E +FG++ +I+ WV  K+     + E LD  +
Sbjct:   879 YTLKVDEKIDIYSYGVVLLELLTGRRPLEPEFGESVDIVEWVRRKIRDNISLEEALDPNV 938

Query:   772 SGS--FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESS 829
                   ++EM+ VL+IA+ CT+K P  RP+M +V+ +L EA P R  +    N+ N   S
Sbjct:   939 GNCRYVQEEMLLVLQIALLCTTKLPKDRPSMRDVISMLGEAKPRRKSNS---NEENTSRS 995

Query:   830 NATK 833
              A K
Sbjct:   996 LAEK 999

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 313/827 (37%), Positives = 446/827 (53%)

Query:     6 LTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
             LTG LP   + +  LR L L  N F+G+ P +      LE L+ + N      K+P   I
Sbjct:   154 LTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNE--LTGKIPPE-I 210

Query:    65 FRLTKLRIMVLATC-ALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL 123
               LT LR + +    A    +P  IGN++ L   +     +TG IPPEIG L+ L  L L
Sbjct:   211 GNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFL 270

Query:   124 YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS 183
               N    GTI +ELG ++ L  +D+S N  +G+IP S  +L  L +L L+ N L G I  
Sbjct:   271 QVNA-FTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPE 329

Query:   184 VIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFL 243
              I     L +L L++N+ TG +PQ LG+   LV+LDLS NKL+G LP  +CS  +L   +
Sbjct:   330 FIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLI 389

Query:   244 VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG--PI 301
              L N   G +PDSL +C++L R R+  N L GSIP+ +  LP +S ++L  N  +G  PI
Sbjct:   390 TLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPI 449

Query:   302 ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNL 361
             +   G + +L ++ +  NQ+SG +P+ I     + K+ L  N  SG IP  IG L++L+ 
Sbjct:   450 SGG-GVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSK 508

Query:   362 LMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIPESLCEL-LPNSINFSNNRLSGPI 420
             L                               +G IP  L  + + N +N S N L G I
Sbjct:   509 LDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSI 568

Query:   421 PLSLIK-EGLVE-SFSGN--PGLCVSV------SVNSSDKNFPLC-----PHTKTRRRLS 465
             P+++   + L    FS N   GL  S       +  S   N  LC     P  K   +  
Sbjct:   569 PVTIASMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCGPYLGPCGKGTHQSH 628

Query:   466 SIWAVVTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREIL 525
                   T+ +++ +GLL F    F+    I       +S    + + +F R+ F   ++L
Sbjct:   629 VKPLSATTKLLLVLGLL-FCSMVFAIVAIIKARSLRNASEAKAWRLTAFQRLDFTCDDVL 687

Query:   526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
             +++ E N +G+GG+G VYK  +  G++VAVK+L    T    S  D      G   E++T
Sbjct:   688 DSLKEDNIIGKGGAGIVYKGTMPKGDLVAVKRL---ATMSHGSSHDH-----GFNAEIQT 739

Query:   586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH--KGLVHLDWPTRHKIAFGVA 643
             LG IRH++IV+L  + S+   NLLVYEYMPNG+L + LH  KG  HL W TR+KIA   A
Sbjct:   740 LGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKG-GHLHWNTRYKIALEAA 798

Query:   644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
             +GL YLHH     I+HRD+KS NILLD N++  VADFG+AK LQ  G  +  +  IAG+Y
Sbjct:   799 KGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSA-IAGSY 857

Query:   704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT-KEG 762
             GY+APEYAY+ K   K DVYSFGVVL+ELITG+KPV  +FGD  +I+ WV    D+ K+ 
Sbjct:   858 GYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKKPV-GEFGDGVDIVQWVRSMTDSNKDC 916

Query:   763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             +++V+D +LS     E+  V  +A+ C  +    RPTM EVVQ+L E
Sbjct:   917 VLKVIDLRLSSVPVHEVTHVFYVALLCVEEQAVERPTMREVVQILTE 963

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 321/872 (36%), Positives = 462/872 (52%)

Query:     6 LTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
             LTG LP   + +  LR L L  N F G+ P S  +   +E L+ + N    + K+P   I
Sbjct:   154 LTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNE--LVGKIPPE-I 210

Query:    65 FRLTKLRIMVLATC-ALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL 123
               LT LR + +    A    +P  IGN++ L   +     +TG IPPEIG L+ L  L L
Sbjct:   211 GNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLDTLFL 270

Query:   124 YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS 183
               N   +G +  ELG L+ L  +D+S N  +G+IP S   L  L +L L+ N L GEI  
Sbjct:   271 QVNV-FSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHGEIPE 329

Query:   184 VIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFL 243
              I +   L +L L++N+ TG +PQ LG+   L ++DLS NKL+G LP  +CS  KL+  +
Sbjct:   330 FIGDLPELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSGNKLETLI 389

Query:   244 VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPH----------------- 286
              L N   G +PDSL +C++L R R+  N L GSIP+G+  LP                  
Sbjct:   390 TLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELPV 449

Query:   287 ---VSI----IDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKID 339
                VS+    I LS N  SGP+   +GN   + +L +  N+  G IPSE+ +   L KID
Sbjct:   450 AGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKLQQLSKID 509

Query:   340 LSDNLLSGPIPSGIGNLKKLNLLMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIPE 399
              S NL SG I   I   K L  + L                              G IP 
Sbjct:   510 FSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPG 569

Query:   400 SLCELLP-NSINFSNNRLSGPIP-LSLIKEGLVESFSGNPGLCVSVSVNSSDKNFPLCPH 457
             S+  +    S++FS N LSG +P           SF GNP LC        D        
Sbjct:   570 SISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVAKGGHQ 629

Query:   458 TKTRRRLSSIWAVVTSAVIIFIGLLL----FLKRRFSKQRAITEPDETLSSSFFPYDVKS 513
             + ++  LS+     +  +++ +GLL+    F      K R++ +  E+ +     + + +
Sbjct:   630 SHSKGPLSA-----SMKLLLVLGLLVCSIAFAVVAIIKARSLKKASESRA-----WRLTA 679

Query:   514 FHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
             F R+ F   ++L+++ E N +G+GG+G VYK  + +G++VAVK+L +  ++ S+      
Sbjct:   680 FQRLDFTCDDVLDSLKEDNIIGKGGAGIVYKGVMPNGDLVAVKRL-AAMSRGSSH----- 733

Query:   574 QLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH--KGLVHLD 631
               D G   E++TLG IRH++IV+L  + S+   NLLVYEYMPNG+L + LH  KG  HL 
Sbjct:   734 --DHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKG-GHLH 790

Query:   632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
             W TR+KIA   A+GL YLHH     I+HRD+KS NILLD N++  VADFG+AK LQ  G 
Sbjct:   791 WDTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGT 850

Query:   692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
              +  +  IAG+YGY+APEYAY+ K   K DVYSFGVVL+EL+TGRKPV  +FGD  +I+ 
Sbjct:   851 SECMSA-IAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPV-GEFGDGVDIVQ 908

Query:   752 WVSIKVDT-KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
             WV    D+ K+ +++VLD +LS     E+  V  +A+ C  +    RPTM EVVQ+L E 
Sbjct:   909 WVRKMTDSNKDSVLKVLDPRLSSIPIHEVTHVFYVAMLCVEEQAVERPTMREVVQILTEI 968

Query:   811 DPCRFESCKFPNKSNKESSNATK--IKNPSEL 840
                     +   +S  ES  + K  +++P +L
Sbjct:   969 PKLPPSKDQPMTESAPESELSPKSGVQSPPDL 1000

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2169975 HSL2 "HAESA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1129 (402.5 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
 Identities = 282/769 (36%), Positives = 418/769 (54%)

Query:     7 TGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF 65
             TG +P  +  +  L+ L+L+ N  +G  P  +  LT L  L       F    +P S++ 
Sbjct:   160 TGEIPQSYGRLTALQVLNLNGNPLSGIVPAFLGYLTELTRLDL-AYISFDPSPIP-STLG 217

Query:    66 RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYY 125
              L+ L  + L    L G+IP SI N+  L +L+L  N +TG IP  IG L+++ Q+ELY 
Sbjct:   218 NLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLAMNSLTGEIPESIGRLESVYQIELYD 277

Query:   126 NQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
             N+ L+G +PE +GNLTEL + D+S N+L+G++PE I  L +L    L +N  +G +  V+
Sbjct:   278 NR-LSGKLPESIGNLTELRNFDVSQNNLTGELPEKIAAL-QLISFNLNDNFFTGGLPDVV 335

Query:   186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
             A +  L    +++NS TG +P++LG++S +   D+S N+ SG LP  +C R KLQ  +  
Sbjct:   336 ALNPNLVEFKIFNNSFTGTLPRNLGKFSEISEFDVSTNRFSGELPPYLCYRRKLQKIITF 395

Query:   246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTV 305
              N  SG +P+S   C +L   R+++N L G +P     LP   +   + N   G I  ++
Sbjct:   396 SNQLSGEIPESYGDCHSLNYIRMADNKLSGEVPARFWELPLTRLELANNNQLQGSIPPSI 455

Query:   306 GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQ 365
               AR+LS+L +  N  SG IP ++     L  IDLS N   G IPS I  LK L  + +Q
Sbjct:   456 SKARHLSQLEISANNFSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCINKLKNLERVEMQ 515

Query:   366 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIPESLCEL-LPNSINFSNNRLSGPIPLSL 424
                                          G IP  L +L + N ++ SNN+L+G IP  L
Sbjct:   516 ENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAEL 575

Query:   425 IKEGLVE-SFSGN------P-GLCVSVSVNSSDKNFPLC-PHT------KTRRRLSSIWA 469
             ++  L + + S N      P G    +   S   N  LC P+       +++R    I  
Sbjct:   576 LRLKLNQFNVSDNKLYGKIPSGFQQDIFRPSFLGNPNLCAPNLDPIRPCRSKRETRYILP 635

Query:   470 VVTSAVIIFIGLLLFLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMT 529
             +    ++   G L++L   F K + + +     ++      +  F R+ F + +I   +T
Sbjct:   636 ISILCIVALTGALVWL---FIKTKPLFKRKPKRTNK-----ITIFQRVGFTEEDIYPQLT 687

Query:   530 EKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
             E N +G GGSG VY++ L SG+ +AVKKLW +  + + S++         ++EVETLG +
Sbjct:   688 EDNIIGSGGSGLVYRVKLKSGQTLAVKKLWGETGQKTESESV-------FRSEVETLGRV 740

Query:   590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH-----LDWPTRHKIAFGVAQ 644
             RH NIVKL    +      LVYE+M NG+L D LH    H     LDW TR  IA G AQ
Sbjct:   741 RHGNIVKLLMCCNGEEFRFLVYEFMENGSLGDVLHSEKEHRAVSPLDWTTRFSIAVGAAQ 800

Query:   645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR---GGKDSTTTVIAG 701
             GL+YLHH  + PI+HRD+KS NILLD   +P+VADFG+AK L+     G  D + + +AG
Sbjct:   801 GLSYLHHDSVPPIVHRDVKSNNILLDHEMKPRVADFGLAKPLKREDNDGVSDVSMSCVAG 860

Query:   702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
             +YGY+APEY Y+SK   K DVYSFGVVL+ELITG++P +  FG+NK+I+
Sbjct:   861 SYGYIAPEYGYTSKVNEKSDVYSFGVVLLELITGKRPNDSSFGENKDIV 909

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 303/827 (36%), Positives = 440/827 (53%)

Query:     6 LTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
             L G +P +   M++L++L L  N   G  P  +  L+ +  + F+EN      ++P   +
Sbjct:   289 LVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSEN--LLSGEIPVE-L 345

Query:    65 FRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELY 124
              ++++LR++ L    L G IP  +  + +L  L+L+ N +TG IPP    L ++RQL+L+
Sbjct:   346 SKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLF 405

Query:   125 YNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
             +N  L+G IP+ LG  + L  +D S N LSGKIP  I +   L +L L +N + G I   
Sbjct:   406 HNS-LSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPG 464

Query:   185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
             +    +L  L +  N LTG+ P +L +   L  ++L +N+ SGPLP ++ +  KLQ   +
Sbjct:   465 VLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHL 524

Query:   245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
               N FS  LP+ +++  NL+ F VS+N L G IP  I +   +  +DLS NSF G +   
Sbjct:   525 AANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPE 584

Query:   305 VGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLM- 363
             +G+   L  L +  N+ SG IP  I     L ++ +  NL SG IP  +G L  L + M 
Sbjct:   585 LGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMN 644

Query:   364 LQXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIP---ESLCELLPNSINFSNNRLSGPI 420
             L                             +G IP   E+L  LL    NFS N L+G +
Sbjct:   645 LSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLL--GCNFSYNNLTGQL 702

Query:   421 PLSLIKEGL-VESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWA---VVTSAVI 476
             P + I + + + SF GN GLC    + S D +    PH  + +  S+      ++ S+VI
Sbjct:   703 PHTQIFQNMTLTSFLGNKGLCGG-HLRSCDPSHSSWPHISSLKAGSARRGRIIIIVSSVI 761

Query:   477 IFIGLLLF-LKRRFSKQRAI-TEPDETLSSSFFPY-DVKSFHRISFDQREILEAMT---E 530
               I LLL  +   F +     T P       FF   D+    +  F  ++ILEA     +
Sbjct:   762 GGISLLLIAIVVHFLRNPVEPTAPYVHDKEPFFQESDIYFVPKERFTVKDILEATKGFHD 821

Query:   531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
                VG+G  GTVYK  + SG+ +AVKKL S R     ++ +    D   + E+ TLG IR
Sbjct:   822 SYIVGRGACGTVYKAVMPSGKTIAVKKLESNR---EGNNNNSNNTDNSFRAEILTLGKIR 878

Query:   591 HKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVAQGLA 647
             H+NIV+LY  CY      NLL+YEYM  G+L + LH G  H +DWPTR  IA G A+GLA
Sbjct:   879 HRNIVRLYSFCYHQGSNSNLLLYEYMSRGSLGELLHGGKSHSMDWPTRFAIALGAAEGLA 938

Query:   648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
             YLHH     IIHRDIKS NIL+D N++  V DFG+AKV+     K  + + +AG+YGY+A
Sbjct:   939 YLHHDCKPRIIHRDIKSNNILIDENFEAHVGDFGLAKVIDMPLSK--SVSAVAGSYGYIA 996

Query:   708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
             PEYAY+ K T KCD+YSFGVVL+EL+TG+ PV+       ++  W    +       E+L
Sbjct:   997 PEYAYTMKVTEKCDIYSFGVVLLELLTGKAPVQP-LEQGGDLATWTRNHIRDHSLTSEIL 1055

Query:   768 DKKLSGSFRD----EMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
             D  L+    D     MI V +IA+ CT  SP+ RPTM EVV +L E+
Sbjct:  1056 DPYLTKVEDDVILNHMITVTKIAVLCTKSSPSDRPTMREVVLMLIES 1102

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
 Identities = 308/858 (35%), Positives = 452/858 (52%)

Query:     5 YLTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENP--GFKLWKLPE 61
             Y TG++P +   +  ++RL L  N  TG+ P  + NL +   + F+EN   GF    +P+
Sbjct:   270 YFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGF----IPK 325

Query:    62 SSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQL 121
                  +  L+++ L    L G IP  +G +T L  L+L+ N + G IP E+  L  L  L
Sbjct:   326 E-FGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDL 384

Query:   122 ELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEI 181
             +L+ NQ L G IP  +G  +  + LDMS N LSG IP    R   L +L L +N LSG I
Sbjct:   385 QLFDNQ-LEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNI 443

Query:   182 SSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQY 241
                +    +LT L L DN LTG +P +L     L  L+L +N LSG + A +     L+ 
Sbjct:   444 PRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLER 503

Query:   242 FLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI 301
               +  N F+G +P  +     ++ F +S+N L G IP+ + S   +  +DLS N FSG I
Sbjct:   504 LRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYI 563

Query:   302 ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNL 361
             A  +G    L  L +  N+++G IP        L+++ L  NLLS  IP  +G L  L +
Sbjct:   564 AQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQI 623

Query:   362 -LMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYIPESLCELLPNSI-NFSNNRLSGP 419
              L +                             +G IP S+  L+   I N SNN L G 
Sbjct:   624 SLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGT 683

Query:   420 IPLSLIKEGLVES-FSGNPGLCVSVSVNSSDKNFPLCPHTKT----------RRRLSSIW 468
             +P + + + +  S F+GN GLC S   +      PL PH+ +          R+++ +I 
Sbjct:   684 VPDTAVFQRMDSSNFAGNHGLCNSQRSHCQ----PLVPHSDSKLNWLINGSQRQKILTIT 739

Query:   469 AVVTSAV--IIFIGLLLFLKRR---FSKQRAITEPDETLSSSFFPYDVKSFHRISFDQRE 523
              +V  +V  I F+GL   +KRR   F      T+PD  + S +FP    ++  +    R 
Sbjct:   740 CIVIGSVFLITFLGLCWTIKRREPAFVALEDQTKPD-VMDSYYFPKKGFTYQGLVDATRN 798

Query:   524 ILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
               E +     +G+G  GTVYK +++ GEV+AVKKL S+    S+        D   + E+
Sbjct:   799 FSEDVV----LGRGACGTVYKAEMSGGEVIAVKKLNSRGEGASS--------DNSFRAEI 846

Query:   584 ETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVH--LDWPTRHKIA 639
              TLG IRH+NIVKLY  CY  +   NLL+YEYM  G+L + L +G  +  LDW  R++IA
Sbjct:   847 STLGKIRHRNIVKLYGFCYHQN--SNLLLYEYMSKGSLGEQLQRGEKNCLLDWNARYRIA 904

Query:   640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
              G A+GL YLHH     I+HRDIKS NILLD  +Q  V DFG+AK++     K  + + +
Sbjct:   905 LGAAEGLCYLHHDCRPQIVHRDIKSNNILLDERFQAHVGDFGLAKLIDLSYSK--SMSAV 962

Query:   700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT 759
             AG+YGY+APEYAY+ K T KCD+YSFGVVL+ELITG+ PV+       +++ WV   +  
Sbjct:   963 AGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKPPVQP-LEQGGDLVNWVRRSIRN 1021

Query:   760 KEGIMEVLDKKLSGSFR---DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA-DPCRF 815
                 +E+ D +L  + +    EM  VL+IA+ CTS SPA+RPTM EVV ++ EA      
Sbjct:  1022 MIPTIEMFDARLDTNDKRTVHEMSLVLKIALFCTSNSPASRPTMREVVAMITEARGSSSL 1081

Query:   816 ESCKFPNKSNKESSNATK 833
              S    +++  E +N++K
Sbjct:  1082 SSSSITSETPLEEANSSK 1099

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	840
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-99
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-56
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	5e-55
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-54
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-50
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-48
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-45
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	6e-45
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	6e-43
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-40
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	3e-37
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	4e-37
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	4e-36
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	7e-36
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	8e-34
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-33
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-30
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	9e-30
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-29
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	4e-29
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	7e-29
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	9e-29
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	6e-28
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-27
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	3e-27
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-26
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	6e-26
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-25
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-25
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-25
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	2e-25
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	8e-25
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-24
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	5e-24
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	6e-24
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-23
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-23
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-23
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	4e-23
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	6e-23
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-22
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	3e-22
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-22
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	5e-22
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	7e-22
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	7e-22
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	6e-21
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	1e-20
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-20
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	2e-20
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	2e-20
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-20
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	4e-20
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	4e-20
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	4e-20
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	5e-20
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	7e-20
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	8e-20
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	8e-20
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	1e-19
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	1e-19
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-19
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	2e-19
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-19
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	3e-19
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	7e-19
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	8e-19
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	2e-18
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	2e-18
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	2e-18
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	3e-18
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	3e-18
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	5e-18
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	6e-18
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	7e-18
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	8e-18
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-17
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	1e-17
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	1e-17
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	2e-17
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	2e-17
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	3e-17
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	4e-17
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	5e-17
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	6e-17
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	6e-17
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	7e-17
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-16
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-16
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-16
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-16
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	3e-16
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	3e-16
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	3e-16
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	3e-16
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	3e-16
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	4e-16
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	4e-16
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	4e-16
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	6e-16
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	6e-16
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	7e-16
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	7e-16
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	8e-16
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	1e-15
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	1e-15
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	1e-15
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	1e-15
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-15
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	1e-15
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	1e-15
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	1e-15
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	2e-15
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-15
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	2e-15
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	2e-15
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	3e-15
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	3e-15
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	3e-15
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	3e-15
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	3e-15
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	4e-15
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	6e-15
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	8e-15
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	8e-15
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	9e-15
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	1e-14
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-14
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	2e-14
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	2e-14
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	2e-14
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	2e-14
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	2e-14
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	2e-14
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	2e-14
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	3e-14
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	3e-14
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-14
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	4e-14
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	5e-14
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	5e-14
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	6e-14
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	7e-14
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	7e-14
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	8e-14
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	1e-13
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	1e-13
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	2e-13
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	2e-13
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	2e-13
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-13
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	2e-13
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	2e-13
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	3e-13
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	4e-13
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	5e-13
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	5e-13
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	5e-13
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-13
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	6e-13
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	6e-13
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	7e-13
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	9e-13
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	9e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	1e-12
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	1e-12
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	1e-12
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	1e-12
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	1e-12
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	2e-12
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	2e-12
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	2e-12
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-12
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	3e-12
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	3e-12
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	5e-12
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	5e-12
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	6e-12
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	6e-12
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-11
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	1e-11
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-11
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	1e-11
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	1e-11
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	1e-11
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	2e-11
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	3e-11
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	3e-11
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	4e-11
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	4e-11
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	4e-11
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	5e-11
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	5e-11
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	5e-11
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	5e-11
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	6e-11
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	6e-11
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	7e-11
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	8e-11
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	8e-11
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	9e-11
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	9e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-11
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	1e-10
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	1e-10
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	1e-10
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	1e-10
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	1e-10
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	1e-10
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	1e-10
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	2e-10
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	2e-10
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	2e-10
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	2e-10
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	2e-10
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	2e-10
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-10
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	2e-10
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	2e-10
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	3e-10
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	3e-10
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	3e-10
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	3e-10
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	3e-10
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	4e-10
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	4e-10
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	4e-10
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-10
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	4e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-10
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	5e-10
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	5e-10
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	5e-10
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	6e-10
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	6e-10
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	6e-10
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	7e-10
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	8e-10
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	1e-09
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	1e-09
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	1e-09
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-09
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	1e-09
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	2e-09
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	2e-09
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	2e-09
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	4e-09
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	4e-09
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	5e-09
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	5e-09
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	5e-09
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	6e-09
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-09
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	7e-09
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	7e-09
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	7e-09
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	8e-09
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	1e-08
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	1e-08
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	1e-08
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	1e-08
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	1e-08
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	1e-08
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	1e-08
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	2e-08
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	2e-08
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	2e-08
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	3e-08
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	3e-08
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	3e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-08
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	9e-08
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	1e-07
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	2e-07
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	2e-07
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	2e-07
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	2e-07
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	2e-07
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-07
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	3e-07
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	4e-07
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	4e-07
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	4e-07
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	1e-06
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	1e-06
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	1e-06
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	2e-06
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	2e-06
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	3e-06
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-06
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	4e-06
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	5e-06
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	7e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	2e-05
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	2e-05
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
cd05077	262	cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) do	4e-04
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	5e-04
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	6e-04
PHA02882	294	PHA02882, PHA02882, putative serine/threonine kina	0.002
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  331 bits (851), Expect = e-99
 Identities = 271/885 (30%), Positives = 419/885 (47%), Gaps = 118/885 (13%)

Query: 6   LTGTLPD--FSPMQNLRRLDLSNNLFTGQFPL-SVFNLTNLEVLSFNENPGFKLWKLPES 62
           L+G +PD  F+   +LR L+LSNN FTG  P  S+ NL  L+ LS N   G    ++P  
Sbjct: 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD-LSNNMLSG----EIPN- 158

Query: 63  SIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLE 122
            I   + L+++ L    L G+IP S+ N+TSL  L L  N + G IP E+G +K+L+ + 
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 123 LYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEIS 182
           L YN  L+G IP E+G LT L  LD+  N+L+G IP S+  L  L+ L LY N LSG I 
Sbjct: 219 LGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Query: 183 SVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYF 242
             I +   L  L L DNSL+GE+P+ + Q   L +L L  N  +G +P  + S  +LQ  
Sbjct: 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

Query: 243 LVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIA 302
            +  N FSG +P +L +  NL    +S N+L G IPEG+ S  ++  + L  NS  G I 
Sbjct: 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 303 NTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLL 362
            ++G  R+L  + +Q N  SG +PSE  +   +  +D+S+N L G I S   ++  L +L
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457

Query: 363 MLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL----------------LP 406
            L  NK    +P+S  S K L  LDLS N  +G +P  L  L                +P
Sbjct: 458 SLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Query: 407 N---------SINFSNNRLSGPIPLSLIK-------------------------EGLVE- 431
           +         S++ S+N+LSG IP S  +                         E LV+ 
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576

Query: 432 SFSGN------PGLCVSVSVNSS--DKNFPLC--------PHTKTRRRLSSIWAVVTSAV 475
           + S N      P     +++N+S    N  LC        P  K  R+  S W  +T  +
Sbjct: 577 NISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTL 636

Query: 476 IIFIGLLL-------FLKRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAM 528
             F+ L L          R   + + +   D T    FF   V      S    +IL ++
Sbjct: 637 GAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSK----SITINDILSSL 692

Query: 529 TEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
            E+N + +G  G  YK       +  V K          +D + +       +E+  +G 
Sbjct: 693 KEENVISRGKKGASYKGKSIKNGMQFVVK--------EINDVNSIPS-----SEIADMGK 739

Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
           ++H NIVKL     S     L++EY+   NL + L     +L W  R KIA G+A+ L +
Sbjct: 740 LQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR----NLSWERRRKIAIGIAKALRF 795

Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           LH      ++  ++    I++D   +P +    +  +L        T T    +  Y+AP
Sbjct: 796 LHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLL-------CTDTKCFISSAYVAP 847

Query: 709 EYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD 768
           E   +   T K D+Y FG++L+EL+TG+ P + +FG + +I+ W           M + D
Sbjct: 848 ETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWI-D 906

Query: 769 KKLSG---SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
             + G     ++E+++V+ +A+ CT+  P  RP  N+V++ L  A
Sbjct: 907 PSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESA 951

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  208 bits (530), Expect = 6e-56
 Identities = 131/361 (36%), Positives = 198/361 (54%), Gaps = 5/361 (1%)

Query: 62  SSIFRLTKLRIMVLATCALHGQIPASIGNVT-SLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           S+IFRL  ++ + L+   L G IP  I   + SL  L L+ N  TG IP   G + NL  
Sbjct: 87  SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           L+L  N  L+G IP ++G+ + L  LD+  N L GKIP S+  L  L  L L +N L G+
Sbjct: 145 LDLS-NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I   +    +L  + L  N+L+GE+P ++G  + L  LDL  N L+GP+P+ + +   LQ
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           Y  + QN  SG +P S+   + L+   +S+N L G IPE ++ L ++ I+ L  N+F+G 
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
           I   + +   L  L +  N+ SG IP  + +  +L  +DLS N L+G IP G+ +   L 
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGP 419
            L+L SN L   IP SL + +SL  + L +N  +G +P    +L L   ++ SNN L G 
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443

Query: 420 I 420
           I
Sbjct: 444 I 444

Length = 968

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  190 bits (484), Expect = 5e-55
 Identities = 96/285 (33%), Positives = 136/285 (47%), Gaps = 46/285 (16%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G G  GTVYK     +G++VAVK L  +  K           D+  + E+  L  + H
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSK--------KDQTARREIRILRRLSH 57

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
            NIV+L   F     LY   LV EY   G+L+D L +G   L      KIA  + +GL Y
Sbjct: 58  PNIVRLIDAFEDKDHLY---LVMEYCEGGDLFDYLSRG-GPLSEDEAKKIALQILRGLEY 113

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           LH +G    IIHRD+K  NILLD N   K+ADFG+AK         S+ T   GT  Y+A
Sbjct: 114 LHSNG----IIHRDLKPENILLDENGVVKIADFGLAKK---LLKSSSSLTTFVGTPWYMA 166

Query: 708 PE-YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV 766
           PE     +    K DV+S GV+L EL+TG+ P   +   ++  +            I  +
Sbjct: 167 PEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQL------------IRRI 214

Query: 767 LDKKLSGSF------RDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           L   L           +E   +++   +C +K P+ RPT  E++Q
Sbjct: 215 LGPPLEFDEPKWSSGSEEAKDLIK---KCLNKDPSKRPTAEEILQ 256

Length = 260

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  203 bits (519), Expect = 2e-54
 Identities = 138/431 (32%), Positives = 215/431 (49%), Gaps = 33/431 (7%)

Query: 22  LDLSNNLFTGQFPLSVFNLTNLEV--LSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA 79
           +DLS    +G+   ++F L  ++   LS N+  G     +P+      + LR + L+   
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG----PIPDDIFTTSSSLRYLNLSNNN 129

Query: 80  LHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGN 139
             G IP   G++ +L  L+L+ N ++G IP +IG   +L+ L+L  N  L G IP  L N
Sbjct: 130 FTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTN 186

Query: 140 LTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
           LT L  L ++ N L G+IP  + ++  L+ + L  N+LSGEI   I   T+L  L L  N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 200 SLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLAR 259
           +LTG +P  LG    L  L L +NKLSGP+P  + S  KL    +  N  SG +P+ + +
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 260 CKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRN 319
            +NL    + +N+  G IP  + SLP + ++ L  N FSG I   +G   NL+ L +  N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 320 QISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSS 379
            ++G IP  +  + +L K+ L  N L G IP  +G  + L  + LQ N  +  +P+  + 
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426

Query: 380 LKSLNVLDLSNNLLTGYIPESLCEL----------------LPNS--------INFSNNR 415
           L  +  LD+SNN L G I     ++                LP+S        ++ S N+
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486

Query: 416 LSGPIPLSLIK 426
            SG +P  L  
Sbjct: 487 FSGAVPRKLGS 497

Length = 968

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  176 bits (449), Expect = 4e-50
 Identities = 84/279 (30%), Positives = 125/279 (44%), Gaps = 38/279 (13%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+G+G  G VY   D  +G++VA+K +  ++ K         +  + +  E++ L  ++
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIK---------KDRERILREIKILKKLK 55

Query: 591 HKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
           H NIV+LY  F     LY   LV EY   G+L+D L K    L           +   L 
Sbjct: 56  HPNIVRLYDVFEDEDKLY---LVMEYCEGGDLFDLLKKR-GRLSEDEARFYLRQILSALE 111

Query: 648 YLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           YLH  G    I+HRD+K  NILLD +   K+ADFG+A+ L          T   GT  Y+
Sbjct: 112 YLHSKG----IVHRDLKPENILLDEDGHVKLADFGLARQLD----PGEKLTTFVGTPEYM 163

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV 766
           APE           D++S GV+L EL+TG+ P   D  D    ++   I           
Sbjct: 164 APEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGD--DQLLELFKK-IGKPKPPFPPP- 219

Query: 767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +  +S   +D +I+      +   K P  R T  E +Q
Sbjct: 220 -EWDISPEAKD-LIR------KLLVKDPEKRLTAEEALQ 250

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  173 bits (441), Expect = 2e-49
 Identities = 82/277 (29%), Positives = 118/277 (42%), Gaps = 65/277 (23%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG GTVY   D  +G+ VA+K +  + +     +         L  E+E L  + H 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEE---------LLREIEILKKLNHP 51

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NIVKLY  F       LV EY   G+L D L +    L      +I   + +GL YLH  
Sbjct: 52  NIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHS- 110

Query: 653 LLSPIIHRDIKSTNILLD-VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE-Y 710
             + IIHRD+K  NILLD  N + K+ADFG++K+L       S    I GT  Y+APE  
Sbjct: 111 --NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLT---SDKSLLKTIVGTPAYMAPEVL 165

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
                 + K D++S GV+L EL                                      
Sbjct: 166 LGKGYYSEKSDIWSLGVILYEL-------------------------------------- 187

Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                  E+  ++R   +   K P  RP+  E+++ L
Sbjct: 188 ------PELKDLIR---KMLQKDPEKRPSAKEILEHL 215

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  186 bits (473), Expect = 1e-48
 Identities = 117/343 (34%), Positives = 178/343 (51%), Gaps = 33/343 (9%)

Query: 90  NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMS 149
           N + +  ++L+G  I+G I   I  L  ++                          +++S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQT-------------------------INLS 101

Query: 150 VNHLSGKIPESILRLP-KLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQD 208
            N LSG IP+ I      LR L L NN+ +G I     +   L  L L +N L+GE+P D
Sbjct: 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND 159

Query: 209 LGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRV 268
           +G +S L VLDL  N L G +P  + +   L++  +  N   G +P  L + K+L    +
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 269 SNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSE 328
             N+L G IP  I  L  ++ +DL YN+ +GPI +++GN +NL  LF+ +N++SG IP  
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279

Query: 329 IYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDL 388
           I+    L+ +DLSDN LSG IP  +  L+ L +L L SN     IP +L+SL  L VL L
Sbjct: 280 IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339

Query: 389 SNNLLTGYIPESLCELLPNS---INFSNNRLSGPIPLSLIKEG 428
            +N  +G IP++L +   N+   ++ S N L+G IP  L   G
Sbjct: 340 WSNKFSGEIPKNLGK--HNNLTVLDLSTNNLTGEIPEGLCSSG 380

Length = 968

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =  163 bits (416), Expect = 1e-45
 Identities = 81/290 (27%), Positives = 125/290 (43%), Gaps = 45/290 (15%)

Query: 529 TEKNKVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           T   K+G+G  G VYK             VAVK L     K  AS+       +    E 
Sbjct: 2   TLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTL-----KEDASEQQI----EEFLREA 52

Query: 584 ETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
             +  + H N+VKL   C         +V EYM  G+L   L K    L        A  
Sbjct: 53  RIMRKLDHPNVVKLLGVCTEEEPLY--IVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQ 110

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A+G+ YL        IHRD+ + N L+  N   K++DFG+++ L      D       G
Sbjct: 111 IARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDL-----YDDDYYRKRG 162

Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 ++APE     K T+K DV+SFGV+L E+ T G +P       N+ ++ ++    
Sbjct: 163 GKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGM--SNEEVLEYL---- 216

Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
             K G    L +  +     E+  ++    +C ++ P  RPT +E+V++L
Sbjct: 217 --KNG--YRLPQPPNCP--PELYDLML---QCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score =  161 bits (411), Expect = 6e-45
 Identities = 86/290 (29%), Positives = 129/290 (44%), Gaps = 44/290 (15%)

Query: 529 TEKNKVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           T   K+G+G  G VYK             VAVK L     K  AS+       +    E 
Sbjct: 2   TLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTL-----KEDASEQQI----EEFLREA 52

Query: 584 ETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAF 640
             +  + H NIVKL   C         +V EYMP G+L D L K     L        A 
Sbjct: 53  RIMRKLDHPNIVKLLGVCTEEEPLM--IVMEYMPGGDLLDYLRKNRPKELSLSDLLSFAL 110

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            +A+G+ YL        IHRD+ + N L+  N   K++DFG+++ L      D    V  
Sbjct: 111 QIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDL----YDDDYYKVKG 163

Query: 701 G--TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
           G     ++APE     K T+K DV+SFGV+L E+ T G +P       N  ++ ++    
Sbjct: 164 GKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGM--SNAEVLEYL---- 217

Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
             K+G    L K  +     E+ +++    +C ++ P  RPT +E+V++L
Sbjct: 218 --KKG--YRLPKPPNCP--PELYKLML---QCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score =  156 bits (397), Expect = 6e-43
 Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 34/280 (12%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             +G+G  G+VY  +D ++GE++AVK +     ++S    ++L   + L+ E+  L +++
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSV-----ELSGDSEEEL---EALEREIRILSSLQ 57

Query: 591 HKNIVK-LYCYFSSLYCNLLVY-EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
           H NIV+            L ++ EY+  G+L   L K    L  P   K    + +GLAY
Sbjct: 58  HPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGLAY 116

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           LH +G    I+HRDIK  NIL+D +   K+ADFG AK L      + T + + GT  ++A
Sbjct: 117 LHSNG----IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGS-VRGTPYWMA 171

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           PE     +     D++S G  ++E+ TG+ P    + +  N       K+    G    +
Sbjct: 172 PEVIRGEEYGRAADIWSLGCTVIEMATGKPP----WSELGN-PMAALYKI-GSSGEPPEI 225

Query: 768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + LS   +D     LR   +C  + P  RPT     +LL
Sbjct: 226 PEHLSEEAKD----FLR---KCLRRDPKKRPT---ADELL 255

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  148 bits (376), Expect = 4e-40
 Identities = 83/294 (28%), Positives = 130/294 (44%), Gaps = 60/294 (20%)

Query: 533 KVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           K+G+G  G VYK         +   VAVK L     K  AS+ ++ +       E   + 
Sbjct: 6   KLGEGAFGEVYKGTLKGDGEGTETKVAVKTL-----KEGASEEEREEF----LEEASIMK 56

Query: 588 NIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
            + H NIV+L   C         +V EYMP G+L D L K    L      ++A  +A+G
Sbjct: 57  KLSHPNIVRLLGVCTQGEPLY--IVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKG 114

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG- 704
           + YL        +HRD+ + N L+  N   K++DFG+++ +     +D       G    
Sbjct: 115 MEYLES---KNFVHRDLAARNCLVTENLVVKISDFGLSRDIY----EDDYYRKRGGGKLP 167

Query: 705 --YLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             ++APE     K T+K DV+SFGV+L E+ T G +P    +    N             
Sbjct: 168 IKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQP----YPGMSN------------- 210

Query: 762 GIMEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              EVL+    G +R        DE+ +++    +C +  P  RPT +E+V+ L
Sbjct: 211 --EEVLELLEDG-YRLPRPENCPDELYELML---QCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score =  139 bits (353), Expect = 3e-37
 Identities = 79/281 (28%), Positives = 124/281 (44%), Gaps = 44/281 (15%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+GG G VYK     +G+ VA+K +   + +        +        E++ L   +H
Sbjct: 7   KIGKGGFGEVYKARHKRTGKEVAIKVI---KLESKEKKEKIIN-------EIQILKKCKH 56

Query: 592 KNIVKLYCYFSSLYCNL---LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
            NIVK Y    S        +V E+   G+L D L      L       +   + +GL Y
Sbjct: 57  PNIVKYYG---SYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEY 113

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           LH +G    IIHRDIK+ NILL  + + K+ DFG++  L     +++    + GT  ++A
Sbjct: 114 LHSNG----IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNT----MVGTPYWMA 165

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           PE         K D++S G+  +EL  G+ P   +    K +     I      G   + 
Sbjct: 166 PEVINGKPYDYKADIWSLGITAIELAEGKPPYS-ELPPMKALFK---IA---TNGPPGLR 218

Query: 768 D-KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + +K S  F+D + +       C  K+P  RPT     QLL
Sbjct: 219 NPEKWSDEFKDFLKK-------CLQKNPEKRPT---AEQLL 249

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  139 bits (354), Expect = 4e-37
 Identities = 80/299 (26%), Positives = 126/299 (42%), Gaps = 59/299 (19%)

Query: 532 NKVGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
            K+G+G  G VYK      +     VAVK L     K  AS+ ++      LK E   + 
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTL-----KEDASEEERKDF---LK-EARVMK 51

Query: 588 NIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHK--------GLVHLDWPTRHK 637
            + H N+V+L   C         LV EYM  G+L D L K            L       
Sbjct: 52  KLGHPNVVRLLGVCTEEEPLY--LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLS 109

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
            A  +A+G+ YL        +HRD+ + N L+  +   K++DFG+++ +         T 
Sbjct: 110 FAIQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTG 166

Query: 698 VIAGTYG-----YLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG--DNKNI 749
                 G     ++APE       T+K DV+SFGV+L E+ T G  P    +    N+ +
Sbjct: 167 ------GKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATP----YPGLSNEEV 216

Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
           + ++      ++G    L K       DE+ +++     C    P  RPT +E+V+ L 
Sbjct: 217 LEYL------RKG--YRLPKPEYCP--DELYELML---SCWQLDPEDRPTFSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score =  136 bits (346), Expect = 4e-36
 Identities = 86/292 (29%), Positives = 132/292 (45%), Gaps = 55/292 (18%)

Query: 530 EKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           E+ KV GQG SG VYK     +G++ A+KK+          D +  +    L  E++TL 
Sbjct: 4   ERVKVLGQGSSGVVYKVRHKPTGKIYALKKI------HVDGDEEFRKQ---LLRELKTLR 54

Query: 588 NIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR--HKIAFGV 642
           +     +VK Y  F     +    +V EYM  G+L D L K       P      IA  +
Sbjct: 55  SCESPYVVKCYGAFYKEGEIS---IVLEYMDGGSLADLLKK---VGKIPEPVLAYIARQI 108

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            +GL YLH      IIHRDIK +N+L++   + K+ADFGI+KVL+    + +T     GT
Sbjct: 109 LKGLDYLHTKR--HIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNT---FVGT 163

Query: 703 YGYLAPE------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK 756
             Y++PE      Y+Y++      D++S G+ L+E   G+ P    F       ++    
Sbjct: 164 VTYMSPERIQGESYSYAA------DIWSLGLTLLECALGKFP----FLPPGQPSFF---- 209

Query: 757 VDTKEGIMEVLDKKL-SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            +  + I +     L +  F  E    +     C  K P  RP+     +LL
Sbjct: 210 -ELMQAICDGPPPSLPAEEFSPEFRDFIS---ACLQKDPKKRPS---AAELL 254

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score =  137 bits (347), Expect = 7e-36
 Identities = 91/302 (30%), Positives = 141/302 (46%), Gaps = 48/302 (15%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D RE+ + +    K+G+G SG VYK  D  +G+ VA+KK+     ++        Q  + 
Sbjct: 16  DPRELYKNLE---KIGEGASGEVYKATDRATGKEVAIKKM-----RLRK------QNKEL 61

Query: 579 LKTEVETLGNIRHKNIVKLY-CYFSSLYCNLL--VYEYMPNGNLWDALHKGLVHLDWPTR 635
           +  E+  + + +H NIV  Y  Y   L  + L  V EYM  G+L D + +  V +     
Sbjct: 62  IINEILIMKDCKHPNIVDYYDSY---LVGDELWVVMEYMDGGSLTDIITQNFVRM---NE 115

Query: 636 HKIAF---GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
            +IA+    V QGL YLH      +IHRDIKS NILL  +   K+ADFG A  L     K
Sbjct: 116 PQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSK 172

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
            ++   + GT  ++APE         K D++S G++ +E+  G  P   +          
Sbjct: 173 RNS---VVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR------ 223

Query: 753 VSIKVDTKEGIMEVLDK-KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD 811
            ++ + T +GI  + +  K S  F+D     L    +C  K P  RP+  E++Q      
Sbjct: 224 -ALFLITTKGIPPLKNPEKWSPEFKD----FLN---KCLVKDPEKRPSAEELLQHPFLKK 275

Query: 812 PC 813
            C
Sbjct: 276 AC 277

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score =  130 bits (328), Expect = 8e-34
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 22/212 (10%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
            + +G+G  G VYK ++L +G+ VA+K++      +     + L   K +  E++ L N+
Sbjct: 5   GDLIGRGAFGVVYKGLNLETGDFVAIKQI-----SLEKIKEEAL---KSIMQEIDLLKNL 56

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GL 646
           +H NIVK      +     ++ EY  NG+L   + K      +P    +A  V Q   GL
Sbjct: 57  KHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKK---FGPFP-ESLVAVYVYQVLQGL 112

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           AYLH      +IHRDIK+ NIL   +   K+ADFG+A  L      D++   + GT  ++
Sbjct: 113 AYLHE---QGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDAS---VVGTPYWM 166

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           APE    S A+T  D++S G  ++EL+TG  P
Sbjct: 167 APEVIEMSGASTASDIWSLGCTVIELLTGNPP 198

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score =  128 bits (325), Expect = 2e-33
 Identities = 78/288 (27%), Positives = 123/288 (42%), Gaps = 45/288 (15%)

Query: 529 TEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
               ++G+G  G VY +   + G++  +K+       +  S+  + + +  L  EV+ L 
Sbjct: 3   EIIKQIGKGSFGKVYLVRRKSDGKLYVLKE-------IDLSNMSEKEREDALN-EVKILK 54

Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ--- 644
            + H NI+K Y  F       +V EY   G+L   + K           +I     Q   
Sbjct: 55  KLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCL 114

Query: 645 GLAYLH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            L YLH        I+HRDIK  NI L  N   K+ DFGI+KVL      D   TV+ GT
Sbjct: 115 ALKYLHSRK-----ILHRDIKPQNIFLTSNGLVKLGDFGISKVLS--STVDLAKTVV-GT 166

Query: 703 YGYLAPE----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             YL+PE      Y+ K+    D++S G VL EL T + P E   G+N   +        
Sbjct: 167 PYYLSPELCQNKPYNYKS----DIWSLGCVLYELCTLKHPFE---GENLLELAL------ 213

Query: 759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL 806
               I++     +   +  E+  ++        K P  RP++ +++Q 
Sbjct: 214 ---KILKGQYPPIPSQYSSELRNLVS---SLLQKDPEERPSIAQILQS 255

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score =  119 bits (301), Expect = 4e-30
 Identities = 91/288 (31%), Positives = 137/288 (47%), Gaps = 47/288 (16%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           NK+G G  G VY  ++L++GE++AVK++  Q         +  +  K +  E++ L  ++
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQD--------NDPKTIKEIADEMKVLELLK 57

Query: 591 HKNIVKLY---CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
           H N+VK Y    +   +Y   +  EY   G L + L  G + LD          + +GLA
Sbjct: 58  HPNLVKYYGVEVHREKVY---IFMEYCSGGTLEELLEHGRI-LDEHVIRVYTLQLLEGLA 113

Query: 648 YLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV------IA 700
           YLH HG    I+HRDIK  NI LD N   K+ DFG A  L     K++TTT+      +A
Sbjct: 114 YLHSHG----IVHRDIKPANIFLDHNGVIKLGDFGCAVKL-----KNNTTTMGEEVQSLA 164

Query: 701 GTYGYLAPEYAYSSKATTK---CDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV 757
           GT  Y+APE     K        D++S G V++E+ TG++P   +  +   I++ V    
Sbjct: 165 GTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWS-ELDNEFQIMFHVGAG- 222

Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             K  I + L          E    L    RC    P  RPT +E++Q
Sbjct: 223 -HKPPIPDSLQL------SPEGKDFLD---RCLESDPKKRPTASELLQ 260

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score =  118 bits (299), Expect = 9e-30
 Identities = 90/297 (30%), Positives = 128/297 (43%), Gaps = 51/297 (17%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD-K 577
           D  E++E       +G G +  VY  I L + E VA+K++          D ++ Q    
Sbjct: 1   DDYELIE------VIGVGATAVVYAAICLPNNEKVAIKRI----------DLEKCQTSVD 44

Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH--LDWPTR 635
            L+ EV+ +    H N+VK Y  F       LV  Y+  G+L D +        LD    
Sbjct: 45  ELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAII 104

Query: 636 HKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
             +   V +GL YLH +G     IHRDIK+ NILL  +   K+ADFG++  L   G +  
Sbjct: 105 ATVLKEVLKGLEYLHSNGQ----IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTR 160

Query: 695 TT-TVIAGTYGYLAPE-----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK- 747
                  GT  ++APE     + Y  KA    D++SFG+  +EL TG  P    +   K 
Sbjct: 161 KVRKTFVGTPCWMAPEVMEQVHGYDFKA----DIWSFGITAIELATGAAPYS-KYPPMKV 215

Query: 748 --NIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
               +      ++T         KK S SFR  MI        C  K P+ RPT  E
Sbjct: 216 LMLTLQNDPPSLET-----GADYKKYSKSFRK-MIS------LCLQKDPSKRPTAEE 260

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score =  121 bits (302), Expect = 2e-29
 Identities = 85/318 (26%), Positives = 127/318 (39%), Gaps = 25/318 (7%)

Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH- 591
           K+G+G  G VY       ++VA+K L       +     + +  +    E++ L ++ H 
Sbjct: 7   KLGEGSFGEVYLARDR--KLVALKVL-------AKKLESKSKEVERFLREIQILASLNHP 57

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH--LDWPTRHKIAFGVAQGLAYL 649
            NIVKLY +F       LV EY+  G+L D L K      L       I   +   L YL
Sbjct: 58  PNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYL 117

Query: 650 HHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGK---DSTTTVIAGTYGY 705
           H      IIHRDIK  NILLD +    K+ DFG+AK+L   G      +  +   GT GY
Sbjct: 118 HS---KGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGY 174

Query: 706 LAPEYAYSS---KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
           +APE         A++  D++S G+ L EL+TG  P E +   +        I       
Sbjct: 175 MAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPS 234

Query: 763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPN 822
           +   L              +L+   +  +K P  R + +  +     A     ES     
Sbjct: 235 LASPLSPSNPELISKAASDLLK---KLLAKDPKNRLSSSSDLSHDLLAHLKLKESDLSDL 291

Query: 823 KSNKESSNATKIKNPSEL 840
               +S+       PS  
Sbjct: 292 LKPDDSAPLRLSLPPSLE 309

Length = 384

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  116 bits (294), Expect = 4e-29
 Identities = 71/210 (33%), Positives = 95/210 (45%), Gaps = 24/210 (11%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G GG G V      +     A+K +     K    +T Q    + + +E E L    H 
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCV----KKRHIVETGQ---QEHIFSEKEILEECNHP 53

Query: 593 NIVKLYCYFS---SLYCNLLVYEYMPNGNLWDALHKGLVHLD-WPTRHKIAFGVAQGLAY 648
            IVKLY  F     +Y   ++ EY   G LW  L       D +  R  IA  V     Y
Sbjct: 54  FIVKLYRTFKDKKYIY---MLMEYCLGGELWTILRD-RGLFDEYTARFYIAC-VVLAFEY 108

Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           LH+     II+RD+K  N+LLD N   K+ DFG AK L+  G K   T    GT  Y+AP
Sbjct: 109 LHN---RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLK-SGQK---TWTFCGTPEYVAP 161

Query: 709 EYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           E   +       D +S G++L EL+TGR P
Sbjct: 162 EIILNKGYDFSVDYWSLGILLYELLTGRPP 191

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score =  116 bits (292), Expect = 7e-29
 Identities = 80/281 (28%), Positives = 124/281 (44%), Gaps = 44/281 (15%)

Query: 532 NKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            ++G G SG V K+    +G+++AVK        +     + +Q  K +  E++ L    
Sbjct: 7   GELGAGNSGVVSKVLHRPTGKIMAVKT-------IRLEINEAIQ--KQILRELDILHKCN 57

Query: 591 HKNIVKLY-CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
              IV  Y  ++++   ++ + EYM  G+L   L +    +      KIA  V +GL YL
Sbjct: 58  SPYIVGFYGAFYNNGDISICM-EYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYL 116

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H      IIHRD+K +NIL++   Q K+ DFG++  L     K        GT  Y+APE
Sbjct: 117 HEKH--KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTF-----VGTSSYMAPE 169

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
               +  + K D++S G+ L+EL TGR P            Y      D  +GI E+L  
Sbjct: 170 RIQGNDYSVKSDIWSLGLSLIELATGRFP------------YPPE--NDPPDGIFELLQY 215

Query: 770 KL--------SGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
            +        SG F  +    +     C  K P  RP+  E
Sbjct: 216 IVNEPPPRLPSGKFSPDFQDFVN---LCLIKDPRERPSYKE 253

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  115 bits (290), Expect = 9e-29
 Identities = 73/223 (32%), Positives = 102/223 (45%), Gaps = 26/223 (11%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V  +   ++G++ A+K L     K       +++      TE   L  I H 
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVL----KKKKIIKRKEVEH---TLTERNILSRINHP 53

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
            IVKL+  F     LY   LV EY P G L+  L K             A  +   L YL
Sbjct: 54  FIVKLHYAFQTEEKLY---LVLEYAPGGELFSHLSK-EGRFSEERARFYAAEIVLALEYL 109

Query: 650 H-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           H  G    II+RD+K  NILLD +   K+ DFG+AK L     + S T    GT  YLAP
Sbjct: 110 HSLG----IIYRDLKPENILLDADGHIKLTDFGLAKEL---SSEGSRTNTFCGTPEYLAP 162

Query: 709 EYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
           E           D +S GV+L E++TG+ P    + +++  IY
Sbjct: 163 EVLLGKGYGKAVDWWSLGVLLYEMLTGKPPF---YAEDRKEIY 202

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score =  114 bits (287), Expect = 6e-28
 Identities = 70/236 (29%), Positives = 100/236 (42%), Gaps = 54/236 (22%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVK-----KLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G   TV    +  + +  A+K     +L  ++ KV           K +K E E L 
Sbjct: 9   IGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEK-KV-----------KYVKIEKEVLT 56

Query: 588 NI-RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
            +  H  I+KLY  F    +LY    V EY PNG L   + K    LD        F  A
Sbjct: 57  RLNGHPGIIKLYYTFQDEENLY---FVLEYAPNGELLQYIRK-YGSLDEKC---TRFYAA 109

Query: 644 Q---GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
           +    L YLH  G    IIHRD+K  NILLD +   K+ DFG AKVL      +S     
Sbjct: 110 EILLALEYLHSKG----IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDA 165

Query: 700 A-----------------GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
                             GT  Y++PE      A    D+++ G ++ +++TG+ P
Sbjct: 166 TNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPP 221

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score =  111 bits (280), Expect = 2e-27
 Identities = 71/214 (33%), Positives = 103/214 (48%), Gaps = 33/214 (15%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G  G+VYK I   +G+VVA+K +          + D  ++ K    E+  L     
Sbjct: 10  KLGEGSYGSVYKAIHKETGQVVAIKVV--------PVEEDLQEIIK----EISILKQCDS 57

Query: 592 KNIVKLY-CYFSSLYCNLLVYEYMPNGNLWD---ALHKGLVHLDWPTRHKIAF---GVAQ 644
             IVK Y  YF +     +V EY   G++ D     +K L      T  +IA       +
Sbjct: 58  PYIVKYYGSYFKNTDL-WIVMEYCGAGSVSDIMKITNKTL------TEEEIAAILYQTLK 110

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH    +  IHRDIK+ NILL+   Q K+ADFG++  L     K    TVI GT  
Sbjct: 111 GLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAK--RNTVI-GTPF 164

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           ++APE         K D++S G+  +E+  G+ P
Sbjct: 165 WMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPP 198

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score =  111 bits (280), Expect = 3e-27
 Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 33/217 (15%)

Query: 532 NKVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G V       +  N+GE VAVK L    +      +D        + E+E L
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSL--NHSGEEQHRSD-------FEREIEIL 60

Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             + H+NIVK    C         L+ EY+P+G+L D L +    ++       +  + +
Sbjct: 61  RTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICK 120

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ-------ARGGKDSTTT 697
           G+ YL        IHRD+ + NIL++     K++DFG+AKVL         +   +S   
Sbjct: 121 GMDYLGSQRY---IHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIF 177

Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
                  + APE   +SK ++  DV+SFGV L EL T
Sbjct: 178 -------WYAPECLRTSKFSSASDVWSFGVTLYELFT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score =  109 bits (274), Expect = 3e-26
 Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 33/216 (15%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK---GLKT----E 582
             K+G+G  G VYK  D  +GE+VA+KK+               +LD    G+ +    E
Sbjct: 4   LEKLGEGTYGVVYKARDKKTGEIVALKKI---------------RLDNEEEGIPSTALRE 48

Query: 583 VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
           +  L  ++H NIVKL     +     LV+EY    +L   L K    L       I + +
Sbjct: 49  ISLLKELKHPNIVKLLDVIHTERKLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQL 107

Query: 643 AQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
            +GLAY H H     I+HRD+K  NIL++ +   K+ADFG+A+       +  T  V+  
Sbjct: 108 LRGLAYCHSHR----ILHRDLKPQNILINRDGVLKLADFGLARAFGIP-LRTYTHEVV-- 160

Query: 702 TYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
           T  Y APE    SK  +T  D++S G +  E+ITG+
Sbjct: 161 TLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGK 196

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score =  108 bits (271), Expect = 6e-26
 Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 39/286 (13%)

Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E + E +++G+G  G+V K  L +  ++   K       ++      LQ  K +  E+E 
Sbjct: 1   EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKT------ITTDPNPDLQ--KQILRELEI 52

Query: 586 LGNIRHKNIVKLYCYF-----SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH---- 636
             + +   IVK Y  F     SS+    +  EY   G+L D+++K +             
Sbjct: 53  NKSCKSPYIVKYYGAFLDESSSSIG---IAMEYCEGGSL-DSIYKKVKKRGGRIGEKVLG 108

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
           KIA  V +GL+YLH      IIHRDIK +NILL    Q K+ DFG++  L        T 
Sbjct: 109 KIAESVLKGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSL--AGTF 163

Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK 756
           T   GT  Y+APE       +   DV+S G+ L+E+   R P   +       I  +S  
Sbjct: 164 T---GTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYI 220

Query: 757 VDTKEGIM---EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT 799
           V+     +        K S  F+D + Q       C  K P  RPT
Sbjct: 221 VNMPNPELKDEPGNGIKWSEEFKDFIKQ-------CLEKDPTRRPT 259

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score =  106 bits (267), Expect = 1e-25
 Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 26/217 (11%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            ++G G  G VYK  D+ +GE+VA+K        +     D  ++   ++ E+  L   R
Sbjct: 9   QRIGSGTYGDVYKARDIATGELVAIKV-------IKLEPGDDFEI---IQQEISMLKECR 58

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF---GVAQGLA 647
           H NIV  +  +       +V EY   G+L D        L   +  +IA+      +GLA
Sbjct: 59  HPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPL---SELQIAYVCRETLKGLA 115

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH    +  IHRDIK  NILL  +   K+ADFG++  L A   K    + I GT  ++A
Sbjct: 116 YLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAK--RKSFI-GTPYWMA 169

Query: 708 PEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVED 741
           PE A   +      KCD+++ G+  +EL   + P+ D
Sbjct: 170 PEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFD 206

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score =  106 bits (267), Expect = 1e-25
 Identities = 72/211 (34%), Positives = 102/211 (48%), Gaps = 24/211 (11%)

Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           K+G G  G V+    N    VAVK L       + S    LQ       E + +  +RH 
Sbjct: 13  KLGAGQFGEVWMGTWNGTTKVAVKTLKPG----TMSPEAFLQ-------EAQIMKKLRHD 61

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHH 651
            +V+LY   S      +V EYM  G+L D L  G    L  P    +A  +A+G+AYL  
Sbjct: 62  KLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLES 121

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGYLAP 708
                 IHRD+ + NIL+  N   K+ADFG+A+++     +D   T   G      + AP
Sbjct: 122 ---RNYIHRDLAARNILVGENLVCKIADFGLARLI-----EDDEYTAREGAKFPIKWTAP 173

Query: 709 EYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           E A   + T K DV+SFG++L E++T GR P
Sbjct: 174 EAANYGRFTIKSDVWSFGILLTEIVTYGRVP 204

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score =  107 bits (269), Expect = 2e-25
 Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 32/216 (14%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTK----VSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G VYK  +  +GE+VA+KK+  +  K    ++A              E++ L
Sbjct: 5   AQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITA------------IREIKLL 52

Query: 587 GNIRHKNIVKLY-----CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
             +RH NIV+L          S+Y   +V+EYM + +L   L    V             
Sbjct: 53  QKLRHPNIVRLKEIVTSKGKGSIY---MVFEYMDH-DLTGLLDSPEVKFTESQIKCYMKQ 108

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + +GL YLH    + I+HRDIK +NIL++ +   K+ADFG+A+    R   D T  VI  
Sbjct: 109 LLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVI-- 163

Query: 702 TYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGR 736
           T  Y  PE    +++   + D++S G +L EL  G+
Sbjct: 164 TLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGK 199

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score =  106 bits (267), Expect = 2e-25
 Identities = 66/212 (31%), Positives = 116/212 (54%), Gaps = 8/212 (3%)

Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY  +++ +GE++AVK++    T     D+ Q  + K L++E+ETL ++ H 
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NIV+   + ++     +  EY+P G++   L       +   R      V +GLAYLH  
Sbjct: 69  NIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRF-FTEQVLEGLAYLHS- 126

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               I+HRD+K+ N+L+D +   K++DFGI+K        D   + + G+  ++APE  +
Sbjct: 127 --KGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMS-MQGSVFWMAPEVIH 183

Query: 713 SSKA--TTKCDVYSFGVVLMELITGRKPVEDD 742
           S     + K D++S G V++E+  GR+P  D+
Sbjct: 184 SYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDE 215

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  104 bits (261), Expect = 8e-25
 Identities = 74/253 (29%), Positives = 107/253 (42%), Gaps = 45/253 (17%)

Query: 534 VGQGGSGTVY---KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           + +G  G V+   K   ++G++ A+K        +  +D  +      + TE + L   +
Sbjct: 1   ISKGAYGRVFLAKKK--STGDIYAIKV-------IKKADMIRKNQVDQVLTERDILSQAQ 51

Query: 591 HKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGL 646
              +VKLY  F    +LY   LV EY+P G+L   L   G +  D   R  IA  +   L
Sbjct: 52  SPYVVKLYYSFQGKKNLY---LVMEYLPGGDLASLLENVGSLDEDV-ARIYIA-EIVLAL 106

Query: 647 AYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV-LQARGGKDSTTTV----IA 700
            YLH +G    IIHRD+K  NIL+D N   K+ DFG++KV L  R    +        I 
Sbjct: 107 EYLHSNG----IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIV 162

Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN----------KNII 750
           GT  Y+APE       +   D +S G +L E + G  P    F                I
Sbjct: 163 GTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPP----FHGETPEEIFQNILNGKI 218

Query: 751 YWVSIKVDTKEGI 763
            W      + E I
Sbjct: 219 EWPEDVEVSDEAI 231

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score =  102 bits (256), Expect = 3e-24
 Identities = 82/288 (28%), Positives = 127/288 (44%), Gaps = 54/288 (18%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
              +G+G  G V   D   G+ VAVK L     K  ++      L      E   +  +R
Sbjct: 11  GATIGKGEFGDVMLGDY-RGQKVAVKCL-----KDDSTAAQAF-LA-----EASVMTTLR 58

Query: 591 HKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGL 646
           H N+V+L       + LY   +V EYM  G+L D L  +G   +    +   A  V +G+
Sbjct: 59  HPNLVQLLGVVLQGNPLY---IVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGM 115

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            YL        +HRD+ + N+L+  +   KV+DFG+AK  +A  G+DS    +  T    
Sbjct: 116 EYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAK--EASQGQDSGKLPVKWT---- 166

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           APE     K +TK DV+SFG++L E+ + GR P            Y        +  + +
Sbjct: 167 APEALREKKFSTKSDVWSFGILLWEIYSFGRVP------------Y-------PRIPLKD 207

Query: 766 VLDKKLSGSFRDEMI-----QVLRIAIRCTSKSPATRPTMNEVVQLLA 808
           V+     G +R E       +V ++   C    PA RPT  ++ + LA
Sbjct: 208 VVPHVEKG-YRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLA 254

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score =  101 bits (254), Expect = 5e-24
 Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 34/218 (15%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             K+G G  G V++   N+   VAVK L       +    D L        E + +  +R
Sbjct: 11  LRKLGAGQFGEVWEGLWNNTTPVAVKTLKPG----TMDPKDFLA-------EAQIMKKLR 59

Query: 591 HKNIVKLYCYFSSLYCNL-----LVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQ 644
           H  +++LY       C L     +V E M  G+L + L       L  P    +A  VA 
Sbjct: 60  HPKLIQLYAV-----CTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVAS 114

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT-- 702
           G+AYL        IHRD+ + N+L+  N   KVADFG+A+V+     K+       G   
Sbjct: 115 GMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVI-----KEDIYEAREGAKF 166

Query: 703 -YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE A  ++ + K DV+SFG++L E++T GR P
Sbjct: 167 PIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMP 204

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score =  101 bits (254), Expect = 6e-24
 Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 16/209 (7%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +GQG  G VY   D+++G  +AVK     +        +  +    L+ E++ L N++H+
Sbjct: 10  LGQGAFGRVYLCYDVDTGRELAVK-----QVPFDPDSPETKKEVNALECEIQLLKNLQHE 64

Query: 593 NIVKLYCYFSSLYCNLLVY---EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
            IV+   Y+  L  +  +    EYMP G++ D L       +  TR K    + +G+ YL
Sbjct: 65  RIVQ---YYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTR-KYTRQILEGVEYL 120

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H  +   I+HRDIK  NIL D     K+ DFG +K LQ      +    + GT  +++PE
Sbjct: 121 HSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPE 177

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKP 738
                    K DV+S G  ++E++T + P
Sbjct: 178 VISGEGYGRKADVWSVGCTVVEMLTEKPP 206

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score =  101 bits (254), Expect = 1e-23
 Identities = 73/210 (34%), Positives = 98/210 (46%), Gaps = 24/210 (11%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            VG+G  G V K  +  +GE+VA+KK      K S  D D   + K    EV+ L  +RH
Sbjct: 8   VVGEGAYGVVLKCRNKATGEIVAIKKF-----KESEDDED---VKKTALREVKVLRQLRH 59

Query: 592 KNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
           +NIV L   F     LY   LV+EY+    L + L      L         + + Q +AY
Sbjct: 60  ENIVNLKEAFRRKGRLY---LVFEYVER-TLLELLEASPGGLPPDAVRSYIWQLLQAIAY 115

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            H H     IIHRDIK  NIL+  +   K+ DFG A+ L+AR     T  V   T  Y A
Sbjct: 116 CHSHN----IIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVA--TRWYRA 169

Query: 708 PEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           PE         K  DV++ G ++ EL+ G 
Sbjct: 170 PELLVGDTNYGKPVDVWAIGCIMAELLDGE 199

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score =  100 bits (250), Expect = 2e-23
 Identities = 70/219 (31%), Positives = 115/219 (52%), Gaps = 23/219 (10%)

Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G+VY  ++ +SGE++AVK++       S+ D  +  LD  L  E+  L  ++H+
Sbjct: 8   IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLD-ALAREIALLKELQHE 66

Query: 593 NIVK-LYCYFSSLYCNLLVYEYMPNG------NLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           NIV+ L     + + N+ + EY+P G      N + A  + LV             + +G
Sbjct: 67  NIVQYLGSSLDADHLNIFL-EYVPGGSVAALLNNYGAFEETLVR-------NFVRQILKG 118

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR---GGKDSTTTVIAGT 702
           L YLH+     IIHRDIK  NIL+D     K++DFGI+K L+A       +     + G+
Sbjct: 119 LNYLHN---RGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGS 175

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
             ++APE    +  T K D++S G +++E++TG+ P  D
Sbjct: 176 VFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPD 214

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 99.5 bits (248), Expect = 3e-23
 Identities = 72/282 (25%), Positives = 122/282 (43%), Gaps = 39/282 (13%)

Query: 531 KNKVGQGGSGTVYKIDLNS-GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
            NK+G+G  G V+K+   +   V A+K+       +  S  ++ + ++ +  E   L  +
Sbjct: 5   LNKIGKGSFGVVFKVVRKADKRVYAMKQ-------IDLSKMNRREREEAID-EARVLAKL 56

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGL-----VHLDWPTRHKIAFGVAQ 644
               I++ Y  F       +V EY  NG+L   L             W    +    +  
Sbjct: 57  DSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVW----RFFIQILL 112

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GLA+LH      I+HRDIKS N+ LD     K+ D G+AK+L       +T   I GT  
Sbjct: 113 GLAHLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANT---IVGTPY 166

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           YL+PE         K DV++ GVVL E  TG+ P +    +N+  +            I+
Sbjct: 167 YLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFD---ANNQGALI---------LKII 214

Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL 806
             +   +S  +  ++ Q++    +C +K    RP   ++++ 
Sbjct: 215 RGVFPPVSQMYSQQLAQLID---QCLTKDYRQRPDTFQLLRN 253

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score =  100 bits (250), Expect = 4e-23
 Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 26/218 (11%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G+G  G V+K  D  +GE VA+KK+  +R          +        E++ L   +H
Sbjct: 7   RIGEGAHGIVFKAKDRETGETVALKKVALRRL------EGGIPN--QALREIKALQACQH 58

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ----GLA 647
             +VKL   F      +LV EYMP+  L + L       + P          +    G+A
Sbjct: 59  PYVVKLLDVFPHGSGFVLVMEYMPSD-LSEVLR----DEERPLPEAQVKSYMRMLLKGVA 113

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           Y+H    + I+HRD+K  N+L+  +   K+ADFG+A++      +  +  V   T  Y A
Sbjct: 114 YMHA---NGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQV--ATRWYRA 168

Query: 708 PEYAYSS-KATTKCDVYSFGVVLMELITGRK--PVEDD 742
           PE  Y + K     D+++ G +  EL+ G    P E+D
Sbjct: 169 PELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEND 206

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 98.7 bits (246), Expect = 6e-23
 Identities = 77/288 (26%), Positives = 119/288 (41%), Gaps = 57/288 (19%)

Query: 533 KVGQGGSGTVYKIDLNS-GEVVAVKK----LWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           K+G+G  G+VYK+   S  +  A+K+      SQ+ +  A +            E+  L 
Sbjct: 7   KLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVN------------EIRILA 54

Query: 588 NIRHKNIVKLYCYF-SSLYCNLL--VYEYMPNGNLWDALHKGLV-------HLDWPTRHK 637
           ++ H NI+    Y  + L  N L  V EY P G+L  A+ K             W    +
Sbjct: 55  SVNHPNII---SYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIW----R 107

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           I   + +GL  LH      I+HRD+KS NILL  N   K+ D GI+KVL+    K    T
Sbjct: 108 IFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAK----T 160

Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV 757
            I GT  Y+APE       + K D++S G +L E+ T   P E                 
Sbjct: 161 QI-GTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFE------------ARSMQ 207

Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           D +  +       +   +  ++   +R         P  RP  ++++ 
Sbjct: 208 DLRYKVQRGKYPPIPPIYSQDLQNFIR---SMLQVKPKLRPNCDKILA 252

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 25/210 (11%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G  G VYK  D  +GE+VA+KK+   R +   S+         L+ E++ L  + H
Sbjct: 6   KIGEGTYGVVYKARDKLTGEIVAIKKI-KLRFE---SEGIPKT---ALR-EIKLLKELNH 57

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
            NI+KL   F     LY   LV+E+M + +L+  +      L         + + QGLA+
Sbjct: 58  PNIIKLLDVFRHKGDLY---LVFEFM-DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAF 113

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            H HG    I+HRD+K  N+L++     K+ADFG+A+     G      T    T  Y A
Sbjct: 114 CHSHG----ILHRDLKPENLLINTEGVLKLADFGLARSF---GSPVRPYTHYVVTRWYRA 166

Query: 708 PEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
           PE     K  +T  D++S G +  EL++ R
Sbjct: 167 PELLLGDKGYSTPVDIWSVGCIFAELLSRR 196

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 96.9 bits (241), Expect = 3e-22
 Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 38/283 (13%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G   + Y+  D+ +G ++AVK++   R   S    +Q ++ + L+ E+  +  + H 
Sbjct: 8   LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSS----EQEEVVEALRKEIRLMARLNHP 63

Query: 593 NIVKLY---CYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFG----VAQ 644
           +I+++    C  S    NL V E+M  G++   L K G        +  +       + +
Sbjct: 64  HIIRMLGATCEDSHF--NLFV-EWMAGGSVSHLLSKYG------AFKEAVIINYTEQLLR 114

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARG-GKDSTTTVIAGT 702
           GL+YLH    + IIHRD+K  N+L+D   Q  ++ADFG A  L A+G G       + GT
Sbjct: 115 GLSYLHE---NQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGT 171

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
             ++APE     +    CDV+S G V++E+ T + P   +   N      +  K+ +   
Sbjct: 172 IAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNH---LALIFKIASATT 228

Query: 763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
              +  + LS   RD       + +RC    P  RP   E+++
Sbjct: 229 APSI-PEHLSPGLRD-------VTLRCLELQPEDRPPSRELLK 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 75/287 (26%), Positives = 126/287 (43%), Gaps = 49/287 (17%)

Query: 534 VGQGGSGTVYK--IDLNSGEV--VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G G  G V +  + L   +   VA+K L     K  +SD  +L       TE   +G  
Sbjct: 12  IGGGEFGEVCRGRLKLPGKKEIDVAIKTL-----KAGSSDKQRL----DFLTEASIMGQF 62

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
            H NI++L    +     +++ EYM NG+L   L +            +  G+A G+ YL
Sbjct: 63  DHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYL 122

Query: 650 -HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG--YL 706
                    +HRD+ + NIL++ N   KV+DFG+++ L      ++T T   G     + 
Sbjct: 123 SEMNY----VHRDLAARNILVNSNLVCKVSDFGLSRRL---EDSEATYTTKGGKIPIRWT 175

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           APE     K T+  DV+SFG+V+ E+++ G +P  D    N+++I               
Sbjct: 176 APEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWD--MSNQDVI--------------- 218

Query: 766 VLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              K +   +R     D    + ++ + C  K    RPT +++V  L
Sbjct: 219 ---KAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTL 262

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 96.9 bits (242), Expect = 5e-22
 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 35/219 (15%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+G+G    VYK  D  +G +VA+KK+     K+      +  ++     E++ L  ++
Sbjct: 6   KKLGEGTYAVVYKARDKETGRIVAIKKI-----KLGERKEAKDGINFTALREIKLLQELK 60

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA------- 643
           H NI+ L   F       LV+E+M   +L     + ++         I    A       
Sbjct: 61  HPNIIGLLDVFGHKSNINLVFEFME-TDL-----EKVIK-----DKSIVLTPADIKSYML 109

Query: 644 ---QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
              +GL YLH    + I+HRD+K  N+L+  +   K+ADFG+A+   +   K  T  V+ 
Sbjct: 110 MTLRGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRK-MTHQVV- 164

Query: 701 GTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKP 738
            T  Y APE  + ++      D++S G +  EL+  R P
Sbjct: 165 -TRWYRAPELLFGARHYGVGVDMWSVGCIFAELLL-RVP 201

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 95.6 bits (238), Expect = 7e-22
 Identities = 80/287 (27%), Positives = 133/287 (46%), Gaps = 55/287 (19%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQL--QLDKGLKTEVETLGNIR 590
           +G G  G+VY+ ++L+ G+  AVK+       VS +D  Q   +  K L+ E+  L  ++
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKE-------VSLADDGQTGQEAVKQLEQEIALLSKLQ 60

Query: 591 HKNIVKLYCYFSSLYCNLLVY-EYMPNGNL------WDALHKGLVHLDWPTRHKIAFGVA 643
           H NIV+ Y        NL ++ E +P G+L      + +  + ++ L   TR  +     
Sbjct: 61  HPNIVQ-YLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRL--YTRQILL---- 113

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            GL YLH       +HRDIK  NIL+D N   K+ADFG+AK +       S      G+ 
Sbjct: 114 -GLEYLHD---RNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKS----FKGSP 165

Query: 704 GYLAPEY-----AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
            ++APE       Y   A    D++S G  ++E+ TG+ P     G           K+ 
Sbjct: 166 YWMAPEVIAQQGGYGLAA----DIWSLGCTVLEMATGKPPWSQLEG------VAAVFKIG 215

Query: 759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             + +  + D  LS   +D +++ L+       + P+ RPT  E+++
Sbjct: 216 RSKELPPIPD-HLSDEAKDFILKCLQ-------RDPSLRPTAAELLE 254

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 96.4 bits (240), Expect = 7e-22
 Identities = 73/193 (37%), Positives = 99/193 (51%), Gaps = 23/193 (11%)

Query: 548 NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKL--YCYFSSLY 605
           N+GEVVAVKKL         S  + L+     + E+E L +++H NIVK    CY S+  
Sbjct: 31  NTGEVVAVKKL-------QHSTAEHLR---DFEREIEILKSLQHDNIVKYKGVCY-SAGR 79

Query: 606 CNL-LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKS 664
            NL LV EY+P G+L D L K    LD       A  + +G+ YL        +HRD+ +
Sbjct: 80  RNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGS---KRYVHRDLAT 136

Query: 665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG---TYGYLAPEYAYSSKATTKCD 721
            NIL++   + K+ DFG+ KVL     K+       G    + Y APE    SK +   D
Sbjct: 137 RNILVESENRVKIGDFGLTKVLPQ--DKEYYKVREPGESPIFWY-APESLTESKFSVASD 193

Query: 722 VYSFGVVLMELIT 734
           V+SFGVVL EL T
Sbjct: 194 VWSFGVVLYELFT 206

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 93.4 bits (233), Expect = 6e-21
 Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 31/217 (14%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
               ++G G  G+VY   +  +GE+VA+KK+     K   S  + + L      EV++L 
Sbjct: 2   KVIKQLGDGTFGSVYLARNKETGELVAIKKM----KKKFYSWEECMNL-----REVKSLR 52

Query: 588 NI-RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQG 645
            +  H NIVKL   F        V+EYM  GNL+  +  +            I + + QG
Sbjct: 53  KLNEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQG 111

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           LA++H HG      HRD+K  N+L+      K+ADFG+A+ +++R     T  V   T  
Sbjct: 112 LAHIHKHGFF----HRDLKPENLLVSGPEVVKIADFGLAREIRSR--PPYTDYV--STRW 163

Query: 705 YLAPEY-----AYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE      +YSS      D+++ G ++ EL T R
Sbjct: 164 YRAPEILLRSTSYSSPV----DIWALGCIMAELYTLR 196

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 92.3 bits (229), Expect = 1e-20
 Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 30/283 (10%)

Query: 529 TEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
           T+   +G+G  GTVY    N G+++AVK++       S     + + +K L+ EV+ L +
Sbjct: 3   TKGEVLGKGAYGTVYCGLTNQGQLIAVKQV---ELDTSNVLAAEKEYEK-LQEEVDLLKS 58

Query: 589 IRHKNIVKLYCYFSSLY--CNLLVY-EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           ++H NIV+   Y  +      + ++ E++P G++   L++    L  P   K    +  G
Sbjct: 59  LKHVNIVQ---YLGTCLDDNTISIFMEFVPGGSISSILNR-FGPLPEPVFCKYTKQILDG 114

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL---QARGGKDSTTTVIAGT 702
           +AYLH+   + ++HRDIK  N++L  N   K+ DFG A+ L      G   +    + GT
Sbjct: 115 VAYLHN---NCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGT 171

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
             ++APE    S    K D++S G  + E+ TG+ P+     D    ++++        G
Sbjct: 172 PYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLAS--MDRLAAMFYIG----AHRG 225

Query: 763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           +M  L    S +  D           C ++    RP+  ++++
Sbjct: 226 LMPRLPDSFSAAAID-------FVTSCLTRDQHERPSALQLLR 261

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 92.1 bits (229), Expect = 1e-20
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 34/225 (15%)

Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSA---SDTDQLQLDKGLKTE 582
           E  T + K+G G  G V++             LW  R +V+       D L+     + E
Sbjct: 6   EEFTLERKLGSGYFGEVWE------------GLWKNRVRVAIKILKSDDLLKQQD-FQKE 52

Query: 583 VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH--KGLVHLDWPTRHKIAF 640
           V+ L  +RHK+++ L+   S      ++ E M  G+L   L   +G V L   +   +A 
Sbjct: 53  VQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQV-LPVASLIDMAC 111

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD----STT 696
            VA+G+AYL        IHRD+ + NIL+  +   KVADFG+A+++     K+    S+ 
Sbjct: 112 QVAEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLARLI-----KEDVYLSSD 163

Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
             I   Y + APE A     +TK DV+SFG++L E+ T G+ P  
Sbjct: 164 KKIP--YKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYP 206

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 92.2 bits (229), Expect = 2e-20
 Identities = 79/278 (28%), Positives = 129/278 (46%), Gaps = 33/278 (11%)

Query: 534 VGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G+V K+  + +G V+A K +      + A  + + Q+ +    E++ +   R  
Sbjct: 13  LGAGNGGSVSKVKHIPTGTVMAKKVVH-----IGAKSSVRKQILR----ELQIMHECRSP 63

Query: 593 NIVKLYCYFSSLYCN--LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL- 649
            IV  Y  F  L  N   +  E+M  G+L D ++K    +      KIA  V +GL YL 
Sbjct: 64  YIVSFYGAF--LNENNICMCMEFMDCGSL-DRIYKKGGPIPVEILGKIAVAVVEGLTYLY 120

Query: 650 --HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
             H      I+HRDIK +NIL++   Q K+ DFG++  L      +S      GT  Y++
Sbjct: 121 NVHR-----IMHRDIKPSNILVNSRGQIKLCDFGVSGEL-----INSIADTFVGTSTYMS 170

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           PE     K T K DV+S G+ ++EL  G+ P      D+      + I +D  + I++  
Sbjct: 171 PERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGI-LDLLQQIVQEP 229

Query: 768 DKKL-SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
             +L S  F +++   +     C  K P  RPT  ++ 
Sbjct: 230 PPRLPSSDFPEDLRDFVD---ACLLKDPTERPTPQQLC 264

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 91.9 bits (228), Expect = 2e-20
 Identities = 73/275 (26%), Positives = 116/275 (42%), Gaps = 30/275 (10%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +  +G G  GTVYK   L +  ++AVK +    T         ++L K + +E+E L   
Sbjct: 6   QEILGHGNGGTVYKAYHLLTRRILAVKVIPLDIT---------VELQKQIMSELEILYKC 56

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
               I+  Y  F       +  E+M  G+L D   K    +      +IA  V +GL YL
Sbjct: 57  DSPYIIGFYGAFFVENRISICTEFMDGGSL-DVYRK----IPEHVLGRIAVAVVKGLTYL 111

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
              L   I+HRD+K +N+L++   Q K+ DFG++  L      +S      GT  Y+APE
Sbjct: 112 W-SL--KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLV-----NSIAKTYVGTNAYMAPE 163

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
                +     DV+S G+  MEL  GR P      +  +++    ++    E    +   
Sbjct: 164 RISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVG 223

Query: 770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
           + S  F   + Q       C  K P  RP    ++
Sbjct: 224 QFSEKFVHFITQ-------CMRKQPKERPAPENLM 251

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 91.5 bits (228), Expect = 3e-20
 Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            +G+G  G VYK ID  + +VVA+K +      +  ++ +   + +    E++ L   R 
Sbjct: 8   CIGKGSFGEVYKAIDKRTNQVVAIKVI-----DLEEAEDEIEDIQQ----EIQFLSQCRS 58

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF---GVAQG 645
             I K Y  F   S L+   ++ EY   G+  D L  G +         IAF    V  G
Sbjct: 59  PYITKYYGSFLKGSKLW---IIMEYCGGGSCLDLLKPGKLDET-----YIAFILREVLLG 110

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L YLH       IHRDIK+ NILL      K+ADFG++  L +   K +T     GT  +
Sbjct: 111 LEYLHEEGK---IHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFV---GTPFW 164

Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           +APE    S    K D++S G+  +EL  G  P+ D
Sbjct: 165 MAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSD 200

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 91.5 bits (228), Expect = 4e-20
 Identities = 73/218 (33%), Positives = 103/218 (47%), Gaps = 34/218 (15%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V  +    SG+  A+K L   + K+        Q++  +  E   L +IRH 
Sbjct: 9   LGTGSFGRVMLVRHKGSGKYYALKIL--SKAKIVKLK----QVEH-VLNEKRILQSIRHP 61

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQ---G 645
            +V LY  F   S+LY   LV EY+P G L+  L K G             F  AQ    
Sbjct: 62  FLVNLYGSFQDDSNLY---LVMEYVPGGELFSHLRKSGRFPEPV-----ARFYAAQVVLA 113

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L YLH      I++RD+K  N+LLD +   K+ DFG AK ++ R      T  + GT  Y
Sbjct: 114 LEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR------TYTLCGTPEY 164

Query: 706 LAPEYAYSSKATTK-CDVYSFGVVLMELITGRKPVEDD 742
           LAPE    SK   K  D ++ G+++ E++ G  P  DD
Sbjct: 165 LAPE-IILSKGYGKAVDWWALGILIYEMLAGYPPFFDD 201

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 91.0 bits (226), Expect = 4e-20
 Identities = 65/216 (30%), Positives = 97/216 (44%), Gaps = 28/216 (12%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH- 591
           +G+G  G VY+   + +G VVA+K        +   DT    +   ++ EV  L  +R  
Sbjct: 9   IGRGAYGAVYRGKHVPTGRVVALK--------IINLDTPDDDVSD-IQREVALLSQLRQS 59

Query: 592 --KNIVKLY-CYF--SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
              NI K Y  Y     L+   ++ EY   G++   +  G   +       I   V   L
Sbjct: 60  QPPNITKYYGSYLKGPRLW---IIMEYAEGGSVRTLMKAG--PIAEKYISVIIREVLVAL 114

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            Y+H      +IHRDIK+ NIL+      K+ DFG+A +L     K ST     GT  ++
Sbjct: 115 KYIHK---VGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRST---FVGTPYWM 168

Query: 707 APEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVED 741
           APE     K   TK D++S G+ + E+ TG  P  D
Sbjct: 169 APEVITEGKYYDTKADIWSLGITIYEMATGNPPYSD 204

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 90.5 bits (224), Expect = 4e-20
 Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +GQG  G VY   D+++G  +A K++  Q    S   + ++     L+ E++ L N++H+
Sbjct: 10  LGQGAFGRVYLCYDVDTGRELAAKQV--QFDPESPETSKEVS---ALECEIQLLKNLQHE 64

Query: 593 NIVKLY-CYFSSLYCNLLVY-EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
            IV+ Y C        L ++ EYMP G++ D L K    L      K    + +G++YLH
Sbjct: 65  RIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQL-KAYGALTESVTRKYTRQILEGMSYLH 123

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
             +   I+HRDIK  NIL D     K+ DFG +K LQ      +    + GT  +++PE 
Sbjct: 124 SNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEV 180

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP 738
                   K DV+S G  ++E++T + P
Sbjct: 181 ISGEGYGRKADVWSLGCTVVEMLTEKPP 208

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 90.4 bits (224), Expect = 5e-20
 Identities = 88/281 (31%), Positives = 127/281 (45%), Gaps = 44/281 (15%)

Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++    K+G G  G V+    N    VAVK L    T    S  ++ Q+ K L      
Sbjct: 6   ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTL-KPGTMSPESFLEEAQIMKKL------ 58

Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGV 642
               RH  +V+LY   S   +Y   +V EYM  G+L D L  G    L  P    +A  V
Sbjct: 59  ----RHDKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQV 111

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           A G+AY+        IHRD++S NIL+      K+ADFG+A++++     D+  T   G 
Sbjct: 112 AAGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLARLIE-----DNEYTARQGA 163

Query: 703 ---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVD 758
                + APE A   + T K DV+SFG++L EL+T GR P      +N+ ++  V     
Sbjct: 164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPG--MNNREVLEQV----- 216

Query: 759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT 799
            + G      +    S  + M+Q       C  K P  RPT
Sbjct: 217 -ERGYRMPCPQDCPISLHELMLQ-------CWKKDPEERPT 249

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 89.8 bits (223), Expect = 7e-20
 Identities = 69/274 (25%), Positives = 119/274 (43%), Gaps = 33/274 (12%)

Query: 534 VGQG--GSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +G+G  G  T+Y+   +   VV     W +   V+ +   + +    L  E+  L  ++H
Sbjct: 8   LGKGAFGEATLYRRTEDDSLVV-----WKE---VNLTRLSEKERRDAL-NEIVILSLLQH 58

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLH 650
            NI+  Y +F      L+  EY   G L+D +  +     +        F +   ++Y+H
Sbjct: 59  PNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIH 118

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + I+HRDIK+ NI L      K+ DFGI+K+L   G + S    + GT  Y++PE 
Sbjct: 119 K---AGILHRDIKTLNIFLTKAGLIKLGDFGISKIL---GSEYSMAETVVGTPYYMSPEL 172

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
               K   K D+++ G VL EL+T ++  +     N   +     K+        V    
Sbjct: 173 CQGVKYNFKSDIWALGCVLYELLTLKRTFD---ATNPLNLVV---KIVQGNYTPVV---- 222

Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
               +  E+I ++        + P  RPT +EV+
Sbjct: 223 --SVYSSELISLVH---SLLQQDPEKRPTADEVL 251

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 89.9 bits (223), Expect = 8e-20
 Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 26/213 (12%)

Query: 528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +T K+K+G G  G VY           V K +S    V     D +++++ LK E   + 
Sbjct: 8   ITMKHKLGGGQYGEVY---------EGVWKKYSLTVAVKTLKEDTMEVEEFLK-EAAVMK 57

Query: 588 NIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQ 644
            I+H N+V+L   C     +   ++ E+M  GNL D L +     ++      +A  ++ 
Sbjct: 58  EIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 115

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT-- 702
            + YL        IHRD+ + N L+  N+  KVADFG+++++        T T  AG   
Sbjct: 116 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT-----GDTYTAHAGAKF 167

Query: 703 -YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
              + APE    +K + K DV++FGV+L E+ T
Sbjct: 168 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 200

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 89.4 bits (222), Expect = 8e-20
 Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 21/207 (10%)

Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           K+G+G  G VYK  L     VAVK         +   T    L +    E E L    H 
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVK---------TCRSTLPPDLKRKFLQEAEILKQYDHP 52

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NIVKL           +V E +P G+L   L K    L      +++   A G+ YL   
Sbjct: 53  NIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLES- 111

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT----YGYLAP 708
                IHRD+ + N L+  N   K++DFG++     R  +    TV  G       + AP
Sbjct: 112 --KNCIHRDLAARNCLVGENNVLKISDFGMS-----REEEGGIYTVSDGLKQIPIKWTAP 164

Query: 709 EYAYSSKATTKCDVYSFGVVLMELITG 735
           E     + T++ DV+S+G++L E  + 
Sbjct: 165 EALNYGRYTSESDVWSYGILLWETFSL 191

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 41/287 (14%)

Query: 533 KVGQGGSGTVYKIDLNS--GEV--VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
           K+G G  G V + + ++  G+V  VAVK L  +  K+S    D L+       E   + +
Sbjct: 2   KLGDGSFGVVRRGEWSTSGGKVIPVAVKCL--KSDKLSDIMDDFLK-------EAAIMHS 52

Query: 589 IRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQG 645
           + H+N+++LY       L   ++V E  P G+L D L K  L H    T    A  +A G
Sbjct: 53  LDHENLIRLYGVVLTHPL---MMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANG 109

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           + YL        IHRD+ + NILL  + + K+ DFG+ + L            +   + +
Sbjct: 110 MRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAW 166

Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE   +   +   DV+ FGV L E+ T G +P             W  +   +   I+
Sbjct: 167 CAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEP-------------WAGL---SGSQIL 210

Query: 765 EVLDKKLSGSFRDEMI--QVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           + +DK+     R E     +  + ++C + +PA RPT   + + L E
Sbjct: 211 KKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLPE 257

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 90.7 bits (226), Expect = 1e-19
 Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 53/238 (22%)

Query: 522 REILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLW--------SQRT--KVSASDT 570
           + IL       K+G+G  G V+K ID  + EVVA+KK++        +QRT  ++     
Sbjct: 3   KHILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMF--- 59

Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS-----LYCNLLVYEYMPNGNLWDALHK 625
             LQ           LG+  H NIVKL     +     +Y   LV+EYM   +L   +  
Sbjct: 60  --LQ----------ELGD--HPNIVKLLNVIKAENDKDIY---LVFEYMET-DLHAVIRA 101

Query: 626 GL---VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
            +   VH     +  I + + + L Y+H G    +IHRD+K +NILL+ + + K+ADFG+
Sbjct: 102 NILEDVH-----KRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGL 153

Query: 683 AKVLQARGGKDST---TTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           A+ L            T  +A T  Y APE    S   TK  D++S G +L E++ G+
Sbjct: 154 ARSLSELEENPENPVLTDYVA-TRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGK 210

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 85/319 (26%), Positives = 138/319 (43%), Gaps = 71/319 (22%)

Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           QR+ +    E   +G+G  G V+  +       N  E+VAVK L     K +AS+  +  
Sbjct: 3   QRDTIVLKRE---LGEGAFGKVFLGECYHLEPENDKELVAVKTL-----KETASNDARKD 54

Query: 575 LDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALH------KG 626
            ++    E E L N +H+NIVK Y  C        ++V+EYM +G+L   L         
Sbjct: 55  FER----EAELLTNFQHENIVKFYGVCTEGDPP--IMVFEYMEHGDLNKFLRSHGPDAAF 108

Query: 627 LVHLDWPTR-------HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD 679
           L   D P          +IA  +A G+ YL        +HRD+ + N L+  +   K+ D
Sbjct: 109 LKSPDSPMGELTLSQLLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYDLVVKIGD 165

Query: 680 FGIAKVLQARGGKDSTTT---VIAGT----YGYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
           FG+++        D  TT    + G       ++ PE     K TT+ DV+SFGVVL E+
Sbjct: 166 FGMSR--------DVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEI 217

Query: 733 IT-GRKPVEDDFG-DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCT 790
            T G++P    +G  N+ +I  +       +G +           R    +V  I + C 
Sbjct: 218 FTYGKQPW---YGLSNEEVIECI------TQGRLL-------QRPRTCPSEVYDIMLGCW 261

Query: 791 SKSPATRPTMNEVVQLLAE 809
            + P  R  + ++ + L +
Sbjct: 262 KRDPQQRINIKDIHERLQK 280

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 88.6 bits (219), Expect = 2e-19
 Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 29/220 (13%)

Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++    K+GQG  G V+    N    VA+K L                + +    E + 
Sbjct: 6   ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTL-----------KPGTMMPEAFLQEAQI 54

Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGV 642
           +  +RH  +V LY   S   +Y   +V E+M  G+L D L +G   +L  P    +A  +
Sbjct: 55  MKKLRHDKLVPLYAVVSEEPIY---IVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQI 111

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           A G+AY+        IHRD+++ NIL+  N   K+ADFG+A++++     D+  T   G 
Sbjct: 112 ADGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARLIE-----DNEYTARQGA 163

Query: 703 ---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
                + APE A   + T K DV+SFG++L EL+T GR P
Sbjct: 164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVP 203

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 88.2 bits (218), Expect = 3e-19
 Identities = 75/221 (33%), Positives = 113/221 (51%), Gaps = 31/221 (14%)

Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 6   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 54

Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 55  MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 110

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 111 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 162

Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
                 + APE A   + T K DV+SFG++L EL T GR P
Sbjct: 163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 203

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 22/207 (10%)

Query: 538 GSGTVYKIDL--------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           G G   K++L        N+GE VAVK L  +      +D         LK E+E L N+
Sbjct: 13  GEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIAD---------LKKEIEILRNL 63

Query: 590 RHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
            H+NIVK    C         L+ E++P+G+L + L +    ++   + K A  + +G+ 
Sbjct: 64  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMD 123

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YL        +HRD+ + N+L++  +Q K+ DFG+ K ++      +    +     + A
Sbjct: 124 YLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYA 180

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELIT 734
           PE    SK     DV+SFGV L EL+T
Sbjct: 181 PECLIQSKFYIASDVWSFGVTLYELLT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 87.5 bits (217), Expect = 7e-19
 Identities = 88/319 (27%), Positives = 142/319 (44%), Gaps = 70/319 (21%)

Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGE----VVAVKKLWSQRTKVSASDTDQLQL 575
           R + E   EK KV G G  GTVYK + +  GE     VA+K L   R + S     ++ L
Sbjct: 2   RILKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVL---REETSPKANKEI-L 57

Query: 576 DKGLKTEVETLGNIRHKNIVKLYCY-FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
           D+        + ++ H ++V+L     SS     L+ + MP G L D +     ++   +
Sbjct: 58  DEAY-----VMASVDHPHVVRLLGICLSSQVQ--LITQLMPLGCLLDYVRNHKDNIG--S 108

Query: 635 RHKIAFGV--AQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ---- 687
           ++ + + V  A+G++YL    L    +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 109 QYLLNWCVQIAKGMSYLEEKRL----VHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEK 164

Query: 688 ---ARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF 743
              A GGK      I     ++A E       T K DV+S+GV + EL+T G KP E   
Sbjct: 165 EYHAEGGK----VPIK----WMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEG-- 214

Query: 744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRP 798
                        +   E I ++L+K      R        I V  + ++C      +RP
Sbjct: 215 -------------IPAVE-IPDLLEKGE----RLPQPPICTIDVYMVLVKCWMIDAESRP 256

Query: 799 TMNEVVQLLAE--ADPCRF 815
           T  E++   ++   DP R+
Sbjct: 257 TFKELINEFSKMARDPQRY 275

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 87.7 bits (217), Expect = 8e-19
 Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 25/214 (11%)

Query: 529 TEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTVY  ID+ +G+ VA+K++       +     + +L   +  E+  + 
Sbjct: 22  TRFEKIGQGASGTVYTAIDVATGQEVAIKQM-------NLQQQPKKEL---IINEILVMR 71

Query: 588 NIRHKNIVKLYCYFSS-LYCNLL--VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             +H NIV    Y  S L  + L  V EY+  G+L D + +    +D      +     Q
Sbjct: 72  ENKHPNIVN---YLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQ 126

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L +LH    + +IHRDIKS NILL ++   K+ DFG    +     K ST   + GT  
Sbjct: 127 ALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST---MVGTPY 180

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           ++APE         K D++S G++ +E++ G  P
Sbjct: 181 WMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 85.8 bits (212), Expect = 2e-18
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 29/218 (13%)

Query: 525 LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           L+ +T    +G+G  G V + +  +G+ VAVK +   +  V+A    Q  L+     E  
Sbjct: 5   LQKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNI---KCDVTA----QAFLE-----ETA 51

Query: 585 TLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFG 641
            +  + HKN+V+L      + LY   +V E M  GNL + L  +G   +      + +  
Sbjct: 52  VMTKLHHKNLVRLLGVILHNGLY---IVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLD 108

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           VA+G+ YL    L   +HRD+ + NIL+  +   KV+DFG+A+V     G D++   +  
Sbjct: 109 VAEGMEYLESKKL---VHRDLAARNILVSEDGVAKVSDFGLARV--GSMGVDNSKLPVKW 163

Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           T    APE     K ++K DV+S+GV+L E+ + GR P
Sbjct: 164 T----APEALKHKKFSSKSDVWSYGVLLWEVFSYGRAP 197

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 85.9 bits (212), Expect = 2e-18
 Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +GQG  G VY   D ++G  +AVK++  Q    S   + ++     L+ E++ L N+ H+
Sbjct: 10  LGQGAFGRVYLCYDADTGRELAVKQV--QFDPESPETSKEVN---ALECEIQLLKNLLHE 64

Query: 593 NIVKLY-CYFSSLYCNLLVY-EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
            IV+ Y C    +   L ++ E+MP G++ D L K    L      K    + +G++YLH
Sbjct: 65  RIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQL-KSYGALTENVTRKYTRQILEGVSYLH 123

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
             +   I+HRDIK  NIL D     K+ DFG +K LQ      +    + GT  +++PE 
Sbjct: 124 SNM---IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEV 180

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP 738
                   K D++S G  ++E++T + P
Sbjct: 181 ISGEGYGRKADIWSVGCTVVEMLTEKPP 208

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 85.5 bits (211), Expect = 2e-18
 Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 18/211 (8%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK---GLKTEVETLGNI 589
           +G+G  G VY   D ++G  +AVK++          D D  +  K    L+ E++ L N+
Sbjct: 10  LGRGAFGEVYLCYDADTGRELAVKQV--------PFDPDSQETSKEVNALECEIQLLKNL 61

Query: 590 RHKNIVKLY-CYFSSLYCNLLVY-EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
           RH  IV+ Y C        L ++ EYMP G++ D L K    L      +    + QG++
Sbjct: 62  RHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQL-KAYGALTENVTRRYTRQILQGVS 120

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH  +   I+HRDIK  NIL D     K+ DFG +K +Q      +    + GT  +++
Sbjct: 121 YLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMS 177

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           PE         K DV+S    ++E++T + P
Sbjct: 178 PEVISGEGYGRKADVWSVACTVVEMLTEKPP 208

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 35/225 (15%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G+G  G VYK     +G++VA+K        +     D+   ++ +K E   L     H
Sbjct: 14  IGEGTYGKVYKARHKKTGQLVAIK--------IMDIIEDE---EEEIKEEYNILRKYSNH 62

Query: 592 KNIVKLY-CYFSSLYCNL-----LVYEYMPNGNLWDALHKGLVHLDWPTR-HKIAF---G 641
            NI   Y  +             LV E    G++ D L KGL       +   IA+    
Sbjct: 63  PNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTD-LVKGLRKKGKRLKEEWIAYILRE 121

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
             +GLAYLH    + +IHRDIK  NILL  N + K+ DFG++  L +  G+ +T     G
Sbjct: 122 TLRGLAYLHE---NKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFI---G 175

Query: 702 TYGYLAPE-----YAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           T  ++APE         +    + DV+S G+  +EL  G+ P+ D
Sbjct: 176 TPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCD 220

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 85.6 bits (212), Expect = 3e-18
 Identities = 80/301 (26%), Positives = 125/301 (41%), Gaps = 56/301 (18%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           +  +I E + E   +G G  G VYK       + A  K+      +     ++L+     
Sbjct: 2   NPNDIWEIIGE---LGDGAFGKVYKAQHKETGLFAAAKI------IQIESEEELE---DF 49

Query: 580 KTEVETLGNIRHKNIVKLYCYFSSLYCNLL--VYEYMPNG---NLWDALHKGLVHLDWPT 634
             E++ L   +H NIV LY  +   Y N L  + E+   G   ++   L +GL     P 
Sbjct: 50  MVEIDILSECKHPNIVGLYEAY--FYENKLWILIEFCDGGALDSIMLELERGL---TEPQ 104

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI-AKVLQARGGKD 693
              +   + + L +LH      +IHRD+K+ NILL ++   K+ADFG+ AK       +D
Sbjct: 105 IRYVCRQMLEALNFLHSHK---VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRD 161

Query: 694 STTTVIAGTYGYLAPEY---------AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
           +      GT  ++APE           Y  KA    D++S G+ L+EL     P  +   
Sbjct: 162 T----FIGTPYWMAPEVVACETFKDNPYDYKA----DIWSLGITLIELAQMEPPHHE--- 210

Query: 745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
              N +  V +K+   E        K S SF D           C  K P  RPT  E++
Sbjct: 211 --LNPMR-VLLKILKSEPPTLDQPSKWSSSFND-------FLKSCLVKDPDDRPTAAELL 260

Query: 805 Q 805
           +
Sbjct: 261 K 261

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 84.3 bits (209), Expect = 5e-18
 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 30/213 (14%)

Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V  +    + ++ A+K +       +     +    + +  E   L  + H 
Sbjct: 8   IGKGAFGKVCIVQKRDTKKMFAMKYM-------NKQKCVEKGSVRNVLNERRILQELNHP 60

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNL-WDALHKGLVHLDWPTRHKIAFGVAQ---G 645
            +V L+  F    ++Y   LV + +  G+L +    K        +  ++ F + +    
Sbjct: 61  FLVNLWYSFQDEENMY---LVVDLLLGGDLRYHLSQKVKF-----SEEQVKFWICEIVLA 112

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L YLH      IIHRDIK  NILLD      + DF IA  +      D+ TT  +GT GY
Sbjct: 113 LEYLHSKG---IIHRDIKPDNILLDEQGHVHITDFNIATKVT----PDTLTTSTSGTPGY 165

Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           +APE       +   D +S GV   E + G++P
Sbjct: 166 MAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRP 198

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 84.8 bits (210), Expect = 6e-18
 Identities = 87/299 (29%), Positives = 131/299 (43%), Gaps = 50/299 (16%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            VG+G  G V K     +G++VA+KK             D   + K    E+  L  +RH
Sbjct: 8   LVGEGSYGMVMKCKHKETGQIVAIKKFLESE--------DDKMVKKIAMREIRMLKQLRH 59

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           +N+V L   F       LV+E++ +  L D L K    LD     K  F + +G+ + H 
Sbjct: 60  ENLVNLIEVFRRKKRLYLVFEFVDHTVL-DDLEKYPNGLDESRVRKYLFQILRGIEFCH- 117

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                IIHRDIK  NIL+  +   K+ DFG A+ L A G  +  T  +A T  Y APE  
Sbjct: 118 --SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG--EVYTDYVA-TRWYRAPELL 172

Query: 712 Y-SSKATTKCDVYSFGVVLMELITGRK--PVEDD----------FGD---------NKNI 749
              +K     D+++ G ++ E++TG    P + D           G+          KN 
Sbjct: 173 VGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNP 232

Query: 750 IYWVSIKVDTKEGIMEVLDK---KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           ++      + KE  +E L+K   KLSG   D   Q LRI        P  RP+ ++++ 
Sbjct: 233 LFAGMRLPEVKE--IEPLEKRFPKLSGLVLDLAKQCLRI-------DPDDRPSSSQLLH 282

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 84.5 bits (209), Expect = 7e-18
 Identities = 82/295 (27%), Positives = 130/295 (44%), Gaps = 50/295 (16%)

Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLD----KGL 579
           +E + E   +G+G  G+VYK+    +G  +A+K++             +L+LD      +
Sbjct: 3   IEVLDE---LGKGNYGSVYKVLHRPTGVTMAMKEI-------------RLELDESKFNQI 46

Query: 580 KTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH---LDWPTRH 636
             E++ L       IV  Y  F       +  EYM  G+L D L+ G V    +      
Sbjct: 47  IMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSL-DKLYAGGVATEGIPEDVLR 105

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
           +I + V +GL +L       IIHRD+K TN+L++ N Q K+ DFG++  L A   K +  
Sbjct: 106 RITYAVVKGLKFLKEEH--NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNI- 162

Query: 697 TVIAGTYGYLAPEYAYSSKA------TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
               G   Y+APE   S         T + DV+S G+ ++E+  GR P   +     NI 
Sbjct: 163 ----GCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYA--NIF 216

Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             +S  VD   G    L    S   +D          +C +K P  RPT  ++++
Sbjct: 217 AQLSAIVD---GDPPTLPSGYSDDAQD-------FVAKCLNKIPNRRPTYAQLLE 261

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 85.3 bits (212), Expect = 8e-18
 Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 42/221 (19%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT--EVETLGNIR 590
           +G G  G V   +D  +G  VA+KK+         S+     +D   +   E++ L ++R
Sbjct: 8   IGSGAYGVVCSAVDKRTGRKVAIKKI---------SNVFDDLID-AKRILREIKLLRHLR 57

Query: 591 HKNIVKL--------YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK-IAFG 641
           H+NI+ L           F+ +Y   +V E M      D LHK ++    P     I + 
Sbjct: 58  HENIIGLLDILRPPSPEDFNDVY---IVTELMET----D-LHK-VIKSPQPLTDDHIQYF 108

Query: 642 VAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT- 697
           + Q   GL YLH    + +IHRD+K +NIL++ N   K+ DFG+A+ +     +    T 
Sbjct: 109 LYQILRGLKYLHS---ANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTE 165

Query: 698 -VIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
            V+  T  Y APE   SS   TK  D++S G +  EL+T +
Sbjct: 166 YVV--TRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRK 204

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 84.2 bits (208), Expect = 1e-17
 Identities = 83/291 (28%), Positives = 128/291 (43%), Gaps = 37/291 (12%)

Query: 534 VGQGGSGTV--YKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
           +G+G  G V  Y  D     +GE+VAVK L  +  +         Q   G K E+  L  
Sbjct: 12  LGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQ---------QNTSGWKKEINILKT 62

Query: 589 IRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           + H+NIVK    C         L+ EY+P G+L D L K  ++L        A  + +G+
Sbjct: 63  LYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNL--AQLLLFAQQICEGM 120

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA-----RGGKDSTTTVIAG 701
           AYLH       IHRD+ + N+LLD +   K+ DFG+AK +       R  +D  + V   
Sbjct: 121 AYLHS---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF-- 175

Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD--T 759
              + A E    +K +   DV+SFGV L EL+T     +      K     +  K    T
Sbjct: 176 ---WYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQS---PPKKFEEMIGPKQGQMT 229

Query: 760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEVVQLLAE 809
              ++E+L++ +         Q + I ++ C       RPT   ++ +L E
Sbjct: 230 VVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKE 280

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 32/229 (13%)

Query: 520 DQREILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D R  L+      K+G+G +G V    D ++G  VAVKK+          D  + Q  + 
Sbjct: 16  DPRSYLDNFV---KIGEGSTGIVCIATDKSTGRQVAVKKM----------DLRKQQRREL 62

Query: 579 LKTEVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR 635
           L  EV  + + +H NIV++Y  +     L+   +V E++  G L D +      ++    
Sbjct: 63  LFNEVVIMRDYQHPNIVEMYSSYLVGDELW---VVMEFLEGGALTDIVTH--TRMNEEQI 117

Query: 636 HKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGI-AKVLQARGGKD 693
             +   V + L++LH  G    +IHRDIKS +ILL  + + K++DFG  A+V +    + 
Sbjct: 118 ATVCLAVLKALSFLHAQG----VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRK 173

Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           S    + GT  ++APE        T+ D++S G++++E++ G  P  ++
Sbjct: 174 S----LVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNE 218

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 48/226 (21%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKK-------LWSQRTKVSASDTDQLQLDKGLKTE 582
            + +G+G  G V       +G  VA+KK        + QRT               L+ E
Sbjct: 10  LSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRT---------------LR-E 53

Query: 583 VETLGNIRHKNIVKL--------YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
           ++ L   +H+NI+ +        +  F+ +Y   +V E M        L+K +       
Sbjct: 54  IKILRRFKHENIIGILDIIRPPSFESFNDVY---IVQELMETD-----LYKLIKTQHLSN 105

Query: 635 RHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
            H I + + Q   GL Y+H    + ++HRD+K +N+LL+ N   K+ DFG+A++      
Sbjct: 106 DH-IQYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHD 161

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKC-DVYSFGVVLMELITGR 736
                T    T  Y APE   +SK  TK  D++S G +L E+++ R
Sbjct: 162 HTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNR 207

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 83.2 bits (205), Expect = 2e-17
 Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 33/281 (11%)

Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E  T+  ++G+G  G V+K ID  + +VVA+K +  +  +    D  Q         E+ 
Sbjct: 4   ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQ---------EIT 54

Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            L       + K Y  +       ++ EY+  G+  D L  G    D      +   + +
Sbjct: 55  VLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAG--PFDEFQIATMLKEILK 112

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH       IHRDIK+ N+LL      K+ADFG+A  L     K +T     GT  
Sbjct: 113 GLDYLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNT---FVGTPF 166

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE    S   +K D++S G+  +EL  G  P  D        ++ + +     +   
Sbjct: 167 WMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSD--------MHPMRVLFLIPKNNP 218

Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             L  + S  F+ E I        C +K P+ RPT  E+++
Sbjct: 219 PTLTGEFSKPFK-EFIDA------CLNKDPSFRPTAKELLK 252

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 69/214 (32%), Positives = 101/214 (47%), Gaps = 24/214 (11%)

Query: 530 EK-NKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           EK N++G+G  G VY+  D  SGE+VA+KK+     +      D + +   L+ E+  L 
Sbjct: 10  EKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNER------DGIPI-SSLR-EITLLL 61

Query: 588 NIRHKNIVKLY--CYFSSLYCNLLVYEYMPN--GNLWDALHKGLVHLDWPTRHKIAFGVA 643
           N+RH NIV+L        L    LV EY      +L D +              +   + 
Sbjct: 62  NLRHPNIVELKEVVVGKHLDSIFLVMEYCEQDLASLLDNMPTPFSE---SQVKCLMLQLL 118

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           +GL YLH      IIHRD+K +N+LL      K+ADFG+A+       K  T  V+  T 
Sbjct: 119 RGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLP-AKPMTPKVV--TL 172

Query: 704 GYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
            Y APE        TT  D+++ G +L EL+  +
Sbjct: 173 WYRAPELLLGCTTYTTAIDMWAVGCILAELLAHK 206

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 83.7 bits (207), Expect = 3e-17
 Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 32/216 (14%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           N++G G  GTVYK I   +G + A+K ++         DT + Q+ +    E+E L ++ 
Sbjct: 80  NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH-----EDTVRRQICR----EIEILRDVN 130

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H N+VK +  F       ++ E+M  G+L +  H      D      +A  +  G+AYLH
Sbjct: 131 HPNVVKCHDMFDHNGEIQVLLEFMDGGSL-EGTHIA----DEQFLADVARQILSGIAYLH 185

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 I+HRDIK +N+L++     K+ADFG++++L A+      ++V  GT  Y++PE 
Sbjct: 186 R---RHIVHRDIKPSNLLINSAKNVKIADFGVSRIL-AQTMDPCNSSV--GTIAYMSPER 239

Query: 711 --------AYSSKATTKCDVYSFGVVLMELITGRKP 738
                   AY   A    D++S GV ++E   GR P
Sbjct: 240 INTDLNHGAYDGYAG---DIWSLGVSILEFYLGRFP 272

Length = 353

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 82.3 bits (203), Expect = 4e-17
 Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 22/213 (10%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G V  + + N+G++ A KKL  +R K  + +   L        E E L  +   
Sbjct: 1   LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMAL-------LEKEILEKVNSP 53

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNL-WDALHKGLVHLDWPTRHKIAFGVAQ---GLAY 648
            IV L   F S     LV   M  G+L +   + G   L+     ++    AQ   G+ +
Sbjct: 54  FIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEM---ERVIHYSAQITCGILH 110

Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           LH      I++RD+K  N+LLD     +++D G+A  ++ + GK  T T  AGT GY+AP
Sbjct: 111 LHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLA--VELKDGK--TITQRAGTNGYMAP 163

Query: 709 EYAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           E       +   D ++ G  + E++ GR P +D
Sbjct: 164 EILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKD 196

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 81.5 bits (202), Expect = 5e-17
 Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 31/227 (13%)

Query: 523 EILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E+LE       +G+G  GTV K+   + G+++  K++      ++  +  QL       +
Sbjct: 3   EVLE------TIGKGSFGTVRKVRRKSDGKILVWKEI--DYGNMTEKEKQQLV------S 48

Query: 582 EVETLGNIRHKNIVKLYCYF-----SSLYCNLLVYEYMPNGNLWDALHKGLV---HLDWP 633
           EV  L  ++H NIV+ Y         +LY   +V EY   G+L   + K      +++  
Sbjct: 49  EVNILRELKHPNIVRYYDRIIDRSNQTLY---IVMEYCEGGDLAQLIQKCKKERKYIEEE 105

Query: 634 TRHKIAFGVAQGLAYLHHGLLSP--IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
              +I   +   L   H+       ++HRD+K  NI LD N   K+ DFG+AK+L   G 
Sbjct: 106 FIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL---GH 162

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
             S      GT  Y++PE         K D++S G ++ EL     P
Sbjct: 163 DSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPP 209

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 81.6 bits (201), Expect = 6e-17
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 50/294 (17%)

Query: 528 MTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +T++  +G G  G V++  L         VA+K L    T+    D           +E 
Sbjct: 7   ITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQD---------FLSEA 57

Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAF- 640
             +G   H NI++L    +     +++ EYM NG L   L  H G    ++ +   +   
Sbjct: 58  SIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDG----EFSSYQLVGML 113

Query: 641 -GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
            G+A G+ YL        +HRD+ + NIL++ N + KV+DFG+++VL+       TT+  
Sbjct: 114 RGIAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGG 170

Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVD 758
                + APE     K T+  DV+SFG+V+ E+++ G +P            YW    + 
Sbjct: 171 KIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERP------------YW---DMS 215

Query: 759 TKEGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
             E +M    K ++  FR     D    V ++ ++C  +  A RP   ++V LL
Sbjct: 216 NHE-VM----KAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLL 264

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 81.4 bits (201), Expect = 6e-17
 Identities = 62/213 (29%), Positives = 87/213 (40%), Gaps = 28/213 (13%)

Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           + +G  G+VY     ++G+  A+K L         SD         +K E   +      
Sbjct: 4   ISKGAFGSVYLAKKRSTGDYFAIKVL-------KKSDMIAKNQVTNVKAERAIMMIQGES 56

Query: 593 -NIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLA 647
             + KLY  F S   LY   LV EY+  G+    +   G +  DW  +  IA  V  G+ 
Sbjct: 57  PYVAKLYYSFQSKDYLY---LVMEYLNGGDCASLIKTLGGLPEDW-AKQYIA-EVVLGVE 111

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            LH      IIHRDIK  N+L+D     K+ DFG+++       K        GT  YLA
Sbjct: 112 DLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN--KK-----FVGTPDYLA 161

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           PE           D +S G V+ E + G  P  
Sbjct: 162 PETILGVGDDKMSDWWSLGCVIFEFLFGYPPFH 194

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 81.6 bits (202), Expect = 7e-17
 Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G  G V+K  +  +G++VA+KK             D   + K    E+  L  ++H
Sbjct: 8   KIGEGSYGVVFKCRNRETGQIVAIKKF--------VESEDDPVIKKIALREIRMLKQLKH 59

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
            N+V L   F       LV+EY  +  + + L K    +      KI +   Q + + H 
Sbjct: 60  PNLVNLIEVFRRKRKLHLVFEYCDH-TVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHK 118

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                 IHRD+K  NIL+    Q K+ DFG A++L   G  D  T  +A T  Y APE  
Sbjct: 119 ---HNCIHRDVKPENILITKQGQIKLCDFGFARILT--GPGDDYTDYVA-TRWYRAPELL 172

Query: 712 Y-SSKATTKCDVYSFGVVLMELITG 735
              ++     DV++ G V  EL+TG
Sbjct: 173 VGDTQYGPPVDVWAIGCVFAELLTG 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 74/227 (32%), Positives = 104/227 (45%), Gaps = 34/227 (14%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D  ++   + E   +G G  G VY   D+ + EVVA+KK+ S   K S    ++ Q    
Sbjct: 12  DPEKLFTDLRE---IGHGSFGAVYFARDVRTNEVVAIKKM-SYSGKQS---NEKWQ---D 61

Query: 579 LKTEVETLGNIRHKNIVKLY-CYFSSLYCNLLVYEYM--PNGNLWDALHKGLVHLDWPTR 635
           +  EV  L  +RH N ++   CY        LV EY      ++ +   K L  ++    
Sbjct: 62  IIKEVRFLQQLRHPNTIEYKGCYLREHTA-WLVMEYCLGSASDILEVHKKPLQEVEIAA- 119

Query: 636 HKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
             I  G  QGLAYLH H      IHRDIK+ NILL      K+ADFG A ++       S
Sbjct: 120 --ICHGALQGLAYLHSHER----IHRDIKAGNILLTEPGTVKLADFGSASLV-------S 166

Query: 695 TTTVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKP 738
                 GT  ++APE   +    +   K DV+S G+  +EL   RKP
Sbjct: 167 PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKP 212

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 80.6 bits (199), Expect = 2e-16
 Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+  L  + H
Sbjct: 7   KIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREISLLKELNH 58

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNL---WDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
            NIVKL     +     LV+E++ + +L    DA     + L  P      F + QGLA+
Sbjct: 59  PNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASPLSGIPL--PLIKSYLFQLLQGLAF 115

Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
            H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    T  Y AP
Sbjct: 116 CHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAP 169

Query: 709 EYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           E     K  +T  D++S G +  E++T R
Sbjct: 170 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 198

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 80.1 bits (197), Expect = 2e-16
 Identities = 77/281 (27%), Positives = 120/281 (42%), Gaps = 33/281 (11%)

Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E  T+  ++G+G  G VYK ID  + EVVA+K +  +  +    D  Q         E+ 
Sbjct: 4   ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQ---------EIT 54

Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            L       I + Y  +       ++ EY+  G+  D L  G   L+      I   + +
Sbjct: 55  VLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPG--PLEETYIATILREILK 112

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH       IHRDIK+ N+LL      K+ADFG+A  L     K +T     GT  
Sbjct: 113 GLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNT---FVGTPF 166

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE    S    K D++S G+  +EL  G  P  D        ++ + +     +   
Sbjct: 167 WMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSD--------LHPMRVLFLIPKNSP 218

Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             L+ + S  F++           C +K P  RPT  E+++
Sbjct: 219 PTLEGQYSKPFKE-------FVEACLNKDPRFRPTAKELLK 252

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 76/290 (26%), Positives = 115/290 (39%), Gaps = 50/290 (17%)

Query: 532 NKVGQGGSGTV----YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
            ++G G  G+V    Y +       VAVK L                  K    E   + 
Sbjct: 1   KELGHGNFGSVVKGVYLMKSGKEVEVAVKTL---------KQEHIAAGKKEFLREASVMA 51

Query: 588 NIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI---AFGV 642
            + H  IV+L   C    L   +LV E  P G     L K L          +   A  V
Sbjct: 52  QLDHPCIVRLIGVCKGEPL---MLVMELAPLG----PLLKYLKKRREIPVSDLKELAHQV 104

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           A G+AYL        +HRD+ + N+LL   +Q K++DFG+++ L A  G D      AG 
Sbjct: 105 AMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGA--GSDYYRATTAGR 159

Query: 703 Y--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT 759
           +   + APE     K ++K DV+S+GV L E  + G KP    +G+ K            
Sbjct: 160 WPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKP----YGEMKG----------- 204

Query: 760 KEGIMEVLDKKLSGSFRDEM-IQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
              ++ +L+        +E   ++  I + C    P  RPT +E+     
Sbjct: 205 -AEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFR 253

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 68/246 (27%), Positives = 107/246 (43%), Gaps = 23/246 (9%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   +L  + E+ AVK L  +   +   D +    +K     V  L   +H 
Sbjct: 3   LGKGSFGKVLLAELKGTDELYAVKVL-KKDVILQDDDVECTMTEK----RVLALAG-KHP 56

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH-H 651
            + +L+  F +      V EY+  G+L   + +     D P     A  +  GL +LH  
Sbjct: 57  FLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQR-SGRFDEPRARFYAAEIVLGLQFLHER 115

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
           G    II+RD+K  N+LLD     K+ADFG+ K  +   G  +T+T   GT  Y+APE  
Sbjct: 116 G----IIYRDLKLDNVLLDSEGHIKIADFGMCK--EGILGGVTTST-FCGTPDYIAPEIL 168

Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD-------NKNIIYWVSIKVDTKEGIM 764
                    D ++ GV+L E++ G+ P E D  D          + Y   +  + K  + 
Sbjct: 169 SYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYPRWLSKEAKSILK 228

Query: 765 EVLDKK 770
             L K 
Sbjct: 229 SFLTKN 234

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 80.1 bits (197), Expect = 3e-16
 Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 24/221 (10%)

Query: 520 DQREILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D R +LE      K+G+G +G V    + +SG  VAVK +          D  + Q  + 
Sbjct: 18  DPRSLLENYI---KIGEGSTGIVCIAREKHSGRQVAVKMM----------DLRKQQRREL 64

Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           L  EV  + + +H+N+V++Y  +       ++ E++  G L D + +    L+      +
Sbjct: 65  LFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ--TRLNEEQIATV 122

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTT 697
              V Q L YLH      +IHRDIKS +ILL ++ + K++DFG      A+  KD     
Sbjct: 123 CESVLQALCYLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGFC----AQISKDVPKRK 175

Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            + GT  ++APE    +   T+ D++S G++++E++ G  P
Sbjct: 176 SLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPP 216

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 84/307 (27%), Positives = 133/307 (43%), Gaps = 71/307 (23%)

Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V K +       N    VAVK L     K  A++ D   L     +E+E + 
Sbjct: 20  LGEGAFGQVVKAEAVGLDNPNETSTVAVKML-----KDDATEKDLSDL----VSEMEMMK 70

Query: 588 NI-RHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALH-------KGLVHLDWPTRH 636
            I +HKNI+ L    +    LY   +V EY  +GNL D L                P   
Sbjct: 71  MIGKHKNIINLLGVCTQEGPLY---VVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEE 127

Query: 637 KI--------AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
            +        A+ VA+G+ +L        IHRD+ + N+L+  ++  K+ADFG+A+ +  
Sbjct: 128 TLTQKDLVSFAYQVARGMEFLAS---KKCIHRDLAARNVLVTEDHVMKIADFGLARDIHH 184

Query: 689 RGGKDSTTTVIAG--TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGD 745
                 TT    G     ++APE  +    T + DV+SFGV+L E+ T G  P       
Sbjct: 185 IDYYRKTTN---GRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSP------- 234

Query: 746 NKNIIYWVSIKVDT-----KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                 +  I V+      KEG    ++K  + +   E+  ++R    C  + P+ RPT 
Sbjct: 235 ------YPGIPVEELFKLLKEG--YRMEKPQNCT--QELYHLMR---DCWHEVPSQRPTF 281

Query: 801 NEVVQLL 807
            ++V+ L
Sbjct: 282 KQLVEDL 288

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 71/223 (31%), Positives = 104/223 (46%), Gaps = 33/223 (14%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            ++G+G  G VYK  D ++GE+VA+KK+     K     T           E++ L  + 
Sbjct: 13  GQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPIT--------AIREIKILRQLN 64

Query: 591 HKNIVKLYCYFS-------------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
           H+NIV L    +             + Y   LV+EYM + +L   L  GLVH        
Sbjct: 65  HRNIVNLKEIVTDKQDALDFKKDKGAFY---LVFEYM-DHDLMGLLESGLVHFSEDHIKS 120

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
               + +GL Y H       +HRDIK +NILL+   Q K+ADFG+A++  +   +  T  
Sbjct: 121 FMKQLLEGLNYCHK---KNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNK 177

Query: 698 VIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPV 739
           VI  T  Y  PE      +     DV+S G +L EL T +KP+
Sbjct: 178 VI--TLWYRPPELLLGEERYGPAIDVWSCGCILGELFT-KKPI 217

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 34/230 (14%)

Query: 533 KVGQGGSGTVY---KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +VGQGG G V+   K D  +GE+VA+K++  +      ++   +       TE + L   
Sbjct: 8   QVGQGGYGQVFLAKKKD--TGEIVALKRM-KKSLLFKLNEVRHV------LTERDILTTT 58

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQG 645
           + + +VKL   F     LY   L  EY+P G+    L + G++  D   R  +A      
Sbjct: 59  KSEWLVKLLYAFQDDEYLY---LAMEYVPGGDFRTLLNNLGVLSEDH-ARFYMAEMFE-A 113

Query: 646 LAYLHH-GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           +  LH  G     IHRD+K  N L+D +   K+ DFG++K      G  +    + G+  
Sbjct: 114 VDALHELG----YIHRDLKPENFLIDASGHIKLTDFGLSK------GIVTYANSVVGSPD 163

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN--KNIIYW 752
           Y+APE           D +S G +L E + G  P      +   +N+ YW
Sbjct: 164 YMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYW 213

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 80.4 bits (199), Expect = 4e-16
 Identities = 74/251 (29%), Positives = 107/251 (42%), Gaps = 53/251 (21%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V+ + D ++G+V A+K L     K      +Q+   +    E + L +    
Sbjct: 9   IGRGAFGEVWLVRDKDTGQVYAMKVL----RKSDMIKRNQIAHVR---AERDILADADSP 61

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAY 648
            IVKLY  F     LY   LV EYMP G+L + L  K +   +   R    F +A+ +  
Sbjct: 62  WIVKLYYSFQDEEHLY---LVMEYMPGGDLMNLLIRKDVFPEET-AR----FYIAELVLA 113

Query: 649 LH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------------------- 686
           L   H L    IHRDIK  NIL+D +   K+ADFG+ K +                    
Sbjct: 114 LDSVHKL--GFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRD 171

Query: 687 --QARGGKDSTTTVIA----GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
               R        V A    GT  Y+APE    +    +CD +S GV+L E++ G  P  
Sbjct: 172 NVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPF- 230

Query: 741 DDFGDNKNIIY 751
             + D     Y
Sbjct: 231 --YSDTLQETY 239

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 67/221 (30%), Positives = 100/221 (45%), Gaps = 27/221 (12%)

Query: 528 MTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           + +  ++G+G  GTV K +   SG ++AVK++   R+ V   +  +L +D      ++ +
Sbjct: 6   LKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRI---RSTVDEKEQKRLLMD------LDVV 56

Query: 587 GNIRH-KNIVKLY-CYFSSLYCNLLVYEYMPNG--NLWDALH-KGLVHLDWPTRHKIAFG 641
                   IVK Y   F    C  +  E M       +  ++      +      KIA  
Sbjct: 57  MRSSDCPYIVKFYGALFREGDC-WICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVA 115

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT-TVIA 700
             + L YL   L   IIHRD+K +NILLD N   K+ DFGI+  L      DS   T  A
Sbjct: 116 TVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFGISGQLV-----DSIAKTRDA 168

Query: 701 GTYGYLAPEYAYSSKAT---TKCDVYSFGVVLMELITGRKP 738
           G   Y+APE    S       + DV+S G+ L E+ TG+ P
Sbjct: 169 GCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFP 209

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 21/219 (9%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG G  G V+ + D  S    A+K +       +  +  +L+ ++ +  E   L  + H 
Sbjct: 9   VGTGTFGRVHLVRDRISEHYYALKVM-------AIPEVIRLKQEQHVHNEKRVLKEVSHP 61

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            I++L+          ++ EY+P G L+  L +        T    A  +   L YLH  
Sbjct: 62  FIIRLFWTEHDQRFLYMLMEYVPGGELFSYL-RNSGRFSNSTGLFYASEIVCALEYLHS- 119

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               I++RD+K  NILLD     K+ DFG AK L+ R      T  + GT  YLAPE   
Sbjct: 120 --KEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR------TWTLCGTPEYLAPEVIQ 171

Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
           S       D ++ G+++ E++ G  P    F DN   IY
Sbjct: 172 SKGHNKAVDWWALGILIYEMLVGYPPF---FDDNPFGIY 207

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 78.5 bits (193), Expect = 6e-16
 Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 28/220 (12%)

Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++    K+G G  G V+    N+   VAVK L      V A              E   
Sbjct: 6   ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA-----------FLEEANL 54

Query: 586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGV 642
           +  ++H  +V+LY   +      ++ EYM  G+L D L     G V L  P     +  +
Sbjct: 55  MKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLL--PKLIDFSAQI 112

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           A+G+AY+        IHRD+++ N+L+  +   K+ADFG+A+V++     D+  T   G 
Sbjct: 113 AEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIE-----DNEYTAREGA 164

Query: 703 ---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
                + APE       T K DV+SFG++L E++T G+ P
Sbjct: 165 KFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIP 204

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 78.5 bits (193), Expect = 6e-16
 Identities = 72/220 (32%), Positives = 105/220 (47%), Gaps = 35/220 (15%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +VG G  G VYK  +L++GE+ AVK +     K+   D   L     ++ E+  +   +H
Sbjct: 16  RVGSGTYGDVYKARNLHTGELAAVKII-----KLEPGDDFSL-----IQQEIFMVKECKH 65

Query: 592 KNIVKLYCYFSSLYCN---LLVYEYMPNGNLWDALHKGLVHLDWP-TRHKIAF---GVAQ 644
            NIV    YF S        +  EY   G+L D     + H+  P +  +IA+      Q
Sbjct: 66  CNIV---AYFGSYLSREKLWICMEYCGGGSLQD-----IYHVTGPLSELQIAYVCRETLQ 117

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GLAYLH       +HRDIK  NILL  N   K+ADFG+A  + A   K  +     GT  
Sbjct: 118 GLAYLHS---KGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKS---FIGTPY 171

Query: 705 YLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVED 741
           ++APE A   K       CD+++ G+  +EL   + P+ D
Sbjct: 172 WMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFD 211

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 78.0 bits (192), Expect = 7e-16
 Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 22/212 (10%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL--KTEVETLGNIR 590
           VG+G  G V+        ++V +K++            +Q+  D+ L  + E + L  + 
Sbjct: 8   VGRGAFGIVHLCRRKADQKLVIIKQI----------PVEQMTKDERLAAQNECQVLKLLS 57

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAYL 649
           H NI++ Y  F      ++V EY P G L + + K     LD  T   I     Q L  L
Sbjct: 58  HPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDT---ILHFFVQILLAL 114

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           HH     I+HRD+K+ NILLD +    K+ DFGI+K+L     K    TV+ GT  Y++P
Sbjct: 115 HHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKIL---SSKSKAYTVV-GTPCYISP 170

Query: 709 EYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           E         K D+++ G VL EL + ++  E
Sbjct: 171 ELCEGKPYNQKSDIWALGCVLYELASLKRAFE 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 78.0 bits (192), Expect = 7e-16
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 29/213 (13%)

Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           K+G G  G V+    N    VA+K L        A              E   +  ++H 
Sbjct: 13  KLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEA-----------FLAEANLMKQLQHP 61

Query: 593 NIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVAQGLAYL 649
            +V+LY   +   +Y   ++ EYM NG+L D L       L       +A  +A+G+A++
Sbjct: 62  RLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFI 118

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGYL 706
                   IHRD+++ NIL+      K+ADFG+A+++     +D+  T   G      + 
Sbjct: 119 ER---KNYIHRDLRAANILVSETLCCKIADFGLARLI-----EDNEYTAREGAKFPIKWT 170

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           APE       T K DV+SFG++L E++T GR P
Sbjct: 171 APEAINYGTFTIKSDVWSFGILLTEIVTYGRIP 203

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 77.7 bits (191), Expect = 8e-16
 Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 12/202 (5%)

Query: 545 IDLNSGEVVAV-KKLWSQRTKVSASDTDQLQL-DKGLKTEVETLGNIRHKNIVKLY--CY 600
            ++ SG+   V    W ++ KV+     +  + ++    E + +  + H  +V+LY  C 
Sbjct: 10  QEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCT 69

Query: 601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHR 660
             S  C  LV+E+M +G L D L          T   +   V +G+AYL     S +IHR
Sbjct: 70  ERSPIC--LVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLES---SNVIHR 124

Query: 661 DIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKC 720
           D+ + N L+  N   KV+DFG+ + +       ST T     +   +PE    SK ++K 
Sbjct: 125 DLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWS--SPEVFSFSKYSSKS 182

Query: 721 DVYSFGVVLMELIT-GRKPVED 741
           DV+SFGV++ E+ + G+ P E+
Sbjct: 183 DVWSFGVLMWEVFSEGKTPYEN 204

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 16/207 (7%)

Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V+  +L  + +  A+K L  ++  V   D  +  +   ++  V +L    H 
Sbjct: 3   LGKGSFGKVFLAELKGTNQFFAIKAL--KKDVVLMDDDVECTM---VEKRVLSLA-WEHP 56

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVAQGLAYLHH 651
            +  LYC F +      V EY+  G+L    H    H  D P     A  +  GL +LH 
Sbjct: 57  FLTHLYCTFQTKENLFFVMEYLNGGDL--MFHIQSCHKFDLPRATFYAAEIICGLQFLHS 114

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I++RD+K  NILLD +   K+ADFG+ K  +   G D+ T    GT  Y+APE  
Sbjct: 115 ---KGIVYRDLKLDNILLDTDGHIKIADFGMCK--ENMLG-DAKTCTFCGTPDYIAPEIL 168

Query: 712 YSSKATTKCDVYSFGVVLMELITGRKP 738
              K  T  D +SFGV+L E++ G+ P
Sbjct: 169 LGQKYNTSVDWWSFGVLLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 77.9 bits (192), Expect = 1e-15
 Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 21/211 (9%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G  GTV+K  +  + E+VA+K+       V   D D+      L+ E+  L  ++H
Sbjct: 7   KIGEGTYGTVFKAKNRETHEIVALKR-------VRLDDDDEGVPSSALR-EICLLKELKH 58

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           KNIV+LY    S     LV+EY        +D+ +     +D        F + +GLA+ 
Sbjct: 59  KNIVRLYDVLHSDKKLTLVFEYCDQDLKKYFDSCNG---DIDPEIVKSFMFQLLKGLAFC 115

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H      ++HRD+K  N+L++ N + K+ADFG+A+         S   V   T  Y  P+
Sbjct: 116 HS---HNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVV---TLWYRPPD 169

Query: 710 YAYSSKA-TTKCDVYSFGVVLMELITGRKPV 739
             + +K  +T  D++S G +  EL    +P+
Sbjct: 170 VLFGAKLYSTSIDMWSAGCIFAELANAGRPL 200

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 77.8 bits (191), Expect = 1e-15
 Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 18/214 (8%)

Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E  T+  K+G+G  G V+K ID  + +VVA+K +  +  +    D  Q         E+ 
Sbjct: 4   ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ---------EIT 54

Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            L       + K Y  +       ++ EY+  G+  D L  G   LD      I   + +
Sbjct: 55  VLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILK 112

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH       IHRDIK+ N+LL  + + K+ADFG+A  L     K +      GT  
Sbjct: 113 GLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRN---TFVGTPF 166

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           ++APE    S   +K D++S G+  +EL  G  P
Sbjct: 167 WMAPEVIKQSAYDSKADIWSLGITAIELAKGEPP 200

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 26/163 (15%)

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           + N +KLY   ++L  ++L+ +Y+ +G+L+D L K    L      KI   + + L  LH
Sbjct: 68  NPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKKE-GKLSEAEVKKIIRQLVEALNDLH 126

Query: 651 -HGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
            H     IIH DIK  N+L D    +  + D+G+ K+    G    T +   GT  Y +P
Sbjct: 127 KHN----IIHNDIKLENVLYDRAKDRIYLCDYGLCKI---IG----TPSCYDGTLDYFSP 175

Query: 709 E------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD 745
           E      Y  S       D ++ GV+  EL+TG+ P ++D  +
Sbjct: 176 EKIKGHNYDVS------FDWWAVGVLTYELLTGKHPFKEDEDE 212

Length = 267

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 43/227 (18%)

Query: 530 EKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVE 584
           E  ++G+G  GTVYK  DLN+G  VA+KK+     +V  S+       +G+      E+ 
Sbjct: 3   ELAEIGEGAYGTVYKARDLNTGRFVALKKV-----RVPLSE-------EGIPLSTLREIA 50

Query: 585 TLGNIR---HKNIVKLY--CYFSSLYCNL---LVYEYMPNGNLWDALHKGLVH-----LD 631
            L  +    H NIV+L   C+       L   LV+E++      D L   L       L 
Sbjct: 51  LLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD----QD-LATYLSKCPKPGLP 105

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
             T   +   + +G+ +LH      I+HRD+K  NIL+  + Q K+ADFG+A++      
Sbjct: 106 PETIKDLMRQLLRGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIY----S 158

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            +   T +  T  Y APE    S   T  D++S G +  EL   R+P
Sbjct: 159 FEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFR-RRP 204

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 77.8 bits (191), Expect = 1e-15
 Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTVY  ID+ +G+ VA+K++          +  Q    + +  E+  + 
Sbjct: 22  TRFEKIGQGASGTVYTAIDIATGQEVAIKQM----------NLQQQPKKELIINEILVMR 71

Query: 588 NIRHKNIVKLYCYFSSLYCN---LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             ++ NIV    Y  S        +V EY+  G+L D + +    +D      +     Q
Sbjct: 72  ENKNPNIVN---YLDSYLVGDELWVVMEYLAGGSLTDVVTETC--MDEGQIAAVCRECLQ 126

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L +LH    + +IHRDIKS NILL ++   K+ DFG    +     K ST   + GT  
Sbjct: 127 ALDFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST---MVGTPY 180

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           ++APE         K D++S G++ +E++ G  P
Sbjct: 181 WMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 34/176 (19%)

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           Q L  +HH     +IHRDIKS NILL  N   K+ DFG +K+  A    D   T   GT 
Sbjct: 151 QVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRT-FCGTP 209

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI 763
            Y+APE       + K D++S GV+L EL+T ++P +                    E +
Sbjct: 210 YYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDG-------------------ENM 250

Query: 764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCK 819
            EV+ K L+G + D +              P+  P M E+V  L  +DP R  S  
Sbjct: 251 EEVMHKTLAGRY-DPL-------------PPSISPEMQEIVTALLSSDPKRRPSSS 292

Length = 496

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 63/224 (28%), Positives = 92/224 (41%), Gaps = 34/224 (15%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G  G VYK   + +G VVA+KK+     K     T           E++ L  ++H
Sbjct: 15  KLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITAL--------REIKILKKLKH 66

Query: 592 KNIVKLYCYF--------SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
            N+V L                   +V  YM + +L   L    V L           + 
Sbjct: 67  PNVVPLIDMAVERPDKSKRKRGSVYMVTPYM-DHDLSGLLENPSVKLTESQIKCYMLQLL 125

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ----------ARGGKD 693
           +G+ YLH      I+HRDIK+ NIL+D     K+ADFG+A+               G + 
Sbjct: 126 EGINYLHENH---ILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRK 182

Query: 694 STTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
            T  V+  T  Y  PE     +  TT  D++  G V  E+ T R
Sbjct: 183 YTNLVV--TRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRR 224

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 77.5 bits (191), Expect = 2e-15
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 56/296 (18%)

Query: 528 MTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           +    ++G+G  G V K+  + +G ++AVK++     + + +  +Q +L   L       
Sbjct: 3   LEVIEELGRGAYGVVDKMRHVPTGTIMAVKRI-----RATVNSQEQKRLLMDLDI----- 52

Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVY---EYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
            ++R  +      ++ +L+    V+   E M       +  ++   + +      KIA  
Sbjct: 53  -SMRSVDCPYTVTFYGALFREGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVS 111

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS-TTTVIA 700
           + + L YLH  L   +IHRD+K +N+L++ N Q K+ DFGI+  L      DS   T+ A
Sbjct: 112 IVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFGISGYLV-----DSVAKTIDA 164

Query: 701 GTYGYLAPE--------YAYSSKATTKCDVYSFGVVLMELITGRKPVE---DDFGDNKNI 749
           G   Y+APE          Y  K+    DV+S G+ ++EL TGR P +     F   K +
Sbjct: 165 GCKPYMAPERINPELNQKGYDVKS----DVWSLGITMIELATGRFPYDSWKTPFQQLKQV 220

Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           +         +E   ++  +K S  F+D          +C  K+   RP   E++Q
Sbjct: 221 V---------EEPSPQLPAEKFSPEFQD-------FVNKCLKKNYKERPNYPELLQ 260

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E + +  + H+ +V+LY   +      +V EYM NG L + L +           ++   
Sbjct: 49  EAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKD 108

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK-VLQARGGKDSTTTVIA 700
           V +G+AYL        IHRD+ + N L+D     KV+DFG+++ VL      D  T+ + 
Sbjct: 109 VCEGMAYLES---KQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLD-----DEYTSSVG 160

Query: 701 GTY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
             +   +  PE    SK ++K DV++FGV++ E+ + G+ P E
Sbjct: 161 SKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYE 203

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 77.5 bits (191), Expect = 2e-15
 Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 36/219 (16%)

Query: 612 EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV 671
           E+M  G+L D + K    +      KI+  V +GL YL       I+HRD+K +NIL++ 
Sbjct: 79  EHMDGGSL-DQVLKKAGRIPENILGKISIAVLRGLTYLREKH--KIMHRDVKPSNILVNS 135

Query: 672 NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLME 731
             + K+ DFG++  L      DS      GT  Y++PE    +  T + D++S G+ L+E
Sbjct: 136 RGEIKLCDFGVSGQLI-----DSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVE 190

Query: 732 LITGRKPV--------------EDDFGDNKNIIYWVSIKVDTKE---GIMEVLD------ 768
           +  GR P+                  G+ K     VS           I E+LD      
Sbjct: 191 MAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEP 250

Query: 769 --KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             K  SG+F DE    +     C  K+P  R  + E+ +
Sbjct: 251 PPKLPSGAFSDEFQDFVDK---CLKKNPKERADLKELTK 286

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 77.4 bits (190), Expect = 2e-15
 Identities = 79/244 (32%), Positives = 112/244 (45%), Gaps = 52/244 (21%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D  EI+E       +G+G  G VYK+ +   G + AVK L         SD D+      
Sbjct: 22  DTWEIIET------IGKGTYGKVYKVTNKKDGSLAAVKIL------DPISDVDE------ 63

Query: 579 LKTEVETLGNI-----RHKNIVKLY-CYFSSLYCN----LLVYEYMPNGNLWDALHKGLV 628
              E+E   NI      H N+VK Y  ++ +         LV E + NG     L KGL+
Sbjct: 64  ---EIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLE-LCNGGSVTELVKGLL 119

Query: 629 ----HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK 684
                LD      I +G   GL +LH+   + IIHRD+K  NILL      K+ DFG++ 
Sbjct: 120 ICGQRLDEAMISYILYGALLGLQHLHN---NRIIHRDVKGNNILLTTEGGVKLVDFGVSA 176

Query: 685 VLQARGGKDSTTTVIAGTYGYLAPE-------YAYSSKATTKCDVYSFGVVLMELITGRK 737
            L +   + +T+    GT  ++APE       Y YS  A  +CDV+S G+  +EL  G  
Sbjct: 177 QLTSTRLRRNTSV---GTPFWMAPEVIACEQQYDYSYDA--RCDVWSLGITAIELGDGDP 231

Query: 738 PVED 741
           P+ D
Sbjct: 232 PLFD 235

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 87/320 (27%), Positives = 128/320 (40%), Gaps = 66/320 (20%)

Query: 501 TLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLW 559
           T+    +P D+     +               ++G G  G VYK+    +G V+AVK++ 
Sbjct: 4   TIDGQKYPADLNDLENLG--------------EIGSGTCGQVYKMRFKKTGHVMAVKQM- 48

Query: 560 SQRTKVSASDTDQLQ-LDKGLKTEVETLGNIRH--KNIVKLYCYFSSLYCNLLVYEYMPN 616
            +RT     +   L  LD  LK+         H    IVK Y YF +     +  E M  
Sbjct: 49  -RRTGNKEENKRILMDLDVVLKS---------HDCPYIVKCYGYFITDSDVFICMELM-- 96

Query: 617 GNLWDALHKGLVHLDWPTR--HKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVN 672
               D L K +     P     K+   + + L YL   HG    +IHRD+K +NILLD +
Sbjct: 97  STCLDKLLKRIQG-PIPEDILGKMTVAIVKALHYLKEKHG----VIHRDVKPSNILLDAS 151

Query: 673 YQPKVADFGIAKVL---QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK----CDVYSF 725
              K+ DFGI+  L   +A+       T  AG   Y+APE         K     DV+S 
Sbjct: 152 GNVKLCDFGISGRLVDSKAK-------TRSAGCAAYMAPERIDPPDPNPKYDIRADVWSL 204

Query: 726 GVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRI 785
           G+ L+EL TG+ P       N    + V  K+  +E      ++  S  F          
Sbjct: 205 GISLVELATGQFPY-----KNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCS-------F 252

Query: 786 AIRCTSKSPATRPTMNEVVQ 805
              C +K    RP   E++Q
Sbjct: 253 VDLCLTKDHRKRPKYRELLQ 272

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 68/213 (31%), Positives = 106/213 (49%), Gaps = 27/213 (12%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVETLG 587
           K+G+G  G VYK  D  +GE+VA+KK+   R +           D+G+ +    E+  L 
Sbjct: 6   KIGEGTYGVVYKARDKLTGEIVALKKI---RLE---------TEDEGVPSTAIREISLLK 53

Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGL 646
            + H NIV+L     S     LV+E++ + +L   +    L  LD P      + + QG+
Sbjct: 54  ELNHPNIVRLLDVVHSENKLYLVFEFL-DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGI 112

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           AY H      ++HRD+K  N+L+D     K+ADFG+A+   A G    T T    T  Y 
Sbjct: 113 AYCHS---HRVLHRDLKPQNLLIDREGALKLADFGLAR---AFGVPVRTYTHEVVTLWYR 166

Query: 707 APEYAYSSKA-TTKCDVYSFGVVLMELITGRKP 738
           APE    S+  +T  D++S G +  E++  R+P
Sbjct: 167 APEILLGSRQYSTPVDIWSIGCIFAEMVN-RRP 198

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 68/216 (31%), Positives = 100/216 (46%), Gaps = 27/216 (12%)

Query: 535 GQGGSGTV----YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           G+G  G V    YK    +GE+ A+K L     K      D+++     K   ET  + R
Sbjct: 8   GRGHFGKVLLAEYK---KTGELYAIKAL----KKGDIIARDEVESLMCEKRIFETANSER 60

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLA 647
           H  +V L+  F +      V EY   G+L   +H   +H D  +  +  F  A    GL 
Sbjct: 61  HPFLVNLFACFQTEDHVCFVMEYAAGGDL--MMH---IHTDVFSEPRAVFYAACVVLGLQ 115

Query: 648 YLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           YLH +     I++RD+K  N+LLD     K+ADFG+ K  +  G  D T+T   GT  +L
Sbjct: 116 YLHENK----IVYRDLKLDNLLLDTEGFVKIADFGLCK--EGMGFGDRTST-FCGTPEFL 168

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           APE    +  T   D +  GV++ E++ G  P   D
Sbjct: 169 APEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGD 204

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 37/222 (16%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            +G G  G V   ID  SG+ VA+KK+        A D     L K    E++ L + +H
Sbjct: 12  NIGSGAYGVVCSAIDTRSGKKVAIKKI------PHAFDV--PTLAKRTLRELKILRHFKH 63

Query: 592 KNIVKLY-------CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP-TRHKIAFGVA 643
            NI+ +          F  +Y   +V + M +      LH  ++H D P T   I + + 
Sbjct: 64  DNIIAIRDILRPPGADFKDVY---VVMDLMESD-----LHH-IIHSDQPLTEEHIRYFLY 114

Query: 644 Q---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST--TTV 698
           Q   GL Y+H    + +IHRD+K +N+L++ + + ++ DFG+A+ L +   +     T  
Sbjct: 115 QLLRGLKYIHS---ANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEY 171

Query: 699 IAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPV 739
           +A T  Y APE   S  + TT  D++S G +  E++ GR+ +
Sbjct: 172 VA-TRWYRAPELLLSLPEYTTAIDMWSVGCIFAEML-GRRQL 211

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 76.7 bits (188), Expect = 3e-15
 Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 19/211 (9%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTV+  ID+ +G+ VA+K++  Q+        +++ + K LK       
Sbjct: 22  TRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELK------- 74

Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
           N    N +  +     L+   +V EY+  G+L D + +    +D      +     Q L 
Sbjct: 75  NPNIVNFLDSFLVGDELF---VVMEYLAGGSLTDVVTETC--MDEAQIAAVCRECLQALE 129

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           +LH    + +IHRDIKS N+LL ++   K+ DFG    +     K ST   + GT  ++A
Sbjct: 130 FLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRST---MVGTPYWMA 183

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           PE         K D++S G++ +E++ G  P
Sbjct: 184 PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 82/315 (26%), Positives = 133/315 (42%), Gaps = 69/315 (21%)

Query: 522 REILEAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQLQL 575
           RE +  + E   +GQG  G VY+     +  GE    VA+K +       +AS  ++++ 
Sbjct: 5   REKITLIRE---LGQGSFGMVYEGLAKGVVKGEPETRVAIKTV-----NENASMRERIEF 56

Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK------GLVH 629
                 E   +      ++V+L    S+    L+V E M  G+L   L            
Sbjct: 57  LN----EASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPG 112

Query: 630 LDWPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
           L  PT  K    A  +A G+AYL        +HRD+ + N ++  +   K+ DFG+ + +
Sbjct: 113 LGPPTLQKFIQMAAEIADGMAYLAA---KKFVHRDLAARNCMVAEDLTVKIGDFGMTRDI 169

Query: 687 QAR-----GGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-G 735
                   GGK           G L     APE       TTK DV+SFGVVL E+ T  
Sbjct: 170 YETDYYRKGGK-----------GLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLA 218

Query: 736 RKPVEDDFG-DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSP 794
            +P +   G  N+ ++ +V        G ++     L  +  D++++++R    C   +P
Sbjct: 219 EQPYQ---GLSNEEVLKFVI-----DGGHLD-----LPENCPDKLLELMR---MCWQYNP 262

Query: 795 ATRPTMNEVVQLLAE 809
             RPT  E+V  L +
Sbjct: 263 KMRPTFLEIVSSLKD 277

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 75.9 bits (186), Expect = 6e-15
 Identities = 77/282 (27%), Positives = 129/282 (45%), Gaps = 40/282 (14%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTVY  +D+ +G+ VA++++          +  Q    + +  E+  + 
Sbjct: 23  TRFEKIGQGASGTVYTAMDVATGQEVAIRQM----------NLQQQPKKELIINEILVMR 72

Query: 588 NIRHKNIVKLYCYFSSLYCN---LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             ++ NIV    Y  S        +V EY+  G+L D + +    +D      +     Q
Sbjct: 73  ENKNPNIVN---YLDSYLVGDELWVVMEYLAGGSLTDVVTETC--MDEGQIAAVCRECLQ 127

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L +LH    + +IHRDIKS NILL ++   K+ DFG    +     K ST   + GT  
Sbjct: 128 ALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST---MVGTPY 181

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE         K D++S G++ +E+I G  P  ++  +    +Y ++       G  
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE--NPLRALYLIATN-----GTP 234

Query: 765 EVLD-KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           E+ + +KLS  FRD +        RC       R +  E++Q
Sbjct: 235 ELQNPEKLSAIFRDFL-------NRCLDMDVEKRGSAKELLQ 269

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 75.9 bits (186), Expect = 8e-15
 Identities = 80/257 (31%), Positives = 115/257 (44%), Gaps = 41/257 (15%)

Query: 490 SKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVY-KIDLN 548
           S  RA +  D  ++  FF  D +   ++  D REI          G G  G VY   D+ 
Sbjct: 2   STSRAGSLKDPEIAELFFKEDPE---KLFTDLREI----------GHGSFGAVYFARDVR 48

Query: 549 SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY-CYFSSLYCN 607
           + EVVA+KK+       S S     +  + +  EV+ L  I+H N ++   CY    +  
Sbjct: 49  TNEVVAIKKM-------SYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLRE-HTA 100

Query: 608 LLVYEYM--PNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKST 665
            LV EY      +L +   K L  ++      I  G  QGLAYLH   +   IHRDIK+ 
Sbjct: 101 WLVMEYCLGSASDLLEVHKKPLQEVEIAA---ITHGALQGLAYLHSHNM---IHRDIKAG 154

Query: 666 NILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS---SKATTKCDV 722
           NILL    Q K+ADFG A +        S      GT  ++APE   +    +   K DV
Sbjct: 155 NILLTEPGQVKLADFGSASIA-------SPANSFVGTPYWMAPEVILAMDEGQYDGKVDV 207

Query: 723 YSFGVVLMELITGRKPV 739
           +S G+  +EL   + P+
Sbjct: 208 WSLGITCIELAERKPPL 224

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 76.0 bits (187), Expect = 8e-15
 Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 29/214 (13%)

Query: 534 VGQGGSGTVY----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +GQG  G V+        ++G++ A+K L     KV     D+++     K E + L  +
Sbjct: 4   LGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVR----DRVRT----KMERDILAEV 55

Query: 590 RHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ-G 645
            H  IVKL+  F +   LY   L+ +++  G+L+  L K ++     T   + F +A+  
Sbjct: 56  NHPFIVKLHYAFQTEGKLY---LILDFLRGGDLFTRLSKEVMF----TEEDVKFYLAELA 108

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           LA  H H L   II+RD+K  NILLD     K+ DFG++K  ++    +       GT  
Sbjct: 109 LALDHLHSL--GIIYRDLKPENILLDEEGHIKLTDFGLSK--ESIDH-EKKAYSFCGTVE 163

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           Y+APE       T   D +SFGV++ E++TG  P
Sbjct: 164 YMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLP 197

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 74.9 bits (184), Expect = 9e-15
 Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 34/233 (14%)

Query: 580 KTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH--KGLVH-----LDW 632
           + EV  L N++H NIV+    F       +V +Y   G+L+  ++  +G++      LDW
Sbjct: 47  RKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDW 106

Query: 633 PTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
             +      +   L ++H      I+HRDIKS NI L  +   K+ DFGIA+VL +    
Sbjct: 107 FVQ------ICLALKHVHD---RKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNST--V 155

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +   T I GT  YL+PE   +     K D+++ G VL E+ T +   E   G+ KN++  
Sbjct: 156 ELARTCI-GTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEA--GNMKNLV-- 210

Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             +K+    G    +    S   R+ + Q+ +       ++P  RP++N +++
Sbjct: 211 --LKI--IRGSYPPVSSHYSYDLRNLVSQLFK-------RNPRDRPSVNSILE 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 29/213 (13%)

Query: 533 KVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G G  G VY   D+ + EVVA+KK+       S   +++   D  +  EV  L  +RH
Sbjct: 22  EIGHGSFGAVYFARDVRNSEVVAIKKM-----SYSGKQSNEKWQD--IIKEVRFLQKLRH 74

Query: 592 KNIVKLY-CYFSSLYCNLLVYEYM--PNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
            N ++   CY    +   LV EY      +L +   K L  ++      +  G  QGLAY
Sbjct: 75  PNTIQYRGCYLRE-HTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA---VTHGALQGLAY 130

Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           LH      +IHRD+K+ NILL      K+ DFG A ++       +      GT  ++AP
Sbjct: 131 LHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIM-------APANXFVGTPYWMAP 180

Query: 709 EYAYS---SKATTKCDVYSFGVVLMELITGRKP 738
           E   +    +   K DV+S G+  +EL   RKP
Sbjct: 181 EVILAMDEGQYDGKVDVWSLGITCIEL-AERKP 212

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 74/297 (24%), Positives = 116/297 (39%), Gaps = 53/297 (17%)

Query: 525 LEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASD-TDQLQLDKGLKTE 582
           L     + K+G+G    VYK I L  G VVA+KK       V   +  D       LK E
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKK-------VQIFEMMDAKARQDCLK-E 52

Query: 583 VETLGNIRHKNIVKLYCYFSSLYCNLL--VYEYMPNGNLWDAL---HKGLVHLDWPTRHK 637
           ++ L  + H N++K    F  +  N L  V E    G+L   +    K    +   T  K
Sbjct: 53  IDLLKQLDHPNVIKYLASF--IENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWK 110

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
               +   L ++H      I+HRDIK  N+ +      K+ D G+ +         S+ T
Sbjct: 111 YFVQLCSALEHMHS---KRIMHRDIKPANVFITATGVVKLGDLGLGRFF-------SSKT 160

Query: 698 VIA----GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
             A    GT  Y++PE  + +    K D++S G +L E+   + P   D           
Sbjct: 161 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD----------- 209

Query: 754 SIKVDTKEGIMEVLDKKLSGSFR----DEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
                 K  +  +  K     +     D   + LR  + RC +  P  RP ++ V+Q
Sbjct: 210 ------KMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQ 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 75.1 bits (184), Expect = 2e-14
 Identities = 77/225 (34%), Positives = 103/225 (45%), Gaps = 30/225 (13%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D  EI   + E   +G G  G VY   + ++ EVVAVKK+       S   T++   D  
Sbjct: 18  DPEEIFVGLHE---IGHGSFGAVYFATNSHTNEVVAVKKM-----SYSGKQTNEKWQD-- 67

Query: 579 LKTEVETLGNIRHKNIVKLY-CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
           +  EV+ L  ++H N ++   CY    +   LV EY   G+  D L      L       
Sbjct: 68  IIKEVKFLQQLKHPNTIEYKGCYLKE-HTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAA 125

Query: 638 IAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
           I  G  QGLAYLH H +    IHRDIK+ NILL    Q K+ADFG A          S  
Sbjct: 126 ITHGALQGLAYLHSHNM----IHRDIKAGNILLTEPGQVKLADFGSASKS-------SPA 174

Query: 697 TVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKP 738
               GT  ++APE   +    +   K DV+S G+  +EL   RKP
Sbjct: 175 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKP 218

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 26/211 (12%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVETLG 587
           K+G+G   TVYK  +  +GE+VA+K++              L  ++G  +    E+  + 
Sbjct: 7   KLGEGTYATVYKGRNRTTGEIVALKEI-------------HLDAEEGTPSTAIREISLMK 53

Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNG-NLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            ++H+NIV+L+    +    +LV+EYM      +   H     LD  T     + + +G+
Sbjct: 54  ELKHENIVRLHDVIHTENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGI 113

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           A+ H    + ++HRD+K  N+L++   + K+ADFG+A+         S   V   T  Y 
Sbjct: 114 AFCHE---NRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVV---TLWYR 167

Query: 707 APEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
           AP+    S+  +T  D++S G ++ E+ITGR
Sbjct: 168 APDVLLGSRTYSTSIDIWSVGCIMAEMITGR 198

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 23/176 (13%)

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIA---FGVAQ-- 644
            H  +  L+C F +      V EY+  G+L       + H+    R   A   F  A+  
Sbjct: 54  EHPFLTHLFCTFQTKEHLFFVMEYLNGGDL-------MFHIQSSGRFDEARARFYAAEII 106

Query: 645 -GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            GL +LH      II+RD+K  N+LLD +   K+ADFG+ K      GK ST     GT 
Sbjct: 107 CGLQFLHK---KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKAST---FCGTP 160

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT 759
            Y+APE     K     D +SFGV+L E++ G+ P     G++++ ++  SI  D 
Sbjct: 161 DYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFH---GEDEDELFD-SILNDR 212

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 24/214 (11%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G V    +  +G++ A KKL  +R K       + + ++    E + L  +  +
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACKKLDKKRLK-------KRKGEQMALNEKKILEKVSSR 53

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP--TRHKIAFGVAQ---GLA 647
            IV L   F +     LV   M  G+L       + ++  P     +  F  AQ   GL 
Sbjct: 54  FIVSLAYAFETKDDLCLVMTLMNGGDL----KYHIYNVGEPGFPEARAIFYAAQIICGLE 109

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           +LH      I++RD+K  N+LLD +   +++D G+A  L+            AGT GY+A
Sbjct: 110 HLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG----KKIKGRAGTPGYMA 162

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           PE           D ++ G  L E+I GR P   
Sbjct: 163 PEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQ 196

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 50/285 (17%)

Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQL--QLDKGLKTEVETLGNIR 590
           K+G+G  G +Y         +A  K  S+   +   D  ++  +  +  K EV  L  ++
Sbjct: 7   KIGEGSFGKIY---------LAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMK 57

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH--KGLVH-----LDWPTRHKIAFGVA 643
           H NIV  +  F       +V EY   G+L   ++  +G++      L W  +      ++
Sbjct: 58  HPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQ------IS 111

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ-PKVADFGIAKVLQARGGKDST--TTVIA 700
            GL ++H      I+HRDIKS NI L  N    K+ DFGIA+ L      DS        
Sbjct: 112 LGLKHIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLN-----DSMELAYTCV 163

Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK 760
           GT  YL+PE   +     K D++S G VL EL T + P E       N ++ + +K+   
Sbjct: 164 GTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEG------NNLHQLVLKI--C 215

Query: 761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           +G    +    S   R  + Q+ ++       SP  RP++  +++
Sbjct: 216 QGYFAPISPNFSRDLRSLISQLFKV-------SPRDRPSITSILK 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 74.3 bits (182), Expect = 2e-14
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 22/220 (10%)

Query: 520 DQREILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D RE L++     K+G+G +G V    + ++G+ VAVKK+          D  + Q  + 
Sbjct: 19  DPREYLDSFI---KIGEGSTGIVCIATEKHTGKQVAVKKM----------DLRKQQRREL 65

Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           L  EV  + +  H+N+V +Y  +       +V E++  G L D +      ++      +
Sbjct: 66  LFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATV 123

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
              V + L+YLH+     +IHRDIKS +ILL  + + K++DFG    +     K  +   
Sbjct: 124 CLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKS--- 177

Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           + GT  ++APE        T+ D++S G++++E+I G  P
Sbjct: 178 LVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPP 217

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 74.7 bits (183), Expect = 2e-14
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)

Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           ++G G  G V K+      ++  +KL     K +  +         +  E++ L      
Sbjct: 12  ELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQ--------IIRELQVLHECNSP 63

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            IV  Y  F S     +  E+M  G+L D + K    +      K++  V +GLAYL   
Sbjct: 64  YIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKEAKRIPEEILGKVSIAVLRGLAYLREK 122

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               I+HRD+K +NIL++   + K+ DFG++  L      DS      GT  Y++PE   
Sbjct: 123 --HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMSPERLQ 175

Query: 713 SSKATTKCDVYSFGVVLMELITGRKPV 739
            +  + + D++S G+ L+EL  GR P+
Sbjct: 176 GTHYSVQSDIWSMGLSLVELAIGRYPI 202

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 64/193 (33%), Positives = 86/193 (44%), Gaps = 34/193 (17%)

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           IV+L+  F     LY   +V EYMP G+L + +    +   W  R   A  V   L  +H
Sbjct: 105 IVQLHYAFQDDKYLY---MVMEYMPGGDLVNLMSNYDIPEKW-ARFYTA-EVVLALDAIH 159

Query: 651 H-GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
             G     IHRD+K  N+LLD +   K+ADFG    + A G     T V  GT  Y++PE
Sbjct: 160 SMGF----IHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAV--GTPDYISPE 213

Query: 710 YAYSSKATT----KCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
              S         +CD +S GV L E++ G  P   D           S+ V T   IM 
Sbjct: 214 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD-----------SL-VGTYSKIM- 260

Query: 766 VLDKKLSGSFRDE 778
             D K S +F D+
Sbjct: 261 --DHKNSLTFPDD 271

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 87/307 (28%), Positives = 136/307 (44%), Gaps = 66/307 (21%)

Query: 534 VGQGGSGTVYK---IDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +GQG  G V++     L   E   +VAVK L     K  AS    +Q D   + E   + 
Sbjct: 13  IGQGAFGRVFQARAPGLLPYEPFTMVAVKML-----KEEASA--DMQAD--FQREAALMA 63

Query: 588 NIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHK-------GLVHLDWPTRH-- 636
              H NIVKL   C      C  L++EYM  G+L + L          L H     R   
Sbjct: 64  EFDHPNIVKLLGVCAVGKPMC--LLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCG 121

Query: 637 ------------KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA- 683
                        IA  VA G+AYL        +HRD+ + N L+  N   K+ADFG++ 
Sbjct: 122 LNPLPLSCTEQLCIAKQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSR 178

Query: 684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
            +  A   K S    I     ++ PE  + ++ TT+ DV+++GVVL E+ + G +P    
Sbjct: 179 NIYSADYYKASENDAIP--IRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPY--- 233

Query: 743 FG-DNKNIIYWVSIKVDTKEG-IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
           +G  ++ +IY+V      ++G ++   D         E+  ++R    C SK P+ RP+ 
Sbjct: 234 YGMAHEEVIYYV------RDGNVLSCPDNCPL-----ELYNLMR---LCWSKLPSDRPSF 279

Query: 801 NEVVQLL 807
             + ++L
Sbjct: 280 ASINRIL 286

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 38/223 (17%)

Query: 530 EKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
           E+  +G+G  G VY   DL++   +A+K++  + ++      +++ L   LK        
Sbjct: 12  ERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLK-------- 63

Query: 589 IRHKNIVKLYCYFSSLYCN---LLVYEYMPNGNLWDALHK--GLVHLDWPTRHKIAFGVA 643
             H+NIV+   Y  S   N    +  E +P G+L   L    G +  +  T       + 
Sbjct: 64  --HRNIVQ---YLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQIL 118

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAG 701
           +GL YLH    + I+HRDIK  N+L++  Y    K++DFG +K L    G +  T    G
Sbjct: 119 EGLKYLHD---NQIVHRDIKGDNVLVN-TYSGVVKISDFGTSKRL---AGINPCTETFTG 171

Query: 702 TYGYLAPEY------AYSSKATTKCDVYSFGVVLMELITGRKP 738
           T  Y+APE        Y + A    D++S G  ++E+ TG+ P
Sbjct: 172 TLQYMAPEVIDKGPRGYGAPA----DIWSLGCTIVEMATGKPP 210

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 3e-14
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 10/161 (6%)

Query: 338 IDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYI 397
           + L +  L G IP+ I  L+ L  + L  N +  +IP SL S+ SL VLDLS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 398 PESLCELLPNSI-NFSNNRLSGPIPLSL---IKEGLVESFSGNPGLCVSVSVNSSDKNFP 453
           PESL +L    I N + N LSG +P +L   +      +F+ N GLC    +        
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR------A 536

Query: 454 LCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRA 494
             PH     ++   + V  + + + I  + + KRR +  RA
Sbjct: 537 CGPHLSVGAKIGIAFGVSVAFLFLVICAMCWWKRRQNILRA 577

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 4e-14
 Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 319 NQ-ISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSL 377
           NQ + GFIP++I +   L  I+LS N + G IP  +G++  L +L L  N  N SIP SL
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 378 SSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNN 414
             L SL +L+L+ N L+G +P +L   L +  S NF++N
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 73.0 bits (179), Expect = 4e-14
 Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 19/227 (8%)

Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI+ L    +     ++V EYM NG+L   L K            +  G
Sbjct: 55  EASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRG 114

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 115 IASGMKYLSD---MGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 171

Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + APE     K T+  DV+S+G+V+ E+++ G +P            YW     D  
Sbjct: 172 PIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERP------------YWEMSNQDVI 219

Query: 761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + I E    +L     D    + ++ + C  K    RP   ++V +L
Sbjct: 220 KAIEE--GYRLPAPM-DCPAALHQLMLDCWQKDRNERPKFEQIVSIL 263

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 72.7 bits (178), Expect = 5e-14
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 582 EVETLGNIRHKNIVKLYCYF----SSLYCNLLVYEYMPNGNLWDALH-KGLVHLDWPTRH 636
           E   +  +RH N+V+L          LY   +V EYM  G+L D L  +G   L      
Sbjct: 49  EASVMTQLRHSNLVQLLGVIVEEKGGLY---IVTEYMAKGSLVDYLRSRGRSVLGGDCLL 105

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
           K +  V + + YL     +  +HRD+ + N+L+  +   KV+DFG+ K  +A   +D+  
Sbjct: 106 KFSLDVCEAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK--EASSTQDTGK 160

Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
             +  T    APE     K +TK DV+SFG++L E+ + GR P
Sbjct: 161 LPVKWT----APEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 73.3 bits (180), Expect = 5e-14
 Identities = 80/316 (25%), Positives = 133/316 (42%), Gaps = 74/316 (23%)

Query: 522 REILEAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQL 575
              L A+    ++G+G  G VYK +L       S   VA+K L          +  + ++
Sbjct: 1   EIPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTL---------KENAEPKV 51

Query: 576 DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVH---- 629
            +  + E E + +++H NIV L   C      C L  +EY+ +G+L    H+ LV     
Sbjct: 52  QQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCML--FEYLAHGDL----HEFLVRNSPH 105

Query: 630 ---------------LDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVN 672
                          LD      IA  +A G+ YL  HH      +HRD+ + N L+   
Sbjct: 106 SDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH-----FVHRDLAARNCLVGEG 160

Query: 673 YQPKVADFGIAKVLQA----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVV 728
              K++DFG+++ + +    R    S   V      ++ PE     K TT+ D++SFGVV
Sbjct: 161 LTVKISDFGLSRDIYSADYYRVQSKSLLPV-----RWMPPEAILYGKFTTESDIWSFGVV 215

Query: 729 LMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI 787
           L E+ + G +P    +G +              E I  +  ++L     D   +V  + I
Sbjct: 216 LWEIFSYGLQPY---YGFSNQ------------EVIEMIRSRQLLPCPEDCPARVYALMI 260

Query: 788 RCTSKSPATRPTMNEV 803
            C ++ PA RP   ++
Sbjct: 261 ECWNEIPARRPRFKDI 276

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 72.9 bits (179), Expect = 6e-14
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 47/232 (20%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           DQ E +E      K+G+G  G VYK  D  + E +A+KK+  +            Q D+G
Sbjct: 2   DQYEKVE------KIGEGTYGVVYKARDRVTNETIALKKIRLE------------QEDEG 43

Query: 579 LKT----EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD--- 631
           + +    E+  L  ++H NIV+L     S     LV+EY+   +L   L K   H+D   
Sbjct: 44  VPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYL---DL--DLKK---HMDSSP 95

Query: 632 -WPTRHKIA----FGVAQGLAYLHHGLLSPIIHRDIKSTNILLD-VNYQPKVADFGIAKV 685
            +    ++     + + +G+AY H      ++HRD+K  N+L+D      K+ADFG+A+ 
Sbjct: 96  DFAKNPRLIKTYLYQILRGIAYCHS---HRVLHRDLKPQNLLIDRRTNALKLADFGLAR- 151

Query: 686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
             A G    T T    T  Y APE    S+  +T  D++S G +  E++  +
Sbjct: 152 --AFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQK 201

Length = 294

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 72.6 bits (178), Expect = 7e-14
 Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G V    +  +G++ A KKL  +R K       + +  +G   E   L  +  +
Sbjct: 1   LGKGGFGEVSACQMRATGKLYACKKLNKKRLK-------KRKGYEGAMVEKRILAKVHSR 53

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP--TRHKIAFGVAQ---GLA 647
            IV L   F +     LV   M  G+L    H   V  + P     +  F  AQ   GL 
Sbjct: 54  FIVSLAYAFQTKTDLCLVMTIMNGGDL--RYHIYNVDEENPGFPEPRACFYTAQIISGLE 111

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           +LH      II+RD+K  N+LLD +   +++D G+A  L+      S T   AGT G++A
Sbjct: 112 HLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKD---GQSKTKGYAGTPGFMA 165

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           PE     +     D ++ GV L E+I  R P
Sbjct: 166 PELLQGEEYDFSVDYFALGVTLYEMIAARGP 196

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 18/175 (10%)

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           +H  +  L+C F +      V EY+  G+L   + +     D P     A  V   L +L
Sbjct: 54  KHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRSR-KFDEPRSRFYAAEVTLALMFL 112

Query: 650 H-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           H HG    +I+RD+K  NILLD     K+ADFG+ K     G    TTT   GT  Y+AP
Sbjct: 113 HRHG----VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNG---VTTTTFCGTPDYIAP 165

Query: 709 EYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD-------NKNIIY--WVS 754
           E     +     D ++ GV++ E++ G+ P E D  D       + +++Y  W+S
Sbjct: 166 EILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWLS 220

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 72.4 bits (177), Expect = 8e-14
 Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 44/227 (19%)

Query: 525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT-- 581
           LE   + +K+G+G   TV+K     +  +VA+K++             +L+ ++G     
Sbjct: 4   LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEI-------------RLEHEEGAPCTA 50

Query: 582 --EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPN---------GNLWDALHKGLVHL 630
             EV  L N++H NIV L+    +  C  LV+EY+ +         GNL  ++H   + +
Sbjct: 51  IREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDSDLKQYLDNCGNLM-SMHNVKIFM 109

Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
                    F + +GL+Y H      I+HRD+K  N+L++   + K+ADFG+A+   A+ 
Sbjct: 110 ---------FQLLRGLSYCHK---RKILHRDLKPQNLLINEKGELKLADFGLAR---AKS 154

Query: 691 GKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGR 736
               T +    T  Y  P+    S++ +T  D++  G +L E+ TGR
Sbjct: 155 VPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGR 201

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 44/257 (17%)

Query: 533 KVGQGGSGTVYK---IDLNSGEVVAVKKL---WSQRTKVSASDTDQLQLDKGLKTEVETL 586
            +G+G  G VYK    +   G+  A+KK      Q T +S S   ++ L          L
Sbjct: 7   CIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIAL----------L 56

Query: 587 GNIRHKNIVKLYCYF-----SSLYCNLLVYEYMPNGNLWDALH----KGLVHLDWPTRHK 637
             ++H+N+V L   F      S+Y   L+++Y  + +LW  +        V +       
Sbjct: 57  RELKHENVVSLVEVFLEHADKSVY---LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKS 112

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL--DVNYQP--KVADFGIAKVLQA--RGG 691
           + + +  G+ YLH    + ++HRD+K  NIL+  +   +   K+ D G+A++  A  +  
Sbjct: 113 LLWQILNGVHYLHS---NWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPL 169

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKC-DVYSFGVVLMELITGRKPVEDDFGDNKNII 750
            D    V+  T  Y APE    ++  TK  D+++ G +  EL+T         G    I 
Sbjct: 170 ADLDPVVV--TIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIF---KGREAKIK 224

Query: 751 YWVSIKVDTKEGIMEVL 767
                + D  E I EVL
Sbjct: 225 KSNPFQRDQLERIFEVL 241

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 19/170 (11%)

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNL-WDALHKGLVHLDWPTRHKIAFGVAQ---GLAYL 649
           +  LYC F +      V E++  G+L +    KG   L     ++  F  A+   GL +L
Sbjct: 58  LTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDKGRFDL-----YRATFYAAEIVCGLQFL 112

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H      II+RD+K  N++LD +   K+ADFG+ K        D+  +   GT  Y+APE
Sbjct: 113 HS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCK---ENVFGDNRASTFCGTPDYIAPE 166

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT 759
                K T   D +SFGV+L E++ G+ P     GD+++ ++  SI+VDT
Sbjct: 167 ILQGLKYTFSVDWWSFGVLLYEMLIGQSPFH---GDDEDELF-ESIRVDT 212

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 30/223 (13%)

Query: 523 EILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQ-RTKVSASDTDQLQLDKGLK 580
           EI     +   VG G  G V    D  +G+ VA+KK+     T V A  T +        
Sbjct: 7   EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYR-------- 58

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALHKGLVH--LDWPTRHK 637
            E++ L ++RH+NI+ L   F S   ++  V E +        LH+ L    L+      
Sbjct: 59  -ELKLLKHLRHENIISLSDIFISPLEDIYFVTELLGTD-----LHRLLTSRPLEKQFIQY 112

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
             + + +GL Y+H    + ++HRD+K +NIL++ N   K+ DFG+A++      +D   T
Sbjct: 113 FLYQILRGLKYVHS---AGVVHRDLKPSNILINENCDLKICDFGLARI------QDPQMT 163

Query: 698 VIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPV 739
               T  Y APE   +  K   + D++S G +  E++ G KP+
Sbjct: 164 GYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEG-KPL 205

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 25/222 (11%)

Query: 531 KNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K+ VG+G  G V  + +  +G++ A+K +  +++ + A +T         + E + L   
Sbjct: 6   KSLVGRGHFGEVQVVREKATGDIYAMKVM--KKSVLLAQETVSF-----FEEERDILSIS 58

Query: 590 RHKNIVKLYCYFS---SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
               I +L   F    +LY   LV EY P G+L   L++   + D        F +A+ +
Sbjct: 59  NSPWIPQLQYAFQDKDNLY---LVMEYQPGGDLLSLLNR---YEDQFDEDMAQFYLAELV 112

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
             +H       +HRDIK  N+L+D     K+ADFG A  L A    +S   V  GT  Y+
Sbjct: 113 LAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPV--GTPDYI 170

Query: 707 APEYAYS----SKAT--TKCDVYSFGVVLMELITGRKPVEDD 742
           APE   +     K T   +CD +S GV+  E+I GR P  + 
Sbjct: 171 APEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEG 212

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 70.8 bits (173), Expect = 2e-13
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 29/220 (13%)

Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+G G  G V+    N    VAVK +      V A              E   
Sbjct: 6   ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEA-----------FLAEANV 54

Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGV 642
           +  ++H  +VKL+   +   +Y   ++ E+M  G+L D L          P     +  +
Sbjct: 55  MKTLQHDKLVKLHAVVTKEPIY---IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQI 111

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           A+G+A++        IHRD+++ NIL+  +   K+ADFG+A+V++     D+  T   G 
Sbjct: 112 AEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIE-----DNEYTAREGA 163

Query: 703 ---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
                + APE       T K DV+SFG++LME++T GR P
Sbjct: 164 KFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIP 203

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 17/162 (10%)

Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIA 639
           E + +  + H N+V+LY   +      +V EYM NG L + L   KG +  +W     + 
Sbjct: 49  EAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLL--DMC 106

Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK-VLQARGGKDSTTTV 698
             V + + YL     +  IHRD+ + N L+  +   KV+DFG+A+ VL      D   T 
Sbjct: 107 SDVCEAMEYLES---NGFIHRDLAARNCLVGEDNVVKVSDFGLARYVL------DDQYTS 157

Query: 699 IAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRK 737
             GT     +  PE    S+ ++K DV+SFGV++ E+ +  K
Sbjct: 158 SQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGK 199

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 45/294 (15%)

Query: 532 NKVGQGGSGTVYKIDLNSGEVVA---VKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
           +++G G  G V   + + G   A   VK+L     + SA+  +QL   +    EV+    
Sbjct: 1   DEIGNGWFGKVLLGEAHRGMSKARVVVKEL-----RASATPDEQLLFLQ----EVQPYRE 51

Query: 589 IRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL----DWPTRHKIAFGV 642
           + H N+++    C  S  Y  LLV E+ P G+L + L      +          ++A  V
Sbjct: 52  LNHPNVLQCLGQCIESIPY--LLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEV 109

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           A GL +LH    +  IH D+   N  L  +   K+ D+G+A + Q       T    A  
Sbjct: 110 ASGLLWLHQ---ADFIHSDLALRNCQLTADLSVKIGDYGLA-LEQYPEDYYITKDCHAVP 165

Query: 703 YGYLAPEYAYS-------SKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVS 754
             +LAPE              T K +++S GV + EL T   +P  D    ++ ++  V 
Sbjct: 166 LRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDL--SDEQVLKQVV 223

Query: 755 IKVDTKEGIMEVLDK-KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + D K      L K +L   + D   +V++         P TRPT  EV +LL
Sbjct: 224 REQDIK------LPKPQLDLKYSDRWYEVMQFCWL----DPETRPTAEEVHELL 267

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 88/313 (28%), Positives = 137/313 (43%), Gaps = 63/313 (20%)

Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ID ++GE VA+KK+      VS    D  ++ +    E++ L  +RH 
Sbjct: 8   IGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVS----DATRILR----EIKLLRLLRHP 59

Query: 593 NIVKLYCY--------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           +IV++           F  +Y   +V+E M +      LH+ +   D  T     F + Q
Sbjct: 60  DIVEIKHIMLPPSRREFKDIY---VVFELMESD-----LHQVIKANDDLTPEHHQFFLYQ 111

Query: 645 ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
               L Y+H    + + HRD+K  NIL + + + K+ DFG+A+V           T    
Sbjct: 112 LLRALKYIHT---ANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVA 168

Query: 702 TYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD- 758
           T  Y APE   S  SK T   D++S G +  E++TG KP+   F   KN+++ + +  D 
Sbjct: 169 TRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTG-KPL---F-PGKNVVHQLDLITDL 223

Query: 759 ----TKEGIMEVLDKK---------------LSGSFRDEMIQVLRIAIRCTSKSPATRPT 799
               + E I  V ++K                S  F +     LR+  R  +  P  RPT
Sbjct: 224 LGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPT 283

Query: 800 MNEVVQLLAEADP 812
             E     A ADP
Sbjct: 284 AEE-----ALADP 291

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 70.5 bits (172), Expect = 3e-13
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 29/217 (13%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G G  G VYK  ++N+GE+ A+K +  +       D   +Q       E+  + + +H
Sbjct: 16  RIGSGTYGDVYKARNVNTGELAAIKVIKLE----PGEDFAVVQ------QEIIMMKDCKH 65

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP-TRHKIAF---GVAQGLA 647
            NIV  +  +       +  E+   G+L D     + H+  P +  +IA+      QGL 
Sbjct: 66  SNIVAYFGSYLRRDKLWICMEFCGGGSLQD-----IYHVTGPLSESQIAYVSRETLQGLY 120

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH       +HRDIK  NILL  N   K+ADFG++  + A   K  +     GT  ++A
Sbjct: 121 YLHS---KGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKS---FIGTPYWMA 174

Query: 708 PEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVED 741
           PE A   +       CD+++ G+  +EL   + P+ D
Sbjct: 175 PEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFD 211

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 70.2 bits (172), Expect = 4e-13
 Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 46/292 (15%)

Query: 534 VGQGGSGTVYKIDL--NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-- 589
           +G G  G VYK+    N   ++A+K++          +       K  +   +++G+I  
Sbjct: 8   LGSGAFGCVYKVRKKNNGQNLLALKEI----------NVHNPAFGKDKRERDKSIGDIVS 57

Query: 590 ---------RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
                    RH NIV+ Y  F     LY  + + E  P G  +++L +            
Sbjct: 58  EVTIIKEQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWN 117

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           I   +   L YLH      I+HRD+   NI+L  + +  + DFG+AK    +   +S  T
Sbjct: 118 IFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGEDDKVTITDFGLAK----QKQPESKLT 171

Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV 757
            + GT  Y  PE   +     K DV++FG +L ++ T + P    +  N      +S+  
Sbjct: 172 SVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPF---YSTNM-----LSLAT 223

Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
              E + E L + +      ++I        C +     RP + +V  ++++
Sbjct: 224 KIVEAVYEPLPEGMYSEDVTDVIT------SCLTPDAEARPDIIQVSAMISD 269

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 75/306 (24%), Positives = 130/306 (42%), Gaps = 52/306 (16%)

Query: 522 REILEAMTEKNKVGQGGSGTVYK-----IDLNSGE-VVAVKKLWSQRTKVSASDTDQLQL 575
           R  L+ +T    +G+G  G V+      I+   GE +V VK L         +  + LQ 
Sbjct: 4   RSNLQEITT---LGRGEFGEVFLAKAKGIEEEGGETLVLVKAL-------QKTKDENLQS 53

Query: 576 DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLD 631
           +   + E++    + HKN+V+L   C  +  +  +L  EY   G+L   L   K      
Sbjct: 54  E--FRRELDMFRKLSHKNVVRLLGLCREAEPHYMIL--EYTDLGDLKQFLRATKSKDEKL 109

Query: 632 WP----TRHKIAFG--VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV 685
            P    T+ K+A    +A G+ +L +   +  +HRD+ + N L+    + KV+   ++K 
Sbjct: 110 KPPPLSTKQKVALCTQIALGMDHLSN---ARFVHRDLAARNCLVSSQREVKVSLLSLSKD 166

Query: 686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
           +           +I     +LAPE       +TK DV+SFGV++ E+ T G  P      
Sbjct: 167 VYNSEYYKLRNALIP--LRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFY---- 220

Query: 745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVL-RIAIRCTSKSPATRPTMNEV 803
                       +  +E +  +   KL     +     L ++  RC + +P  RP+ +E+
Sbjct: 221 -----------GLSDEEVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSEL 269

Query: 804 VQLLAE 809
           V  L E
Sbjct: 270 VSALGE 275

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 70.7 bits (173), Expect = 5e-13
 Identities = 74/236 (31%), Positives = 105/236 (44%), Gaps = 43/236 (18%)

Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV-ETLG--NI 589
           +G+G  G VY++    +  + A+K L S++  V+             K EV  T+G  NI
Sbjct: 1   IGKGTFGQVYQVRKKDTRRIYAMKVL-SKKEIVA-------------KKEVAHTIGERNI 46

Query: 590 RHKN-------IVKLYCYF---SSLYCNLLVYEYMPNGNL-WDALHKGLVHLDWPTRHKI 638
             +        IV L   F   S LY   LV +YM  G L W    +G    D     + 
Sbjct: 47  LVRTLLDESPFIVGLKFSFQTDSDLY---LVTDYMSGGELFWHLQKEGRFSED-----RA 98

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
            F +A+ +  L H     I++RD+K  NILLD      + DFG++K   A    + TT  
Sbjct: 99  KFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSK---ANLTDNKTTNT 155

Query: 699 IAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGRKP--VEDDFGDNKNIIY 751
             GT  YLAPE     K  TK  D +S GV++ E+  G  P   ED     +NI +
Sbjct: 156 FCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAF 211

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 70.8 bits (173), Expect = 5e-13
 Identities = 72/310 (23%), Positives = 128/310 (41%), Gaps = 33/310 (10%)

Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +++G G  G V+K+      ++  +KL     K +  +         +  E++ L     
Sbjct: 11  SELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQ--------IIRELQVLHECNS 62

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             IV  Y  F S     +  E+M  G+L D + K    +      K++  V +GL YL  
Sbjct: 63  PYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQILGKVSIAVIKGLTYLRE 121

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I+HRD+K +NIL++   + K+ DFG++  L      DS      GT  Y++PE  
Sbjct: 122 K--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMSPERL 174

Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKL 771
             +  + + D++S G+ L+E+  GR P+         +++   ++ D  E       +  
Sbjct: 175 QGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPP 234

Query: 772 SGSFRDEMIQVLRIAIRCTSKSPATRPTMN--EVVQLLAEADPCRFESCKFPNKSNKESS 829
                             +S  P +RP M   E++  +    P +  S  F     ++  
Sbjct: 235 GRPL--------------SSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVF-GAEFQDFV 279

Query: 830 NATKIKNPSE 839
           N   IKNP+E
Sbjct: 280 NKCLIKNPAE 289

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 70.0 bits (171), Expect = 5e-13
 Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 44/234 (18%)

Query: 531 KNKVGQGGSGTVYKID------LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           K ++G+G  G V+  +           +VAVK L              L   K  + E E
Sbjct: 10  KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKAL----------KDPTLAARKDFQREAE 59

Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH----KGLVHLDWPTRHK--- 637
            L N++H++IVK Y         ++V+EYM +G+L   L       ++ +D   R     
Sbjct: 60  LLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGE 119

Query: 638 --------IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA- 688
                   IA  +A G+ YL        +HRD+ + N L+  N   K+ DFG+++ + + 
Sbjct: 120 LGLSQMLHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST 176

Query: 689 ---RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              R G  +   +      ++ PE     K TT+ DV+SFGV+L E+ T G++P
Sbjct: 177 DYYRVGGHTMLPI-----RWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQP 225

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 6e-13
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 80  LHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGN 139
           L G IP  I  +  L  + L+GN I G+IPP +G + +L  L+L YN    G+IPE LG 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQ 488

Query: 140 LTELTDLDMSVNHLSGKIPESI 161
           LT L  L+++ N LSG++P ++
Sbjct: 489 LTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 70.6 bits (173), Expect = 6e-13
 Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 33/239 (13%)

Query: 521 QREILEAMTEKNK-VGQGGSGTVYK-IDLNSGEVVAVKKL----WSQRTKVSASDTDQLQ 574
              I E   +K   +G+G  G V K  D  +G++VA+KK+     S              
Sbjct: 3   SFSISERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCG 62

Query: 575 LDKGLKTEVETLGNIRHKNI---VKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +      E++ +  I+H+NI   V +Y      + NL V + M   +L   + +  + L 
Sbjct: 63  IHFTTLRELKIMNEIKHENIMGLVDVYV--EGDFINL-VMDIM-ASDLKKVVDRK-IRLT 117

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA-------- 683
                 I   +  GL  LH       +HRD+   NI ++     K+ADFG+A        
Sbjct: 118 ESQVKCILLQILNGLNVLHK---WYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPY 174

Query: 684 -----KVLQARGGKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGR 736
                K    +  ++ T+ V+  T  Y APE    + K     D++S G +  EL+TG+
Sbjct: 175 SDTLSKDETMQRREEMTSKVV--TLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGK 231

Length = 335

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 70.1 bits (171), Expect = 6e-13
 Identities = 87/305 (28%), Positives = 127/305 (41%), Gaps = 55/305 (18%)

Query: 516 RISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           R   D  E+ E + E   +G G  G VYK        +A  K+   +++    D      
Sbjct: 5   RRDLDPNEVWEIIGE---LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELED------ 55

Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDA----LHKGLVHLD 631
                 E+E L    H  IVKL   F       ++ E+ P G + DA    L +GL    
Sbjct: 56  ---YMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAV-DAIMLELDRGLTE-- 109

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA----KVLQ 687
            P    I   + + L YLH      IIHRD+K+ N+LL ++   K+ADFG++    K LQ
Sbjct: 110 -PQIQVICRQMLEALQYLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQ 165

Query: 688 ARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDD 742
            R   DS      GT  ++APE         +    K D++S G+ L+E+    +P   +
Sbjct: 166 RR---DS----FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEM-AQIEPPHHE 217

Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
               +     V +K+   E        K S  FRD     L+ A+    K P TRP+   
Sbjct: 218 LNPMR-----VLLKIAKSEPPTLSQPSKWSMEFRD----FLKTAL---DKHPETRPS--- 262

Query: 803 VVQLL 807
             QLL
Sbjct: 263 AAQLL 267

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 40/221 (18%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKK--LWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K+G+G  G VYK  +  +G++VA+KK  L S+   V ++   ++ L K L+         
Sbjct: 7   KIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQ--------- 57

Query: 590 RHKNIV----------KLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIA 639
            H NIV          +LY  F  L  +L   +Y+      D+L KG  ++D        
Sbjct: 58  -HPNIVCLQDVLMQESRLYLIFEFLSMDL--KKYL------DSLPKG-QYMDAELVKSYL 107

Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
           + + QG+ + H      ++HRD+K  N+L+D     K+ADFG+A+   A G      T  
Sbjct: 108 YQILQGILFCHS---RRVLHRDLKPQNLLIDNKGVIKLADFGLAR---AFGIPVRVYTHE 161

Query: 700 AGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPV 739
             T  Y APE    S + +T  D++S G +  E+ T +KP+
Sbjct: 162 VVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMAT-KKPL 201

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 69.9 bits (171), Expect = 9e-13
 Identities = 73/248 (29%), Positives = 105/248 (42%), Gaps = 28/248 (11%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-H 591
           +G+G  G V    L  SG + AVK L   +  V   D D     +   TE   L   R H
Sbjct: 3   LGKGSFGKVMLARLKESGRLYAVKVL---KKDVILQDDDV----ECTMTEKRILSLARNH 55

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             + +LYC F +      V E++  G+L   + K     D       A  +   L +LH 
Sbjct: 56  PFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEITSALMFLHD 114

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD     K+ADFG+ K      GK  TT+   GT  Y+APE  
Sbjct: 115 ---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKE-GIFNGK--TTSTFCGTPDYIAPEIL 168

Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD-------NKNIIY--WVSIKVDTKEG 762
                    D ++ GV+L E++ G  P E +  D       N  ++Y  W+S        
Sbjct: 169 QEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLS---QDAVD 225

Query: 763 IMEVLDKK 770
           I++    K
Sbjct: 226 ILKAFMTK 233

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 23/212 (10%)

Query: 534 VGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+GG G V+++      ++G++ A+K L       +  DT         K E   L  +
Sbjct: 4   LGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHT------KAERNILEAV 57

Query: 590 RHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           +H  IV L   F +   LY   L+ EY+  G L+  L +  + ++      ++  ++  L
Sbjct: 58  KHPFIVDLIYAFQTGGKLY---LILEYLSGGELFMHLEREGIFMEDTACFYLS-EISLAL 113

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            +LH      II+RD+K  NILLD     K+ DFG+ K     G   + T    GT  Y+
Sbjct: 114 EHLHQ---QGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEG---TVTHTFCGTIEYM 167

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           APE    S      D +S G ++ +++TG  P
Sbjct: 168 APEILMRSGHGKAVDWWSLGALMYDMLTGAPP 199

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 33/84 (39%), Positives = 49/84 (58%)

Query: 153 LSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQW 212
           L G IP  I +L  L+ + L  NS+ G I   + + T+L +L L  NS  G +P+ LGQ 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 213 SPLVVLDLSENKLSGPLPAKVCSR 236
           + L +L+L+ N LSG +PA +  R
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 69.3 bits (169), Expect = 1e-12
 Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 27/211 (12%)

Query: 533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G +G V    + +SG++VAVKK+          D  + Q  + L  EV  + + +H
Sbjct: 27  KIGEGSTGIVCIATVKSSGKLVAVKKM----------DLRKQQRRELLFNEVVIMRDYQH 76

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           +N+V++Y  +       +V E++  G L D +      ++      +   V + L+ LH 
Sbjct: 77  ENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLKALSVLHA 134

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFG----IAKVLQARGGKDSTTTVIAGTYGYLA 707
                +IHRDIKS +ILL  + + K++DFG    ++K +  R         + GT  ++A
Sbjct: 135 ---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS-------LVGTPYWMA 184

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           PE         + D++S G++++E++ G  P
Sbjct: 185 PELISRLPYGPEVDIWSLGIMVIEMVDGEPP 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 68.9 bits (168), Expect = 1e-12
 Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 16/209 (7%)

Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G V    +  +G++ A KKL  +R K    ++  L        E + L  +  +
Sbjct: 8   LGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALN-------EKQILEKVNSR 60

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNL-WDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
            +V L   + +     LV   M  G+L +   H G    +       A  +  GL  LH 
Sbjct: 61  FVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQ 120

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I++RD+K  NILLD +   +++D G+A  +     +  T     GT GY+APE  
Sbjct: 121 ---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVP----EGQTIKGRVGTVGYMAPEVV 173

Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVE 740
            + + T   D ++ G +L E+I G+ P +
Sbjct: 174 KNERYTFSPDWWALGCLLYEMIAGQSPFQ 202

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 34/219 (15%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G  G VYK  D N+G++VA+KK        +  + D+  +      E+  L  +  
Sbjct: 8   KIGEGTYGKVYKARDKNTGKLVALKK--------TRLEMDEEGIPPTALREISLLQMLSE 59

Query: 592 KN-IVKLYCYF--------SSLYCNLLVYEYMPNG--NLWDALHKGLVH-LDWPTRHKIA 639
              IV+L             SLY   LV+EY+ +      D+  +G    L   T     
Sbjct: 60  SIYIVRLLDVEHVEEKNGKPSLY---LVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFM 116

Query: 640 FGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDSTTT 697
           + + +G+A+ H HG    ++HRD+K  N+L+D      K+AD G+ +         +   
Sbjct: 117 YQLLKGVAHCHKHG----VMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEI 172

Query: 698 VIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITG 735
           V   T  Y APE    S+  +T  D++S G +  E+   
Sbjct: 173 V---TLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRK 208

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 64/254 (25%), Positives = 102/254 (40%), Gaps = 65/254 (25%)

Query: 535 GQGGSGTVYKIDL-NSGEVVAVK----KLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           G+G  G V+ + L  +G++ A+K    K   +R KV           K + TE E L  +
Sbjct: 10  GKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKV-----------KRVLTEQEILATL 58

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK------IAFGVA 643
            H  +  LY  F +     LV +Y P G L+  L +           K        F  A
Sbjct: 59  DHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQR--------QPGKCLSEEVARFYAA 110

Query: 644 Q---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK--------VLQARGGK 692
           +    L YLH   L  I++RD+K  NILL  +    ++DF ++K        V +A    
Sbjct: 111 EVLLALEYLH---LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKG 167

Query: 693 DSTTTVIA------------------GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
              ++V +                  GT  Y+APE        +  D ++ G++L E++ 
Sbjct: 168 SRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLY 227

Query: 735 GRKPVEDDFGDNKN 748
           G  P     G N++
Sbjct: 228 GTTPF---KGSNRD 238

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 70/230 (30%), Positives = 106/230 (46%), Gaps = 49/230 (21%)

Query: 534 VGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY    ID +  ++  AVK L     ++    TD  ++++ LK E   + + 
Sbjct: 3   IGKGHFGCVYHGTLIDSDGQKIHCAVKSL----NRI----TDLEEVEQFLK-EGIIMKDF 53

Query: 590 RHKNIVKLY-CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK-----IAFG-- 641
            H N++ L      S    L+V  YM +G+L + +          T +      I FG  
Sbjct: 54  SHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRS-------ETHNPTVKDLIGFGLQ 106

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA---------KVLQARGGK 692
           VA+G+ YL        +HRD+ + N +LD ++  KVADFG+A          V    G K
Sbjct: 107 VAKGMEYLAS---KKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAK 163

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
                       ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 164 LPVK--------WMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 205

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 69.7 bits (170), Expect = 2e-12
 Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 17/213 (7%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  +   S + V   KL S+   +  SD+           E + +       
Sbjct: 51  IGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDS------AFFWEERDIMAFANSPW 104

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +V+L+C F       +V EYMP G+L + +    V   W       F  A+ +  L    
Sbjct: 105 VVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYDVPEKWAK-----FYTAEVVLALDAIH 159

Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +IHRD+K  N+LLD +   K+ADFG    +   G     T V  GT  Y++PE   S
Sbjct: 160 SMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAV--GTPDYISPEVLKS 217

Query: 714 SKAT----TKCDVYSFGVVLMELITGRKPVEDD 742
                    +CD +S GV L E++ G  P   D
Sbjct: 218 QGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD 250

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 79/317 (24%), Positives = 119/317 (37%), Gaps = 66/317 (20%)

Query: 529 TEKNKVGQGG----------SGTVYKIDLNSGEV-----VAVKKLWSQRTKVSASDTDQL 573
            EK   GQ G               K    +        VAVK L     +  ASD  + 
Sbjct: 10  VEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVL-----RPDASDNARE 64

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHK------ 625
              K    EV+ L  +   NI +L   C      C  ++ EYM NG+L   L K      
Sbjct: 65  DFLK----EVKILSRLSDPNIARLLGVCTVDPPLC--MIMEYMENGDLNQFLQKHVAETS 118

Query: 626 ----GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
                   L + T   +A  +A G+ YL        +HRD+ + N L+  NY  K+ADFG
Sbjct: 119 GLACNSKSLSFSTLLYMATQIASGMRYLESLNF---VHRDLATRNCLVGKNYTIKIADFG 175

Query: 682 IAKVLQAR-----GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-- 734
           +++ L +       G       I     ++A E     K TTK DV++FGV L E++T  
Sbjct: 176 MSRNLYSSDYYRVQG--RAPLPIR----WMAWESVLLGKFTTKSDVWAFGVTLWEILTLC 229

Query: 735 GRKPVE--DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSK 792
             +P E   D    +N  +      D      ++   +     +D    +  + + C  +
Sbjct: 230 REQPYEHLTDQQVIENAGH---FFRDDG---RQIYLPRPPNCPKD----IYELMLECWRR 279

Query: 793 SPATRPTMNEVVQLLAE 809
               RPT  E+   L  
Sbjct: 280 DEEDRPTFREIHLFLQR 296

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 68.6 bits (167), Expect = 2e-12
 Identities = 66/206 (32%), Positives = 93/206 (45%), Gaps = 20/206 (9%)

Query: 538 GSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G GT  K+ L     SG+  A+K L  ++  + A D     L     TE   L N RH  
Sbjct: 4   GKGTFGKVILVREKASGKYYAMKIL--KKEVIIAKDEVAHTL-----TESRVLKNTRHPF 56

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +  L   F +      V EY+  G L+  L +  V  +  TR   A  +   L YLH G 
Sbjct: 57  LTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGA-EIVSALDYLHSG- 114

Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT-VIAGTYGYLAPEYAY 712
              I++RD+K  N++LD +   K+ DFG+ K     G  D+ T     GT  YLAPE   
Sbjct: 115 --KIVYRDLKLENLMLDKDGHIKITDFGLCK----EGITDAATMKTFCGTPEYLAPEVLE 168

Query: 713 SSKATTKCDVYSFGVVLMELITGRKP 738
            +      D +  GVV+ E++ GR P
Sbjct: 169 DNDYGRAVDWWGLGVVMYEMMCGRLP 194

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 14/198 (7%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V+K  L     VAVK            D  Q +L     +E   L    H N
Sbjct: 3   LGKGNFGEVFKGTLKDKTPVAVK--------TCKEDLPQ-ELKIKFLSEARILKQYDHPN 53

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL    +      +V E +P G+    L K    L      K A   A G+AYL    
Sbjct: 54  IVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLE--- 110

Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
               IHRD+ + N L+  N   K++DFG+++  Q   G  S++ +      + APE    
Sbjct: 111 SKNCIHRDLAARNCLVGENNVLKISDFGMSR--QEDDGIYSSSGLKQIPIKWTAPEALNY 168

Query: 714 SKATTKCDVYSFGVVLME 731
            + +++ DV+S+G++L E
Sbjct: 169 GRYSSESDVWSYGILLWE 186

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 34/222 (15%)

Query: 533 KVGQGGSGTVYK---IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           ++GQG  G V      + +  E VA+KK+ +  +K        +   + L+ E++ L + 
Sbjct: 7   ELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKK-------ILAKRALR-ELKLLRHF 58

Query: 590 R-HKNIVKLY---CYFSSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDWP-TRHKIAFGVA 643
           R HKNI  LY     F   +  L +YE      L +A LH+ ++    P T       + 
Sbjct: 59  RGHKNITCLYDMDIVFPGNFNELYLYE-----ELMEADLHQ-IIRSGQPLTDAHFQSFIY 112

Query: 644 Q---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS--TTTV 698
           Q   GL Y+H    + ++HRD+K  N+L++ + + K+ DFG+A+      G+++   T  
Sbjct: 113 QILCGLKYIHS---ANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEY 169

Query: 699 IAGTYGYLAPEYAYSSKATTKC-DVYSFGVVLMELITGRKPV 739
           +A T  Y APE   S ++ TK  DV+S G +L EL+ GRKPV
Sbjct: 170 VA-TRWYRAPEIMLSFQSYTKAIDVWSVGCILAELL-GRKPV 209

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 64/224 (28%), Positives = 90/224 (40%), Gaps = 40/224 (17%)

Query: 531 KNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
              +G G  G V       +GE  A+K L  +R  +       +  +K +  E      +
Sbjct: 23  GETLGTGSFGRVRIAKHKGTGEYYAIKCL-KKREILKMKQVQHVAQEKSILME------L 75

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ-- 644
            H  IV + C F   + +Y    + E++  G L+  L K           +    VA+  
Sbjct: 76  SHPFIVNMMCSFQDENRVY---FLLEFVVGGELFTHLRKA---------GRFPNDVAKFY 123

Query: 645 ------GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
                    YLH      II+RD+K  N+LLD     KV DFG AK +  R      T  
Sbjct: 124 HAELVLAFEYLHS---KDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR------TFT 174

Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           + GT  YLAPE   S       D ++ GV+L E I G  P  DD
Sbjct: 175 LCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDD 218

Length = 329

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 67.4 bits (164), Expect = 5e-12
 Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 29/225 (12%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K ++G+G  G V+  +  +      K L + +T   ASD  +    K    E E L N++
Sbjct: 10  KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNAR----KDFHREAELLTNLQ 65

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKG------LVHLDWPTRHK------I 638
           H++IVK Y         ++V+EYM +G+L   L         +   + P          I
Sbjct: 66  HEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHI 125

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA----RGGKDS 694
           A  +A G+ YL        +HRD+ + N L+  N   K+ DFG+++ + +    R G  +
Sbjct: 126 AQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHT 182

Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              +      ++ PE     K TT+ DV+S GVVL E+ T G++P
Sbjct: 183 MLPI-----RWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQP 222

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 66.9 bits (163), Expect = 5e-12
 Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 27/217 (12%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR- 590
           ++G G  GTVYK  D +SG  VA+K +  Q        T++  L      EV  L  +  
Sbjct: 7   EIGVGAYGTVYKARDPHSGHFVALKSVRVQ--------TNEDGLPLSTVREVALLKRLEA 58

Query: 591 --HKNIVKLYCYFSSLYCN-----LLVYEYMPNGNLWDALHKGLV-HLDWPTRHKIAFGV 642
             H NIV+L    ++   +      LV+E++ + +L   L K     L   T   +    
Sbjct: 59  FDHPNIVRLMDVCATSRTDRETKVTLVFEHV-DQDLRTYLDKVPPPGLPAETIKDLMRQF 117

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            +GL +LH    + I+HRD+K  NIL+    Q K+ADFG+A++   +       T +  T
Sbjct: 118 LRGLDFLH---ANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQ----MALTPVVVT 170

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
             Y APE    S   T  D++S G +  E+   RKP+
Sbjct: 171 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMFR-RKPL 206

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 52/271 (19%)

Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLV 610
           VAVK L     K +A  +++  L   LK  +  LGN  H+NIV L   C        L++
Sbjct: 68  VAVKML-----KPTAHSSEREALMSELKI-MSHLGN--HENIVNLLGACTIGGPI--LVI 117

Query: 611 YEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL 669
            EY   G+L + L  K    L        ++ VA+G+A+L        IHRD+ + N+LL
Sbjct: 118 TEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNVLL 174

Query: 670 DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY---GYLAPEYAYSSKATTKCDVYSFG 726
                 K+ DFG+A+ +      DS   V         ++APE  ++   T + DV+S+G
Sbjct: 175 THGKIVKICDFGLARDIM----NDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYG 230

Query: 727 VVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQ---- 781
           ++L E+ + G  P                + VD+K        K +   +R  M Q    
Sbjct: 231 ILLWEIFSLGSNPYPG-------------MPVDSK------FYKLIKEGYR--MAQPEHA 269

Query: 782 ---VLRIAIRCTSKSPATRPTMNEVVQLLAE 809
              +  I   C    P  RPT  ++VQL+ +
Sbjct: 270 PAEIYDIMKTCWDADPLKRPTFKQIVQLIGK 300

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 67.4 bits (165), Expect = 6e-12
 Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 36/219 (16%)

Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V    +  + E VA+KK+         +  D     + L+ E++ L ++ H+
Sbjct: 13  IGRGAYGIVCSAKNSETNEKVAIKKI----ANAFDNRIDAK---RTLR-EIKLLRHLDHE 64

Query: 593 NIVKL--------YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           N++ +           F+ +Y   +VYE M        LH+ +      +     + + Q
Sbjct: 65  NVIAIKDIMPPPHREAFNDVY---IVYELMDTD-----LHQIIRSSQTLSDDHCQYFLYQ 116

Query: 645 ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
              GL Y+H    + ++HRD+K +N+LL+ N   K+ DFG+A+    +G   +   V   
Sbjct: 117 LLRGLKYIHS---ANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVV--- 170

Query: 702 TYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPV 739
           T  Y APE   + S+ TT  DV+S G +  EL+ GRKP+
Sbjct: 171 TRWYRAPELLLNCSEYTTAIDVWSVGCIFAELL-GRKPL 208

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 66.5 bits (163), Expect = 8e-12
 Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 64/234 (27%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           N++ +G  G VY+  D  +GE+VA+KKL  ++ K     T        L+ E+  L  ++
Sbjct: 11  NRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPIT-------SLR-EINILLKLQ 62

Query: 591 HKNIV------------KLYCYFSSLYCNLLVYEYMPNGNLWDALH--KGLVHLDWPTRH 636
           H NIV            K+Y          +V EY+         H  K L+        
Sbjct: 63  HPNIVTVKEVVVGSNLDKIY----------MVMEYVE--------HDLKSLM-----ETM 99

Query: 637 KIAFGVAQ----------GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
           K  F  ++          G+A+LH      I+HRD+K++N+LL+     K+ DFG+A+  
Sbjct: 100 KQPFLQSEVKCLMLQLLSGVAHLHDNW---ILHRDLKTSNLLLNNRGILKICDFGLAREY 156

Query: 687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPV 739
                K  T  V+  T  Y APE    +K  +T  D++S G +  EL+T +KP+
Sbjct: 157 G-SPLKPYTQLVV--TLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLT-KKPL 206

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 1e-11
 Identities = 34/85 (40%), Positives = 48/85 (56%)

Query: 126 NQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
           NQ L G IP ++  L  L  +++S N + G IP S+  +  L VL L  NS +G I   +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLG 210
              T+L +L+L  NSL+G VP  LG
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           +E   +G   H NI+ L    +     +++ E+M NG L   L +            +  
Sbjct: 54  SEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR 113

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
           G+A G+ YL        +HRD+ + NIL++ N   KV+DFG+++ L+      + T+ + 
Sbjct: 114 GIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLG 170

Query: 701 GTYG--YLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
           G     + APE     K T+  DV+S+G+V+ E+++ G +P  D
Sbjct: 171 GKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWD 214

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 60/239 (25%), Positives = 109/239 (45%), Gaps = 25/239 (10%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G    V  + L   + +   K+  +       D D +Q +K +  +  +     +  
Sbjct: 3   IGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASS-----NPF 57

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK--IAFGVAQGLAYLHH 651
           +V L+  F +     LV EY+  G+L   + +       P  H    A  +   L +LH 
Sbjct: 58  LVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQR---QRKLPEEHARFYAAEICIALNFLHE 114

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD +   K+ D+G+ K  +  G  D+T+T   GT  Y+APE  
Sbjct: 115 ---RGIIYRDLKLDNVLLDADGHIKLTDYGMCK--EGLGPGDTTST-FCGTPNYIAPEIL 168

Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
              +     D ++ GV++ E++ GR P  D   DN ++        +T++ + +V+ +K
Sbjct: 169 RGEEYGFSVDWWALGVLMFEMMAGRSPF-DIITDNPDM--------NTEDYLFQVILEK 218

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 65.8 bits (160), Expect = 1e-11
 Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 33/228 (14%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K ++G+G  G V+  + ++      K L + +    AS++ +    +    E E L  ++
Sbjct: 10  KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQR----EAELLTVLQ 65

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNL--------WDA--LHKG----LVHLDWPTRH 636
           H++IV+ Y   +     L+V+EYM +G+L         DA  L  G       L      
Sbjct: 66  HQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQML 125

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR-----GG 691
            IA  +A G+ YL   L    +HRD+ + N L+      K+ DFG+++ + +      GG
Sbjct: 126 AIASQIASGMVYLA-SL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGG 182

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           +  T   I     ++ PE     K TT+ D++SFGVVL E+ T G++P
Sbjct: 183 R--TMLPIR----WMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQP 224

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 35/235 (14%)

Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNL----LVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
           E++ L  I   NI+K+Y +   +  +L    L+ EY   G L + L K    L + T+  
Sbjct: 68  EIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKEK-DLSFKTKLD 126

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           +A    +GL  L+     P  ++++ S + L+  NY+ K+   G+ K+L +   K+    
Sbjct: 127 MAIDCCKGLYNLYKYTNKP--YKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFM 184

Query: 698 VIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI 755
           V      Y + +      S+ T K D+YS GVVL E+ TG+ P E+              
Sbjct: 185 V------YFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFEN-------------- 224

Query: 756 KVDTKEGIMEVLDKKLSGSFR---DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + TKE I +++  K + S +   D  +++  I   CTS     RP + E++  L
Sbjct: 225 -LTTKE-IYDLIINK-NNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNL 276

Length = 283

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 66.2 bits (161), Expect = 1e-11
 Identities = 68/228 (29%), Positives = 103/228 (45%), Gaps = 45/228 (19%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           ++ +G+G  G V K  +    +    A+K     R K  AS  D     +    E+E L 
Sbjct: 12  QDVIGEGNFGQVLKARIKKDGLRMDAAIK-----RMKEYASKDDH----RDFAGELEVLC 62

Query: 588 NI-RHKNIVKLY--C-YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP---------- 633
            +  H NI+ L   C +   LY   L  EY P+GNL D L K  V    P          
Sbjct: 63  KLGHHPNIINLLGACEHRGYLY---LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 119

Query: 634 ---TRHKIAFG--VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
              ++  + F   VA+G+ YL        IHRD+ + NIL+  NY  K+ADFG+++    
Sbjct: 120 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSR---- 172

Query: 689 RGGKDSTTTVIAGTYG--YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
             G++       G     ++A E    S  TT  DV+S+GV+L E+++
Sbjct: 173 --GQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 218

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 7/158 (4%)

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 44  TESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGA- 102

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            +   L YLH      +++RD+K  N++LD +   K+ DFG+ K   + G   +T     
Sbjct: 103 EIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDG---ATMKTFC 156

Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 157 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 194

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 66/212 (31%), Positives = 96/212 (45%), Gaps = 30/212 (14%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG G  G V    D  +G  VA+KKL   R   SA         K    E+  L ++ H+
Sbjct: 23  VGSGAYGQVCSAFDTKTGRKVAIKKL--SRPFQSAIHA------KRTYRELRLLKHMDHE 74

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFGVAQ---G 645
           N++ L   F   SSL     VY       L  A L+  +V     +   I F V Q   G
Sbjct: 75  NVIGLLDVFTPASSLEDFQDVYLVTH---LMGADLNN-IVKCQKLSDDHIQFLVYQILRG 130

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L Y+H    + IIHRD+K +NI ++ + + K+ DFG+A+        D   T    T  Y
Sbjct: 131 LKYIHS---AGIIHRDLKPSNIAVNEDCELKILDFGLARH------TDDEMTGYVATRWY 181

Query: 706 LAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
            APE   +     +  D++S G ++ EL+TG+
Sbjct: 182 RAPEIMLNWMHYNQTVDIWSVGCIMAELLTGK 213

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 37/226 (16%)

Query: 523 EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQ-RTKVSASDTDQLQLDKGLK 580
           E+ E  T   +VG G  G+V   ID  +GE VA+KKL    ++++ A         K   
Sbjct: 12  ELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFA---------KRAY 62

Query: 581 TEVETLGNIRHKNIVKLYCYFSS------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
            E+  L +++H+N++ L   F+S           LV  YM        L K + H    +
Sbjct: 63  RELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQTD-----LQKIMGHP--LS 115

Query: 635 RHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
             K+ + V Q   GL Y+H    + IIHRD+K  N+ ++ + + K+ DFG+A+       
Sbjct: 116 EDKVQYLVYQMLCGLKYIHS---AGIIHRDLKPGNLAVNEDCELKILDFGLAR------H 166

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
            D+  T    T  Y APE   +     +  D++S G ++ E++TG+
Sbjct: 167 ADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGK 212

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 65.0 bits (158), Expect = 3e-11
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 12/205 (5%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V      + E     K+  ++  +   +   +  ++ +      L N++H  
Sbjct: 3   IGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNV-----LLKNVKHPF 57

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +V L+  F +      V +Y+  G L+  L +    L+ P     A  +A  L YLH   
Sbjct: 58  LVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLE-PRARFYAAEIASALGYLHS-- 114

Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I++RD+K  NILLD      + DFG+ K        + TT+   GT  YLAPE  + 
Sbjct: 115 -LNIVYRDLKPENILLDSQGHIVLTDFGLCK---ENIEHNGTTSTFCGTPEYLAPEVLHK 170

Query: 714 SKATTKCDVYSFGVVLMELITGRKP 738
                  D +  G VL E++ G  P
Sbjct: 171 QPYDRTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 42/222 (18%)

Query: 534 VGQGGSGTVYK-IDLNSGEV----VAVKKL--WSQRTKVSASDTDQLQLDKGLKTEVETL 586
           +G G  GTV+K I +  G+     VA+K +   S R       TD +            +
Sbjct: 15  LGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEI-TDHML----------AM 63

Query: 587 GNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWPTRHKI 638
           G++ H  IV+L   C  +SL    LV +  P G+L D +  H+  +     L+W  +   
Sbjct: 64  GSLDHAYIVRLLGICPGASLQ---LVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQ--- 117

Query: 639 AFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
              +A+G+ YL  H +    +HR++ + NILL  +   ++ADFG+A +L     K    +
Sbjct: 118 ---IAKGMYYLEEHRM----VHRNLAARNILLKSDSIVQIADFGVADLLYP-DDKKYFYS 169

Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
                  ++A E     + T + DV+S+GV + E+++ G +P
Sbjct: 170 EHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEP 211

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 72/252 (28%), Positives = 112/252 (44%), Gaps = 38/252 (15%)

Query: 507 FPYDVKSFHRISF----DQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQ 561
           FP   K+    SF    D  EI+E       +G+G  G V+K+ +  +G   AVK L   
Sbjct: 1   FPLSGKTIIFDSFPDPSDTWEIIET------IGKGTYGKVFKVLNKKNGSKAAVKIL--- 51

Query: 562 RTKVSASDTDQLQ-LDKGLKTEVETLGNIR-HKNIVKLY-CYFSSLYCN----LLVYEYM 614
                    D +  +D+ ++ E   L  +  H N+VK Y  Y+     N     LV E  
Sbjct: 52  ---------DPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELC 102

Query: 615 PNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ 674
             G++ D +   L   +      IA+ + + L  L H  ++  IHRD+K  NILL     
Sbjct: 103 NGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGG 162

Query: 675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY-----AYSSKATTKCDVYSFGVVL 729
            K+ DFG++  L +   + +T+    GT  ++APE         S    +CDV+S G+  
Sbjct: 163 VKLVDFGVSAQLTSTRLRRNTSV---GTPFWMAPEVIACEQQLDSTYDARCDVWSLGITA 219

Query: 730 MELITGRKPVED 741
           +EL  G  P+ D
Sbjct: 220 IELGDGDPPLAD 231

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 65.0 bits (158), Expect = 4e-11
 Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 28/222 (12%)

Query: 523 EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E+ +   +  +VG G  GTV   +D  +G  VA+KKL+    +   S+       K    
Sbjct: 12  EVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLY----RPFQSEL----FAKRAYR 63

Query: 582 EVETLGNIRHKNIVKLYCYFS---SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E+  L +++H+N++ L   F+   SL      Y  MP   +   L K L+  +  +  +I
Sbjct: 64  ELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPF--MGTDLGK-LMKHEKLSEDRI 120

Query: 639 AFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
            F V Q   GL Y+H    + IIHRD+K  N+ ++ + + K+ DFG+A+  Q     DS 
Sbjct: 121 QFLVYQMLKGLKYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLAR--QT----DSE 171

Query: 696 TTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGR 736
            T    T  Y APE   +    T   D++S G ++ E++TG+
Sbjct: 172 MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGK 213

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 64.3 bits (156), Expect = 5e-11
 Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 26/217 (11%)

Query: 533 KVGQGGSGTVYKI-DL-NSGEVVAVKKLWSQRTK--VSASDTDQLQLDKGLKTEVETLGN 588
           ++G+G  G V+K  DL N G  VA+K++  Q  +  +  S   ++ + + L+T       
Sbjct: 8   EIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET------- 60

Query: 589 IRHKNIVKLY--CYFSSLYCNL---LVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGV 642
             H N+V+L+  C  S         LV+E++ + +L   L K     +   T   + F +
Sbjct: 61  FEHPNVVRLFDVCTVSRTDRETKLTLVFEHV-DQDLTTYLDKVPEPGVPTETIKDMMFQL 119

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            +GL +LH      ++HRD+K  NIL+  + Q K+ADFG+A++   +       T +  T
Sbjct: 120 LRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ----MALTSVVVT 172

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
             Y APE    S   T  D++S G +  E+   RKP+
Sbjct: 173 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPL 208

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 63.8 bits (155), Expect = 5e-11
 Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 50/282 (17%)

Query: 534 VGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG+G  G    +  +NS +  A+K++   R   S+S  +        + E   L  ++H 
Sbjct: 8   VGEGSFGRALLVQHVNSDQKYAMKEI---RLPKSSSAVEDS------RKEAVLLAKMKHP 58

Query: 593 NIVKLYCYFSS---LYCNLLVYEYMPNGNLWDA--LHKGLVH-----LDWPTRHKIAFGV 642
           NIV     F +   LY   +V EY   G+L     L +G +      L W  +      +
Sbjct: 59  NIVAFKESFEADGHLY---IVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQ------M 109

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
             G+ ++H      ++HRDIKS NI L  N + K+ DFG A++L + G    T     GT
Sbjct: 110 CLGVQHIHE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACT---YVGT 163

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
             Y+ PE   +     K D++S G +L EL T + P +      KN+I  V       +G
Sbjct: 164 PYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQA--NSWKNLILKVC------QG 215

Query: 763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
             + L    S   R  + Q+ +       ++P +RP+   ++
Sbjct: 216 SYKPLPSHYSYELRSLIKQMFK-------RNPRSRPSATTIL 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 6/94 (6%)

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           +GL YLH    + I+HRDIK  N+L++ N   K+ DFG+A+V +    K  T  V+  T 
Sbjct: 114 RGLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVV--TQ 168

Query: 704 GYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
            Y APE    S+  T+  D++S G +  EL+  R
Sbjct: 169 YYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRR 202

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 63.5 bits (154), Expect = 5e-11
 Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 34/276 (12%)

Query: 534 VGQGGSGTVYKIDLNS-GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG+G  G V  +   + G+   +KKL  +    +AS  ++    K  + E + L  ++H 
Sbjct: 8   VGKGSYGEVSLVRHRTDGKQYVIKKLNLR----NASRRER----KAAEQEAQLLSQLKHP 59

Query: 593 NIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV--AQGLAYL 649
           NIV     +      L +V  +   G+L+  L +    L  P    + + V  A  L YL
Sbjct: 60  NIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKL-LPENQVVEWFVQIAMALQYL 118

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H      I+HRD+K+ N+ L      KV D GIA+VL+ +   D  +T+I GT  Y++PE
Sbjct: 119 HE---KHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQ--CDMASTLI-GTPYYMSPE 172

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
              +     K DV++ G  + E+ T +     +  D  +++Y              +++ 
Sbjct: 173 LFSNKPYNYKSDVWALGCCVYEMATLKHAF--NAKDMNSLVY-------------RIIEG 217

Query: 770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           KL    +D   ++  +     SK P  RP++  +++
Sbjct: 218 KLPPMPKDYSPELGELIATMLSKRPEKRPSVKSILR 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 63.9 bits (155), Expect = 6e-11
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 51/232 (21%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG G  G VYK   + +G++ A+K +      V+  + ++++L+  +  +        H+
Sbjct: 24  VGNGTYGQVYKGRHVKTGQLAAIKVM-----DVTEDEEEEIKLEINMLKKYS-----HHR 73

Query: 593 NIVKLYCYF---------SSLYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAF 640
           NI   Y  F           L+   LV E+   G++ D +       +  DW     I  
Sbjct: 74  NIATYYGAFIKKSPPGHDDQLW---LVMEFCGAGSVTDLVKNTKGNALKEDWIAY--ICR 128

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            + +GLA+LH      +IHRDIK  N+LL  N + K+ DFG++  L    G+ +T     
Sbjct: 129 EILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNT---FI 182

Query: 701 GTYGYLAPE-----------YAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           GT  ++APE           Y Y S      D++S G+  +E+  G  P+ D
Sbjct: 183 GTPYWMAPEVIACDENPDATYDYRS------DIWSLGITAIEMAEGAPPLCD 228

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 67/272 (24%), Positives = 105/272 (38%), Gaps = 59/272 (21%)

Query: 527 AMTEKNK-VGQGGSGTVY---KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
           +M  K K +G G  G V    K+D N+  + A+K L         +D         +K E
Sbjct: 1   SMFVKIKTIGIGAFGEVCLVRKVDTNA--LYAMKTL-------RKADVLMRNQAAHVKAE 51

Query: 583 VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
            + L    ++ +VKLY  F        V +Y+P G++   L +  +  +   R  IA  +
Sbjct: 52  RDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYIA-EL 110

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA------------------- 683
              +  +H       IHRDIK  NIL+D +   K+ DFG+                    
Sbjct: 111 TCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHR 167

Query: 684 ------------------KVLQARGGKDSTTTV---IAGTYGYLAPEYAYSSKATTKCDV 722
                             K L+ R  +     +   + GT  Y+APE    +  T  CD 
Sbjct: 168 QDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDW 227

Query: 723 YSFGVVLMELITGRKPVEDD--FGDNKNIIYW 752
           +S GV+L E++ G+ P   D        +I W
Sbjct: 228 WSVGVILYEMLVGQPPFLADTPAETQLKVINW 259

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 66.0 bits (161), Expect = 7e-11
 Identities = 52/173 (30%), Positives = 76/173 (43%), Gaps = 18/173 (10%)

Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYC--NLL--VYEYMPNGNLWDALHKGLVHLDWPT 634
            + E      + H NIV L     S      LL  V+EY+P   L + L      L    
Sbjct: 25  FRRETALCARLYHPNIVAL---LDSGEAPPGLLFAVFEYVPGRTLREVLAADGA-LPAGE 80

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGG 691
             ++   V   LA  H+     I+HRD+K  NI++    V    KV DFGI  +L     
Sbjct: 81  TGRLMLQVLDALACAHN---QGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRD 137

Query: 692 KDST----TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
            D      TT + GT  Y APE       T   D+Y++G++ +E +TG++ V+
Sbjct: 138 ADVATLTRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECLTGQRVVQ 190

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 63.9 bits (155), Expect = 8e-11
 Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 17/217 (7%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G    V  + L   E +   K+  +       D D +Q +K +  +        H  
Sbjct: 3   IGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASN-----HPF 57

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG--VAQGLAYLHH 651
           +V L+  F +      V EY+  G+L   + +       P  H   +   ++  L YLH 
Sbjct: 58  LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR---QRKLPEEHARFYSAEISLALNYLHE 114

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD     K+ D+G+ K     G    TT+   GT  Y+APE  
Sbjct: 115 ---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG---DTTSTFCGTPNYIAPEIL 168

Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                    D ++ GV++ E++ GR P  D  G + N
Sbjct: 169 RGEDYGFSVDWWALGVLMFEMMAGRSPF-DIVGSSDN 204

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 63.5 bits (154), Expect = 8e-11
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 42/224 (18%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  GTVYK I +  GE V +        + +    +   +D+ L      + ++ H 
Sbjct: 15  LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL-----IMASMDHP 69

Query: 593 NIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHK------GLVHLDWPTRHKIAFGVAQ 644
           ++V+L   C   ++    LV + MP+G L D +H+        + L+W  +      +A+
Sbjct: 70  HLVRLLGVCLSPTIQ---LVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQ------IAK 120

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ-------ARGGKDSTTT 697
           G+ YL    L   +HRD+ + N+L+      K+ DFG+A++L+       A GGK     
Sbjct: 121 GMMYLEERRL---VHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIK- 176

Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
                  ++A E  +  K T + DV+S+GV + EL+T G KP +
Sbjct: 177 -------WMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD 213

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 63.1 bits (153), Expect = 9e-11
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 36/219 (16%)

Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           ++G G  G VYK       V+A  K+   +++    D            E++ L +  H 
Sbjct: 12  ELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELED---------YMVEIDILASCDHP 62

Query: 593 NIVKL---YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP-TRHKIAFGVAQ---G 645
           NIVKL   + Y ++L+   ++ E+   G + DA+   ++ L+ P T  +I     Q    
Sbjct: 63  NIVKLLDAFYYENNLW---ILIEFCAGGAV-DAV---MLELERPLTEPQIRVVCKQTLEA 115

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI-AKVLQARGGKDSTTTVIAGTYG 704
           L YLH    + IIHRD+K+ NIL  ++   K+ADFG+ AK  +    +DS      GT  
Sbjct: 116 LNYLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS----FIGTPY 168

Query: 705 YLAPEYAYSSKATT-----KCDVYSFGVVLMELITGRKP 738
           ++APE      +       K DV+S G+ L+E+     P
Sbjct: 169 WMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPP 207

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 63.7 bits (155), Expect = 9e-11
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 27/222 (12%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G    V  ++L     +   K+  +       D D +Q +K +    ET  N  H  
Sbjct: 3   IGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHV---FETASN--HPF 57

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD----WPTRHK--IAFGVAQGLA 647
           +V L+  F +      V E++  G+L       + H+      P  H    +  ++  L 
Sbjct: 58  LVGLHSCFQTESRLFFVIEFVSGGDL-------MFHMQRQRKLPEEHARFYSAEISLALN 110

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG-GKDSTTTVIAGTYGYL 706
           +LH      II+RD+K  N+LLD     K+ D+G+ K     G     TT+   GT  Y+
Sbjct: 111 FLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCK----EGIRPGDTTSTFCGTPNYI 163

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
           APE           D ++ GV++ E++ GR P  D  G + N
Sbjct: 164 APEILRGEDYGFSVDWWALGVLMFEMMAGRSPF-DIVGMSDN 204

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 64.2 bits (156), Expect = 9e-11
 Identities = 92/336 (27%), Positives = 135/336 (40%), Gaps = 33/336 (9%)

Query: 91  VTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSV 150
           V S      T   I  + P        + +L L  +      +P  L  L  L  L  S 
Sbjct: 20  VLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSG 79

Query: 151 NHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLG 210
              S    E++L L  L  L L  N L   IS  +   T LT L L +N++T   P    
Sbjct: 80  IS-SLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGL 137

Query: 211 QWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN 270
             S L  LDLS+NK+                           LP  L    NL    +S 
Sbjct: 138 LKSNLKELDLSDNKIE-------------------------SLPSPLRNLPNLKNLDLSF 172

Query: 271 NHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIY 330
           N L   +P+ + +L +++ +DLS N  S  +   +     L EL +  N I   + S + 
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLS 229

Query: 331 RAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSN 390
              +L  ++LS+N L   +P  IGNL  L  L L +N+++S   +SL SL +L  LDLS 
Sbjct: 230 NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLRELDLSG 286

Query: 391 NLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIK 426
           N L+  +P     LL   +  +       + L L  
Sbjct: 287 NSLSNALPLIALLLLLLELLLNLLLTLKALELKLNS 322

Length = 394

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 49/228 (21%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G +G V+  +D +  + VAVKK+           TD   +   L+ E++ +  + H 
Sbjct: 13  LGCGSNGLVFSAVDSDCDKRVAVKKI---------VLTDPQSVKHALR-EIKIIRRLDHD 62

Query: 593 NIVKLY-----------------CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR 635
           NIVK+Y                    +S+Y   +V EYM   +L + L +G +       
Sbjct: 63  NIVKVYEVLGPSGSDLTEDVGSLTELNSVY---IVQEYM-ETDLANVLEQGPL----SEE 114

Query: 636 HK--IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVADFGIAKVLQ---AR 689
           H     + + +GL Y+H    + ++HRD+K  N+ ++  +   K+ DFG+A+++    + 
Sbjct: 115 HARLFMYQLLRGLKYIHS---ANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSH 171

Query: 690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKC-DVYSFGVVLMELITGR 736
            G  S   V   T  Y +P    S    TK  D+++ G +  E++TG+
Sbjct: 172 KGYLSEGLV---TKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGK 216

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 19/153 (12%)

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK------IAFGVAQGLA 647
           + +L+  F ++     V EY+  G+L       + H+    + K       A  +A GL 
Sbjct: 63  LTQLHSCFQTMDRLYFVMEYVNGGDL-------MYHIQQVGKFKEPHAVFYAAEIAIGLF 115

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           +LH      II+RD+K  N++LD     K+ADFG+ K     GGK  TT    GT  Y+A
Sbjct: 116 FLHS---KGIIYRDLKLDNVMLDAEGHIKIADFGMCKE-NIFGGK--TTRTFCGTPDYIA 169

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           PE           D ++FGV+L E++ G+ P +
Sbjct: 170 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFD 202

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 67/234 (28%), Positives = 100/234 (42%), Gaps = 52/234 (22%)

Query: 534 VGQGGSGTVYK------IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           +G G  G VY+      +   SG + VAVK L     +  A+D ++ +  K    E   +
Sbjct: 3   LGSGAFGEVYEGTATDILGPGSGPIRVAVKTL-----RKGATDQEKKEFLK----EAHLM 53

Query: 587 GNIRHKNIVKLY--CYFS-SLYCNLLVYEYMPNGNLWDALHKGLVH------LDWPTRHK 637
            N  H NIVKL   C  +   Y   ++ E M  G+L   L    V       L       
Sbjct: 54  SNFNHPNIVKLLGVCLLNEPQY---IIMELMEGGDLLSYLRDARVERFGPPLLTLKELLD 110

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-----KVADFGIAKVL------ 686
           I   VA+G  YL        IHRD+ + N L+           K+ DFG+A+ +      
Sbjct: 111 ICLDVAKGCVYLEQ---MHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYY 167

Query: 687 QARG-GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           +  G G             ++APE     K TT+ DV+SFGV++ E++T G++P
Sbjct: 168 RKEGEGLLPVR--------WMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQP 213

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 35/234 (14%)

Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E + +  + H  +V+LY   +      +V E+M NG L + L +    L       +   
Sbjct: 49  EAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQD 108

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK-VLQARGGKDSTTTVIA 700
           V +G+ YL     +  IHRD+ + N L+      KV+DFG+ + VL      D  T+   
Sbjct: 109 VCEGMEYLER---NSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLD-----DEYTSSSG 160

Query: 701 GTY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
             +   +  PE    SK ++K DV+SFGV++ E+ T G+ P E                 
Sbjct: 161 AKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFE----------------- 203

Query: 758 DTKEGIMEVLDKKLSGS--FRDEM--IQVLRIAIRCTSKSPATRPTMNEVVQLL 807
             K+   EV++    G   +R ++  + V  +   C  + P  RPT  E+++ +
Sbjct: 204 --KKSNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 26/210 (12%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTK--VSASDTDQLQLDKGLKTEVETLGNI 589
           K+G+G   TVYK I   +G++VA+K + S +T+  V  +   +  L KGLK         
Sbjct: 12  KLGEGSYATVYKGISRINGQLVALKVI-SMKTEEGVPFTAIREASLLKGLK--------- 61

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNG-NLWDALHKGLVHLDWPTRHKI-AFGVAQGLA 647
            H NIV L+    +      V+EYM      +   H G +H   P   ++  F + +GLA
Sbjct: 62  -HANIVLLHDIIHTKETLTFVFEYMHTDLAQYMIQHPGGLH---PYNVRLFMFQLLRGLA 117

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           Y+H      I+HRD+K  N+L+    + K+ADFG+A+   A+     T +    T  Y  
Sbjct: 118 YIHG---QHILHRDLKPQNLLISYLGELKLADFGLAR---AKSIPSQTYSSEVVTLWYRP 171

Query: 708 PEYAY-SSKATTKCDVYSFGVVLMELITGR 736
           P+    ++  ++  D++  G + +E++ G+
Sbjct: 172 PDVLLGATDYSSALDIWGAGCIFIEMLQGQ 201

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 82/318 (25%), Positives = 139/318 (43%), Gaps = 68/318 (21%)

Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 2   RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 58

Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HK---GLVHL-D 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK   G  +L +
Sbjct: 59  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 113

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 114 WCVQ------IAKGMNYLEERRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGADEK 164

Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF 743
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +   
Sbjct: 165 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG-- 214

Query: 744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDE----MIQVLRIAIRCTSKSPATRPT 799
                        +   E I  +L+K   G    +     I V  I ++C      +RP 
Sbjct: 215 -------------IPASE-ISSILEK---GERLPQPPICTIDVYMIMVKCWMIDADSRPK 257

Query: 800 MNEVVQLLAEA--DPCRF 815
             E++   ++   DP R+
Sbjct: 258 FRELIIEFSKMARDPQRY 275

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 24/219 (10%)

Query: 532 NKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+GQG  G V+K     + ++VA+KK+  +  K     T        L+ E++ L  ++
Sbjct: 18  AKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPIT-------ALR-EIKILQLLK 69

Query: 591 HKNIVKLY--CYFSSLYCN------LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
           H+N+V L   C   +   N       LV+E+  + +L   L    V        K+   +
Sbjct: 70  HENVVNLIEICRTKATPYNRYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKML 128

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-QARGGKDSTTTVIAG 701
             GL Y+H    + I+HRD+K+ NIL+  +   K+ADFG+A+    ++  K +  T    
Sbjct: 129 LNGLYYIH---RNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVV 185

Query: 702 TYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPV 739
           T  Y  PE     +      D++  G ++ E+ T R P+
Sbjct: 186 TLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWT-RSPI 223

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 50/154 (32%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           L N++H  +V L+  F +      V +Y+  G L+  L +    L+ P     A  VA  
Sbjct: 50  LKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLE-PRARFYAAEVASA 108

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK-DSTTTVIAGTYG 704
           + YLH      II+RD+K  NILLD      + DFG+ K     G + + TT+   GT  
Sbjct: 109 IGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCK----EGVEPEETTSTFCGTPE 161

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           YLAPE           D +  G VL E++ G  P
Sbjct: 162 YLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 65/229 (28%), Positives = 101/229 (44%), Gaps = 37/229 (16%)

Query: 526 EAMTEKNKVGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           E +  ++ +G+G  G V +  I  +  ++ A  K+     K  AS+ D     +    E+
Sbjct: 2   EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKM----LKEFASENDH----RDFAGEL 53

Query: 584 ETLGNI-RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT---RH--- 636
           E L  +  H NI+ L     +     +  EY P GNL D L K  V    P     H   
Sbjct: 54  EVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTA 113

Query: 637 ---------KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ 687
                    + A  VA G+ YL        IHRD+ + N+L+  N   K+ADFG+++   
Sbjct: 114 STLTSQQLLQFASDVATGMQYLSE---KQFIHRDLAARNVLVGENLASKIADFGLSR--- 167

Query: 688 ARGGKDSTTTVIAGTYG--YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
              G++       G     ++A E    S  TTK DV+SFGV+L E+++
Sbjct: 168 ---GEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVS 213

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 25/209 (11%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKL--WSQRTKVSASDTDQLQLDKGLKTE--VETLGN 588
           VG+G  G V K     + E+VA+KK     +  +V  +   +L++ + LK E  VE    
Sbjct: 9   VGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEA 68

Query: 589 IRHKNIVKLYCYFSSLYCNLL-VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
            R +   KLY  F  +  N+L + E MPNG   +               K+   + Q + 
Sbjct: 69  FRRRG--KLYLVFEYVEKNMLELLEEMPNGVPPE---------------KVRSYIYQLIK 111

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            +H    + I+HRDIK  N+L+  N   K+ DFG A+ L    G ++  T    T  Y +
Sbjct: 112 AIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSE--GSNANYTEYVATRWYRS 169

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGR 736
           PE    +      D++S G +L EL  G+
Sbjct: 170 PELLLGAPYGKAVDMWSVGCILGELSDGQ 198

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 78/305 (25%), Positives = 125/305 (40%), Gaps = 58/305 (19%)

Query: 526 EAMTEKNKVGQGGSGTVYK-----IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGL 579
           +++T    +G G  G VY+      D ++ E+ VAVK L       S S+ D+       
Sbjct: 6   DSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPE-----SCSEQDESDFLM-- 58

Query: 580 KTEVETLGNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH- 636
             E   +    H+NIV+L    +        ++ E M  G+L   L +     + P+   
Sbjct: 59  --EALIMSKFNHQNIVRLIGVSFERLPR--FILLELMAGGDLKSFLRENRPRPERPSSLT 114

Query: 637 -----KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---NYQPKVADFGIAKVLQA 688
                  A  VA+G  YL     +  IHRDI + N LL         K+ADFG+A+ +  
Sbjct: 115 MKDLLFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYR 171

Query: 689 -----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                +GG+      I     ++ PE       T+K DV+SFGV+L E+ + G  P    
Sbjct: 172 ASYYRKGGR--AMLPIK----WMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGR 225

Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
              N+ ++ +V     T  G ++   K   G        V RI   C   +P  RP    
Sbjct: 226 --TNQEVMEFV-----TGGGRLDP-PKGCPGP-------VYRIMTDCWQHTPEDRPNFAT 270

Query: 803 VVQLL 807
           +++ +
Sbjct: 271 ILERI 275

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V ++     + +   K   +   VS S+            E   L  +    
Sbjct: 1   IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTL------AERTVLAQVNCPF 54

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           IV L   F S     LV  ++  G L+  L + G   L   +R +  F  A+ L  L + 
Sbjct: 55  IVPLKFSFQSPEKLYLVLAFINGGELFHHLQREGRFDL---SRAR--FYTAELLCALENL 109

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +I+RD+K  NILLD      + DFG+ K+       D  T    GT  YLAPE   
Sbjct: 110 HKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMK---DDDKTNTFCGTPEYLAPELLL 166

Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDD 742
               T   D ++ GV+L E++TG  P  D+
Sbjct: 167 GHGYTKAVDWWTLGVLLYEMLTGLPPFYDE 196

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 63.9 bits (155), Expect = 2e-10
 Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 32/234 (13%)

Query: 580 KTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLV-HLDWPTRHKI 638
           ++E+  L    H  IVK +  F S    LL+ EY   G+L   + + L  HL +   +++
Sbjct: 113 RSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPF-QEYEV 171

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
                Q +  L       ++HRD+KS NI L      K+ DFG +K        D  ++ 
Sbjct: 172 GLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASS- 230

Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  YLAPE     + + K D++S GV+L EL+T  +P +   G ++           
Sbjct: 231 FCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFK---GPSQR---------- 277

Query: 759 TKEGIMEVLDKKLSGSF-------RDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
                 E++ + L G +          M  +L   +   SK+PA RPT  +++ 
Sbjct: 278 ------EIMQQVLYGKYDPFPCPVSSGMKALLDPLL---SKNPALRPTTQQLLH 322

Length = 478

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G  G V+ +   SG      KL++ +    A+   + +  +  +TE + L +IR   
Sbjct: 8   LGTGAYGKVFLVRKVSGHDSG--KLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSP 65

Query: 594 -IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            +V L+  F +     L+ +Y+  G L+  L       +     ++     + +  L H 
Sbjct: 66  FLVTLHYAFQTDTKLHLILDYINGGELFTHL----SQRERFKEQEVQIYSGEIVLALEHL 121

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               II+RDIK  NILLD N    + DFG++K       + + +    GT  Y+AP+   
Sbjct: 122 HKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYS--FCGTIEYMAPDIVR 179

Query: 713 SSKA--TTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
                     D +S GV++ EL+TG  P   D   N
Sbjct: 180 GGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKN 215

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 55/277 (19%)

Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 53  VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 103

Query: 612 EYMPNGNLWDALH----KGLVHLDWPTRHKI-----------AFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +   PT+              A+ VA+G+ YL       
Sbjct: 104 EYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS---KK 160

Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 161 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV-KWMAPEALFDRIY 219

Query: 717 TTKCDVYSFGVVLMELIT--GRK----PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV+L E+ T  G      PVE+ F            K+  KEG    +DK 
Sbjct: 220 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF------------KL-LKEG--HRMDKP 264

Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 265 SNCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 296

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 84/314 (26%), Positives = 134/314 (42%), Gaps = 72/314 (22%)

Query: 529 TEKNKV---GQGGSGTVYK-IDLNSGEVVAVK---KLWSQRTKVSASDTDQLQLDKGLKT 581
           TE  KV   G G  GTVYK I +  GE V +    K+  + T   A        +K +  
Sbjct: 7   TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKA--------NKEILD 58

Query: 582 EVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWP 633
           E   +  +    + +L   C  S++    LV + MP G L D +  +K  +     L+W 
Sbjct: 59  EAYVMAGVGSPYVCRLLGICLTSTVQ---LVTQLMPYGCLLDYVRENKDRIGSQDLLNWC 115

Query: 634 TRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL------- 686
            +      +A+G++YL    L   +HRD+ + N+L+      K+ DFG+A++L       
Sbjct: 116 VQ------IAKGMSYLEEVRL---VHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEY 166

Query: 687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGD 745
            A GGK            ++A E     + T + DV+S+GV + EL+T G KP +     
Sbjct: 167 HADGGKVPIK--------WMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDG---- 214

Query: 746 NKNIIYWVSIKVDTKEGIMEVLDK--KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV 803
                      +  +E I ++L+K  +L        I V  I ++C       RP   E+
Sbjct: 215 -----------IPARE-IPDLLEKGERLPQP-PICTIDVYMIMVKCWMIDSECRPRFREL 261

Query: 804 VQLLAEA--DPCRF 815
           V   +    DP RF
Sbjct: 262 VDEFSRMARDPSRF 275

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 68/252 (26%), Positives = 104/252 (41%), Gaps = 69/252 (27%)

Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG----LKTEVETL 586
           +G+G  G V    K D  +G + A+KKL         S+     L+K     ++ E + L
Sbjct: 9   IGRGAFGEVRLVQKKD--TGHIYAMKKL-------RKSE----MLEKEQVAHVRAERDIL 55

Query: 587 GNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
               +  +VKLY  F   + LY   L+ EY+P G++   L K     D  T  +  F +A
Sbjct: 56  AEADNPWVVKLYYSFQDENYLY---LIMEYLPGGDMMTLLMK----KDTFTEEETRFYIA 108

Query: 644 QGLAYLH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG----------- 690
           + +  +   H L    IHRDIK  N+LLD     K++DFG+   L+              
Sbjct: 109 ETILAIDSIHKL--GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHA 166

Query: 691 --------------GKDSTTT------VIA----GTYGYLAPEYAYSSKATTKCDVYSFG 726
                          K    T       +A    GT  Y+APE    +    +CD +S G
Sbjct: 167 LPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLG 226

Query: 727 VVLMELITGRKP 738
           V++ E++ G  P
Sbjct: 227 VIMYEMLVGYPP 238

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 51/159 (32%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 44  TESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA- 102

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVI 699
            +   L YLH      +++RDIK  N++LD +   K+ DFG+ K     G  D +T    
Sbjct: 103 EIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCK----EGISDGATMKTF 155

Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 156 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 194

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 41/227 (18%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           VG G  G VYK   + +G++ A+K +      V+  + +++      K E+  L     H
Sbjct: 14  VGNGTYGQVYKGRHVKTGQLAAIKVM-----DVTGDEEEEI------KQEINMLKKYSHH 62

Query: 592 KNIVKLYCYF---------SSLYCNLLVYEYMPNGNLWDALH--KG-LVHLDWPTRHKIA 639
           +NI   Y  F           L+   LV E+   G++ D +   KG  +  +W     I 
Sbjct: 63  RNIATYYGAFIKKNPPGMDDQLW---LVMEFCGAGSVTDLIKNTKGNTLKEEWIAY--IC 117

Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
             + +GL++LH      +IHRDIK  N+LL  N + K+ DFG++  L    G+ +T    
Sbjct: 118 REILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNT---F 171

Query: 700 AGTYGYLAPEYAYSSK---ATT--KCDVYSFGVVLMELITGRKPVED 741
            GT  ++APE     +   AT   K D++S G+  +E+  G  P+ D
Sbjct: 172 IGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCD 218

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 62.0 bits (150), Expect = 3e-10
 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 44  TENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGA- 102

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVI 699
            +   L YLH      +++RD+K  N++LD +   K+ DFG+ K     G KD +T    
Sbjct: 103 EIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCK----EGIKDGATMKTF 156

Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 157 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 195

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 12/176 (6%)

Query: 571 DQLQLDKGLK----TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKG 626
           D + L  G K     E   L N+ H +++++     S     +V  +  + +L+  L K 
Sbjct: 92  DPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHY-SSDLYTYLTKR 150

Query: 627 LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
              L       I   + +GL YLH      IIHRD+K+ NI ++   Q  + D G A+  
Sbjct: 151 SRPLPIDQALIIEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAAQFP 207

Query: 687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
                       +AGT    APE     K  +K D++S G+VL E++     + +D
Sbjct: 208 VV----APAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFED 259

Length = 357

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 28/233 (12%)

Query: 526 EAMTEKNKVGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E +T    +G+G  G VY+   +   + ++ VAVK       K   S + +   +K L+ 
Sbjct: 6   EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKT-----CKNCTSPSVR---EKFLQ- 56

Query: 582 EVETLGNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIA 639
           E   +    H +IVKL      + ++   +V E  P G L   L      LD  +    +
Sbjct: 57  EAYIMRQFDHPHIVKLIGVITENPVW---IVMELAPLGELRSYLQVNKYSLDLASLILYS 113

Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
           + ++  LAYL        +HRDI + N+L+      K+ DFG+++ L+      ++   +
Sbjct: 114 YQLSTALAYLES---KRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKL 170

Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVEDDFG-DNKNII 750
                ++APE     + T+  DV+ FGV + E L+ G KP     G  N ++I
Sbjct: 171 P--IKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPF---QGVKNNDVI 218

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 23/233 (9%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G VY     ++G++ A+K L  +R K+   +T  L L++ +   + + G+    
Sbjct: 2   IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGET--LALNERIMLSLVSTGDCPF- 58

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            IV +   F +      + + M  G+L   L +  V  +   R   A  +  GL ++H+ 
Sbjct: 59  -IVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRF-YATEIILGLEHMHNR 116

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY-- 710
               +++RD+K  NILLD +   +++D G+A     +    S      GT+GY+APE   
Sbjct: 117 F---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV-----GTHGYMAPEVLQ 168

Query: 711 ---AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK 760
              AY S A    D +S G +L +L+ G  P       +K+ I  +++ V+ +
Sbjct: 169 KGTAYDSSA----DWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVE 217

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 74/272 (27%), Positives = 118/272 (43%), Gaps = 40/272 (14%)

Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G V    +  +G++ A KKL  +R K    +   L        E + L  +  +
Sbjct: 8   LGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALN-------EKQILEKVNSR 60

Query: 593 NIVKL-YCYFSS-LYCNLLVYEYMPNGNLWDALHKGLVHLDWP--TRHKIAFGVAQ---G 645
            +V L Y Y +    C  LV   M  G+L    H  + ++  P     +  F  A+   G
Sbjct: 61  FVVSLAYAYETKDALC--LVLTLMNGGDL--KFH--IYNMGNPGFDEERAVFYAAEITCG 114

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  LH      I++RD+K  NILLD     +++D G+A  ++   G+     V  GT GY
Sbjct: 115 LEDLHR---ERIVYRDLKPENILLDDYGHIRISDLGLA--VEIPEGETIRGRV--GTVGY 167

Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           +APE   + + T   D +  G ++ E+I G+ P    F   K  +    ++   KE   E
Sbjct: 168 MAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSP----FRQRKEKVKREEVERRVKE-DQE 222

Query: 766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR 797
              +K S + R    Q+L       +K P  R
Sbjct: 223 EYSEKFSEAARSICRQLL-------TKDPGFR 247

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 67/296 (22%), Positives = 125/296 (42%), Gaps = 51/296 (17%)

Query: 534 VGQGGSGTVYKIDLNSGEV----VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G+V +  L+  +     VAVK +     K+      +++      +E   + + 
Sbjct: 7   LGEGEFGSVMEGQLSQDDGSQLKVAVKTM-----KLDIHTYSEIE---EFLSEAACMKDF 58

Query: 590 RHKNIVKLY--CYFSS----LYCNLLVYEYMPNGNL-----WDALHKGLVHLDWPTRHKI 638
            H N++KL   C+ +S    +   +++  +M +G+L     +  L      L   T  K 
Sbjct: 59  DHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKF 118

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA----RGGKDS 694
              +A G+ YL +      IHRD+ + N +L  +    VADFG++K + +    R G+ +
Sbjct: 119 MVDIALGMEYLSN---RNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIA 175

Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV 753
              V      ++A E       T+K DV++FGV + E+ T G+ P     G   + IY  
Sbjct: 176 KMPV-----KWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYP---GVENHEIYDY 227

Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
               +  +   + LD+            +  +   C    P  RPT  ++ ++L  
Sbjct: 228 LRHGNRLKQPEDCLDE------------LYDLMYSCWRADPKDRPTFTKLREVLEN 271

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 61.6 bits (149), Expect = 4e-10
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 19/158 (12%)

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK------IAFGVAQGLA 647
           + +L+  F ++     V EY+  G+L       +  +    R K       A  +A GL 
Sbjct: 63  LTQLHSCFQTMDRLYFVMEYVNGGDL-------MYQIQQVGRFKEPHAVFYAAEIAIGLF 115

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           +LH      II+RD+K  N++LD     K+ADFG+ K     G    TT    GT  Y+A
Sbjct: 116 FLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDG---VTTKTFCGTPDYIA 169

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD 745
           PE           D ++FGV+L E++ G+ P E +  D
Sbjct: 170 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED 207

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 5e-10
 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 304 TVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNL-KKLNLL 362
           T  N+  +  + +    ISG I S I+R   +  I+LS+N LSGPIP  I      L  L
Sbjct: 64  TCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL 123

Query: 363 MLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLP-NSINFSNNRLSGPIP 421
            L +N    SIP    S+ +L  LDLSNN+L+G IP  +        ++   N L G IP
Sbjct: 124 NLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 422 LSL 424
            SL
Sbjct: 182 NSL 184

Length = 968

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 63.3 bits (154), Expect = 5e-10
 Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 42/235 (17%)

Query: 533 KVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            +G+GG G VY   D      VA+KK+   R  +S    +   L K    E +   ++ H
Sbjct: 9   LIGKGGMGEVYLAYDPVCSRRVALKKI---REDLS----ENPLLKKRFLREAKIAADLIH 61

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMP--NG--------NLW--DALHKGL-VHLDWPTRHKI 638
             IV +Y   S       VY  MP   G        ++W  ++L K L           I
Sbjct: 62  PGIVPVYSICSD---GDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSI 118

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA---------- 688
              +   + Y+H      ++HRD+K  NILL +  +  + D+G A   +           
Sbjct: 119 FHKICATIEYVHS---KGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDV 175

Query: 689 --RGGKDSTTTV---IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
             R    S+ T+   I GT  Y+APE      A+   D+Y+ GV+L +++T   P
Sbjct: 176 DERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFP 230

Length = 932

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 62.0 bits (150), Expect = 5e-10
 Identities = 60/213 (28%), Positives = 88/213 (41%), Gaps = 17/213 (7%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  +   S   V   KL S+   +  SD+           E + +       
Sbjct: 51  IGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDS------AFFWEERDIMAFANSPW 104

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +V+L+  F       +V EYMP G+L + +    V   W   +     V   L  +H   
Sbjct: 105 VVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAE--VVLALDAIHS-- 160

Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
               IHRD+K  N+LLD +   K+ADFG    +   G     T V  GT  Y++PE   S
Sbjct: 161 -MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAV--GTPDYISPEVLKS 217

Query: 714 SKAT----TKCDVYSFGVVLMELITGRKPVEDD 742
                    +CD +S GV L E++ G  P   D
Sbjct: 218 QGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD 250

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 61.2 bits (148), Expect = 5e-10
 Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 36/223 (16%)

Query: 525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT-- 581
           LE   + +K+G+G   TVYK     +  +VA+K++             +L+ ++G     
Sbjct: 5   LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEI-------------RLEHEEGAPCTA 51

Query: 582 --EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK--GLVHLDWPTRHK 637
             EV  L +++H NIV L+    +     LV+EY+ + +L   L      +++     H 
Sbjct: 52  IREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYL-DKDLKQYLDDCGNSINM-----HN 105

Query: 638 IA---FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
           +    F + +GL Y H      ++HRD+K  N+L++   + K+ADFG+A+   A+     
Sbjct: 106 VKLFLFQLLRGLNYCHR---RKVLHRDLKPQNLLINERGELKLADFGLAR---AKSIPTK 159

Query: 695 TTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGR 736
           T +    T  Y  P+    S+  +T+ D++  G +  E+ TGR
Sbjct: 160 TYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGR 202

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 61.1 bits (148), Expect = 6e-10
 Identities = 70/285 (24%), Positives = 119/285 (41%), Gaps = 62/285 (21%)

Query: 552 VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVY 611
           +VAVK L +  TK + +D            E++ +  +++ NI++L     S     ++ 
Sbjct: 46  LVAVKMLRADVTKTARND---------FLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMIT 96

Query: 612 EYMPNGNLWDALHKGLVHLDWPTRHKI-----------AFGVAQGLAYLHHGLLSPIIHR 660
           EYM NG+L   L +  +   +   + I           A  +A G+ YL        +HR
Sbjct: 97  EYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLAS---LNFVHR 153

Query: 661 DIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG----TYGYLAPEYAYSSKA 716
           D+ + N L+  +Y  K+ADFG+++ L +          I G       ++A E     K 
Sbjct: 154 DLATRNCLVGNHYTIKIADFGMSRNLYS-----GDYYRIQGRAVLPIRWMAWESILLGKF 208

Query: 717 TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR 776
           TT  DV++FGV L E+ T  K  E  +             + + E ++E         FR
Sbjct: 209 TTASDVWAFGVTLWEMFTLCK--EQPY------------SLLSDEQVIE----NTGEFFR 250

Query: 777 DEMIQ------------VLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           ++  Q            V ++ +RC S+    RPT N++   L E
Sbjct: 251 NQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE 295

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 67/259 (25%), Positives = 116/259 (44%), Gaps = 37/259 (14%)

Query: 534 VGQGGSGTVY---KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G+GG G VY   K D  +G++ A+K L  +R K+   +T  L L++ +   + + G+  
Sbjct: 2   IGRGGFGEVYGCRKAD--TGKMYAMKCLDKKRIKMKQGET--LALNERIMLSLVSTGDCP 57

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
              IV +   F +      + + M  G+L    H  L      +  ++ F  A+ +  L 
Sbjct: 58  F--IVCMSYAFHTPDKLSFILDLMNGGDL----HYHLSQHGVFSEAEMRFYAAEIILGLE 111

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
           H     +++RD+K  NILLD +   +++D G+A     +    S      GT+GY+APE 
Sbjct: 112 HMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV-----GTHGYMAPEV 166

Query: 711 -----AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
                AY S A    D +S G +L +L+ G  P       +K+ I          + +  
Sbjct: 167 LQKGVAYDSSA----DWFSLGCMLFKLLRGHSPFRQHKTKDKHEI----------DRMTL 212

Query: 766 VLDKKLSGSFRDEMIQVLR 784
            +  +L  SF  E+  +L 
Sbjct: 213 TMAVELPDSFSPELRSLLE 231

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 61.6 bits (149), Expect = 6e-10
 Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 32/222 (14%)

Query: 524 ILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
           +L+   +   +G G  G V    D   G  VAVKKL       S    +Q    +  + E
Sbjct: 19  VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKL-------SRPFQNQTHAKRAYR-E 70

Query: 583 VETLGNIRHKNIVKLYCYFS---------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
           +  L  + HKNI+ L   F+          +Y   LV E M + NL   +H  L H    
Sbjct: 71  LVLLKCVNHKNIISLLNVFTPQKSLEEFQDVY---LVMELM-DANLCQVIHMELDH---- 122

Query: 634 TRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD 693
              ++++ + Q L  + H   + IIHRD+K +NI++  +   K+ DFG+A+        +
Sbjct: 123 --ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----ACTN 176

Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITG 735
              T    T  Y APE           D++S G ++ EL+ G
Sbjct: 177 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKG 218

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 60.9 bits (147), Expect = 7e-10
 Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 30/211 (14%)

Query: 533 KVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK----TEVETLG 587
           K+G+G   TVYK     +G++VA+K +             +LQ ++G       E   L 
Sbjct: 12  KLGEGSYATVYKGKSKVNGKLVALKVI-------------RLQEEEGTPFTAIREASLLK 58

Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQG 645
            ++H NIV L+    +     LV+EY+ + +L   +  H G +H +        F + +G
Sbjct: 59  GLKHANIVLLHDIIHTKETLTLVFEYV-HTDLCQYMDKHPGGLHPE--NVKLFLFQLLRG 115

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L+Y+H      I+HRD+K  N+L+    + K+ADFG+A+         S   V   T  Y
Sbjct: 116 LSYIHQRY---ILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVV---TLWY 169

Query: 706 LAPEYAYSSKATTKC-DVYSFGVVLMELITG 735
             P+    S   + C D++  G + +E+I G
Sbjct: 170 RPPDVLLGSTEYSTCLDMWGVGCIFVEMIQG 200

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 60.1 bits (145), Expect = 8e-10
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 534 VGQGGSGTVYKIDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI- 589
           +G+G  G V K  +    +    A+K++     K  AS  D     +    E+E L  + 
Sbjct: 3   IGEGNFGQVLKARIKKDGLRMDAAIKRM-----KEYASKDDH----RDFAGELEVLCKLG 53

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP-------------TRH 636
            H NI+ L           L  EY P+GNL D L K  V    P             ++ 
Sbjct: 54  HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 113

Query: 637 KIAFG--VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
            + F   VA+G+ YL        IHRD+ + NIL+  NY  K+ADFG+++      G++ 
Sbjct: 114 LLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSR------GQEV 164

Query: 695 TTTVIAGTYG--YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
                 G     ++A E    S  TT  DV+S+GV+L E+++
Sbjct: 165 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 206

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 42/226 (18%)

Query: 525 LEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK--- 580
           LE   + +K+G+G   TVYK     +G++VA+K++             +L+ ++G     
Sbjct: 4   LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEI-------------RLEHEEGAPFTA 50

Query: 581 -TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDW------ 632
             E   L +++H NIV L+    +     LV+EY+            L  ++D       
Sbjct: 51  IREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYL---------DTDLKQYMDDCGGGLS 101

Query: 633 PTRHKI-AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
               ++  F + +GLAY H      ++HRD+K  N+L+    + K+ADFG+A+       
Sbjct: 102 MHNVRLFLFQLLRGLAYCHQ---RRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK 158

Query: 692 KDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGR 736
             S   V   T  Y  P+    S++ +T  D++  G +  E+ TGR
Sbjct: 159 TYSNEVV---TLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGR 201

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 62  SSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQL 121
           + I +L  L+ + L+  ++ G IP S+G++TSL  L+L+ N   G IP  +G L +LR L
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495

Query: 122 ELYYNQQLAGTIPEELG 138
            L  N  L+G +P  LG
Sbjct: 496 NLNGN-SLSGRVPAALG 511

Length = 623

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 61.2 bits (148), Expect = 1e-09
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 48/224 (21%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           N +G G  G VY+ I +++ E VA+KK+              LQ  +    E+  + N+ 
Sbjct: 72  NIIGNGSFGVVYEAICIDTSEKVAIKKV--------------LQDPQYKNRELLIMKNLN 117

Query: 591 HKNIVKLYCYF---------SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI--- 638
           H NI+ L  Y+          +++ N+ V E++P       +HK + H      H +   
Sbjct: 118 HINIIFLKDYYYTECFKKNEKNIFLNV-VMEFIPQ-----TVHKYMKHYA-RNNHALPLF 170

Query: 639 -----AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARGGK 692
                ++ + + LAY+H      I HRD+K  N+L+D N +  K+ DFG AK L    G+
Sbjct: 171 LVKLYSYQLCRALAYIHSKF---ICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLL--AGQ 225

Query: 693 DSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITG 735
            S + + +  Y   APE    ++  TT  D++S G ++ E+I G
Sbjct: 226 RSVSYICSRFY--RAPELMLGATNYTTHIDLWSLGCIIAEMILG 267

Length = 440

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 68/296 (22%), Positives = 125/296 (42%), Gaps = 57/296 (19%)

Query: 535 GQGGSGTVYKIDLNSG-EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+    T +++   +G   VAVK L     K +AS ++     + L +E   L  + H +
Sbjct: 14  GKVVKATAFRLKGRAGYTTVAVKML-----KENASSSEL----RDLLSEFNLLKQVNHPH 64

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDAL---------------HKGLVHLDWPTRHKI 638
           ++KLY   S     LL+ EY   G+L   L               ++   +LD P    +
Sbjct: 65  VIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERAL 124

Query: 639 AFG--------VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
             G        +++G+ YL    L   +HRD+ + N+L+    + K++DFG+++ +    
Sbjct: 125 TMGDLISFAWQISRGMQYLAEMKL---VHRDLAARNVLVAEGRKMKISDFGLSRDVYE-- 179

Query: 691 GKDSTTTVIAG--TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNK 747
            +DS      G     ++A E  +    TT+ DV+SFGV+L E++T G  P      +  
Sbjct: 180 -EDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERL 238

Query: 748 NIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV 803
             +     +++  E   E               ++  + + C  + P  RPT  ++
Sbjct: 239 FNLLKTGYRMERPENCSE---------------EMYNLMLTCWKQEPDKRPTFADI 279

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%)

Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE 612
           VA+  L     +   SD  +     G   E  TLG   H NIV+L    +     ++V E
Sbjct: 36  VAIHTL-----RAGCSDKQRR----GFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTE 86

Query: 613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN 672
           YM NG L   L K    L       +  G+A G+ YL        +H+ + +  +L++ +
Sbjct: 87  YMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSE---MGYVHKGLAAHKVLVNSD 143

Query: 673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYG-----YLAPEYAYSSKATTKCDVYSFGV 727
              K++ F        R  +D +  +     G     + APE       ++  DV+SFG+
Sbjct: 144 LVCKISGFR-------RLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGI 196

Query: 728 VLMELIT-GRKPVED 741
           V+ E+++ G +P  D
Sbjct: 197 VMWEVMSYGERPYWD 211

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 586 LGNIRHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
           L N++H  +V L+  F +   LY    V +Y+  G L+  L +     +   R   A  +
Sbjct: 50  LKNVKHPFLVGLHYSFQTADKLY---FVLDYVNGGELFFHLQRERSFPEPRARFYAA-EI 105

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           A  L YLH      II+RD+K  NILLD      + DFG+ K          TT+   GT
Sbjct: 106 ASALGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEH---SKTTSTFCGT 159

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
             YLAPE           D +  G VL E++ G  P
Sbjct: 160 PEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 16/210 (7%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  + +   E +   K+ ++   +  ++T         + E   L N   + 
Sbjct: 9   IGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAET------ACFREERNVLVNGDCQW 62

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I  L+  F       LV +Y   G+L   L K     D        F +A+ +  +H   
Sbjct: 63  ITTLHYAFQDENYLYLVMDYYVGGDLLTLLSK---FEDRLPEDMARFYIAEMVLAIHSIH 119

Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
               +HRDIK  N+LLD+N   ++ADFG    +   G   S+  V  GT  Y++PE   +
Sbjct: 120 QLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAV--GTPDYISPEILQA 177

Query: 714 -----SKATTKCDVYSFGVVLMELITGRKP 738
                 K   +CD +S GV + E++ G  P
Sbjct: 178 MEDGMGKYGPECDWWSLGVCMYEMLYGETP 207

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           + +L+  F ++     V EY+  G+L   + + +     P     A  ++ GL +LH   
Sbjct: 63  LTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQ-VGKFKEPQAVFYAAEISVGLFFLHR-- 119

Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              II+RD+K  N++LD     K+ADFG+ K     G    TT    GT  Y+APE    
Sbjct: 120 -RGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDG---VTTRTFCGTPDYIAPEIIAY 175

Query: 714 SKATTKCDVYSFGVVLMELITGRKPVE 740
                  D +++GV+L E++ G+ P +
Sbjct: 176 QPYGKSVDWWAYGVLLYEMLAGQPPFD 202

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 25/79 (31%), Positives = 49/79 (62%)

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARN 310
           G +P+ +++ ++L    +S N + G+IP  + S+  + ++DLSYNSF+G I  ++G   +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 311 LSELFMQRNQISGFIPSEI 329
           L  L +  N +SG +P+ +
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           L N++H  +V L+  F +      V +++  G L+  L +     +   R   A  +A  
Sbjct: 50  LKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYAA-EIASA 108

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK--VLQARGGKDSTTTVIAGTY 703
           L YLH      I++RD+K  NILLD      + DFG+ K  + Q+      TTT   GT 
Sbjct: 109 LGYLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQS-----DTTTTFCGTP 160

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            YLAPE           D +  G VL E++ G  P
Sbjct: 161 EYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 39/221 (17%)

Query: 533 KVGQGGSGTVYK--IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           ++G G  G V K    +   ++ VA+K L ++  K   S  D++        E E +  +
Sbjct: 2   ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEK---SVRDEMM------REAEIMHQL 52

Query: 590 RHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLV-HLDWPTRHKIA---FGVA 643
            +  IV++   C   +L   +LV E    G     L+K L    D  T   +      V+
Sbjct: 53  DNPYIVRMIGVCEAEAL---MLVMEMASGG----PLNKFLSGKKDEITVSNVVELMHQVS 105

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            G+ YL        +HRD+ + N+LL   +  K++DFG++K L   G  DS     A + 
Sbjct: 106 MGMKYLEG---KNFVHRDLAARNVLLVNQHYAKISDFGLSKAL---GADDSYYK--ARSA 157

Query: 704 G-----YLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           G     + APE     K +++ DV+S+G+ + E  + G+KP
Sbjct: 158 GKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKP 198

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 70/269 (26%), Positives = 114/269 (42%), Gaps = 34/269 (12%)

Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G V    +  +G++ A KKL  +R K    +   L        E   L  +  +
Sbjct: 8   LGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALN-------EKRILEKVNSR 60

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNL-WDALHKGLVHLDWPTRHKIAFGVAQ---GLAY 648
            +V L   + +     LV   M  G+L +   + G    D     +  F  A+   GL  
Sbjct: 61  FVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFD---EQRAIFYAAELCCGLED 117

Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           L       I++RD+K  NILLD     +++D G+A  +Q   G+     V  GT GY+AP
Sbjct: 118 LQR---ERIVYRDLKPENILLDDRGHIRISDLGLA--VQIPEGETVRGRV--GTVGYMAP 170

Query: 709 EYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD 768
           E   + K T   D +  G ++ E+I G+ P    F   K  +    +    KE   E  +
Sbjct: 171 EVINNEKYTFSPDWWGLGCLIYEMIQGQSP----FRKRKERVKREEVDRRVKEDQEEYSE 226

Query: 769 KKLSGSFRDEMIQVLRIAIRCTSKSPATR 797
           K     F ++   + R+ +   +K+P  R
Sbjct: 227 K-----FSEDAKSICRMLL---TKNPKER 247

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 49/239 (20%)

Query: 525 LEAMTEKNKVGQGGSGTVYKIDLNSGE-VVAVKKLWSQRTKVSASDTDQLQLDKGLKT-- 581
           +E   +  K+G+G   TV+K      E +VA+K++             +L+ ++G     
Sbjct: 5   METYIKLEKLGEGTYATVFKGRSKLTENLVALKEI-------------RLEHEEGAPCTA 51

Query: 582 --EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPN---------GNLWDALHKGLVHL 630
             EV  L +++H NIV L+    +     LV+EY+           GN+  ++H   + L
Sbjct: 52  IREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNIM-SMHNVKIFL 110

Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
                    + + +GLAY H      ++HRD+K  N+L++   + K+ADFG+A+   A+ 
Sbjct: 111 ---------YQILRGLAYCHR---RKVLHRDLKPQNLLINERGELKLADFGLAR---AKS 155

Query: 691 GKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGR-----KPVEDDF 743
               T +    T  Y  P+    SS+ +T+ D++  G +  E+ +GR       VED+ 
Sbjct: 156 VPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDEL 214

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 170 LQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPL 229
           L L N  L G I + I+    L  ++L  NS+ G +P  LG  + L VLDLS N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 230 PAKVCSRGKLQYFLVLQNMFSGVLPDSL-ARCKNLLRFRVSNNHLEGSIPEGILSLPHVS 288
           P  +     L+   +  N  SG +P +L  R  +   F  ++N     IP      PH+S
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLS 542

Query: 289 I 289
           +
Sbjct: 543 V 543

Length = 623

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 58.9 bits (142), Expect = 4e-09
 Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 16/210 (7%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  + L + + V   K+ ++   +  ++T         + E + L N  ++ 
Sbjct: 9   IGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAET------ACFREERDVLVNGDNQW 62

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I  L+  F       LV +Y   G+L   L K     D        F +A+ +  +    
Sbjct: 63  ITTLHYAFQDENNLYLVMDYYVGGDLLTLLSK---FEDRLPEDMARFYLAEMVIAIDSVH 119

Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
               +HRDIK  NIL+D+N   ++ADFG    L   G   S+  V  GT  Y++PE   +
Sbjct: 120 QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAV--GTPDYISPEILQA 177

Query: 714 -----SKATTKCDVYSFGVVLMELITGRKP 738
                 K   +CD +S GV + E++ G  P
Sbjct: 178 MEDGKGKYGPECDWWSLGVCMYEMLYGETP 207

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 58.9 bits (142), Expect = 4e-09
 Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 27/176 (15%)

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +F VA+G+ +L        IHRD+ + NILL  N   K+ DFG+A+ +     KD    V
Sbjct: 180 SFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIY----KDP-DYV 231

Query: 699 IAGT----YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV 753
             G+      ++APE  +    TT+ DV+SFGV+L E+ + G  P             + 
Sbjct: 232 RKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASP-------------YP 278

Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            ++++ +E    + D     +  +   ++ RI + C    P  RPT + +V++L +
Sbjct: 279 GVQIN-EEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALVEILGD 333

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 21/176 (11%)

Query: 580 KTEVETLGNIRHKN-IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR 635
           +TE + L  +R    +V L+  F   + L+   L+ +Y+  G L+  L+      +  T 
Sbjct: 52  RTERQVLEAVRRCPFLVTLHYAFQTDTKLH---LILDYVNGGELFTHLY----QREHFTE 104

Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
            ++   +A+ +  L H     II+RDIK  NILLD      + DFG++K   A   ++  
Sbjct: 105 SEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA--EEEER 162

Query: 696 TTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
                GT  Y+APE          KA    D +S GV+  EL+TG  P   D   N
Sbjct: 163 AYSFCGTIEYMAPEVIRGGSGGHDKAV---DWWSLGVLTFELLTGASPFTVDGEQN 215

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 58.1 bits (140), Expect = 5e-09
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 18/208 (8%)

Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G V    +  +G++ A K+L  +R K    ++  L        E + L  +  +
Sbjct: 8   LGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALN-------EKQILEKVNSQ 60

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP--TRHKIAFGVAQGLAYLH 650
            +V L   + +     LV   M  G+L    H  + ++  P     +  F  A+ L  L 
Sbjct: 61  FVVNLAYAYETKDALCLVLTIMNGGDL--KFH--IYNMGNPGFEEERALFYAAEILCGLE 116

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                  ++RD+K  NILLD     +++D G+A  ++   G+     V  GT GY+APE 
Sbjct: 117 DLHRENTVYRDLKPENILLDDYGHIRISDLGLA--VKIPEGESIRGRV--GTVGYMAPEV 172

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP 738
             + + T   D +  G ++ E+I G+ P
Sbjct: 173 LNNQRYTLSPDYWGLGCLIYEMIEGQSP 200

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 32/213 (15%)

Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V    D  +G+ VA+KKL      V+ +        K    E+  +  + HK
Sbjct: 24  IGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHA--------KRAYRELVLMKLVNHK 75

Query: 593 NIVKL---------YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
           NI+ L            F  +Y   LV E M + NL   +   L H       ++++ + 
Sbjct: 76  NIIGLLNVFTPQKSLEEFQDVY---LVMELM-DANLCQVIQMDLDH------ERMSYLLY 125

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           Q L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T 
Sbjct: 126 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTR 181

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
            Y APE           D++S G ++ E+I G 
Sbjct: 182 YYRAPEVILGMGYKENVDIWSVGCIMGEMIRGT 214

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 58.5 bits (141), Expect = 6e-09
 Identities = 76/280 (27%), Positives = 117/280 (41%), Gaps = 55/280 (19%)

Query: 548 NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYC 606
           N    VAVK L    T    SD         L +E+E +  I +HKNI+ L    +    
Sbjct: 42  NKPVTVAVKMLKDDATDKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGP 92

Query: 607 NLLVYEYMPNGNL---------------WDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             ++ EY   GNL               +D        L +      A+ VA+G+ YL  
Sbjct: 93  LYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLAS 152

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                 IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  
Sbjct: 153 ---QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPV-KWMAPEAL 208

Query: 712 YSSKATTKCDVYSFGVVLMELITGRK------PVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           +    T + DV+SFGV+L E+ T         PVE+ F            K+  KEG   
Sbjct: 209 FDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELF------------KL-LKEG--H 253

Query: 766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +DK  + +   E+  ++R    C    P+ RPT  ++V+
Sbjct: 254 RMDKPANCT--HELYMIMR---ECWHAVPSQRPTFKQLVE 288

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 57.3 bits (138), Expect = 6e-09
 Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 23/213 (10%)

Query: 533 KVGQGGSGTV----YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
           ++G G  GTV    YK+   S + VAVK L         +D +   L   L  E   +  
Sbjct: 2   ELGSGNFGTVKKGMYKM-KKSEKTVAVKIL--------KNDNNDPALKDELLREANVMQQ 52

Query: 589 IRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           + +  IV++   C   S    +LV E    G L   L K   H+      ++   V+ G+
Sbjct: 53  LDNPYIVRMIGICEAESW---MLVMELAELGPLNKFLQKNK-HVTEKNITELVHQVSMGM 108

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            YL     +  +HRD+ + N+LL   +  K++DFG++K L A        T       + 
Sbjct: 109 KYLEE---TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWY 165

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 166 APECMNYYKFSSKSDVWSFGVLMWEAFSYGQKP 198

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 7e-09
 Identities = 31/85 (36%), Positives = 47/85 (55%)

Query: 270 NNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI 329
           N  L G IP  I  L H+  I+LS NS  G I  ++G+  +L  L +  N  +G IP  +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 330 YRAISLVKIDLSDNLLSGPIPSGIG 354
            +  SL  ++L+ N LSG +P+ +G
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 41/237 (17%)

Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + +T  + + +G  G ++   L   +    ++++ +  K  AS   ++Q+   L  E   
Sbjct: 6   DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHAS---EIQVTL-LLQESCL 61

Query: 586 LGNIRHKNIVKLYCYFSSLYCNLLV-YEYMPNGNLWDALHKG-LVHLDWP----TRHKIA 639
           L  + H+NI+ +            V Y YM  GNL   L +  L   + P    T+  + 
Sbjct: 62  LYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVH 121

Query: 640 FG--VAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL---------- 686
               +A G++YLH  G    +IH+DI + N ++D   Q K+ D  +++ L          
Sbjct: 122 MAIQIACGMSYLHKRG----VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGD 177

Query: 687 -QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
            + R  K            ++A E   + + ++  DV+SFGV+L EL+T G+ P  +
Sbjct: 178 NENRPVK------------WMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVE 222

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 658 IHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS---- 713
           +HRDIK  N+LLD N   ++ADFG    L A G   S   V  GT  Y++PE   +    
Sbjct: 124 VHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAV--GTPDYISPEILQAMEDG 181

Query: 714 -SKATTKCDVYSFGVVLMELITGRKP 738
             +   +CD +S GV + E++ G  P
Sbjct: 182 KGRYGPECDWWSLGVCMYEMLYGETP 207

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 57.4 bits (138), Expect = 7e-09
 Identities = 71/306 (23%), Positives = 135/306 (44%), Gaps = 56/306 (18%)

Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTDQLQLDKG 578
           E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  ++++    
Sbjct: 6   EKITMSRELGQGSFGMVYE-GIAKGVVKDEPETRVAIKTV-----NEAASMRERIEF--- 56

Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH------KGLVHLDW 632
              E   +      ++V+L    S     L++ E M  G+L   L       +       
Sbjct: 57  -LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAP 115

Query: 633 PTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA- 688
           P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+ + +   
Sbjct: 116 PSLKKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 172

Query: 689 ----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF 743
               +GGK            +++PE       TT  DV+SFGVVL E+ T   +P +   
Sbjct: 173 DYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG-- 224

Query: 744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV 803
             N+ ++ +V      + G+++  D     +  D + +++R+   C   +P  RP+  E+
Sbjct: 225 MSNEQVLRFV-----MEGGLLDKPD-----NCPDMLFELMRM---CWQYNPKMRPSFLEI 271

Query: 804 VQLLAE 809
           +  + E
Sbjct: 272 ISSIKE 277

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 44/218 (20%)

Query: 534 VGQGGSGT---VYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQ-LQLDKGLKTEVETLGN 588
           +G+ G GT   V K     +G+  A+K +     K      +Q   L      E++ L  
Sbjct: 4   LGKIGEGTFSEVLKAQSRKTGKYYAIKCM-----KKHFKSLEQVNNL-----REIQALRR 53

Query: 589 IR-HKNIVKLY-CYFSSLYCNL-LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           +  H NI++L    F      L LV+E M + NL++ +      L         + + + 
Sbjct: 54  LSPHPNILRLIEVLFDRKTGRLALVFELM-DMNLYELIKGRKRPLPEKRVKSYMYQLLKS 112

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG--GKDSTTTVIAGTY 703
           L ++H    + I HRDIK  NIL+  +   K+ADFG       RG   K   T  I+ T 
Sbjct: 113 LDHMHR---NGIFHRDIKPENILIK-DDILKLADFG-----SCRGIYSKPPYTEYIS-TR 162

Query: 704 GYLAPE-------YAYSSKATTKCDVYSFGVVLMELIT 734
            Y APE       Y        K D+++ G V  E+++
Sbjct: 163 WYRAPECLLTDGYYGP------KMDIWAVGCVFFEILS 194

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 56.9 bits (137), Expect = 8e-09
 Identities = 68/277 (24%), Positives = 107/277 (38%), Gaps = 30/277 (10%)

Query: 533 KVGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G+G  G V+   L +    VAVK         S  +T    L      E   L    H
Sbjct: 2   RIGRGNFGEVFSGRLRADNTPVAVK---------SCRETLPPDLKAKFLQEARILKQYSH 52

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
            NIV+L    +      +V E +  G+    L      L      ++    A G+ YL  
Sbjct: 53  PNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLES 112

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                 IHRD+ + N L+      K++DFG+++  +  G   ST  +      + APE  
Sbjct: 113 ---KHCIHRDLAARNCLVTEKNVLKISDFGMSRE-EEDGVYASTGGMKQIPVKWTAPEAL 168

Query: 712 YSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
              + +++ DV+SFG++L E  + G  P            Y       T+E I + +   
Sbjct: 169 NYGRYSSESDVWSFGILLWEAFSLGAVP------------YANLSNQQTREAIEQGVRLP 216

Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                 D    V R+  RC    P  RP+ + V Q L
Sbjct: 217 CPELCPDA---VYRLMERCWEYDPGQRPSFSTVHQEL 250

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 28/109 (25%)

Query: 6   LTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
           L G +P D S +++L+ ++LS N   G  P S+ ++T+LEVL  + N             
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN------------- 476

Query: 65  FRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIG 113
                         + +G IP S+G +TSL  L L GN ++G +P  +G
Sbjct: 477 --------------SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 10/207 (4%)

Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G  G V+ +   +G      KL++ +    A+   + +  +  +TE   L ++R   
Sbjct: 8   LGTGAYGKVFLVRKVTGH--DTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSP 65

Query: 594 -IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            +V L+  F +     L+ +Y+  G ++  L++     D  +  ++ F   + +  L H 
Sbjct: 66  FLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQ----RDNFSEDEVRFYSGEIILALEHL 121

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               I++RDIK  NILLD      + DFG++K   +   +   T    GT  Y+APE   
Sbjct: 122 HKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSE--EKERTYSFCGTIEYMAPEIIR 179

Query: 713 SSKATTKC-DVYSFGVVLMELITGRKP 738
                 K  D +S G+++ EL+TG  P
Sbjct: 180 GKGGHGKAVDWWSLGILIFELLTGASP 206

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 24/220 (10%)

Query: 523 EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQ-RTKVSASDTDQLQLDKGLK 580
           E+ E     + VG G  G+V    D  +G  VAVKKL    ++ + A  T +        
Sbjct: 14  EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-------- 65

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
            E+  L +++H+N++ L   F+         +     +L  A    +V     T   + F
Sbjct: 66  -ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQF 124

Query: 641 GVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
            + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG+     AR   D  T 
Sbjct: 125 LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGL-----ARHTDDEMTG 176

Query: 698 VIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGR 736
            +A T  Y APE   +        D++S G ++ EL+TGR
Sbjct: 177 YVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 215

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 44/236 (18%)

Query: 528 MTEKNKVGQGGSGTVYKIDL-----------------NSGEVVAVKKLWSQRTKVSASDT 570
           +T K K+G+G  G V+  +                  N   +VAVK L     K + +D 
Sbjct: 7   LTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDF 66

Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL--------- 619
                   LK E++ +  ++  NI++L   C  S   C  ++ EYM NG+L         
Sbjct: 67  --------LK-EIKIMSRLKDPNIIRLLAVCITSDPLC--MITEYMENGDLNQFLSRHEP 115

Query: 620 -WDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA 678
              A    +V + + T   +A  +A G+ YL        +HRD+ + N L+  NY  K+A
Sbjct: 116 QEAAEKADVVTISYSTLIFMATQIASGMKYLSS---LNFVHRDLATRNCLVGKNYTIKIA 172

Query: 679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           DFG+++ L   G              +++ E     K TT  DV++FGV L E++T
Sbjct: 173 DFGMSRNLY-SGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILT 227

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 29/278 (10%)

Query: 531 KNKVGQGGSGTVYKI---DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           + ++G+G  GTVY +      + E + V K      +++ ++T Q         E + L 
Sbjct: 5   QQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPV-GELNPNETVQANQ------EAQLLS 57

Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
            + H  IVK +  F       ++ EY    +L   L +        + +++     Q L 
Sbjct: 58  KLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLL 117

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            +H+     I+HRD+K+ NI L  N   K+ DFG++++L   G  D  TT   GT  Y++
Sbjct: 118 GVHYMHQRRILHRDLKAKNIFLKNNLL-KIGDFGVSRLLM--GSCDLATT-FTGTPYYMS 173

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           PE        +K D++S G +L E+       E   G N     ++S+ +   EG    L
Sbjct: 174 PEALKHQGYDSKSDIWSLGCILYEMCCLAHAFE---GQN-----FLSVVLRIVEGPTPSL 225

Query: 768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +  S      M  +L       +K P+ RP+  E+++
Sbjct: 226 PETYSRQLNSIMQSML-------NKDPSLRPSAAEILR 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 43/228 (18%)

Query: 534 VGQGGSGTV-----YKIDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           +G+G  G V     Y ID +  +    VAVK L     K +A+D D       L +E+E 
Sbjct: 20  LGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKML-----KDNATDKDL----ADLISEMEL 70

Query: 586 LGNI-RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-----------------HKGL 627
           +  I +HKNI+ L    +      ++ EY   GNL + L                  +  
Sbjct: 71  MKLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQ 130

Query: 628 VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK-VL 686
             L +      A+ VA+G+ YL        IHRD+ + N+L+  +   K+ADFG+A+ V 
Sbjct: 131 --LSFKDLVSCAYQVARGMEYLES---RRCIHRDLAARNVLVTEDNVMKIADFGLARGVH 185

Query: 687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
                K ++   +     ++APE  +    T + DV+SFG+++ E+ T
Sbjct: 186 DIDYYKKTSNGRLP--VKWMAPEALFDRVYTHQSDVWSFGILMWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 43/184 (23%)

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-----QARGGKD 693
           +F VA+G+ +L        IHRD+ + NILL  N   K+ DFG+A+ +       R G D
Sbjct: 185 SFQVAKGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKG-D 240

Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYW 752
           +   +      ++APE  +    T + DV+SFGV+L E+ + G  P             +
Sbjct: 241 ARLPL-----KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP-------------Y 282

Query: 753 VSIKVDT------KEGI-MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             +K+D       KEG  M   D         EM Q +   + C    P+ RPT +E+V+
Sbjct: 283 PGVKIDEEFCRRLKEGTRMRAPDYTTP-----EMYQTM---LDCWHGEPSQRPTFSELVE 334

Query: 806 LLAE 809
            L  
Sbjct: 335 HLGN 338

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 54/223 (24%), Positives = 86/223 (38%), Gaps = 37/223 (16%)

Query: 535 GQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNI 594
                  + K    +  +VAVKK       + +   + L+L   L+ E+ T   ++H NI
Sbjct: 11  EDLMIVHLAKHK-PTNTLVAVKK-----INLDSCSKEDLKL---LQQEIITSRQLQHPNI 61

Query: 595 VKLYCYF---SSLYCNLLVYEYMPNGNLWDALHK----GLVHLDWPTRHKIAF---GVAQ 644
           +     F   S LY   +V   M  G+  D L      GL  L       IAF    V  
Sbjct: 62  LPYVTSFIVDSELY---VVSPLMAYGSCEDLLKTHFPEGLPEL------AIAFILKDVLN 112

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK----DSTTTVIA 700
            L Y+H       IHR +K+++ILL  + +  ++    +  +   G +            
Sbjct: 113 ALDYIHS---KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSV 169

Query: 701 GTYGYLAPEYAYSSKA--TTKCDVYSFGVVLMELITGRKPVED 741
               +L+PE    +      K D+YS G+   EL  G  P +D
Sbjct: 170 KNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKD 212

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 78/277 (28%), Positives = 122/277 (44%), Gaps = 55/277 (19%)

Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 50  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 100

Query: 612 EYMPNGNLWDALHK----GLVHL-------DWPTRHK----IAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +        D     K      + VA+G+ YL       
Sbjct: 101 EYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS---QK 157

Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 158 CIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPV-KWMAPEALFDRVY 216

Query: 717 TTKCDVYSFGVVLMELIT--GRK----PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV++ E+ T  G      PVE+ F            K+  KEG    +DK 
Sbjct: 217 THQSDVWSFGVLMWEIFTLGGSPYPGIPVEELF------------KL-LKEG--HRMDKP 261

Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 262 ANCT--NELYMMMR---DCWHAIPSHRPTFKQLVEDL 293

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 66/279 (23%), Positives = 117/279 (41%), Gaps = 33/279 (11%)

Query: 531 KNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           + K+G+G    VY+   L  G  VA+KK       V   D    +       E++ L  +
Sbjct: 7   EKKIGRGQFSEVYRATCLLDGVPVALKK-------VQIFDLMDAKARADCIKEIDLLKQL 59

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-----HKGLVHLDWPTRHKIAFGVAQ 644
            H N++K Y  F       +V E    G+L   +      K L+    P +    + V Q
Sbjct: 60  NHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLI----PEKTVWKYFV-Q 114

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
             + L H     ++HRDIK  N+ +      K+ D G+ +   +   K +    + GT  
Sbjct: 115 LCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS---KTTAAHSLVGTPY 171

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           Y++PE  + +    K D++S G +L E+   + P    +GD  N +Y +  K++  +   
Sbjct: 172 YMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPF---YGDKMN-LYSLCKKIEQCD--- 224

Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV 803
                  S  + +E+ Q++ +   C +  P  RP +  V
Sbjct: 225 --YPPLPSDHYSEELRQLVNM---CINPDPEKRPDITYV 258

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 43/184 (23%)

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           ++ VA+G+++L        IHRD+ + NILL      K+ DFG+     AR  ++ +  V
Sbjct: 220 SYQVAKGMSFLAS---KNCIHRDLAARNILLTHGRITKICDFGL-----ARDIRNDSNYV 271

Query: 699 IAGT----YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV 753
           + G       ++APE  ++   T + DV+S+G++L E+ + G  P             + 
Sbjct: 272 VKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSP-------------YP 318

Query: 754 SIKVDTKEGIMEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            + VD+K        K +   +R         EM  +++    C    P  RPT  ++VQ
Sbjct: 319 GMPVDSK------FYKMIKEGYRMLSPECAPSEMYDIMK---SCWDADPLKRPTFKQIVQ 369

Query: 806 LLAE 809
           L+ +
Sbjct: 370 LIEQ 373

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 44/199 (22%)

Query: 618 NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV 677
           +L D L               +  VAQG+ +L        IHRD+ + N+LL      K+
Sbjct: 210 DLDDLLR-------------FSSQVAQGMDFLAS---KNCIHRDVAARNVLLTDGRVAKI 253

Query: 678 ADFGIAKVLQARGGKDSTTTVIAGT----YGYLAPEYAYSSKATTKCDVYSFGVVLMELI 733
            DFG+     AR   + +  V+ G       ++APE  +    T + DV+S+G++L E+ 
Sbjct: 254 CDFGL-----ARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIF 308

Query: 734 T-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM--IQVLRIAIRCT 790
           + G+ P             +  I V++K   M     ++S   R +    ++  I   C 
Sbjct: 309 SLGKSP-------------YPGILVNSKFYKMVKRGYQMS---RPDFAPPEIYSIMKMCW 352

Query: 791 SKSPATRPTMNEVVQLLAE 809
           +  P  RPT +++ QL+  
Sbjct: 353 NLEPTERPTFSQISQLIQR 371

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 56.6 bits (136), Expect = 3e-08
 Identities = 49/204 (24%), Positives = 78/204 (38%), Gaps = 48/204 (23%)

Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           +K E + L    ++ +VKLY  F        V +Y+P G++   L    + ++       
Sbjct: 48  VKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLL----IRMEVFPEVLA 103

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA--------------- 683
            F +A+    +        IHRDIK  NIL+D++   K+ DFG+                
Sbjct: 104 RFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKG 163

Query: 684 --------------------------KVLQARGGKDSTTTV---IAGTYGYLAPEYAYSS 714
                                     K L+ R  K     +   + GT  Y+APE     
Sbjct: 164 SHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRK 223

Query: 715 KATTKCDVYSFGVVLMELITGRKP 738
             T  CD +S GV+L E++ G+ P
Sbjct: 224 GYTQLCDWWSVGVILFEMLVGQPP 247

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 79/329 (24%), Positives = 130/329 (39%), Gaps = 84/329 (25%)

Query: 531 KNKVGQGGSGTVYKIDLNSGE-----------------VVAVKKLWSQRTKVSASDTDQL 573
           K K+G+G  G V+  ++ + +                 +VAVK L     K + +D    
Sbjct: 10  KEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDF--- 66

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL-------- 623
                LK EV+ L  ++  NI++L   C      C  ++ EYM NG+L   L        
Sbjct: 67  -----LK-EVKILSRLKDPNIIRLLGVCVDEDPLC--MITEYMENGDLNQFLSSHHLDDK 118

Query: 624 -----------HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN 672
                      H     + + +   +A  +A G+ YL        +HRD+ + N L+  N
Sbjct: 119 EENGNDAVPPAHCLPA-ISYSSLLHVALQIASGMKYLSS---LNFVHRDLATRNCLVGEN 174

Query: 673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
              K+ADFG+++ L A G              ++A E     K TT  DV++FGV L E+
Sbjct: 175 LTIKIADFGMSRNLYA-GDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEI 233

Query: 733 ITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVL--------- 783
           +   K  E  +G+             T E ++E         FRD+  QV          
Sbjct: 234 LMLCK--EQPYGEL------------TDEQVIE----NAGEFFRDQGRQVYLFRPPPCPQ 275

Query: 784 ---RIAIRCTSKSPATRPTMNEVVQLLAE 809
               + ++C S+    RP+ +++   L E
Sbjct: 276 GLYELMLQCWSRDCRERPSFSDIHAFLTE 304

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.4 bits (133), Expect = 6e-08
 Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 35/205 (17%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
           NL+ LDLS+N      P  + NL NL+ L  + N                    +     
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND-------------------LS---- 176

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL 137
                 +P  + N+++L +L+L+GN I+  +PPEI LL  L +L+L  N  +   +   L
Sbjct: 177 -----DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII--ELLSSL 228

Query: 138 GNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLY 197
            NL  L+ L++S N+    +PESI  L  L  L L NN +S    S + + T L  L L 
Sbjct: 229 SNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLS 285

Query: 198 DNSLTGEVPQDLGQWSPLVVLDLSE 222
            NSL+  +P        L +L    
Sbjct: 286 GNSLSNALPLIALLLLLLELLLNLL 310

Length = 394

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 54.7 bits (131), Expect = 9e-08
 Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 44/238 (18%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V  +   ++G V A+K L  +   +       ++ ++ +  E ++L      
Sbjct: 9   IGRGAFGEVRLVQKKDTGHVYAMKIL-RKADMLEKEQVGHIRAERDILVEADSLW----- 62

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            +VK++  F       L+ E++P G++   L K     D  T  +  F +A+ +  +   
Sbjct: 63  -VVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK----DTLTEEETQFYIAETVLAIDSI 117

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----------------------QARG 690
                IHRDIK  N+LLD     K++DFG+   L                      Q   
Sbjct: 118 HQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMN 177

Query: 691 GKDSTTT----------VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            K    T             GT  Y+APE    +     CD +S GV++ E++ G  P
Sbjct: 178 SKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPP 235

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 37/237 (15%)

Query: 525 LEAMTEKNKVGQGGSGTVYKIDL-----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           L A+    ++G+   G +YK  L     +  ++VA+K L          D +  Q     
Sbjct: 4   LSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTL---------KDINNPQQWGEF 54

Query: 580 KTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--------------HK 625
           + E   +  + H NIV L    +      +++EY+  G+L + L                
Sbjct: 55  QQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDED 114

Query: 626 GLVH--LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
           G V   LD      IA  +A G+ YL        +H+D+ + NIL+      K++D G++
Sbjct: 115 GTVKSSLDHGDFLHIAIQIAAGMEYLSSHFF---VHKDLAARNILIGEQLHVKISDLGLS 171

Query: 684 K-VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           + +  A   +    +++     ++ PE     K ++  D++SFGVVL E+ + G +P
Sbjct: 172 REIYSADYYRVQPKSLLP--IRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQP 226

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 36/224 (16%)

Query: 530 EKNKVGQGGSGTVYKIDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           E  KVG+G  G VYK     G+     A+K++      +SA              E+  L
Sbjct: 5   EGCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSAC------------REIALL 52

Query: 587 GNIRHKNIVKLYCYFSSLYCN--LLVYEYMPNGNLWDAL--------HKGLVHLDWPTRH 636
             ++H N++ L   F S       L+++Y  + +LW  +        +K  V L      
Sbjct: 53  RELKHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVK 111

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-----KVADFGIAKVLQARGG 691
            + + +  G+ YLH      ++HRD+K  NIL+ +   P     K+AD G A++  +   
Sbjct: 112 SLLYQILDGIHYLHANW---VLHRDLKPANILV-MGEGPERGRVKIADMGFARLFNSPLK 167

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKC-DVYSFGVVLMELIT 734
             +    +  T+ Y APE    ++  TK  D+++ G +  EL+T
Sbjct: 168 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLT 211

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 287 VSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLS 346
           +  + L      G I N +   R+L  + +  N I G IP  +    SL  +DLS N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 347 GPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSL----KSLNVLD 387
           G IP  +G L  L +L L  N L+  +P +L        S N  D
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524

Length = 623

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 51/294 (17%)

Query: 534 VGQGGSGTV----YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G+V     K +  S + VAVK L  +    S+SD ++      L+ E   +   
Sbjct: 7   LGKGEFGSVREAQLKSEDGSFQKVAVKML--KADIFSSSDIEEF-----LR-EAACMKEF 58

Query: 590 RHKNIVKLYCYF------SSLYCNLLVYEYMPNGNLWDALHKGLV-----HLDWPTRHKI 638
            H N++KL            L   +++  +M +G+L   L    +      L   T  + 
Sbjct: 59  DHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRF 118

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA----RGGKDS 694
              +A G+ YL        IHRD+ + N +L+ N    VADFG++K + +    R G  S
Sbjct: 119 MIDIASGMEYLSS---KNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCAS 175

Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV 753
              V      +LA E    +  TT  DV++FGV + E++T G+ P     G   + IY  
Sbjct: 176 KLPV-----KWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYA---GVENSEIYNY 227

Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            IK +  +   + L+             V  +  +C S  P  RP+   +   L
Sbjct: 228 LIKGNRLKQPPDCLE------------DVYELMCQCWSPEPKCRPSFQHLRDQL 269

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 53.9 bits (129), Expect = 2e-07
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 24/220 (10%)

Query: 523 EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQ-RTKVSASDTDQLQLDKGLK 580
           E+ E       VG G  G+V    D    + VAVKKL    ++ + A  T +        
Sbjct: 12  EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYR-------- 63

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
            E+  L +++H+N++ L   F+         E     NL  A    +V     +   + F
Sbjct: 64  -ELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVKCQKLSDEHVQF 122

Query: 641 GVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
            + Q   GL Y+H    + IIHRD+K +N+ ++ + + ++ DFG+     AR   D  T 
Sbjct: 123 LIYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCELRILDFGL-----ARQADDEMTG 174

Query: 698 VIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGR 736
            +A T  Y APE   +        D++S G ++ EL+ G+
Sbjct: 175 YVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGK 213

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 19/207 (9%)

Query: 534 VGQGGSGTVYKIDLNSGEV--VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +G G  G V      + +   VA+K+   +++K+      Q Q+D  + +E + L  I H
Sbjct: 38  LGTGSFGRVILATYKNEDFPPVAIKRF--EKSKI----IKQKQVDH-VFSERKILNYINH 90

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
              V LY  F       LV E++  G  +  L +   +  +P      F  AQ +    +
Sbjct: 91  PFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRR---NKRFPNDVG-CFYAAQIVLIFEY 146

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I++RD+K  N+LLD +   K+ DFG AKV+  R      T  + GT  Y+APE  
Sbjct: 147 LQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR------TYTLCGTPEYIAPEIL 200

Query: 712 YSSKATTKCDVYSFGVVLMELITGRKP 738
            +       D ++ G+ + E++ G  P
Sbjct: 201 LNVGHGKAADWWTLGIFIYEILVGCPP 227

Length = 340

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 68/323 (21%)

Query: 526 EAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGL 579
           E +T   ++GQG  G VY+    D+  GE    VAVK +       SAS  ++++     
Sbjct: 6   EKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRERIEF---- 56

Query: 580 KTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH--- 636
             E   +      ++V+L    S     L+V E M +G+L   L       +        
Sbjct: 57  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 116

Query: 637 ------KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA-- 688
                 ++A  +A G+AYL+       +HRD+ + N ++  ++  K+ DFG+ + +    
Sbjct: 117 TLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETD 173

Query: 689 ---RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
              +GGK            ++APE       TT  D++SFGVVL E+ +   +P +    
Sbjct: 174 YYRKGGKGLLPV------RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGL-- 225

Query: 745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDE-------MIQVLRIAIRCTSKSPATR 797
            N+ ++ +V                 + G + D+       +  ++R+   C   +P  R
Sbjct: 226 SNEQVLKFV-----------------MDGGYLDQPDNCPERVTDLMRM---CWQFNPKMR 265

Query: 798 PTMNEVVQLLAEADPCRFESCKF 820
           PT  E+V LL +     F    F
Sbjct: 266 PTFLEIVNLLKDDLHPSFPEVSF 288

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 37/181 (20%)

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +F VA+G+ +L        IHRD+ + NILL  N   K+ DFG+A+ +     KD    V
Sbjct: 179 SFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIY----KDP-DYV 230

Query: 699 IAGT----YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP-----VEDDFGDNKN 748
             G       ++APE  +    TT+ DV+SFGV+L E+ + G  P     ++++F     
Sbjct: 231 RKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRR-- 288

Query: 749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
                      KEG           +      ++  I + C   +P  RPT +E+V++L 
Sbjct: 289 ----------LKEGTR-------MRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEILG 331

Query: 809 E 809
           +
Sbjct: 332 D 332

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 35/224 (15%)

Query: 534 VGQGGSGTVYKIDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G+G  G+V +  LN  +    VAVK +     K++     +++      +E   +    
Sbjct: 7   LGEGEFGSVMEGQLNQDDSILKVAVKTM-----KIAICTRSEME---DFLSEAVCMKEFD 58

Query: 591 HKNIVKL--YCYFSS----LYCNLLVYEYMPNGNLWDAL---HKGLVHLDWPTRHKIAF- 640
           H N+++L   C  +         +++  +M +G+L   L     G      PT+  + F 
Sbjct: 59  HPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFM 118

Query: 641 -GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA----RGGKDST 695
             +A G+ YL        IHRD+ + N +L+ N    VADFG++K +      R G+ + 
Sbjct: 119 TDIASGMEYLSS---KSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAK 175

Query: 696 TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
             V      ++A E       TTK DV+SFGV + E+ T G+ P
Sbjct: 176 MPV-----KWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTP 214

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 14/112 (12%)

Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL----DWPT 634
           ++ E + L   +   IV LY    S     LV EY+  G++     K L+H+    D   
Sbjct: 51  VQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIGGDV-----KSLLHIYGYFDEEM 105

Query: 635 RHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV 685
             K    VA  L YLH HG    IIHRD+K  N+L+      K+ DFG++KV
Sbjct: 106 AVKYISEVALALDYLHRHG----IIHRDLKPDNMLISNEGHIKLTDFGLSKV 153

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 68/246 (27%), Positives = 94/246 (38%), Gaps = 37/246 (15%)

Query: 496 TEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAV 555
            EP ET SSS    D  S  R+   Q  IL ++T       G  G V+         V  
Sbjct: 75  QEPCETTSSS----DPASVVRM---QYNILSSLTP------GSEGEVF---------VCT 112

Query: 556 KKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS--SLYCNLL-VYE 612
           K    QR KV           K    E++ L  I H+ I+ L   +   S  C ++  Y+
Sbjct: 113 KHGDEQRKKVIVKAVTG---GKTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK 169

Query: 613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN 672
                +L+  +      L       I   + + LAYLH      IIHRD+K+ NI LD  
Sbjct: 170 C----DLFTYV-DRSGPLPLEQAITIQRRLLEALAYLHG---RGIIHRDVKTENIFLDEP 221

Query: 673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
               + DFG A  L A           +GT    +PE         K D++S G+VL E+
Sbjct: 222 ENAVLGDFGAACKLDAHPDTPQCYG-WSGTLETNSPELLALDPYCAKTDIWSAGLVLFEM 280

Query: 733 ITGRKP 738
                 
Sbjct: 281 SVKNVT 286

Length = 392

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 62/268 (23%)

Query: 534 VGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V  +   ++G++ A+K L     K      DQL     +K E + L      
Sbjct: 9   IGKGAFGEVRLVQKKDTGKIYAMKTL----LKSEMFKKDQL---AHVKAERDVLAESDSP 61

Query: 593 NIVKLYCYFS-SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
            +V LY  F  + Y  L++ E++P G+L   L K     +  TR  +A  V   +  +H 
Sbjct: 62  WVVSLYYSFQDAQYLYLIM-EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVL-AIEAVHK 119

Query: 652 -GLLSPIIHRDIKSTNILLDVNYQPKVADFGIA-------------KVLQARGGKDSTTT 697
            G     IHRDIK  NIL+D     K++DFG++             K+LQ +  K+    
Sbjct: 120 LGF----IHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDN 175

Query: 698 ---------------------------VIA----GTYGYLAPEYAYSSKATTKCDVYSFG 726
                                      ++A    GT  Y+APE         +CD +S G
Sbjct: 176 RNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLG 235

Query: 727 VVLMELITGRKPV--EDDFGDNKNIIYW 752
            ++ E + G  P   E+     + II W
Sbjct: 236 AIMFECLIGWPPFCSENSHETYRKIINW 263

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 52.4 bits (125), Expect = 4e-07
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 36/224 (16%)

Query: 530 EKNKVGQGGSGTVYKIDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           E  KVG+G  G VYK     G+     A+K++      +SA              E+  L
Sbjct: 5   EGCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSAC------------REIALL 52

Query: 587 GNIRHKNIVKLYCYFSSLYCN--LLVYEYMPNGNLWDAL--------HKGLVHLDWPTRH 636
             ++H N++ L   F S       L+++Y  + +LW  +        +K  + L      
Sbjct: 53  RELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVK 111

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-----KVADFGIAKVLQARGG 691
            + + +  G+ YLH      ++HRD+K  NIL+ +   P     K+AD G A++  +   
Sbjct: 112 SLLYQILDGIHYLHANW---VLHRDLKPANILV-MGEGPERGRVKIADMGFARLFNSPLK 167

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKC-DVYSFGVVLMELIT 734
             +    +  T+ Y APE    ++  TK  D+++ G +  EL+T
Sbjct: 168 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLT 211

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+V L+ Y  S     LV ++   G LW  + K L ++      + A  +   L  LH  
Sbjct: 46  NMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFL-NIPEECVKRWAAEMVVALDALHR- 103

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               I+ RD+   NILLD     ++  F     ++     ++   +      Y APE   
Sbjct: 104 --EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENM------YCAPEVGG 155

Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVE 740
            S+ T  CD +S G +L EL+TG+  VE
Sbjct: 156 ISEETEACDWWSLGAILFELLTGKTLVE 183

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 50/205 (24%)

Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHK 637
           +K E + L    ++ +V+LY  F        V +Y+P G++   L + G+   D      
Sbjct: 48  VKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFPEDLAR--- 104

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA-------------- 683
             F +A+    +        IHRDIK  NIL+D +   K+ DFG+               
Sbjct: 105 --FYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQS 162

Query: 684 ---------------------------KVLQARGGKDSTTTV---IAGTYGYLAPEYAYS 713
                                      K L+ R  +     +   + GT  Y+APE    
Sbjct: 163 GDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLR 222

Query: 714 SKATTKCDVYSFGVVLMELITGRKP 738
           +  T  CD +S GV+L E++ G+ P
Sbjct: 223 TGYTQLCDWWSVGVILYEMLVGQPP 247

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 44/238 (18%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V  +   ++G + A+K L         +D  + +    ++ E + L      
Sbjct: 9   IGRGAFGEVRLVQKKDTGHIYAMKIL-------RKADMLEKEQVAHIRAERDILVEADGA 61

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            +VK++  F       L+ E++P G++   L K     D  +     F +A+ +  +   
Sbjct: 62  WVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK----DTLSEEATQFYIAETVLAIDAI 117

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----------------------QARG 690
                IHRDIK  N+LLD     K++DFG+   L                      Q   
Sbjct: 118 HQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMN 177

Query: 691 GKDSTTT----------VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            K    T             GT  Y+APE    +     CD +S GV++ E++ G  P
Sbjct: 178 SKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPP 235

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 30/229 (13%)

Query: 531 KNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           + K+G+G    VY+   L   + VA+KK+       + +  D ++       E++ L  +
Sbjct: 7   EKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVK-------EIDLLKQL 59

Query: 590 RHKNIVKLYCYFSSLYCNL---LVYEYMPNGNLWDAL-----HKGLVHLDWPTRHKIAFG 641
            H N++K   Y  S   +    +V E    G+L   +      K L+    P R    + 
Sbjct: 60  NHPNVIK---YLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLI----PERTVWKYF 112

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V Q  + + H     ++HRDIK  N+ +      K+ D G+ +   +   K +    + G
Sbjct: 113 V-QLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS---KTTAAHSLVG 168

Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
           T  Y++PE  + +    K D++S G +L E+   + P    +GD  N+ 
Sbjct: 169 TPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPF---YGDKMNLF 214

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 24/209 (11%)

Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V    D      VA+KKL       S    +Q    +  + E+  +  + HK
Sbjct: 32  IGSGAQGIVCAAYDAILERNVAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVNHK 83

Query: 593 NIVKLYCYFS---SL--YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
           NI+ L   F+   SL  + ++ +   + + NL   +   L H       ++++ + Q L 
Sbjct: 84  NIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDH------ERMSYLLYQMLC 137

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y A
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRYYRA 193

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGR 736
           PE           D++S G ++ E+I G 
Sbjct: 194 PEVILGMGYKENVDIWSVGCIMGEMIKGG 222

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 334 SLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNL 392
           +L  +DLS+N L+  IP G    L  L +L L  N L S  P + S L SL  LDLS N 
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 393 L 393
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 39/244 (15%)

Query: 578 GLKTEVETLGNIRHKNIVKLYCYFS--SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR 635
           G  TE   L  I H +I++L   F+     C L++  Y  +   + A  + +   D    
Sbjct: 129 GTATEAHILRAINHPSIIQLKGTFTYNKFTC-LILPRYKTDLYCYLAAKRNIAICDILA- 186

Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA----KVLQARGG 691
             I   V + + YLH    + IIHRDIK+ NI ++      + DFG A     +   +  
Sbjct: 187 --IERSVLRAIQYLHE---NRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANK-- 239

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                   AGT    APE           D++S G+VL E+ T    + +  G + +   
Sbjct: 240 ----YYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGD--- 292

Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMI---------QVLRIAIRCTSKSPATRPTMNE 802
                 D+   I  ++ +  SG+  +E             + +A + +S+ P +RP    
Sbjct: 293 -----CDSDRQIKLIIRR--SGTHPNEFPIDAQANLDEIYIGLAKK-SSRKPGSRPLWTN 344

Query: 803 VVQL 806
           + +L
Sbjct: 345 LYEL 348

Length = 391

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 30/219 (13%)

Query: 524 ILEAMTEKNKVGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           +L+       +G G  G V   Y   L+    VA+KKL       S    +Q    +  +
Sbjct: 15  VLKRYQNLKPIGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR 65

Query: 581 TEVETLGNIRHKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
            E+  +  + HKNI+ L   F+            LV E M + NL   +   L H     
Sbjct: 66  -ELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELM-DANLCQVIQMELDH----- 118

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
             ++++ + Q L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G   
Sbjct: 119 -ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSF 173

Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELI 733
             T    T  Y APE           D++S G ++ E++
Sbjct: 174 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 212

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 31/170 (18%)

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLH-H 651
           +V ++C F +     +V EY+  G+    L + G + +D   R   A  V   L YLH +
Sbjct: 63  VVSMFCSFETKRHLCMVMEYVEGGDCATLLKNIGALPVDM-ARMYFAETVL-ALEYLHNY 120

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV------------- 698
           G    I+HRD+K  N+L+      K+ DFG++K+    G    TT +             
Sbjct: 121 G----IVHRDLKPDNLLITSMGHIKLTDFGLSKI----GLMSLTTNLYEGHIEKDTREFL 172

Query: 699 ---IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD 745
              + GT  Y+APE           D ++ G++L E + G  P    FGD
Sbjct: 173 DKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPF---FGD 219

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 55/231 (23%), Positives = 86/231 (37%), Gaps = 43/231 (18%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLT---NLEVLSFNENP--GFKLWKLPESSIFRLTKLRI 72
            L+ LDLS+N         + +L    +L+ L  N N      L  L +        L  
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 73  MVLATCALHGQIPASIGNV----TSLTDLELTGNFITG----HIPPEIGLLKNLRQLELY 124
           +VL    L G    ++         L +L L  N I       +   +    NL  L+L 
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL- 200

Query: 125 YNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
                         N   LTD   S       + E++  L  L VL L +N+L+   ++ 
Sbjct: 201 --------------NNNGLTDEGAS------ALAETLASLKSLEVLNLGDNNLTDAGAAA 240

Query: 185 IAN-----STTLTMLSLYDNSLTGEVPQDLGQWSP----LVVLDLSENKLS 226
           +A+     + +L  LSL  N +T +  +DL +       L+ LDL  NK  
Sbjct: 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 39/291 (13%)

Query: 533 KVGQGGSGTVYKIDLNSG---EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           ++G G  G V   ++NSG     V VK+L     +VSAS  +Q++       E +   ++
Sbjct: 2   EIGNGWFGKVILGEVNSGYTPAQVVVKEL-----RVSASVQEQMKF----LEEAQPYRSL 52

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK----GLVHLDWPTRHKIAFGVAQG 645
           +H N+++     + +   LLV E+ P G+L   L       L+  D  T  ++A  +A G
Sbjct: 53  QHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALG 112

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L +LH    +  IH D+   N LL  +   K+ D+G++   + +     T   +     +
Sbjct: 113 LLHLHK---NNFIHSDLALRNCLLTADLTVKIGDYGLSH-NKYKEDYYVTPDQLWVPLRW 168

Query: 706 LAPEYA-------YSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
           +APE              T + +V+S GV + EL   G +P      D + + Y V    
Sbjct: 169 IAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYR-HLSDEQVLTYTV---- 223

Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
             +E  +++   +L     D   +V++    C  + P  RP+  EV  LL+
Sbjct: 224 --REQQLKLPKPRLKLPLSDRWYEVMQF---CWLQ-PEQRPSAEEVHLLLS 268

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           ++ VA G+ +L        +HRD+ + N+L+      K+ DFG+A+ +     +DS    
Sbjct: 245 SYQVANGMEFLAS---KNCVHRDLAARNVLICEGKLVKICDFGLARDIM----RDSNYIS 297

Query: 699 IAGTY---GYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
              T+    ++APE  +++  TT  DV+SFG++L E+ T
Sbjct: 298 KGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFT 336

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 49.4 bits (117), Expect = 7e-06
 Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 38/191 (19%)

Query: 579 LKTEVETLGNIRHKNIVKLYCYF-----SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
           L  EV  +  ++HKNIV+    F       LY   ++ E+   G+L   + K        
Sbjct: 59  LVIEVNVMRELKHKNIVRYIDRFLNKANQKLY---ILMEFCDAGDLSRNIQKCYKMFGKI 115

Query: 634 TRHKIAFGVAQ---GLAYLHHGLLSP----IIHRDIKSTNILL---------------DV 671
             H I     Q    LAY H+    P    ++HRD+K  NI L               ++
Sbjct: 116 EEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNL 175

Query: 672 NYQP--KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKAT--TKCDVYSFGV 727
           N +P  K+ DFG++K +    G +S      GT  Y +PE       +   K D+++ G 
Sbjct: 176 NGRPIAKIGDFGLSKNI----GIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGC 231

Query: 728 VLMELITGRKP 738
           ++ EL +G+ P
Sbjct: 232 IIYELCSGKTP 242

Length = 1021

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 69/281 (24%), Positives = 106/281 (37%), Gaps = 61/281 (21%)

Query: 164 LPKLRVLQLYNNSLSGE----ISSVIANSTTLTMLSLYDNSL------TGEVPQDLGQWS 213
           L  L+VL+L  N+L  E    ++S +    +L  L L  N           + Q L +  
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81

Query: 214 PLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHL 273
            L  LDLS+N L       + S        +L++     L              ++NN L
Sbjct: 82  GLQELDLSDNALGPDGCGVLES--------LLRSSSLQELK-------------LNNNGL 120

Query: 274 EGS----IPEGILSLPH-VSIIDLSYNSFSG----PIANTVGNARNLSELFMQRNQISGF 324
                  + +G+  LP  +  + L  N   G     +A  +   R+L EL +  N I   
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 325 -IPS--EIYRAIS-LVKIDLSDN--------LLSGPIPSGIGNLKKLNLLMLQSNKLNSS 372
            I +  E  +A   L  +DL++N         L+  + S    LK L +L L  N L  +
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS----LKSLEVLNLGDNNLTDA 236

Query: 373 I-----PNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNS 408
                    LS   SL  L LS N +T    + L E+L   
Sbjct: 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 619 LWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA 678
           L D   +GL  LD  +     + VA+G+ +L        +HRD+ + N+LL      K+ 
Sbjct: 226 LSDDGSEGLTTLDLLS---FTYQVARGMEFLAS---KNCVHRDLAARNVLLAQGKIVKIC 279

Query: 679 DFGIAKVLQARGGKDSTTTVIAGTY---GYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           DFG+A+ +      DS       T+    ++APE  + +  TT  DV+S+G++L E+ +
Sbjct: 280 DFGLARDIM----HDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFS 334

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV-IAGTYGYLAPEYAYSSK 715
           IIHRDIK+ N+L++      + DFG A    ARG   +     IAGT    APE      
Sbjct: 281 IIHRDIKTENVLVNGPEDICLGDFGAACF--ARGSWSTPFHYGIAGTVDTNAPEVLAGDP 338

Query: 716 ATTKCDVYSFGVVLME 731
            T   D++S G+V+ E
Sbjct: 339 YTPSVDIWSAGLVIFE 354

Length = 461

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 47.0 bits (111), Expect = 3e-05
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 20/165 (12%)

Query: 579 LKTEVETLGNIRHKNIVKL--------YCYFSSLYCNLLVYEYMPNGNL-WDALHKGLVH 629
           L+ E+  LG + H+NI+K+          Y  +   +  +Y +M +    W         
Sbjct: 210 LENEILALGRLNHENILKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKD-----RP 264

Query: 630 LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
           L   TR  I   +   + Y+H   L   IHRDIK  NI L+ + +  + DFG A   +  
Sbjct: 265 LLKQTR-AIMKQLLCAVEYIHDKKL---IHRDIKLENIFLNCDGKIVLGDFGTAMPFEKE 320

Query: 690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
             +++      GT    +PE           D++S G++L+++++
Sbjct: 321 --REAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLS 363

Length = 501

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 28/89 (31%), Positives = 41/89 (46%)

Query: 218 LDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSI 277
           L L    L G +P  +     LQ   +  N   G +P SL    +L    +S N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 278 PEGILSLPHVSIIDLSYNSFSGPIANTVG 306
           PE +  L  + I++L+ NS SG +   +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 358 KLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNR 415
            L  L L +N+L      +   L +L VLDLS N LT   PE+    LP+  S++ S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSG-LPSLRSLDLSGNN 59

Query: 416 L 416
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 41/231 (17%)

Query: 533 KVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           ++G+   G VYK  L         + VA+K L          D  +  L +  K E    
Sbjct: 12  ELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTL---------KDKAEGPLREEFKHEAMMR 62

Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH---------------LD 631
             ++H NIV L    +      +++ Y  + +L + L     H               L+
Sbjct: 63  SRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLE 122

Query: 632 WPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK-VLQA 688
                 I   +A G+ +L  HH     ++H+D+ + N+L+      K++D G+ + V  A
Sbjct: 123 PADFVHIVTQIAAGMEFLSSHH-----VVHKDLATRNVLVFDKLNVKISDLGLFREVYAA 177

Query: 689 RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              K    +++     +++PE     K +   D++S+GVVL E+ + G +P
Sbjct: 178 DYYKLMGNSLLP--IRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQP 226

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 55/229 (24%), Positives = 83/229 (36%), Gaps = 44/229 (19%)

Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNH 152
           SL +L L+ N  TG IP  +  L                   + L     L +LD+S N 
Sbjct: 52  SLKELCLSLNE-TGRIPRGLQSL------------------LQGLTKGCGLQELDLSDNA 92

Query: 153 LSGKIP---ESILRLPKLRVLQLYNNSLSGEISSVIANSTT-----LTMLSLYDNSLTGE 204
           L        ES+LR   L+ L+L NN L      ++A         L  L L  N L G 
Sbjct: 93  LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152

Query: 205 VPQDLGQWSP----LVVLDLSENKLSGPLPAKVCSRGKLQ---YFLVLQNMF-----SGV 252
             + L +       L  L+L+ N +       +    K       L L N       +  
Sbjct: 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA 212

Query: 253 LPDSLARCKNLLRFRVSNNHL-EGSIPEGILSLPHVSI----IDLSYNS 296
           L ++LA  K+L    + +N+L +        +L   +I    + LS N 
Sbjct: 213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 19/162 (11%)

Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
           + HK+IV LY        N++V E++  G L   +H+    L  P + K+A  +A  L+Y
Sbjct: 61  VSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSY 120

Query: 649 LHHGLLSPIIHRDIKSTNILL-----DVNYQP--KVADFGIAKVLQARGGKDSTTTVIAG 701
           L       ++H ++ + NILL     D    P  K++D GI   + +R  ++    +   
Sbjct: 121 LED---KDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSR--QECVERI--- 172

Query: 702 TYGYLAPEYAYSSKA-TTKCDVYSFGVVLMEL-ITGRKPVED 741
              ++APE    SK  +   D +SFG  L E+   G  P++D
Sbjct: 173 --PWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKD 212

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 262

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 74/299 (24%), Positives = 123/299 (41%), Gaps = 58/299 (19%)

Query: 533 KVGQGGSGTVYKIDLNSGEVVA---VKKLWSQRTKVSASDTDQLQ-LDKGLKTEVETLGN 588
           ++G G  G V   ++ +   VA   VK+L     K +AS  +Q + L +G    +     
Sbjct: 2   EIGNGWFGKVLLSEIYTDTGVARVVVKEL-----KANASSKEQNEFLQQGDPYRI----- 51

Query: 589 IRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTR-------HKI 638
           ++H NI++    C  +  Y  LLV+EY   G+L     K  L    W  R        ++
Sbjct: 52  LQHPNILQCLGQCVEAIPY--LLVFEYCELGDL-----KSYLSQEQWHRRNSQLLLLQRM 104

Query: 639 AFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           A  +A G+ ++H H  L    H D+   N  L  +   KV D+GI     +R  +D   T
Sbjct: 105 ACEIAAGVTHMHKHNFL----HSDLALRNCFLTSDLTVKVGDYGIGP---SRYKEDYIET 157

Query: 698 --VIAGTYGYLAPEYA-------YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                    +LAPE          +++ T   +V++ GV L EL            D + 
Sbjct: 158 EDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSD-RE 216

Query: 749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           ++  V      K+  +++   +L   + +   +VL+        SP  R T  EV +LL
Sbjct: 217 VLNHV-----IKDQQVKLFKPQLELPYSERWYEVLQFCWL----SPEKRATAEEVHRLL 266

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 24/161 (14%)

Query: 583 VETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
              +  + HK++VKLY  C       N++V EY+  G L   LH+   ++    +  +A 
Sbjct: 52  ASLMSQLSHKHLVKLYGVCVRDE---NIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAK 108

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILL-----DVNYQP--KVADFGIAKVLQARGGKD 693
            +A  L YL       ++H ++   NIL+     +  Y P  K++D GI   + +R  + 
Sbjct: 109 QLASALHYLED---KKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERV 165

Query: 694 STTTVIAGTYGYLAPEYAY--SSKATTKCDVYSFGVVLMEL 732
                      ++APE      +  T   D +SFG  L+E+
Sbjct: 166 ERIP-------WIAPECIRNGQASLTIAADKWSFGTTLLEI 199

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 35/239 (14%)

Query: 534 VGQGGSGTVYKID------LNSGEVVAVKKLWSQRTKVSAS-------DTDQLQLDKGLK 580
           +G GG G VY+        +N+  V  ++ L    T V  +       D D++ L K + 
Sbjct: 20  IGCGGFGCVYETQCASDHCINNQAVAKIENL-ENETIVMETLVYNNIYDIDKIALWKNIH 78

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDW---PTRHK 637
                  NI H  I K Y   S   C +  Y ++    L +   +    +          
Sbjct: 79  -------NIDHLGIPKYYGCGSFKRCRMY-YRFILLEKLVENTKEIFKRIKCKNKKLIKN 130

Query: 638 IAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK---- 692
           I   +   L Y+H HG    I H DIK  NI++D N +  + D+GIA      G      
Sbjct: 131 IMKDMLTTLEYIHEHG----ISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYS 186

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                +  GT  Y   +    +  T + D+ S G  +++   G K     FG N N+I+
Sbjct: 187 KEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKW-AGIKLPWKGFGHNGNLIH 244

Length = 294

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 23/156 (14%)

Query: 530 EKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
               +  G +  VY +     + V   K+   R K               + EV  L  +
Sbjct: 2   SIKLLKGGLTNRVYLLGTKDEDYVL--KINPSREK-----------GADREREVAILQLL 48

Query: 590 RHKNIV--KLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
             K +   K+     S   + L+ E++  G   D     +   +      IA  +A+ LA
Sbjct: 49  ARKGLPVPKVLASGESDGWSYLLMEWIE-GETLD----EVSEEEKE---DIAEQLAELLA 100

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
            LH   L  + H D+   NIL+D      + D+  A
Sbjct: 101 KLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYA 136

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	840
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.98
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.98
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.98
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.97
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.97
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.97
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.97
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.97
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.97
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.97
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.97
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.97
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.97
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.97
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.97
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.96
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.96
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.96
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG1152	772	consensus Signal transduction serine/threonine kin	99.96
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.95
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.95
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.95
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.94
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.94
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.94
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.92
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.9
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.89
PRK09188	365	serine/threonine protein kinase; Provisional	99.89
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.88
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.87
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.86
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.85
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.82
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.82
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.82
PRK12274	218	serine/threonine protein kinase; Provisional	99.79
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.79
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.74
PRK10345	210	hypothetical protein; Provisional	99.72
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.72
PRK14879	211	serine/threonine protein kinase; Provisional	99.72
smart00090	237	RIO RIO-like kinase.	99.7
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.68
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.68
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.68
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.65
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.61
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.58
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.57
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.55
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.54
PLN03150	623	hypothetical protein; Provisional	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.46
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.46
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.44
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.41
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.37
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.3
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.26
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.23
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.22
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.18
KOG3087	229	consensus Serine/threonine protein kinase [General	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.11
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.09
KOG1243	690	consensus Protein kinase [General function predict	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
PLN03150	623	hypothetical protein; Provisional	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.01
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.97
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.91
COG4248	637	Uncharacterized protein with protein kinase and he	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.79
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.62
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.59
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.55
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.53
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.5

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.6e-94  Score=887.78  Aligned_cols=773  Identities=32%  Similarity=0.545  Sum_probs=549.5

Q ss_pred             ccccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccc
Q 003199            2 SFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCAL   80 (840)
Q Consensus         2 ~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l   80 (840)
                      +.|.++|.+|. |+.+++|++|+|++|.+.+.+|..+.++++|++|+|++|   .+....+..+.++++|++|+|++|.+
T Consensus       148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN---QLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC---CCcCcCChHHcCcCCccEEECcCCcc
Confidence            34455556664 666777777777777776667777777777777777777   44433445566777777777777777


Q ss_pred             cccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCcc
Q 003199           81 HGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPES  160 (840)
Q Consensus        81 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~  160 (840)
                      .+.+|..++++++|++|+|++|.+.+..|..|..+++|+.|+|++|+ +.+.+|..+.++++|++|+|++|.+.+.+|..
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  303 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK-LSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL  303 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe-eeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence            76777777777777777777777776677777777777777777775 45566667777777777777777777777777


Q ss_pred             ccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCch
Q 003199          161 ILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ  240 (840)
Q Consensus       161 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  240 (840)
                      +..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++..|..++.+++|+
T Consensus       304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~  383 (968)
T PLN00113        304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF  383 (968)
T ss_pred             HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777766777


Q ss_pred             hhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCC------------
Q 003199          241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNA------------  308 (840)
Q Consensus       241 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------------  308 (840)
                      .|++++|.+.+..|..+..+++|+.|++++|++++..|..+..++.|+.|++++|.+++..+..+..+            
T Consensus       384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  463 (968)
T PLN00113        384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK  463 (968)
T ss_pred             EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence            77777777766667667777777777777777776666666666666666666666665555444444            


Q ss_pred             -----------CCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhc
Q 003199          309 -----------RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSL  377 (840)
Q Consensus       309 -----------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  377 (840)
                                 ++|+.|+|++|++++..|..+.++++|+.|+|++|++++.+|..+.++++|+.|+|++|.+++.+|..|
T Consensus       464 ~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  543 (968)
T PLN00113        464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF  543 (968)
T ss_pred             eeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhH
Confidence                       455566666666666677777778888888888888888888888888889999999999988888888


Q ss_pred             ccccCCCEEECcCccccccCCchhhcc-CCCeEEccCCCCcCcCCcccccC-CCcccccCCCCCccccccCCCCCCCCCC
Q 003199          378 SSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKE-GLVESFSGNPGLCVSVSVNSSDKNFPLC  455 (840)
Q Consensus       378 ~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~~~~-~~~~~~~~n~~~c~~~~~~~~~~~~~~c  455 (840)
                      ..+++|+.|||++|+++|.+|..+..+ .++.+++++|+++|.+|..-... ....++.|||.+|+.....    ..+.|
T Consensus       544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~----~~~~c  619 (968)
T PLN00113        544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTS----GLPPC  619 (968)
T ss_pred             hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCcccc----CCCCC
Confidence            889999999999999998888888777 56889999999999888642211 1235688999999864322    12344


Q ss_pred             CCCccccc-cchhhhHHHHHHH-HHHHHHHhhhhhccccc-ccCCCCcccccccCccccccccccchhHHHHHHhcCccC
Q 003199          456 PHTKTRRR-LSSIWAVVTSAVI-IFIGLLLFLKRRFSKQR-AITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKN  532 (840)
Q Consensus       456 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (840)
                      ........ ...++++++++++ +++++++++++|+++.+ +..+.... ......+.  ......+...++...+...+
T Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  696 (968)
T PLN00113        620 KRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDG-TWELQFFD--SKVSKSITINDILSSLKEEN  696 (968)
T ss_pred             ccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc-cccccccc--cccchhhhHHHHHhhCCccc
Confidence            32211111 1222222222222 22222222222222111 11111000 00000000  00111223455667788889


Q ss_pred             eeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEE
Q 003199          533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVY  611 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~  611 (840)
                      .||+|+||.||+|.. .+|..||||++.....              ...+|++++++++|||||+++++|.+....++||
T Consensus       697 ~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------------~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~  762 (968)
T PLN00113        697 VISRGKKGASYKGKSIKNGMQFVVKEINDVNS--------------IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIH  762 (968)
T ss_pred             EEccCCCeeEEEEEECCCCcEEEEEEccCCcc--------------ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEE
Confidence            999999999999976 5789999998843221              1124588899999999999999999999999999


Q ss_pred             eecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCC
Q 003199          612 EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG  691 (840)
Q Consensus       612 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~  691 (840)
                      ||+++|+|.++++    .++|.++..++.|+|+|++|||+.+.++|+||||||+||+++.++.+++. ||.+.....   
T Consensus       763 Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~---  834 (968)
T PLN00113        763 EYIEGKNLSEVLR----NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCT---  834 (968)
T ss_pred             eCCCCCcHHHHHh----cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-ecccccccc---
Confidence            9999999999996    37999999999999999999996555899999999999999999888875 665543211   


Q ss_pred             CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccccc
Q 003199          692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKL  771 (840)
Q Consensus       692 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  771 (840)
                          .....||+.|+|||++.+..++.++|||||||++|||+||+.||....+.......|.+...... .....+++.+
T Consensus       835 ----~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  909 (968)
T PLN00113        835 ----DTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDC-HLDMWIDPSI  909 (968)
T ss_pred             ----CCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCcc-chhheeCccc
Confidence                12236789999999999999999999999999999999999999766655666667765433222 2334445444


Q ss_pred             CCC---cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          772 SGS---FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       772 ~~~---~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      .+.   ..+...++.+++.+||+.||++||+|+||++.|+++..
T Consensus       910 ~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~  953 (968)
T PLN00113        910 RGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASR  953 (968)
T ss_pred             cCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhc
Confidence            322   24566788899999999999999999999999998755

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.7e-50  Score=493.96  Aligned_cols=433  Identities=38%  Similarity=0.550  Sum_probs=263.8

Q ss_pred             ccccccccCCC--CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc
Q 003199            2 SFMYLTGTLPD--FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA   79 (840)
Q Consensus         2 ~~~~~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~   79 (840)
                      +.|.++|.+|.  |.++++|++|+|++|.+++.+|.  +.+++|++|+|++|   .+....+..+..+++|++|+|++|.
T Consensus       101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n---~~~~~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113        101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN---MLSGEIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC---cccccCChHHhcCCCCCEEECccCc
Confidence            45566666664  44666666666666666555543  33555555555555   3332233345555555555555555


Q ss_pred             ccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCc
Q 003199           80 LHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPE  159 (840)
Q Consensus        80 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  159 (840)
                      +.+.+|..++++++|++|+|++|.+.+.+|..+..+++|+.|+|++|+ +.+.+|..+.++++|++|+|++|.+++..|.
T Consensus       176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence            555555555555555555555555555555555555555555555554 3344555555555555555555555555555


Q ss_pred             cccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCc
Q 003199          160 SILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKL  239 (840)
Q Consensus       160 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  239 (840)
                      .|..+++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+.+|..+.++++|+.|++++|.+.+..|..++.+++|
T Consensus       255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  334 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL  334 (968)
T ss_pred             hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence            55555555555555555554445555555555555555555554455445555555555555555554444444445555


Q ss_pred             hhhhcccccccccCC------------------------cccccccCCceEEeeCceeeccCCccccCCCcccEEeccCC
Q 003199          240 QYFLVLQNMFSGVLP------------------------DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYN  295 (840)
Q Consensus       240 ~~L~l~~n~~~~~~~------------------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N  295 (840)
                      +.|++++|.+.+.+|                        ..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n  414 (968)
T PLN00113        335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN  414 (968)
T ss_pred             CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence            555555555444444                        44444445555555555555555555555666666666666


Q ss_pred             cccccCCcccCCCCCCceeecccceeeeccchhhcccC-----------------------cccEEEcCCCccCCCCCCc
Q 003199          296 SFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI-----------------------SLVKIDLSDNLLSGPIPSG  352 (840)
Q Consensus       296 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-----------------------~L~~L~Ls~N~l~~~~p~~  352 (840)
                      ++++..|..|..+++|+.|+|++|.+++.+|..++.++                       +|+.|+|++|++++.+|..
T Consensus       415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~  494 (968)
T PLN00113        415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK  494 (968)
T ss_pred             EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh
Confidence            66666666666677777777777766665555444433                       3455566666666667777


Q ss_pred             ccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCCCCcCcCCcccccCC--C
Q 003199          353 IGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKEG--L  429 (840)
Q Consensus       353 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~~~~~--~  429 (840)
                      +.++++|+.|+|++|++++.+|..+..+++|++|+|++|.++|.+|..+..+ .++.|++++|+++|.+|..+....  .
T Consensus       495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  574 (968)
T PLN00113        495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV  574 (968)
T ss_pred             hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence            7788888888888888888888888889999999999999999999888887 568899999999999997655432  3


Q ss_pred             cccccCCCCCc
Q 003199          430 VESFSGNPGLC  440 (840)
Q Consensus       430 ~~~~~~n~~~c  440 (840)
                      ...+.+|+..+
T Consensus       575 ~l~ls~N~l~~  585 (968)
T PLN00113        575 QVNISHNHLHG  585 (968)
T ss_pred             EEeccCCccee
Confidence            45677887665

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-49  Score=424.04  Aligned_cols=284  Identities=46%  Similarity=0.744  Sum_probs=241.5

Q ss_pred             ccch-hHHHHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCc
Q 003199          516 RISF-DQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNI  594 (840)
Q Consensus       516 ~~~~-~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni  594 (840)
                      .+++ +...+++.|...+.||+|+||.||+|...+|+.||||++......         . .++|..|++++.+++|||+
T Consensus        64 ~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~---------~-~~eF~~Ei~~ls~l~H~Nl  133 (361)
T KOG1187|consen   64 SFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQ---------G-EREFLNEVEILSRLRHPNL  133 (361)
T ss_pred             eeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCc---------c-hhHHHHHHHHHhcCCCcCc
Confidence            3444 567889999999999999999999999999999999987433211         1 3459999999999999999


Q ss_pred             ceeeeEEecCc-cceEEEeecCCCChHHHhhcCCC-CCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          595 VKLYCYFSSLY-CNLLVYEYMPNGNLWDALHKGLV-HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       595 v~l~~~~~~~~-~~~lV~e~~~~gsL~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      |+++|||.+.+ +.+||||||++|+|.++++.... .++|.+|.+||.++|+||+|||+.+.++||||||||+|||+|++
T Consensus       134 v~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~  213 (361)
T KOG1187|consen  134 VKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDED  213 (361)
T ss_pred             ccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCC
Confidence            99999999988 49999999999999999998765 88999999999999999999999888899999999999999999


Q ss_pred             CCCeeecccchhhhhccCCCCcceecc-cccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCC-CCCcchh
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVI-AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNII  750 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~-~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~-~~~~~~~  750 (840)
                      +++||+|||+|+.....   ....... .||.+|+|||++..+..+.|+|||||||++.|++||+.|.+... .....+.
T Consensus       214 ~~aKlsDFGLa~~~~~~---~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~  290 (361)
T KOG1187|consen  214 FNAKLSDFGLAKLGPEG---DTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLV  290 (361)
T ss_pred             CCEEccCccCcccCCcc---ccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHH
Confidence            99999999999654210   1111222 89999999999999999999999999999999999999887644 3444578


Q ss_pred             hhhhhhhccccchhhhcccccC-CCcH--HHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          751 YWVSIKVDTKEGIMEVLDKKLS-GSFR--DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      .|........ .+.+++|+.+. ..+.  ..+.++..++.+|++.+|.+||+|.||+++|+.+...
T Consensus       291 ~w~~~~~~~~-~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  291 EWAKPLLEEG-KLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             HHHHHHHHCc-chhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            8875544444 68899999986 5554  6788899999999999999999999999999665443

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=2e-46  Score=396.17  Aligned_cols=257  Identities=36%  Similarity=0.507  Sum_probs=210.9

Q ss_pred             ccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc-cce
Q 003199          530 EKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY-CNL  608 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~  608 (840)
                      ..+.||+|+||+||+|.++....||||++......       ... .+.|.+|+.++.+++|||||+++|+|.+.. ..+
T Consensus        45 ~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~-------~~~-~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~  116 (362)
T KOG0192|consen   45 IEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFD-------DES-RKAFRREASLLSRLRHPNIVQFYGACTSPPGSLC  116 (362)
T ss_pred             hhhhcccCCceeEEEEEeCCceeEEEEEecchhcC-------hHH-HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceE
Confidence            34559999999999999995455999998544321       111 778999999999999999999999999987 789


Q ss_pred             EEEeecCCCChHHHhhc-CCCCCChHHHHHHHHHHHHHHHHHhhcCCCC-eEecCCCCCCEEEcCCC-CCeeecccchhh
Q 003199          609 LVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSP-IIHRDIKSTNILLDVNY-QPKVADFGIAKV  685 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~-~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-ivH~Dlk~~Nill~~~~-~~kl~Dfg~a~~  685 (840)
                      +|||||++|+|.++++. ....+++..+..+|.|||+||.|||+   .+ ||||||||+|||++.++ ++||+|||+++.
T Consensus       117 iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~---~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~  193 (362)
T KOG0192|consen  117 IVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHS---EGPIIHRDLKSDNILVDLKGKTLKIADFGLSRE  193 (362)
T ss_pred             EEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc---CCCeeecccChhhEEEcCCCCEEEECCCcccee
Confidence            99999999999999988 36689999999999999999999999   77 99999999999999997 999999999987


Q ss_pred             hhccCCCCcceecccccccccCccccc--cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAY--SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....   .......||+.|||||++.  ...|+.|+||||||+++|||+||+.||.+...  ...             .
T Consensus       194 ~~~~~---~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~--~~~-------------~  255 (362)
T KOG0192|consen  194 KVISK---TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP--VQV-------------A  255 (362)
T ss_pred             ecccc---ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH--HHH-------------H
Confidence            64311   2334478999999999999  56899999999999999999999999986422  111             1


Q ss_pred             hhhcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          764 MEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       764 ~~~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                      ..++....++.. ......+..++.+||..||++||++.+++..|+.+.....
T Consensus       256 ~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~  308 (362)
T KOG0192|consen  256 SAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHIS  308 (362)
T ss_pred             HHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhc
Confidence            222223333332 2356677788889999999999999999999987655444

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-46  Score=374.46  Aligned_cols=254  Identities=29%  Similarity=0.436  Sum_probs=209.0

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.+..+.||+|..|+||++.++ +++.+|+|++....         +....+++.+|++++++++||+||+++|+|....
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~---------~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~  150 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNI---------DPALQKQILRELEILRSCQSPYIVGFYGAFYSNG  150 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccC---------CHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCC
Confidence            3445678999999999999554 79999999984332         2455788999999999999999999999999988


Q ss_pred             -cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 -CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 -~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                       ...++||||++|||.+.+...+ .+++.....|+.+|++||.|||+.  ++||||||||+|||++..|++||||||.++
T Consensus       151 ~~isI~mEYMDgGSLd~~~k~~g-~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskGeVKicDFGVS~  227 (364)
T KOG0581|consen  151 EEISICMEYMDGGSLDDILKRVG-RIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKGEVKICDFGVSG  227 (364)
T ss_pred             ceEEeehhhcCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCCCEEeccccccH
Confidence             4999999999999999998764 699999999999999999999954  899999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+..     .......||..|||||.+.+..|+.++||||||+.++|+.+|+.||.....   ....|...       +.
T Consensus       228 ~lvn-----S~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~---~~~~~~~L-------l~  292 (364)
T KOG0581|consen  228 ILVN-----SIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNP---PYLDIFEL-------LC  292 (364)
T ss_pred             Hhhh-----hhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCC---CCCCHHHH-------HH
Confidence            8753     255678999999999999999999999999999999999999999976411   12222221       12


Q ss_pred             hhcccccCCCcHH-HHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          765 EVLDKKLSGSFRD-EMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       765 ~~~~~~~~~~~~~-~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      .+++...+....+ ...++..++..|+++||.+||+++|+++|=
T Consensus       293 ~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hp  336 (364)
T KOG0581|consen  293 AIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQHP  336 (364)
T ss_pred             HHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcCH
Confidence            2222222222222 445566677799999999999999999874

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.3e-46  Score=373.31  Aligned_cols=260  Identities=26%  Similarity=0.411  Sum_probs=210.9

Q ss_pred             HHHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ..+.|...+.+|+|+||.|-+| ..++|+.||||++.+........   .......+.+|+++|++++|||||++++++.
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~---~~~~~~~v~~EieILkkL~HP~IV~~~d~f~  246 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSR---AIAKTRDVQNEIEILKKLSHPNIVRIKDFFE  246 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccc---cccchhhhHHHHHHHHhcCCCCEEEEeeeee
Confidence            4456778899999999999998 66789999999996655332111   0112344689999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC---CCCeeec
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN---YQPKVAD  679 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~D  679 (840)
                      ..+..|||||||+||+|.+.+-.+. .+.+.....+++|++.|+.|||+   +||+||||||+|||+..+   ..+||+|
T Consensus       247 ~~ds~YmVlE~v~GGeLfd~vv~nk-~l~ed~~K~~f~Qll~avkYLH~---~GI~HRDiKPeNILl~~~~e~~llKItD  322 (475)
T KOG0615|consen  247 VPDSSYMVLEYVEGGELFDKVVANK-YLREDLGKLLFKQLLTAVKYLHS---QGIIHRDIKPENILLSNDAEDCLLKITD  322 (475)
T ss_pred             cCCceEEEEEEecCccHHHHHHhcc-ccccchhHHHHHHHHHHHHHHHH---cCcccccCCcceEEeccCCcceEEEecc
Confidence            9999999999999999999998765 57788889999999999999999   999999999999999765   7799999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCC---CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      ||+|+..    +......+.+|||.|.|||++.+..+   ..+.|+||+||++|-+++|.+||.+...+..-.       
T Consensus       323 FGlAK~~----g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~-------  391 (475)
T KOG0615|consen  323 FGLAKVS----GEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLK-------  391 (475)
T ss_pred             cchhhcc----ccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHH-------
Confidence            9999987    34556778999999999999977643   347899999999999999999998753322100       


Q ss_pred             hccccchhhhccccc---CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          757 VDTKEGIMEVLDKKL---SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                             ..+...++   +..+.....+..+++.+|+..||++|||+.|++++=+
T Consensus       392 -------eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW  439 (475)
T KOG0615|consen  392 -------EQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPW  439 (475)
T ss_pred             -------HHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChh
Confidence                   11111111   2233455667788899999999999999999998754

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-45  Score=386.49  Aligned_cols=254  Identities=28%  Similarity=0.381  Sum_probs=212.1

Q ss_pred             CccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccce
Q 003199          529 TEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  608 (840)
                      ...+.||+|.||+||.|.++....||||.++....           ..+.|.+|+++|++++|++||+++|+|..++..+
T Consensus       209 ~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m-----------~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piy  277 (468)
T KOG0197|consen  209 KLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM-----------SPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIY  277 (468)
T ss_pred             HHHHHhcCCccceEEEEEEcCCCcccceEEecccc-----------ChhHHHHHHHHHHhCcccCeEEEEEEEecCCceE
Confidence            45678999999999999999888999999965432           2467889999999999999999999999988999


Q ss_pred             EEEeecCCCChHHHhhc-CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhh
Q 003199          609 LVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ  687 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~-~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~  687 (840)
                      ||||||+.|+|.++|+. ....+...+.+.++.|||+|++||++   +++|||||.++||||+++..|||+|||+|+...
T Consensus       278 IVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes---~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~  354 (468)
T KOG0197|consen  278 IVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLES---KNYIHRDLAARNILVDEDLVVKISDFGLARLIG  354 (468)
T ss_pred             EEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHh---CCccchhhhhhheeeccCceEEEcccccccccC
Confidence            99999999999999997 45678999999999999999999999   999999999999999999999999999999543


Q ss_pred             ccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          688 ARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       688 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      +  +.........-+..|.|||.+..+.++.|||||||||+||||+| |+.||.+...               .+.+..+
T Consensus       355 d--~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn---------------~ev~~~l  417 (468)
T KOG0197|consen  355 D--DEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSN---------------EEVLELL  417 (468)
T ss_pred             C--CceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCH---------------HHHHHHH
Confidence            3  22333334445678999999999999999999999999999999 9999876311               1111122


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      ......+....++..+.++|..||+.+|++|||++.+...++++...
T Consensus       418 e~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  418 ERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             hccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence            22222344445667788899999999999999999999988876543

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-44  Score=363.17  Aligned_cols=201  Identities=32%  Similarity=0.482  Sum_probs=179.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|...+.||+|+||+||+|+.+ ++..||||.+....-        ..+..+.+..|+++++.++|||||++++++..+
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l--------~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~   81 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKL--------NKKLVELLLSEIKILKELKHPNIVRLLDCIEDD   81 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhcc--------CHHHHHHHHHHHHHHHhcCCcceeeEEEEEecC
Confidence            45777778999999999999654 689999999854421        244567788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC------CCCeee
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN------YQPKVA  678 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~------~~~kl~  678 (840)
                      +..|+|||||+||+|.++++..+ .+++.+++.++.|+|.||++||+   ++||||||||.|||++..      -.+||+
T Consensus        82 ~~i~lVMEyC~gGDLs~yi~~~~-~l~e~t~r~Fm~QLA~alq~L~~---~~IiHRDLKPQNiLLs~~~~~~~~~~LKIA  157 (429)
T KOG0595|consen   82 DFIYLVMEYCNGGDLSDYIRRRG-RLPEATARHFMQQLASALQFLHE---NNIIHRDLKPQNILLSTTARNDTSPVLKIA  157 (429)
T ss_pred             CeEEEEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCcceEEeccCCCCCCCceEEec
Confidence            99999999999999999999876 79999999999999999999999   999999999999999764      457999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCC
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD  742 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  742 (840)
                      |||+|+.+..    .......+|++-|||||++...+|+.|+|+||+|+|+|||++|+.||+..
T Consensus       158 DFGfAR~L~~----~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  158 DFGFARFLQP----GSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             ccchhhhCCc----hhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence            9999999853    34456789999999999999999999999999999999999999999753

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-44  Score=381.10  Aligned_cols=250  Identities=27%  Similarity=0.431  Sum_probs=209.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|+|+.+|++.. .+|+.||+|++.+....       .....+.+.+||++.+.++|||||+++++|++.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~-------k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs   90 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLK-------KPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDS   90 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhc-------CcchHHHHHHHHHHHHhcCCCcEEeeeeEeecC
Confidence            5688899999999999999965 88999999999554322       133456788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...|+|.|+|++++|-.++.+. ..+++.+++.+.+||+.||.|||+   .+|+|||||..|+++++++++||+|||+|.
T Consensus        91 ~nVYivLELC~~~sL~el~Krr-k~ltEpEary~l~QIv~GlkYLH~---~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt  166 (592)
T KOG0575|consen   91 NNVYIVLELCHRGSLMELLKRR-KPLTEPEARYFLRQIVEGLKYLHS---LGIIHRDLKLGNLFLNENMNVKIGDFGLAT  166 (592)
T ss_pred             CceEEEEEecCCccHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHh---cCceecccchhheeecCcCcEEecccceee
Confidence            9999999999999999988854 489999999999999999999999   999999999999999999999999999999


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+..+   .....+.+|||.|+|||++....++..+||||+|||+|-|++|++||+...     +...          ..
T Consensus       167 ~le~~---~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~-----vket----------y~  228 (592)
T KOG0575|consen  167 QLEYD---GERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKT-----VKET----------YN  228 (592)
T ss_pred             eecCc---ccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccch-----HHHH----------HH
Confidence            88642   234557899999999999999999999999999999999999999998531     1111          11


Q ss_pred             hhcccc-cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKK-LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~-~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+.... ..+  ........+|+.+++++||.+|||+++|+.+
T Consensus       229 ~Ik~~~Y~~P--~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  229 KIKLNEYSMP--SHLSAEAKDLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             HHHhcCcccc--cccCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            111111 111  1334455667779999999999999999987

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.5e-45  Score=347.62  Aligned_cols=256  Identities=25%  Similarity=0.344  Sum_probs=205.8

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE-Eec
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY-FSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~-~~~  603 (840)
                      ..|.+.++||+|+||+||++ ...+|..||.|.+.-...        +.+..++...|+.++++++|||||+++++ +.+
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~m--------d~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~   90 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMM--------DAKARQDCVKEISLLKQLNHPNIVQYYAHSFIE   90 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhc--------cHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhc
Confidence            45667788999999999998 567899999998853221        24556788999999999999999999983 444


Q ss_pred             Ccc-ceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCC-eEecCCCCCCEEEcCCCCCeee
Q 003199          604 LYC-NLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSP-IIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       604 ~~~-~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      +.. .++|||||..|+|.+.+..   ....+++.++|+++.|++.||.++|+...++ |+||||||.||+++.+|.+|++
T Consensus        91 ~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLG  170 (375)
T KOG0591|consen   91 DNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLG  170 (375)
T ss_pred             cchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeec
Confidence            444 7899999999999998764   3467999999999999999999999855443 7799999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++.+..   ........+|||.||+||.+.+..|+.||||||+||++|||+.-++||.+.     ++....     
T Consensus       171 DfGL~r~l~s---~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~-----n~~~L~-----  237 (375)
T KOG0591|consen  171 DFGLGRFLSS---KTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD-----NLLSLC-----  237 (375)
T ss_pred             cchhHhHhcc---hhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc-----cHHHHH-----
Confidence            9999998853   333445678999999999999999999999999999999999999999864     222111     


Q ss_pred             cccchhhhcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          759 TKEGIMEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                           .++.....++.+ .....++..++..|+..||+.||+.-.++..+
T Consensus       238 -----~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di  282 (375)
T KOG0591|consen  238 -----KKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDI  282 (375)
T ss_pred             -----HHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHH
Confidence                 112222333333 34566788888899999999999854444444

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-44  Score=356.25  Aligned_cols=252  Identities=25%  Similarity=0.358  Sum_probs=204.8

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||.++. .+++.+|+|++.+.....       ....+...+|..++.+++||.||+++-.|++
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~-------~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt   96 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVE-------KKEVRHTKAERNILSKIKHPFIVKLIYSFQT   96 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhh-------hhhHHHHHHHHHHHHhCCCCcEeeeEEeccc
Confidence            46788899999999999999955 479999999996655321       2345678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .+..|+|+||+.||.|+.+|++.. .+++..++-++..|+.||.|||+   ++||||||||+|||+|.+|+++|+|||++
T Consensus        97 ~~kLylVld~~~GGeLf~hL~~eg-~F~E~~arfYlaEi~lAL~~LH~---~gIiyRDlKPENILLd~~GHi~LtDFgL~  172 (357)
T KOG0598|consen   97 EEKLYLVLDYLNGGELFYHLQREG-RFSEDRARFYLAEIVLALGYLHS---KGIIYRDLKPENILLDEQGHIKLTDFGLC  172 (357)
T ss_pred             CCeEEEEEeccCCccHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHeeecCCCcEEEeccccc
Confidence            999999999999999999999765 79999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +....   ........+||+.|||||++.+..|+.++|.||+|+++|||++|.+||.+.     +...+.+.        
T Consensus       173 k~~~~---~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~-----~~~~~~~~--------  236 (357)
T KOG0598|consen  173 KEDLK---DGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAE-----DVKKMYDK--------  236 (357)
T ss_pred             hhccc---CCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCc-----cHHHHHHH--------
Confidence            86533   233455689999999999999999999999999999999999999999763     11222211        


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC----CHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP----TMNEVVQ  805 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp----s~~evl~  805 (840)
                        +...+......-...+..+++...+..||++|.    ++.+|.+
T Consensus       237 --I~~~k~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~  280 (357)
T KOG0598|consen  237 --ILKGKLPLPPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEEIKR  280 (357)
T ss_pred             --HhcCcCCCCCccCCHHHHHHHHHHhccCHHHhcCCCCChHHhhc
Confidence              111111111111233455667799999999996    4555443

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=5e-43  Score=337.07  Aligned_cols=264  Identities=25%  Similarity=0.362  Sum_probs=208.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+...++|+|+||+||+++.+ +|+.||||+|....        +++...+-..+|++++++++|+|+|.++..|...
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Ese--------dd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrk   73 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESE--------DDPVVKKIALREIRMLKQLKHENLVNLIEVFRRK   73 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCC--------ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhc
Confidence            45677788999999999999655 79999999995433        3355567789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|+|||+. ++.+-++......+.+.+.++++|++.|+.|+|+   ++++||||||+|||++.+|.+|+||||.|+
T Consensus        74 rklhLVFE~~dh-TvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk---~n~IHRDIKPENILit~~gvvKLCDFGFAR  149 (396)
T KOG0593|consen   74 RKLHLVFEYCDH-TVLHELERYPNGVPSELVKKYLYQLLKAIHFCHK---NNCIHRDIKPENILITQNGVVKLCDFGFAR  149 (396)
T ss_pred             ceeEEEeeecch-HHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhh---cCeecccCChhheEEecCCcEEeccchhhH
Confidence            999999999965 5666666666678999999999999999999999   999999999999999999999999999999


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc----
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT----  759 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~----  759 (840)
                      .+...   ....+..+.|+.|.|||.+.+ .+|...+||||+||++.||++|.+-|.+..+  -+...........    
T Consensus       150 ~L~~p---gd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SD--iDQLy~I~ktLG~L~pr  224 (396)
T KOG0593|consen  150 TLSAP---GDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSD--IDQLYLIRKTLGNLIPR  224 (396)
T ss_pred             hhcCC---cchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcch--HHHHHHHHHHHcccCHH
Confidence            98642   334556678999999999987 6899999999999999999999998876422  1111111111100    


Q ss_pred             -------cc-----chhhhccc-ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 -------KE-----GIMEVLDK-KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 -------~~-----~~~~~~~~-~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                             ..     .+.+..+. .+...++....-+++++..|++.||++|++.+|++.+
T Consensus       225 hq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H  284 (396)
T KOG0593|consen  225 HQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHH  284 (396)
T ss_pred             HHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcC
Confidence                   00     00000011 1122333445567899999999999999999998865

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-42  Score=377.95  Aligned_cols=259  Identities=27%  Similarity=0.389  Sum_probs=214.1

Q ss_pred             hcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      +....+.||+|+||+||+|...      +.+.||||.++...         ..+..++|++|++.++.++|||||+++|.
T Consensus       487 ~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a---------~~~~~~dF~REaeLla~l~H~nIVrLlGV  557 (774)
T KOG1026|consen  487 DIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKA---------ENQARQDFRREAELLAELQHPNIVRLLGV  557 (774)
T ss_pred             heeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccc---------cHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence            3445678999999999998553      34679999985443         34567899999999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCC-------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCE
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGL-------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNI  667 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~-------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Ni  667 (840)
                      |.+.+..++|+|||..|||.++|....             ..++..+.+.||.|||.|++||-+   +.+|||||..+|+
T Consensus       558 C~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~---~~FVHRDLATRNC  634 (774)
T KOG1026|consen  558 CREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSS---HHFVHRDLATRNC  634 (774)
T ss_pred             EccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---Ccccccchhhhhc
Confidence            999999999999999999999997432             127888999999999999999999   9999999999999


Q ss_pred             EEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCC
Q 003199          668 LLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDN  746 (840)
Q Consensus       668 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~  746 (840)
                      ||.++..|||+|||+++.....+. ........-..+|||||.+..++|+.+||||||||+|||+++ |+.||.+.-+  
T Consensus       635 LVge~l~VKIsDfGLsRdiYssDY-Yk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn--  711 (774)
T KOG1026|consen  635 LVGENLVVKISDFGLSRDIYSSDY-YKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSN--  711 (774)
T ss_pred             eeccceEEEecccccchhhhhhhh-hcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccch--
Confidence            999999999999999988754322 222223345689999999999999999999999999999999 9999976321  


Q ss_pred             cchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                                   .+.+..+-+..+-+..+..+.++..|+..||+..|.+||+++||-..|+.....
T Consensus       712 -------------~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~  765 (774)
T KOG1026|consen  712 -------------QEVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQA  765 (774)
T ss_pred             -------------HHHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence                         111222333444455567788899999999999999999999999999876543

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-42  Score=355.23  Aligned_cols=254  Identities=28%  Similarity=0.417  Sum_probs=209.2

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  603 (840)
                      .+|...+.||.|+|++|++| +..+++++|||++.+..       .-.....+.+..|-.+|.++ .||.|++++..|.+
T Consensus        73 ~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~-------Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD  145 (604)
T KOG0592|consen   73 NDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRY-------IIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQD  145 (604)
T ss_pred             hhcchhheeccccceeEEEeeecCCCceeeHhhhhHHH-------HHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeec
Confidence            56778899999999999999 55689999999984332       11233456778899999999 79999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....|+|+||+++|+|.+++.+.+ .+++..++.++.+|+.||+|||+   +|||||||||+|||+|++|+++|+|||.|
T Consensus       146 ~~sLYFvLe~A~nGdll~~i~K~G-sfde~caR~YAAeIldAleylH~---~GIIHRDlKPENILLd~dmhikITDFGsA  221 (604)
T KOG0592|consen  146 EESLYFVLEYAPNGDLLDLIKKYG-SFDETCARFYAAEILDALEYLHS---NGIIHRDLKPENILLDKDGHIKITDFGSA  221 (604)
T ss_pred             ccceEEEEEecCCCcHHHHHHHhC-cchHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeEcCCCcEEEeecccc
Confidence            999999999999999999999876 79999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCC----------CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          684 KVLQARGGK----------DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       684 ~~~~~~~~~----------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      +.+.+....          ......++||..|.+||++.....++++|+|+||||+|+|+.|++||.+..    .+..+.
T Consensus       222 K~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~N----eyliFq  297 (604)
T KOG0592|consen  222 KILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAAN----EYLIFQ  297 (604)
T ss_pred             ccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCcccc----HHHHHH
Confidence            988543211          112256899999999999999999999999999999999999999997631    122211


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ++ +        .++-.+++.+++..   .+|+.+.+..||.+|+++++|.+|
T Consensus       298 kI-~--------~l~y~fp~~fp~~a---~dLv~KLLv~dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  298 KI-Q--------ALDYEFPEGFPEDA---RDLIKKLLVRDPSDRLTSQQIKAH  338 (604)
T ss_pred             HH-H--------HhcccCCCCCCHHH---HHHHHHHHccCccccccHHHHhhC
Confidence            11 1        12233455555444   455669999999999999999877

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.8e-42  Score=352.95  Aligned_cols=267  Identities=29%  Similarity=0.398  Sum_probs=209.3

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..++||+|.||.||+| +..+|+.||+|++.....+        ........+||.+++++.||||+++.+...+.
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~--------~~~~~t~~REI~ILr~l~HpNIikL~eivt~~  188 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEK--------EGFPITAIREIKILRRLDHPNIIKLEEIVTSK  188 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCC--------CcchHHHHHHHHHHHhcCCCcccceeeEEEec
Confidence            45666778999999999999 6678999999998544322        23345677999999999999999999998776


Q ss_pred             --ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          605 --YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       605 --~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                        ...|||+|||+. ||.-++......|++.++..++.|++.||+|+|+   +||+|||||.+|||||.+|.+||+|||+
T Consensus       189 ~~~siYlVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~---~gvlHRDIK~SNiLidn~G~LKiaDFGL  264 (560)
T KOG0600|consen  189 LSGSIYLVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHS---RGVLHRDIKGSNILIDNNGVLKIADFGL  264 (560)
T ss_pred             CCceEEEEEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhh---cCeeeccccccceEEcCCCCEEeccccc
Confidence              678999999965 8888888877899999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCC-----------cchh
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDN-----------KNII  750 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~-----------~~~~  750 (840)
                      |+++...  .....+..+-|..|.|||.+.+. .|+.+.|+||.|||+.||++|++.|++..+..           ....
T Consensus       265 Ar~y~~~--~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~  342 (560)
T KOG0600|consen  265 ARFYTPS--GSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTED  342 (560)
T ss_pred             eeeccCC--CCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChh
Confidence            9988653  33446677889999999998775 69999999999999999999999998753311           1111


Q ss_pred             hhhhhhhccccchhh--hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          751 YWVSIKVDTKEGIME--VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       751 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .|...++........  -....+.+.+.......++|+..++..||.+|.|+.++++.
T Consensus       343 ~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~s  400 (560)
T KOG0600|consen  343 YWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQS  400 (560)
T ss_pred             ccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhcC
Confidence            232111111110000  01111222233344567888889999999999999998865

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-42  Score=360.06  Aligned_cols=262  Identities=29%  Similarity=0.398  Sum_probs=213.8

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+++...+.||+|+||+||+|.|.+  .||||++......        ....+.|+.|+.++++-+|.||+-+.|||..+
T Consensus       391 ~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt--------~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  391 PEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPT--------PEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             HHHhhccceeccccccceeeccccc--ceEEEEEecCCCC--------HHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            3455677899999999999999873  6999999544322        34678999999999999999999999999988


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      .. .||+.||+|-+|+.+++..+..++..+...||.|||+|+.|||.   ++|||||||..||+++++++|||+|||++.
T Consensus       461 ~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHA---K~IIHrDLKSnNIFl~~~~kVkIgDFGLat  536 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHA---KNIIHRDLKSNNIFLHEDLKVKIGDFGLAT  536 (678)
T ss_pred             ce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhh---hhhhhhhccccceEEccCCcEEEeccccee
Confidence            87 99999999999999999988889999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCcccccc---CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ..... ..........|...|||||++..   .+|++.+||||||+++|||+||..||...   .++...|+...   . 
T Consensus       537 vk~~w-~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~---~~dqIifmVGr---G-  608 (678)
T KOG0193|consen  537 VKTRW-SGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQ---NRDQIIFMVGR---G-  608 (678)
T ss_pred             eeeee-ccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCC---ChhheEEEecc---c-
Confidence            65443 22334455568889999999864   36899999999999999999999999832   22223332110   0 


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                          ...+.......+...++.+|+..||..++++||.+.+|+..|+++.+
T Consensus       609 ----~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  609 ----YLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             ----ccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence                01111222223455677788889999999999999999999988776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-43  Score=364.27  Aligned_cols=399  Identities=21%  Similarity=0.217  Sum_probs=350.1

Q ss_pred             CCEEecCCCcCcccCCccccCC--CCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           19 LRRLDLSNNLFTGQFPLSVFNL--TNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        19 L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      -..||++++.+...--..+.++  +.-+.|++++|   ++..+....|.++++|+++.+..|.++ .+|...+...+|+.
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN---kl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~  129 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN---KLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEK  129 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeecccc---ccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeE
Confidence            4678999999884322223332  35567999999   888888889999999999999999998 67877777778999


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCC-cccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecc
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP-EELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN  175 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  175 (840)
                      |+|.+|.|+..-.+.++.++.|+.|||+.|.  ...+| ..|..-.++++|+|++|.|+.+....|..+.+|.+|.|++|
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~--is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSRNL--ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhhch--hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence            9999999998888899999999999999996  33444 45666678999999999999888899999999999999999


Q ss_pred             ccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCc
Q 003199          176 SLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD  255 (840)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  255 (840)
                      +|+..++..|..+++|+.|+|..|+|.-..--.|.++++|+.|.|..|.|+..-...|..+.+++.|+|..|++...-.+
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g  287 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG  287 (873)
T ss_pred             cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence            99999999999999999999999999855567899999999999999999988899999999999999999999999899


Q ss_pred             ccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcc
Q 003199          256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISL  335 (840)
Q Consensus       256 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  335 (840)
                      ++.+++.|+.|++++|.|...-++++...++|+.|+|++|+|+...+..|..+..|++|+|++|++......+|..+.+|
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL  367 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL  367 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence            99999999999999999998889999999999999999999999999999999999999999999997777888899999


Q ss_pred             cEEEcCCCccCCCCCC---cccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhccCCCeEEcc
Q 003199          336 VKIDLSDNLLSGPIPS---GIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFS  412 (840)
Q Consensus       336 ~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~l~l~  412 (840)
                      +.|||++|.|+..+.+   .|.+|++|+.|.|.+|+|..+...+|.++++|++|||.+|.|...-|..|..+.++.|.+.
T Consensus       368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence            9999999999876654   4778999999999999999888889999999999999999999888889988888888887


Q ss_pred             CCCCcCcCCcc
Q 003199          413 NNRLSGPIPLS  423 (840)
Q Consensus       413 ~N~l~~~~p~~  423 (840)
                      .-.+-|.|...
T Consensus       448 SssflCDCql~  458 (873)
T KOG4194|consen  448 SSSFLCDCQLK  458 (873)
T ss_pred             ccceEEeccHH
Confidence            77777766543

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-42  Score=349.37  Aligned_cols=267  Identities=25%  Similarity=0.328  Sum_probs=210.0

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCY  600 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~  600 (840)
                      .+.++|...++||.|.||.||+|+ ..+|+.||||+++.+-..         ...-.-.+|+..++++. ||||+++.+.
T Consensus         7 ~~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s---------~ee~~nLREvksL~kln~hpniikL~Ev   77 (538)
T KOG0661|consen    7 IFMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS---------WEECMNLREVKSLRKLNPHPNIIKLKEV   77 (538)
T ss_pred             hHHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc---------HHHHHHHHHHHHHHhcCCCCcchhhHHH
Confidence            456788999999999999999995 457999999998654322         11223468999999998 9999999999


Q ss_pred             EecCc-cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          601 FSSLY-CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       601 ~~~~~-~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      +.+.+ ..++||||| ..+|++.+..+...+++.++..|+.||.+||+|+|.   +|+.|||+||+|||+.....+||+|
T Consensus        78 i~d~~~~L~fVfE~M-d~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk---~GfFHRDlKPENiLi~~~~~iKiaD  153 (538)
T KOG0661|consen   78 IRDNDRILYFVFEFM-DCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHK---HGFFHRDLKPENILISGNDVIKIAD  153 (538)
T ss_pred             hhccCceEeeeHHhh-hhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHh---cCcccccCChhheEecccceeEecc
Confidence            98888 999999999 679999999888899999999999999999999999   9999999999999999988999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccc-cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      ||+|+.+..    ..+.+..+.|+.|.|||++. .+.|+.+.||||+|||++|+.+-++-|.+..+- ..+.....+...
T Consensus       154 FGLARev~S----kpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~-Dqi~KIc~VLGt  228 (538)
T KOG0661|consen  154 FGLAREVRS----KPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEI-DQIYKICEVLGT  228 (538)
T ss_pred             ccccccccc----CCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHH-HHHHHHHHHhCC
Confidence            999998743    44567788999999999875 567899999999999999999999988764221 111111111100


Q ss_pred             -cccchh--------------hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          759 -TKEGIM--------------EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       759 -~~~~~~--------------~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                       ..+.+.              .+....+..-......+..+++.+|+++||.+||||.|++++-
T Consensus       229 P~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~p  292 (538)
T KOG0661|consen  229 PDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQHP  292 (538)
T ss_pred             CccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcCc
Confidence             000000              0111111111233557788999999999999999999999874

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-42  Score=369.71  Aligned_cols=260  Identities=25%  Similarity=0.327  Sum_probs=218.1

Q ss_pred             CccCeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          529 TEKNKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+.++||.|.||.||+|.++-    ...||||.++....         .+...+|..|+.||.+++||||+++.|.....
T Consensus       632 ~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gyt---------ekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks  702 (996)
T KOG0196|consen  632 KIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYT---------EKQRRDFLSEASIMGQFDHPNIIRLEGVVTKS  702 (996)
T ss_pred             EEEEEEecccccceecccccCCCCcceeEEEeeeccCcc---------HHHHhhhhhhhhhcccCCCCcEEEEEEEEecC
Confidence            356789999999999997752    35799999965442         45578899999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...+||+|||++|+|..+|+.+..++.+.+...+.++||.|+.||.+   +++|||||.++|||++.+..+||+|||+++
T Consensus       703 ~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsd---m~YVHRDLAARNILVNsnLvCKVsDFGLSR  779 (996)
T KOG0196|consen  703 KPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSD---MNYVHRDLAARNILVNSNLVCKVSDFGLSR  779 (996)
T ss_pred             ceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhh---cCchhhhhhhhheeeccceEEEecccccee
Confidence            99999999999999999999998889999999999999999999999   999999999999999999999999999999


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .+.+............-+.+|.|||.+.-++++.+|||||||++|||.++ |..||-+..+               .+-+
T Consensus       780 vledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSN---------------QdVI  844 (996)
T KOG0196|consen  780 VLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN---------------QDVI  844 (996)
T ss_pred             ecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccch---------------HHHH
Confidence            87654322222222233478999999999999999999999999999887 9999865311               1112


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                      ..+.+...-+-..+++..+.+|++.||++|-.+||.+.+|+.+|.++.....
T Consensus       845 kaIe~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~  896 (996)
T KOG0196|consen  845 KAIEQGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPN  896 (996)
T ss_pred             HHHHhccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCch
Confidence            2233333344556788899999999999999999999999999998766554

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=4.7e-41  Score=318.39  Aligned_cols=267  Identities=25%  Similarity=0.364  Sum_probs=209.4

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+++|+|.||.||+| +.++|+.||||+++....+.        .......+||+.++.++|+||+.++++|...
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kd--------Gi~~talREIK~Lqel~h~nIi~LiD~F~~~   73 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKD--------GINRTALREIKLLQELKHPNIIELIDVFPHK   73 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeecccccc--------CccHHHHHHHHHHHHccCcchhhhhhhccCC
Confidence            35677789999999999999 66789999999997654321        1234567899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..-+|+|||+ .+|...++.....+...++..++.++.+|++|||+   +.|+||||||.|+|++++|.+||+|||+|+
T Consensus        74 ~~l~lVfEfm~-tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~---~~IlHRDlKPnNLLis~~g~lKiADFGLAr  149 (318)
T KOG0659|consen   74 SNLSLVFEFMP-TDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHS---KWILHRDLKPNNLLISSDGQLKIADFGLAR  149 (318)
T ss_pred             CceEEEEEecc-ccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHh---hhhhcccCCccceEEcCCCcEEeecccchh
Confidence            99999999995 59999999888789999999999999999999999   999999999999999999999999999999


Q ss_pred             hhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCC-----------cchhhh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDN-----------KNIIYW  752 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~-----------~~~~~~  752 (840)
                      .+...   .......+-|..|.|||.+.+. .|+...||||.|||+.||+-|.+-|.+..+-+           .....|
T Consensus       150 ~f~~p---~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~W  226 (318)
T KOG0659|consen  150 FFGSP---NRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQW  226 (318)
T ss_pred             ccCCC---CcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccC
Confidence            98653   2333344789999999998775 68999999999999999999887666542211           111112


Q ss_pred             hhhh-hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          753 VSIK-VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       753 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      -.+. ..+...+...-.+....-+.....+.++++..++..||.+|++++|++++=
T Consensus       227 P~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~  282 (318)
T KOG0659|consen  227 PEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKHP  282 (318)
T ss_pred             ccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcch
Confidence            1111 011111111111112223445566779999999999999999999999874

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-40  Score=337.72  Aligned_cols=272  Identities=28%  Similarity=0.396  Sum_probs=211.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..+.||.|..++||+|.. ..++.||||++..++..         ...+.+.+|+..|+.++||||++.+..|..+
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~---------~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~   96 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCN---------NDLDALRKEVQTMSLIDHPNIVTYHCSFVVD   96 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhh---------hhHHHHHHHHHHhhhcCCCCcceEEEEEEec
Confidence            4677888999999999999954 57899999999554422         2257899999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...|+||.||.+||+.+.+... ...+++..+..|.+++++||.|||+   +|.||||||+.|||++++|.+||+|||.+
T Consensus        97 ~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~---~G~IHRdvKAgnILi~~dG~VkLadFgvs  173 (516)
T KOG0582|consen   97 SELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQ---NGHIHRDVKAGNILIDSDGTVKLADFGVS  173 (516)
T ss_pred             ceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHh---cCceecccccccEEEcCCCcEEEcCceee
Confidence            9999999999999999998765 3468999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcce-ecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          684 KVLQARGGKDSTT-TVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       684 ~~~~~~~~~~~~~-~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ..+.+.+...... ....||+.|||||++..  ..|+.|+||||||+...|+.+|..||.....-. -+.  ....-...
T Consensus       174 a~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmk-vLl--~tLqn~pp  250 (516)
T KOG0582|consen  174 ASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMK-VLL--LTLQNDPP  250 (516)
T ss_pred             eeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHH-HHH--HHhcCCCC
Confidence            7776654333333 56789999999999644  469999999999999999999999998642110 000  00000000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcCCCCC
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEADPCRF  815 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~~~~~  815 (840)
                      .......+.   +........+.+++..|+++||++|||+++++++  +.....+.+
T Consensus       251 ~~~t~~~~~---d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~k~~~~  304 (516)
T KOG0582|consen  251 TLLTSGLDK---DEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKAKSKEY  304 (516)
T ss_pred             CcccccCCh---HHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhccchhh
Confidence            000000010   0112223466778889999999999999999986  455444443

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-41  Score=344.27  Aligned_cols=257  Identities=30%  Similarity=0.449  Sum_probs=200.2

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .+...+.||+|+||+||++... +|+..|||.......         .. .+.+.+|+.++++++|||||+.+|......
T Consensus        18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~---------~~-~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~   87 (313)
T KOG0198|consen   18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDS---------PT-SESLEREIRILSRLNHPNIVQYYGSSSSRE   87 (313)
T ss_pred             hhhhhccccCccceEEEEEEecCCCcceeeeeeecccc---------hh-HHHHHHHHHHHHhCCCCCEEeeCCcccccc
Confidence            3456778999999999999665 599999998743310         11 567899999999999999999999855544


Q ss_pred             --cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-CCCCeeecccc
Q 003199          606 --CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVADFGI  682 (840)
Q Consensus       606 --~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~Dfg~  682 (840)
                        .+++.|||+++|+|.+++.+.+..++++.+..+..||++||+|||+   +|||||||||+|||++. ++.+||+|||+
T Consensus        88 ~~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs---~g~vH~DiK~~NiLl~~~~~~~KlaDFG~  164 (313)
T KOG0198|consen   88 NDEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHS---KGIVHCDIKPANILLDPSNGDVKLADFGL  164 (313)
T ss_pred             CeeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCcccceEEEeCCCCeEEeccCcc
Confidence              5889999999999999999865479999999999999999999999   99999999999999999 79999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ++................||+.|||||++..+ ....++||||+||++.||+||+.||......    ..+.   .....
T Consensus       165 a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~----~~~~---~~ig~  237 (313)
T KOG0198|consen  165 AKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEE----AEAL---LLIGR  237 (313)
T ss_pred             ccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcch----HHHH---HHHhc
Confidence            98765322223344567899999999999853 3446999999999999999999999752100    0010   00000


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                         .-..+.++..   ...+..+++.+|+..||++||||.+++++--.
T Consensus       238 ---~~~~P~ip~~---ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~  279 (313)
T KOG0198|consen  238 ---EDSLPEIPDS---LSDEAKDFLRKCFKRDPEKRPTAEELLEHPFL  279 (313)
T ss_pred             ---cCCCCCCCcc---cCHHHHHHHHHHhhcCcccCcCHHHHhhChhh
Confidence               0011123333   33445556669999999999999999998643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-42  Score=360.57  Aligned_cols=368  Identities=22%  Similarity=0.242  Sum_probs=337.5

Q ss_pred             CCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCccccccc-ccccEEEecCccccccCCccccCCCCCcE
Q 003199           18 NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRL-TKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      +-++||||+|.+..+-+..|.++++|+++++..|   .++.+|.  |... .+|+.|+|.+|.|.++-...+..++.|+.
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N---~Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs  153 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN---ELTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRS  153 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccc---hhhhccc--ccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence            4567999999999999999999999999999999   7777775  4544 56999999999999888889999999999


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccc
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS  176 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  176 (840)
                      |||+.|.|+...-..|..-.++++|+|++|+ +...-.+.|.++.+|..|.|++|+|+...+..|++|++|+.|+|..|+
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            9999999996666789999999999999998 555556789999999999999999998888999999999999999999


Q ss_pred             cccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcc
Q 003199          177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS  256 (840)
Q Consensus       177 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  256 (840)
                      |.-...-.|.++++|+.|.|..|.|.......|..+.++++|+|+.|++...-..++.++.+|+.|++++|.|..+.++.
T Consensus       233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence            98555778999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccc---hhhcccC
Q 003199          257 LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP---SEIYRAI  333 (840)
Q Consensus       257 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~  333 (840)
                      ..-+++|++|+|++|+|+...+..|..+..|+.|.|++|+++..-..+|..+++|+.|+|++|.|...+.   ..|..++
T Consensus       313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~  392 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP  392 (873)
T ss_pred             hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence            9999999999999999998888899999999999999999999888999999999999999999987654   3577799


Q ss_pred             cccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCcc
Q 003199          334 SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNL  392 (840)
Q Consensus       334 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  392 (840)
                      +|+.|+|.+|+|..+.-.+|.++..|+.|||.+|.|.++.|++|..+ +|++|.+..-.
T Consensus       393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence            99999999999996666689999999999999999999999999999 89999876533

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-41  Score=348.37  Aligned_cols=250  Identities=30%  Similarity=0.494  Sum_probs=206.4

Q ss_pred             hcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      .+.+++-||+|+.|.||.|++. ++.||||+++.-                 -..+|+.+++++|+||+.|.|.|....+
T Consensus       125 ~IsELeWlGSGaQGAVF~Grl~-netVAVKKV~el-----------------kETdIKHLRkLkH~NII~FkGVCtqsPc  186 (904)
T KOG4721|consen  125 EISELEWLGSGAQGAVFLGRLH-NETVAVKKVREL-----------------KETDIKHLRKLKHPNIITFKGVCTQSPC  186 (904)
T ss_pred             HhhhhhhhccCcccceeeeecc-CceehhHHHhhh-----------------hhhhHHHHHhccCcceeeEeeeecCCce
Confidence            3455677999999999999998 799999987322                 2347889999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      ++||||||..|-|+..|..+. .+.-.....|..+||.|+.|||.   +.|||||||.-||||..+..+||+|||-++..
T Consensus       187 yCIiMEfCa~GqL~~VLka~~-~itp~llv~Wsk~IA~GM~YLH~---hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~  262 (904)
T KOG4721|consen  187 YCIIMEFCAQGQLYEVLKAGR-PITPSLLVDWSKGIAGGMNYLHL---HKIIHRDLKSPNILISYDDVVKISDFGTSKEL  262 (904)
T ss_pred             eEEeeeccccccHHHHHhccC-ccCHHHHHHHHHHhhhhhHHHHH---hhHhhhccCCCceEeeccceEEeccccchHhh
Confidence            999999999999999998875 57777888999999999999999   99999999999999999999999999999877


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh-h
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM-E  765 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~  765 (840)
                      .+    ......++||..|||||++.+...++|+||||||||||||+||..||.+.   +.....|-         +. +
T Consensus       263 ~~----~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdV---dssAIIwG---------VGsN  326 (904)
T KOG4721|consen  263 SD----KSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDV---DSSAIIWG---------VGSN  326 (904)
T ss_pred             hh----hhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCcccc---chheeEEe---------ccCC
Confidence            54    24455688999999999999999999999999999999999999999763   11122221         11 1


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCC
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFES  817 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~  817 (840)
                      .+.-   +-...++..+.-|+++||+..|..||++.+++.||.-+.+.-+..
T Consensus       327 sL~L---pvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa~pell~~  375 (904)
T KOG4721|consen  327 SLHL---PVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIASPELLST  375 (904)
T ss_pred             cccc---cCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCHHHhcc
Confidence            1111   112233445556777999999999999999999998877665543

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-40  Score=319.95  Aligned_cols=237  Identities=30%  Similarity=0.420  Sum_probs=198.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||.|+||+|..++.+ +|..+|+|++....       .-..+..+...+|..+++.+.||.++++++.+.+.
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~-------vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~  116 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQK-------VVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDN  116 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHH-------HHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccC
Confidence            45667788999999999999655 68999999985443       22345567889999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...+|||||++||-|+.++++.+ +++++.++-+|.+|+.|++|||+   .+|++||+||+|||+|++|.+||+|||.|+
T Consensus       117 ~~lymvmeyv~GGElFS~Lrk~~-rF~e~~arFYAAeivlAleylH~---~~iiYRDLKPENiLlD~~G~iKitDFGFAK  192 (355)
T KOG0616|consen  117 SNLYMVMEYVPGGELFSYLRKSG-RFSEPHARFYAAEIVLALEYLHS---LDIIYRDLKPENLLLDQNGHIKITDFGFAK  192 (355)
T ss_pred             CeEEEEEeccCCccHHHHHHhcC-CCCchhHHHHHHHHHHHHHHHHh---cCeeeccCChHHeeeccCCcEEEEeccceE
Confidence            99999999999999999999876 79999999999999999999999   999999999999999999999999999999


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+..      .+.+.+|||.|+|||.+....+..++|.|||||++|||+.|.+||.+...    ...+           .
T Consensus       193 ~v~~------rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~----~~iY-----------~  251 (355)
T KOG0616|consen  193 RVSG------RTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP----IQIY-----------E  251 (355)
T ss_pred             EecC------cEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh----HHHH-----------H
Confidence            8643      36678999999999999999999999999999999999999999976422    1111           1


Q ss_pred             hhcccc--cCCCcHHHHHHHHHHHHHccCCCCCCC
Q 003199          765 EVLDKK--LSGSFRDEMIQVLRIAIRCTSKSPATR  797 (840)
Q Consensus       765 ~~~~~~--~~~~~~~~~~~l~~l~~~cl~~dP~~R  797 (840)
                      +++..+  .+..+.   .++.+|+...++.|-.+|
T Consensus       252 KI~~~~v~fP~~fs---~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  252 KILEGKVKFPSYFS---SDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             HHHhCcccCCcccC---HHHHHHHHHHHhhhhHhh
Confidence            122221  222222   344556668888888888

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=9e-41  Score=345.87  Aligned_cols=249  Identities=29%  Similarity=0.387  Sum_probs=207.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||+||||+.+ +.+.||+|.+.+....        .+..+.+.+|++++++++|||||.++++|+..
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~--------~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~   73 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRN--------EKELKNLRQEVRILRSLKHPNIVEMLESFETS   73 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCc--------hHHHHHHHHHHHHHHhcCCcchhhHHHhhccc
Confidence            45666778999999999999554 7899999998443321        34467789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      .+.++|+||+.| +|+.++.... .++++.+..|+.+++.||.|||+   .+|.|||+||.|||++..|++|+||||+|+
T Consensus        74 ~~~~vVte~a~g-~L~~il~~d~-~lpEe~v~~~a~~LVsaL~yLhs---~rilhrd~kPqniLl~~~~~~KlcdFg~Ar  148 (808)
T KOG0597|consen   74 AHLWVVTEYAVG-DLFTILEQDG-KLPEEQVRAIAYDLVSALYYLHS---NRILHRDMKPQNILLEKGGTLKLCDFGLAR  148 (808)
T ss_pred             ceEEEEehhhhh-hHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHh---cCcccccCCcceeeecCCCceeechhhhhh
Confidence            999999999966 9999998875 79999999999999999999999   999999999999999999999999999999


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+..   .....+...|||-|||||...++.|+..+|+||+|||+||+++|++||...     .+...++....      
T Consensus       149 ~m~~---~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~-----si~~Lv~~I~~------  214 (808)
T KOG0597|consen  149 AMST---NTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR-----SITQLVKSILK------  214 (808)
T ss_pred             hccc---CceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH-----HHHHHHHHHhc------
Confidence            8753   445667788999999999999999999999999999999999999999642     11111111111      


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         |+.  .........+..++...+.+||.+|.+-.+++.|
T Consensus       215 ---d~v--~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~H  251 (808)
T KOG0597|consen  215 ---DPV--KPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGH  251 (808)
T ss_pred             ---CCC--CCcccccHHHHHHHHHHhhcChhhcccHHHHhcC
Confidence               111  1112444556667779999999999999999876

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-39  Score=330.70  Aligned_cols=271  Identities=28%  Similarity=0.368  Sum_probs=204.5

Q ss_pred             CccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhc--cCCCCcceeeeEEecCc-
Q 003199          529 TEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN--IRHKNIVKLYCYFSSLY-  605 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~-  605 (840)
                      +..+.||+|.||.||+|++. ++.||||++.             .+..+.|..|-.+.+.  ++|+||++++++-.... 
T Consensus       213 ~l~eli~~Grfg~V~KaqL~-~~~VAVKifp-------------~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~  278 (534)
T KOG3653|consen  213 QLLELIGRGRFGCVWKAQLD-NRLVAVKIFP-------------EQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTA  278 (534)
T ss_pred             hhHHHhhcCccceeehhhcc-CceeEEEecC-------------HHHHHHHHhHHHHHhccCccchhHHHhhchhccCCc
Confidence            34567999999999999988 6999999983             3335667777777655  58999999999876655 


Q ss_pred             ---cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcC------CCCeEecCCCCCCEEEcCCCCCe
Q 003199          606 ---CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL------LSPIIHRDIKSTNILLDVNYQPK  676 (840)
Q Consensus       606 ---~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~------~~~ivH~Dlk~~Nill~~~~~~k  676 (840)
                         .++||+||.+.|+|.++|..+  ..+|....+++..+++||+|||+..      .++|+|||||++|||+..|+++.
T Consensus       279 ~~~eywLVt~fh~kGsL~dyL~~n--tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTcc  356 (534)
T KOG3653|consen  279 DRMEYWLVTEFHPKGSLCDYLKAN--TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCC  356 (534)
T ss_pred             cccceeEEeeeccCCcHHHHHHhc--cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEE
Confidence               789999999999999999987  6899999999999999999999753      45799999999999999999999


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccccCC------CCccccchhHHHHHHHHHhCCCCCC-CCCCCCcch
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK------ATTKCDVYSFGVVLMELITGRKPVE-DDFGDNKNI  749 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~slG~il~el~tg~~p~~-~~~~~~~~~  749 (840)
                      |+|||+|.++... .........+||.+|||||++.+..      .-.+.||||+|.|+|||+++..-+. +..++ -..
T Consensus       357 IaDFGLAl~~~p~-~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~-Yql  434 (534)
T KOG3653|consen  357 IADFGLALRLEPG-KPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPE-YQL  434 (534)
T ss_pred             eeccceeEEecCC-CCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc-ccC
Confidence            9999999888642 2233344588999999999987642      2347899999999999999754332 11110 000


Q ss_pred             hhhhhh-hhccccch-hhhcccccCCCcHHH------HHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCC
Q 003199          750 IYWVSI-KVDTKEGI-MEVLDKKLSGSFRDE------MIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFES  817 (840)
Q Consensus       750 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~------~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~  817 (840)
                      ..-... ....-+.+ ..++.++.++.+++.      +..+.+.+-.||+.||+.|.|+.=+-+.++++...+..+
T Consensus       435 pfe~evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~~~  510 (534)
T KOG3653|consen  435 PFEAEVGNHPTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWEDS  510 (534)
T ss_pred             chhHHhcCCCCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCCcc
Confidence            000000 01111112 224444555555433      455778888999999999999999999998887777653

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-40  Score=348.37  Aligned_cols=251  Identities=27%  Similarity=0.399  Sum_probs=205.5

Q ss_pred             HHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ...|+...+||+|+.|.||.| +..+++.||||++....          ....+-+.+|+.+|+..+|+|||.++..|..
T Consensus       272 ~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~----------Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv  341 (550)
T KOG0578|consen  272 RSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRK----------QPKKELLLNEILVMRDLHHPNIVNFLDSYLV  341 (550)
T ss_pred             hhhhcchhhhccccccceeeeeeccCCceEEEEEEEecc----------CCchhhhHHHHHHHHhccchHHHHHHHHhcc
Confidence            456777789999999999999 55678999999984433          2234668899999999999999999999988


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .+..|.|||||++|+|.+.+...  .+++.++..|++++++||+|||.   ++|+|||||.+|||++.+|.+||+|||++
T Consensus       342 ~deLWVVMEym~ggsLTDvVt~~--~~~E~qIA~Icre~l~aL~fLH~---~gIiHrDIKSDnILL~~~g~vKltDFGFc  416 (550)
T KOG0578|consen  342 GDELWVVMEYMEGGSLTDVVTKT--RMTEGQIAAICREILQGLKFLHA---RGIIHRDIKSDNILLTMDGSVKLTDFGFC  416 (550)
T ss_pred             cceeEEEEeecCCCchhhhhhcc--cccHHHHHHHHHHHHHHHHHHHh---cceeeeccccceeEeccCCcEEEeeeeee
Confidence            89999999999999999999876  58999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ..+..   ........+|||.|||||+.....|++|.||||||++.+||+.|++||-.+..-.   ..|.   +....  
T Consensus       417 aqi~~---~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~Plr---AlyL---Ia~ng--  485 (550)
T KOG0578|consen  417 AQISE---EQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR---ALYL---IATNG--  485 (550)
T ss_pred             ecccc---ccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHH---HHHH---HhhcC--
Confidence            87754   2235567889999999999999999999999999999999999999996421111   1111   00000  


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                          .+++ .........+.+++.+|++.||++|++++|+++|
T Consensus       486 ----~P~l-k~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  486 ----TPKL-KNPEKLSPELKDFLDRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             ----CCCc-CCccccCHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence                0011 1122334456667779999999999999999987

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-40  Score=374.88  Aligned_cols=258  Identities=26%  Similarity=0.365  Sum_probs=208.5

Q ss_pred             hcCccCeeeccCCcEEEEEEeCC--Cc----EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNS--GE----VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~--~~----~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ..+..+.||+|+||.||+|.+.+  |.    .||||.+....         ..+...+|.+|..+|+.++|||||+++|.
T Consensus       693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~---------~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv  763 (1025)
T KOG1095|consen  693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLS---------SEQEVSDFLKEALLMSKFDHPNIVSLIGV  763 (1025)
T ss_pred             heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccC---------CHHHHHHHHHHHHHHhcCCCcceeeEEEe
Confidence            34456789999999999997653  43    38888874332         24557889999999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcC------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKG------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      |.+....++++|||++|+|..+|++.      ...+...+...++.|||+|+.||++   +++|||||.++|+|++....
T Consensus       764 ~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~---~~fvHRDLAaRNCLL~~~r~  840 (1025)
T KOG1095|consen  764 CLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLES---KHFVHRDLAARNCLLDERRV  840 (1025)
T ss_pred             ecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHh---CCCcCcchhhhheeecccCc
Confidence            99999999999999999999999987      5678899999999999999999999   99999999999999999999


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~  753 (840)
                      |||+|||+|+.+.+.... .......-..+|||||.+..+.++.|+|||||||++||++| |..||.+...  ...    
T Consensus       841 VKIaDFGlArDiy~~~yy-r~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n--~~v----  913 (1025)
T KOG1095|consen  841 VKIADFGLARDIYDKDYY-RKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSN--FEV----  913 (1025)
T ss_pred             EEEcccchhHhhhhchhe-eccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcch--HHH----
Confidence            999999999965442211 11111244579999999999999999999999999999999 9999976311  111    


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                               +..+......+....+...+.+++.+||+.+|++||++..+++.+..+.+
T Consensus       914 ---------~~~~~~ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~  963 (1025)
T KOG1095|consen  914 ---------LLDVLEGGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISN  963 (1025)
T ss_pred             ---------HHHHHhCCccCCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhh
Confidence                     11122222222233456678899999999999999999999998876543

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-40  Score=351.10  Aligned_cols=260  Identities=26%  Similarity=0.327  Sum_probs=207.2

Q ss_pred             ccCeeeccCCcEEEEEEeCC--C--cE-EEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          530 EKNKVGQGGSGTVYKIDLNS--G--EV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~~~~--~--~~-vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ..++||+|+||.||+|.++.  +  .. ||||..+...       .......++|.+|+++|+.++|||||+++|++...
T Consensus       161 l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~-------~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~  233 (474)
T KOG0194|consen  161 LGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSS-------ELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLE  233 (474)
T ss_pred             ccceeecccccEEEEEEEEecCCceeeeeEEEeecccc-------cccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCC
Confidence            44789999999999996653  2  23 8999885421       12245578899999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|||+|+||+|.++|.+....++..++..++.+.|+||+|||+   ++++||||.++|+|++.++.+||+|||+++
T Consensus       234 ~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~---k~~IHRDIAARNcL~~~~~~vKISDFGLs~  310 (474)
T KOG0194|consen  234 EPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHS---KNCIHRDIAARNCLYSKKGVVKISDFGLSR  310 (474)
T ss_pred             CccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHH---CCCcchhHhHHHheecCCCeEEeCcccccc
Confidence            99999999999999999999987679999999999999999999999   999999999999999999999999999986


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .-..   .........-+.+|+|||.+....|++++|||||||++||+++ |..||.+....        ..       .
T Consensus       311 ~~~~---~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~--------~v-------~  372 (474)
T KOG0194|consen  311 AGSQ---YVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNY--------EV-------K  372 (474)
T ss_pred             CCcc---eeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHH--------HH-------H
Confidence            5320   1111112234579999999999999999999999999999999 89999864211        00       1


Q ss_pred             hhh-cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCC
Q 003199          764 MEV-LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFES  817 (840)
Q Consensus       764 ~~~-~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~  817 (840)
                      ..+ .+....+.....+..+..++.+||..+|+.||+|.++.+.++.+......+
T Consensus       373 ~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~~~  427 (474)
T KOG0194|consen  373 AKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKEAF  427 (474)
T ss_pred             HHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhccccc
Confidence            111 111111112234455666777999999999999999999999887776654

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-39  Score=346.39  Aligned_cols=256  Identities=27%  Similarity=0.387  Sum_probs=205.8

Q ss_pred             HHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~  602 (840)
                      ...|...+.||+|+||+|+.| ...+|+.||||++.......    .. ....+.+.+|+.++++++ ||||++++.++.
T Consensus        16 ~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~----~~-~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~   90 (370)
T KOG0583|consen   16 IGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSS----KS-QKLDELIKREISILRRLRSHPNIIRLLEVFA   90 (370)
T ss_pred             cCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccc----cc-cccchhhHHHHHHHHHhccCCCEeEEEEEEe
Confidence            456788899999999999999 55578999999664432110    01 123455668999999998 999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC-CCCeeeccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFG  681 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl~Dfg  681 (840)
                      .....++||||+.+|+|.+++.. ...+.+.++..++.|++.|++|+|+   +||+||||||+||+++.+ +.+||+|||
T Consensus        91 t~~~~~ivmEy~~gGdL~~~i~~-~g~l~E~~ar~~F~Qlisav~y~H~---~gi~HRDLK~ENilld~~~~~~Kl~DFG  166 (370)
T KOG0583|consen   91 TPTKIYIVMEYCSGGDLFDYIVN-KGRLKEDEARKYFRQLISAVAYCHS---RGIVHRDLKPENILLDGNEGNLKLSDFG  166 (370)
T ss_pred             cCCeEEEEEEecCCccHHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEecCCCCCEEEeccc
Confidence            99999999999999999999998 4478999999999999999999999   999999999999999999 999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCC-CC-ccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK-AT-TKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~-~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ++....   ..+......+||+.|+|||++.+.. |+ .++||||+||+||.|++|+.||++..     ...........
T Consensus       167 ~s~~~~---~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~-----~~~l~~ki~~~  238 (370)
T KOG0583|consen  167 LSAISP---GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN-----VPNLYRKIRKG  238 (370)
T ss_pred             cccccC---CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc-----HHHHHHHHhcC
Confidence            998763   2344566789999999999999877 75 78999999999999999999998631     11111111111


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ..        .++....  ..++..++.+|+..||.+|+++.+++.+=
T Consensus       239 ~~--------~~p~~~~--S~~~~~Li~~mL~~~P~~R~t~~~i~~h~  276 (370)
T KOG0583|consen  239 EF--------KIPSYLL--SPEARSLIEKMLVPDPSTRITLLEILEHP  276 (370)
T ss_pred             Cc--------cCCCCcC--CHHHHHHHHHHcCCCcccCCCHHHHhhCh
Confidence            10        1122221  55677788899999999999999999553

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=1.7e-39  Score=352.45  Aligned_cols=260  Identities=27%  Similarity=0.369  Sum_probs=200.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|..      .+++.||||++.....         ....+.+.+|+.++..+ +||||++++
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~~h~niv~~~   77 (338)
T cd05102           7 DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGAT---------ASEHKALMSELKILIHIGNHLNVVNLL   77 (338)
T ss_pred             hHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccc---------hHHHHHHHHHHHHHHHhccCcceeeEE
Confidence            5678889999999999999953      2356899998853221         12345688999999999 899999999


Q ss_pred             eEEecCc-cceEEEeecCCCChHHHhhcCC--------------------------------------------------
Q 003199          599 CYFSSLY-CNLLVYEYMPNGNLWDALHKGL--------------------------------------------------  627 (840)
Q Consensus       599 ~~~~~~~-~~~lV~e~~~~gsL~~~l~~~~--------------------------------------------------  627 (840)
                      ++|.... ..++||||+++|+|.+++....                                                  
T Consensus        78 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T cd05102          78 GACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGST  157 (338)
T ss_pred             eEecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCccc
Confidence            9887644 5789999999999999886531                                                  


Q ss_pred             -----------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcce
Q 003199          628 -----------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT  696 (840)
Q Consensus       628 -----------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  696 (840)
                                 ..+++.++..++.|+++||+|||+   ++|+||||||+||+++.++.+||+|||+++...... .....
T Consensus       158 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~-~~~~~  233 (338)
T cd05102         158 NPPQETDDLWKSPLTMEDLICYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDP-DYVRK  233 (338)
T ss_pred             ccchhccccccCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCccceEEEcCCCcEEEeecccccccccCc-chhcc
Confidence                       237788999999999999999999   999999999999999999999999999997653211 11122


Q ss_pred             ecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCc
Q 003199          697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSF  775 (840)
Q Consensus       697 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  775 (840)
                      ....+++.|+|||++.+..++.++|||||||++|||++ |..||.+..... .   .....          .+.......
T Consensus       234 ~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~-~---~~~~~----------~~~~~~~~~  299 (338)
T cd05102         234 GSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE-E---FCQRL----------KDGTRMRAP  299 (338)
T ss_pred             cCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH-H---HHHHH----------hcCCCCCCC
Confidence            23446688999999999899999999999999999997 999997532110 0   11100          000000011


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          776 RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       776 ~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      ......+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       300 ~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         300 ENATPEIYRIMLACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            1223467788999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-40  Score=335.53  Aligned_cols=273  Identities=25%  Similarity=0.327  Sum_probs=208.4

Q ss_pred             hHHHHHHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhh----HHHHHHHHHHHHHHhccCCCCc
Q 003199          520 DQREILEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQ----LQLDKGLKTEVETLGNIRHKNI  594 (840)
Q Consensus       520 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~----~~~~~~~~~E~~~l~~l~h~ni  594 (840)
                      +.+...++|+..+.||+|.||.|-+|. ..+++.||||++.+............    ....+...+||.+|+++.||||
T Consensus        91 ~~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nV  170 (576)
T KOG0585|consen   91 QDRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNV  170 (576)
T ss_pred             ccceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCe
Confidence            345567889999999999999999994 45799999999965543321111111    1123578999999999999999


Q ss_pred             ceeeeEEec--CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          595 VKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       595 v~l~~~~~~--~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      |+++.+..+  .+..|||+|||..|.+.. .......+++.++++++.+++.||+|||.   +|||||||||+|+|++++
T Consensus       171 V~LiEvLDDP~s~~~YlVley~s~G~v~w-~p~d~~els~~~Ar~ylrDvv~GLEYLH~---QgiiHRDIKPsNLLl~~~  246 (576)
T KOG0585|consen  171 VKLIEVLDDPESDKLYLVLEYCSKGEVKW-CPPDKPELSEQQARKYLRDVVLGLEYLHY---QGIIHRDIKPSNLLLSSD  246 (576)
T ss_pred             eEEEEeecCcccCceEEEEEeccCCcccc-CCCCcccccHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheEEcCC
Confidence            999999976  457799999999887743 33333348999999999999999999999   999999999999999999


Q ss_pred             CCCeeecccchhhhhcc--CCCCcceecccccccccCccccccCC----CCccccchhHHHHHHHHHhCCCCCCCCCCCC
Q 003199          673 YQPKVADFGIAKVLQAR--GGKDSTTTVIAGTYGYLAPEYAYSSK----ATTKCDVYSFGVVLMELITGRKPVEDDFGDN  746 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~slG~il~el~tg~~p~~~~~~~~  746 (840)
                      |++||+|||.+......  .+.+.......|||.|+|||.+.++.    .+.+.||||+||+||.|+.|+.||-+++.  
T Consensus       247 g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~--  324 (576)
T KOG0585|consen  247 GTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFE--  324 (576)
T ss_pred             CcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchH--
Confidence            99999999998765321  12223334578999999999987732    36789999999999999999999976421  


Q ss_pred             cchhhhhhhhhccccchhhhccccc-CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          747 KNIIYWVSIKVDTKEGIMEVLDKKL-SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                        +..           ..+++...+ -+...+....+.+|+.+++.+||++|.+..+|..|.+-..
T Consensus       325 --~~l-----------~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~  377 (576)
T KOG0585|consen  325 --LEL-----------FDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTR  377 (576)
T ss_pred             --HHH-----------HHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecceecc
Confidence              111           111222221 2333445566778888999999999999999999986433

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.2e-39  Score=318.09  Aligned_cols=291  Identities=23%  Similarity=0.292  Sum_probs=213.1

Q ss_pred             HHHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      -.++|+.++.|++|.||.||+| +.++++.||+|+++-...+..        .--.-.+||.++.+++|||||.+-....
T Consensus        74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~G--------FPItsLREIniLl~~~H~NIV~vkEVVv  145 (419)
T KOG0663|consen   74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEG--------FPITSLREINILLKARHPNIVEVKEVVV  145 (419)
T ss_pred             cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCC--------CcchhHHHHHHHHhcCCCCeeeeEEEEe
Confidence            3467788899999999999999 556899999999965543211        1123468999999999999999987764


Q ss_pred             --cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          603 --SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       603 --~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                        +-+..|+|||||+. +|...++.....+...++..++.|+++|++|||.   ..|+|||||++|+|+...|.+||+||
T Consensus       146 G~~~d~iy~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~---~wilHRDLK~SNLLm~~~G~lKiaDF  221 (419)
T KOG0663|consen  146 GSNMDKIYIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHD---NWILHRDLKTSNLLLSHKGILKIADF  221 (419)
T ss_pred             ccccceeeeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhh---ceeEecccchhheeeccCCcEEeccc
Confidence              45678999999965 9999998887789999999999999999999999   89999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCc-----------c
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNK-----------N  748 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-----------~  748 (840)
                      |+|+.+..   .....+..+-|..|.|||.+.+. .|+.+.|+||+|||+.||+++++-|.+...-+.           .
T Consensus       222 GLAR~ygs---p~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPt  298 (419)
T KOG0663|consen  222 GLAREYGS---PLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPS  298 (419)
T ss_pred             chhhhhcC---CcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Confidence            99998854   23456667789999999998775 689999999999999999999998876432111           1


Q ss_pred             hhhhhhhhhcccc---chhhhcccccCCCcHHH--HHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC-CCCCCC---CC
Q 003199          749 IIYWVSIKVDTKE---GIMEVLDKKLSGSFRDE--MIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD-PCRFES---CK  819 (840)
Q Consensus       749 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~-~~~~~~---~~  819 (840)
                      ...|-....-...   .........++..+...  ...-++++...+..||.+|.|+.|.+++=.-.. |....+   -+
T Consensus       299 e~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P~p~~P~~~Pt  378 (419)
T KOG0663|consen  299 EAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETPLPIDPSMFPT  378 (419)
T ss_pred             cccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcccccccCCCCCChhhcCC
Confidence            1111111000000   00000011111222111  245567888999999999999999998843222 222222   34


Q ss_pred             CCCCccccCC
Q 003199          820 FPNKSNKESS  829 (840)
Q Consensus       820 ~~~~~~~~~~  829 (840)
                      ||.+++.+..
T Consensus       379 ~P~k~~~~~~  388 (419)
T KOG0663|consen  379 WPAKSEQQRV  388 (419)
T ss_pred             CccccccccC
Confidence            5555555543

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=4.2e-39  Score=334.63  Aligned_cols=256  Identities=23%  Similarity=0.343  Sum_probs=203.9

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+.+.+||+|+||.||.|+.+ +|..+|+|++++...       ......+.+..|-.+|....+|.||+++-.|++
T Consensus       140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M-------~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD  212 (550)
T KOG0605|consen  140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEM-------LKKNQVEHVRAERDILAEVDSPWVVKLYYSFQD  212 (550)
T ss_pred             cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHH-------HhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecC
Confidence            456788899999999999999655 799999999965432       223446778889999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .+..||||||++||++...|.+.. .+++..+..++.+++.|++.+|+   .|+|||||||+|+|||..|++||+|||++
T Consensus       213 ~~~LYLiMEylPGGD~mTLL~~~~-~L~e~~arfYiaE~vlAI~~iH~---~gyIHRDIKPdNlLiD~~GHiKLSDFGLs  288 (550)
T KOG0605|consen  213 KEYLYLIMEYLPGGDMMTLLMRKD-TLTEDWARFYIAETVLAIESIHQ---LGYIHRDIKPDNLLIDAKGHIKLSDFGLS  288 (550)
T ss_pred             CCeeEEEEEecCCccHHHHHHhcC-cCchHHHHHHHHHHHHHHHHHHH---cCcccccCChhheeecCCCCEeecccccc
Confidence            999999999999999999998875 79999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccC-------------------CCCcc-------------------------eecccccccccCccccccCCCCcc
Q 003199          684 KVLQARG-------------------GKDST-------------------------TTVIAGTYGYLAPEYAYSSKATTK  719 (840)
Q Consensus       684 ~~~~~~~-------------------~~~~~-------------------------~~~~~gt~~y~aPE~~~~~~~~~~  719 (840)
                      .-+....                   ..+..                         ....+|||.|||||++.+..|+..
T Consensus       289 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~  368 (550)
T KOG0605|consen  289 TGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKE  368 (550)
T ss_pred             chhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCcc
Confidence            5442100                   00000                         012579999999999999999999


Q ss_pred             ccchhHHHHHHHHHhCCCCCCCCCCC--CcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCC
Q 003199          720 CDVYSFGVVLMELITGRKPVEDDFGD--NKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR  797 (840)
Q Consensus       720 ~Dv~slG~il~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R  797 (840)
                      +|.||+|||+|||+.|.+||..+...  ...+..|...-       .       .+...+...+..+||.+|+. ||++|
T Consensus       369 cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l-------~-------fP~~~~~s~eA~DLI~rll~-d~~~R  433 (550)
T KOG0605|consen  369 CDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETL-------K-------FPEEVDLSDEAKDLITRLLC-DPENR  433 (550)
T ss_pred             ccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhc-------c-------CCCcCcccHHHHHHHHHHhc-CHHHh
Confidence            99999999999999999999865321  12222232110       0       01111122566678889988 99999


Q ss_pred             C---CHHHHHHH
Q 003199          798 P---TMNEVVQL  806 (840)
Q Consensus       798 p---s~~evl~~  806 (840)
                      .   .+.||.+|
T Consensus       434 LG~~G~~EIK~H  445 (550)
T KOG0605|consen  434 LGSKGAEEIKKH  445 (550)
T ss_pred             cCcccHHHHhcC
Confidence            7   57787765

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-39  Score=334.48  Aligned_cols=264  Identities=24%  Similarity=0.321  Sum_probs=209.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +....+++||+|.||.|..+....+..||||+++....         .....+|.+|+++|.+++|||||+++|.|..++
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~---------~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~De  608 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDAT---------KNARNDFLKEIKILSRLKHPNIVELLGVCVQDD  608 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccc---------hhHHHHHHHHHHHHhccCCCCeeEEEeeeecCC
Confidence            34566789999999999999998889999999855432         344688999999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCC-CChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~-~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++|+|||++|+|.+++..+... ..-.....|+.|||.|++||.+   .++||||+.++|+|+|.++++||+|||+++
T Consensus       609 PicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes---~nfVHrd~a~rNcLv~~e~~iKiadfgmsR  685 (807)
T KOG1094|consen  609 PLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLES---LNFVHRDLATRNCLVDGEFTIKIADFGMSR  685 (807)
T ss_pred             chHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHh---hchhhccccccceeecCcccEEecCccccc
Confidence            999999999999999999887432 2455667799999999999999   899999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh--CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT--GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t--g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      -+... ..........-+.+|||||.+..++++.+||||+||+.+||+++  .+.||.+..+  .+.+........... 
T Consensus       686 ~lysg-~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~--e~vven~~~~~~~~~-  761 (807)
T KOG1094|consen  686 NLYSG-DYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTD--EQVVENAGEFFRDQG-  761 (807)
T ss_pred             ccccC-CceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhH--HHHHHhhhhhcCCCC-
Confidence            66442 22233344556789999999999999999999999999999876  7889875421  111111111111110 


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                       ..+    ......-+...+.+++.+||..|-++||+++++...|.+.
T Consensus       762 -~~~----~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  762 -RQV----VLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             -cce----eccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence             000    1111223456778999999999999999999999998764

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-40  Score=334.89  Aligned_cols=248  Identities=29%  Similarity=0.393  Sum_probs=204.7

Q ss_pred             hcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|+..+.||+|+||.||+| +..+++.||+|++.....+         ...+++..|+.++..++++||.+.||.+..+.
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~---------deIediqqei~~Ls~~~~~~it~yygsyl~g~   84 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAE---------DEIEDIQQEISVLSQCDSPNITEYYGSYLKGT   84 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcc---------hhhHHHHHHHHHHHhcCcchHHhhhhheeecc
Confidence            4566688999999999999 5568999999999544322         22467888999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..+++||||.+|++.+.+..+. .+++..+..+.+++..|+.|+|.   ++.+|||||+.||++..+|.+|++|||.+..
T Consensus        85 ~LwiiMey~~gGsv~~lL~~~~-~~~E~~i~~ilre~l~~l~ylH~---~~kiHrDIKaanil~s~~g~vkl~DfgVa~q  160 (467)
T KOG0201|consen   85 KLWIIMEYCGGGSVLDLLKSGN-ILDEFEIAVILREVLKGLDYLHS---EKKIHRDIKAANILLSESGDVKLADFGVAGQ  160 (467)
T ss_pred             cHHHHHHHhcCcchhhhhccCC-CCccceeeeehHHHHHHhhhhhh---cceecccccccceeEeccCcEEEEecceeee
Confidence            9999999999999999998875 45888888999999999999999   9999999999999999999999999999977


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      +..   .......++||+.|||||++....|+.|+||||||++.+||.+|.+|+.+...-                .+.-
T Consensus       161 l~~---~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPm----------------rvlf  221 (467)
T KOG0201|consen  161 LTN---TVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPM----------------RVLF  221 (467)
T ss_pred             eec---hhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcc----------------eEEE
Confidence            643   222336789999999999999889999999999999999999999999864220                0111


Q ss_pred             hcccccCCCcH-HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          766 VLDKKLSGSFR-DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~-~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+.+..++.+. +....+.+++..|+.+||+.||+|.+++++
T Consensus       222 lIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  222 LIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             eccCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence            12222222221 233445667779999999999999999887

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-39  Score=344.25  Aligned_cols=255  Identities=27%  Similarity=0.380  Sum_probs=208.3

Q ss_pred             hcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      -|...+-||.|+.|.|-.|+ ..+|+.+|||++.+...       ........+.+|+.+|+-+.|||++++++.+++..
T Consensus        13 pwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~-------~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~   85 (786)
T KOG0588|consen   13 PWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSE-------LSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQ   85 (786)
T ss_pred             ceeccccccCCCCceehhhhcccccceeEEEeeccccc-------cccccccchhhhhHHHHHhcCCCeeeeeeeeccCc
Confidence            35567789999999999995 46899999999955431       11223567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ++|+|.||+++|-|++++-..+ .+++.++.+++.||+.|+.|+|.   .+|+|||+||+|+|+|..+.+||+|||+|..
T Consensus        86 ~lylvlEyv~gGELFdylv~kG-~l~e~eaa~ff~QIi~gv~yCH~---~~icHRDLKpENlLLd~~~nIKIADFGMAsL  161 (786)
T KOG0588|consen   86 HLYLVLEYVPGGELFDYLVRKG-PLPEREAAHFFRQILDGVSYCHA---FNICHRDLKPENLLLDVKNNIKIADFGMASL  161 (786)
T ss_pred             eEEEEEEecCCchhHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhh---hcceeccCCchhhhhhcccCEeeeccceeec
Confidence            9999999999999999998776 78999999999999999999999   8999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      -    ..+....+.+|+|.|.|||++.+..| +.++||||.|||||.|+||+.||+++.  -..+..    ++..     
T Consensus       162 e----~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN--ir~LLl----KV~~-----  226 (786)
T KOG0588|consen  162 E----VPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN--IRVLLL----KVQR-----  226 (786)
T ss_pred             c----cCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc--HHHHHH----HHHc-----
Confidence            4    23445567899999999999999988 578999999999999999999998641  111111    1110     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                          +.+ .-......+..+|+.+|+..||++|.|++||++|-.=...
T Consensus       227 ----G~f-~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~  269 (786)
T KOG0588|consen  227 ----GVF-EMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGY  269 (786)
T ss_pred             ----Ccc-cCCCcCCHHHHHHHHHHhccCccccccHHHHhhCchhhcC
Confidence                000 0112334566778889999999999999999999654333

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-39  Score=327.35  Aligned_cols=268  Identities=28%  Similarity=0.364  Sum_probs=213.3

Q ss_pred             hhHHHHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc--CCCCcce
Q 003199          519 FDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI--RHKNIVK  596 (840)
Q Consensus       519 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~  596 (840)
                      +.++.+..+.+..+.||+|.||.||+|+|+ |+.||||+|....             +..+.+|.++++.+  +|+||+.
T Consensus       204 LVQRTiarqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~srd-------------E~SWfrEtEIYqTvmLRHENILg  269 (513)
T KOG2052|consen  204 LVQRTIARQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSRD-------------ERSWFRETEIYQTVMLRHENILG  269 (513)
T ss_pred             HhHHhhhheeEEEEEecCccccceeecccc-CCceEEEEecccc-------------hhhhhhHHHHHHHHHhccchhhh
Confidence            468889999999999999999999999999 8999999995433             34566777777664  8999999


Q ss_pred             eeeEEec----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhc-----CCCCeEecCCCCCCE
Q 003199          597 LYCYFSS----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG-----LLSPIIHRDIKSTNI  667 (840)
Q Consensus       597 l~~~~~~----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~Dlk~~Ni  667 (840)
                      +++.=..    ..+.+||++|.+.|||+|+|.+.  .++-....+++..+|.||+|||..     ..+.|.|||||+.||
T Consensus       270 FIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r~--tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNI  347 (513)
T KOG2052|consen  270 FIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNRN--TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNI  347 (513)
T ss_pred             hhhccccCCCceEEEEEeeecccCCcHHHHHhhc--cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccE
Confidence            9987533    24668999999999999999985  689999999999999999999952     346799999999999


Q ss_pred             EEcCCCCCeeecccchhhhhcc-CCCCcceecccccccccCccccccCC------CCccccchhHHHHHHHHHhC-----
Q 003199          668 LLDVNYQPKVADFGIAKVLQAR-GGKDSTTTVIAGTYGYLAPEYAYSSK------ATTKCDVYSFGVVLMELITG-----  735 (840)
Q Consensus       668 ll~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~slG~il~el~tg-----  735 (840)
                      |+..++++.|+|+|+|...... +.-+......+||.+|||||++...-      ....+||||||.|+||++-+     
T Consensus       348 LVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~gg  427 (513)
T KOG2052|consen  348 LVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGG  427 (513)
T ss_pred             EEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999776543 33455667889999999999986542      23469999999999999864     


Q ss_pred             -----CCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCc------HHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 003199          736 -----RKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSF------RDEMIQVLRIAIRCTSKSPATRPTMNEVV  804 (840)
Q Consensus       736 -----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~l~~~cl~~dP~~Rps~~evl  804 (840)
                           +.||.+....+....          +....+...++++..      .+.+..+.+++..||..+|..|.|+-.+.
T Consensus       428 i~eey~~Pyyd~Vp~DPs~e----------eMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriK  497 (513)
T KOG2052|consen  428 IVEEYQLPYYDVVPSDPSFE----------EMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIK  497 (513)
T ss_pred             EehhhcCCcccCCCCCCCHH----------HHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHH
Confidence                 456665433333221          112223333443332      35678899999999999999999999999


Q ss_pred             HHhhhcCC
Q 003199          805 QLLAEADP  812 (840)
Q Consensus       805 ~~L~~~~~  812 (840)
                      +.|.++..
T Consensus       498 Ktl~~l~~  505 (513)
T KOG2052|consen  498 KTLAKLSN  505 (513)
T ss_pred             HHHHHHhc
Confidence            99998764

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.6e-39  Score=307.96  Aligned_cols=260  Identities=28%  Similarity=0.406  Sum_probs=215.5

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeee
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYC  599 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~  599 (840)
                      ......|...+.+|+|..++|-++ ...+|...|+|++.........  .......+.-..|+.+++++ .||+|+++.+
T Consensus        13 ~~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~--e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D   90 (411)
T KOG0599|consen   13 KGFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESG--ETPYEMREATRQEISILRQVMGHPYIIDLQD   90 (411)
T ss_pred             hhHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCC--ccHHHHHHHHHHHHHHHHHhcCCCcEEEeee
Confidence            455677888999999999999886 6668999999998655443322  22455667788999999999 5999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      +|+.+...++|+|.|+.|.|++++... ..+++...+.|+.|+.+|++|||.   +.||||||||+|||+|++..+||+|
T Consensus        91 ~yes~sF~FlVFdl~prGELFDyLts~-VtlSEK~tR~iMrqlfegVeylHa---~~IVHRDLKpENILlddn~~i~isD  166 (411)
T KOG0599|consen   91 VYESDAFVFLVFDLMPRGELFDYLTSK-VTLSEKETRRIMRQLFEGVEYLHA---RNIVHRDLKPENILLDDNMNIKISD  166 (411)
T ss_pred             eccCcchhhhhhhhcccchHHHHhhhh-eeecHHHHHHHHHHHHHHHHHHHH---hhhhhcccChhheeeccccceEEec
Confidence            999999999999999999999999876 478999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccc------cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY------SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      ||.|..+.+    .......+|||+|.|||.+.      ...|+...|+||.|||+|.++.|.+||-            .
T Consensus       167 FGFa~~l~~----GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFw------------H  230 (411)
T KOG0599|consen  167 FGFACQLEP----GEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFW------------H  230 (411)
T ss_pred             cceeeccCC----chhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchh------------H
Confidence            999988754    33456789999999999874      2468889999999999999999999984            2


Q ss_pred             hhhhccccchhhhcccc---cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          754 SIKVDTKEGIMEVLDKK---LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      +..+-.   ...+...+   -.+.+.+......+|+.+|++.||.+|.|++|+++|
T Consensus       231 RkQmlM---LR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  231 RKQMLM---LRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             HHHHHH---HHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence            221111   11112222   245666777778889999999999999999999987

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-38  Score=335.35  Aligned_cols=251  Identities=24%  Similarity=0.332  Sum_probs=198.6

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec----Ccc
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS----LYC  606 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~  606 (840)
                      ...||+|++|.||+|.+ +|+.||||++.....       ......+.+.+|+.++++++||||++++|++.+    ...
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~   96 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHK-------GHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPR   96 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEecccccc-------ccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCc
Confidence            35799999999999988 489999999854321       112335678899999999999999999999866    346


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++||||+++|+|.+++.... .++|.....++.+++.|++|||+.  .+++||||||+||++++++.+||+|||+++.+
T Consensus        97 ~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~  173 (283)
T PHA02988         97 LSLILEYCTRGYLREVLDKEK-DLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKIL  173 (283)
T ss_pred             eEEEEEeCCCCcHHHHHhhCC-CCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhh
Confidence            789999999999999998764 689999999999999999999972  37889999999999999999999999999865


Q ss_pred             hccCCCCcceecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ...      .....|+..|+|||++.+  ..++.++|||||||++|||++|+.||.....  .   ...........   
T Consensus       174 ~~~------~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~--~---~~~~~i~~~~~---  239 (283)
T PHA02988        174 SSP------PFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT--K---EIYDLIINKNN---  239 (283)
T ss_pred             ccc------cccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH--H---HHHHHHHhcCC---
Confidence            321      123468899999999876  6889999999999999999999999975311  1   11111000000   


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                         ....+.   +....+.+++.+||+.||++|||++|+++.|+...+
T Consensus       240 ---~~~~~~---~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~~  281 (283)
T PHA02988        240 ---SLKLPL---DCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYKF  281 (283)
T ss_pred             ---CCCCCC---cCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHh
Confidence               001111   234457778889999999999999999999987654

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-39  Score=302.66  Aligned_cols=253  Identities=28%  Similarity=0.418  Sum_probs=210.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|.||.||.|.. +++-.||+|++.+.+       ....+...++.+|+++-+.++||||+++++||.+
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsq-------i~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd   93 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQ-------ILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHD   93 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHH-------HHHhcchhhhhheeEeecccCCccHHhhhhheec
Confidence            46778899999999999999955 478899999996554       2234556789999999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ....|+++||..+|.++..+..+. ..+++.....++.|+|.|+.|+|.   ++|+||||||+|+|++.++..|++|||.
T Consensus        94 ~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~---k~VIhRdiKpenlLlg~~~~lkiAdfGw  170 (281)
T KOG0580|consen   94 SKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHL---KRVIHRDIKPENLLLGSAGELKIADFGW  170 (281)
T ss_pred             cceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhcc---CCcccCCCCHHHhccCCCCCeeccCCCc
Confidence            999999999999999999998543 468999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +..-     ......+.+||..|.+||...+..++...|+|++|++.||++.|.+||+... ....+....         
T Consensus       171 sV~~-----p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~-~~etYkrI~---------  235 (281)
T KOG0580|consen  171 SVHA-----PSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS-HSETYKRIR---------  235 (281)
T ss_pred             eeec-----CCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh-hHHHHHHHH---------
Confidence            8643     2445667899999999999999999999999999999999999999998642 111111100         


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                         .++-..+.   .......+++.+|+..+|.+|.+..|++++=+
T Consensus       236 ---k~~~~~p~---~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpw  275 (281)
T KOG0580|consen  236 ---KVDLKFPS---TISGGAADLISRLLVKNPIERLALTEVMDHPW  275 (281)
T ss_pred             ---HccccCCc---ccChhHHHHHHHHhccCccccccHHHHhhhHH
Confidence               11112222   23345567888999999999999999998743

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.4e-39  Score=321.13  Aligned_cols=253  Identities=23%  Similarity=0.379  Sum_probs=210.4

Q ss_pred             HHHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ...+|+..+.||+|.||+|-+| +...|+.||||.+++...+       +.+..-.+.+||++|..++||||++++..|+
T Consensus        51 lkHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIk-------deqDlvhIRREIeIMSsLNHPhII~IyEVFE  123 (668)
T KOG0611|consen   51 LKHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIK-------DEQDLVHIRREIEIMSSLNHPHIIQIYEVFE  123 (668)
T ss_pred             hhhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcc-------cHHHHHHHHHHHHHHhhcCCCceeehhhhhc
Confidence            3456677788999999999998 5578999999998655432       3455667899999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ..+...+||||..+|.|++++.+.. .+++.+++.+++||+.|+.|+|.   +++||||||.+|||+|+++.+||+|||+
T Consensus       124 NkdKIvivMEYaS~GeLYDYiSer~-~LsErEaRhfFRQIvSAVhYCHk---nrVvHRDLKLENILLD~N~NiKIADFGL  199 (668)
T KOG0611|consen  124 NKDKIVIVMEYASGGELYDYISERG-SLSEREARHFFRQIVSAVHYCHK---NRVVHRDLKLENILLDQNNNIKIADFGL  199 (668)
T ss_pred             CCceEEEEEEecCCccHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHhh---ccceecccchhheeecCCCCeeeeccch
Confidence            9999999999999999999999876 79999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +..+.+    ..-...++|++-|.+||++.+..| .+..|-||+||++|.++.|..||++.  +...++.          
T Consensus       200 SNly~~----~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~--Dhk~lvr----------  263 (668)
T KOG0611|consen  200 SNLYAD----KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGR--DHKRLVR----------  263 (668)
T ss_pred             hhhhcc----ccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCc--hHHHHHH----------
Confidence            988753    445567899999999999999887 68899999999999999999999863  1111111          


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                         .+.......  ++.+....-|+.||+..+|++|-|+.+|..|-+
T Consensus       264 ---QIs~GaYrE--P~~PSdA~gLIRwmLmVNP~RRATieDiAsHWW  305 (668)
T KOG0611|consen  264 ---QISRGAYRE--PETPSDASGLIRWMLMVNPERRATIEDIASHWW  305 (668)
T ss_pred             ---HhhcccccC--CCCCchHHHHHHHHHhcCcccchhHHHHhhhhe
Confidence               111111110  112334455777999999999999999988764

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=3.8e-38  Score=329.69  Aligned_cols=256  Identities=24%  Similarity=0.312  Sum_probs=201.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||.||+|.++    .+..||+|.+.....         ......+.+|+.++++++||||+++++++
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   75 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS---------DKQRRGFLAEALTLGQFDHSNIVRLEGVI   75 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC---------HHHHHHHHHHHHHHhcCCCCCcCeEEEEE
Confidence            45778889999999999999653    357899998854321         22346788999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ......++||||+++|+|.+++......+++.+++.++.|++.||+|||+   ++++||||||+||+++.++.++++|||
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~---~~iiH~dikp~nili~~~~~~~l~dfg  152 (266)
T cd05064          76 TRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSE---MGYVHKGLAAHKVLVNSDLVCKISGFR  152 (266)
T ss_pred             ecCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeeccccHhhEEEcCCCcEEECCCc
Confidence            99999999999999999999998765578999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      .+......  .........++..|+|||.+.+..++.++|||||||++||+++ |+.||.....  ......        
T Consensus       153 ~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~--~~~~~~--------  220 (266)
T cd05064         153 RLQEDKSE--AIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG--QDVIKA--------  220 (266)
T ss_pred             cccccccc--chhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHH--------
Confidence            87653211  1111122345678999999988999999999999999999775 9999975311  111110        


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                           ..+....+........+.+++.+||+.+|++||++.++.+.|+++
T Consensus       221 -----~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         221 -----VEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             -----HHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence                 011111111222345677788899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=4.8e-38  Score=327.12  Aligned_cols=252  Identities=23%  Similarity=0.340  Sum_probs=200.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|.++++..+|+|.+.....           ....+.+|++++++++||||+++++++....
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~-----------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   72 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM-----------SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQK   72 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCc-----------cHHHHHHHHHHHHHCCCCCceeEEEEEccCC
Confidence            45777889999999999999988888999998743221           1356888999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.++++.....+++..+..++.|++.||+|||+   .+++||||||+||++++++.+|++|||.++.
T Consensus        73 ~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~  149 (256)
T cd05114          73 PLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLER---NSFIHRDLAARNCLVSSTGVVKVSDFGMTRY  149 (256)
T ss_pred             CEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcceEEEcCCCeEEECCCCCccc
Confidence            9999999999999999998654468999999999999999999999   9999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....  .........++..|+|||++.+..++.++||||||+++|||++ |+.||.....  .......   ..      
T Consensus       150 ~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~--~~~~~~i---~~------  216 (256)
T cd05114         150 VLDD--EYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN--YEVVEMI---SR------  216 (256)
T ss_pred             cCCC--ceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHH---HC------
Confidence            5321  1111222345668999999988889999999999999999999 8999865311  1111110   00      


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                          .............+.+++.+||+.+|++||+++++++.|.
T Consensus       217 ----~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l~  256 (256)
T cd05114         217 ----GFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAIT  256 (256)
T ss_pred             ----CCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                0000001112346788999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.7e-38  Score=334.12  Aligned_cols=253  Identities=26%  Similarity=0.283  Sum_probs=198.5

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |...+.||+|+||.||+|.. .+|+.||||.+......       .......+.+|+.++++++|++++++++++.+.+.
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-------~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~   74 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIK-------KRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDA   74 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhh-------hhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCe
Confidence            56678899999999999955 57999999988433211       12234567889999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          607 NLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      .++||||+++|+|.+++... ...+++..+..++.|++.||+|||+   .+|+||||||+||++++++.++|+|||++..
T Consensus        75 ~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~  151 (285)
T cd05631          75 LCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQR---ERIVYRDLKPENILLDDRGHIRISDLGLAVQ  151 (285)
T ss_pred             EEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeCCCcEE
Confidence            99999999999999887643 3368999999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...    ........||..|+|||++.+..++.++|||||||++|||++|+.||......... ..... ..  ..    
T Consensus       152 ~~~----~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~-~~~~~-~~--~~----  219 (285)
T cd05631         152 IPE----GETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKR-EEVDR-RV--KE----  219 (285)
T ss_pred             cCC----CCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhH-HHHHH-Hh--hc----
Confidence            532    11223457899999999999999999999999999999999999999753221100 00000 00  00    


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~  806 (840)
                       .......   .....+.+++.+||+.||.+||+     +++++++
T Consensus       220 -~~~~~~~---~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  261 (285)
T cd05631         220 -DQEEYSE---KFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQH  261 (285)
T ss_pred             -ccccCCc---cCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcC
Confidence             0001111   22345677888999999999997     8888876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-38  Score=336.84  Aligned_cols=249  Identities=24%  Similarity=0.313  Sum_probs=200.5

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||+|... +|+.||+|++.....       ...+..+.+.+|++++++++||||+++++++.+..
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   74 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEV-------IRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQR   74 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHH-------hhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCC
Confidence            5777889999999999999654 789999999843221       11233566889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||++++++.+||+|||+++.
T Consensus        75 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~  150 (291)
T cd05612          75 FLYMLMEYVPGGELFSYLRNSG-RFSNSTGLFYASEIVCALEYLHS---KEIVYRDLKPENILLDKEGHIKLTDFGFAKK  150 (291)
T ss_pred             eEEEEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEEecCcchh
Confidence            9999999999999999997754 68999999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...      ......||+.|+|||++.+..++.++|||||||++|||++|+.||.....     ..........      
T Consensus       151 ~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~-----~~~~~~i~~~------  213 (291)
T cd05612         151 LRD------RTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP-----FGIYEKILAG------  213 (291)
T ss_pred             ccC------CcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhC------
Confidence            532      12235689999999999988899999999999999999999999975311     0111100000      


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHHhh
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQLLA  808 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~L~  808 (840)
                        ...++...   ...+.+++.+|++.||.+||+     +.+++++-.
T Consensus       214 --~~~~~~~~---~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~  256 (291)
T cd05612         214 --KLEFPRHL---DLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRW  256 (291)
T ss_pred             --CcCCCccC---CHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCcc
Confidence              00111222   345667888999999999995     899887743

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=2.5e-38  Score=340.41  Aligned_cols=245  Identities=23%  Similarity=0.304  Sum_probs=195.9

Q ss_pred             CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEE
Q 003199          532 NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV  610 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV  610 (840)
                      +.||+|+||.||+|.. .+|+.||||++.....       ........+.+|+.++++++||||+++++++......++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv   73 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVI-------IAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFV   73 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-------hhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEE
Confidence            4699999999999955 5789999999853221       1122345677899999999999999999999999999999


Q ss_pred             EeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccC
Q 003199          611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG  690 (840)
Q Consensus       611 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~  690 (840)
                      |||+++|+|.+++.... .+++..+..++.||+.||+|||+   .+|+||||||+||+++.++.+||+|||+++....  
T Consensus        74 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~L~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~--  147 (323)
T cd05571          74 MEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALGYLHS---CDVVYRDLKLENLMLDKDGHIKITDFGLCKEGIS--  147 (323)
T ss_pred             EeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEeeCCCCccccc--
Confidence            99999999999998754 68999999999999999999999   9999999999999999999999999999875322  


Q ss_pred             CCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       691 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                       .........||+.|+|||++.+..++.++||||+||++|||++|+.||.....  ...   ......        .+..
T Consensus       148 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~---~~~~~~--------~~~~  213 (323)
T cd05571         148 -DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--EKL---FELILM--------EEIR  213 (323)
T ss_pred             -CCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH--HHH---HHHHHc--------CCCC
Confidence             12223446799999999999999999999999999999999999999965211  000   000000        0111


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      ++..   ...++.+++.+|++.||++||     ++.+++++
T Consensus       214 ~p~~---~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  251 (323)
T cd05571         214 FPRT---LSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEH  251 (323)
T ss_pred             CCCC---CCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcC
Confidence            2222   234566788899999999999     89999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.8e-39  Score=320.44  Aligned_cols=257  Identities=28%  Similarity=0.423  Sum_probs=196.5

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|...+.+|+|+||.||+|... +++.||||+.+.....              --+|+++|+.++|||||++.-+|....
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~--------------knrEl~im~~l~HpNIV~L~~~f~~~~   90 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY--------------KNRELQIMRKLDHPNIVRLLYFFSSST   90 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc--------------CcHHHHHHHhcCCcCeeeEEEEEEecC
Confidence            4667789999999999999665 5799999998765432              136899999999999999988874422


Q ss_pred             -----cceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC-CCCe
Q 003199          606 -----CNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPK  676 (840)
Q Consensus       606 -----~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~k  676 (840)
                           +..+|||||+. +|.+.++..   ...++...+.-+..||.+||.|||+   .+|+||||||.|+|+|.+ |.+|
T Consensus        91 ~~d~~~lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~---~~IcHRDIKPqNlLvD~~tg~LK  166 (364)
T KOG0658|consen   91 ESDEVYLNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHS---HGICHRDIKPQNLLVDPDTGVLK  166 (364)
T ss_pred             CCchhHHHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHh---cCcccCCCChheEEEcCCCCeEE
Confidence                 34689999964 888888742   3567888899999999999999999   999999999999999976 8999


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      |||||.|+.+..    ..+......|+.|.|||.+.+. .|+.+.||||.||++.||+-|++-|.++.+. .++....+.
T Consensus       167 icDFGSAK~L~~----~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~-dQL~eIik~  241 (364)
T KOG0658|consen  167 ICDFGSAKVLVK----GEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSV-DQLVEIIKV  241 (364)
T ss_pred             eccCCcceeecc----CCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHH-HHHHHHHHH
Confidence            999999998854    2333556788999999998875 6899999999999999999999999874322 222222221


Q ss_pred             -hhccccchhhhccc-------ccCC------CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          756 -KVDTKEGIMEVLDK-------KLSG------SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       756 -~~~~~~~~~~~~~~-------~~~~------~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       ...+++.+.....+       .+.+      .......+.++++.++++.+|.+|.++.|++.+
T Consensus       242 lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h  306 (364)
T KOG0658|consen  242 LGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAH  306 (364)
T ss_pred             hCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcc
Confidence             12222222221111       1111      112345678899999999999999999999876

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-38  Score=340.20  Aligned_cols=245  Identities=28%  Similarity=0.382  Sum_probs=196.1

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      .++|...++||+|+||+|+++..+ +++.+|||++++...-.       ....+..+.|..++... +||.+++++++|+
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~-------~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQ  439 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQ-------RDEVESLMCEKRIFELANRHPFLVNLFSCFQ  439 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceec-------cccHHHHHHHHHHHHHhccCCeEeecccccc
Confidence            356788899999999999999765 68899999996654321       12234455666666666 6999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ..++.|.||||+.||++..+.+..  .+++..+.-+|..|+.||+|||+   ++|||||||.+|||+|.+|++||+|||+
T Consensus       440 T~~~l~fvmey~~Ggdm~~~~~~~--~F~e~rarfyaAev~l~L~fLH~---~~IIYRDlKLdNiLLD~eGh~kiADFGl  514 (694)
T KOG0694|consen  440 TKEHLFFVMEYVAGGDLMHHIHTD--VFSEPRARFYAAEVVLGLQFLHE---NGIIYRDLKLDNLLLDTEGHVKIADFGL  514 (694)
T ss_pred             cCCeEEEEEEecCCCcEEEEEecc--cccHHHHHHHHHHHHHHHHHHHh---cCceeeecchhheEEcccCcEEeccccc
Confidence            999999999999999965555543  79999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ++.--   .....+.+++|||.|||||++.+..|+.++|.|||||+||||+.|+.||.++.++  .+..   ..+.    
T Consensus       515 cKe~m---~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEe--e~Fd---sI~~----  582 (694)
T KOG0694|consen  515 CKEGM---GQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEE--EVFD---SIVN----  582 (694)
T ss_pred             ccccC---CCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHH--HHHH---HHhc----
Confidence            97532   2445678899999999999999999999999999999999999999999864221  1100   0000    


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM  800 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~  800 (840)
                          -+...+.   ....+.+.++.+++.++|++|.-+
T Consensus       583 ----d~~~yP~---~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  583 ----DEVRYPR---FLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             ----CCCCCCC---cccHHHHHHHHHHhccCcccccCC
Confidence                0111122   234556677779999999999865

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=6.2e-38  Score=343.62  Aligned_cols=257  Identities=25%  Similarity=0.372  Sum_probs=199.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|+..+.||+|+||.||+|..      .++..||||++.....         ....+.+.+|+.+++.+ +||||++++
T Consensus        35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~---------~~~~~~~~~Ei~il~~l~~HpnIv~l~  105 (375)
T cd05104          35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH---------LTEREALMSELKVLSYLGNHINIVNLL  105 (375)
T ss_pred             HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC---------cHHHHHHHHHHHHHHHhcCCcceeeee
Confidence            4678889999999999999853      2456899999843221         12245688999999999 899999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC---------------------------------------------------
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------------------------------------------  627 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------------------------------------------  627 (840)
                      ++|.+....++||||+++|+|.+++....                                                   
T Consensus       106 ~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  185 (375)
T cd05104         106 GACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADK  185 (375)
T ss_pred             eeeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccc
Confidence            99999999999999999999999886421                                                   


Q ss_pred             -----------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          628 -----------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       628 -----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                                             ..++|..+..++.||+.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~  262 (375)
T cd05104         186 RRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLAS---KNCIHRDLAARNILLTHGRITKICDFGLAR  262 (375)
T ss_pred             ccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCchhhEEEECCCcEEEecCccce
Confidence                                   147889999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ....... ........++..|+|||++.+..++.++|||||||++|||++ |..||...... .....+.   ....   
T Consensus       263 ~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~-~~~~~~~---~~~~---  334 (375)
T cd05104         263 DIRNDSN-YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVD-SKFYKMI---KEGY---  334 (375)
T ss_pred             eccCccc-ccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCch-HHHHHHH---HhCc---
Confidence            6543211 111122345678999999999999999999999999999998 88898653211 1111110   0000   


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                          ....+   .....++.+++.+||+.||++||++.|+++.|++
T Consensus       335 ----~~~~~---~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         335 ----RMLSP---ECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             ----cCCCC---CCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence                00001   1123467788899999999999999999999985

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=9.6e-38  Score=333.53  Aligned_cols=263  Identities=24%  Similarity=0.321  Sum_probs=198.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC-----------------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS-----------------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN  588 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~-----------------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~  588 (840)
                      .+|...+.||+|+||.||+|..++                 +..||+|.+....         .......+.+|++++.+
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~   75 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA---------NKNARNDFLKEVKILSR   75 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC---------CHHHHHHHHHHHHHHhh
Confidence            467788899999999999996532                 3469999884322         12235678999999999


Q ss_pred             cCCCCcceeeeEEecCccceEEEeecCCCChHHHhhcCC------------------CCCChHHHHHHHHHHHHHHHHHh
Q 003199          589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGL------------------VHLDWPTRHKIAFGVAQGLAYLH  650 (840)
Q Consensus       589 l~h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------~~~~~~~~~~i~~~i~~~l~~LH  650 (840)
                      ++||||+++++++.+....++||||+++|+|.+++....                  ..++|..+..++.|++.||+|||
T Consensus        76 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH  155 (304)
T cd05096          76 LKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS  155 (304)
T ss_pred             cCCCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999886431                  24688899999999999999999


Q ss_pred             hcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHH
Q 003199          651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLM  730 (840)
Q Consensus       651 ~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~  730 (840)
                      +   .+|+||||||+||+++.++.+||+|||+++...... .........++..|+|||++.+..++.++||||||+++|
T Consensus       156 ~---~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  231 (304)
T cd05096         156 S---LNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGD-YYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLW  231 (304)
T ss_pred             H---CCccccCcchhheEEcCCccEEECCCccceecccCc-eeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHH
Confidence            9   999999999999999999999999999997653321 111222344578899999998889999999999999999


Q ss_pred             HHHh--CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          731 ELIT--GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       731 el~t--g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ||++  +..||....  ......+.........  ...    ...........+.+++.+||+.||++|||+.+|.+.|+
T Consensus       232 el~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         232 EILMLCKEQPYGELT--DEQVIENAGEFFRDQG--RQV----YLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             HHHHccCCCCCCcCC--HHHHHHHHHHHhhhcc--ccc----cccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence            9987  556775421  1111111110000000  000    00011123356788899999999999999999999886


Q ss_pred             h
Q 003199          809 E  809 (840)
Q Consensus       809 ~  809 (840)
                      +
T Consensus       304 ~  304 (304)
T cd05096         304 E  304 (304)
T ss_pred             C
Confidence            4

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=3.8e-38  Score=339.67  Aligned_cols=248  Identities=25%  Similarity=0.336  Sum_probs=200.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|+||.||+|... +|+.||||++.....       ......+.+.+|+.++++++||||+++++++.+.
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   90 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREI-------LKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDE   90 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHH-------hhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcC
Confidence            56788899999999999999665 689999999853221       1123356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus        91 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  166 (329)
T PTZ00263         91 NRVYFLLEFVVGGELFTHLRKAG-RFPNDVAKFYHAELVLAFEYLHS---KDIIYRDLKPENLLLDNKGHVKVTDFGFAK  166 (329)
T ss_pred             CEEEEEEcCCCCChHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEECCCCCEEEeeccCce
Confidence            99999999999999999998764 68899999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....      ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+..    ....+.. .....    
T Consensus       167 ~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~----~~~~~~~-i~~~~----  231 (329)
T PTZ00263        167 KVPD------RTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDT----PFRIYEK-ILAGR----  231 (329)
T ss_pred             EcCC------CcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCC----HHHHHHH-HhcCC----
Confidence            6532      1223579999999999999899999999999999999999999996531    1101100 00000    


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~  806 (840)
                          ..++...   ...+.+++.+|++.||++||+     ++++++|
T Consensus       232 ----~~~p~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        232 ----LKFPNWF---DGRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             ----cCCCCCC---CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence                0111112   234567888999999999996     7888876

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-38  Score=313.75  Aligned_cols=279  Identities=25%  Similarity=0.356  Sum_probs=208.4

Q ss_pred             HHHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +...|...+.||+|+||.|+.| +..+|+.||||++...-        +.....+...+|++.++.++|+||+.+.+.+.
T Consensus        20 i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F--------~~~~~akRtlRElklLr~~~HeNIi~l~di~~   91 (359)
T KOG0660|consen   20 IPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPF--------ENQIDAKRTLRELKLLRHLRHENIIGLLDIFR   91 (359)
T ss_pred             ccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhh--------hchHHHHHHHHHHHHHHHhcCCCcceEEeecc
Confidence            3345555788999999999998 55689999999984322        22445678889999999999999999998875


Q ss_pred             c-----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          603 S-----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       603 ~-----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      .     ....|+|+|+| +.+|.+.++.+. .+....+..+++|+++||.|+|+   .+|+|||+||+|++++.+...||
T Consensus        92 p~~~~~f~DvYiV~elM-etDL~~iik~~~-~L~d~H~q~f~YQiLrgLKyiHS---AnViHRDLKPsNll~n~~c~lKI  166 (359)
T KOG0660|consen   92 PPSRDKFNDVYLVFELM-ETDLHQIIKSQQ-DLTDDHAQYFLYQILRGLKYIHS---ANVIHRDLKPSNLLLNADCDLKI  166 (359)
T ss_pred             cccccccceeEEehhHH-hhHHHHHHHcCc-cccHHHHHHHHHHHHHhcchhhc---ccccccccchhheeeccCCCEEe
Confidence            4     55779999999 679999998764 58999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh-
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI-  755 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-  755 (840)
                      +|||+|+..... ......+....|..|.|||.+.. ..|+.+.||||.|||+.||++|++-|.+...... +...... 
T Consensus       167 ~DFGLAR~~~~~-~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Q-l~lI~~~l  244 (359)
T KOG0660|consen  167 CDFGLARYLDKF-FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQ-LQLILELL  244 (359)
T ss_pred             ccccceeecccc-CcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHH-HHHHHHhc
Confidence            999999987543 33444466778999999998754 5799999999999999999999998876321110 0000000 


Q ss_pred             hhccccc-----------hhhhcccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcCCCCCCC
Q 003199          756 KVDTKEG-----------IMEVLDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEADPCRFES  817 (840)
Q Consensus       756 ~~~~~~~-----------~~~~~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~~~~~~~  817 (840)
                      .....+.           ...-.....+..+    +......++|+.+|+..||.+|+|++|+++|  ++...-...|+
T Consensus       245 GtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~dEP  323 (359)
T KOG0660|consen  245 GTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPEDEP  323 (359)
T ss_pred             CCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCccCC
Confidence            0000000           0011111111122    2233567788889999999999999999998  44443333343

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=8.6e-38  Score=342.07  Aligned_cols=258  Identities=25%  Similarity=0.357  Sum_probs=199.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|+..+.||+|+||.||+|...      ++..||||++.....         ......+.+|+++++.+ +|+||++++
T Consensus        38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~il~~l~~h~nIv~~~  108 (374)
T cd05106          38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH---------TDEREALMSELKILSHLGQHKNIVNLL  108 (374)
T ss_pred             HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC---------HHHHHHHHHHHHHHHhhccCCceeeEe
Confidence            46888899999999999998532      345799999854321         12245688999999999 899999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC---------------------------------------------------
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------------------------------------------  627 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------------------------------------------  627 (840)
                      ++|......++||||+++|+|.+++....                                                   
T Consensus       109 ~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (374)
T cd05106         109 GACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVS  188 (374)
T ss_pred             eEecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcc
Confidence            99999999999999999999999885421                                                   


Q ss_pred             ------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          628 ------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       628 ------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                                        ..+++.++..++.|++.||+|||+   ++|+||||||+||++++++.+||+|||+++.....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~  265 (374)
T cd05106         189 SSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLAS---KNCIHRDVAARNVLLTDGRVAKICDFGLARDIMND  265 (374)
T ss_pred             ccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCEEeccCchheEEEeCCCeEEEeeceeeeeccCC
Confidence                              246888999999999999999999   99999999999999999999999999999765321


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD  768 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  768 (840)
                      . .........++..|+|||++.+..++.++|||||||++|||++ |+.||....... .   ....... .      ..
T Consensus       266 ~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~-~---~~~~~~~-~------~~  333 (374)
T cd05106         266 S-NYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS-K---FYKMVKR-G------YQ  333 (374)
T ss_pred             c-ceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH-H---HHHHHHc-c------cC
Confidence            1 1111222345678999999988899999999999999999997 999997532111 0   0000000 0      00


Q ss_pred             cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          769 KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       769 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ...+..   ...++.+++.+||+.||++||++.++++.|+++
T Consensus       334 ~~~~~~---~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         334 MSRPDF---APPEIYSIMKMCWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             ccCCCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            011111   235677788899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=5.7e-38  Score=332.23  Aligned_cols=264  Identities=23%  Similarity=0.302  Sum_probs=197.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|.. .+++.||+|++......         .....+.+|+.++++++||||+++++++...
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~---------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~   75 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE---------GAPCTAIREVSLLKNLKHANIVTLHDIIHTE   75 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccC---------CcchhHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            4578889999999999999955 47899999998543211         1124567899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||++ |+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||++++++.+||+|||+++
T Consensus        76 ~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~  151 (288)
T cd07871          76 RCLTLVFEYLD-SDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHK---RKILHRDLKPQNLLINEKGELKLADFGLAR  151 (288)
T ss_pred             CeEEEEEeCCC-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEECcCccee
Confidence            99999999997 59999887665568899999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh-hhcccc-
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI-KVDTKE-  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~-  761 (840)
                      ....   .........+++.|+|||.+.+ ..++.++||||+||++|||++|+.||....... ......+. .....+ 
T Consensus       152 ~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~  227 (288)
T cd07871         152 AKSV---PTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKE-ELHLIFRLLGTPTEET  227 (288)
T ss_pred             eccC---CCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCChHH
Confidence            5432   1122234568899999998865 568999999999999999999999997532111 00000000 000000 


Q ss_pred             --------chhhhcccccCCC-----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 --------GIMEVLDKKLSGS-----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 --------~~~~~~~~~~~~~-----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                              .......+.....     ......+..+++.+|++.||.+|||++|++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~h  285 (288)
T cd07871         228 WPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRH  285 (288)
T ss_pred             hhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                    0000010110000     01123456788999999999999999999865

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.7e-37  Score=322.70  Aligned_cols=252  Identities=23%  Similarity=0.299  Sum_probs=201.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||.|.+.++..||||.+.....           ....+.+|+.++++++||||+++++++.+..
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~-----------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   72 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----------SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQR   72 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc-----------cHHHHHHHHHHHhcCCCCCeeeEEEEEccCC
Confidence            45778889999999999999888777899998753221           1346889999999999999999999999988


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++......+++..+..++.|++.|++|||+   .+++|+||||+||++++++.+||+|||.++.
T Consensus        73 ~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~d~g~~~~  149 (256)
T cd05113          73 PIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLES---KQFIHRDLAARNCLVDDQGCVKVSDFGLSRY  149 (256)
T ss_pred             CcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCCEEECCCcccee
Confidence            8999999999999999998755578999999999999999999999   9999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....  .........++..|+|||...+..++.++||||||+++|||++ |+.||.....  ......   ....     
T Consensus       150 ~~~~--~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~--~~~~~~---~~~~-----  217 (256)
T cd05113         150 VLDD--EYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN--SETVEK---VSQG-----  217 (256)
T ss_pred             cCCC--ceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHH---HhcC-----
Confidence            5331  1111122345678999999988889999999999999999999 9999864211  111000   0000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                           ............+.+++.+||+.+|++||++.++++.++
T Consensus       218 -----~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         218 -----LRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             -----CCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence                 000001112456778888999999999999999998874

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2e-37  Score=323.53  Aligned_cols=254  Identities=25%  Similarity=0.377  Sum_probs=203.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.|+..++||+|+||.||+|...++..||+|.+....           ...+.+.+|+.++++++|+||+++++++.+..
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-----------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   74 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-----------MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEE   74 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-----------hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            5678889999999999999988888899999874321           12457889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++... ...+++.++..++.|++.|++|||+   .+++||||||+||+++.++.++|+|||++.
T Consensus        75 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~  151 (261)
T cd05072          75 PIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLAR  151 (261)
T ss_pred             CcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEecCCCcEEECCCccce
Confidence            999999999999999998754 3468899999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  .........++..|+|||++....++.++||||||+++|||++ |+.||.....  .....+..    ..   
T Consensus       152 ~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~--~~~~~~~~----~~---  220 (261)
T cd05072         152 VIEDN--EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSN--SDVMSALQ----RG---  220 (261)
T ss_pred             ecCCC--ceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCH--HHHHHHHH----cC---
Confidence            65331  1111223345678999999988889999999999999999998 9999965311  11111110    00   


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                         .   ..+.......++.+++.+|+..+|++||+++++.+.|+++
T Consensus       221 ---~---~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         221 ---Y---RMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             ---C---CCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence               0   0011112334677888999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.8e-38  Score=330.50  Aligned_cols=252  Identities=23%  Similarity=0.324  Sum_probs=209.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+++|+|+||.++.+..+ ++..+++|.+...+...        ...+..+.|+.+++++.|||||.+.+.|.++
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~--------~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~   75 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTE--------PERRSAIQEMDLLSKLLHPNIVEYKDSFEED   75 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCc--------hhhHHHHHHHHHHHhccCCCeeeeccchhcC
Confidence            46777889999999999998554 67899999986554331        2233678899999999999999999999998


Q ss_pred             cc-ceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          605 YC-NLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       605 ~~-~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ++ .+|||+|++||++.+.+.+.. ..++++.+..|+.|++.|+.|||+   .+|+|||||+.||+++.+..|||+|||+
T Consensus        76 ~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~---~~iLHRDlK~~Nifltk~~~VkLgDfGl  152 (426)
T KOG0589|consen   76 GQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHE---NRVLHRDLKCANIFLTKDKKVKLGDFGL  152 (426)
T ss_pred             CceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh---hhhhcccchhhhhhccccCceeecchhh
Confidence            88 899999999999999998765 679999999999999999999998   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      |+.+...   ........||+.||+||.+.+..|..|+||||+||++|||++-+++|.....  ..+             
T Consensus       153 aK~l~~~---~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m--~~L-------------  214 (426)
T KOG0589|consen  153 AKILNPE---DSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNM--SEL-------------  214 (426)
T ss_pred             hhhcCCc---hhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccch--HHH-------------
Confidence            9998542   2245667899999999999999999999999999999999999999976310  001             


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      +..+......+.......++..++..|++.+|..||++.+++.+
T Consensus       215 i~ki~~~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  215 ILKINRGLYSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             HHHHhhccCCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence            11222222233334455566777789999999999999999987

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=2.4e-37  Score=327.10  Aligned_cols=257  Identities=26%  Similarity=0.421  Sum_probs=203.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|+..+.||+|+||.||+|....      ...||+|.+....         .......+.+|+.++++++||||+++++
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~---------~~~~~~~~~~ei~~l~~l~h~~i~~~~~   75 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA---------EPKVQQEFRQEAELMSDLQHPNIVCLLG   75 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC---------CHHHHHHHHHHHHHHHhcCCcccceEEE
Confidence            467788899999999999996543      2579999874322         1233567899999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKS  664 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~  664 (840)
                      ++......+++|||+++|+|.+++....               ..+++.++..++.|++.||+|||+   .+++||||||
T Consensus        76 ~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp  152 (283)
T cd05048          76 VCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSS---HHFVHRDLAA  152 (283)
T ss_pred             EEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccc
Confidence            9999889999999999999999987541               357889999999999999999999   9999999999


Q ss_pred             CCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCC
Q 003199          665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF  743 (840)
Q Consensus       665 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~  743 (840)
                      +||++++++.++|+|||+++...... .........+++.|+|||++.+..++.++|||||||++|||++ |..||.+..
T Consensus       153 ~Nil~~~~~~~~L~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~  231 (283)
T cd05048         153 RNCLVGEGLTVKISDFGLSRDIYSAD-YYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFS  231 (283)
T ss_pred             ceEEEcCCCcEEECCCcceeeccccc-cccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999997653321 1122234456788999999988899999999999999999998 999987531


Q ss_pred             CCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .  ......             +..............++.+++.+||+.||++||++.||+++|+.+
T Consensus       232 ~--~~~~~~-------------i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         232 N--QEVIEM-------------IRSRQLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             H--HHHHHH-------------HHcCCcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence            1  111110             111111111223456778888999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-37  Score=336.78  Aligned_cols=256  Identities=23%  Similarity=0.314  Sum_probs=202.6

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||+|... +|+.||||++.....       ........+.+|++++..++||||+++++++.+..
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~   74 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLL-------FKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDE   74 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHH-------hhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCC
Confidence            5778889999999999999665 689999999853321       11233467889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~  150 (333)
T cd05600          75 YLYLAMEYVPGGDFRTLLNNLG-VLSEDHARFYMAEMFEAVDALHE---LGYIHRDLKPENFLIDASGHIKLTDFGLSKG  150 (333)
T ss_pred             EEEEEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEEEeCcCCcc
Confidence            9999999999999999997654 68899999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...      ......||+.|+|||++.+..++.++|||||||++|||++|+.||......  .  .+..... ....   
T Consensus       151 ~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~--~--~~~~i~~-~~~~---  216 (333)
T cd05600         151 IVT------YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPN--E--TWENLKY-WKET---  216 (333)
T ss_pred             ccc------ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHH--H--HHHHHHh-cccc---
Confidence            532      233457999999999999989999999999999999999999999753211  0  0100000 0000   


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ...+...........++.+++.+|+..+|.+||++.+++++-
T Consensus       217 ~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h~  258 (333)
T cd05600         217 LQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNHP  258 (333)
T ss_pred             ccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhCc
Confidence            000000000012345667788899999999999999999873

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=9.5e-38  Score=337.07  Aligned_cols=249  Identities=22%  Similarity=0.285  Sum_probs=199.6

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-C-CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-S-GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      .++|...+.||+|+||.||+|... + +..||+|++.....       ......+.+.+|+++++.++||||+++++++.
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~  101 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKI-------IKQKQVDHVFSERKILNYINHPFCVNLYGSFK  101 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHh-------hhhhhHHHHHHHHHHHHhCCCCCCcceEEEEE
Confidence            356888899999999999999654 3 36899998843221       11223456889999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      +....++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus       102 ~~~~~~lv~Ey~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~ikL~DFG~  177 (340)
T PTZ00426        102 DESYLYLVLEFVIGGEFFTFLRRNK-RFPNDVGCFYAAQIVLIFEYLQS---LNIVYRDLKPENLLLDKDGFIKMTDFGF  177 (340)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEecCCC
Confidence            9999999999999999999998764 68999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ++....      ......||+.|+|||++.+..++.++|||||||++|||++|+.||....    ....+... ...   
T Consensus       178 a~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~----~~~~~~~i-~~~---  243 (340)
T PTZ00426        178 AKVVDT------RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANE----PLLIYQKI-LEG---  243 (340)
T ss_pred             CeecCC------CcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCC----HHHHHHHH-hcC---
Confidence            976522      1234579999999999998889999999999999999999999997531    11111110 000   


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                           ....+...   ...+.+++.+|++.||++|+     ++++++++
T Consensus       244 -----~~~~p~~~---~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        244 -----IIYFPKFL---DNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             -----CCCCCCCC---CHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence                 00112222   23456788899999999995     89999887

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=1.4e-37  Score=334.34  Aligned_cols=245  Identities=24%  Similarity=0.318  Sum_probs=194.9

Q ss_pred             CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEE
Q 003199          532 NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV  610 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV  610 (840)
                      +.||+|+||.||+|.. .+|+.||+|++......       .......+.+|+++++.++||||+++++++...+..++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv   73 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVII-------AKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   73 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-------hhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEE
Confidence            4699999999999965 47899999998543211       122345677899999999999999999999999999999


Q ss_pred             EeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccC
Q 003199          611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG  690 (840)
Q Consensus       611 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~  690 (840)
                      |||+++|+|..++.... .+++..+..++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+++....  
T Consensus        74 ~E~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~--  147 (323)
T cd05595          74 MEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS--  147 (323)
T ss_pred             EeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEEcCCCCEEecccHHhccccC--
Confidence            99999999999887654 68999999999999999999999   9999999999999999999999999999875322  


Q ss_pred             CCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       691 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                       .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  ...  .... ..        ....
T Consensus       148 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~--~~~--~~~~-~~--------~~~~  213 (323)
T cd05595         148 -DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--ERL--FELI-LM--------EEIR  213 (323)
T ss_pred             -CCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCH--HHH--HHHH-hc--------CCCC
Confidence             11223345799999999999988999999999999999999999999964311  000  0000 00        0011


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      ++..+   ...+.+++.+|++.||++||     ++.+++++
T Consensus       214 ~p~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h  251 (323)
T cd05595         214 FPRTL---SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  251 (323)
T ss_pred             CCCCC---CHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcC
Confidence            12222   34566778899999999998     89998875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.6e-37  Score=334.45  Aligned_cols=245  Identities=25%  Similarity=0.307  Sum_probs=195.6

Q ss_pred             CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEE
Q 003199          532 NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV  610 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV  610 (840)
                      +.||+|+||.||++.. .+|+.||||++.....       ........+.+|+.+++.++||||+++++++...+..++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   73 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVI-------IAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFV   73 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-------hhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEE
Confidence            4699999999999955 4789999999854321       1122345678899999999999999999999999999999


Q ss_pred             EeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccC
Q 003199          611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG  690 (840)
Q Consensus       611 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~  690 (840)
                      |||+++|+|.+++.... .+++.++..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||+++....  
T Consensus        74 ~Ey~~~g~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~--  147 (328)
T cd05593          74 MEYVNGGELFFHLSRER-VFSEDRTRFYGAEIVSALDYLHS---GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGIT--  147 (328)
T ss_pred             EeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeEECCCCcEEEecCcCCccCCC--
Confidence            99999999999887654 68999999999999999999999   9999999999999999999999999999875321  


Q ss_pred             CCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       691 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                       .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  .   ........        .+..
T Consensus       148 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~--~---~~~~~~~~--------~~~~  213 (328)
T cd05593         148 -DAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--E---KLFELILM--------EDIK  213 (328)
T ss_pred             -cccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH--H---HHHHHhcc--------CCcc
Confidence             11223345799999999999988999999999999999999999999965311  0   11100000        0111


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      ++..+   ..++.+++.+|++.||++||     ++.+++++
T Consensus       214 ~p~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         214 FPRTL---SADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             CCCCC---CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence            22222   34566777899999999997     89999876

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=4.6e-38  Score=327.30  Aligned_cols=249  Identities=33%  Similarity=0.506  Sum_probs=190.9

Q ss_pred             cCeeeccCCcEEEEEEeC-----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          531 KNKVGQGGSGTVYKIDLN-----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .+.||.|+||.||+|.+.     .+..|+||++....         .....+.+.+|++.+++++||||++++|++....
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~---------~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~   74 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSS---------SEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENE   74 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTS---------SHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSS
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEecccc---------ccccceeeeecccccccccccccccccccccccc
Confidence            468999999999999776     35789999984322         1233678899999999999999999999999888


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++|+||+++|+|.+++... ...+++.++..|+.|+++||+|||+   .+++|+||+++||++++++.+||+|||++.
T Consensus        75 ~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~---~~iiH~~l~~~nill~~~~~~Kl~~f~~~~  151 (259)
T PF07714_consen   75 PLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHS---NNIIHGNLSPSNILLDSNGQVKLSDFGLSR  151 (259)
T ss_dssp             SEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEEETTTEEEEESTTTGE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence            899999999999999999987 5579999999999999999999999   899999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ..... ..........+...|+|||.+.+..++.++||||||+++|||++ |+.||.+.  ....   +..         
T Consensus       152 ~~~~~-~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~--~~~~---~~~---------  216 (259)
T PF07714_consen  152 PISEK-SKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY--DNEE---IIE---------  216 (259)
T ss_dssp             ETTTS-SSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS--CHHH---HHH---------
T ss_pred             ccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc---ccc---------
Confidence            66221 11122233456789999999988889999999999999999999 78898653  1111   111         


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                       .+.+.............+.+++.+||+.||++||++.++++.|
T Consensus       217 -~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  217 -KLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             -HHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             -cccccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence             1111111111112344567788899999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=1.2e-37  Score=330.19  Aligned_cols=265  Identities=21%  Similarity=0.240  Sum_probs=198.9

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||+|..+ +++.||||++......        ....+.+.+|+++++.++||||+++++++...+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   73 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEEN--------EEVKETTLRELKMLRTLKQENIVELKEAFRRRG   73 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEeccccc--------ccchhhHHHHHHHHHhCCCccccchhhhEecCC
Confidence            5778889999999999999665 6889999998543211        123456788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||++++.+..+... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++..
T Consensus        74 ~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~  149 (287)
T cd07848          74 KLYLVFEYVEKNMLELLEEM-PNGVPPEKVRSYIYQLIKAIHWCHK---NDIVHRDIKPENLLISHNDVLKLCDFGFARN  149 (287)
T ss_pred             EEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeeccCccc
Confidence            99999999998776654433 3468999999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc-------
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD-------  758 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~-------  758 (840)
                      ....  .........|++.|+|||++.+..++.++|||||||++|||++|+.||....... ...........       
T Consensus       150 ~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~  226 (287)
T cd07848         150 LSEG--SNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEID-QLFTIQKVLGPLPAEQMK  226 (287)
T ss_pred             cccc--ccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhhCCCCHHHHH
Confidence            6331  1222334568999999999988889999999999999999999999997532111 00000000000       


Q ss_pred             --cccc-hhhhccccc--CCC-----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 --TKEG-IMEVLDKKL--SGS-----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 --~~~~-~~~~~~~~~--~~~-----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        .... ......+..  ...     .......+.+++.+|++.||++|||++|++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~h  284 (287)
T cd07848         227 LFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNH  284 (287)
T ss_pred             hhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence              0000 000000000  000     01123568889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=6e-37  Score=320.82  Aligned_cols=257  Identities=28%  Similarity=0.354  Sum_probs=204.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||+||+|.++.    ...||||.+....         .......+.+|+.++++++||||+++++++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~---------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   74 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS---------SDKQRLDFLTEASIMGQFDHPNIIRLEGVV   74 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC---------ChHHHHHHHHHHHHHHhCCCCCcceEeEEE
Confidence            467888999999999999997642    4579999874322         123356788999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ......++||||+++++|.+++......+++..+..++.|++.|++|||+   ++|+||||||+||++++++.++++|||
T Consensus        75 ~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~di~p~nili~~~~~~~l~dfg  151 (266)
T cd05033          75 TKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFG  151 (266)
T ss_pred             ecCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCCEEECccc
Confidence            99999999999999999999998765578999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++...... .........++..|+|||.+.+..++.++||||||+++|||++ |..||....  ........       
T Consensus       152 ~~~~~~~~~-~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~--~~~~~~~~-------  221 (266)
T cd05033         152 LSRRLEDSE-ATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS--NQDVIKAV-------  221 (266)
T ss_pred             hhhcccccc-cceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC--HHHHHHHH-------
Confidence            998774211 1111222345678999999998899999999999999999998 999986421  11111100       


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                            ......+........+.+++.+|++.+|++||++.|++++|+++
T Consensus       222 ------~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         222 ------EDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             ------HcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                  00000011112345677889999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=3.2e-37  Score=332.98  Aligned_cols=264  Identities=25%  Similarity=0.368  Sum_probs=202.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|... +|..||+|.+....         .......+.+|++++++++||||+++++++...
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   75 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI---------KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD   75 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc---------CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC
Confidence            46788899999999999999655 78899999884321         123356789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++|+|.+++.... .+++..+..++.|++.||.|||+.  .+|+||||||+||+++.++.+||+|||++.
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  152 (331)
T cd06649          76 GEISICMEHMDGGSLDQVLKEAK-RIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (331)
T ss_pred             CEEEEEeecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCcccc
Confidence            99999999999999999997754 689999999999999999999982  369999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh-hcccc--
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK-VDTKE--  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~-~~~~~--  761 (840)
                      ....     .......||+.|+|||++.+..++.++|||||||++|||++|+.||......  ......... .....  
T Consensus       153 ~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~  225 (331)
T cd06649         153 QLID-----SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAK--ELEAIFGRPVVDGEEGE  225 (331)
T ss_pred             cccc-----cccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHhcccccccccCC
Confidence            6532     1223456899999999999889999999999999999999999999643210  000000000 00000  


Q ss_pred             --------------------------ch---hh-hcccccCCC-cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          762 --------------------------GI---ME-VLDKKLSGS-FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       762 --------------------------~~---~~-~~~~~~~~~-~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                                                ..   .. ......... ......++.+++.+||+.||++|||+.|++++-.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~  303 (331)
T cd06649         226 PHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTF  303 (331)
T ss_pred             ccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcChH
Confidence                                      00   00 000000000 0113356788999999999999999999998853

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=3.5e-37  Score=330.90  Aligned_cols=259  Identities=24%  Similarity=0.325  Sum_probs=201.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc----EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE----VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      .+|+..+.||+|+||.||+|.+. +|+    .||||++....         .....+.+.+|+.+++.++||||++++++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~e~~~l~~l~h~niv~~~g~   77 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---------SPKANKEILDEAYVMASVDNPHVCRLLGI   77 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccC---------CHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            45788899999999999999653 344    38999874321         12334678899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      |... ..++|+||+++|+|.+++......+++..+..++.||+.||+|||+   .+|+||||||+||++++++.+||+||
T Consensus        78 ~~~~-~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~iiH~dlkp~Nill~~~~~~kl~Df  153 (316)
T cd05108          78 CLTS-TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEE---RRLVHRDLAARNVLVKTPQHVKITDF  153 (316)
T ss_pred             EcCC-CceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheEecCCCcEEEccc
Confidence            9764 5679999999999999998866678999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+++.+.... .........++..|+|||++.+..++.++||||||+++|||++ |+.||.+...  .   .+...... 
T Consensus       154 G~a~~~~~~~-~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~--~---~~~~~~~~-  226 (316)
T cd05108         154 GLAKLLGADE-KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--S---EISSILEK-  226 (316)
T ss_pred             cccccccCCC-cceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH--H---HHHHHHhC-
Confidence            9998764321 1111122334678999999999999999999999999999998 9999865311  0   11110000 


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      .         ...+........+.+++.+||..+|++||++.+++..+.++...
T Consensus       227 ~---------~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~  271 (316)
T cd05108         227 G---------ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  271 (316)
T ss_pred             C---------CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcC
Confidence            0         00011111234577888999999999999999999999866543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-37  Score=332.25  Aligned_cols=243  Identities=24%  Similarity=0.316  Sum_probs=193.0

Q ss_pred             eeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       534 lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      ||+|+||.||+|... +++.||+|++.....       ........+.+|+.++++++||||+++++++......++|||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~-------~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   73 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHI-------VSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLA   73 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHh-------hhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEc
Confidence            699999999999654 688999999843221       112334667889999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCC
Q 003199          613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK  692 (840)
Q Consensus       613 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  692 (840)
                      |+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++....   .
T Consensus        74 ~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~---~  146 (312)
T cd05585          74 FINGGELFHHLQREG-RFDLSRARFYTAELLCALENLHK---FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMK---D  146 (312)
T ss_pred             CCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHeEECCCCcEEEEECcccccCcc---C
Confidence            999999999997754 68999999999999999999999   9999999999999999999999999999875422   1


Q ss_pred             CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccC
Q 003199          693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS  772 (840)
Q Consensus       693 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  772 (840)
                      ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+..     ...........        ...++
T Consensus       147 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~-----~~~~~~~~~~~--------~~~~~  213 (312)
T cd05585         147 DDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDEN-----VNEMYRKILQE--------PLRFP  213 (312)
T ss_pred             CCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCC-----HHHHHHHHHcC--------CCCCC
Confidence            122344579999999999999899999999999999999999999997531     11111111100        01112


Q ss_pred             CCcHHHHHHHHHHHHHccCCCCCCCCC---HHHHHHH
Q 003199          773 GSFRDEMIQVLRIAIRCTSKSPATRPT---MNEVVQL  806 (840)
Q Consensus       773 ~~~~~~~~~l~~l~~~cl~~dP~~Rps---~~evl~~  806 (840)
                      ..   ....+.+++.+|++.||++||+   +.|++++
T Consensus       214 ~~---~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~h  247 (312)
T cd05585         214 DG---FDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNH  247 (312)
T ss_pred             Cc---CCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcC
Confidence            22   2345667788999999999975   6777665

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.8e-37  Score=319.96  Aligned_cols=254  Identities=28%  Similarity=0.377  Sum_probs=202.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.|+..+.||+|++|.||+|...+++.||+|.+.....           ..+.+.+|++++++++|+||+++++++....
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~-----------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   74 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM-----------DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEE   74 (261)
T ss_pred             hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc-----------cHHHHHHHHHHHHHCCCCCccceeEEEecCC
Confidence            45778899999999999999887788999998843221           1356888999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++.... ..+++..+..++.|++.|+.|||+   .+++||||||+||++++++.++|+|||+++
T Consensus        75 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~  151 (261)
T cd05068          75 PIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEA---QNYIHRDLAARNVLVGENNICKVADFGLAR  151 (261)
T ss_pred             CeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCcceEEEcCCCCEEECCcceEE
Confidence            9999999999999999997643 468999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  ..........+..|+|||++.+..++.++||||||+++|||++ |+.||.....    ...+...  ....  
T Consensus       152 ~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~----~~~~~~~--~~~~--  221 (261)
T cd05068         152 VIKED--IYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN----AEVLQQV--DQGY--  221 (261)
T ss_pred             EccCC--cccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHH--HcCC--
Confidence            76421  1111112223457999999998899999999999999999999 9999865311    0001100  0000  


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                          .   .+........+.+++.+|++.+|++||++.++++.|+++
T Consensus       222 ----~---~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         222 ----R---MPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             ----C---CCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence                0   001112345677888999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=311.36  Aligned_cols=266  Identities=24%  Similarity=0.300  Sum_probs=202.3

Q ss_pred             HHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCC-cceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN-IVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~  602 (840)
                      ...|...++||+|+||+||+| ...+|+.||+|++.......        ..-....+|+.++++++|+| ||++++++.
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~E--------G~P~taiREisllk~L~~~~~iv~L~dv~~   81 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEE--------GVPSTAIREISLLKRLSHANHIVRLHDVIH   81 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEecccccc--------CCCchhhHHHHHHHHhCCCcceEEEEeeee
Confidence            455666778999999999999 55689999999996654321        12234568999999999999 999999998


Q ss_pred             cCc------cceEEEeecCCCChHHHhhcCC---CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          603 SLY------CNLLVYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       603 ~~~------~~~lV~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      ...      ..++|+||+ .-+|.+++....   ...+...+..+++|+++||+|||+   ++|+||||||.||+++++|
T Consensus        82 ~~~~~~~~~~l~lvfe~~-d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~---~~IlHRDLKPQNlLi~~~G  157 (323)
T KOG0594|consen   82 TSNNHRGIGKLYLVFEFL-DRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHS---HGILHRDLKPQNLLISSSG  157 (323)
T ss_pred             ecccccccceEEEEEEee-cccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCcceEEECCCC
Confidence            877      778999999 569999998765   357778899999999999999999   9999999999999999999


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhh
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW  752 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~  752 (840)
                      .+||+|||+|+.+.-   .....+...+|..|.|||++.+. .|+...||||+|||++||++++.-|.+..+. ..+...
T Consensus       158 ~lKlaDFGlAra~~i---p~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~-~ql~~I  233 (323)
T KOG0594|consen  158 VLKLADFGLARAFSI---PMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEI-DQLFRI  233 (323)
T ss_pred             cEeeeccchHHHhcC---CcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHH-HHHHHH
Confidence            999999999997642   23345667889999999999887 6899999999999999999999888764321 111111


Q ss_pred             hh-hhhccccchhhhc---cc--cc-----CCCcHH----HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          753 VS-IKVDTKEGIMEVL---DK--KL-----SGSFRD----EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       753 ~~-~~~~~~~~~~~~~---~~--~~-----~~~~~~----~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+ ........+..+.   +-  ..     ...+..    ......+++.+|++.+|.+|.|++.++.|
T Consensus       234 f~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  234 FRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             HHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence            00 0111111111111   00  00     111111    12467889999999999999999999987

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=4e-37  Score=334.35  Aligned_cols=265  Identities=24%  Similarity=0.332  Sum_probs=195.7

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC-
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-  604 (840)
                      +|+..+.||+|+||.||+|.. .+|+.||||++......        ......+.+|+++++.++||||+++++++... 
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   72 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEH--------VSDATRILREIKLLRLLRHPDIVEIKHIMLPPS   72 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhcc--------chhHHHHHHHHHHHHhCCCCCEeeecceEeccC
Confidence            367788999999999999954 57899999988532111        12235678999999999999999999987543 


Q ss_pred             ----ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          605 ----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       605 ----~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                          ...++||||+. ++|.+++.... .+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        73 ~~~~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kL~Df  147 (338)
T cd07859          73 RREFKDIYVVFELME-SDLHQVIKAND-DLTPEHHQFFLYQLLRALKYIHT---ANVFHRDLKPKNILANADCKLKICDF  147 (338)
T ss_pred             CCCCceEEEEEecCC-CCHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEccC
Confidence                24699999995 78999887654 68999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh----
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS----  754 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~----  754 (840)
                      |+++................||+.|+|||++.+  ..++.++|||||||++|||++|+.||.+....  .......    
T Consensus       148 g~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~--~~~~~~~~~~~  225 (338)
T cd07859         148 GLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVV--HQLDLITDLLG  225 (338)
T ss_pred             ccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChH--HHHHHHHHHhC
Confidence            999765332222222344579999999998865  67899999999999999999999999753210  0000000    


Q ss_pred             ---------hhhccccchhhhcccccC----CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          755 ---------IKVDTKEGIMEVLDKKLS----GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       755 ---------~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                               ..................    ..+......+.+++.+|++.||++|||++|++++
T Consensus       226 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         226 TPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             CCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                     000000000000000000    0111123456788999999999999999999987

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=4.8e-37  Score=337.02  Aligned_cols=260  Identities=23%  Similarity=0.338  Sum_probs=201.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|...      .+..||||++.....         ....+.+.+|+++++++. ||||++++
T Consensus        37 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---------~~~~~~~~~Ei~~l~~l~~HpnIv~l~  107 (400)
T cd05105          37 DGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR---------SSEKQALMSELKIMTHLGPHLNIVNLL  107 (400)
T ss_pred             cceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC---------hHHHHHHHHHHHHHHhcCCCCCeeeEE
Confidence            46778899999999999998642      234799999843321         223467899999999996 99999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC---------------------------------------------------
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------------------------------------------  627 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------------------------------------------  627 (840)
                      +++.+....++||||+++|+|.+++....                                                   
T Consensus       108 ~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (400)
T cd05105         108 GACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQ  187 (400)
T ss_pred             EEEccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccc
Confidence            99999999999999999999999886421                                                   


Q ss_pred             --------------------------------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCC
Q 003199          628 --------------------------------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIK  663 (840)
Q Consensus       628 --------------------------------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk  663 (840)
                                                                  ..+++..+..++.|++.||+|||+   .+|+|||||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dik  264 (400)
T cd05105         188 YVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLAS---KNCVHRDLA  264 (400)
T ss_pred             cchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCC
Confidence                                                        247788899999999999999999   999999999


Q ss_pred             CCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCC
Q 003199          664 STNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD  742 (840)
Q Consensus       664 ~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~  742 (840)
                      |+||+++.++.+||+|||+++...... .........++..|+|||.+.+..++.++|||||||++|||++ |..||...
T Consensus       265 p~Nill~~~~~~kL~DfGla~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~  343 (400)
T cd05105         265 ARNVLLAQGKIVKICDFGLARDIMHDS-NYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGM  343 (400)
T ss_pred             hHhEEEeCCCEEEEEeCCcceeccccc-cccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCccc
Confidence            999999999999999999997653311 1112233456788999999988899999999999999999997 99998753


Q ss_pred             CCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      ..... .  +..  ...         .............+.+++.+||+.||++||++.++.+.|+++-+
T Consensus       344 ~~~~~-~--~~~--~~~---------~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         344 IVDST-F--YNK--IKS---------GYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             chhHH-H--HHH--Hhc---------CCCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence            21110 0  000  000         00001112234567788999999999999999999999987543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2.8e-37  Score=329.69  Aligned_cols=264  Identities=23%  Similarity=0.295  Sum_probs=197.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|... +|+.||||++......         .....+.+|+.+++.++||||+++++++.+.
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~   75 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEE---------GTPFTAIREASLLKGLKHANIVLLHDIIHTK   75 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEecccccc---------ccchhHHHHHHHHhhCCCCCcCeEEEEEecC
Confidence            56788899999999999999665 7899999998533211         1123567899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||++ +++.+++......+++..+..++.|++.||+|||+   ++|+||||||+||++++++.+||+|||+++
T Consensus        76 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  151 (303)
T cd07869          76 ETLTLVFEYVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQ---RYILHRDLKPQNLLISDTGELKLADFGLAR  151 (303)
T ss_pred             CeEEEEEECCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECCCCcce
Confidence            99999999995 68888887765578999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc--cc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT--KE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~--~~  761 (840)
                      ....   .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+...... ...........  ..
T Consensus       152 ~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~  227 (303)
T cd07869         152 AKSV---PSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQD-QLERIFLVLGTPNED  227 (303)
T ss_pred             eccC---CCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHH-HHHHHHHHhCCCChh
Confidence            5422   1222334568899999998765 4578899999999999999999999975321111 00000000000  00


Q ss_pred             ch----------hhhcccccCCCcHH------HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GI----------MEVLDKKLSGSFRD------EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~----------~~~~~~~~~~~~~~------~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..          .+............      ....+.+++.+|++.||++|||+.|++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h  288 (303)
T cd07869         228 TWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSH  288 (303)
T ss_pred             hccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhcC
Confidence            00          00000000001111      12356688889999999999999999975

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.9e-37  Score=318.87  Aligned_cols=252  Identities=24%  Similarity=0.328  Sum_probs=199.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .+|+..+.||+|+||.||+|..+++..+|+|.+.....           ....+.+|++++++++|+||+++++++....
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~-----------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM-----------SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQR   72 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC-----------CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC
Confidence            35677889999999999999888778999998743221           1245778999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++......+++..+..++.|++.|++|||+   .+++||||||+||++++++.+||+|||.++.
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~  149 (256)
T cd05059          73 PIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLES---NGFIHRDLAARNCLVGEDNVVKVSDFGLARY  149 (256)
T ss_pred             ceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCcccccccHhhEEECCCCcEEECCccccee
Confidence            9999999999999999998755578999999999999999999999   9999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....  .........++..|+|||.+.+..++.++||||||+++|||++ |+.||.....  ...  +....        
T Consensus       150 ~~~~--~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~--~~~~~--------  215 (256)
T cd05059         150 VLDD--QYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN--SEV--VESVS--------  215 (256)
T ss_pred             cccc--cccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH--HHH--HHHHH--------
Confidence            5321  1111112234457999999998899999999999999999999 8999864311  111  11100        


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .........   ....++.+++.+||..+|++|||+.|+++.|.
T Consensus       216 ~~~~~~~~~---~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l~  256 (256)
T cd05059         216 AGYRLYRPK---LAPTEVYTIMYSCWHEKPEDRPAFKKLLSQLT  256 (256)
T ss_pred             cCCcCCCCC---CCCHHHHHHHHHHhcCChhhCcCHHHHHHHhC
Confidence            000111111   23456778888999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=7.9e-37  Score=319.30  Aligned_cols=254  Identities=25%  Similarity=0.308  Sum_probs=200.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|...+.||+|++|.||+|... +++.||+|.+....           ...+.+.+|++++++++|+|++++++++...
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-----------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   74 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----------MEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE   74 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc-----------hHHHHHHHHHHHHHhCCCCChhheEEEEcCC
Confidence            35677889999999999998654 68899999874221           1245688899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+++++|.+++... ...+++..+..++.|++.||+|||+   .+++||||||+||++++++.+||+|||.+
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~df~~~  151 (263)
T cd05052          75 PPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLS  151 (263)
T ss_pred             CCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCcEEeCCCccc
Confidence            9999999999999999998754 3468999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ......  .........++..|+|||.+.+..++.++|||||||++|||++ |..||.....     .........    
T Consensus       152 ~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~-----~~~~~~~~~----  220 (263)
T cd05052         152 RLMTGD--TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-----SQVYELLEK----  220 (263)
T ss_pred             cccccc--eeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHHC----
Confidence            765431  1111122334668999999988899999999999999999998 9999864211     111111000    


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                         ........   .....+.+++.+|++.+|++||++.++.+.|+.+
T Consensus       221 ---~~~~~~~~---~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         221 ---GYRMERPE---GCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             ---CCCCCCCC---CCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence               00111111   2235677788899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=8e-38  Score=293.44  Aligned_cols=261  Identities=22%  Similarity=0.280  Sum_probs=203.3

Q ss_pred             HhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|++.+.+|+|+|+.||.++ ..++..+|+|++.-..          .+..+...+|++..++++|||+++++++....
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~----------~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~   90 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS----------QEDIEEALREIDNHRKFNSPNVLRLVDHQLRE   90 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccc----------hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHh
Confidence            578889999999999999995 5678999999985443          23456788999999999999999999887443


Q ss_pred             c-----cceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCe
Q 003199          605 Y-----CNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPK  676 (840)
Q Consensus       605 ~-----~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~k  676 (840)
                      .     ..|++++|...|+|.+.+...   +..+++.++++|+.+|.+||++||+.. .+++||||||.||++.+++.++
T Consensus        91 ~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~-~~yAH~DiKP~NILls~~~~~v  169 (302)
T KOG2345|consen   91 EKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKE-PPYAHRDIKPANILLSDSGLPV  169 (302)
T ss_pred             hccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccC-CcccccCCCcceeEecCCCceE
Confidence            3     479999999999999988754   346899999999999999999999832 3599999999999999999999


Q ss_pred             eecccchhhhhccCCC------CcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCc
Q 003199          677 VADFGIAKVLQARGGK------DSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK  747 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~  747 (840)
                      +.|||.++...-.-..      -........|..|.|||.+.   +...++++|||||||++|+|+.|..||+.......
T Consensus       170 l~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~Gg  249 (302)
T KOG2345|consen  170 LMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGG  249 (302)
T ss_pred             EEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCC
Confidence            9999998765321000      11224456788999999874   44678999999999999999999999986544333


Q ss_pred             chhhhhhhhhccccchhhhcccc--cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          748 NIIYWVSIKVDTKEGIMEVLDKK--LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      .+...+             ....  ++.. ......+.+++.+|++.||.+||++.+++.++.++.
T Consensus       250 SlaLAv-------------~n~q~s~P~~-~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  250 SLALAV-------------QNAQISIPNS-SRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             eEEEee-------------eccccccCCC-CCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence            222111             1111  1111 114556777888999999999999999999987654

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-37  Score=322.89  Aligned_cols=257  Identities=26%  Similarity=0.344  Sum_probs=211.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC---C--cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS---G--EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~---~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      +..+..+.||.|.||.||+|.+.+   |  -.||||..+..-         .....+.|..|..+|+.++||||++++|.
T Consensus       389 e~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~---------t~d~tekflqEa~iMrnfdHphIikLIGv  459 (974)
T KOG4257|consen  389 ELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDC---------TPDDTEKFLQEASIMRNFDHPHIIKLIGV  459 (974)
T ss_pred             hhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCC---------ChhhHHHHHHHHHHHHhCCCcchhheeee
Confidence            344566789999999999996643   3  358888774322         12336789999999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      |.+. ..|+|||.++-|.|..+++.+...++..+...++.||..||+|||+   ..+|||||..+|||+.+...+|++||
T Consensus       460 ~~e~-P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeS---krfVHRDIAaRNiLVsSp~CVKLaDF  535 (974)
T KOG4257|consen  460 CVEQ-PMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLES---KRFVHRDIAARNILVSSPQCVKLADF  535 (974)
T ss_pred             eecc-ceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh---hchhhhhhhhhheeecCcceeeeccc
Confidence            9875 5689999999999999999998889999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+++.+.+..  ....+...-+..|||||-+.-++++.+||||-|||.+||++. |..||++..+.+             
T Consensus       536 GLSR~~ed~~--yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsD-------------  600 (974)
T KOG4257|consen  536 GLSRYLEDDA--YYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSD-------------  600 (974)
T ss_pred             chhhhccccc--hhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccc-------------
Confidence            9999986632  222334445679999999999999999999999999999988 999998753221             


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                        .+..+......+..+.++..+..|+.+||..||.+||.+.|+...|+++..
T Consensus       601 --VI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  601 --VIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             --eEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence              122333334444555667788899999999999999999999998876443

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=7.3e-37  Score=323.29  Aligned_cols=268  Identities=28%  Similarity=0.352  Sum_probs=199.8

Q ss_pred             CccCeeeccCCcEEEEEEe-----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          529 TEKNKVGQGGSGTVYKIDL-----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ...+.||+|+||+||++.+     .+++.||+|.+.....         ......+.+|++++++++||||+++++++..
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   77 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG---------QQNTSGWKKEINILKTLYHENIVKYKGCCSE   77 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC---------hHHHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            6778999999999988642     3678999998843321         1234678889999999999999999998865


Q ss_pred             C--ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          604 L--YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       604 ~--~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .  ...++||||+++++|.+++...  .+++..+..++.|++.|++|||+   .+|+||||||+||++++++.++|+|||
T Consensus        78 ~~~~~~~lv~e~~~~~~l~~~~~~~--~l~~~~~~~i~~~l~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg  152 (283)
T cd05080          78 QGGKGLQLIMEYVPLGSLRDYLPKH--KLNLAQLLLFAQQICEGMAYLHS---QHYIHRDLAARNVLLDNDRLVKIGDFG  152 (283)
T ss_pred             CCCceEEEEecCCCCCCHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHH---CCeeccccChheEEEcCCCcEEEeecc
Confidence            3  4578999999999999999775  58999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +++................++..|+|||.+.+..++.++||||||+++|||++|..||............+..... ...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~  231 (283)
T cd05080         153 LAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQM-TVV  231 (283)
T ss_pred             cccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhccccccc-chh
Confidence            9986643211111122234566799999998888999999999999999999999998653221111111100000 000


Q ss_pred             chhhhcccccC-CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          762 GIMEVLDKKLS-GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       762 ~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ...+..+.... +........+.+++.+||+.+|++|||++++++.|+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         232 RLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             hhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            01111111111 111223456778888999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-39  Score=306.68  Aligned_cols=247  Identities=28%  Similarity=0.373  Sum_probs=209.1

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|.++.+||+|+||.||+| ...+|+.||||.+...            ...+++..|+.+|++++.|++|++||.|...
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~------------sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~  100 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD------------TDLQEIIKEISIMQQCKSKYVVKYYGSYFKH  100 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc------------chHHHHHHHHHHHHHcCCchhhhhhhhhccC
Confidence            34566778999999999998 5568999999987322            2356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...|+|||||..|+..+.++-....+.+.++..+..+.++||+|||.   ..-+|||||+.|||++.+|.+|++|||.|.
T Consensus       101 sDLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~---~~KIHRDIKAGNILLNT~G~AKLADFGVAG  177 (502)
T KOG0574|consen  101 SDLWIVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHD---LKKIHRDIKAGNILLNTDGIAKLADFGVAG  177 (502)
T ss_pred             CceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHH---HHHHHhhcccccEEEcccchhhhhhccccc
Confidence            99999999999999999999888899999999999999999999999   788999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+.+   .-.....+.|||.|||||++..-.|+.++||||+|+...||..|++||.+-..               ...+ 
T Consensus       178 QLTD---TMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHP---------------MRAI-  238 (502)
T KOG0574|consen  178 QLTD---TMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHP---------------MRAI-  238 (502)
T ss_pred             hhhh---hHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccc---------------ccee-
Confidence            7754   22345678999999999999999999999999999999999999999986321               1101 


Q ss_pred             hhcccccCCCc---HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSF---RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~---~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      -.+..+.++.+   +....++.+++.+|+-+.|++|-|+.++++|
T Consensus       239 FMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  239 FMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEH  283 (502)
T ss_pred             EeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence            11222233333   3445677888899999999999999998876

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=4e-37  Score=331.07  Aligned_cols=246  Identities=25%  Similarity=0.336  Sum_probs=194.6

Q ss_pred             CeeeccCCcEEEEEEe----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccc
Q 003199          532 NKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  607 (840)
                      +.||+|+||.||++..    .+++.||||++......      ........+.+|+++++.++||||+++++++......
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~------~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~   75 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIV------RNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKL   75 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHH------hhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeE
Confidence            5799999999999864    35789999998543211      1122345678899999999999999999999999999


Q ss_pred             eEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhh
Q 003199          608 LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ  687 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~  687 (840)
                      ++||||+++|+|.+++.... .+.+..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++...
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  151 (323)
T cd05584          76 YLILEYLSGGELFMHLEREG-IFMEDTACFYLSEISLALEHLHQ---QGIIYRDLKPENILLDAQGHVKLTDFGLCKESI  151 (323)
T ss_pred             EEEEeCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEeeCcCCeecc
Confidence            99999999999999997754 57888999999999999999999   999999999999999999999999999987542


Q ss_pred             ccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhc
Q 003199          688 ARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL  767 (840)
Q Consensus       688 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  767 (840)
                      ..   ........||+.|+|||++.+..++.++|||||||++|||++|+.||.....     ..........        
T Consensus       152 ~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~-----~~~~~~~~~~--------  215 (323)
T cd05584         152 HE---GTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR-----KKTIDKILKG--------  215 (323)
T ss_pred             cC---CCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH-----HHHHHHHHcC--------
Confidence            21   1222345799999999999988899999999999999999999999975311     0111100000        


Q ss_pred             ccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       768 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      ...++..   ....+.+++.+|++.||++||     ++.+++++
T Consensus       216 ~~~~~~~---~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h  256 (323)
T cd05584         216 KLNLPPY---LTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSH  256 (323)
T ss_pred             CCCCCCC---CCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcC
Confidence            0111222   234566788899999999999     88888875

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=7e-37  Score=330.38  Aligned_cols=259  Identities=28%  Similarity=0.366  Sum_probs=199.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|...      +++.||+|++.....         ....+.+..|+.++.++ +|+||++++
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~---------~~~~~~~~~E~~~~~~l~~h~niv~~~   77 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT---------ASEYKALMTELKILIHIGHHLNVVNLL   77 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC---------HHHHHHHHHHHHHHHhhccCcchhhee
Confidence            46778899999999999998432      357899998843221         12245677899999999 799999999


Q ss_pred             eEEec-CccceEEEeecCCCChHHHhhcCC--------------------------------------------------
Q 003199          599 CYFSS-LYCNLLVYEYMPNGNLWDALHKGL--------------------------------------------------  627 (840)
Q Consensus       599 ~~~~~-~~~~~lV~e~~~~gsL~~~l~~~~--------------------------------------------------  627 (840)
                      ++|.. ....++||||+++++|.+++....                                                  
T Consensus        78 ~~~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (337)
T cd05054          78 GACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVE  157 (337)
T ss_pred             eeEecCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcc
Confidence            98865 456789999999999999885421                                                  


Q ss_pred             ----------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCccee
Q 003199          628 ----------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT  697 (840)
Q Consensus       628 ----------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  697 (840)
                                ..++|..+..++.||+.||+|||+   .+|+||||||+||++++++.++|+|||+++.+.... ......
T Consensus       158 ~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~-~~~~~~  233 (337)
T cd05054         158 EDEEGDELYKEPLTLEDLISYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDP-DYVRKG  233 (337)
T ss_pred             cchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEeCCCcEEEeccccchhcccCc-chhhcc
Confidence                      257899999999999999999999   999999999999999999999999999998763311 111223


Q ss_pred             cccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcH
Q 003199          698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR  776 (840)
Q Consensus       698 ~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  776 (840)
                      ...++..|+|||++.+..++.++|||||||++|||++ |..||.+..... ...   .. ....      ......   .
T Consensus       234 ~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~-~~~---~~-~~~~------~~~~~~---~  299 (337)
T cd05054         234 DARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDE-EFC---RR-LKEG------TRMRAP---E  299 (337)
T ss_pred             CCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccH-HHH---HH-Hhcc------CCCCCC---c
Confidence            3456678999999999999999999999999999998 999997532111 000   00 0000      000011   1


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          777 DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       777 ~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ....++.+++.+||+.+|++||++.|++++|+++-
T Consensus       300 ~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~  334 (337)
T cd05054         300 YATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLL  334 (337)
T ss_pred             cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            22356778899999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-37  Score=340.45  Aligned_cols=264  Identities=23%  Similarity=0.309  Sum_probs=207.7

Q ss_pred             cCccCeeeccCCcEEEEEEeCCC-cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeE-Ee--
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNSG-EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCY-FS--  602 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~~-~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~-~~--  602 (840)
                      +++.+.|.+|+|+.||.|....+ ..||+|++...          ++.....+++||++|+.|+ |+|||.+++. ..  
T Consensus        39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~----------de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~  108 (738)
T KOG1989|consen   39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN----------DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINR  108 (738)
T ss_pred             EEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC----------CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccc
Confidence            45677899999999999976655 99999998544          2566788999999999996 9999999983 21  


Q ss_pred             ---c-CccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          603 ---S-LYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       603 ---~-~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                         . ..+.+|.||||++|.|-+++..+ ...|++.++++|+.|+++|+++||. +..+|||||||-+|||++.+++.||
T Consensus       109 ~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~-~~pPiIHRDLKiENvLls~~g~~KL  187 (738)
T KOG1989|consen  109 SSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHY-LKPPIIHRDLKIENVLLSADGNYKL  187 (738)
T ss_pred             cCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc-CCCccchhhhhhhheEEcCCCCEEe
Confidence               1 24668999999999999999854 2459999999999999999999997 4467999999999999999999999


Q ss_pred             ecccchhhhhccCCCCc------ceecccccccccCcccc---ccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          678 ADFGIAKVLQARGGKDS------TTTVIAGTYGYLAPEYA---YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~------~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                      ||||.|.-.........      ..-...-|+.|+|||++   .+...++|+|||||||+||-|+....||++...    
T Consensus       188 CDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~----  263 (738)
T KOG1989|consen  188 CDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK----  263 (738)
T ss_pred             CcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc----
Confidence            99999865432111110      01124578999999987   566889999999999999999999999986311    


Q ss_pred             hhhhhhhhhccccchhhhccccc-CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCCCCCC
Q 003199          749 IIYWVSIKVDTKEGIMEVLDKKL-SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFP  821 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~~~~~  821 (840)
                                     ..+++.++ -+.+......+..||..||++||.+||++.+|+..+.++......-.+.+
T Consensus       264 ---------------laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~~~~~~~~  322 (738)
T KOG1989|consen  264 ---------------LAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKPCPIPDIY  322 (738)
T ss_pred             ---------------eeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCCCCccccc
Confidence                           11222222 12234566677778889999999999999999999988776665444443

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=5.7e-37  Score=346.03  Aligned_cols=251  Identities=24%  Similarity=0.267  Sum_probs=197.6

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-C-CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-S-GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .|...+.||+|++|.||+|... + ++.||+|.+....          ......+.+|+.+++.++||||+++++++...
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~----------~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~  137 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLND----------ERQAAYARSELHCLAACDHFGIVKHFDDFKSD  137 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCC----------HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEEC
Confidence            3778889999999999999543 4 6788888763221          22345678899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      +..++||||+++|+|.+++...   ...+++.++..++.|++.||+|+|+   ++|+||||||+|||++.++.+||+|||
T Consensus       138 ~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~~~~~~kL~DFg  214 (478)
T PTZ00267        138 DKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHS---RKMMHRDLKSANIFLMPTGIIKLGDFG  214 (478)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCcCHHhEEECCCCcEEEEeCc
Confidence            9999999999999999887642   2358899999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +++.+.... .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....     ....        
T Consensus       215 la~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~-----~~~~--------  280 (478)
T PTZ00267        215 FSKQYSDSV-SLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ-----REIM--------  280 (478)
T ss_pred             CceecCCcc-ccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH-----HHHH--------
Confidence            998764321 11223455799999999999998999999999999999999999999964210     0000        


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        .........+........+.+++.+|++.||++||++.+++.+
T Consensus       281 --~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~  323 (478)
T PTZ00267        281 --QQVLYGKYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLHT  323 (478)
T ss_pred             --HHHHhCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHhC
Confidence              0111111111111233457778889999999999999998754

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=8.1e-37  Score=323.02  Aligned_cols=272  Identities=25%  Similarity=0.318  Sum_probs=201.9

Q ss_pred             hcCccCeeeccCCcEEEEEEe-----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .|+..+.||+|+||.||++.+     .++..||+|.+....         .....+.+.+|+++++.++|||++++++++
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~---------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   75 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES---------GGNHIADLKKEIEILRNLYHENIVKYKGIC   75 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccc---------cHHHHHHHHHHHHHHHhCCCCCeeeeeeEE
Confidence            356788999999999999863     357899999874321         123346789999999999999999999998


Q ss_pred             ecC--ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          602 SSL--YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       602 ~~~--~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      ...  ...++||||+++++|.+++.+....++|.++..++.|++.||+|||+   ++++||||||+||+++.++.++|+|
T Consensus        76 ~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~---~gi~H~dlkp~Nil~~~~~~~~l~d  152 (284)
T cd05079          76 TEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGD  152 (284)
T ss_pred             ecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccchheEEEcCCCCEEECC
Confidence            775  56789999999999999997765568999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ||+++................++..|+|||++.+..++.++||||||+++|||++++.|+....................
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd05079         153 FGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTV  232 (284)
T ss_pred             CccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccH
Confidence            99998764322211222334567789999999888899999999999999999998776533211000000000000000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .............+........+.+++.+|++.+|++||++.++++.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         233 TRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            000000001111111122345788899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-39  Score=300.62  Aligned_cols=258  Identities=23%  Similarity=0.333  Sum_probs=203.2

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..+.||+|+|+.||++ ...+|+.+|+|.+....-..        ...+.+.+|+.+-+.++||||+++...+.+.
T Consensus        11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~--------~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~   82 (355)
T KOG0033|consen   11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA--------RDFQKLEREARICRKLQHPNIVRLHDSIQEE   82 (355)
T ss_pred             hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhcc--------ccHHHHHHHHHHHHhcCCCcEeehhhhhccc
Confidence            45666678999999999997 56689999999885443221        2356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---CCCCeeeccc
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---NYQPKVADFG  681 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~Dfg  681 (840)
                      ...++|+|+|.|++|..-+-... .+++..+...+.||+++|.|+|.   ++|||||+||+|+++-+   ..-+|++|||
T Consensus        83 ~~~ylvFe~m~G~dl~~eIV~R~-~ySEa~aSH~~rQiLeal~yCH~---n~IvHRDvkP~nllLASK~~~A~vKL~~FG  158 (355)
T KOG0033|consen   83 SFHYLVFDLVTGGELFEDIVARE-FYSEADASHCIQQILEALAYCHS---NGIVHRDLKPENLLLASKAKGAAVKLADFG  158 (355)
T ss_pred             ceeEEEEecccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeeeeccCCCceeecccc
Confidence            99999999999999977655442 57788899999999999999999   99999999999999954   3358999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +|..+.    .........|||+|||||++...+|+..+|||+.|||+|-++.|.+||.++.  ..++  +.++ .... 
T Consensus       159 vAi~l~----~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~--~~rl--ye~I-~~g~-  228 (355)
T KOG0033|consen  159 LAIEVN----DGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED--QHRL--YEQI-KAGA-  228 (355)
T ss_pred             eEEEeC----CccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCcc--HHHH--HHHH-hccc-
Confidence            998875    2344566889999999999999999999999999999999999999997631  1111  1111 1110 


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                        .+ +   ..+.+........+|+.+|+..||.+|.|+.|+++|=+-.+
T Consensus       229 --yd-~---~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~  272 (355)
T KOG0033|consen  229 --YD-Y---PSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWICN  272 (355)
T ss_pred             --cC-C---CCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhcc
Confidence              00 1   12233344445566777999999999999999988755433

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=1.1e-36  Score=322.48  Aligned_cols=258  Identities=27%  Similarity=0.384  Sum_probs=202.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ..|...+.||+|+||.||++..      .++..||+|.+....          ....+.+.+|++++++++|+||+++++
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~----------~~~~~~~~~e~~~l~~l~h~~i~~~~~   74 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS----------DNARKDFHREAELLTNLQHEHIVKFYG   74 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC----------HHHHHHHHHHHHHHHhCCCCCcceEEE
Confidence            4577888999999999999864      234568999874321          233567889999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCE
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNI  667 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Ni  667 (840)
                      ++......++||||+++++|.+++....            ..+++.++..++.|++.||+|||+   ++++||||||+||
T Consensus        75 ~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~---~~i~H~dlkp~Ni  151 (288)
T cd05093          75 VCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNC  151 (288)
T ss_pred             EEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcceE
Confidence            9999999999999999999999987432            248999999999999999999999   9999999999999


Q ss_pred             EEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCC
Q 003199          668 LLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDN  746 (840)
Q Consensus       668 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~  746 (840)
                      ++++++.++|+|||+++...... .........++..|+|||++.+..++.++|||||||++|||++ |..||.....  
T Consensus       152 li~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~--  228 (288)
T cd05093         152 LVGENLLVKIGDFGMSRDVYSTD-YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN--  228 (288)
T ss_pred             EEccCCcEEeccCCccccccCCc-eeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--
Confidence            99999999999999997653211 1111223345778999999998899999999999999999998 9999864311  


Q ss_pred             cchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      .....  .           ................+.+++.+|++.||.+|||+.++.+.|+++..
T Consensus       229 ~~~~~--~-----------i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~  281 (288)
T cd05093         229 NEVIE--C-----------ITQGRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAK  281 (288)
T ss_pred             HHHHH--H-----------HHcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence            11100  0           00000101111123457889999999999999999999999988763

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=6.8e-37  Score=333.59  Aligned_cols=250  Identities=26%  Similarity=0.410  Sum_probs=192.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|... +|+.||||++....         .....+.+.+|+++++.++|+||+++++++...
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  144 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH---------EDTVRRQICREIEILRDVNHPNVVKCHDMFDHN  144 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC---------cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccC
Confidence            45566788999999999999654 78999999984322         123356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+..     ...+..+..++.||+.||+|||+   .+|+||||||+|||+++++.+||+|||+++
T Consensus       145 ~~~~lv~e~~~~~~L~~~~-----~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DfG~~~  216 (353)
T PLN00034        145 GEIQVLLEFMDGGSLEGTH-----IADEQFLADVARQILSGIAYLHR---RHIVHRDIKPSNLLINSAKNVKIADFGVSR  216 (353)
T ss_pred             CeEEEEEecCCCCcccccc-----cCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEcccccce
Confidence            9999999999999986532     35677888999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      .....   ........||..|+|||++..     ...+.++|||||||++|||++|+.||......     .|.......
T Consensus       217 ~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~-----~~~~~~~~~  288 (353)
T PLN00034        217 ILAQT---MDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQG-----DWASLMCAI  288 (353)
T ss_pred             ecccc---cccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCc-----cHHHHHHHH
Confidence            65321   112234578999999998743     23456899999999999999999999732111     111110000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                             ..............++.+++.+||+.||++||++.|++++-
T Consensus       289 -------~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~hp  329 (353)
T PLN00034        289 -------CMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQHP  329 (353)
T ss_pred             -------hccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcCc
Confidence                   00000111112334677888899999999999999999873

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=7.8e-37  Score=335.36  Aligned_cols=259  Identities=21%  Similarity=0.244  Sum_probs=196.8

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ..|...+.||+|+||.||+| +..+++.||+|...                ...+.+|++++++++||||+++++++...
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~----------------~~~~~~E~~il~~l~HpnIv~~~~~~~~~  155 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ----------------RGGTATEAHILRAINHPSIIQLKGTFTYN  155 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh----------------hhhhHHHHHHHHhCCCCCCCCEeEEEEEC
Confidence            45888999999999999999 44578999999641                13467899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|+|++. ++|..++.... .+++.++..++.|++.||+|||+   ++||||||||+||+++.++.+||+|||+|+
T Consensus       156 ~~~~lv~e~~~-~~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~ylH~---~~IvHrDiKP~NIll~~~~~vkL~DFG~a~  230 (391)
T PHA03212        156 KFTCLILPRYK-TDLYCYLAAKR-NIAICDILAIERSVLRAIQYLHE---NRIIHRDIKAENIFINHPGDVCLGDFGAAC  230 (391)
T ss_pred             CeeEEEEecCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHhEEEcCCCCEEEEeCCccc
Confidence            99999999994 78988887653 68999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCc------chhhhhhhhhc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK------NIIYWVSIKVD  758 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~------~~~~~~~~~~~  758 (840)
                      .....  .........||+.|+|||++.+..++.++|||||||++|||++|+.||....+...      .+.........
T Consensus       231 ~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~  308 (391)
T PHA03212        231 FPVDI--NANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGT  308 (391)
T ss_pred             ccccc--cccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcC
Confidence            54321  11223345799999999999988999999999999999999999988753221110      00000000000


Q ss_pred             --------cccchhhhc---------ccccCCCc---HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          759 --------TKEGIMEVL---------DKKLSGSF---RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       759 --------~~~~~~~~~---------~~~~~~~~---~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                              .........         .....+.+   .....++.+++.+|++.||++|||++|++++=
T Consensus       309 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp  377 (391)
T PHA03212        309 HPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDFA  377 (391)
T ss_pred             ChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcCh
Confidence                    000000000         00001111   12345788899999999999999999999753

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=8.5e-37  Score=307.24  Aligned_cols=255  Identities=24%  Similarity=0.331  Sum_probs=206.8

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|...+.||+|.-|+||+++.+ ++..+|+|++-+...       .......+...|-+||+.+.||.++.+|+.++.+.
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l-------~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~  150 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESL-------ASRKKLKRAQTEREILSLLDHPFLPTLYASFETDK  150 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHH-------hhhhHHHHHHHHHHHHHhcCCCccchhhheeeccc
Confidence            3445668999999999999777 458999999844332       22344567788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++|||||+||+|...++++ ...+++..++.++..|+-||+|||-   .|||+|||||+||||.++|++-|+||.++.
T Consensus       151 ~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHm---lGivYRDLKPENILvredGHIMLsDFDLS~  227 (459)
T KOG0610|consen  151 YSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHM---LGIVYRDLKPENILVREDGHIMLSDFDLSL  227 (459)
T ss_pred             eeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHh---hceeeccCCcceeEEecCCcEEeeeccccc
Confidence            999999999999999998876 4679999999999999999999999   999999999999999999999999999875


Q ss_pred             hhhcc--------------------------------CCC---------------------CcceecccccccccCcccc
Q 003199          685 VLQAR--------------------------------GGK---------------------DSTTTVIAGTYGYLAPEYA  711 (840)
Q Consensus       685 ~~~~~--------------------------------~~~---------------------~~~~~~~~gt~~y~aPE~~  711 (840)
                      .....                                ...                     ......++||-.|.|||++
T Consensus       228 ~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI  307 (459)
T KOG0610|consen  228 RCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVI  307 (459)
T ss_pred             cCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceee
Confidence            43110                                000                     0112346799999999999


Q ss_pred             ccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccC-CCcHHHHHHHHHHHHHcc
Q 003199          712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS-GSFRDEMIQVLRIAIRCT  790 (840)
Q Consensus       712 ~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl  790 (840)
                      .+...+.++|+|+|||++|||+.|..||.+....               ++..+++-+.+. +.....+..+.+||.+.+
T Consensus       308 ~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~---------------~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LL  372 (459)
T KOG0610|consen  308 RGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNK---------------ETLRNIVGQPLKFPEEPEVSSAAKDLIRKLL  372 (459)
T ss_pred             ecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCch---------------hhHHHHhcCCCcCCCCCcchhHHHHHHHHHh
Confidence            9999999999999999999999999999874321               223333333221 222355677888999999


Q ss_pred             CCCCCCCCC----HHHHHHH
Q 003199          791 SKSPATRPT----MNEVVQL  806 (840)
Q Consensus       791 ~~dP~~Rps----~~evl~~  806 (840)
                      .+||.+|..    ++||.+|
T Consensus       373 vKdP~kRlg~~rGA~eIK~H  392 (459)
T KOG0610|consen  373 VKDPSKRLGSKRGAAEIKRH  392 (459)
T ss_pred             ccChhhhhccccchHHhhcC
Confidence            999999998    8898876

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=4.5e-37  Score=332.51  Aligned_cols=257  Identities=22%  Similarity=0.285  Sum_probs=198.4

Q ss_pred             hcCccCeeeccCCcEEEEEEe----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      +|+..+.||+|+||.||+|..    .+|+.||+|++.....      .......+.+..|+.+++.+ .|++|+++++++
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~------~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~   74 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAAL------VQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAF   74 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHH------hhhhhHHHHHHHHHHHHHhccCCCCcccEEEEE
Confidence            367788999999999999854    3688999999853221      11123345678899999999 499999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ......++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||
T Consensus        75 ~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nili~~~~~~kl~DfG  150 (332)
T cd05614          75 QTEAKLHLILDYVSGGEMFTHLYQRD-NFSEDEVRFYSGEIILALEHLHK---LGIVYRDIKLENILLDSEGHVVLTDFG  150 (332)
T ss_pred             ecCCEEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHeEECCCCCEEEeeCc
Confidence            99999999999999999999997654 68999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++.+...  .........||+.|+|||++.+. .++.++|||||||++|||++|+.||......... ........   
T Consensus       151 ~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~-~~~~~~~~---  224 (332)
T cd05614         151 LSKEFLSE--EKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQ-SEVSRRIL---  224 (332)
T ss_pred             CCcccccc--CCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCH-HHHHHHHh---
Confidence            99765331  12223345799999999998765 4788999999999999999999999753221111 00100000   


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQLL  807 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~L  807 (840)
                           ..+..+....   ...+.+++.+|++.||++||     ++++++++-
T Consensus       225 -----~~~~~~~~~~---~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~  268 (332)
T cd05614         225 -----KCDPPFPSFI---GPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHP  268 (332)
T ss_pred             -----cCCCCCCCCC---CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCC
Confidence                 0111122222   33456778899999999999     788888763

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.4e-36  Score=316.23  Aligned_cols=250  Identities=26%  Similarity=0.322  Sum_probs=195.0

Q ss_pred             eeeccCCcEEEEEEe---CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceE
Q 003199          533 KVGQGGSGTVYKIDL---NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      .||+|+||.||+|.+   .++..||+|++.....        .....+.+.+|+.+++.+.|+||+++++++.. +..++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~--------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~l   72 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNN--------DPALKDELLREANVMQQLDNPYIVRMIGICEA-ESWML   72 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCC--------cHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCcEE
Confidence            589999999999954   3578999998843321        13345778999999999999999999998854 56789


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|.+++.... .+++..+..++.|++.|++|+|+   ++++||||||+||+++.++.+||+|||+++.....
T Consensus        73 v~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~  148 (257)
T cd05116          73 VMELAELGPLNKFLQKNK-HVTEKNITELVHQVSMGMKYLEE---TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             EEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchhhEEEcCCCeEEECCCccccccCCC
Confidence            999999999999997654 68999999999999999999999   99999999999999999999999999999876432


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD  768 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  768 (840)
                      ...........++..|+|||.+....++.++||||||+++|||++ |+.||.....  .   .+..... ...      .
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~---~~~~~i~-~~~------~  216 (257)
T cd05116         149 ENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKG--N---EVTQMIE-SGE------R  216 (257)
T ss_pred             CCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH--H---HHHHHHH-CCC------C
Confidence            111111222334678999999988889999999999999999998 9999975311  1   1111110 000      0


Q ss_pred             cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          769 KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       769 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ...+.   ....++.+++.+||+.||++||++.+|++.|++.
T Consensus       217 ~~~~~---~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         217 MECPQ---RCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             CCCCC---CCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            01111   2334567888899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1e-36  Score=321.14  Aligned_cols=257  Identities=22%  Similarity=0.306  Sum_probs=199.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      .++|+..+.||+|+||.||+|...      ++..||||++....         .......+.+|+.+++.++|+||++++
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~---------~~~~~~~~~~e~~~l~~l~~~~iv~~~   75 (277)
T cd05062           5 REKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA---------SMRERIEFLNEASVMKEFNCHHVVRLL   75 (277)
T ss_pred             HHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccC---------CHHHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            467888999999999999998643      35679999874321         112345688999999999999999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC---------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL---------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL  669 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill  669 (840)
                      +++.+....++||||+++|+|.+++....         ..+++..+..++.|++.||+|||+   .+++||||||+||++
T Consensus        76 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~vH~dlkp~Nil~  152 (277)
T cd05062          76 GVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMV  152 (277)
T ss_pred             EEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCcchheEEE
Confidence            99999999999999999999999987532         235788999999999999999999   899999999999999


Q ss_pred             cCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcc
Q 003199          670 DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKN  748 (840)
Q Consensus       670 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~  748 (840)
                      ++++.++|+|||+++...... .........+++.|+|||++.+..++.++|||||||++|||++ |..||.....  . 
T Consensus       153 ~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~--~-  228 (277)
T cd05062         153 AEDFTVKIGDFGMTRDIYETD-YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN--E-  228 (277)
T ss_pred             cCCCCEEECCCCCccccCCcc-eeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH--H-
Confidence            999999999999987653211 1111122345778999999998889999999999999999999 7888864311  1 


Q ss_pred             hhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                        ......          ...............+.+++.+|++.||++|||+.|++++|++
T Consensus       229 --~~~~~~----------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         229 --QVLRFV----------MEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             --HHHHHH----------HcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence              111110          0111111111223457788889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-37  Score=324.55  Aligned_cols=255  Identities=26%  Similarity=0.331  Sum_probs=211.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC-CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS-GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .++++.++||-|.||.||.|.|+. .-.||||.++...           ...++|..|..+|+.++|||+|+++|.|..+
T Consensus       267 tdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt-----------MeveEFLkEAAvMKeikHpNLVqLLGVCT~E  335 (1157)
T KOG4278|consen  267 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----------MEVEEFLKEAAVMKEIKHPNLVQLLGVCTHE  335 (1157)
T ss_pred             hheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc-----------hhHHHHHHHHHHHHhhcCccHHHHhhhhccC
Confidence            346788999999999999998874 4679999985433           3367899999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ..+|||+|||..|+|.+++++.. ..++.-..+++|.||+.|++||..   +++|||||.++|+|+.++..+||+|||++
T Consensus       336 pPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEk---knFIHRDLAARNCLVgEnhiVKvADFGLs  412 (1157)
T KOG4278|consen  336 PPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHIVKVADFGLS  412 (1157)
T ss_pred             CCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhccccccceEEeeccchh
Confidence            99999999999999999998764 345666778999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +.+..+  ...........+.|.|||-+.-..++.|+|||+|||+|||+.| |-.||.+..     +           ..
T Consensus       413 RlMtgD--TYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGid-----l-----------Sq  474 (1157)
T KOG4278|consen  413 RLMTGD--TYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGID-----L-----------SQ  474 (1157)
T ss_pred             hhhcCC--ceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCcc-----H-----------HH
Confidence            998542  2222233345678999999988899999999999999999999 999997631     1           11


Q ss_pred             hhhhccccc-CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          763 IMEVLDKKL-SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       763 ~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      +..++.+.+ .+..+.+..++.+|+..||+++|..||+++|+-+.++.+..
T Consensus       475 VY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~  525 (1157)
T KOG4278|consen  475 VYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFS  525 (1157)
T ss_pred             HHHHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhc
Confidence            233444443 23445567788999999999999999999999999987543

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=8.3e-37  Score=329.29  Aligned_cols=251  Identities=21%  Similarity=0.304  Sum_probs=194.8

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||.||+|... +++.||||++......       .....+.+.+|..++..+ +||||+++++++.+....++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~-------~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~l   73 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVN-------DDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFF   73 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-------hhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEE
Confidence            46999999999999654 6899999998543211       122345678899999888 69999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~e~~~~g~L~~~~~~~~-~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~-  148 (329)
T cd05588          74 VIEFVSGGDLMFHMQRQR-KLPEEHARFYSAEISLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIR-  148 (329)
T ss_pred             EEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEECcCcccccccc-
Confidence            999999999999887654 68999999999999999999999   9999999999999999999999999999864321 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCC---cchhhhhhhhhccccchhhh
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN---KNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  766 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||+......   .....+.......       
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~-------  219 (329)
T cd05588         149 --PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILE-------  219 (329)
T ss_pred             --CCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHc-------
Confidence              1122334679999999999999999999999999999999999999996422111   1111111100000       


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCC------HHHHHHH
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT------MNEVVQL  806 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps------~~evl~~  806 (840)
                      ....++...   ...+.+++.+|++.||.+||+      +.+++++
T Consensus       220 ~~~~~p~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05588         220 KQIRIPRSL---SVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSH  262 (329)
T ss_pred             CCCCCCCCC---CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcC
Confidence            001112222   345667888999999999997      6788765

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=7.8e-37  Score=336.39  Aligned_cols=257  Identities=21%  Similarity=0.317  Sum_probs=195.4

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|...+.||+|+||+||+|.. .+++.||||++.....       ......+.+.+|+++++.++|+||+++++++.+.+
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~-------~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~   74 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDV-------LNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKD   74 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHh-------hhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCC
Confidence            467788999999999999954 5789999999854321       11233567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~aL~~LH~---~givHrDlKp~Nili~~~~~~kL~DFGl~~~  150 (381)
T cd05626          75 NLYFVMDYIPGGDMMSLLIRME-VFPEVLARFYIAELTLAIESVHK---MGFIHRDIKPDNILIDLDGHIKLTDFGLCTG  150 (381)
T ss_pred             EEEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCcHHHEEECCCCCEEEeeCcCCcc
Confidence            9999999999999999997754 68899999999999999999999   9999999999999999999999999999754


Q ss_pred             hhccCCC--------------------------------------------CcceecccccccccCccccccCCCCcccc
Q 003199          686 LQARGGK--------------------------------------------DSTTTVIAGTYGYLAPEYAYSSKATTKCD  721 (840)
Q Consensus       686 ~~~~~~~--------------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  721 (840)
                      +......                                            ........||+.|+|||++.+..++.++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~D  230 (381)
T cd05626         151 FRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCD  230 (381)
T ss_pred             cccccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccc
Confidence            3210000                                            00012357999999999999888999999


Q ss_pred             chhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHH--ccCCCCCCCCC
Q 003199          722 VYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR--CTSKSPATRPT  799 (840)
Q Consensus       722 v~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--cl~~dP~~Rps  799 (840)
                      ||||||++|||++|+.||.......  .  .... .....      ....+. ......++.+++.+  |+..+|..||+
T Consensus       231 iwSlG~il~elltG~~Pf~~~~~~~--~--~~~i-~~~~~------~~~~~~-~~~~s~~~~dli~~ll~~~~~~~~R~~  298 (381)
T cd05626         231 WWSVGVILFEMLVGQPPFLAPTPTE--T--QLKV-INWEN------TLHIPP-QVKLSPEAVDLITKLCCSAEERLGRNG  298 (381)
T ss_pred             eeehhhHHHHHHhCCCCCcCCCHHH--H--HHHH-Hcccc------ccCCCC-CCCCCHHHHHHHHHHccCcccccCCCC
Confidence            9999999999999999997532110  0  0000 00000      000111 01122344455555  56677777999


Q ss_pred             HHHHHHH
Q 003199          800 MNEVVQL  806 (840)
Q Consensus       800 ~~evl~~  806 (840)
                      +.|++++
T Consensus       299 ~~~~l~h  305 (381)
T cd05626         299 ADDIKAH  305 (381)
T ss_pred             HHHHhcC
Confidence            9999987

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=1.2e-36  Score=317.59  Aligned_cols=255  Identities=28%  Similarity=0.384  Sum_probs=205.0

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ..+|+..+.||.|+||.||+|...++..||+|.+....          ......+.+|+.+++.++|+||+++++++...
T Consensus         5 ~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~----------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   74 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDD----------LLKQQDFQKEVQALKRLRHKHLISLFAVCSVG   74 (261)
T ss_pred             HHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccc----------hhhHHHHHHHHHHHhcCCCcchhheeeeEecC
Confidence            35677888999999999999988889999999984432          22245688899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+++|+|.+++... ...+++..+..++.|++.|++|||+   ++++||||||+||++++++.+||+|||.+
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~h~dl~~~nilv~~~~~~kl~d~g~~  151 (261)
T cd05148          75 EPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLA  151 (261)
T ss_pred             CCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccCcceEEEcCCceEEEccccch
Confidence            9999999999999999999764 3468999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ......   ........++..|+|||.+.+..++.++||||||+++|+|++ |+.||....  ........   .     
T Consensus       152 ~~~~~~---~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~--~~~~~~~~---~-----  218 (261)
T cd05148         152 RLIKED---VYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN--NHEVYDQI---T-----  218 (261)
T ss_pred             hhcCCc---cccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC--HHHHHHHH---H-----
Confidence            776331   111223346678999999988889999999999999999998 899996532  11111110   0     


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                           .....+........+.+++.+|++.||++|||++++++.|+.+
T Consensus       219 -----~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         219 -----AGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             -----hCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence                 0000111122335677888999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=1.6e-36  Score=314.91  Aligned_cols=248  Identities=25%  Similarity=0.323  Sum_probs=195.0

Q ss_pred             CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEE
Q 003199          532 NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV  610 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV  610 (840)
                      +.||+|+||.||+|.. .+++.||+|.+....         .......+.+|++++++++||||+++++++......++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~---------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   71 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETL---------PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV   71 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccC---------CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEE
Confidence            3699999999999965 478999999874221         123346788999999999999999999999999999999


Q ss_pred             EeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccC
Q 003199          611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG  690 (840)
Q Consensus       611 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~  690 (840)
                      |||+++++|.+++......+++.++..++.|++.||+|||+   .+++||||||+||+++.++.+|++|||++...... 
T Consensus        72 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~-  147 (252)
T cd05084          72 MELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLES---KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDG-  147 (252)
T ss_pred             EeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheEEEcCCCcEEECccccCcccccc-
Confidence            99999999999997655568999999999999999999999   99999999999999999999999999998754321 


Q ss_pred             CCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       691 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                      ..........++..|+|||.+.+..++.++||||||+++|||++ |..||.....  ...              ......
T Consensus       148 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~--~~~--------------~~~~~~  211 (252)
T cd05084         148 VYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN--QQT--------------REAIEQ  211 (252)
T ss_pred             cccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH--HHH--------------HHHHHc
Confidence            01111112223467999999988889999999999999999998 8888864211  000              000000


Q ss_pred             ccC-CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          770 KLS-GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       770 ~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ... .........+.+++.+|++.+|++||++.++.+.|+
T Consensus       212 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         212 GVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             CCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence            000 111122456778888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=7.5e-37  Score=324.51  Aligned_cols=262  Identities=24%  Similarity=0.316  Sum_probs=190.9

Q ss_pred             hcCccCeeeccCCcEEEEEEe-C-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc---CCCCcceeeeEE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-N-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI---RHKNIVKLYCYF  601 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~  601 (840)
                      +|+..+.||+|+||+||+|.. . +|+.||||++.......        .....+.+|+.+++.+   .||||+++++++
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~--------~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~   73 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE--------GMPLSTIREVAVLRHLETFEHPNVVRLFDVC   73 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC--------CchHHHHHHHHHHHhhcccCCCCcceEEEEE
Confidence            577888999999999999965 3 46889999885433211        1123345566666555   699999999988


Q ss_pred             e-----cCccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          602 S-----SLYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       602 ~-----~~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      .     .....++||||++ ++|.+++... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+
T Consensus        74 ~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~iiH~dlkp~Nil~~~~~~~  149 (290)
T cd07862          74 TVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQI  149 (290)
T ss_pred             ecccCCCCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEcCCCCE
Confidence            5     3455789999996 6899988754 2458999999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|||+++....    ........||+.|+|||.+.+..++.++|||||||++|||++|++||.+....  ........
T Consensus       150 kl~Dfg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~--~~~~~i~~  223 (290)
T cd07862         150 KLADFGLARIYSF----QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV--DQLGKILD  223 (290)
T ss_pred             EEccccceEeccC----CcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHH--HHHHHHHH
Confidence            9999999976532    12334556899999999998889999999999999999999999999763211  11100000


Q ss_pred             hh--ccccchh-------hhcccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          756 KV--DTKEGIM-------EVLDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       756 ~~--~~~~~~~-------~~~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..  .......       ...........    .+....+.+++.+|++.||++|||+.|++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~h  287 (290)
T cd07862         224 VIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  287 (290)
T ss_pred             HhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhcC
Confidence            00  0000000       00000000001    1123456788999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.7e-36  Score=315.26  Aligned_cols=250  Identities=22%  Similarity=0.301  Sum_probs=194.3

Q ss_pred             eeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceE
Q 003199          533 KVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      .||+|+||.||+|.+.   ++..||+|++....         .....+.+.+|+.++++++|+||+++++++.. ...++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~l   71 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNEN---------EKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALML   71 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEccccc---------ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEE
Confidence            3899999999999654   35579999884332         12334678899999999999999999998864 46789


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++++|.+++......+++..+..++.|++.|++|||+   ++++||||||+||+++.++.+||+|||+++.....
T Consensus        72 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  148 (257)
T cd05115          72 VMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEG---KNFVHRDLAARNVLLVNQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             EEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---cCeeecccchheEEEcCCCcEEeccCCccccccCC
Confidence            999999999999997655578999999999999999999999   89999999999999999999999999999765332


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD  768 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  768 (840)
                      ...........++..|+|||.+.+..++.++||||||+++||+++ |+.||.+...  .......   ..          
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~---~~----------  213 (257)
T cd05115         149 DSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKG--PEVMSFI---EQ----------  213 (257)
T ss_pred             ccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHHH---HC----------
Confidence            111111222334578999999988889999999999999999996 9999975321  1110000   00          


Q ss_pred             cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          769 KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       769 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ............++.+++.+||..+|++||++.+|.+.|+..
T Consensus       214 ~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         214 GKRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            000111112345677788899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=7.7e-37  Score=329.33  Aligned_cols=251  Identities=22%  Similarity=0.302  Sum_probs=193.6

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||.||+|... +++.||+|++......       .....+.+..|+.++.++ +||||+++++++......++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l   73 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVN-------DDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   73 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhc-------chhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEE
Confidence            46999999999999654 6889999998543211       122345677888888777 79999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|..++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~E~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~-  148 (329)
T cd05618          74 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR-  148 (329)
T ss_pred             EEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCCEEEeeCCccccccC-
Confidence            999999999999887654 68999999999999999999999   9999999999999999999999999999875322 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCc---chhhhhhhhhccccchhhh
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK---NIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  766 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||........   ....+.......       
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~-------  219 (329)
T cd05618         149 --PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE-------  219 (329)
T ss_pred             --CCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhc-------
Confidence              11223346799999999999999999999999999999999999999964221111   111111100000       


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCC------HHHHHHH
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT------MNEVVQL  806 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps------~~evl~~  806 (840)
                      ....++..   ....+.+++.+|++.||++||+      +.+++++
T Consensus       220 ~~~~~p~~---~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05618         220 KQIRIPRS---LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  262 (329)
T ss_pred             CCCCCCCC---CCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcC
Confidence            00112222   2345667888999999999998      5677666

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=1.8e-36  Score=327.00  Aligned_cols=199  Identities=27%  Similarity=0.442  Sum_probs=173.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|... +|..||+|.+....         .......+.+|+++++.++|+||+++++++.+.
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   75 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI---------KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD   75 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc---------CHHHHHHHHHHHHHHHHCCCCcccceeEEEEEC
Confidence            56888899999999999999655 68899999874321         123356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++|+|.+++.... .+++..+..++.+++.|++|||+.  .+++||||||+||++++++.+||+|||++.
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~  152 (333)
T cd06650          76 GEISICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (333)
T ss_pred             CEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcch
Confidence            99999999999999999997754 588999999999999999999972  479999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCC
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED  741 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  741 (840)
                      .....     ......|+..|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus       153 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         153 QLIDS-----MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             hhhhh-----ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            65321     12335689999999999988899999999999999999999999974

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=5.4e-37  Score=329.35  Aligned_cols=245  Identities=27%  Similarity=0.329  Sum_probs=192.3

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||.||+|..+ +++.||||++.....       ......+.+..|..++... .||||+++++++...+..++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~i   73 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVI-------LQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFF   73 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHH-------hhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEE
Confidence            36999999999999654 689999999853221       0112345567788888776 69999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~Ey~~~g~L~~~i~~~~-~l~~~~~~~~~~ql~~~L~~lH~---~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~-  148 (320)
T cd05590          74 VMEFVNGGDLMFHIQKSR-RFDEARARFYAAEITSALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIF-  148 (320)
T ss_pred             EEcCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCc-
Confidence            999999999999987764 68999999999999999999999   9999999999999999999999999999875322 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....     ...........        .
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~-----~~~~~~i~~~~--------~  213 (320)
T cd05590         149 --NGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE-----DDLFEAILNDE--------V  213 (320)
T ss_pred             --CCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH-----HHHHHHHhcCC--------C
Confidence              12223445799999999999988999999999999999999999999975311     01111000000        0


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTM------NEVVQL  806 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~------~evl~~  806 (840)
                      ..+..   ....+.+++.+|++.||++||++      ++++++
T Consensus       214 ~~~~~---~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h  253 (320)
T cd05590         214 VYPTW---LSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRH  253 (320)
T ss_pred             CCCCC---CCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcC
Confidence            11111   23456678889999999999998      666665

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=3.9e-37  Score=331.59  Aligned_cols=246  Identities=24%  Similarity=0.296  Sum_probs=194.4

Q ss_pred             CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEE
Q 003199          532 NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV  610 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV  610 (840)
                      +.||+|+||.||+|.. .+|+.||+|++......       .......+..|++++..++||||+++++++......++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~-------~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv   73 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIV-------AKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV   73 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-------hhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEE
Confidence            4699999999999954 57899999998543211       122345677899999999999999999999999999999


Q ss_pred             EeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccC
Q 003199          611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG  690 (840)
Q Consensus       611 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~  690 (840)
                      |||+++|+|..++.... .+++..+..++.|++.||+|||+.  .+|+||||||+||+++.++.+||+|||+++....  
T Consensus        74 ~E~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~lH~~--~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~--  148 (325)
T cd05594          74 MEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK--  148 (325)
T ss_pred             EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCCCCeEEECCCCCEEEecCCCCeecCC--
Confidence            99999999999887654 689999999999999999999962  6899999999999999999999999999875322  


Q ss_pred             CCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       691 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                       .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  .   ........        ....
T Consensus       149 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~--~---~~~~~i~~--------~~~~  214 (325)
T cd05594         149 -DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--E---KLFELILM--------EEIR  214 (325)
T ss_pred             -CCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCH--H---HHHHHHhc--------CCCC
Confidence             11222345699999999999988999999999999999999999999965311  0   00000000        0111


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      ++...   ..++.+++.+|++.||++|+     ++.+++++
T Consensus       215 ~p~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         215 FPRTL---SPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             CCCCC---CHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence            12222   34566778899999999996     89999876

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=2.1e-36  Score=317.19  Aligned_cols=258  Identities=27%  Similarity=0.382  Sum_probs=202.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc---EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~---~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+|+..+.||+|+||.||+|... +++   .||+|.+....         .....+.+..|++++++++|+|++++++++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~---------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   75 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGY---------TEKQRQDFLSEASIMGQFSHHNIIRLEGVV   75 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccC---------CHHHHHHHHHHHHHHhcCCCCCeeEEEEEE
Confidence            46777889999999999999664 333   79999874321         122346688999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ...+..++||||+++++|.+++......+++.++..++.|++.|++|||+   .+++||||||+||++++++.+|++|||
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg  152 (268)
T cd05063          76 TKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSDFG  152 (268)
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEEcCCCcEEECCCc
Confidence            99999999999999999999998765578999999999999999999999   899999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ++..................+..|+|||++....++.++|||||||++|||++ |+.||.....  .   .+.....   
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~--~---~~~~~i~---  224 (268)
T cd05063         153 LSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN--H---EVMKAIN---  224 (268)
T ss_pred             cceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH--H---HHHHHHh---
Confidence            98766432111111112223467999999988889999999999999999998 9999864311  1   1111110   


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                             .....+...+....+.+++.+||+.+|++||++.+|++.|+++
T Consensus       225 -------~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         225 -------DGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             -------cCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                   0001111122345678899999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.4e-37  Score=322.37  Aligned_cols=253  Identities=24%  Similarity=0.277  Sum_probs=198.7

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|+||+||++.. .+++.||||++......       .......+.+|+.++++++|+||+++++++...+.
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   74 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIK-------KRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDA   74 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhh-------hhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCe
Confidence            66778999999999999865 47899999998432211       12234567789999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          607 NLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      .++||||+++|+|.+++... ...+++..+..++.|++.|++|||+   .+++||||||+||++++++.++|+|||++..
T Consensus        75 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~  151 (285)
T cd05605          75 LCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHR---ERIVYRDLKPENILLDDYGHIRISDLGLAVE  151 (285)
T ss_pred             EEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHEEECCCCCEEEeeCCCcee
Confidence            99999999999999888654 3468999999999999999999999   8999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...    ........|++.|+|||++.+..++.++||||+||++|||++|+.||.+.....  .  +...        ..
T Consensus       152 ~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~--~--~~~~--------~~  215 (285)
T cd05605         152 IPE----GETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV--K--REEV--------ER  215 (285)
T ss_pred             cCC----CCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh--H--HHHH--------HH
Confidence            532    112234568999999999988889999999999999999999999997532110  0  0000        00


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      .+..............+.+++.+|++.||++||     ++.+++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         216 RVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             HhhhcccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence            011100111112344567788899999999999     88888776

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=1.8e-36  Score=320.23  Aligned_cols=256  Identities=23%  Similarity=0.369  Sum_probs=199.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ..|+..+.||+|+||.||+|..     .++..||+|.+....         .......+.+|++++++++||||++++++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~---------~~~~~~~~~~E~~~l~~l~h~niv~~~~~   75 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDIN---------NPQQWGEFQQEASLMAELHHPNIVCLLGV   75 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCC---------CHHHHHHHHHHHHHHhhCCCCCeeeEEEE
Confidence            4567778999999999999964     246789999885322         12334678899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCC----------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCC
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGL----------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKS  664 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~----------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~  664 (840)
                      +......++||||+++++|.+++....                ..+++.++..++.|++.||+|||+   ++++||||||
T Consensus        76 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp  152 (283)
T cd05090          76 VTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSS---HFFVHKDLAA  152 (283)
T ss_pred             EecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---cCeehhcccc
Confidence            999999999999999999999985321                247889999999999999999999   9999999999


Q ss_pred             CCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCC
Q 003199          665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF  743 (840)
Q Consensus       665 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~  743 (840)
                      +||++++++.+||+|||+++...... .........++..|+|||++.+..++.++||||||+++|||++ |..||....
T Consensus       153 ~nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~  231 (283)
T cd05090         153 RNILIGEQLHVKISDLGLSREIYSAD-YYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS  231 (283)
T ss_pred             ceEEEcCCCcEEeccccccccccCCc-ceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999998764321 1122233445778999999988889999999999999999998 999986421


Q ss_pred             CCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      .  .......    .         .....+.......++.+++.+|++.||++||++.++.++|..
T Consensus       232 ~--~~~~~~~----~---------~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         232 N--QEVIEMV----R---------KRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             H--HHHHHHH----H---------cCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            0  0110000    0         000111111223456778889999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.4e-36  Score=320.67  Aligned_cols=256  Identities=28%  Similarity=0.411  Sum_probs=201.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      +.|...+.||+|+||.||+|...      ++..||||.+.....         ....+.+.+|+++++.++|+||+++++
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~e~~~l~~l~~~~i~~~~~   75 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS---------NDARKDFEREAELLTNFQHENIVKFYG   75 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC---------HHHHHHHHHHHHHHHhcCCCCchheee
Confidence            45677789999999999999653      347899998843321         223568899999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC-------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL-------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTN  666 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~-------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~N  666 (840)
                      ++......++||||+++++|.+++....             ..+++.++..++.|++.|++|||+   .+++||||||+|
T Consensus        76 ~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~h~dlkp~n  152 (280)
T cd05049          76 VCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS---QHFVHRDLATRN  152 (280)
T ss_pred             EEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeeccccccce
Confidence            9999999999999999999999997542             347889999999999999999999   899999999999


Q ss_pred             EEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCC
Q 003199          667 ILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGD  745 (840)
Q Consensus       667 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~  745 (840)
                      |+++.++.++|+|||+++...... .........+++.|+|||++.+..++.++||||||+++|||++ |..||.+... 
T Consensus       153 ili~~~~~~kl~d~g~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~-  230 (280)
T cd05049         153 CLVGYDLVVKIGDFGMSRDVYTTD-YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSN-  230 (280)
T ss_pred             EEEcCCCeEEECCcccceecccCc-ceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCH-
Confidence            999999999999999987543211 1111223346788999999999999999999999999999998 9999865311 


Q ss_pred             CcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          746 NKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                       .......             ...............+.+++.+||+.||++||++.|+++.|++
T Consensus       231 -~~~~~~~-------------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         231 -EEVIECI-------------TQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             -HHHHHHH-------------HcCCcCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence             1111110             0111111111234567788889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=8.8e-37  Score=333.85  Aligned_cols=205  Identities=25%  Similarity=0.380  Sum_probs=174.7

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||+||+|.. .+++.||||++....       .........+.+|+.++.+++|+||+++++++.+..
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~   74 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKAD-------MLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKL   74 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHH-------HHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            577889999999999999955 468999999984322       111233467888999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.+.. .+++..+..++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+++.
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~lH~---~givHrDlKp~NILi~~~~~vkL~DFGla~~  150 (363)
T cd05628          75 NLYLIMEFLPGGDMMTLLMKKD-TLTEEETQFYIAETVLAIDSIHQ---LGFIHRDIKPDNLLLDSKGHVKLSDFGLCTG  150 (363)
T ss_pred             eEEEEEcCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCCEEEeeccCccc
Confidence            9999999999999999998754 68999999999999999999999   9999999999999999999999999999876


Q ss_pred             hhccCCC--------------------------------CcceecccccccccCccccccCCCCccccchhHHHHHHHHH
Q 003199          686 LQARGGK--------------------------------DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELI  733 (840)
Q Consensus       686 ~~~~~~~--------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~  733 (840)
                      +......                                ........||+.|+|||++.+..++.++|||||||++|||+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell  230 (363)
T cd05628         151 LKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEML  230 (363)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHH
Confidence            4321100                                00112357999999999999989999999999999999999


Q ss_pred             hCCCCCCCC
Q 003199          734 TGRKPVEDD  742 (840)
Q Consensus       734 tg~~p~~~~  742 (840)
                      +|+.||.+.
T Consensus       231 ~G~~Pf~~~  239 (363)
T cd05628         231 IGYPPFCSE  239 (363)
T ss_pred             hCCCCCCCC
Confidence            999999753

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.2e-38  Score=324.48  Aligned_cols=249  Identities=30%  Similarity=0.408  Sum_probs=202.3

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||.|+||.||-| +..+.+.||||++.-...       ...+...++..|+..+++++|||++.+-|||-.+
T Consensus        26 klf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGK-------Qs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre   98 (948)
T KOG0577|consen   26 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-------QSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLRE   98 (948)
T ss_pred             HHHHHHHHhcCCccceeEEeeccCccceeeeeecccccc-------ccHHHHHHHHHHHHHHHhccCCCcccccceeecc
Confidence            44667788999999999999 556789999998844332       2345568899999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...|+||||| -||-.+.+.-....+.+-++..|+.+.+.||+|||+   .+.||||||+.|||+++.|.||++|||.|.
T Consensus        99 ~TaWLVMEYC-lGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS---~~~IHRDiKAGNILLse~g~VKLaDFGSAs  174 (948)
T KOG0577|consen   99 HTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHS---HNRIHRDIKAGNILLSEPGLVKLADFGSAS  174 (948)
T ss_pred             chHHHHHHHH-hccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH---hhHHhhhccccceEecCCCeeeeccccchh
Confidence            9999999999 678888888777788999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ...+       ...++|||.|||||++.   .++|+-|+||||+|+...|+...++|+....   +....+.   +.   
T Consensus       175 i~~P-------AnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMN---AMSALYH---IA---  238 (948)
T KOG0577|consen  175 IMAP-------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN---AMSALYH---IA---  238 (948)
T ss_pred             hcCc-------hhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCch---HHHHHHH---HH---
Confidence            7643       45689999999999874   5789999999999999999999999985431   1111110   00   


Q ss_pred             chhhhccccc-CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          762 GIMEVLDKKL-SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       762 ~~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                         .--.+.+ .+.+.+....+++   .|+++-|.+|||..+++++-
T Consensus       239 ---QNesPtLqs~eWS~~F~~Fvd---~CLqKipqeRptse~ll~H~  279 (948)
T KOG0577|consen  239 ---QNESPTLQSNEWSDYFRNFVD---SCLQKIPQERPTSEELLKHR  279 (948)
T ss_pred             ---hcCCCCCCCchhHHHHHHHHH---HHHhhCcccCCcHHHHhhcc
Confidence               0001111 3345555555555   89999999999999998763

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=2.1e-36  Score=320.99  Aligned_cols=258  Identities=27%  Similarity=0.397  Sum_probs=202.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      .+|...+.||+|+||.||+|...      ++..|++|.+....          ....+.+.+|++++++++|+||+++++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~----------~~~~~~~~~e~~~l~~l~h~~i~~~~~   74 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT----------LAARKDFQREAELLTNLQHEHIVKFYG   74 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCcc----------HHHHHHHHHHHHHHhcCCCCCcceEEE
Confidence            45677789999999999998642      34568899874322          233467889999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKS  664 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~  664 (840)
                      ++......++||||+++++|.+++....               ..++|..+..++.|++.|++|||+   ++++||||||
T Consensus        75 ~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp  151 (291)
T cd05094          75 VCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLAS---QHFVHRDLAT  151 (291)
T ss_pred             EEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCc
Confidence            9999999999999999999999997532               247899999999999999999999   9999999999


Q ss_pred             CCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCC
Q 003199          665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF  743 (840)
Q Consensus       665 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~  743 (840)
                      +||+++.++.++|+|||++....... .........++..|+|||++.+..++.++||||||+++|||++ |+.||....
T Consensus       152 ~Nil~~~~~~~~l~dfg~a~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  230 (291)
T cd05094         152 RNCLVGANLLVKIGDFGMSRDVYSTD-YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS  230 (291)
T ss_pred             ceEEEccCCcEEECCCCcccccCCCc-eeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999997653311 1112233456788999999998899999999999999999999 999986532


Q ss_pred             CCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      .  ......             ................+.+++.+||+.+|++||++.++++.|+++..
T Consensus       231 ~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         231 N--TEVIEC-------------ITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             H--HHHHHH-------------HhCCCCCCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence            1  111100             00111111111234567788899999999999999999999998743

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=8.3e-37  Score=328.89  Aligned_cols=248  Identities=26%  Similarity=0.348  Sum_probs=192.6

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHH---HhccCCCCcceeeeEEec
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET---LGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~---l~~l~h~niv~l~~~~~~  603 (840)
                      |+..+.||+|+||.||+|.. .+|+.||||++......       .....+.+.+|+.+   ++.++||||+++++++..
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~   73 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDII-------ARDEVESLMCEKRIFETANSERHPFLVNLFACFQT   73 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhh-------hhhHHHHHHHHHHHHHhccccCCCChhceeeEEEc
Confidence            45678999999999999965 47899999998543211       11223455566555   456789999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|..++...  .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        74 ~~~~~lv~E~~~~~~L~~~~~~~--~l~~~~~~~~~~qi~~al~~lH~---~~ivHrdlkp~Nill~~~~~~kL~Dfg~~  148 (324)
T cd05589          74 EDHVCFVMEYAAGGDLMMHIHTD--VFSEPRAVFYAACVVLGLQYLHE---NKIVYRDLKLDNLLLDTEGFVKIADFGLC  148 (324)
T ss_pred             CCEEEEEEcCCCCCcHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCcEEeCcccCC
Confidence            99999999999999999888764  68999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +....   .........|++.|+|||.+.+..++.++|||||||++|||++|+.||.....  .   .........    
T Consensus       149 ~~~~~---~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~--~---~~~~~i~~~----  216 (324)
T cd05589         149 KEGMG---FGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE--E---EVFDSIVND----  216 (324)
T ss_pred             ccCCC---CCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH--H---HHHHHHHhC----
Confidence            65322   12223456799999999999998999999999999999999999999975311  0   010000000    


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                          ....+..   ....+.+++.+|++.||.+||     ++.+++++
T Consensus       217 ----~~~~p~~---~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~  257 (324)
T cd05589         217 ----EVRYPRF---LSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQ  257 (324)
T ss_pred             ----CCCCCCC---CCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhC
Confidence                0011112   234566788899999999999     57777775

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=3.7e-37  Score=332.81  Aligned_cols=255  Identities=24%  Similarity=0.277  Sum_probs=199.7

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|+||+||+|.. .+|+.||+|++.....       ......+.+.+|+.+++.+.|+||+++++++.+..
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~   74 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVL-------LAQETVSFFEEERDILSISNSPWIPQLQYAFQDKD   74 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHh-------hhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCC
Confidence            577888999999999999955 4789999999854321       11234567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++..
T Consensus        75 ~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~  151 (330)
T cd05601          75 NLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQ---MGYVHRDIKPENVLIDRTGHIKLADFGSAAR  151 (330)
T ss_pred             eEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEcccCchHheEECCCCCEEeccCCCCeE
Confidence            9999999999999999998765579999999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccc------cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAY------SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ....  .........||+.|+|||++.      ...++.++|||||||++|||++|+.||.....     ..........
T Consensus       152 ~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~-----~~~~~~i~~~  224 (330)
T cd05601         152 LTAN--KMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTS-----AKTYNNIMNF  224 (330)
T ss_pred             CCCC--CceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCH-----HHHHHHHHcC
Confidence            5431  112233457899999999886      45678999999999999999999999975321     0111100000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..    ..  ..+ ........+.+++..|++ +|++||++.+++++
T Consensus       225 ~~----~~--~~~-~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h  263 (330)
T cd05601         225 QR----FL--KFP-EDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCH  263 (330)
T ss_pred             CC----cc--CCC-CCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCC
Confidence            00    00  001 111123456677778997 99999999999976

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=2.4e-36  Score=316.40  Aligned_cols=258  Identities=26%  Similarity=0.353  Sum_probs=202.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-C---CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-S---GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+|+..+.||+|+||.||+|... +   +..||+|.+.....         ....+.+.+|+.++++++||||+++++++
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   74 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYT---------EKQRRDFLSEASIMGQFDHPNIIHLEGVV   74 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCC---------HHHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            46778899999999999999653 2   33799998743211         12346788999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ...+..++||||+++++|.+++......+++.++..++.|++.|++|||+   .+++||||||+||+++.++.++++|||
T Consensus        75 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~h~dlkp~nili~~~~~~~l~dfg  151 (267)
T cd05066          75 TKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILVNSNLVCKVSDFG  151 (267)
T ss_pred             ecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeehhhchhcEEECCCCeEEeCCCC
Confidence            99999999999999999999998765578999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ++..+..............++..|+|||++.+..++.++||||||+++||+++ |..||.....  .......   .   
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~--~~~~~~~---~---  223 (267)
T cd05066         152 LSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN--QDVIKAI---E---  223 (267)
T ss_pred             cccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH--HHHHHHH---h---
Confidence            99876432111111122234568999999998889999999999999999887 9999865311  1111111   0   


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                             +....+.....+..+.+++.+|++.+|.+||++.++++.|.++
T Consensus       224 -------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         224 -------EGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             -------CCCcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence                   0000011112344667888899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.2e-36  Score=326.19  Aligned_cols=245  Identities=25%  Similarity=0.376  Sum_probs=188.9

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||.||+|... +++.||||++......       .....+.+..|..++... .||||+++++++......++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~l   73 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVL-------EDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFF   73 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-------hhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEE
Confidence            36999999999999664 6889999998543211       112233445566666654 89999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|..++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.....
T Consensus        74 v~e~~~gg~L~~~~~~~~-~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~  149 (316)
T cd05592          74 VMEYLNGGDLMFHIQSSG-RFDEARARFYAAEIICGLQFLHK---KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNG  149 (316)
T ss_pred             EEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCC
Confidence            999999999999987654 68999999999999999999999   99999999999999999999999999999754321


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                         ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+...  ...  .... ..        ...
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~--~~~--~~~i-~~--------~~~  213 (316)
T cd05592         150 ---EGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE--DEL--FDSI-LN--------DRP  213 (316)
T ss_pred             ---CCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH--HHH--HHHH-Hc--------CCC
Confidence               1233456799999999999988999999999999999999999999975311  000  0000 00        001


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH-HHHHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN-EVVQL  806 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~-evl~~  806 (840)
                      .++...   ..++.+++.+|++.||++||++. +++++
T Consensus       214 ~~~~~~---~~~~~~ll~~~l~~~P~~R~~~~~~l~~h  248 (316)
T cd05592         214 HFPRWI---SKEAKDCLSKLFERDPTKRLGVDGDIRQH  248 (316)
T ss_pred             CCCCCC---CHHHHHHHHHHccCCHHHcCCChHHHHcC
Confidence            112222   23456777899999999999875 55543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=3e-36  Score=314.34  Aligned_cols=252  Identities=31%  Similarity=0.448  Sum_probs=199.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|...++..||+|.+.....           ..+.+.+|+.++++++|+|++++++++.+ .
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-----------~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~   73 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-----------SPESFLEEAQIMKKLRHDKLVQLYAVVSE-E   73 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-----------CHHHHHHHHHHHHhcCCCceEEEEeEECC-C
Confidence            46778889999999999999888888999999854321           12458899999999999999999998854 5


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++... ...+++.++..++.+++.|++|||+   .+++||||||+||++++++.++|+|||.+.
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~Nili~~~~~~~l~dfg~~~  150 (260)
T cd05070          74 PIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLAR  150 (260)
T ss_pred             CcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEEeCCceEEeCCceeee
Confidence            678999999999999999764 2458999999999999999999999   899999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .+....  ........++..|+|||+..+..++.++||||||+++|||++ |..||.+...  .......          
T Consensus       151 ~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~--~~~~~~~----------  216 (260)
T cd05070         151 LIEDNE--YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNN--REVLEQV----------  216 (260)
T ss_pred             eccCcc--cccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHH----------
Confidence            653311  111122335668999999988889999999999999999999 8999865311  1111110          


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                         ......+...+....+.+++.+|+.++|++|||+.++.+.|++
T Consensus       217 ---~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         217 ---ERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             ---HcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence               0000011112234567888999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=3.5e-36  Score=314.08  Aligned_cols=253  Identities=29%  Similarity=0.399  Sum_probs=200.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..++||+|+||.||+|...++..||+|++.....           ..+.+.+|++++++++|+||+++++++.+ .
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-----------~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~   73 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----------SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E   73 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-----------CHHHHHHHHHHHHhCCCCCcceEEEEECC-C
Confidence            46888899999999999999877777899999853221           12468889999999999999999998754 5


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++|+|.+++... ...+++..+..++.|++.||+|+|+   .+++||||||+||++++++.++|+|||.++
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~Nill~~~~~~~L~dfg~~~  150 (262)
T cd05071          74 PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  150 (262)
T ss_pred             CcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcccEEEcCCCcEEeccCCcee
Confidence            578999999999999999764 2357999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ......  ........++..|+|||+..+..++.++||||||+++|||++ |+.||......  .  .+..         
T Consensus       151 ~~~~~~--~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~--~--~~~~---------  215 (262)
T cd05071         151 LIEDNE--YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--E--VLDQ---------  215 (262)
T ss_pred             eccccc--cccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChH--H--HHHH---------
Confidence            654321  111223346678999999988899999999999999999999 88888653110  0  0000         


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                        ...........+....+.+++.+|++.||++||+++++++.|++.
T Consensus       216 --~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         216 --VERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             --HhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence              000000111123445678899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=2.6e-36  Score=318.01  Aligned_cols=257  Identities=23%  Similarity=0.330  Sum_probs=198.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc----EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE----VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|...+.||+|+||+||+|.+. +|+    .|++|.+....         .......+..|+.+++++.||||++++++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~---------~~~~~~~~~~~~~~l~~l~h~~iv~~~~~   77 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRS---------GRQTFQEITDHMLAMGSLDHAYIVRLLGI   77 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeeccccc---------chHHHHHHHHHHHHHhcCCCCCcceEEEE
Confidence            45677889999999999999764 455    36666652211         12334567888999999999999999998


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +.. ...++|+||+++|+|.+++......++|..+..++.|++.||+|||+   ++++||||||+||++++++.+||+||
T Consensus        78 ~~~-~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~kl~Df  153 (279)
T cd05111          78 CPG-ASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEE---HRMVHRNLAARNILLKSDSIVQIADF  153 (279)
T ss_pred             ECC-CccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEEcCC
Confidence            864 45678999999999999998765678999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+++..... ..........++..|+|||++.+..++.++||||||+++||+++ |+.||.+....  ......    ..
T Consensus       154 g~~~~~~~~-~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~--~~~~~~----~~  226 (279)
T cd05111         154 GVADLLYPD-DKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPH--EVPDLL----EK  226 (279)
T ss_pred             ccceeccCC-CcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHH----HC
Confidence            999865432 11122234557788999999988899999999999999999998 99999753211  011110    00


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ..   ...   ...   .....+.+++.+||..||++|||+.|+.+.|..+.
T Consensus       227 ~~---~~~---~~~---~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~  269 (279)
T cd05111         227 GE---RLA---QPQ---ICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMA  269 (279)
T ss_pred             CC---cCC---CCC---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence            00   000   011   12245677888999999999999999999998754

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1e-36  Score=343.74  Aligned_cols=254  Identities=26%  Similarity=0.297  Sum_probs=198.8

Q ss_pred             HhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||+||+|. ..+|+.||||++......        ......+.+|+.++..+.|+|++++++.+...
T Consensus        32 ~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~--------~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~  103 (496)
T PTZ00283         32 KKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMS--------EADKNRAQAEVCCLLNCDFFSIVKCHEDFAKK  103 (496)
T ss_pred             CCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCC--------HHHHHHHHHHHHHHhcCCCCcEEEeecceecc
Confidence            578888999999999999995 457999999998543211        23345678899999999999999998776433


Q ss_pred             c--------cceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          605 Y--------CNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       605 ~--------~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      +        ..++||||+++|+|.+++...   ...+++..+..++.|++.||+|+|+   ++|+||||||+|||++.++
T Consensus       104 ~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~---~~IiHrDLKP~NILl~~~~  180 (496)
T PTZ00283        104 DPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS---KHMIHRDIKSANILLCSNG  180 (496)
T ss_pred             cccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEeCCC
Confidence            2        357999999999999988653   2468899999999999999999999   9999999999999999999


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      .+||+|||+++.+.... .........||+.|+|||++.+..++.++|||||||++|||++|+.||....     .....
T Consensus       181 ~vkL~DFGls~~~~~~~-~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~-----~~~~~  254 (496)
T PTZ00283        181 LVKLGDFGFSKMYAATV-SDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN-----MEEVM  254 (496)
T ss_pred             CEEEEecccCeeccccc-cccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHH
Confidence            99999999997654321 1122334679999999999999999999999999999999999999997531     11111


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..          .......+.......++.+++.+||+.||.+||++.+++++
T Consensus       255 ~~----------~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        255 HK----------TLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             HH----------HhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            11          11111111112233457778889999999999999999875

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.2e-36  Score=319.90  Aligned_cols=268  Identities=28%  Similarity=0.370  Sum_probs=198.6

Q ss_pred             hcCccCeeeccCCcEEEEEEe-----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .|...+.||+|+||.||+|..     .++..||+|.+....          ....+.+.+|++++++++||||+++++++
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~----------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   74 (284)
T cd05081           5 HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST----------AEHLRDFEREIEILKSLQHDNIVKYKGVC   74 (284)
T ss_pred             cceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC----------HHHHHHHHHHHHHHHhCCCCCeeEEEEEE
Confidence            566778999999999999864     357899999874322          23346788999999999999999999987


Q ss_pred             ec--CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          602 SS--LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       602 ~~--~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      ..  ....++||||+++|+|.+++......+++..+..++.|++.||+|||+   ++++||||||+||++++++.+||+|
T Consensus        75 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~---~~i~H~dlkp~nili~~~~~~~l~d  151 (284)
T cd05081          75 YSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGS---KRYVHRDLATRNILVESENRVKIGD  151 (284)
T ss_pred             ccCCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHhhEEECCCCeEEECC
Confidence            44  346789999999999999997765568999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ||+++................++..|+|||++.+..++.++||||||+++|||++|..|+......   ...........
T Consensus       152 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~---~~~~~~~~~~~  228 (284)
T cd05081         152 FGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAE---FMRMMGNDKQG  228 (284)
T ss_pred             CcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchh---hhhhccccccc
Confidence            999987643211111111223445699999998888999999999999999999988776432110   00000000000


Q ss_pred             c---cchhhhcccc-cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          760 K---EGIMEVLDKK-LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       760 ~---~~~~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .   ....+.+... ..+........+.+++.+||+.+|++|||+.|+++.|+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         229 QMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             ccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            0   0000111111 0111122345677888899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1e-36  Score=328.12  Aligned_cols=250  Identities=25%  Similarity=0.308  Sum_probs=194.9

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCC-CcceeeeEEecC
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK-NIVKLYCYFSSL  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~-niv~l~~~~~~~  604 (840)
                      +|+..+.||+|+||.||+|... +++.||||++......       .....+.+..|++++..+.|+ +|+++++++.+.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~-------~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~   73 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVII-------QDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM   73 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhh-------hhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcC
Confidence            3677889999999999999655 6789999998543211       122345677899999999764 588899999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+++
T Consensus        74 ~~~~lv~E~~~~g~L~~~~~~~~-~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~  149 (324)
T cd05587          74 DRLYFVMEYVNGGDLMYHIQQVG-KFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDAEGHIKIADFGMCK  149 (324)
T ss_pred             CEEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEEcCCCCEEEeecCcce
Confidence            99999999999999999987654 68999999999999999999999   999999999999999999999999999986


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....   .........||+.|+|||++.+..++.++||||+||++|||++|+.||.....  .....  . ....     
T Consensus       150 ~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~--~~~~~--~-i~~~-----  216 (324)
T cd05587         150 ENIF---GGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE--DELFQ--S-IMEH-----  216 (324)
T ss_pred             ecCC---CCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--HHHHH--H-HHcC-----
Confidence            4321   12233456799999999999998999999999999999999999999975311  00000  0 0000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM-----NEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~-----~evl~~  806 (840)
                         ....+..   ....+.+++.+|+..||.+|++.     .++.++
T Consensus       217 ---~~~~~~~---~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  257 (324)
T cd05587         217 ---NVSYPKS---LSKEAVSICKGLLTKHPAKRLGCGPTGERDIREH  257 (324)
T ss_pred             ---CCCCCCC---CCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence               0111122   23456678889999999999976     666655

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=3.2e-36  Score=312.27  Aligned_cols=248  Identities=27%  Similarity=0.364  Sum_probs=197.2

Q ss_pred             CeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEE
Q 003199          532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVY  611 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~  611 (840)
                      +.||+|+||.||+|...+++.||+|.+....         .......+.+|++++++++||||+++++++......++||
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~---------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   71 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDL---------PQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVM   71 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcC---------CHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEE
Confidence            3699999999999988889999999874322         1223456889999999999999999999999999999999


Q ss_pred             eecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCC
Q 003199          612 EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG  691 (840)
Q Consensus       612 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~  691 (840)
                      ||+++++|.+++......+++..+..++.+++.||.|+|+   ++++||||||+||++++++.+|++|||++.....  .
T Consensus        72 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~--~  146 (250)
T cd05085          72 ELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDD--G  146 (250)
T ss_pred             ECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccChheEEEcCCCeEEECCCccceeccc--c
Confidence            9999999999997765568999999999999999999999   9999999999999999999999999999865432  1


Q ss_pred             CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       692 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                      .........++..|+|||++.+..++.++||||||+++||+++ |..||......  ...  .  .....      ....
T Consensus       147 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~--~~~--~--~~~~~------~~~~  214 (250)
T cd05085         147 IYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQ--QAR--E--QVEKG------YRMS  214 (250)
T ss_pred             ccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHH--HHH--H--HHHcC------CCCC
Confidence            1111122344578999999988889999999999999999998 99998653111  000  0  00000      0001


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ..   ......+.+++.+|+..+|++||++.|+++.|.
T Consensus       215 ~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         215 CP---QKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CC---CCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            11   123456778888999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1e-36  Score=333.36  Aligned_cols=257  Identities=24%  Similarity=0.277  Sum_probs=199.0

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|... +++.||+|++.....       ......+.+.+|+.+++.++||||+++++++.+
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~  114 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEM-------IKRSDSAFFWEERDIMAHANSEWIVQLHYAFQD  114 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-------hhhhhHHHHHHHHHHHHhCCCCCcceEEEEEec
Confidence            457888899999999999999654 789999999843211       112234557889999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++...  .+++..+..++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||++
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~l~~~--~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~kL~DfG~~  189 (370)
T cd05596         115 DKYLYMVMEYMPGGDLVNLMSNY--DIPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTC  189 (370)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEcCCCCEEEEeccce
Confidence            99999999999999999998764  47888899999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccC----CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSS----KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ......  .........||+.|+|||++.+.    .++.++|||||||++|||++|+.||.+...    ...+... ...
T Consensus       190 ~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~----~~~~~~i-~~~  262 (370)
T cd05596         190 MKMDAN--GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL----VGTYSKI-MDH  262 (370)
T ss_pred             eeccCC--CcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCH----HHHHHHH-HcC
Confidence            765321  11122345799999999988653    478999999999999999999999975311    1111110 000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT--RPTMNEVVQLL  807 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rps~~evl~~L  807 (840)
                      ..   .   ...+. .......+.+++.+|++.+|.+  ||++.|++++-
T Consensus       263 ~~---~---~~~~~-~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~  305 (370)
T cd05596         263 KN---S---LTFPD-DIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHP  305 (370)
T ss_pred             CC---c---CCCCC-cCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCc
Confidence            00   0   00111 1122345667888999999988  99999998873

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=9.4e-37  Score=328.03  Aligned_cols=245  Identities=27%  Similarity=0.351  Sum_probs=192.9

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||.||+|... +++.||||++......       .......+..|.+++..+ +||||+++++++......++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~l   73 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVIL-------QDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFF   73 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhh-------hhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEE
Confidence            36999999999999654 6889999998543211       122345567788888866 79999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|..++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~E~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~-  148 (321)
T cd05591          74 VMEYVNGGDLMFQIQRSR-KFDEPRSRFYAAEVTLALMFLHR---HGVIYRDLKLDNILLDAEGHCKLADFGMCKEGIL-  148 (321)
T ss_pred             EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeecccceeccc-
Confidence            999999999999987654 68999999999999999999999   9999999999999999999999999999875422 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  ...   ........        .
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~--~~~---~~~i~~~~--------~  213 (321)
T cd05591         149 --NGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNE--DDL---FESILHDD--------V  213 (321)
T ss_pred             --CCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCH--HHH---HHHHHcCC--------C
Confidence              12223345689999999999988999999999999999999999999975311  111   11000000        0


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCC-------CHHHHHHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRP-------TMNEVVQL  806 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-------s~~evl~~  806 (840)
                      ..+..   ...++.+++.+|++.||++||       ++.+++++
T Consensus       214 ~~p~~---~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         214 LYPVW---LSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             CCCCC---CCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence            01111   224566788899999999999       88888876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.5e-37  Score=335.25  Aligned_cols=256  Identities=23%  Similarity=0.336  Sum_probs=197.2

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||+||+|... +|+.||||++.....       ........+.+|+.++..++||||+++++++.+..
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~   74 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEM-------LEKEQVAHVRAERDILAEADNPWVVKLYYSFQDEN   74 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHh-------hhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC
Confidence            5778899999999999999654 789999999853221       11233456788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.++|+|||+++.
T Consensus        75 ~~~lv~E~~~~g~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~  150 (364)
T cd05599          75 YLYLIMEYLPGGDMMTLLMKKD-TFTEEETRFYIAETILAIDSIHK---LGYIHRDIKPDNLLLDAKGHIKLSDFGLCTG  150 (364)
T ss_pred             eEEEEECCCCCcHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEeeccccee
Confidence            9999999999999999998764 68999999999999999999999   9999999999999999999999999999875


Q ss_pred             hhccCCCC-----------------------------------cceecccccccccCccccccCCCCccccchhHHHHHH
Q 003199          686 LQARGGKD-----------------------------------STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLM  730 (840)
Q Consensus       686 ~~~~~~~~-----------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~  730 (840)
                      +.......                                   .......||+.|+|||++.+..++.++|||||||++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  230 (364)
T cd05599         151 LKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMY  230 (364)
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHH
Confidence            43211000                                   0011246999999999999889999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC---HHHHHHH
Q 003199          731 ELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT---MNEVVQL  806 (840)
Q Consensus       731 el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps---~~evl~~  806 (840)
                      ||++|+.||......     .............      ..+.. ......+.+++.+|+. +|.+|++   +.|++++
T Consensus       231 el~~G~~Pf~~~~~~-----~~~~~i~~~~~~~------~~~~~-~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h  296 (364)
T cd05599         231 EMLVGYPPFCSDNPQ-----ETYRKIINWKETL------QFPDE-VPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSH  296 (364)
T ss_pred             HhhcCCCCCCCCCHH-----HHHHHHHcCCCcc------CCCCC-CCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcC
Confidence            999999999753210     0000000000000      00110 0122345566778886 9999998   9999886

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-37  Score=335.39  Aligned_cols=257  Identities=27%  Similarity=0.366  Sum_probs=202.8

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|+||+||+|... +|+.||||++......       .......+.+|++++..++|+||+++++++.+..
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   74 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMI-------KRNQIAHVRAERDILADADSPWIVKLYYSFQDEE   74 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHh-------hccHHHHHHHHHHHHHhcCCCCccchhhheecCC
Confidence            5778899999999999999665 7899999998533211       1123467889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++... ..+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.
T Consensus        75 ~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~  150 (350)
T cd05573          75 HLYLVMEYMPGGDLMNLLIRK-DVFPEETARFYIAELVLALDSVHK---LGFIHRDIKPDNILIDADGHIKLADFGLCKK  150 (350)
T ss_pred             eEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEeecCCCCcc
Confidence            999999999999999999876 368999999999999999999999   9999999999999999999999999999977


Q ss_pred             hhccCC--------------------------CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCC
Q 003199          686 LQARGG--------------------------KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV  739 (840)
Q Consensus       686 ~~~~~~--------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~  739 (840)
                      ......                          .........||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf  230 (350)
T cd05573         151 MNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPF  230 (350)
T ss_pred             CcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCC
Confidence            643210                          011233457999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHHh
Q 003199          740 EDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-MNEVVQLL  807 (840)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-~~evl~~L  807 (840)
                      .....    ...+... .....   . .  ..+ ........+.+++.+|+. ||.+||+ +.+++++-
T Consensus       231 ~~~~~----~~~~~~i-~~~~~---~-~--~~p-~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp  286 (350)
T cd05573         231 YSDTL----QETYNKI-INWKE---S-L--RFP-PDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHP  286 (350)
T ss_pred             CCCCH----HHHHHHH-hccCC---c-c--cCC-CCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCC
Confidence            75321    1111110 00000   0 0  011 111134556678889997 9999999 99999873

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.6e-36  Score=315.55  Aligned_cols=256  Identities=23%  Similarity=0.311  Sum_probs=197.9

Q ss_pred             cCccCeeeccCCcEEEEEEeC-C---CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-S---GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      |...+.||+|+||.||+|... +   +..||||++......        ......+.+|++.++.++|+||+++++++..
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~   72 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHT--------YSEIEEFLSEAACMKDFDHPNVMKLIGVCFE   72 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCC--------HHHHHHHHHHHHHHHhCCCCCeeeEEeeecc
Confidence            456788999999999999654 2   367999998543211        2234678899999999999999999998866


Q ss_pred             Ccc------ceEEEeecCCCChHHHhhcC-----CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          604 LYC------NLLVYEYMPNGNLWDALHKG-----LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       604 ~~~------~~lV~e~~~~gsL~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      ...      .++|+||+++|+|..++...     ...+++..+..++.|++.||+|||+   .+++||||||+||+++++
T Consensus        73 ~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~---~~i~H~dlkp~Nil~~~~  149 (273)
T cd05035          73 ASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSN---RNFIHRDLAARNCMLRED  149 (273)
T ss_pred             CCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchheEEECCC
Confidence            554      68999999999999888542     2368999999999999999999999   999999999999999999


Q ss_pred             CCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhh
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~  751 (840)
                      +.+||+|||+++.+..... ........++..|+|||++.+..++.++||||||+++|||++ |..||.+...  .....
T Consensus       150 ~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~--~~~~~  226 (273)
T cd05035         150 MTVCVADFGLSKKIYSGDY-YRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN--HEIYD  226 (273)
T ss_pred             CeEEECCccceeecccccc-ccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH--HHHHH
Confidence            9999999999986643211 112222345678999999988889999999999999999999 8899865321  11111


Q ss_pred             hhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      +   ..          ..............+.+++.+|++.||++||++.|+++.|+++
T Consensus       227 ~---~~----------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         227 Y---LR----------HGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             H---HH----------cCCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            1   11          0111111122345678888899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-36  Score=335.28  Aligned_cols=257  Identities=21%  Similarity=0.302  Sum_probs=196.0

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|+||+||+|.. .+|+.||||++.....       ......+.+.+|++++++++||||+++++++.+..
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~   74 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEM-------FKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQ   74 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHH-------HHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC
Confidence            577889999999999999954 5789999999843211       11233567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~ql~~aL~~LH~---~givHrDlkp~NIll~~~~~~kl~DfGla~~  150 (377)
T cd05629          75 YLYLIMEFLPGGDLMTMLIKYD-TFSEDVTRFYMAECVLAIEAVHK---LGFIHRDIKPDNILIDRGGHIKLSDFGLSTG  150 (377)
T ss_pred             eeEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEEeecccccc
Confidence            9999999999999999997654 68899999999999999999999   9999999999999999999999999999964


Q ss_pred             hhccCCC----------Cc----------------------------------ceecccccccccCccccccCCCCcccc
Q 003199          686 LQARGGK----------DS----------------------------------TTTVIAGTYGYLAPEYAYSSKATTKCD  721 (840)
Q Consensus       686 ~~~~~~~----------~~----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~D  721 (840)
                      +......          ..                                  ......||+.|+|||++.+..++.++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  230 (377)
T cd05629         151 FHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECD  230 (377)
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCcee
Confidence            3211000          00                                  001246999999999999889999999


Q ss_pred             chhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCC---C
Q 003199          722 VYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR---P  798 (840)
Q Consensus       722 v~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---p  798 (840)
                      ||||||++|||++|+.||......    ..+.. .......      ..++ ........+.+++.+|+. +|.+|   +
T Consensus       231 iwSlGvil~elltG~~Pf~~~~~~----~~~~~-i~~~~~~------~~~p-~~~~~s~~~~dli~~lL~-~~~~r~~r~  297 (377)
T cd05629         231 WWSLGAIMFECLIGWPPFCSENSH----ETYRK-IINWRET------LYFP-DDIHLSVEAEDLIRRLIT-NAENRLGRG  297 (377)
T ss_pred             eEecchhhhhhhcCCCCCCCCCHH----HHHHH-HHccCCc------cCCC-CCCCCCHHHHHHHHHHhc-CHhhcCCCC
Confidence            999999999999999999753210    00000 0000000      0011 111123455667778987 66665   5


Q ss_pred             CHHHHHHHh
Q 003199          799 TMNEVVQLL  807 (840)
Q Consensus       799 s~~evl~~L  807 (840)
                      ++.|++++-
T Consensus       298 ~~~~~l~hp  306 (377)
T cd05629         298 GAHEIKSHP  306 (377)
T ss_pred             CHHHHhcCC
Confidence            999999874

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=5.4e-37  Score=329.59  Aligned_cols=240  Identities=27%  Similarity=0.355  Sum_probs=190.3

Q ss_pred             CeeeccCCcEEEEEEe----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccc
Q 003199          532 NKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  607 (840)
                      +.||+|+||.||++..    .+|+.||+|++......        ......+..|++++++++||||+++++++.+....
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   73 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK--------VRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKL   73 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhh--------hhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEE
Confidence            5799999999999854    36899999998543211        12234567899999999999999999999999999


Q ss_pred             eEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhh
Q 003199          608 LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ  687 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~  687 (840)
                      ++||||+++|+|.+++.+.. .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++...
T Consensus        74 ~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  149 (318)
T cd05582          74 YLILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESI  149 (318)
T ss_pred             EEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHeEECCCCcEEEeeccCCcccC
Confidence            99999999999999997654 68999999999999999999999   999999999999999999999999999987653


Q ss_pred             ccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhc
Q 003199          688 ARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL  767 (840)
Q Consensus       688 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  767 (840)
                      ..   ........||+.|+|||.+.+..++.++|||||||++|||++|+.||.....  .   ..........       
T Consensus       150 ~~---~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~--~---~~~~~i~~~~-------  214 (318)
T cd05582         150 DH---EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDR--K---ETMTMILKAK-------  214 (318)
T ss_pred             CC---CCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCH--H---HHHHHHHcCC-------
Confidence            21   1223346799999999999888899999999999999999999999975311  0   0000000000       


Q ss_pred             ccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 003199          768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE  802 (840)
Q Consensus       768 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~e  802 (840)
                       ..++..   ....+.+++.+|++.||++||++.+
T Consensus       215 -~~~p~~---~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         215 -LGMPQF---LSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             -CCCCCC---CCHHHHHHHHHHhhcCHhHcCCCCC
Confidence             011122   2345667888999999999999433

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.8e-36  Score=319.27  Aligned_cols=248  Identities=25%  Similarity=0.309  Sum_probs=192.9

Q ss_pred             eeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       534 lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      ||+|+||+||+|.. .+|+.||||.+.....       ......+.+..|+++++.++|+||+++.+++......++|||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~-------~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   73 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRL-------KKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMT   73 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHH-------hhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEe
Confidence            69999999999855 4789999999843321       112234567889999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          613 YMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       613 ~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      |+++|+|.+.+..   ....+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.++|+|||++......
T Consensus        74 ~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  150 (280)
T cd05608          74 IMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDG  150 (280)
T ss_pred             CCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCccceecCCC
Confidence            9999999887743   23468999999999999999999999   99999999999999999999999999998765331


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                         ........||+.|+|||++.+..++.++|||||||++|||++|+.||......... ....          ......
T Consensus       151 ---~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~-~~~~----------~~~~~~  216 (280)
T cd05608         151 ---QSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELK----------QRILND  216 (280)
T ss_pred             ---CccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhH-HHHH----------Hhhccc
Confidence               11223457899999999999999999999999999999999999999753211110 0000          000000


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      . ..........+.+++.+|++.||++||     ++++++++
T Consensus       217 ~-~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h  257 (280)
T cd05608         217 S-VTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTH  257 (280)
T ss_pred             C-CCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcC
Confidence            0 011112334567788899999999999     77888875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=5.2e-36  Score=314.03  Aligned_cols=260  Identities=19%  Similarity=0.269  Sum_probs=205.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|+..+.||+|+||.||+|.. .+++.||||.+.....       ........+.+|+++++.++|||++++++++...
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   74 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEM-------MDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIED   74 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeecccc-------CCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEEC
Confidence            3577888999999999999965 4789999998743221       1123456788999999999999999999999998


Q ss_pred             ccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          605 YCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ...++|+||+++|+|.+++..   ....+++..+..++.|++.||+|||+   ++++|+||||+||+++.++.++|+|||
T Consensus        75 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~nil~~~~~~~~l~d~g  151 (267)
T cd08228          75 NELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHS---RRVMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             CeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCCHHHEEEcCCCCEEECccc
Confidence            999999999999999988753   22357889999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      .+......   ........|++.|+|||.+.+..++.++||||||+++|||++|+.||......   ...+....     
T Consensus       152 ~~~~~~~~---~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~---~~~~~~~~-----  220 (267)
T cd08228         152 LGRFFSSK---TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LFSLCQKI-----  220 (267)
T ss_pred             cceeccch---hHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcccccc---HHHHHHHH-----
Confidence            98765331   11223346888999999998888999999999999999999999998643211   11111110     


Q ss_pred             chhhhcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          762 GIMEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       762 ~~~~~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                           .....++.. ......+.+++.+||..+|++||++.++++.++.+.
T Consensus       221 -----~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         221 -----EQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             -----hcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence                 001111111 233456778888999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=2.5e-36  Score=319.23  Aligned_cols=255  Identities=21%  Similarity=0.305  Sum_probs=198.4

Q ss_pred             hcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      .|...+.||+|+||.||+|...      +++.||+|++....         .......+.+|+.++..++||||++++++
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~e~~~~~~l~h~~iv~~~~~   76 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA---------EGPLREEFKHEAMMRSRLQHPNIVCLLGV   76 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC---------CHHHHHHHHHHHHHHhcCCCCCcCeEEEE
Confidence            4556778999999999999653      25789999985322         12235678899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcC---------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCC
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKG---------------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKST  665 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~  665 (840)
                      +......++++||+++++|.+++...               ...+++..+..++.|++.||+|+|+   ++|+||||||+
T Consensus        77 ~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~---~gi~H~dlkp~  153 (283)
T cd05091          77 VTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS---HHVVHKDLATR  153 (283)
T ss_pred             EcCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---cCccccccchh
Confidence            99999999999999999999998532               1247888999999999999999999   99999999999


Q ss_pred             CEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCC
Q 003199          666 NILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG  744 (840)
Q Consensus       666 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~  744 (840)
                      ||++++++.+||+|||+++...... .........+++.|+|||++.+..++.++||||||+++|||++ |..||.+...
T Consensus       154 Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~  232 (283)
T cd05091         154 NVLVFDKLNVKISDLGLFREVYAAD-YYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN  232 (283)
T ss_pred             heEecCCCceEecccccccccccch-heeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH
Confidence            9999999999999999987653321 1112233446789999999988889999999999999999998 8888864211


Q ss_pred             CCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                           ..+...          +.+........+....+.+++.+|++.+|++||++++|++.|+.
T Consensus       233 -----~~~~~~----------i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         233 -----QDVIEM----------IRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             -----HHHHHH----------HHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence                 111111          11111111112234456778889999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.7e-36  Score=313.62  Aligned_cols=259  Identities=25%  Similarity=0.357  Sum_probs=202.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|++|.||+|.. .+++.||+|.+......     .......+.+.+|++++++++||||+++++++.+.
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~-----~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   76 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDS-----PETKKEVNALECEIQLLKNLQHERIVQYYGCLRDD   76 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccc-----hhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccC
Confidence            3577788999999999999954 57899999988543211     11123346789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++|+||+++++|.+++.... .+++..+..++.|++.|++|||+   .+++||||+|+||++++++.++|+|||+++
T Consensus        77 ~~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nilv~~~~~~~l~dfg~~~  152 (263)
T cd06625          77 ETLSIFMEYMPGGSVKDQLKAYG-ALTETVTRKYTRQILEGVEYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASK  152 (263)
T ss_pred             CeEEEEEEECCCCcHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccce
Confidence            99999999999999999987654 58899999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ................|+..|+|||++.+..++.++||||+|+++|||++|+.||.....    .........  ..   
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~~~~~--~~---  223 (263)
T cd06625         153 RLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEA----MAAIFKIAT--QP---  223 (263)
T ss_pred             eccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccch----HHHHHHHhc--cC---
Confidence            653311111111345678899999999998899999999999999999999999864311    100000000  00   


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                        ....++.   .....+.+++.+|+..+|.+||++.+++++.
T Consensus       224 --~~~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~  261 (263)
T cd06625         224 --TNPQLPS---HVSPDARNFLRRTFVENAKKRPSAEELLRHF  261 (263)
T ss_pred             --CCCCCCc---cCCHHHHHHHHHHhhcCcccCCCHHHHhhCC
Confidence              0011111   2234566788899999999999999998763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=2e-36  Score=324.19  Aligned_cols=244  Identities=27%  Similarity=0.404  Sum_probs=189.7

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||+||+|... +++.||||++......       .......+..|..++... +||||+++++++.+.+..++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~l   73 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVL-------MDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFF   73 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-------hcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEE
Confidence            46999999999999665 6789999998543211       011234456677777754 89999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~ey~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~-  148 (316)
T cd05619          74 VMEYLNGGDLMFHIQSCH-KFDLPRATFYAAEIICGLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGMCKENML-  148 (316)
T ss_pred             EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEccCCcceECCC-
Confidence            999999999999997653 68999999999999999999999   9999999999999999999999999999864321 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  .....  ...         ....
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--~~~~~--~i~---------~~~~  213 (316)
T cd05619         149 --GDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE--EELFQ--SIR---------MDNP  213 (316)
T ss_pred             --CCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH--HHHHH--HHH---------hCCC
Confidence              11223445789999999999988999999999999999999999999975311  11100  000         0011


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH-HHHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN-EVVQ  805 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~-evl~  805 (840)
                      ..+..   ....+.+++.+|++.||++||++. ++.+
T Consensus       214 ~~~~~---~~~~~~~li~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         214 CYPRW---LTREAKDILVKLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             CCCcc---CCHHHHHHHHHHhccCHhhcCCChHHHHc
Confidence            11111   223466788899999999999997 6654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=5.8e-36  Score=317.07  Aligned_cols=265  Identities=25%  Similarity=0.315  Sum_probs=203.1

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      .++|+..+.||+|+||.||+|..+      .+..||+|.+....         .......+.+|+.+++.++|+||++++
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~e~~~l~~l~~~~i~~~~   75 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA---------SLRERIEFLNEASVMKGFTCHHVVRLL   75 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC---------CHHHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            467888999999999999998543      24579999874221         122234578899999999999999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC---------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL---------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL  669 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill  669 (840)
                      +++.+....++||||+++|+|.+++....         ...++..+..++.|++.||+|||+   ++|+||||||+||++
T Consensus        76 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dikp~nili  152 (288)
T cd05061          76 GVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMV  152 (288)
T ss_pred             EEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCCChheEEE
Confidence            99999999999999999999999997531         234677889999999999999999   999999999999999


Q ss_pred             cCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcc
Q 003199          670 DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKN  748 (840)
Q Consensus       670 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~  748 (840)
                      ++++.++++|||+++...... .........++..|+|||.+.+..++.++|||||||++|||++ |..||.....  . 
T Consensus       153 ~~~~~~~L~Dfg~~~~~~~~~-~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~--~-  228 (288)
T cd05061         153 AHDFTVKIGDFGMTRDIYETD-YYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN--E-  228 (288)
T ss_pred             cCCCcEEECcCCccccccccc-cccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH--H-
Confidence            999999999999987653211 1111222345678999999988899999999999999999999 7888864211  1 


Q ss_pred             hhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCC
Q 003199          749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFES  817 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~  817 (840)
                        .....          ..+.............+.+++.+|++.||++|||+.++++.+++.....+..
T Consensus       229 --~~~~~----------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~  285 (288)
T cd05061         229 --QVLKF----------VMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPE  285 (288)
T ss_pred             --HHHHH----------HHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCC
Confidence              11111          1111111111122356788888999999999999999999998765444443

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=1.7e-36  Score=324.80  Aligned_cols=245  Identities=27%  Similarity=0.350  Sum_probs=190.1

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||.||+|... +|+.||+|++......       .......+..|..++... +||||+++++++.+.+..++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-------~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~l   73 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVL-------IDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFF   73 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-------hcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEE
Confidence            46999999999999665 6899999998543211       011234456677777654 89999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|..++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~E~~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~-  148 (316)
T cd05620          74 VMEFLNGGDLMFHIQDKG-RFDLYRATFYAAEIVCGLQFLHS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVF-  148 (316)
T ss_pred             EECCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEeCccCCCeeccc-
Confidence            999999999999987654 68999999999999999999999   9999999999999999999999999999864321 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                        .........||+.|+|||++.+..++.++||||+||++|||++|+.||.....  ..  .+.....         ...
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~--~~--~~~~~~~---------~~~  213 (316)
T cd05620         149 --GDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE--DE--LFESIRV---------DTP  213 (316)
T ss_pred             --CCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--HH--HHHHHHh---------CCC
Confidence              12233456799999999999999999999999999999999999999975311  11  1111000         011


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH-HHHHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN-EVVQL  806 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~-evl~~  806 (840)
                      ..+..   ...++.+++.+|++.||++||++. ++.++
T Consensus       214 ~~~~~---~~~~~~~li~~~l~~dP~~R~~~~~~~~~h  248 (316)
T cd05620         214 HYPRW---ITKESKDILEKLFERDPTRRLGVVGNIRGH  248 (316)
T ss_pred             CCCCC---CCHHHHHHHHHHccCCHHHcCCChHHHHcC
Confidence            11222   223566788899999999999984 66543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=5.6e-36  Score=314.71  Aligned_cols=255  Identities=24%  Similarity=0.305  Sum_probs=193.9

Q ss_pred             CccCeeeccCCcEEEEEEeCC-Cc--EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC-
Q 003199          529 TEKNKVGQGGSGTVYKIDLNS-GE--VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-  604 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~~-~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-  604 (840)
                      ...+.||+|+||.||+|...+ +.  .||+|.+.....        .....+.+.+|+++++.++|+||+++++++... 
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   73 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAIC--------TRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTV   73 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcC--------CHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCC
Confidence            456789999999999997654 33  589998743221        123356788999999999999999999987432 


Q ss_pred             -----ccceEEEeecCCCChHHHhhcC-----CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          605 -----YCNLLVYEYMPNGNLWDALHKG-----LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       605 -----~~~~lV~e~~~~gsL~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                           ...++||||+++|+|.+++...     ...+++..+..++.|++.||+|||+   ++|+||||||+||++++++.
T Consensus        74 ~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~  150 (272)
T cd05075          74 ESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSS---KSFIHRDLAARNCMLNENMN  150 (272)
T ss_pred             cccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhheEEcCCCC
Confidence                 2468999999999999887421     2357899999999999999999999   99999999999999999999


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~  753 (840)
                      +||+|||+++.+.... .........+++.|+|||+..+..++.++||||||+++|||++ |+.||....  ....  +.
T Consensus       151 ~kl~Dfg~~~~~~~~~-~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~--~~  225 (272)
T cd05075         151 VCVADFGLSKKIYNGD-YYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE--NSEI--YD  225 (272)
T ss_pred             EEECCCCcccccCccc-ceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC--HHHH--HH
Confidence            9999999998764321 1111223346778999999998899999999999999999999 889986521  1111  11


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ... .          .............+.+++.+||+.||++|||+.++++.|+++
T Consensus       226 ~~~-~----------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         226 YLR-Q----------GNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             HHH-c----------CCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            100 0          000011112234567888899999999999999999999764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=5.4e-36  Score=312.47  Aligned_cols=252  Identities=26%  Similarity=0.390  Sum_probs=199.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.|...++||+|+||.||+|..++++.||+|.+.....           ....+.+|+.++++++|+|++++++++. ..
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-----------~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~   73 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-----------SPEAFLAEANLMKQLQHPRLVRLYAVVT-QE   73 (260)
T ss_pred             HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC-----------cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cC
Confidence            56778899999999999999888899999998853321           1346888999999999999999999874 45


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++... ...+++.++..++.|++.||+|||+   .+++||||||+||++++++.++++|||++.
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  150 (260)
T cd05067          74 PIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIER---KNYIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             CcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHHhEEEcCCCCEEEccCccee
Confidence            689999999999999998653 3468999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  .........++..|+|||++....++.++||||||+++||+++ |+.||.+...  .......    ..    
T Consensus       151 ~~~~~--~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~----~~----  218 (260)
T cd05067         151 LIEDN--EYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN--PEVIQNL----ER----  218 (260)
T ss_pred             ecCCC--CcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh--HHHHHHH----Hc----
Confidence            65421  1111223345678999999988889999999999999999999 9999975321  1111100    00    


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                        .......   .....++.+++.+|+..+|++||+++++...|+.
T Consensus       219 --~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         219 --GYRMPRP---DNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             --CCCCCCC---CCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence              0000111   1223467788889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.5e-36  Score=326.68  Aligned_cols=245  Identities=26%  Similarity=0.325  Sum_probs=189.2

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHH-HHhccCCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE-TLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||+||+|... +|+.||||++......       .....+.+..|.. +++.++||||+++++++.+.+..++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~l   73 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAIL-------KKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYF   73 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHh-------hhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEE
Confidence            36999999999999654 7999999998433211       1112234444544 5678999999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|..++.... .+++..+..++.||+.||+|||+   ++|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~-  148 (323)
T cd05575          74 VLDYVNGGELFFHLQRER-SFPEPRARFYAAEIASALGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIE-  148 (323)
T ss_pred             EEcCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeccCCCccccc-
Confidence            999999999999987654 68999999999999999999999   9999999999999999999999999999875322 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||....     ...........        ..
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~-----~~~~~~~i~~~--------~~  213 (323)
T cd05575         149 --HSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD-----TAEMYDNILNK--------PL  213 (323)
T ss_pred             --CCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC-----HHHHHHHHHcC--------CC
Confidence              1222344579999999999999899999999999999999999999997531     01111000000        01


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH----HHHHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN----EVVQL  806 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~----evl~~  806 (840)
                      .+.+..   ...+.+++.+|++.||++||++.    +++++
T Consensus       214 ~~~~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~  251 (323)
T cd05575         214 RLKPNI---SVSARHLLEGLLQKDRTKRLGAKDDFLEIKNH  251 (323)
T ss_pred             CCCCCC---CHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcC
Confidence            112222   34567788899999999999884    55543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=3.4e-36  Score=316.71  Aligned_cols=248  Identities=27%  Similarity=0.312  Sum_probs=191.4

Q ss_pred             eeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       534 lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      ||+|+||.||++.. .+|+.||+|++......       .....+.+..|++++++++||||+++++++......++|||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~-------~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e   73 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLK-------KKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMS   73 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhh-------cchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEe
Confidence            69999999999965 46999999998432211       11123445669999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCC
Q 003199          613 YMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG  691 (840)
Q Consensus       613 ~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~  691 (840)
                      |+++++|.+++... ...+++..+..++.|++.|++|||+   .+|+||||||+||+++.++.++|+|||++.....   
T Consensus        74 ~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~---  147 (277)
T cd05607          74 LMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKD---  147 (277)
T ss_pred             cCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH---CCEEEccCChHhEEEcCCCCEEEeeceeeeecCC---
Confidence            99999999888654 2458899999999999999999999   9999999999999999999999999999876532   


Q ss_pred             CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccccc
Q 003199          692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKL  771 (840)
Q Consensus       692 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  771 (840)
                       ........|+..|+|||++.+..++.++||||+||++|||++|+.||....... .......          .......
T Consensus       148 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~-~~~~~~~----------~~~~~~~  215 (277)
T cd05607         148 -GKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKV-AKEELKR----------RTLEDEV  215 (277)
T ss_pred             -CceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchh-hHHHHHH----------Hhhcccc
Confidence             122234568999999999988889999999999999999999999997532111 1111100          0011111


Q ss_pred             CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          772 SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       772 ~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .........++.+++.+|++.||++||+++|+++.
T Consensus       216 ~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~  250 (277)
T cd05607         216 KFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDD  250 (277)
T ss_pred             ccccccCCHHHHHHHHHHhccCHhhCCCCccchhh
Confidence            10111233456778889999999999999766543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=7.7e-36  Score=311.23  Aligned_cols=252  Identities=29%  Similarity=0.429  Sum_probs=198.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|...+.||+|++|.||+|...++..||+|.+....           ...+.+.+|+.++++++|+|++++++++.. .
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-----------~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~   73 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-----------MMPEAFLQEAQIMKKLRHDKLVPLYAVVSE-E   73 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-----------ccHHHHHHHHHHHHhCCCCCeeeEEEEEcC-C
Confidence            4577788999999999999988877789999874322           123567889999999999999999998854 5


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+   .+++||||||+||++++++.++|+|||.++
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dl~~~Nill~~~~~~~l~dfg~~~  150 (260)
T cd05069          74 PIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLAR  150 (260)
T ss_pred             CcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCeEEECCCccce
Confidence            6789999999999999997643 357999999999999999999999   899999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  .........++..|+|||+..+..++.++||||||+++|||++ |+.||.+...  .....+.          
T Consensus       151 ~~~~~--~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~~----------  216 (260)
T cd05069         151 LIEDN--EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN--REVLEQV----------  216 (260)
T ss_pred             EccCC--cccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHH----------
Confidence            65331  1111122345678999999988889999999999999999999 9999875321  1111110          


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                         ...............+.+++.+|+.+||++||+++++++.|++
T Consensus       217 ---~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         217 ---ERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             ---HcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence               0000011112334567788889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=1.8e-36  Score=334.00  Aligned_cols=205  Identities=24%  Similarity=0.362  Sum_probs=172.7

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|+..+.||+|+||+||+|.. .+++.||||++....       .........+.+|+.++++++|+||+++++++.+..
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~-------~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~   74 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKD-------VLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKD   74 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHH-------hhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCC
Confidence            477888999999999999955 578999999984322       111234567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.+.. .+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+||+|||+++.
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~al~~lH~---~~ivHrDlKp~NILl~~~g~~kL~DFGla~~  150 (382)
T cd05625          75 NLYFVMDYIPGGDMMSLLIRMG-IFPEDLARFYIAELTCAVESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (382)
T ss_pred             EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEeECCCCcc
Confidence            9999999999999999997654 68899999999999999999999   9999999999999999999999999999753


Q ss_pred             hhccCC--------------------------------------------CCcceecccccccccCccccccCCCCcccc
Q 003199          686 LQARGG--------------------------------------------KDSTTTVIAGTYGYLAPEYAYSSKATTKCD  721 (840)
Q Consensus       686 ~~~~~~--------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  721 (840)
                      +.....                                            .........||+.|+|||++.+..++.++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~D  230 (382)
T cd05625         151 FRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCD  230 (382)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeee
Confidence            311000                                            000012346999999999999989999999


Q ss_pred             chhHHHHHHHHHhCCCCCCCC
Q 003199          722 VYSFGVVLMELITGRKPVEDD  742 (840)
Q Consensus       722 v~slG~il~el~tg~~p~~~~  742 (840)
                      |||+||++|||++|+.||...
T Consensus       231 iwSlGvil~elltG~~Pf~~~  251 (382)
T cd05625         231 WWSVGVILYEMLVGQPPFLAQ  251 (382)
T ss_pred             EEechHHHHHHHhCCCCCCCC
Confidence            999999999999999999753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2e-36  Score=324.89  Aligned_cols=245  Identities=27%  Similarity=0.341  Sum_probs=193.4

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||+||+|... +++.||||++......       .......+..|.+++..+ +||||+++++++...+..++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~l   73 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVIL-------QDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFF   73 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHh-------hhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEE
Confidence            46999999999999665 6889999998543211       112345567888888877 69999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|..++.... .+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++.... 
T Consensus        74 v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~-  148 (318)
T cd05570          74 VMEYVNGGDLMFHIQRSG-RFDEPRARFYAAEIVLGLQFLHE---RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGIL-  148 (318)
T ss_pred             EEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeEccCCCHHHeEECCCCcEEecccCCCeecCc-
Confidence            999999999999887764 68999999999999999999999   9999999999999999999999999999865321 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||....  ...   ........        ..
T Consensus       149 --~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~--~~~---~~~~i~~~--------~~  213 (318)
T cd05570         149 --GGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDD--EDE---LFQSILED--------EV  213 (318)
T ss_pred             --CCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCC--HHH---HHHHHHcC--------CC
Confidence              1122234568999999999999999999999999999999999999997531  110   00000000        01


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTM-----NEVVQL  806 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~-----~evl~~  806 (840)
                      ..+..   ....+.+++.+|++.||.+||++     .+++++
T Consensus       214 ~~~~~---~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~  252 (318)
T cd05570         214 RYPRW---LSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGH  252 (318)
T ss_pred             CCCCc---CCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcC
Confidence            11111   23456778889999999999999     888775

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.5e-36  Score=329.77  Aligned_cols=257  Identities=23%  Similarity=0.284  Sum_probs=196.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|... +++.||+|++.....       ......+.+.+|+.+++.++||||+++++++.+
T Consensus        42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (370)
T cd05621          42 AEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEM-------IKRSDSAFFWEERDIMAFANSPWVVQLFCAFQD  114 (370)
T ss_pred             HHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHh-------hhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc
Confidence            357888899999999999999665 688999999843221       112234567889999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++...  .+++..+..++.|++.||+|||+   ++|+||||||+|||+++++.+||+|||+|
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~l~~~--~~~~~~~~~~~~qil~aL~~LH~---~~IvHrDLKp~NILl~~~~~~kL~DFG~a  189 (370)
T cd05621         115 DKYLYMVMEYMPGGDLVNLMSNY--DVPEKWAKFYTAEVVLALDAIHS---MGLIHRDVKPDNMLLDKHGHLKLADFGTC  189 (370)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEEecccc
Confidence            99999999999999999999764  57889999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccC----CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSS----KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ......  .........||+.|+|||++.+.    .++.++||||+||++|||++|+.||.....    ...... ....
T Consensus       190 ~~~~~~--~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~----~~~~~~-i~~~  262 (370)
T cd05621         190 MKMDET--GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSL----VGTYSK-IMDH  262 (370)
T ss_pred             eecccC--CceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCH----HHHHHH-HHhC
Confidence            765321  11222456799999999998654    378899999999999999999999975311    000110 0000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT--RPTMNEVVQLL  807 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rps~~evl~~L  807 (840)
                      ..      ....+. .......+.+++..|+..+|.+  ||++.|++++-
T Consensus       263 ~~------~~~~p~-~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp  305 (370)
T cd05621         263 KN------SLNFPE-DVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHP  305 (370)
T ss_pred             Cc------ccCCCC-cccCCHHHHHHHHHHccCchhccCCCCHHHHhcCc
Confidence            00      000111 1112344556677888755543  89999999983

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=6e-36  Score=311.44  Aligned_cols=250  Identities=27%  Similarity=0.386  Sum_probs=201.3

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|++|.||+|..+ +|+.|++|.+......        ....+.+.+|+++++.++|||++++++++.+...
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   73 (256)
T cd08529           2 FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMN--------RREREEAIDEARVLAKLDSSYIIRYYESFLDKGK   73 (256)
T ss_pred             ceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCC--------HHHHHHHHHHHHHHHhcCCCCeehheeeeccCCE
Confidence            566788999999999999654 6899999987432211        2335678899999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          607 NLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      .++||||+++++|.+++... ...+++..+..++.+++.||.|||+   .+++|+||||+||+++.++.++|+|||+++.
T Consensus        74 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~---~~i~h~dl~~~nili~~~~~~~l~df~~~~~  150 (256)
T cd08529          74 LNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVAKL  150 (256)
T ss_pred             EEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEeCCCCEEEccccccee
Confidence            99999999999999999775 3578999999999999999999999   9999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ....   ........|++.|+|||+..+..++.++||||||+++|||++|+.||....  .....             ..
T Consensus       151 ~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~-------------~~  212 (256)
T cd08529         151 LSDN---TNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN--QGALI-------------LK  212 (256)
T ss_pred             ccCc---cchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC--HHHHH-------------HH
Confidence            6432   112234568889999999999889999999999999999999999996532  10000             00


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ................+.+++.+||+.+|++||++.+++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         213 IIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             HHcCCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence            11111111111334567788889999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=3.7e-39  Score=336.60  Aligned_cols=366  Identities=29%  Similarity=0.395  Sum_probs=309.9

Q ss_pred             CCCCCEEecCCCcCc-ccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCC
Q 003199           16 MQNLRRLDLSNNLFT-GQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSL   94 (840)
Q Consensus        16 l~~L~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   94 (840)
                      |+-.+-.|+++|.++ +..|.....++++++|.|++.   ++.                         .+|+.++.+.+|
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt---~L~-------------------------~vPeEL~~lqkL   57 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT---KLE-------------------------QVPEELSRLQKL   57 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechh---hhh-------------------------hChHHHHHHhhh
Confidence            344566899999999 678999999999999999988   443                         345667777788


Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeec
Q 003199           95 TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN  174 (840)
Q Consensus        95 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  174 (840)
                      ++|.+++|++. .+-.+++.|+.|+.+.+..|++-...+|..+..+..|+.||||+|+++ ..|..+...+++-+|+|++
T Consensus        58 EHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~  135 (1255)
T KOG0444|consen   58 EHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY  135 (1255)
T ss_pred             hhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEccc
Confidence            88888888887 667778888888888888888777788888889999999999999999 7888999999999999999


Q ss_pred             cccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhccccc-ccccC
Q 003199          175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM-FSGVL  253 (840)
Q Consensus       175 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~  253 (840)
                      |+|..++...|.+++.|-.||||+|++. .+|+-...+..|++|+|++|.+.-.--..+-.+.+|+.|.+++.+ -...+
T Consensus       136 N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~  214 (1255)
T KOG0444|consen  136 NNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI  214 (1255)
T ss_pred             CccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence            9998888888889999999999999998 677778889999999999998764333334445677777777654 33467


Q ss_pred             CcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccC
Q 003199          254 PDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI  333 (840)
Q Consensus       254 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  333 (840)
                      |.++..+.||..+|+|.|.+. .+|+.+..+++|+.|+||+|+|+. ..-..+.+.+|+.|+||.|+++ .+|.++++++
T Consensus       215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~  291 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT  291 (1255)
T ss_pred             CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence            888999999999999999998 899999999999999999999984 4445677889999999999998 8899999999


Q ss_pred             cccEEEcCCCccC-CCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEc
Q 003199          334 SLVKIDLSDNLLS-GPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINF  411 (840)
Q Consensus       334 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l  411 (840)
                      +|+.|++.+|+++ .-+|..++.+.+|+.+..++|.+. .+|+.++.|..|+.|.|++|+|- ++|+.+.-+ .+..||+
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl  369 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL  369 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence            9999999999986 358999999999999999999997 88999999999999999999998 789888776 4688999


Q ss_pred             cCCCCc
Q 003199          412 SNNRLS  417 (840)
Q Consensus       412 ~~N~l~  417 (840)
                      ..|+--
T Consensus       370 reNpnL  375 (1255)
T KOG0444|consen  370 RENPNL  375 (1255)
T ss_pred             cCCcCc
Confidence            998644

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-36  Score=321.08  Aligned_cols=255  Identities=27%  Similarity=0.350  Sum_probs=211.5

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCY  600 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~  600 (840)
                      ...+.|+..+.||+|.||.||++..+ +|+.+|+|.+.+.....       ......+.+|+.+|+++. |||||.+.+.
T Consensus        32 ~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~-------~~~~~~v~~Ev~il~~l~~hpniv~l~~~  104 (382)
T KOG0032|consen   32 DIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRG-------KEDREDVRREVAILQQLSGHPNIVQLKDA  104 (382)
T ss_pred             cccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccc-------cccHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence            34456777889999999999999655 59999999996655321       113567899999999998 9999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC----CCCe
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN----YQPK  676 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~----~~~k  676 (840)
                      +++....++|||++.||.|.+.+...  .+++.++..++.|++.|+.|||+   .||||||+||+|+|+...    +.+|
T Consensus       105 ~e~~~~~~lvmEL~~GGeLfd~i~~~--~~sE~da~~~~~~il~av~~lH~---~gvvHrDlKpEN~L~~~~~~~~~~ik  179 (382)
T KOG0032|consen  105 FEDPDSVYLVMELCEGGELFDRIVKK--HYSERDAAGIIRQILEAVKYLHS---LGVVHRDLKPENLLLASKDEGSGRIK  179 (382)
T ss_pred             EEcCCeEEEEEEecCCchHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHh---CCceeccCCHHHeeeccccCCCCcEE
Confidence            99999999999999999999999876  38999999999999999999999   999999999999999643    4799


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      ++|||+|.....    .......+||+.|+|||++....|+..+||||+|+++|.|++|.+||.+........       
T Consensus       180 ~~DFGla~~~~~----~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~-------  248 (382)
T KOG0032|consen  180 LIDFGLAKFIKP----GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL-------  248 (382)
T ss_pred             EeeCCCceEccC----CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH-------
Confidence            999999988643    445667899999999999999999999999999999999999999998753211111       


Q ss_pred             hccccchhhhcccc---cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          757 VDTKEGIMEVLDKK---LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       757 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                              .+....   ..+.+......+.+++..|+..||.+|+|+.++++|-+
T Consensus       249 --------~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpW  295 (382)
T KOG0032|consen  249 --------AILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPW  295 (382)
T ss_pred             --------HHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcCcc
Confidence                    111111   12334455666777888999999999999999999844

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=4.6e-36  Score=345.36  Aligned_cols=262  Identities=24%  Similarity=0.310  Sum_probs=201.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|+..+.||+|+||.||+|.. .+|+.||||++.....       ......+.+.+|++++++++||||+++++++.+.
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~-------~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~   74 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLS-------ENPLLKKRFLREAKIAADLIHPGIVPVYSICSDG   74 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccc-------cCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeC
Confidence            4678889999999999999965 4689999999853221       1133456789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC----------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG----------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~----------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      +..++||||+++|+|.+++...          ....++..+..++.||++||+|||+   ++|+||||||+||+++.++.
T Consensus        75 ~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs---~GIIHRDLKPeNILLd~dg~  151 (932)
T PRK13184         75 DPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHS---KGVLHRDLKPDNILLGLFGE  151 (932)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHH---CCccccCCchheEEEcCCCC
Confidence            9999999999999999988642          1245677889999999999999999   99999999999999999999


Q ss_pred             CeeecccchhhhhccCCC---------------CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCC
Q 003199          675 PKVADFGIAKVLQARGGK---------------DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV  739 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~---------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~  739 (840)
                      ++|+|||+++........               ........||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus       152 vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF  231 (932)
T PRK13184        152 VVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPY  231 (932)
T ss_pred             EEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCC
Confidence            999999999866211100               00112346999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHhhhc
Q 003199          740 EDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-TMNEVVQLLAEA  810 (840)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-s~~evl~~L~~~  810 (840)
                      .......  .. ... .         ...+.......+....+.+++.+|++.||++|| +++++.+.|+..
T Consensus       232 ~~~~~~k--i~-~~~-~---------i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~  290 (932)
T PRK13184        232 RRKKGRK--IS-YRD-V---------ILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPH  290 (932)
T ss_pred             CCcchhh--hh-hhh-h---------ccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            7532111  00 000 0         000000011122345567788899999999996 567777777654

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=2.2e-36  Score=325.50  Aligned_cols=250  Identities=24%  Similarity=0.310  Sum_probs=194.3

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecC
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSL  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~  604 (840)
                      +|...+.||+|+||.||+|... +++.||||++......       .......+..|..++..+ .|++|+++++++.+.
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~   73 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVI-------QDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTM   73 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-------hhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecC
Confidence            3667889999999999999655 6789999998543211       112234566777888777 589999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++|+|.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+|||+++++.+||+|||+++
T Consensus        74 ~~~~lv~E~~~~g~L~~~~~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kL~DfG~~~  149 (323)
T cd05616          74 DRLYFVMEYVNGGDLMYQIQQVG-RFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCK  149 (323)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCEEecCCCHHHeEECCCCcEEEccCCCce
Confidence            99999999999999999987654 68999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....   .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  ....   ......     
T Consensus       150 ~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~--~~~~---~~i~~~-----  216 (323)
T cd05616         150 ENMW---DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELF---QSIMEH-----  216 (323)
T ss_pred             ecCC---CCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCH--HHHH---HHHHhC-----
Confidence            5322   12223456799999999999999999999999999999999999999975311  1110   000000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM-----NEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~-----~evl~~  806 (840)
                         ....+..   ...++.+++.+|++.||++|++.     .++.++
T Consensus       217 ---~~~~p~~---~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h  257 (323)
T cd05616         217 ---NVAYPKS---MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  257 (323)
T ss_pred             ---CCCCCCc---CCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcC
Confidence               0011111   23456778889999999999984     666554

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=4.9e-36  Score=318.78  Aligned_cols=257  Identities=27%  Similarity=0.355  Sum_probs=200.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|+..+.||+|+||.||+|...      ....||+|.+....         ..+....+.+|++++.++ +|+||++++
T Consensus        12 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~---------~~~~~~~~~~E~~~l~~l~~h~~i~~~~   82 (293)
T cd05053          12 DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDA---------TEKDLSDLVSEMEMMKMIGKHKNIINLL   82 (293)
T ss_pred             hHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCC---------CHHHHHHHHHHHHHHHhhcCCCCeeeEE
Confidence            46778889999999999999654      23679999874322         112345688999999999 799999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcC---------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKG---------------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIK  663 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk  663 (840)
                      +++......++||||+++|+|.++++..               ...+++..+..++.|++.|++|||+   .+|+|||||
T Consensus        83 ~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~dlk  159 (293)
T cd05053          83 GVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS---KKCIHRDLA  159 (293)
T ss_pred             EEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCccccccc
Confidence            9999999999999999999999998642               2468899999999999999999999   999999999


Q ss_pred             CCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCC
Q 003199          664 STNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD  742 (840)
Q Consensus       664 ~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~  742 (840)
                      |+||++++++.+||+|||+++.+.... .........++..|+|||+..+..++.++|||||||++||+++ |..||...
T Consensus       160 p~Nil~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  238 (293)
T cd05053         160 ARNVLVTEDHVMKIADFGLARDIHHID-YYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI  238 (293)
T ss_pred             eeeEEEcCCCeEEeCcccccccccccc-ceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCC
Confidence            999999999999999999998764321 1111222335678999999988899999999999999999998 99998642


Q ss_pred             CCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ..  ...   ....          ...............+.+++.+|++.||++|||+.|+++.|+++
T Consensus       239 ~~--~~~---~~~~----------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~  291 (293)
T cd05053         239 PV--EEL---FKLL----------KEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRM  291 (293)
T ss_pred             CH--HHH---HHHH----------HcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence            10  000   0000          00000011112345677899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=5.5e-36  Score=315.85  Aligned_cols=255  Identities=25%  Similarity=0.356  Sum_probs=198.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      .+|...++||+|+||.||+|...      ++..||+|.+....          ......+.+|+++++.++|+||+++++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~----------~~~~~~~~~e~~~l~~l~h~~i~~~~~   74 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS----------ESARQDFQREAELLTVLQHQHIVRFYG   74 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC----------HHHHHHHHHHHHHHhcCCCCCCceEEE
Confidence            45667889999999999998532      35688999874322          233567899999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC--------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL--------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKST  665 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~  665 (840)
                      ++......++||||+++++|.+++....              ..+++..+..++.|++.|++|||+   .+++||||||+
T Consensus        75 ~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~  151 (280)
T cd05092          75 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS---LHFVHRDLATR  151 (280)
T ss_pred             EEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH---CCeecccccHh
Confidence            9999999999999999999999987642              247899999999999999999999   99999999999


Q ss_pred             CEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCC
Q 003199          666 NILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG  744 (840)
Q Consensus       666 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~  744 (840)
                      ||++++++.+||+|||+++...... .........+++.|+|||++.+..++.++|||||||++|||++ |..||.....
T Consensus       152 nil~~~~~~~kL~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  230 (280)
T cd05092         152 NCLVGQGLVVKIGDFGMSRDIYSTD-YYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN  230 (280)
T ss_pred             hEEEcCCCCEEECCCCceeEcCCCc-eeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH
Confidence            9999999999999999987553211 1111223345678999999998899999999999999999998 9999864211


Q ss_pred             CCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                        ...   .......       ......   ......+.+++.+||+.||++||++.++.+.|++
T Consensus       231 --~~~---~~~~~~~-------~~~~~~---~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         231 --TEA---IECITQG-------RELERP---RTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             --HHH---HHHHHcC-------ccCCCC---CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence              111   0000000       000111   1223456788889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=6e-36  Score=315.16  Aligned_cols=255  Identities=25%  Similarity=0.327  Sum_probs=197.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      +.|...+.||+|++|.||+|...      .+..||+|.+....         .......+.+|+.++++++|+||+++++
T Consensus         6 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~---------~~~~~~~~~~e~~~l~~l~~~~i~~~~~   76 (277)
T cd05036           6 DSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESC---------SEQDESDFLMEALIMSKFNHQNIVRLIG   76 (277)
T ss_pred             HHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCC---------CHHHHHHHHHHHHHHHhCCCCCEeeEEE
Confidence            56788899999999999999664      35678999773221         1233456889999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      ++.+....++||||+++++|.+++....      ..++|..+..++.||+.|++|||+   ++++||||||+||+++.++
T Consensus        77 ~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~nil~~~~~  153 (277)
T cd05036          77 VSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKG  153 (277)
T ss_pred             EEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchheEEEeccC
Confidence            9999889999999999999999987643      258999999999999999999999   8999999999999998754


Q ss_pred             ---CCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcch
Q 003199          674 ---QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNI  749 (840)
Q Consensus       674 ---~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~  749 (840)
                         .+||+|||+++...... ..........+..|+|||++.+..++.++|||||||++|||++ |+.||......  ..
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~--~~  230 (277)
T cd05036         154 PGRVAKIADFGMARDIYRAS-YYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQ--EV  230 (277)
T ss_pred             CCcceEeccCccccccCCcc-ceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH--HH
Confidence               58999999998663211 1111122234568999999998899999999999999999997 99998753211  11


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                         ....... .      .....   ......+.+++.+|++.+|++||++.+++++|.
T Consensus       231 ---~~~~~~~-~------~~~~~---~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         231 ---MEFVTGG-G------RLDPP---KGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             ---HHHHHcC-C------cCCCC---CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence               1100000 0      00111   122356778888999999999999999999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-37  Score=330.95  Aligned_cols=253  Identities=27%  Similarity=0.369  Sum_probs=207.0

Q ss_pred             CccCeeeccCCcEEEEEEe-CCC----cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          529 TEKNKVGQGGSGTVYKIDL-NSG----EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~-~~~----~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ...++||+|+||+||+|.| ..|    -+||+|++....         ..+...++.+|+-+|.+++|||+++++|+|..
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t---------~~~~s~e~LdeAl~masldHpnl~RLLgvc~~  769 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFT---------SPKASIELLDEALRMASLDHPNLLRLLGVCML  769 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccC---------CchhhHHHHHHHHHHhcCCCchHHHHhhhccc
Confidence            3467899999999999855 334    468888874433         23456789999999999999999999999987


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .. ..||++||+.|+|.++++.....+.-...+.|..|||+||.|||.   +++|||||.++|||+.+-..+||+|||+|
T Consensus       770 s~-~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~---qrlVHrdLaaRNVLVksP~hvkitdfgla  845 (1177)
T KOG1025|consen  770 ST-LQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEE---QRLVHRDLAARNVLVKSPNHVKITDFGLA  845 (1177)
T ss_pred             ch-HHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh---cchhhhhhhhhheeecCCCeEEEEecchh
Confidence            76 789999999999999999888789999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +.....+ .........-.+.|||=|.+..+.|+.++|||||||.+||++| |..||++...                +.
T Consensus       846 ~ll~~d~-~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~----------------~e  908 (1177)
T KOG1025|consen  846 KLLAPDE-KEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPA----------------EE  908 (1177)
T ss_pred             hccCccc-ccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCH----------------HH
Confidence            9876532 2333333445678999999999999999999999999999999 9999976311                11


Q ss_pred             hhhhccccc-CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          763 IMEVLDKKL-SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       763 ~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      +.+.+.... -...+-...++..++.+||..|++.||+++++...+.++.
T Consensus       909 I~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~a  958 (1177)
T KOG1025|consen  909 IPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMA  958 (1177)
T ss_pred             hhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHh
Confidence            222222221 1223345677888999999999999999999999998654

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=5.1e-36  Score=314.04  Aligned_cols=255  Identities=28%  Similarity=0.328  Sum_probs=199.0

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|.. .+++.||+|++.....          .....+.+|+.++++++||||+++++++..
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~----------~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~   77 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG----------DDFSLIQQEIFMVKECKHCNIVAYFGSYLS   77 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc----------chHHHHHHHHHHHHhcCCCCeeeeeEEEEe
Confidence            35688889999999999999965 5789999999843321          123457789999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .+..++||||+++++|.++++... .+++..+..++.|++.|++|||+   .+|+|||++|+||+++.++.++|+|||++
T Consensus        78 ~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~  153 (267)
T cd06646          78 REKLWICMEYCGGGSLQDIYHVTG-PLSELQIAYVCRETLQGLAYLHS---KGKMHRDIKGANILLTDNGDVKLADFGVA  153 (267)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEECcCccc
Confidence            999999999999999999987654 68999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ......   ........|++.|+|||.+.   ...++.++|||||||++|||++|+.||........ ...+.      .
T Consensus       154 ~~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~-~~~~~------~  223 (267)
T cd06646         154 AKITAT---IAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRA-LFLMS------K  223 (267)
T ss_pred             eeeccc---ccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhh-heeee------c
Confidence            765321   11223456889999999874   34578899999999999999999999864321110 00000      0


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      .   ....... .........+.+++.+||+.+|++||+++++++++
T Consensus       224 ~---~~~~~~~-~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         224 S---NFQPPKL-KDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             C---CCCCCCC-ccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            0   0000001 01112335677888899999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=7.9e-36  Score=314.68  Aligned_cols=259  Identities=24%  Similarity=0.331  Sum_probs=200.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc----EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE----VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|+..+.||+|+||+||+|.+. +|+    .||+|++....         .....+.+.+|+.+++.+.|+||++++++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~---------~~~~~~~~~~e~~~l~~~~~~~i~~~~~~   77 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT---------SPKANKEILDEAYVMAGVGSPYVCRLLGI   77 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCC---------CHHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence            46777889999999999999653 454    48999874322         12335678899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +... ..++++||+++|+|.+++......+++..+..++.|++.||+|||+   ++++||||||+||++++++.+||+||
T Consensus        78 ~~~~-~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~iiH~dlkp~Nil~~~~~~~kL~df  153 (279)
T cd05109          78 CLTS-TVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEE---VRLVHRDLAARNVLVKSPNHVKITDF  153 (279)
T ss_pred             EcCC-CcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccccceEEEcCCCcEEECCC
Confidence            8754 5679999999999999998765578999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+++....... ........+++.|+|||...+..++.++|||||||++|||++ |..||.....  .....+..    .
T Consensus       154 G~~~~~~~~~~-~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~~~----~  226 (279)
T cd05109         154 GLARLLDIDET-EYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPA--REIPDLLE----K  226 (279)
T ss_pred             Cceeecccccc-eeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHH----C
Confidence            99987643111 111112234678999999988899999999999999999998 9999864311  11111110    0


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      .         ...+........+.+++.+||+.||++||++.++++.|+++...
T Consensus       227 ~---------~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         227 G---------ERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             C---------CcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence            0         00011112344677888899999999999999999999876443

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=4.7e-36  Score=319.94  Aligned_cols=260  Identities=26%  Similarity=0.349  Sum_probs=200.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc--EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE--VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||.||+|..+ +|.  .+|+|.+....         .......+.+|++++.++ +|+||+++++++
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~---------~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~   77 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA---------SKDDHRDFAGELEVLCKLGHHPNIINLLGAC   77 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccC---------CHHHHHHHHHHHHHHHHhcCCCCcceEEEEE
Confidence            46777889999999999999654 454  45777663221         123356788899999999 899999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCC
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTN  666 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~N  666 (840)
                      ......++||||+++|+|.+++....               ..+++.++..++.|++.|++|||+   ++++||||||+|
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dlkp~N  154 (303)
T cd05088          78 EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARN  154 (303)
T ss_pred             CCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHh---CCccccccchhe
Confidence            99999999999999999999997542               257899999999999999999999   999999999999


Q ss_pred             EEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCC
Q 003199          667 ILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGD  745 (840)
Q Consensus       667 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~  745 (840)
                      |++++++.+||+|||+++....    ........++..|+|||++.+..++.++|||||||++|||+| |..||..... 
T Consensus       155 ili~~~~~~kl~dfg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-  229 (303)
T cd05088         155 ILVGENYVAKIADFGLSRGQEV----YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-  229 (303)
T ss_pred             EEecCCCcEEeCccccCcccch----hhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh-
Confidence            9999999999999999863211    111122234668999999988889999999999999999998 9999864311 


Q ss_pred             CcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCC
Q 003199          746 NKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFE  816 (840)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~  816 (840)
                       ..   .... ....      .....   .......+.+++.+|++.+|++||++.++++.++++-..+..
T Consensus       230 -~~---~~~~-~~~~------~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~~~  286 (303)
T cd05088         230 -AE---LYEK-LPQG------YRLEK---PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT  286 (303)
T ss_pred             -HH---HHHH-HhcC------CcCCC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhhh
Confidence             10   1100 0000      00001   111234567888899999999999999999999887665553

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=4.1e-36  Score=323.59  Aligned_cols=251  Identities=22%  Similarity=0.294  Sum_probs=193.8

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||+||+|... +++.||+|++.....       ......+.+.+|+.++.++ .||||+++++++.+....++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~l   73 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELV-------HDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFL   73 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-------hhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEE
Confidence            36999999999999654 678999999854321       1123345678899999888 69999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|..++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~-  148 (327)
T cd05617          74 VIEYVNGGDLMFHMQRQR-KLPEEHARFYAAEICIALNFLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLG-  148 (327)
T ss_pred             EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEeCCCCEEEeccccceeccC-
Confidence            999999999999887654 68999999999999999999999   9999999999999999999999999999875321 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCC-cchhhhhhhhhccccchhhhcc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN-KNIIYWVSIKVDTKEGIMEVLD  768 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  768 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||....... .....+.......       ..
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~-------~~  219 (327)
T cd05617         149 --PGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILE-------KP  219 (327)
T ss_pred             --CCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHh-------CC
Confidence              1222345679999999999999999999999999999999999999996422111 1111111000000       00


Q ss_pred             cccCCCcHHHHHHHHHHHHHccCCCCCCCCC------HHHHHHH
Q 003199          769 KKLSGSFRDEMIQVLRIAIRCTSKSPATRPT------MNEVVQL  806 (840)
Q Consensus       769 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps------~~evl~~  806 (840)
                      ..++..   ....+.+++.+|++.||++||+      +.+++++
T Consensus       220 ~~~p~~---~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h  260 (327)
T cd05617         220 IRIPRF---LSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSH  260 (327)
T ss_pred             CCCCCC---CCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcC
Confidence            111111   2244567888999999999998      4577665

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.5e-35  Score=310.51  Aligned_cols=260  Identities=22%  Similarity=0.313  Sum_probs=206.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|... +|+.||+|.++.....       .....+.+.+|++++++++|+|++++++++...
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-------~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~   74 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMM-------DAKARQDCLKEIDLLKQLDHPNVIKYLASFIEN   74 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeeccccc-------chhhHHHHHHHHHHHHhCCCCCeeeeeeeeecC
Confidence            35778889999999999999665 8999999988533211       123356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      +..++||||+++++|.+++...   ...+++.++..++.+++.|++|||+   .+++||||+|+||+++.++.++++|||
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~nil~~~~~~~~l~d~~  151 (267)
T cd08224          75 NELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS---KRIMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             CeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecCCcChhhEEECCCCcEEEeccc
Confidence            9999999999999999988642   3458999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ++......   ........++..|+|||.+.+..++.++||||||+++|||++|+.||....   .........      
T Consensus       152 ~~~~~~~~---~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~~~~------  219 (267)
T cd08224         152 LGRFFSSK---TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK---MNLYSLCKK------  219 (267)
T ss_pred             eeeeccCC---CcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCC---ccHHHHHhh------
Confidence            98765321   112234568889999999988889999999999999999999999986432   111111110      


Q ss_pred             chhhhcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          762 GIMEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       762 ~~~~~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                          .......+.. ......+.+++.+|+..+|++||++.++++.|+++.
T Consensus       220 ----~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         220 ----IEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             ----hhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence                0001111111 133456778888999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.6e-36  Score=333.92  Aligned_cols=256  Identities=22%  Similarity=0.306  Sum_probs=194.7

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|+..+.||+|+||.||+|.. .+++.||||++.....       ........+.+|++++++++|+||+++++.+.+.+
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~-------~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~   74 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADV-------LMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKD   74 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHH-------HhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCC
Confidence            477889999999999999955 4689999999843221       11223466889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.+.. .+++..+..++.||+.||+|||+   ++|+||||||+||+++.++.+||+|||+|..
T Consensus        75 ~~~lv~E~~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~  150 (376)
T cd05598          75 NLYFVMDYIPGGDMMSLLIRLG-IFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (376)
T ss_pred             EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHEEECCCCCEEEEeCCCCcc
Confidence            9999999999999999998764 68889999999999999999999   9999999999999999999999999999753


Q ss_pred             hhccCC----------------------------------------CCcceecccccccccCccccccCCCCccccchhH
Q 003199          686 LQARGG----------------------------------------KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSF  725 (840)
Q Consensus       686 ~~~~~~----------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~sl  725 (840)
                      +.....                                        .........||+.|+|||++.+..++.++|||||
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  230 (376)
T cd05598         151 FRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV  230 (376)
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeec
Confidence            310000                                        0001123479999999999999899999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC---CHHH
Q 003199          726 GVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP---TMNE  802 (840)
Q Consensus       726 G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp---s~~e  802 (840)
                      ||++|||++|+.||......     .+.........    ...  .. ........+.+++.+|+ .+|.+|+   ++.+
T Consensus       231 Gvilyell~G~~Pf~~~~~~-----~~~~~i~~~~~----~~~--~~-~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~e  297 (376)
T cd05598         231 GVILYEMLVGQPPFLADTPA-----ETQLKVINWET----TLH--IP-SQAKLSREASDLILRLC-CGAEDRLGKNGADE  297 (376)
T ss_pred             cceeeehhhCCCCCCCCCHH-----HHHHHHhccCc----ccc--CC-CCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHH
Confidence            99999999999999753211     00000000000    000  00 00112234455556665 4999999   8999


Q ss_pred             HHHH
Q 003199          803 VVQL  806 (840)
Q Consensus       803 vl~~  806 (840)
                      ++++
T Consensus       298 ll~h  301 (376)
T cd05598         298 IKAH  301 (376)
T ss_pred             HhCC
Confidence            9988

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=4.6e-36  Score=328.04  Aligned_cols=262  Identities=25%  Similarity=0.315  Sum_probs=197.0

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.++|...+.||+|+||.||+|.. .+|..||||++.....        .......+.+|+.+++.++||||+++++++
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~niv~~~~~~   89 (359)
T cd07876          18 TVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQ--------NQTHAKRAYRELVLLKCVNHKNIISLLNVF   89 (359)
T ss_pred             hhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEeccccc--------chhHHHHHHHHHHHHHhCCCCCEeeeeeee
Confidence            4568899999999999999999954 5789999999854321        122345677899999999999999999988


Q ss_pred             ecCc------cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          602 SSLY------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       602 ~~~~------~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      ....      ..++||||+++ ++.+.+..   .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+
T Consensus        90 ~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~---~~ivHrDlkp~NIl~~~~~~~  162 (359)
T cd07876          90 TPQKSLEEFQDVYLVMELMDA-NLCQVIHM---ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTL  162 (359)
T ss_pred             ccCCCccccceeEEEEeCCCc-CHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCE
Confidence            5443      46899999964 66666653   47889999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|||+++....    ........||+.|+|||.+.+..++.++||||+||++|||++|+.||.....    ...|...
T Consensus       163 kl~Dfg~a~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~----~~~~~~~  234 (359)
T cd07876         163 KILDFGLARTACT----NFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDH----IDQWNKV  234 (359)
T ss_pred             EEecCCCcccccc----CccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH----HHHHHHH
Confidence            9999999975422    2223345789999999999999999999999999999999999999975321    1111110


Q ss_pred             hhcccc-----------chhhhcc--cccCC-----------------CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 003199          756 KVDTKE-----------GIMEVLD--KKLSG-----------------SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ  805 (840)
Q Consensus       756 ~~~~~~-----------~~~~~~~--~~~~~-----------------~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~  805 (840)
                      ......           .......  +...+                 ........+.+++.+|++.||++|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  314 (359)
T cd07876         235 IEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALR  314 (359)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhc
Confidence            000000           0000000  00000                 00011345778899999999999999999999


Q ss_pred             Hh
Q 003199          806 LL  807 (840)
Q Consensus       806 ~L  807 (840)
                      +-
T Consensus       315 hp  316 (359)
T cd07876         315 HP  316 (359)
T ss_pred             Cc
Confidence            74

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=9.1e-36  Score=312.46  Aligned_cols=258  Identities=25%  Similarity=0.385  Sum_probs=201.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CC---cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SG---EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~---~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ..|...+.||+|+||.||+|... ++   ..||||++....         .......|..|+.+++.++||||+++++++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~   74 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY---------TEKQRRDFLSEASIMGQFDHPNIIHLEGVV   74 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC---------CHHHHHHHHHHHHHHHhCCCcCcceEEEEE
Confidence            45677889999999999999664 33   369999884321         123356789999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+....++||||+++++|.+++......+++.++..++.|++.|++|||+   .+++||||||+||+++.++.++++|||
T Consensus        75 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~---~g~~H~dl~p~nili~~~~~~kl~dfg  151 (269)
T cd05065          75 TKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFG  151 (269)
T ss_pred             CCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccChheEEEcCCCcEEECCCc
Confidence            99999999999999999999998765578999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceeccc--ccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhc
Q 003199          682 IAKVLQARGGKDSTTTVIA--GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~--gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      ++.................  .+..|+|||++.+..++.++|||||||++|||++ |..||....  ......+..    
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~--~~~~~~~i~----  225 (269)
T cd05065         152 LSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS--NQDVINAIE----  225 (269)
T ss_pred             cccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCC--HHHHHHHHH----
Confidence            9876543211111111111  2457999999998899999999999999999887 999986431  111111110    


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ..      ..   .+...+.+..+.+++.+||+.+|++||++.+++..|+++
T Consensus       226 ~~------~~---~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         226 QD------YR---LPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             cC------Cc---CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            00      00   011122344567888899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=5.7e-36  Score=318.56  Aligned_cols=258  Identities=27%  Similarity=0.341  Sum_probs=198.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc--EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE--VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||.||+|..+ ++.  .+++|.++...         .....+.+.+|+++++++ +||||+++++++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~---------~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~   72 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFA---------SENDHRDFAGELEVLCKLGHHPNIINLLGAC   72 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccC---------CHHHHHHHHHHHHHHHhhcCCCchhheEEEE
Confidence            45777889999999999999665 343  47888774321         122346788999999999 799999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCC
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTN  666 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~N  666 (840)
                      ......++|+||+++|+|.+++....               ..+++..+..++.|++.|++|||+   ++|+||||||+|
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~N  149 (297)
T cd05089          73 ENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSE---KQFIHRDLAARN  149 (297)
T ss_pred             ccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCcCCcce
Confidence            99999999999999999999997532               247889999999999999999999   999999999999


Q ss_pred             EEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCC
Q 003199          667 ILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGD  745 (840)
Q Consensus       667 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~  745 (840)
                      |++++++.+||+|||++.....    .........+..|+|||+..+..++.++|||||||++|||++ |..||..... 
T Consensus       150 ill~~~~~~kl~dfg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~-  224 (297)
T cd05089         150 VLVGENLASKIADFGLSRGEEV----YVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC-  224 (297)
T ss_pred             EEECCCCeEEECCcCCCccccc----eeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH-
Confidence            9999999999999999864211    111112233557999999988889999999999999999997 9999965311 


Q ss_pred             CcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCC
Q 003199          746 NKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR  814 (840)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~  814 (840)
                       .   ........       .......   ......+.+++.+|++.+|.+||++.++++.|+++...+
T Consensus       225 -~---~~~~~~~~-------~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~  279 (297)
T cd05089         225 -A---ELYEKLPQ-------GYRMEKP---RNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEAR  279 (297)
T ss_pred             -H---HHHHHHhc-------CCCCCCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence             0   01100000       0001111   123345678888999999999999999999998766544

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-35  Score=309.58  Aligned_cols=251  Identities=28%  Similarity=0.370  Sum_probs=195.3

Q ss_pred             CeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccc
Q 003199          532 NKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  607 (840)
                      ++||+|+||.||+|.+..    +..||+|.+.....         ....+.+.+|+.+++.+.|+|++++++++.. ...
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~   70 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHI---------AAGKKEFLREASVMAQLDHPCIVRLIGVCKG-EPL   70 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccc---------hHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC-Cce
Confidence            469999999999995532    26899998843321         1335678899999999999999999998764 467


Q ss_pred             eEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhh
Q 003199          608 LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ  687 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~  687 (840)
                      ++||||+++|+|.+++.... .+++..+..++.|++.|++|||.   .+++||||||+||+++.++.+||+|||+++...
T Consensus        71 ~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~nili~~~~~~kl~df~~~~~~~  146 (257)
T cd05060          71 MLVMELAPLGPLLKYLKKRR-EIPVSDLKELAHQVAMGMAYLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSRALG  146 (257)
T ss_pred             EEEEEeCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHhh---cCeeccCcccceEEEcCCCcEEeccccccceee
Confidence            99999999999999998765 68999999999999999999999   899999999999999999999999999998764


Q ss_pred             ccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          688 ARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       688 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      .............++..|+|||...+..++.++||||||+++|||++ |+.||....+  .....+..   . ..     
T Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~--~~~~~~~~---~-~~-----  215 (257)
T cd05060         147 AGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG--AEVIAMLE---S-GE-----  215 (257)
T ss_pred             cCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHH---c-CC-----
Confidence            32211111122234568999999988899999999999999999998 9999865311  11111110   0 00     


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                          ...........+.+++.+|+..+|++||++.++.+.|+++.
T Consensus       216 ----~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         216 ----RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             ----cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence                00111122356778888999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.8e-36  Score=311.14  Aligned_cols=253  Identities=30%  Similarity=0.448  Sum_probs=202.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|..+++..||||.+.....           ..+.+.+|+.++++++|+|++++++++....
T Consensus         6 ~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~-----------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   74 (261)
T cd05034           6 ESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM-----------SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEE   74 (261)
T ss_pred             hheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc-----------CHHHHHHHHHHHhhCCCCCEeeeeeeeecCC
Confidence            56788899999999999999888888999998853221           1356889999999999999999999999888


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++.... ..+++.++..++.+++.|++|||+   .+++|+||||+||++++++.++++|||.+.
T Consensus        75 ~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~---~~i~h~di~p~nili~~~~~~~l~d~g~~~  151 (261)
T cd05034          75 PIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLES---RNYIHRDLAARNILVGENLVCKIADFGLAR  151 (261)
T ss_pred             ceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcchheEEEcCCCCEEECccccce
Confidence            9999999999999999997653 468999999999999999999999   899999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  .........++..|+|||.+.+..++.++||||+|+++||+++ |+.||.+...  .......  . .     
T Consensus       152 ~~~~~--~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~--~~~~~~~--~-~-----  219 (261)
T cd05034         152 LIEDD--EYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN--REVLEQV--E-R-----  219 (261)
T ss_pred             eccch--hhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHH--H-c-----
Confidence            65421  1111122234568999999998889999999999999999999 9999865311  1111100  0 0     


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                        .......   ......+.+++.+|++.+|++||+++++.+.|+.
T Consensus       220 --~~~~~~~---~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         220 --GYRMPRP---PNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             --CCCCCCC---CCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence              0000011   1123467788889999999999999999998875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=2.2e-36  Score=337.29  Aligned_cols=259  Identities=24%  Similarity=0.326  Sum_probs=188.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ..|...+.||+|+||.||+|.. .+++.||||++....              ....+|+.+++.++||||+++++++...
T Consensus        66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~--------------~~~~~Ei~il~~l~h~niv~l~~~~~~~  131 (440)
T PTZ00036         66 KSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP--------------QYKNRELLIMKNLNHINIIFLKDYYYTE  131 (440)
T ss_pred             CeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc--------------chHHHHHHHHHhcCCCCCcceeeeEeec
Confidence            4688899999999999999965 468999999873221              1234699999999999999998876331


Q ss_pred             --------ccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          605 --------YCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       605 --------~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                              ...++||||++ +++.+++..   ....+++..+..++.|++.||+|||+   ++|+||||||+|||++.++
T Consensus       132 ~~~~~~~~~~l~lvmE~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~---~~IiHrDLKp~NILl~~~~  207 (440)
T PTZ00036        132 CFKKNEKNIFLNVVMEFIP-QTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS---KFICHRDLKPQNLLIDPNT  207 (440)
T ss_pred             ccccCCCceEEEEEEecCC-ccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCcCHHHEEEcCCC
Confidence                    23568999997 477766643   23468999999999999999999999   9999999999999999665


Q ss_pred             -CCeeecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhh
Q 003199          674 -QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       674 -~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~  751 (840)
                       .+||+|||+|+.+...    .......||+.|+|||++.+. .++.++|||||||++|||++|.+||.+.... ..+..
T Consensus       208 ~~vkL~DFGla~~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~-~~~~~  282 (440)
T PTZ00036        208 HTLKLCDFGSAKNLLAG----QRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSV-DQLVR  282 (440)
T ss_pred             CceeeeccccchhccCC----CCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHH
Confidence             6999999999876431    122345689999999988654 6899999999999999999999999753211 11111


Q ss_pred             hhhhhhc-cccchhh----hcccccC----CCcH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          752 WVSIKVD-TKEGIME----VLDKKLS----GSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       752 ~~~~~~~-~~~~~~~----~~~~~~~----~~~~-----~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ..+.... ..+....    ..+..++    ....     ....++.+++.+||+.||.+|||+.|++++=
T Consensus       283 i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp  352 (440)
T PTZ00036        283 IIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADP  352 (440)
T ss_pred             HHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCCh
Confidence            1110000 0000000    0000000    0010     1234678899999999999999999999773

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=1e-35  Score=311.84  Aligned_cols=260  Identities=20%  Similarity=0.293  Sum_probs=204.9

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|++|.||+|.. .+|+.||||.+....       .......+.+.+|+.+++.+.|+||+++++++.+.+
T Consensus         3 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~-------~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   75 (267)
T cd08229           3 NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFD-------LMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN   75 (267)
T ss_pred             hhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehh-------hhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCC
Confidence            566778899999999999964 579999999874322       112334567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          606 CNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ..++||||+++++|.+++..   ....+++..+..++.|++.|++|||+   .+++|+||||+||+++.++.++++|||+
T Consensus        76 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~  152 (267)
T cd08229          76 ELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGL  152 (267)
T ss_pred             eEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEECcchh
Confidence            99999999999999998864   23468999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +......   ........|+..|+|||++.+..++.++||||||+++|||++|..||......   ...+.+..      
T Consensus       153 ~~~~~~~---~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~------  220 (267)
T cd08229         153 GRFFSSK---TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKI------  220 (267)
T ss_pred             hhccccC---CcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccch---HHHHhhhh------
Confidence            8765331   11223456889999999998888999999999999999999999998643111   11111100      


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                       .....+...  .......+.+++.+||..||.+|||+.+|++.++++.
T Consensus       221 -~~~~~~~~~--~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         221 -EQCDYPPLP--SDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             -hcCCCCCCC--cccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence             000001111  1123456778888999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=3e-36  Score=324.67  Aligned_cols=242  Identities=25%  Similarity=0.298  Sum_probs=186.3

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHH-HHHhccCCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV-ETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~-~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||+||+|... +++.||+|++......       .......+..|. .+++.++|+||+++++++...+..++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~l   73 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAIL-------KKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF   73 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHH-------hhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEE
Confidence            36999999999999654 6789999998532211       111223344444 45678899999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|.+++.... .+.+..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~L~~lH~---~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~-  148 (325)
T cd05602          74 VLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE-  148 (325)
T ss_pred             EEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEEccCCCCccccc-
Confidence            999999999999997754 57888999999999999999999   9999999999999999999999999999875422 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                        .........||+.|+|||++.+..++.++||||+||++|||++|+.||.....     ..........        ..
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~~~~~i~~~--------~~  213 (325)
T cd05602         149 --HNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-----AEMYDNILNK--------PL  213 (325)
T ss_pred             --CCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH-----HHHHHHHHhC--------Cc
Confidence              12223456799999999999999999999999999999999999999975311     1111100000        00


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV  803 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ev  803 (840)
                      ...+.   ....+.+++.+|++.||.+||++.+.
T Consensus       214 ~~~~~---~~~~~~~li~~~l~~~p~~R~~~~~~  244 (325)
T cd05602         214 QLKPN---ITNSARHLLEGLLQKDRTKRLGAKDD  244 (325)
T ss_pred             CCCCC---CCHHHHHHHHHHcccCHHHCCCCCCC
Confidence            11122   23455677789999999999987743

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=7.7e-36  Score=327.22  Aligned_cols=258  Identities=24%  Similarity=0.357  Sum_probs=199.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|.+.      .+..||||++.....         ....+.+.+|++++.++. ||||++++
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---------~~~~~~~~~E~~~l~~l~~H~niv~~~  107 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR---------SSEKQALMSELKIMSHLGPHLNIVNLL  107 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC---------hhHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            45677889999999999999753      346899999854321         122346889999999997 99999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC---------------------------------------------------
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------------------------------------------  627 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------------------------------------------  627 (840)
                      +++......++||||+++|+|.+++++..                                                   
T Consensus       108 ~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (401)
T cd05107         108 GACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESA  187 (401)
T ss_pred             EEEccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCcccc
Confidence            99999999999999999999999986531                                                   


Q ss_pred             ----------------------------------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          628 ----------------------------------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       628 ----------------------------------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                                                                    ..+++..+..++.|++.||+|||+   .+++|||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrd  264 (401)
T cd05107         188 DYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLAS---KNCVHRD  264 (401)
T ss_pred             CccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcCccc
Confidence                                                          135777889999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+||++++++.+||+|||+++...... .........++..|+|||.+.+..++.++||||||+++|||++ |+.||.
T Consensus       265 lkp~NiLl~~~~~~kL~DfGla~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~  343 (401)
T cd05107         265 LAARNVLICEGKLVKICDFGLARDIMRDS-NYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYP  343 (401)
T ss_pred             CCcceEEEeCCCEEEEEecCcceeccccc-ccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999997653211 1111223456789999999988889999999999999999998 899986


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .....  .. .+ .. .....      ....+   ......+.+++.+||..+|.+||+++|+++.|+++
T Consensus       344 ~~~~~--~~-~~-~~-~~~~~------~~~~p---~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~  399 (401)
T cd05107         344 ELPMN--EQ-FY-NA-IKRGY------RMAKP---AHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL  399 (401)
T ss_pred             CCCch--HH-HH-HH-HHcCC------CCCCC---CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            43110  00 00 00 00000      00011   12235677788899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=1.2e-35  Score=309.49  Aligned_cols=251  Identities=27%  Similarity=0.417  Sum_probs=198.1

Q ss_pred             CeeeccCCcEEEEEEeCC--C--cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccc
Q 003199          532 NKVGQGGSGTVYKIDLNS--G--EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~--~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  607 (840)
                      +.||+|++|.||+|.+.+  +  ..||||.+.....         ....+.+.+|+.++++++|+||+++++.+.+ ...
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~   70 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKL---------SDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPL   70 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCccc---------HHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeE
Confidence            468999999999996643  3  3699998844331         1446788999999999999999999999988 888


Q ss_pred             eEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          608 LLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      ++|+||+++++|.+++.... ..++|..++.++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++.+
T Consensus        71 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~  147 (257)
T cd05040          71 MMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRAL  147 (257)
T ss_pred             EEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHh---CCccccccCcccEEEecCCEEEeccccccccc
Confidence            99999999999999998754 468999999999999999999999   99999999999999999999999999999876


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ..............++..|+|||++.+..++.++|||||||++|||++ |+.||.....  .......   ...      
T Consensus       148 ~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~~---~~~------  216 (257)
T cd05040         148 PQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSG--SQILKKI---DKE------  216 (257)
T ss_pred             cccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHH---Hhc------
Confidence            442222222234557789999999998899999999999999999999 9999864311  1111100   000      


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                         .............+.+++.+|++.+|++||++.++++.|.+
T Consensus       217 ---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~  257 (257)
T cd05040         217 ---GERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLPE  257 (257)
T ss_pred             ---CCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhcC
Confidence               00000111234567788889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-35  Score=313.11  Aligned_cols=256  Identities=26%  Similarity=0.339  Sum_probs=201.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|+..+.||+|+||.||+|...      ++..||+|.+....         .......+.+|+.+++.++|+||+++++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~---------~~~~~~~~~~e~~~l~~~~~~~i~~~~~   76 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA---------SMRERIEFLNEASVMKEFNCHHVVRLLG   76 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc---------CHHHHHHHHHHHHHHHhCCCCceeEEEE
Confidence            56788899999999999998654      24689999874221         1223456889999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC---------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL---------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD  670 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~  670 (840)
                      ++......++||||+++|+|.+++....         ..++|..+..++.|++.||.|||+   .+++||||||+||+++
T Consensus        77 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~di~p~nill~  153 (277)
T cd05032          77 VVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAA---KKFVHRDLAARNCMVA  153 (277)
T ss_pred             EEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccChheEEEc
Confidence            9999999999999999999999986432         246889999999999999999999   9999999999999999


Q ss_pred             CCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcch
Q 003199          671 VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNI  749 (840)
Q Consensus       671 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~  749 (840)
                      +++.+||+|||+++....... ........++..|+|||.+.+..++.++|||||||++||+++ |..||.+..  ....
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~--~~~~  230 (277)
T cd05032         154 EDLTVKIGDFGMTRDIYETDY-YRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS--NEEV  230 (277)
T ss_pred             CCCCEEECCcccchhhccCcc-cccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC--HHHH
Confidence            999999999999987643211 112233456789999999988889999999999999999998 999986421  1111


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      ..+..   . ..      ....+..   ....+.+++.+||+.+|++|||+.++++.|++
T Consensus       231 ~~~~~---~-~~------~~~~~~~---~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         231 LKFVI---D-GG------HLDLPEN---CPDKLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             HHHHh---c-CC------CCCCCCC---CCHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence            11110   0 00      0011111   24567788889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1e-35  Score=309.63  Aligned_cols=252  Identities=25%  Similarity=0.371  Sum_probs=199.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .+|+..+.||+|+||.||+|.+.+++.+|+|.+.....           ....+.+|+++++++.|||++++++++....
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~-----------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM-----------SEEDFIEEAQVMMKLSHPKLVQLYGVCTERS   72 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC-----------CHHHHHHHHHHHHhCCCCCeeeEEEEEccCC
Confidence            35677889999999999999877788999998743221           1345788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++......++++.+..++.+++.|++|||+   .+++||||||+||+++.++.++|+|||.+..
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  149 (256)
T cd05112          73 PICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLES---SNVIHRDLAARNCLVGENQVVKVSDFGMTRF  149 (256)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccccceEEEcCCCeEEECCCcceee
Confidence            9999999999999999998765568999999999999999999999   8999999999999999999999999999875


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....  .........++.+|+|||++.+..++.++||||||+++|||++ |+.||.....  ...   .....   .   
T Consensus       150 ~~~~--~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~--~~~---~~~~~---~---  216 (256)
T cd05112         150 VLDD--QYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN--SEV---VETIN---A---  216 (256)
T ss_pred             cccC--cccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH--HHH---HHHHh---C---
Confidence            5321  1111122335678999999988889999999999999999998 9999864311  111   10000   0   


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                       .........   ....+.+++.+||+.+|++||++.+++++|.
T Consensus       217 -~~~~~~~~~---~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         217 -GFRLYKPRL---ASQSVYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             -CCCCCCCCC---CCHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence             000000111   2356778899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=1e-35  Score=315.37  Aligned_cols=256  Identities=26%  Similarity=0.377  Sum_probs=200.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      .+|+..+.||+|+||.||+|...      ++..||+|++....         .......+.+|+.+++++.|||++++++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~---------~~~~~~~~~~ei~~l~~l~h~~iv~~~~   75 (288)
T cd05050           5 NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---------SADMQADFQREAALMAEFDHPNIVKLLG   75 (288)
T ss_pred             HhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCc---------CHHHHHHHHHHHHHHHhcCCCchheEEE
Confidence            46778889999999999999653      46789999884322         1233467889999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC---------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeE
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL---------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPII  658 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~iv  658 (840)
                      ++......++||||+++|+|.+++....                     ..+++..+..++.|++.||+|||+   .+++
T Consensus        76 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~---~~i~  152 (288)
T cd05050          76 VCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE---RKFV  152 (288)
T ss_pred             EEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCee
Confidence            9999999999999999999999987431                     247888999999999999999999   9999


Q ss_pred             ecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCC
Q 003199          659 HRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRK  737 (840)
Q Consensus       659 H~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~  737 (840)
                      ||||||+||++++++.++|+|||.+..+..... ........++..|+|||.+.+..++.++|||||||++|||++ |..
T Consensus       153 H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~  231 (288)
T cd05050         153 HRDLATRNCLVGENMVVKIADFGLSRNIYSADY-YKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQ  231 (288)
T ss_pred             cccccHhheEecCCCceEECccccceecccCcc-ccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999875532111 111222345678999999988899999999999999999998 888


Q ss_pred             CCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       738 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      ||.+...     .....          ...+............++.+++.+|++.||++|||+.|+++.|++
T Consensus       232 p~~~~~~-----~~~~~----------~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         232 PYYGMAH-----EEVIY----------YVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             CCCCCCH-----HHHHH----------HHhcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence            8854211     01111          111111111111234567788999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=3.6e-36  Score=323.60  Aligned_cols=240  Identities=26%  Similarity=0.331  Sum_probs=185.6

Q ss_pred             CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHH-HHHhccCCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV-ETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~-~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||.||+|... +|+.||+|++......       .......+..|. .+++.++||||+++++++.+.+..++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~l   73 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTIL-------KKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYF   73 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHH-------HhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEE
Confidence            36999999999999664 6899999998433211       112233444554 46788999999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|..++.... .+++..+..++.||+.||+|||+   .+|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~-  148 (321)
T cd05603          74 VLDYVNGGELFFHLQRER-CFLEPRARFYAAEVASAIGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVE-  148 (321)
T ss_pred             EEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEccCCCCccCCC-
Confidence            999999999998887653 68889999999999999999999   9999999999999999999999999999875322 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||....     ...........        ..
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----~~~~~~~i~~~--------~~  213 (321)
T cd05603         149 --PEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD-----VSQMYDNILHK--------PL  213 (321)
T ss_pred             --CCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC-----HHHHHHHHhcC--------CC
Confidence              1122344578999999999998899999999999999999999999997531     11111100000        00


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN  801 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~  801 (840)
                      .+++.   ....+.+++.+|++.||.+||++.
T Consensus       214 ~~~~~---~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         214 QLPGG---KTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CCCCC---CCHHHHHHHHHHccCCHhhcCCCC
Confidence            11112   234566788899999999999763

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=8.2e-36  Score=320.76  Aligned_cols=196  Identities=26%  Similarity=0.400  Sum_probs=159.3

Q ss_pred             cCeeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec--Cc
Q 003199          531 KNKVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS--LY  605 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~  605 (840)
                      .++||+|+||+||+|...   +++.||+|.+.....            ...+.+|++++++++||||+++++++..  ..
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~------------~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   73 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI------------SMSACREIALLRELKHPNVISLQKVFLSHADR   73 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC------------cHHHHHHHHHHHhcCCCCCcceeeeEecCCCc
Confidence            468999999999999754   467899998843221            2346789999999999999999998854  45


Q ss_pred             cceEEEeecCCCChHHHhhcC--------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE----cCCC
Q 003199          606 CNLLVYEYMPNGNLWDALHKG--------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL----DVNY  673 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill----~~~~  673 (840)
                      ..++||||+. ++|.+++...        ...+++..+..++.|++.||+|||+   .+|+||||||+|||+    +.++
T Consensus        74 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivHrDlkp~Nil~~~~~~~~~  149 (317)
T cd07868          74 KVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERG  149 (317)
T ss_pred             EEEEEEeccC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEecCCCCcC
Confidence            6789999995 5888877532        1258899999999999999999999   999999999999999    4567


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCC
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDD  742 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~  742 (840)
                      .+||+|||+++................||+.|+|||++.+ ..++.++||||+||++|||++|++||...
T Consensus       150 ~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         150 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             cEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCC
Confidence            8999999999876432222223345678999999999876 45899999999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=4.5e-36  Score=321.34  Aligned_cols=264  Identities=21%  Similarity=0.298  Sum_probs=197.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|..+ +++.||+|++......         .....+.+|++++++++||||+++++++...
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~---------~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   76 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE---------GAPCTAIREVSLLKDLKHANIVTLHDIVHTD   76 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccC---------CcchhHHHHHHHHHhCCCCCcceEEEEEeeC
Confidence            46788899999999999999654 6889999998543211         1123466899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||++ +++.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus        77 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  152 (309)
T cd07872          77 KSLTLVFEYLD-KDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHR---RKVLHRDLKPQNLLINERGELKLADFGLAR  152 (309)
T ss_pred             CeEEEEEeCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECccccce
Confidence            99999999997 48888887665568999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc-----------hhhh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN-----------IIYW  752 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~-----------~~~~  752 (840)
                      .....   ........+++.|+|||.+.+ ..++.++||||+||++|||++|+.||......+..           ...|
T Consensus       153 ~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~  229 (309)
T cd07872         153 AKSVP---TKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETW  229 (309)
T ss_pred             ecCCC---ccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHH
Confidence            54321   122234467899999998765 46889999999999999999999999753211000           0001


Q ss_pred             hhhhhccccchhhhcccccC-----CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          753 VSIKVDTKEGIMEVLDKKLS-----GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ....  ..........+...     ........++.+++.+|++.||.+|||+.|++++-
T Consensus       230 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~  287 (309)
T cd07872         230 PGIS--SNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHA  287 (309)
T ss_pred             hhhc--chhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcCh
Confidence            0000  00000000000000     00112234567888999999999999999999863

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.5e-35  Score=315.81  Aligned_cols=257  Identities=24%  Similarity=0.363  Sum_probs=201.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|..      .++..||||++.....         ....+.+.+|+.+++++ +|+||++++
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~~h~~iv~~~  105 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH---------SSEREALMSELKIMSHLGNHENIVNLL  105 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC---------hHHHHHHHHHHHHHHhccCCCCcceEE
Confidence            5688889999999999999853      2345799998743221         22346788999999999 799999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      +++......++||||+++|+|.+++.... ..+++.++..++.|++.||+|||+   ++++|+||||+||+++.++.+++
T Consensus       106 ~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l  182 (302)
T cd05055         106 GACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNVLLTHGKIVKI  182 (302)
T ss_pred             EEEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeehhhhccceEEEcCCCeEEE
Confidence            99999999999999999999999997643 238999999999999999999999   89999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      +|||+++...... .........++..|+|||.+.+..++.++||||+||++|||++ |..||....... .....    
T Consensus       183 ~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~-~~~~~----  256 (302)
T cd05055         183 CDFGLARDIMNDS-NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDS-KFYKL----  256 (302)
T ss_pred             CCCcccccccCCC-ceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchH-HHHHH----
Confidence            9999997653321 1111223346778999999998899999999999999999998 999987532111 00000    


Q ss_pred             hccccchhhhcccccC-CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          757 VDTKEGIMEVLDKKLS-GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                                ...... ........++.+++.+|+..+|++||++.|+++.|+++
T Consensus       257 ----------~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         257 ----------IKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             ----------HHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence                      000000 00111234677888899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=1.3e-35  Score=316.99  Aligned_cols=261  Identities=25%  Similarity=0.318  Sum_probs=201.8

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC--------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcc
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN--------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIV  595 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv  595 (840)
                      .++|...+.||+|+||.||+|...        ++..||+|.+....         .....+.+.+|+.+++.+ +||||+
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~---------~~~~~~~~~~E~~~l~~l~~h~~i~   84 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDA---------TEKDLSDLVSEMEMMKMIGKHKNII   84 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccccc---------chHHHHHHHHHHHHHHhhccCCCch
Confidence            356778899999999999998531        34579999874321         122346788999999999 899999


Q ss_pred             eeeeEEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEec
Q 003199          596 KLYCYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHR  660 (840)
Q Consensus       596 ~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~  660 (840)
                      ++++++......++||||+++|+|.+++....               ..+++.++..++.|++.||+|||+   ++++||
T Consensus        85 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~givH~  161 (304)
T cd05101          85 NLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS---QKCIHR  161 (304)
T ss_pred             heeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHH---CCeeec
Confidence            99999999999999999999999999987531               247888999999999999999999   999999


Q ss_pred             CCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCC
Q 003199          661 DIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPV  739 (840)
Q Consensus       661 Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~  739 (840)
                      ||||+||++++++.+||+|||.++....... ........+++.|+|||++.+..++.++||||||+++|||++ |..||
T Consensus       162 dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~  240 (304)
T cd05101         162 DLAARNVLVTENNVMKIADFGLARDVNNIDY-YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPY  240 (304)
T ss_pred             ccccceEEEcCCCcEEECCCccceecccccc-cccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999986643211 112223345678999999988889999999999999999998 78887


Q ss_pred             CCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          740 EDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      ....     ...+.... ...         ............+.+++.+||+.+|.+||++.|+++.|+++...
T Consensus       241 ~~~~-----~~~~~~~~-~~~---------~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         241 PGIP-----VEELFKLL-KEG---------HRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             ccCC-----HHHHHHHH-HcC---------CcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence            5421     11111110 000         00001112345677788899999999999999999999876443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-35  Score=315.35  Aligned_cols=263  Identities=25%  Similarity=0.324  Sum_probs=197.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC---------------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS---------------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR  590 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~---------------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  590 (840)
                      .+|...+.||+|+||.||++....               ...||+|.+.....         ......+.+|++++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~ei~~l~~l~   75 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT---------KTARNDFLKEIKIMSRLK   75 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC---------HHHHHHHHHHHHHHHhCC
Confidence            467888899999999999985532               23589998743211         223456889999999999


Q ss_pred             CCCcceeeeEEecCccceEEEeecCCCChHHHhhcCC-----------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEe
Q 003199          591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGL-----------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIH  659 (840)
Q Consensus       591 h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-----------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH  659 (840)
                      |+|++++++++......++||||+++++|.+++....           ..+++..+..++.|++.|++|||+   .+++|
T Consensus        76 h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H  152 (295)
T cd05097          76 NPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLAS---LNFVH  152 (295)
T ss_pred             CCCcCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHh---cCeec
Confidence            9999999999999999999999999999999986532           246889999999999999999999   99999


Q ss_pred             cCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh--CCC
Q 003199          660 RDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT--GRK  737 (840)
Q Consensus       660 ~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t--g~~  737 (840)
                      |||||+||++++++.+||+|||++....... .........++..|+|||+..+..++.++||||||+++|||++  |..
T Consensus       153 ~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~  231 (295)
T cd05097         153 RDLATRNCLVGNHYTIKIADFGMSRNLYSGD-YYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQ  231 (295)
T ss_pred             cccChhhEEEcCCCcEEecccccccccccCc-ceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999997653321 1111223345678999999988889999999999999999998  566


Q ss_pred             CCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       738 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      ||.....  ...............      ..............+.+++.+|++.||++||++.+|++.|++
T Consensus       232 p~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         232 PYSLLSD--EQVIENTGEFFRNQG------RQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             CCcccCh--HHHHHHHHHhhhhcc------ccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence            7754211  111110000000000      000000111123578889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.2e-35  Score=315.09  Aligned_cols=256  Identities=24%  Similarity=0.348  Sum_probs=198.7

Q ss_pred             cCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      |+..+.||+|+||.||+|...      ....||+|.+.....         ......+.+|+.+++.++||||+++++++
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~---------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   72 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENAS---------SSELRDLLSEFNLLKQVNHPHVIKLYGAC   72 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCC---------HHHHHHHHHHHHHHhhCCCCCEeeEEEEE
Confidence            566788999999999998643      235788888743221         12346788999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCC-----------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeE
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGL-----------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPII  658 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~iv  658 (840)
                      ......++|+||+.+|+|.+++....                       ..+++.+++.++.|++.||+|||+   .+++
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~iv  149 (290)
T cd05045          73 SQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE---MKLV  149 (290)
T ss_pred             ecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHH---CCee
Confidence            99999999999999999999886421                       247899999999999999999999   9999


Q ss_pred             ecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCC
Q 003199          659 HRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRK  737 (840)
Q Consensus       659 H~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~  737 (840)
                      ||||||+||++++++.+||+|||+++....... ........++..|+|||.+.+..++.++||||||+++|||++ |+.
T Consensus       150 H~dikp~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~  228 (290)
T cd05045         150 HRDLAARNVLVAEGRKMKISDFGLSRDVYEEDS-YVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN  228 (290)
T ss_pred             hhhhhhheEEEcCCCcEEeccccccccccCccc-hhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999976533211 111223345678999999988889999999999999999998 999


Q ss_pred             CCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       738 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ||.+..  ....  |.....        .......   ......+.+++.+|++.+|++||+++|+++.|+++-
T Consensus       229 p~~~~~--~~~~--~~~~~~--------~~~~~~~---~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~  287 (290)
T cd05045         229 PYPGIA--PERL--FNLLKT--------GYRMERP---ENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMM  287 (290)
T ss_pred             CCCCCC--HHHH--HHHHhC--------CCCCCCC---CCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence            986431  1111  111000        0000111   122346778888999999999999999999998764

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=1.5e-35  Score=309.65  Aligned_cols=253  Identities=26%  Similarity=0.314  Sum_probs=191.7

Q ss_pred             CeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe-cCcc
Q 003199          532 NKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS-SLYC  606 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~-~~~~  606 (840)
                      +.||+|+||.||+|...    ++..||+|++....         .....+.+.+|+.+++.++|||++++++++. .+..
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~---------~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   71 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT---------DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGS   71 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccC---------CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCC
Confidence            46899999999999653    23579999873221         1233567888999999999999999999775 4556


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++|+||+.+|+|.+++........+..+..++.|++.|++|||+   .+++||||||+||++++++.+||+|||+++..
T Consensus        72 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~  148 (262)
T cd05058          72 PLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLAS---KKFVHRDLAARNCMLDESFTVKVADFGLARDI  148 (262)
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCccccccc
Confidence            789999999999999998765567888889999999999999999   89999999999999999999999999999765


Q ss_pred             hccCCCC-cceecccccccccCccccccCCCCccccchhHHHHHHHHHhC-CCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          687 QARGGKD-STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITG-RKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       687 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....... .......++..|+|||+..+..++.++||||||+++|||++| .+||....  ..   .....         
T Consensus       149 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~--~~---~~~~~---------  214 (262)
T cd05058         149 YDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVD--SF---DITVY---------  214 (262)
T ss_pred             cCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCC--HH---HHHHH---------
Confidence            3311101 111233456789999999888899999999999999999995 55665321  11   11110         


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                       +............+..+.+++.+||+.+|++||++.++++.|+++-
T Consensus       215 -~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         215 -LLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             -HhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence             0000001111112346778889999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=7.2e-36  Score=326.53  Aligned_cols=258  Identities=23%  Similarity=0.277  Sum_probs=197.1

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|... +++.||+|++.....       ......+.+.+|+.+++.++||||+++++++.+
T Consensus        42 ~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~-------~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          42 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEM-------IKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHh-------hhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            468899999999999999999655 688999999843221       112234567889999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++...  .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||++
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NIll~~~~~ikL~DfG~a  189 (371)
T cd05622         115 DRYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTC  189 (371)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHEEECCCCCEEEEeCCce
Confidence            99999999999999999998764  57888899999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccC----CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSS----KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      +.....  .........||+.|+|||++.+.    .++.++|||||||++|||++|+.||.....    ...+... ...
T Consensus       190 ~~~~~~--~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~----~~~~~~i-~~~  262 (371)
T cd05622         190 MKMNKE--GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL----VGTYSKI-MNH  262 (371)
T ss_pred             eEcCcC--CcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCH----HHHHHHH-HcC
Confidence            765331  11223456799999999998653    378999999999999999999999975311    1111110 000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHhh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT--RPTMNEVVQLLA  808 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rps~~evl~~L~  808 (840)
                      ..      ....+ ...+....+.+++.+|+..++.+  ||++.|++++..
T Consensus       263 ~~------~~~~~-~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~  306 (371)
T cd05622         263 KN------SLTFP-DDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLF  306 (371)
T ss_pred             CC------cccCC-CcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCcc
Confidence            00      00011 11123345566777899744433  789999998753

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=3.4e-36  Score=330.59  Aligned_cols=264  Identities=23%  Similarity=0.294  Sum_probs=195.2

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc-
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY-  605 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-  605 (840)
                      |+..+.||+|+||.||+|.. .+|+.||||++....        ......+.+.+|+++++.++|+||+++++++.... 
T Consensus         2 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   73 (372)
T cd07853           2 VEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVF--------QNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHI   73 (372)
T ss_pred             CcccceeeeCCCEEEEEEEECCCCCEEEEEeccccc--------cchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCc
Confidence            56778999999999999964 579999999874321        11223456889999999999999999999998766 


Q ss_pred             ----cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          606 ----CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       606 ----~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                          ..++|+||+. ++|.+.+.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        74 ~~~~~~~lv~e~~~-~~l~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg  148 (372)
T cd07853          74 DPFEEIYVVTELMQ-SDLHKIIVSPQ-PLSSDHVKVFLYQILRGLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFG  148 (372)
T ss_pred             cccceEEEEeeccc-cCHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHHEEECCCCCEEecccc
Confidence                7899999996 68888876553 68999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh-cc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV-DT  759 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~  759 (840)
                      +++.....  .........+++.|+|||.+.+. .++.++||||+||++|||++|+.||....... .......... ..
T Consensus       149 ~a~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~g~~~  225 (372)
T cd07853         149 LARVEEPD--ESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQ-QLDLITDLLGTPS  225 (372)
T ss_pred             ceeecccC--ccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHcCCCC
Confidence            99765321  11222344678999999998774 47899999999999999999999997532110 0000000000 00


Q ss_pred             cc-------chhh-hccccc-CCC-------cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          760 KE-------GIME-VLDKKL-SGS-------FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       760 ~~-------~~~~-~~~~~~-~~~-------~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      .+       .... +..... .+.       ..+....+.+++.+|++.||++|||+.|++++-
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp  289 (372)
T cd07853         226 LEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHP  289 (372)
T ss_pred             HHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCH
Confidence            00       0000 000000 000       011234677899999999999999999999873

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=1.2e-35  Score=317.73  Aligned_cols=259  Identities=27%  Similarity=0.329  Sum_probs=200.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC--------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN--------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~  596 (840)
                      ++|...+.||+|+||.||+|...        ++..||+|.+.....         ......+.+|+++++.+ +|+||++
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~---------~~~~~~~~~e~~~l~~l~~h~~i~~   88 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDAT---------EKDLSDLISEMEMMKMIGKHKNIIN   88 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCC---------hHHHHHHHHHHHHHHHhcCCCCEee
Confidence            56888999999999999998642        235799998853211         12245688899999999 7999999


Q ss_pred             eeeEEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          597 LYCYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      +++++......++||||+++|+|.+++....               ..+++.++..++.|++.||+|||+   ++++|||
T Consensus        89 ~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi~H~d  165 (307)
T cd05098          89 LLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS---KKCIHRD  165 (307)
T ss_pred             EEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCccccc
Confidence            9999999999999999999999999997532               247899999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+||+++.++.+||+|||.++....... ........++..|+|||++.+..++.++|||||||++|||++ |..||.
T Consensus       166 lkp~Nill~~~~~~kL~dfg~a~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~  244 (307)
T cd05098         166 LAARNVLVTEDNVMKIADFGLARDIHHIDY-YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  244 (307)
T ss_pred             ccHHheEEcCCCcEEECCCcccccccccch-hhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999999876532110 111122234568999999988889999999999999999998 888886


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      ...     ........ ..         ............++.+++.+|+..+|++||++.++++.|.++.+
T Consensus       245 ~~~-----~~~~~~~~-~~---------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~  301 (307)
T cd05098         245 GVP-----VEELFKLL-KE---------GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILA  301 (307)
T ss_pred             cCC-----HHHHHHHH-Hc---------CCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHH
Confidence            421     11111100 00         00011112234567778889999999999999999999987543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=3.2e-36  Score=324.47  Aligned_cols=240  Identities=26%  Similarity=0.304  Sum_probs=186.5

Q ss_pred             CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHH-HHhccCCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE-TLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||+||+|.. .+|+.||||++......       .......+..|.. +++.++||||+++++++...+..++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~l   73 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVL-------NRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYF   73 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-------hhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEE
Confidence            4699999999999955 47899999998533211       1122344455554 5677899999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|..++.... .+++..+..++.||+.||+|||+   .+|+||||||+||+++.++.+||+|||+++.... 
T Consensus        74 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH~---~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~-  148 (325)
T cd05604          74 VLDFVNGGELFFHLQRER-SFPEPRARFYAAEIASALGYLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIA-  148 (325)
T ss_pred             EEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEeecCCcccCCC-
Confidence            999999999999887654 68999999999999999999999   9999999999999999999999999999875321 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                        .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  .   .........        ..
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--~---~~~~~~~~~--------~~  213 (325)
T cd05604         149 --QSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV--A---EMYDNILHK--------PL  213 (325)
T ss_pred             --CCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH--H---HHHHHHHcC--------Cc
Confidence              12223456799999999999999999999999999999999999999975310  0   000000000        00


Q ss_pred             ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH
Q 003199          770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN  801 (840)
Q Consensus       770 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~  801 (840)
                      ...+.   ....+.+++.+|++.+|.+||++.
T Consensus       214 ~~~~~---~~~~~~~ll~~ll~~~p~~R~~~~  242 (325)
T cd05604         214 VLRPG---ASLTAWSILEELLEKDRQRRLGAK  242 (325)
T ss_pred             cCCCC---CCHHHHHHHHHHhccCHHhcCCCC
Confidence            11111   234566788899999999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.2e-35  Score=309.30  Aligned_cols=259  Identities=26%  Similarity=0.363  Sum_probs=202.1

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |.....||+|++|.||+|.. .+++.||+|.+......... .....+..+.+.+|+.++++++||||+++++++.+...
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASS-KDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccch-hHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            56678999999999999955 46899999988554322111 12223445788999999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++||||+++++|.+++.... .+++..+..++.|++.|++|||+   .+++||||+|+||++++++.++|+|||.++..
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~~l~~~l~~lH~---~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~  156 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYG-AFEETLVRNFVRQILKGLNYLHN---RGIIHRDIKGANILVDNKGGIKISDFGISKKL  156 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhcc-CccHHHHHHHHHHHHHHHHHHHh---cCcccccCCHHHEEEcCCCCEEecccCCCccc
Confidence            999999999999999997753 68899999999999999999999   89999999999999999999999999999876


Q ss_pred             hccCCCC---cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          687 QARGGKD---STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       687 ~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .......   .......|+..|+|||.+.+..++.++||||+|+++|||++|+.||......    .....        .
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~----~~~~~--------~  224 (267)
T cd06628         157 EANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQL----QAIFK--------I  224 (267)
T ss_pred             ccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHH----HHHHH--------H
Confidence            4321111   1112345888999999998888999999999999999999999999753110    00000        0


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .........   ......+.+++.+||+.||.+||++.+++++
T Consensus       225 ~~~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  264 (267)
T cd06628         225 GENASPEIP---SNISSEAIDFLEKTFEIDHNKRPTAAELLKH  264 (267)
T ss_pred             hccCCCcCC---cccCHHHHHHHHHHccCCchhCcCHHHHhhC
Confidence            011111111   1233556678889999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.6e-35  Score=312.57  Aligned_cols=258  Identities=24%  Similarity=0.273  Sum_probs=201.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC-----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS-----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|...+.||+|+||.||+|....     +..||+|++....         .....+.+.+|+.++++++|+|+++++++
T Consensus         6 ~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~---------~~~~~~~~~~e~~~l~~l~h~ni~~~~~~   76 (280)
T cd05043           6 DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHA---------SEIQVTLLLQESCLLYGLSHQNILPILHV   76 (280)
T ss_pred             hheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCC---------CHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            567788999999999999997665     6889999874221         12335678899999999999999999998


Q ss_pred             Eec-CccceEEEeecCCCChHHHhhcCC-------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          601 FSS-LYCNLLVYEYMPNGNLWDALHKGL-------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       601 ~~~-~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      +.. ....++++||+++|+|.+++....       ..+++.++..++.|++.||+|||+   .+++||||||+||+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~i~H~di~p~nil~~~~  153 (280)
T cd05043          77 CIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHK---RGVIHKDIAARNCVIDEE  153 (280)
T ss_pred             EecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCHhhEEEcCC
Confidence            765 567789999999999999987642       358899999999999999999999   999999999999999999


Q ss_pred             CCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhh
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~  751 (840)
                      +.+||+|||+++.+..... ........++..|+|||++.+..++.++||||||+++||+++ |+.||.....  ..   
T Consensus       154 ~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~---  227 (280)
T cd05043         154 LQVKITDNALSRDLFPMDY-HCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP--FE---  227 (280)
T ss_pred             CcEEECCCCCcccccCCce-EEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH--HH---
Confidence            9999999999976533111 111122345678999999988889999999999999999999 9999965311  11   


Q ss_pred             hhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      +...... ..        .. .........+.+++.+||+.||++|||+.++++.|+++.
T Consensus       228 ~~~~~~~-~~--------~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~  277 (280)
T cd05043         228 MAAYLKD-GY--------RL-AQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFH  277 (280)
T ss_pred             HHHHHHc-CC--------CC-CCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence            1111000 00        00 011112345778888999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=7.9e-36  Score=320.79  Aligned_cols=249  Identities=23%  Similarity=0.306  Sum_probs=193.0

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecCc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLY  605 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~  605 (840)
                      |+..+.||+|+||+||+|.. .+|+.||+|++......       .....+.+..|..+++.+. |++|+++++++.+.+
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~   74 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVI-------QDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVD   74 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhh-------hhhHHHHHHHHHHHHHhccCCCchhheeeEEecCC
Confidence            56678999999999999965 47899999998532210       1222456777888888885 577888999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+||++++++.+||+|||+++.
T Consensus        75 ~~~lv~Ey~~~g~L~~~i~~~~-~l~~~~~~~i~~qi~~al~~lH~---~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~  150 (323)
T cd05615          75 RLYFVMEYVNGGDLMYHIQQVG-KFKEPQAVFYAAEISVGLFFLHR---RGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  150 (323)
T ss_pred             EEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeccccccc
Confidence            9999999999999999987654 68999999999999999999999   9999999999999999999999999999875


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...   .........||+.|+|||++.+..++.++||||+||++|||++|+.||.....  ...   .......      
T Consensus       151 ~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~--~~~---~~~i~~~------  216 (323)
T cd05615         151 HMV---DGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE--DEL---FQSIMEH------  216 (323)
T ss_pred             cCC---CCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCH--HHH---HHHHHhC------
Confidence            422   11223345689999999999988899999999999999999999999975311  100   0000000      


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM-----NEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~-----~evl~~  806 (840)
                        ....+..   ....+.+++.+|++.+|.+|++.     +++.++
T Consensus       217 --~~~~p~~---~~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h  257 (323)
T cd05615         217 --NVSYPKS---LSKEAVSICKGLMTKHPSKRLGCGPEGERDIREH  257 (323)
T ss_pred             --CCCCCcc---CCHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcC
Confidence              0011111   23456778889999999999974     455544

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=2e-35  Score=307.45  Aligned_cols=248  Identities=26%  Similarity=0.359  Sum_probs=196.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE-ecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF-SSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~  604 (840)
                      ++|...+.||+|+||.||+|... |..||+|.+....            ..+.+.+|+.++++++|+|++++++++ ...
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~------------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA------------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK   72 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCc------------hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCC
Confidence            46778889999999999999766 7889999873221            135688999999999999999999976 455


Q ss_pred             ccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++|+||+++++|.+++.... ..+++..+..++.|++.||+|||+   ++++||||||+||++++++.+|++|||++
T Consensus        73 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~  149 (256)
T cd05082          73 GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLT  149 (256)
T ss_pred             CceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccccchheEEEcCCCcEEecCCccc
Confidence            67899999999999999997653 348899999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +.....      .....++..|+|||++.+..++.++|||||||++|||++ |+.||....  ......+..   . .  
T Consensus       150 ~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~--~~~~~~~~~---~-~--  215 (256)
T cd05082         150 KEASST------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPRVE---K-G--  215 (256)
T ss_pred             eecccc------CCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHh---c-C--
Confidence            754321      122334568999999988889999999999999999998 999986421  111111100   0 0  


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                          ......   ......+.+++.+|++.+|++|||+.++++.|+++
T Consensus       216 ----~~~~~~---~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         216 ----YKMDAP---DGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             ----CCCCCC---CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence                001111   12235667788899999999999999999998763

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=2e-35  Score=308.09  Aligned_cols=252  Identities=27%  Similarity=0.409  Sum_probs=200.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.|...+.||+|+||.||+|...++..||+|.+....           ...+.+.+|++++++++|+|++++++++.+ .
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-----------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~   73 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-----------MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-E   73 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-----------hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-C
Confidence            5677889999999999999988778889999874321           124568889999999999999999999887 6


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++... ...+++.++..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||.+.
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~  150 (260)
T cd05073          74 PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLAR  150 (260)
T ss_pred             CeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCCccee
Confidence            789999999999999999764 3467899999999999999999999   899999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  .........++..|+|||++....++.++||||||+++|++++ |+.||....  ......+..    ...  
T Consensus       151 ~~~~~--~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--~~~~~~~~~----~~~--  220 (260)
T cd05073         151 VIEDN--EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--NPEVIRALE----RGY--  220 (260)
T ss_pred             eccCC--CcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHh----CCC--
Confidence            65331  1112223345678999999988889999999999999999999 999987531  111111110    000  


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                             ..+........+.+++.+|++.+|++||++.++.+.|+.
T Consensus       221 -------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         221 -------RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             -------CCCCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence                   001112233567788889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.5e-35  Score=314.88  Aligned_cols=251  Identities=25%  Similarity=0.348  Sum_probs=200.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..+|+..+.||+|++|.||+|.. .+++.||+|.+.....          ...+.+.+|+.+++.++|+|++++++++..
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~----------~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~   88 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ----------PKKELIINEILVMRENKNPNIVNYLDSYLV   88 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCc----------chHHHHHHHHHHHHhCCCCCEeeEEEEEEe
Confidence            35677888999999999999964 5789999998843321          123567889999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++++|.+++...  .+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus        89 ~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~i~~ql~~aL~~LH~---~gi~H~dLkp~Nill~~~~~~kl~dfg~~  163 (296)
T cd06654          89 GDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFC  163 (296)
T ss_pred             CCEEEEeecccCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEEECccccc
Confidence            99999999999999999998754  57899999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ......   ........|++.|+|||.+.+..++.++|||||||++|||++|+.||.......    .+........   
T Consensus       164 ~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~----~~~~~~~~~~---  233 (296)
T cd06654         164 AQITPE---QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR----ALYLIATNGT---  233 (296)
T ss_pred             hhcccc---ccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHH----hHHHHhcCCC---
Confidence            765321   112234568899999999988889999999999999999999999997532211    1110000000   


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           .. ..........+.+++.+|+..+|++||++.+++++
T Consensus       234 -----~~-~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         234 -----PE-LQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             -----CC-CCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence                 00 01112233456778889999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=1.4e-35  Score=321.74  Aligned_cols=260  Identities=26%  Similarity=0.349  Sum_probs=197.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|..      .+++.||||++.....         ......+.+|+.++.++ +|+||++++
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~~h~niv~~~   77 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---------HSEHRALMSELKILIHIGHHLNVVNLL   77 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC---------hHHHHHHHHHHHHHHhccCCccHhhhc
Confidence            4688889999999999999953      3578999999843221         12245688899999999 689999999


Q ss_pred             eEEecC-ccceEEEeecCCCChHHHhhcCC--------------------------------------------------
Q 003199          599 CYFSSL-YCNLLVYEYMPNGNLWDALHKGL--------------------------------------------------  627 (840)
Q Consensus       599 ~~~~~~-~~~~lV~e~~~~gsL~~~l~~~~--------------------------------------------------  627 (840)
                      +++... ...++||||+++|+|.+++....                                                  
T Consensus        78 ~~~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (343)
T cd05103          78 GACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKS  157 (343)
T ss_pred             ceeecCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCc
Confidence            988654 45689999999999999886421                                                  


Q ss_pred             ----------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCC
Q 003199          628 ----------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG  691 (840)
Q Consensus       628 ----------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~  691 (840)
                                      ..+++..+..++.|+++||+|||+   ++|+||||||+||++++++.+||+|||++....... 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~-  233 (343)
T cd05103         158 LSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDP-  233 (343)
T ss_pred             cccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCccCeEEEcCCCcEEEEecccccccccCc-
Confidence                            136788889999999999999999   999999999999999999999999999997653211 


Q ss_pred             CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       692 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                      .........++..|+|||.+.+..++.++||||||+++|||++ |..||...... ...   ... ....      ....
T Consensus       234 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~---~~~-~~~~------~~~~  302 (343)
T cd05103         234 DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEF---CRR-LKEG------TRMR  302 (343)
T ss_pred             chhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcccc-HHH---HHH-Hhcc------CCCC
Confidence            1111122345678999999988899999999999999999997 99998653111 000   000 0000      0001


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      .+..   ...++.+++.+||+.||++||++.|++++|+.+-.
T Consensus       303 ~~~~---~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         303 APDY---TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             CCCC---CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            1111   22457788899999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=2.5e-35  Score=308.55  Aligned_cols=255  Identities=25%  Similarity=0.356  Sum_probs=194.6

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec--
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS--  603 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--  603 (840)
                      .|+..+.||+|+||.||+|.. .++..||+|++......     ....+..+.+.+|+.++++++||||+++++++.+  
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   77 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPES-----PETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRA   77 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCC-----chhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCC
Confidence            467788999999999999955 46899999987533211     1122345678899999999999999999998865  


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++++||+++++|.+++.... .+++.....++.|++.||+|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        78 ~~~~~l~~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~LH~---~~i~H~~l~p~nil~~~~~~~~l~dfg~~  153 (266)
T cd06651          78 EKTLTIFMEYMPGGSVKDQLKAYG-ALTESVTRKYTRQILEGMSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGAS  153 (266)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccCCCc
Confidence            356689999999999999998754 58899999999999999999999   89999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +................++..|+|||++.+..++.++|||||||++|||++|+.||.....    ......         
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~----~~~~~~---------  220 (266)
T cd06651         154 KRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEA----MAAIFK---------  220 (266)
T ss_pred             cccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccch----HHHHHH---------
Confidence            7653221112222335688999999999888899999999999999999999999974311    100000         


Q ss_pred             hhhcccccCCCcHH-HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRD-EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~-~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        .......+.... ....+..++ +||..+|++||+++|++++
T Consensus       221 --~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~h  261 (266)
T cd06651         221 --IATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLRH  261 (266)
T ss_pred             --HhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhcC
Confidence              000001111111 122333444 7888999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.8e-35  Score=307.02  Aligned_cols=239  Identities=23%  Similarity=0.306  Sum_probs=186.4

Q ss_pred             CeeeccCCcEEEEEEeCC-------------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          532 NKVGQGGSGTVYKIDLNS-------------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~-------------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      +.||+|+||.||+|.+.+             ...||+|.+....          ......+.+|+.+++.++||||++++
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----------~~~~~~~~~~~~~l~~l~hp~iv~~~   70 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH----------RDISLAFFETASMMRQVSHKHIVLLY   70 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh----------hhHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            368999999999996542             2258888763221          23345788899999999999999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC----
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ----  674 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~----  674 (840)
                      +++......++||||+++|+|..++......+++..+..++.|+++|++|||+   ++|+||||||+||+++.++.    
T Consensus        71 ~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~~~~  147 (262)
T cd05077          71 GVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLED---KDLVHGNVCTKNILLAREGIDGEC  147 (262)
T ss_pred             EEEecCCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhh---CCeECCCCCcccEEEecCCccCCC
Confidence            99999989999999999999999887665568999999999999999999999   99999999999999987654    


Q ss_pred             ---CeeecccchhhhhccCCCCcceecccccccccCccccc-cCCCCccccchhHHHHHHHHH-hCCCCCCCCCCCCcch
Q 003199          675 ---PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELI-TGRKPVEDDFGDNKNI  749 (840)
Q Consensus       675 ---~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~slG~il~el~-tg~~p~~~~~~~~~~~  749 (840)
                         ++++|||++.....       .....++..|+|||.+. +..++.++|||||||++|||+ +|+.||.......   
T Consensus       148 ~~~~~l~d~g~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~---  217 (262)
T cd05077         148 GPFIKLSDPGIPITVLS-------RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAE---  217 (262)
T ss_pred             CceeEeCCCCCCccccC-------cccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhH---
Confidence               89999999865422       12345788999999886 466899999999999999998 5888876421100   


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                        ...           ...... ....+....+.+++.+||+.||++||++.++++++
T Consensus       218 --~~~-----------~~~~~~-~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         218 --KER-----------FYEGQC-MLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             --HHH-----------HHhcCc-cCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence              000           000000 00111234567888899999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.4e-35  Score=323.92  Aligned_cols=261  Identities=23%  Similarity=0.295  Sum_probs=196.3

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ...++|...+.||+|+||.||+|.. .+++.||||++.....        .....+.+.+|+.+++.++||||+++++++
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~niv~~~~~~   85 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ--------NQTHAKRAYRELVLMKCVNHKNIISLLNVF   85 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCccc--------ChHHHHHHHHHHHHHHHhCCCchhceeeee
Confidence            4567899999999999999999954 4689999998854321        122345677899999999999999999987


Q ss_pred             ecC------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          602 SSL------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       602 ~~~------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      ...      ...++||||+++ ++.+.+..   .+++..+..++.|+++||+|||+   ++|+||||||+||+++.++.+
T Consensus        86 ~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~---~givHrDikp~Nill~~~~~~  158 (355)
T cd07874          86 TPQKSLEEFQDVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTL  158 (355)
T ss_pred             eccccccccceeEEEhhhhcc-cHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEECCCCCE
Confidence            543      346899999964 67776654   47899999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|||+++....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+...    ...+...
T Consensus       159 kl~Dfg~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~~~~  230 (355)
T cd07874         159 KILDFGLARTAGT----SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY----IDQWNKV  230 (355)
T ss_pred             EEeeCcccccCCC----ccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHH
Confidence            9999999976432    2223345789999999999988999999999999999999999999975321    0001000


Q ss_pred             hhc-----------cccchhhhcc---------------cc-cC---CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 003199          756 KVD-----------TKEGIMEVLD---------------KK-LS---GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ  805 (840)
Q Consensus       756 ~~~-----------~~~~~~~~~~---------------~~-~~---~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~  805 (840)
                      ...           ..........               .. ..   .........+.+++.+|++.||++|||+.|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~  310 (355)
T cd07874         231 IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQ  310 (355)
T ss_pred             HHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhc
Confidence            000           0000000000               00 00   000112345678999999999999999999999


Q ss_pred             H
Q 003199          806 L  806 (840)
Q Consensus       806 ~  806 (840)
                      +
T Consensus       311 h  311 (355)
T cd07874         311 H  311 (355)
T ss_pred             C
Confidence            7

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=1.4e-35  Score=320.13  Aligned_cols=258  Identities=21%  Similarity=0.260  Sum_probs=197.1

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|+||+||++... +++.||+|++....       .........+.+|+.++..++|++|+++++++.+..
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~   74 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWE-------MLKRAETACFREERNVLVNGDCQWITTLHYAFQDEN   74 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHH-------HHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence            5778899999999999999654 68899999884321       111223456788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.
T Consensus        75 ~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~---~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~  151 (331)
T cd05624          75 YLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQ---LHYVHRDIKPDNVLLDMNGHIRLADFGSCLK  151 (331)
T ss_pred             EEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCchHHEEEcCCCCEEEEeccceee
Confidence            9999999999999999998755578999999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCcccccc-----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ....  .........||+.|+|||++.+     +.++.++|||||||++|||++|+.||.....     ...........
T Consensus       152 ~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-----~~~~~~i~~~~  224 (331)
T cd05624         152 MNQD--GTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESL-----VETYGKIMNHE  224 (331)
T ss_pred             ccCC--CceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCH-----HHHHHHHHcCC
Confidence            5331  1122234579999999998865     4678899999999999999999999975311     01111000000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT--RPTMNEVVQLL  807 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rps~~evl~~L  807 (840)
                      .      ...++....+....+.+++.+|+..++++  |+++++++++-
T Consensus       225 ~------~~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~  267 (331)
T cd05624         225 E------RFQFPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHA  267 (331)
T ss_pred             C------cccCCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcCC
Confidence            0      00111222223455667777888765544  56899998763

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=2.6e-35  Score=313.69  Aligned_cols=263  Identities=25%  Similarity=0.343  Sum_probs=200.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC-----------------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS-----------------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN  588 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~-----------------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~  588 (840)
                      ++|+..+.||+|+||.||+|....                 +..||+|.+.....         ....+.+.+|++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~---------~~~~~~~~~e~~~l~~   75 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS---------DNAREDFLKEVKILSR   75 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC---------HHHHHHHHHHHHHHHh
Confidence            467888999999999999985542                 24589998743321         2345678999999999


Q ss_pred             cCCCCcceeeeEEecCccceEEEeecCCCChHHHhhcCC----------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeE
Q 003199          589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGL----------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPII  658 (840)
Q Consensus       589 l~h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~iv  658 (840)
                      ++|||++++++++......++|+||+++++|.+++....          ..+++..++.++.|++.||+|||+   .+++
T Consensus        76 l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~---~~i~  152 (296)
T cd05051          76 LSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLES---LNFV  152 (296)
T ss_pred             cCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH---cCcc
Confidence            999999999999999999999999999999999987653          258999999999999999999999   9999


Q ss_pred             ecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh--CC
Q 003199          659 HRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT--GR  736 (840)
Q Consensus       659 H~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t--g~  736 (840)
                      ||||||+||+++.++.++|+|||+++..... ..........+++.|+|||++.+..++.++|||||||++|||++  |.
T Consensus       153 H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~  231 (296)
T cd05051         153 HRDLATRNCLVGKNYTIKIADFGMSRNLYSS-DYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCRE  231 (296)
T ss_pred             ccccchhceeecCCCceEEccccceeecccC-cceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCC
Confidence            9999999999999999999999998765332 11122234456788999999988889999999999999999998  67


Q ss_pred             CCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       737 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      .||....  ................      .....+.......++.+++.+|++.||++|||+.|+++.|++
T Consensus       232 ~p~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~~  296 (296)
T cd05051         232 QPYEHLT--DQQVIENAGHFFRDDG------RQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQR  296 (296)
T ss_pred             CCCCCcC--hHHHHHHHHhcccccc------ccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence            7775421  1111111100000000      000001111223568889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-39  Score=322.32  Aligned_cols=397  Identities=27%  Similarity=0.378  Sum_probs=281.4

Q ss_pred             ccccccccCCCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccc
Q 003199            2 SFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALH   81 (840)
Q Consensus         2 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~   81 (840)
                      +.|.++-.-+++.++..|.+|++++|.+. ..|.+++.+..++.|+.++|   ++..+|++ +.++.+|+.|+.++|.+.
T Consensus        53 s~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n---~ls~lp~~-i~s~~~l~~l~~s~n~~~  127 (565)
T KOG0472|consen   53 SHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN---KLSELPEQ-IGSLISLVKLDCSSNELK  127 (565)
T ss_pred             ccCchhhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc---hHhhccHH-Hhhhhhhhhhhcccccee
Confidence            45666667777888888888888888888 77777888888888888887   55555543 566666666666666665


Q ss_pred             ccCCccccCCCCCcEEEccCCcccccCchhhhc-----------------------CCCCCeeecccCccccccCCcccC
Q 003199           82 GQIPASIGNVTSLTDLELTGNFITGHIPPEIGL-----------------------LKNLRQLELYYNQQLAGTIPEELG  138 (840)
Q Consensus        82 ~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~-----------------------l~~L~~L~L~~n~~~~~~~p~~l~  138 (840)
                       .+|+.++.+-.|..|+..+|+|. ..|+.+..                       ++.|++||+..|-  .+.+|..++
T Consensus       128 -el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~--L~tlP~~lg  203 (565)
T KOG0472|consen  128 -ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL--LETLPPELG  203 (565)
T ss_pred             -ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh--hhcCChhhc
Confidence             34444555555555555555554 33333333                       5566666665554  667888888


Q ss_pred             CCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCccee
Q 003199          139 NLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVL  218 (840)
Q Consensus       139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  218 (840)
                      ++.+|+-|+|.+|+|. .+| .|.++..|+.|+++.|+|...+.....++++|..|||++|+++ ..|..+.-+++|.+|
T Consensus       204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rL  280 (565)
T KOG0472|consen  204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERL  280 (565)
T ss_pred             chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhh
Confidence            8888888888888888 566 7888888888888888888666666668888888888888888 678888888888888


Q ss_pred             ccccccccccCCccccCCCCchhhhccccccccc--------------------------------------CCccc---
Q 003199          219 DLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV--------------------------------------LPDSL---  257 (840)
Q Consensus       219 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------------------------~~~~~---  257 (840)
                      |+|+|.|+ ..|..++++ .|+.|.+-+|.+.++                                      .+..|   
T Consensus       281 DlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~  358 (565)
T KOG0472|consen  281 DLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI  358 (565)
T ss_pred             cccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch
Confidence            88888887 566777777 777777777655210                                      00011   


Q ss_pred             ccccCCc--------------------------eEEeeCceeeccCCccccCCCcccE-EeccCCcccccCCcccCCCCC
Q 003199          258 ARCKNLL--------------------------RFRVSNNHLEGSIPEGILSLPHVSI-IDLSYNSFSGPIANTVGNARN  310 (840)
Q Consensus       258 ~~l~~L~--------------------------~L~l~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~  310 (840)
                      ..+.+.+                          .++++.|++. ++|..+..+..+.+ +++++|.+ +.+|..++.+++
T Consensus       359 ~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~k  436 (565)
T KOG0472|consen  359 YAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQK  436 (565)
T ss_pred             hhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhc
Confidence            1112233                          3444445544 44444444443333 23333333 366777788888


Q ss_pred             CceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcC
Q 003199          311 LSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSN  390 (840)
Q Consensus       311 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  390 (840)
                      |..|+|++|-+. .+|.+++.+..|+.||+|+|++. .+|..+..+..++.+-.++|++....|..+.+|.+|..|||.+
T Consensus       437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence            888888888887 67888888888888888888887 6787777777777777777888766677799999999999999


Q ss_pred             ccccccCCchhhcc-CCCeEEccCCCCc
Q 003199          391 NLLTGYIPESLCEL-LPNSINFSNNRLS  417 (840)
Q Consensus       391 N~l~~~~p~~~~~~-~~~~l~l~~N~l~  417 (840)
                      |.+. .+|+.+.++ .++.|++.+|+|+
T Consensus       515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  515 NDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             Cchh-hCChhhccccceeEEEecCCccC
Confidence            9998 888888888 5688999999998

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=2.8e-35  Score=307.46  Aligned_cols=249  Identities=28%  Similarity=0.390  Sum_probs=200.8

Q ss_pred             CeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccc
Q 003199          532 NKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  607 (840)
                      +.||+|+||.||+|....    +..||+|.+......         ...+.+.+|+++++.++|+|++++++++......
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~---------~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   71 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASE---------EERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPL   71 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccch---------hHHHHHHHHHHHHhhcCCCChheeeeeecCCCce
Confidence            469999999999996653    789999998543311         1356788999999999999999999999999999


Q ss_pred             eEEEeecCCCChHHHhhcC--------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          608 LLVYEYMPNGNLWDALHKG--------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      ++||||+++++|.+++...        ...+++..+..++.|++.|++|||+   ++++||||||+||++++++.++|+|
T Consensus        72 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~nili~~~~~~~l~d  148 (262)
T cd00192          72 YLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISD  148 (262)
T ss_pred             EEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHc---CCcccCccCcceEEECCCCcEEEcc
Confidence            9999999999999999876        3578999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      ||.+........ ........++..|+|||.+....++.++||||+|+++|||++ |..||....  ......   .   
T Consensus       149 fg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~~~~~---~---  219 (262)
T cd00192         149 FGLSRDVYDDDY-YRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS--NEEVLE---Y---  219 (262)
T ss_pred             cccccccccccc-cccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC--HHHHHH---H---
Confidence            999987654221 122344567889999999988889999999999999999999 699987541  111111   0   


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                             ...............++.+++.+|++.+|++|||+.|++++|+
T Consensus       220 -------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         220 -------LRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             -------HHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                   0001111111222456778888999999999999999999874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-35  Score=309.35  Aligned_cols=248  Identities=27%  Similarity=0.368  Sum_probs=191.5

Q ss_pred             CeeeccCCcEEEEEEeC-CCc--EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccc
Q 003199          532 NKVGQGGSGTVYKIDLN-SGE--VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  607 (840)
                      +.||+|+||.||+|... ++.  .+|+|.++...         .......+..|++++.++ +||||+++++++......
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~---------~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~   71 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA---------SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   71 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccC---------CHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCc
Confidence            36899999999999765 444  46888774321         122345788899999999 799999999999999999


Q ss_pred             eEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          608 LLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      ++||||+++|+|.+++....               ..+++.++..++.|++.|++|||+   .+++||||||+||+++++
T Consensus        72 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nili~~~  148 (270)
T cd05047          72 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGEN  148 (270)
T ss_pred             eEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccccceEEEcCC
Confidence            99999999999999987532               247899999999999999999999   999999999999999999


Q ss_pred             CCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhh
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~  751 (840)
                      +.+|++|||++.....    .........+..|+|||++....++.++||||||+++|||++ |..||.....  ...  
T Consensus       149 ~~~kl~dfgl~~~~~~----~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~--~~~--  220 (270)
T cd05047         149 YVAKIADFGLSRGQEV----YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AEL--  220 (270)
T ss_pred             CeEEECCCCCccccch----hhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH--HHH--
Confidence            9999999999853211    111112234567999999988889999999999999999997 9999964211  111  


Q ss_pred             hhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                       .... .         ..............+.+++.+|++.+|.+|||+.++++.|.++
T Consensus       221 -~~~~-~---------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~  268 (270)
T cd05047         221 -YEKL-P---------QGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  268 (270)
T ss_pred             -HHHH-h---------CCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence             1000 0         0000001112234677889999999999999999999999765

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=1.1e-35  Score=314.13  Aligned_cols=254  Identities=24%  Similarity=0.289  Sum_probs=197.4

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|+||.||+|.. .+++.||||.+......       .......+..|+.++++++|++++++++.+.+.+.
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~-------~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~   74 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIK-------KRKGESMALNEKQILEKVNSRFVVSLAYAYETKDA   74 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhcc-------chHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCE
Confidence            55667899999999999855 47899999988433211       12233557789999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          607 NLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      .++||||+++++|.+++... ...+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||++..
T Consensus        75 ~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~  151 (285)
T cd05630          75 LCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQ---ERIVYRDLKPENILLDDHGHIRISDLGLAVH  151 (285)
T ss_pred             EEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeccceee
Confidence            99999999999999988643 2368999999999999999999999   9999999999999999999999999999865


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...    ........|+..|+|||++.+..++.++||||+|+++|||++|+.||........ .......        ..
T Consensus       152 ~~~----~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~-~~~~~~~--------~~  218 (285)
T cd05630         152 VPE----GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIK-REEVERL--------VK  218 (285)
T ss_pred             cCC----CccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccch-HHHHHhh--------hh
Confidence            432    1122234689999999999988999999999999999999999999975321110 0000000        00


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHHh
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQLL  807 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~L  807 (840)
                      .........   ....+.+++.+|++.||++|||     +.|++++-
T Consensus       219 ~~~~~~~~~---~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~  262 (285)
T cd05630         219 EVQEEYSEK---FSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHP  262 (285)
T ss_pred             hhhhhcCcc---CCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcCh
Confidence            000111112   2345667888999999999999     88998753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=319.29  Aligned_cols=245  Identities=27%  Similarity=0.388  Sum_probs=199.4

Q ss_pred             eeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEE
Q 003199          533 KVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVY  611 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~  611 (840)
                      ++|+|.||+||-|+.. +...+|||-+....          .+..+-+++||..-++++|.|||+++|.+.+.+..-+.|
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekd----------sr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFM  651 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKD----------SREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFM  651 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeeccccc----------chhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEe
Confidence            6999999999999554 56678999874332          233566889999999999999999999999999989999


Q ss_pred             eecCCCChHHHhhcCCCCC--ChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc-CCCCCeeecccchhhhhc
Q 003199          612 EYMPNGNLWDALHKGLVHL--DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD-VNYQPKVADFGIAKVLQA  688 (840)
Q Consensus       612 e~~~~gsL~~~l~~~~~~~--~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~Dfg~a~~~~~  688 (840)
                      |-++||+|.+.++..=..+  .+.++..+..||++||.|||+   ..|||||||-.|||++ -.|.+||+|||-++++. 
T Consensus       652 EqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHe---n~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLA-  727 (1226)
T KOG4279|consen  652 EQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHE---NKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLA-  727 (1226)
T ss_pred             ecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhh---cceeeccccCCcEEEeeccceEEecccccchhhc-
Confidence            9999999999998763344  778889999999999999999   8999999999999996 47899999999999875 


Q ss_pred             cCCCCcceecccccccccCccccccC--CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          689 RGGKDSTTTVIAGTYGYLAPEYAYSS--KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       689 ~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                        +-...+..+.||..|||||++..+  .|+.++|||||||.+.||.||++||.......+.....           .  
T Consensus       728 --ginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkV-----------G--  792 (1226)
T KOG4279|consen  728 --GINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKV-----------G--  792 (1226)
T ss_pred             --cCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhh-----------c--
Confidence              345566788999999999999664  58999999999999999999999997543322211110           0  


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .-+.-++-..+...+...++.+|..+||.+||+++++++.
T Consensus       793 myKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~D  832 (1226)
T KOG4279|consen  793 MYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQD  832 (1226)
T ss_pred             ceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccC
Confidence            1111233344556677778889999999999999999864

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.8e-35  Score=312.93  Aligned_cols=271  Identities=26%  Similarity=0.340  Sum_probs=203.9

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .|+..+.||+|+||.||+|.+.     ++..||||++.....         ....+.+.+|+++++.+.|+||+++++++
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~---------~~~~~~~~~ei~~l~~l~~~~i~~~~~~~   75 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGE---------EQHRSDFEREIEILRTLDHENIVKYKGVC   75 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccc---------hHHHHHHHHHHHHHHhCCCCChheEEeee
Confidence            4566789999999999999653     468999999853321         13456789999999999999999999998


Q ss_pred             ec--CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          602 SS--LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       602 ~~--~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      ..  ....++||||+++++|.+++......+++..+..++.|++.||+|||+   .+++||||||+||+++.++.++|+|
T Consensus        76 ~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~d  152 (284)
T cd05038          76 EKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGS---QRYIHRDLAARNILVESEDLVKISD  152 (284)
T ss_pred             ecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcc
Confidence            77  557899999999999999998766569999999999999999999999   8999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ||.+.................++..|+|||...+..++.++||||||+++|||++|+.|+............... ....
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~-~~~~  231 (284)
T cd05038         153 FGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQ-GQMI  231 (284)
T ss_pred             cccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhcccccccc-cccc
Confidence            999987643211111122234556799999998889999999999999999999999998653221110000000 0000


Q ss_pred             ccchhhhcccccC-CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          760 KEGIMEVLDKKLS-GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       760 ~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .....+.+..... ........++.+++.+|++.+|++||++.|++++|+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         232 VTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             HHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            0000011111110 11112235678899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=3.2e-35  Score=312.78  Aligned_cols=263  Identities=24%  Similarity=0.320  Sum_probs=198.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-----------------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-----------------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN  588 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-----------------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~  588 (840)
                      ++|+..+.||+|+||.||++...                 ++..||+|++....         .......+.+|+++++.
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~---------~~~~~~~~~~E~~~l~~   75 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA---------NKNARNDFLKEIKIMSR   75 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC---------CHHHHHHHHHHHHHHHh
Confidence            46788899999999999998532                 23468999874322         12335678899999999


Q ss_pred             cCCCCcceeeeEEecCccceEEEeecCCCChHHHhhcCC----------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeE
Q 003199          589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGL----------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPII  658 (840)
Q Consensus       589 l~h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~iv  658 (840)
                      ++|+||+++++++...+..++||||+++|+|.+++....          ..+++.++..++.|++.|++|||+   .+++
T Consensus        76 l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~  152 (296)
T cd05095          76 LKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS---LNFV  152 (296)
T ss_pred             CCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCee
Confidence            999999999999999999999999999999999987642          246788999999999999999999   8999


Q ss_pred             ecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh--CC
Q 003199          659 HRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT--GR  736 (840)
Q Consensus       659 H~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t--g~  736 (840)
                      ||||||+||++++++.++|+|||+++.+..... ........++..|+|||...++.++.++|||||||++|||++  |.
T Consensus       153 H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~  231 (296)
T cd05095         153 HRDLATRNCLVGKNYTIKIADFGMSRNLYSGDY-YRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKE  231 (296)
T ss_pred             cccCChheEEEcCCCCEEeccCcccccccCCcc-eeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCC
Confidence            999999999999999999999999976533111 111222344678999999888889999999999999999998  77


Q ss_pred             CCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       737 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      .||.....  ..............      ......+........+.+++.+||+.||++||++.+|++.|++
T Consensus       232 ~p~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         232 QPYSQLSD--EQVIENTGEFFRDQ------GRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             CCccccCh--HHHHHHHHHHHhhc------cccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            88864211  11110000000000      0000001111223567788999999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-36  Score=319.87  Aligned_cols=250  Identities=24%  Similarity=0.363  Sum_probs=204.3

Q ss_pred             CccCeeeccCCcEEEEEEeC--CCc--EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          529 TEKNKVGQGGSGTVYKIDLN--SGE--VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~--~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ...++||+|.||.|++|.|.  +|+  .||||.+.....         .....+|.+|+.+|.+++|+|++++||...+ 
T Consensus       113 ~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l---------~~~mddflrEas~M~~L~H~hliRLyGvVl~-  182 (1039)
T KOG0199|consen  113 KLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSL---------NAIMDDFLREASHMLKLQHPHLIRLYGVVLD-  182 (1039)
T ss_pred             HHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCcc---------chhHHHHHHHHHHHHhccCcceeEEeeeecc-
Confidence            34568999999999999775  444  589999854332         1256889999999999999999999999987 


Q ss_pred             ccceEEEeecCCCChHHHhhc-CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~-~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....||||.++.|+|.+.|++ ....+.......++.|||.|+.||.+   +++|||||..+|+++-....+||+|||+.
T Consensus       183 qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLes---krlvHRDLAARNlllasprtVKI~DFGLm  259 (1039)
T KOG0199|consen  183 QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLES---KRLVHRDLAARNLLLASPRTVKICDFGLM  259 (1039)
T ss_pred             chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhheecccceeeeecccce
Confidence            677899999999999999998 34567888889999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +.+....+.........-...|+|||.+....++.++|||+|||.+|||+| |+.||.+-.+  ..              
T Consensus       260 RaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g--~q--------------  323 (1039)
T KOG0199|consen  260 RALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRG--IQ--------------  323 (1039)
T ss_pred             eccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCH--HH--------------
Confidence            988654333323333344568999999999999999999999999999999 8999976311  00              


Q ss_pred             hhhhc-ccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          763 IMEVL-DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       763 ~~~~~-~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      +.+.+ +++.-+..+.+..++.+++++||...|++|||+..|.+.+
T Consensus       324 IL~~iD~~erLpRPk~csedIY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  324 ILKNIDAGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             HHHhccccccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence            11222 2233344566778899999999999999999999998554

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=1.9e-35  Score=307.45  Aligned_cols=250  Identities=22%  Similarity=0.292  Sum_probs=198.3

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||++... +++.||+|.+.....         ....+.+.+|+.+++.++|+|++++++++.+..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   71 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS---------SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADG   71 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc---------hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECC
Confidence            3667789999999999999654 789999998843221         223466788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++|+|.+++... ...+++..+..++.|++.|+.|||+   ++++|+||||+||++++++.++++|||.+.
T Consensus        72 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~  148 (255)
T cd08219          72 HLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSAR  148 (255)
T ss_pred             EEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEECCCCcEEEcccCcce
Confidence            999999999999999988653 3457899999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........|++.|+|||++.+..++.++||||||+++|+|++|+.||.....     .....          
T Consensus       149 ~~~~~---~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~-----~~~~~----------  210 (255)
T cd08219         149 LLTSP---GAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSW-----KNLIL----------  210 (255)
T ss_pred             eeccc---ccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCH-----HHHHH----------
Confidence            65331   1122345688999999999888899999999999999999999999975310     00000          


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .................+.+++.+||+.||++||++.+++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         211 KVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             HHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            000011111111223456778889999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.1e-35  Score=315.38  Aligned_cols=263  Identities=24%  Similarity=0.288  Sum_probs=189.9

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc---CCCCcceeeeEEe
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI---RHKNIVKLYCYFS  602 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~  602 (840)
                      +|+..+.||+|+||+||+|.. .+|+.||+|.+.......        .....+.+|+++++.+   +||||+++++++.
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~--------~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~   72 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED--------GLPLSTVREVALLKRLEAFDHPNIVRLMDVCA   72 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC--------CCchHHHHHHHHHHHhhhcCCCCeeeeeeeec
Confidence            367788999999999999955 478999999885432111        1112344566666555   7999999999875


Q ss_pred             c-----CccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCe
Q 003199          603 S-----LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPK  676 (840)
Q Consensus       603 ~-----~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~k  676 (840)
                      .     ....++||||++ ++|.+++.... ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+|
T Consensus        73 ~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~k  148 (288)
T cd07863          73 TSRTDRETKVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGQVK  148 (288)
T ss_pred             cccCCCCceEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEE
Confidence            4     244689999997 58888887643 358999999999999999999999   9999999999999999999999


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |+|||+++....    ........||..|+|||++.+..++.++||||+||++|||++|++||....... .........
T Consensus       149 l~dfg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~-~~~~~~~~~  223 (288)
T cd07863         149 LADFGLARIYSC----QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIFDLI  223 (288)
T ss_pred             ECccCccccccC----cccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHH-HHHHHHHHh
Confidence            999999976532    112234568899999999988899999999999999999999999986532110 010000000


Q ss_pred             -hccccchh-------hhcccccCC----CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          757 -VDTKEGIM-------EVLDKKLSG----SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       757 -~~~~~~~~-------~~~~~~~~~----~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       ........       .........    ...+....+.+++.+|++.||++|||+.|++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~h  285 (288)
T cd07863         224 GLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQH  285 (288)
T ss_pred             CCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence             00000000       000000000    011233456788899999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-35  Score=319.65  Aligned_cols=258  Identities=23%  Similarity=0.269  Sum_probs=194.6

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||+||++... +++.||||++....       .......+.+.+|+.++..++|+||+++++++.+..
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   74 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWE-------MLKRAETACFREERDVLVNGDRRWITNLHYAFQDEN   74 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHH-------HhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCC
Confidence            5778899999999999999654 68999999984321       111223456888999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.+....+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||++..
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  151 (331)
T cd05597          75 NLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQ---LGYVHRDIKPDNVLLDKNGHIRLADFGSCLR  151 (331)
T ss_pred             eEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEECCCCHHHEEECCCCCEEEEECCceee
Confidence            9999999999999999998755578999999999999999999999   9999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCcccccc-----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ....  .........||+.|+|||++..     ..++.++|||||||++|||++|+.||.....     ...........
T Consensus       152 ~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~-----~~~~~~i~~~~  224 (331)
T cd05597         152 LLAD--GTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL-----VETYGKIMNHK  224 (331)
T ss_pred             cCCC--CCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCH-----HHHHHHHHcCC
Confidence            5331  1122233569999999999863     4578899999999999999999999975311     11111011000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCC--CCCCCCCHHHHHHHh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSK--SPATRPTMNEVVQLL  807 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~--dP~~Rps~~evl~~L  807 (840)
                      .    .  ..+..........+.+++.+|+..  ++..||++.+++++-
T Consensus       225 ~----~--~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp  267 (331)
T cd05597         225 E----H--FQFPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDHP  267 (331)
T ss_pred             C----c--ccCCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCC
Confidence            0    0  011111111233445566666544  444488999999883

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-36  Score=304.77  Aligned_cols=253  Identities=23%  Similarity=0.320  Sum_probs=207.7

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..-|...+-||+|.|..|-.|+. -+|..||||++-+.+..        ......+..|++.|+-++|||||++|.....
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD--------~~st~hlfqEVRCMKLVQHpNiVRLYEViDT   88 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLD--------TLSTGHLFQEVRCMKLVQHPNIVRLYEVIDT   88 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccc--------hhhhhHHHHHHHHHHHhcCcCeeeeeehhcc
Confidence            34455566799999999999844 48999999999544322        2234567789999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc-CCCCCeeecccc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD-VNYQPKVADFGI  682 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~Dfg~  682 (840)
                      ....|||+|.=.+|+|++++.+....+.+.-+.+++.||+.|+.|+|+   .++|||||||+||.+- .-|-+|++|||+
T Consensus        89 QTKlyLiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHq---LHVVHRDLKPENVVFFEKlGlVKLTDFGF  165 (864)
T KOG4717|consen   89 QTKLYLILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQ---LHVVHRDLKPENVVFFEKLGLVKLTDFGF  165 (864)
T ss_pred             cceEEEEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhh---hhhhcccCCcceeEEeeecCceEeeeccc
Confidence            999999999999999999999988889999999999999999999999   8999999999999774 568899999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCC-ccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKAT-TKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +..+.+    .......+|+..|-|||++.+..|+ ++.||||+|||+|.+++|+.||+...+.               +
T Consensus       166 SNkf~P----G~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDS---------------E  226 (864)
T KOG4717|consen  166 SNKFQP----GKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDS---------------E  226 (864)
T ss_pred             cccCCC----cchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccch---------------h
Confidence            987754    3455678999999999999998885 6899999999999999999999864221               1


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      +...++|=++. -......++.+|+..|+..||.+|-+.+||..+-+
T Consensus       227 TLTmImDCKYt-vPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~~W  272 (864)
T KOG4717|consen  227 TLTMIMDCKYT-VPSHVSKECRDLIQSMLVRDPKKRASLEEIVSTSW  272 (864)
T ss_pred             hhhhhhccccc-CchhhhHHHHHHHHHHHhcCchhhccHHHHhcccc
Confidence            12222222211 12344567778888999999999999999987644

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2e-35  Score=312.28  Aligned_cols=253  Identities=24%  Similarity=0.281  Sum_probs=195.9

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|+||+||+|.. .+++.||+|.+......       .......+.+|+++++.++|+|++++.+++...+.
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~   74 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIK-------KRKGESMALNEKQILEKVNSQFVVNLAYAYETKDA   74 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhh-------hhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCE
Confidence            55667899999999999855 47899999988433211       12223557789999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          607 NLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      .++||||+++++|.+++... ...+++..+..++.|++.||+|||+   ++|+||||||+||++++++.++|+|||++..
T Consensus        75 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~---~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~  151 (285)
T cd05632          75 LCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHR---ENTVYRDLKPENILLDDYGHIRISDLGLAVK  151 (285)
T ss_pred             EEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEECCCCCEEEecCCccee
Confidence            99999999999999888653 2368999999999999999999999   9999999999999999999999999999865


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...    ........|+..|+|||++.+..++.++|+||||+++|||++|+.||........ ...+.. ..  .    .
T Consensus       152 ~~~----~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~-~~~~~~-~~--~----~  219 (285)
T cd05632         152 IPE----GESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVK-REEVDR-RV--L----E  219 (285)
T ss_pred             cCC----CCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHH-hh--h----c
Confidence            422    1122345689999999999888999999999999999999999999975311100 000000 00  0    0


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~  806 (840)
                      . .......   ....+.+++..|++.||++||+     +.+++++
T Consensus       220 ~-~~~~~~~---~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05632         220 T-EEVYSAK---FSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRH  261 (285)
T ss_pred             c-ccccCcc---CCHHHHHHHHHHccCCHhHcCCCcccChHHHHcC
Confidence            0 0111122   2334567888999999999999     6677665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=3.4e-35  Score=309.67  Aligned_cols=252  Identities=27%  Similarity=0.377  Sum_probs=195.9

Q ss_pred             hcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||+|. ..+++.||+|++....         .......+.+|++++++++||||+++++++....
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   72 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI---------TVELQKQIMSELEILYKCDSPYIIGFYGAFFVEN   72 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC---------ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECC
Confidence            46677899999999999995 4578999999884321         1223467889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|..+.     .+++..+..++.|++.|++|||+   .+|+|+||||+||+++.++.++|+|||++..
T Consensus        73 ~~~lv~e~~~~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~  144 (279)
T cd06619          73 RISICTEFMDGGSLDVYR-----KIPEHVLGRIAVAVVKGLTYLWS---LKILHRDVKPSNMLVNTRGQVKLCDFGVSTQ  144 (279)
T ss_pred             EEEEEEecCCCCChHHhh-----cCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCCHHHEEECCCCCEEEeeCCccee
Confidence            999999999999996542     46888999999999999999999   9999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...     .......|+..|+|||++.+..++.++||||||+++|||++|+.||.......... .+......    ...
T Consensus       145 ~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~-~~~~~~~~----~~~  214 (279)
T cd06619         145 LVN-----SIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSL-MPLQLLQC----IVD  214 (279)
T ss_pred             ccc-----ccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhccccccc-chHHHHHH----Hhc
Confidence            532     12234578999999999998899999999999999999999999997533221111 00000000    000


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      .......  ......++.+++.+|++.+|++||++.|++++-
T Consensus       215 ~~~~~~~--~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~~  254 (279)
T cd06619         215 EDPPVLP--VGQFSEKFVHFITQCMRKQPKERPAPENLMDHP  254 (279)
T ss_pred             cCCCCCC--CCcCCHHHHHHHHHHhhCChhhCCCHHHHhcCc
Confidence            0001111  011234567788899999999999999999874

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2e-35  Score=322.02  Aligned_cols=190  Identities=25%  Similarity=0.301  Sum_probs=163.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ..|...+.||+|+||.||+|... +++.||+|+....                ....|+.++++++|+||+++++++...
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~----------------~~~~E~~~l~~l~h~~iv~~~~~~~~~  129 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG----------------TTLIEAMLLQNVNHPSVIRMKDTLVSG  129 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc----------------ccHHHHHHHHhCCCCCCcChhheEEeC
Confidence            45889999999999999999665 5789999974211                124589999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|+||+ .++|.+++......+++..+..++.||+.||+|||+   ++||||||||+||+++.++.+||+|||+++
T Consensus       130 ~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  205 (357)
T PHA03209        130 AITCMVLPHY-SSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAAQ  205 (357)
T ss_pred             CeeEEEEEcc-CCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEecCcccc
Confidence            9999999999 568999887766679999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCC
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV  739 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~  739 (840)
                      ....    ........||+.|+|||++.+..++.++|||||||++|||+++..|+
T Consensus       206 ~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        206 FPVV----APAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             cccc----CcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            5321    12223456899999999999999999999999999999999965554

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3e-35  Score=326.11  Aligned_cols=259  Identities=21%  Similarity=0.234  Sum_probs=194.0

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|...+.||+|+||.||+|... +++.||||...                ...+.+|++++++++|+|||++++++....
T Consensus       170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~----------------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~  233 (461)
T PHA03211        170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW----------------YASSVHEARLLRRLSHPAVLALLDVRVVGG  233 (461)
T ss_pred             CeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc----------------ccCHHHHHHHHHHCCCCCCCcEEEEEEECC
Confidence            5778889999999999999654 68899999531                123567999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|||++ .++|.+++......++|.++..++.|++.||+|||+   ++||||||||+|||++.++.+||+|||+++.
T Consensus       234 ~~~lv~e~~-~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDLKP~NILl~~~~~vkL~DFGla~~  309 (461)
T PHA03211        234 LTCLVLPKY-RSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHG---EGIIHRDIKTENVLVNGPEDICLGDFGAACF  309 (461)
T ss_pred             EEEEEEEcc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECcCCHHHEEECCCCCEEEcccCCcee
Confidence            999999999 579999887665579999999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCC-C-c----chhhhhhhhhcc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD-N-K----NIIYWVSIKVDT  759 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-~-~----~~~~~~~~~~~~  759 (840)
                      ..... .........||+.|+|||++.+..++.++|||||||++|||++|..|+...... . .    .+..........
T Consensus       310 ~~~~~-~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~  388 (461)
T PHA03211        310 ARGSW-STPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVH  388 (461)
T ss_pred             ccccc-ccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccc
Confidence            53211 111223456999999999999999999999999999999999987665321111 0 0    011111000000


Q ss_pred             ccchhh------------hc----ccc-cCCCcH---HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIME------------VL----DKK-LSGSFR---DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~------------~~----~~~-~~~~~~---~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ......            ..    ... ....+.   .....+.+++.+|++.||++|||+.|++++
T Consensus       389 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        389 VDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             cccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence            000000            00    000 000111   122357789999999999999999999987

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=3.7e-35  Score=307.18  Aligned_cols=259  Identities=26%  Similarity=0.350  Sum_probs=202.5

Q ss_pred             hcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      +|...+.||+|+||.||+|...+|+.+|||.+......    .....+..+.+.+|++++++++|+||+++++++.+...
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~----~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   76 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSN----VLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNT   76 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccc----hhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCe
Confidence            36678899999999999998888999999988543221    11223345678999999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++|+||+++++|.+++.+.. .+++..+..++.|++.|++|||+   .+++|+||+|+||++++++.++|+|||.+...
T Consensus        77 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  152 (265)
T cd06631          77 ISIFMEFVPGGSISSILNRFG-PLPEPVFCKYTKQILDGVAYLHN---NCVVHRDIKGNNVMLMPNGIIKLIDFGCARRL  152 (265)
T ss_pred             EEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHhEEECCCCeEEeccchhhHhh
Confidence            999999999999999997654 67899999999999999999999   89999999999999999999999999999865


Q ss_pred             hccCCC---CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          687 QARGGK---DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       687 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ......   ........|+..|+|||++.+..++.++||||||+++|||++|+.||.....    ....... .. ..  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~----~~~~~~~-~~-~~--  224 (265)
T cd06631         153 AWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDR----LAAMFYI-GA-HR--  224 (265)
T ss_pred             hhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCCh----HHHHHHh-hh-cc--
Confidence            321111   1122345688999999999888899999999999999999999999964311    0000000 00 00  


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        ...+.....   ....+.+++.+|++.+|++||++.+++++
T Consensus       225 --~~~~~~~~~---~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  262 (265)
T cd06631         225 --GLMPRLPDS---FSAAAIDFVTSCLTRDQHERPSALQLLRH  262 (265)
T ss_pred             --CCCCCCCCC---CCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence              001112222   23455677889999999999999999864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=3.7e-35  Score=305.45  Aligned_cols=252  Identities=24%  Similarity=0.350  Sum_probs=201.7

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||.|+||.||.+.. .+++.|++|.+......        ....+.+.+|++++++++|+||+++++++.+..
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~--------~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   72 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLS--------EKERRDALNEIVILSLLQHPNIIAYYNHFMDDN   72 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccc--------hhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCC
Confidence            477788999999999999854 56899999987433211        233456789999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++... ...+++.++..++.|++.|++|||+   .+++||||+|+||++++++.+||+|||.+.
T Consensus        73 ~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~  149 (256)
T cd08221          73 TLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHK---AGILHRDIKTLNIFLTKAGLIKLGDFGISK  149 (256)
T ss_pred             eEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChHhEEEeCCCCEEECcCcceE
Confidence            999999999999999999765 3468999999999999999999999   899999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ......   .......|++.|+|||...+..++.++||||||+++|||++|+.||.....     .....          
T Consensus       150 ~~~~~~---~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~-----~~~~~----------  211 (256)
T cd08221         150 ILGSEY---SMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNP-----LNLVV----------  211 (256)
T ss_pred             Eccccc---ccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCH-----HHHHH----------
Confidence            653321   123345689999999999888889999999999999999999999864211     11110          


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ................++.+++.+|++.+|++||++.++++++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         212 KIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             HHHcCCCCCCccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence            1111111111122345577788899999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=7.1e-36  Score=311.70  Aligned_cols=255  Identities=33%  Similarity=0.473  Sum_probs=198.9

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|+||+||+|... +++.||+|++......        ........+|+.++++++||||+++++++.....
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~--------~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~   72 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIE--------EEEREENIREIKILRRLRHPNIVQILDVFQDDNY   72 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHH--------HHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEecccccc--------ccccchhhhhhhcccccccccccccccccccccc
Confidence            566789999999999999665 5679999998554321        2223344569999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++||||+++++|.+++... ..+++..+..++.|+++||++||+   .+++|+||||+||+++.++.++|+|||.+...
T Consensus        73 ~~~v~~~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~Lh~---~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~  148 (260)
T PF00069_consen   73 LYIVMEYCPGGSLQDYLQKN-KPLSEEEILKIAYQILEALAYLHS---KGIVHRDIKPENILLDENGEVKLIDFGSSVKL  148 (260)
T ss_dssp             EEEEEEEETTEBHHHHHHHH-SSBBHHHHHHHHHHHHHHHHHHHH---TTEEESSBSGGGEEESTTSEEEESSGTTTEES
T ss_pred             cccccccccccccccccccc-cccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence            99999999999999999843 368999999999999999999999   99999999999999999999999999998754


Q ss_pred             hccCCCCcceecccccccccCccccc-cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      .   ..........++..|+|||.+. +..++.++||||+|+++|+|++|..||.....  ...........      ..
T Consensus       149 ~---~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~--~~~~~~~~~~~------~~  217 (260)
T PF00069_consen  149 S---ENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNS--DDQLEIIEKIL------KR  217 (260)
T ss_dssp             T---STTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSH--HHHHHHHHHHH------HT
T ss_pred             c---ccccccccccccccccccccccccccccccccccccccccccccccccccccccc--hhhhhhhhhcc------cc
Confidence            1   2233445667899999999988 78899999999999999999999999975310  00000000000      00


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...... .........+.+++.+|++.||++||++.+++++
T Consensus       218 ~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~  257 (260)
T PF00069_consen  218 PLPSSS-QQSREKSEELRDLIKKMLSKDPEQRPSAEELLKH  257 (260)
T ss_dssp             HHHHHT-TSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTS
T ss_pred             cccccc-cccchhHHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            000000 0000112678888999999999999999999865

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=1.9e-35  Score=319.31  Aligned_cols=257  Identities=23%  Similarity=0.277  Sum_probs=195.6

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||+||++..+ +++.||+|++.....       ........+.+|+.++..++|++|+++++++.+..
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   74 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEM-------LKRAETACFREERDVLVNGDNQWITTLHYAFQDEN   74 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHH-------HHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC
Confidence            5778889999999999999665 578899999843211       11223455888999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.+....+++..+..++.|++.|++|||+   ++|+||||||+||+++.++.+||+|||++..
T Consensus        75 ~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~---~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~  151 (332)
T cd05623          75 NLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSCLK  151 (332)
T ss_pred             EEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEeecchhee
Confidence            9999999999999999998755578999999999999999999999   9999999999999999999999999999875


Q ss_pred             hhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ....  .........||+.|+|||++.     ...++.++|||||||++|||++|+.||....     ............
T Consensus       152 ~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~-----~~~~~~~i~~~~  224 (332)
T cd05623         152 LMED--GTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES-----LVETYGKIMNHK  224 (332)
T ss_pred             cccC--CcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCC-----HHHHHHHHhCCC
Confidence            5321  122233457999999999885     3467899999999999999999999997531     111111111100


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCC--CCCCCCCHHHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSK--SPATRPTMNEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~--dP~~Rps~~evl~~  806 (840)
                      .      ....+.........+.+++.+|+..  ++..|+++.|++++
T Consensus       225 ~------~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         225 E------RFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             c------cccCCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            0      0011111222334556667777754  44447899999988

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=3.5e-35  Score=308.20  Aligned_cols=256  Identities=24%  Similarity=0.338  Sum_probs=199.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||.||+|...+    ...||||.......         ....+.+.+|+.+++++.||||+++++++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~---------~~~~~~~~~e~~~l~~~~h~~i~~~~~~~   76 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS---------PSVREKFLQEAYIMRQFDHPHIVKLIGVI   76 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC---------HHHHHHHHHHHHHHHhCCCCchhceeEEE
Confidence            346778899999999999996543    24689998743321         23456788999999999999999999988


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+ ...++||||+++|+|.+++......+++..+..++.+++.|++|||+   .+++||||||+||+++.++.++++|||
T Consensus        77 ~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g  152 (270)
T cd05056          77 TE-NPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLES---KRFVHRDIAARNVLVSSPDCVKLGDFG  152 (270)
T ss_pred             cC-CCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccChheEEEecCCCeEEccCc
Confidence            75 45689999999999999998765568999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++.....  .........++..|+|||.+....++.++||||||+++||+++ |+.||.....  .....+..    ..
T Consensus       153 ~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~--~~~~~~~~----~~  224 (270)
T cd05056         153 LSRYLEDE--SYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN--NDVIGRIE----NG  224 (270)
T ss_pred             eeeecccc--cceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHH----cC
Confidence            98765432  1111222334568999999988889999999999999999996 9999975321  11111110    00


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      .      .....+   .....+.+++.+|+..+|++|||+.++++.|+++.
T Consensus       225 ~------~~~~~~---~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~  266 (270)
T cd05056         225 E------RLPMPP---NCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDIL  266 (270)
T ss_pred             C------cCCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            0      001111   22346777888999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1.5e-35  Score=312.12  Aligned_cols=250  Identities=28%  Similarity=0.386  Sum_probs=199.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..+.||+|+||.||+|.. .+++.||+|.+.....         ....+.+.+|++++++++||||+++++++...
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   74 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEA---------EDEIEDIQQEITVLSQCDSPYITRYYGSYLKG   74 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccc---------hHHHHHHHHHHHHHHcCCCCccHhhhcccccC
Confidence            4566677899999999999954 4688999998743221         22346789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|.+++...  .+++..+..++.|++.|+.|||+   ++++|+||+|+||++++++.++++|||++.
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~---~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~  149 (277)
T cd06642          75 TKLWIIMEYLGGGSALDLLKPG--PLEETYIATILREILKGLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAG  149 (277)
T ss_pred             CceEEEEEccCCCcHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhc---CCeeccCCChheEEEeCCCCEEEccccccc
Confidence            9999999999999999998764  58899999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........|+..|+|||++.+..++.++||||||+++|||++|+.|+.......  ...+    .      .
T Consensus       150 ~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--~~~~----~------~  214 (277)
T cd06642         150 QLTDT---QIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR--VLFL----I------P  214 (277)
T ss_pred             cccCc---chhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh--HHhh----h------h
Confidence            65331   122233467889999999998889999999999999999999999986432111  0000    0      0


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ......+.   ......+.+++.+|++.+|++||++.+++++-
T Consensus       215 ~~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  254 (277)
T cd06642         215 KNSPPTLE---GQYSKPFKEFVEACLNKDPRFRPTAKELLKHK  254 (277)
T ss_pred             cCCCCCCC---cccCHHHHHHHHHHccCCcccCcCHHHHHHhH
Confidence            00011111   12345577888899999999999999999863

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=3.8e-35  Score=314.80  Aligned_cols=259  Identities=25%  Similarity=0.333  Sum_probs=199.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC--------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN--------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~  596 (840)
                      ++|...+.||+|+||.||+|...        .+..||+|.+....         .......+..|+.+++++ .||||++
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~---------~~~~~~~~~~E~~~l~~l~~h~~iv~   82 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNA---------TDKDLADLISEMELMKLIGKHKNIIN   82 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCC---------ChHHHHHHHHHHHHHHhccCCCCeee
Confidence            46778899999999999998542        24578999874321         122345688899999999 6999999


Q ss_pred             eeeEEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          597 LYCYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      +++++......++||||+++|+|.+++....               ..++|.++..++.|++.||+|||+   ++++|||
T Consensus        83 ~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi~H~d  159 (314)
T cd05099          83 LLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES---RRCIHRD  159 (314)
T ss_pred             EEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHH---CCeeecc
Confidence            9999999889999999999999999996531               348899999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+||++++++.+||+|||.++........ .......++..|+|||++.+..++.++||||||+++|||++ |..||.
T Consensus       160 lkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~  238 (314)
T cd05099         160 LAARNVLVTEDNVMKIADFGLARGVHDIDYY-KKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYP  238 (314)
T ss_pred             ccceeEEEcCCCcEEEccccccccccccccc-cccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999765431111 11112234567999999988889999999999999999999 889986


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      ....  .   ........          ............++.+++.+|+..+|++||++.|+++.|+++..
T Consensus       239 ~~~~--~---~~~~~~~~----------~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~  295 (314)
T cd05099         239 GIPV--E---ELFKLLRE----------GHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLA  295 (314)
T ss_pred             CCCH--H---HHHHHHHc----------CCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence            4211  0   00100000          00000111223466778889999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.7e-35  Score=304.64  Aligned_cols=248  Identities=28%  Similarity=0.396  Sum_probs=200.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.|...+.||+|+||.||+|... |+.||||.+....           ...+.+.+|+.++++++|+|++++++++.+..
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~-----------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   73 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDS-----------TAAQAFLAEASVMTTLRHPNLVQLLGVVLQGN   73 (256)
T ss_pred             hhccceeeeecCCCceEEEEEec-CcEEEEEEeccch-----------hHHHHHHHHHHHHHhcCCcceeeeEEEEcCCC
Confidence            45677889999999999999876 8999999984332           13567889999999999999999999999888


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++.... ..+++..+..++.|++.|+.|||+   .+++||||||+||+++.++.++|+|||.++
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~Nili~~~~~~~l~d~g~~~  150 (256)
T cd05039          74 PLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAK  150 (256)
T ss_pred             CeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCccchhcccceEEEeCCCCEEEccccccc
Confidence            9999999999999999997653 368999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....      .....++..|+|||++.+..++.++||||||+++||+++ |+.||....  .......    ....   
T Consensus       151 ~~~~~------~~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~~~~~~----~~~~---  215 (256)
T cd05039         151 EASQG------QDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPH----VEKG---  215 (256)
T ss_pred             ccccc------cccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHH----HhcC---
Confidence            65321      112334568999999988889999999999999999997 999986421  0111000    0000   


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                         ......   ...+..+.+++.+|+..+|++||++.|+++.|..
T Consensus       216 ---~~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  255 (256)
T cd05039         216 ---YRMEAP---EGCPPEVYKVMKDCWELDPAKRPTFKQLREQLAL  255 (256)
T ss_pred             ---CCCCCc---cCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence               000111   1224567788889999999999999999999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=6.6e-36  Score=326.76  Aligned_cols=256  Identities=22%  Similarity=0.317  Sum_probs=194.7

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|+..+.||+|+||.||+|... +++.||||++.....       ........+.+|+.++..++|++|+++++++.+..
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~   74 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADM-------LEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKR   74 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHH-------hhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence            5677889999999999999654 689999999853211       11233567888999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~~L~~lH~---~givHrDLkp~NIli~~~~~vkL~DfG~~~~  150 (360)
T cd05627          75 NLYLIMEFLPGGDMMTLLMKKD-TLSEEATQFYIAETVLAIDAIHQ---LGFIHRDIKPDNLLLDAKGHVKLSDFGLCTG  150 (360)
T ss_pred             EEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEeeccCCcc
Confidence            9999999999999999997654 68999999999999999999999   9999999999999999999999999999875


Q ss_pred             hhccCCC--------------------------------CcceecccccccccCccccccCCCCccccchhHHHHHHHHH
Q 003199          686 LQARGGK--------------------------------DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELI  733 (840)
Q Consensus       686 ~~~~~~~--------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~  733 (840)
                      .......                                ........||+.|+|||++.+..++.++|||||||++|||+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~  230 (360)
T cd05627         151 LKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEML  230 (360)
T ss_pred             cccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecc
Confidence            4321000                                00112357999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC---HHHHHHH
Q 003199          734 TGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT---MNEVVQL  806 (840)
Q Consensus       734 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps---~~evl~~  806 (840)
                      +|+.||......    ..+.. ......    ..  ..++. .....++.+++.+|+ .||.+|++   +.|+++|
T Consensus       231 tG~~Pf~~~~~~----~~~~~-i~~~~~----~~--~~p~~-~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~h  293 (360)
T cd05627         231 IGYPPFCSETPQ----ETYRK-VMNWKE----TL--VFPPE-VPISEKAKDLILRFC-TDSENRIGSNGVEEIKSH  293 (360)
T ss_pred             cCCCCCCCCCHH----HHHHH-HHcCCC----ce--ecCCC-CCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhcC
Confidence            999999753211    00100 000000    00  01111 012234555666665 49999984   6787776

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=1.5e-35  Score=316.08  Aligned_cols=263  Identities=22%  Similarity=0.288  Sum_probs=196.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|+||.||+|... +++.||+|.+......         .....+.+|+.+++.++|+||+++++++...
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~---------~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~   76 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEE---------GAPCTAIREVSLLKDLKHANIVTLHDIIHTE   76 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEeccccc---------CchhHHHHHHHHHHhcCCCCcceEEEEEecC
Confidence            56788899999999999999654 6899999988533211         1123467899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||++ ++|.+++......+++..+..++.|++.||+|||+   .+++||||||+||++++++.++|+|||++.
T Consensus        77 ~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  152 (301)
T cd07873          77 KSLTLVFEYLD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHR---RKVLHRDLKPQNLLINERGELKLADFGLAR  152 (301)
T ss_pred             CeEEEEEeccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHHHEEECCCCcEEECcCcchh
Confidence            99999999996 69999887765578999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh--cccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV--DTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~--~~~~  761 (840)
                      .....   ........+++.|+|||.+.+. .++.++|||||||++|||++|+.||......  ..........  ....
T Consensus       153 ~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~--~~~~~~~~~~~~~~~~  227 (301)
T cd07873         153 AKSIP---TKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVE--EQLHFIFRILGTPTEE  227 (301)
T ss_pred             ccCCC---CCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHcCCCChh
Confidence            64321   1122334578899999987654 5788999999999999999999999753211  0000000000  0000


Q ss_pred             chhhh---------cccccCCCc-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEV---------LDKKLSGSF-----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~---------~~~~~~~~~-----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .....         ..+......     ......+.+++.+|++.||.+|||++|++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h  286 (301)
T cd07873         228 TWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKH  286 (301)
T ss_pred             hchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            00000         000000000     1123456788889999999999999999985

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.4e-35  Score=342.64  Aligned_cols=256  Identities=22%  Similarity=0.328  Sum_probs=194.6

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ...+|...+.||+|+||+||+|... ++..||+|.+......        ......+..|+.+++.++|||||+++++|.
T Consensus        11 ~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~--------e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~   82 (1021)
T PTZ00266         11 RLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLK--------EREKSQLVIEVNVMRELKHKNIVRYIDRFL   82 (1021)
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccC--------HHHHHHHHHHHHHHHHcCCCCcCeEEEEEE
Confidence            3467888999999999999999554 6788999988533211        223467889999999999999999999885


Q ss_pred             c--CccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcC----CCCeEecCCCCCCEEEcCC-
Q 003199          603 S--LYCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGL----LSPIIHRDIKSTNILLDVN-  672 (840)
Q Consensus       603 ~--~~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~----~~~ivH~Dlk~~Nill~~~-  672 (840)
                      .  ....++||||+++|+|.+++...   ...+++..++.|+.||+.||+|||+..    ..+||||||||+|||++.+ 
T Consensus        83 de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~  162 (1021)
T PTZ00266         83 NKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGI  162 (1021)
T ss_pred             ecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCc
Confidence            4  45679999999999999998753   236899999999999999999999832    1359999999999999642 


Q ss_pred             ----------------CCCeeecccchhhhhccCCCCcceecccccccccCcccccc--CCCCccccchhHHHHHHHHHh
Q 003199          673 ----------------YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELIT  734 (840)
Q Consensus       673 ----------------~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~t  734 (840)
                                      +.+||+|||++..+..    ........||+.|+|||++.+  ..++.++|||||||++|||++
T Consensus       163 ~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~----~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLT  238 (1021)
T PTZ00266        163 RHIGKITAQANNLNGRPIAKIGDFGLSKNIGI----ESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCS  238 (1021)
T ss_pred             cccccccccccccCCCCceEEccCCccccccc----cccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHH
Confidence                            3489999999976532    122234579999999998854  458899999999999999999


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          735 GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       735 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      |+.||.....    ....... ....        +.+.  .......+.+++.+||+.+|.+||++.|++++
T Consensus       239 Gk~PF~~~~~----~~qli~~-lk~~--------p~lp--i~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h  295 (1021)
T PTZ00266        239 GKTPFHKANN----FSQLISE-LKRG--------PDLP--IKGKSKELNILIKNLLNLSAKERPSALQCLGY  295 (1021)
T ss_pred             CCCCCCcCCc----HHHHHHH-HhcC--------CCCC--cCCCCHHHHHHHHHHhcCChhHCcCHHHHhcc
Confidence            9999964311    1111110 0000        0010  11123567788889999999999999999854

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.5e-35  Score=324.63  Aligned_cols=262  Identities=23%  Similarity=0.279  Sum_probs=196.4

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.++|...+.||+|+||.||+|.. .+++.||||++.....        .....+.+.+|+.+++.++||||+++++++
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~   92 (364)
T cd07875          21 TVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ--------NQTHAKRAYRELVLMKCVNHKNIIGLLNVF   92 (364)
T ss_pred             chhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCcccc--------CchhHHHHHHHHHHHHhcCCCCccccceee
Confidence            4567899999999999999999954 4789999999854321        122345677899999999999999999887


Q ss_pred             ecC------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          602 SSL------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       602 ~~~------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      ...      ...++||||++ +++.+.+..   .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+
T Consensus        93 ~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~  165 (364)
T cd07875          93 TPQKSLEEFQDVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTL  165 (364)
T ss_pred             cccccccccCeEEEEEeCCC-CCHHHHHHh---cCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEECCCCcE
Confidence            543      35689999996 477777754   47899999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|||+++....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.....    ...+...
T Consensus       166 kL~DfG~a~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~----~~~~~~~  237 (364)
T cd07875         166 KILDFGLARTAGT----SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH----IDQWNKV  237 (364)
T ss_pred             EEEeCCCccccCC----CCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCH----HHHHHHH
Confidence            9999999976532    2223345789999999999999999999999999999999999999975321    1111110


Q ss_pred             hhcccc-----------chhh---------------hcccccC----CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 003199          756 KVDTKE-----------GIME---------------VLDKKLS----GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ  805 (840)
Q Consensus       756 ~~~~~~-----------~~~~---------------~~~~~~~----~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~  805 (840)
                      ......           ....               .......    .........+.+++.+|++.||.+|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~  317 (364)
T cd07875         238 IEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  317 (364)
T ss_pred             HHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            000000           0000               0000000    000011245778999999999999999999998


Q ss_pred             Hh
Q 003199          806 LL  807 (840)
Q Consensus       806 ~L  807 (840)
                      +=
T Consensus       318 hp  319 (364)
T cd07875         318 HP  319 (364)
T ss_pred             Cc
Confidence            73

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.7e-35  Score=313.41  Aligned_cols=264  Identities=23%  Similarity=0.296  Sum_probs=195.5

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|++|.||+|... +|+.||||++......        ....+.+.+|+.++++++|||++++++++.++.
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   72 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEE--------EGVPSTAIREISLLKELQHPNIVCLQDVLMQES   72 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEecccccc--------CCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCC
Confidence            3667789999999999999654 7899999988543211        122356778999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ..++||||++ ++|.+++....  ..+++..+..++.|++.||+|||+   .+++||||||+||++++++.++|+|||++
T Consensus        73 ~~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~  148 (285)
T cd07861          73 RLYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHS---RRVLHRDLKPQNLLIDNKGVIKLADFGLA  148 (285)
T ss_pred             eEEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEEcCCCcEEECcccce
Confidence            9999999997 68888886532  468999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc----
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD----  758 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~----  758 (840)
                      ......   ........+++.|+|||++.+. .++.++||||||+++|||+||+.||........ ..........    
T Consensus       149 ~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~-~~~~~~~~~~~~~~  224 (285)
T cd07861         149 RAFGIP---VRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQ-LFRIFRILGTPTED  224 (285)
T ss_pred             eecCCC---cccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHhCCCChh
Confidence            755321   1222334578899999987654 578999999999999999999999975321100 0000000000    


Q ss_pred             ------cccchhhhcccccC----CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 ------TKEGIMEVLDKKLS----GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ------~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            .........+....    ........++.+++.+|++.||++|||+.+++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~  282 (285)
T cd07861         225 VWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNH  282 (285)
T ss_pred             hhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcC
Confidence                  00000000000000    0011123456788889999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=2.9e-35  Score=316.65  Aligned_cols=196  Identities=25%  Similarity=0.401  Sum_probs=158.6

Q ss_pred             cCeeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec--Cc
Q 003199          531 KNKVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS--LY  605 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~  605 (840)
                      ..+||+|+||+||+|...   ++..||+|.+.....            ...+.+|++++++++||||+++++++..  ..
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~------------~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   73 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI------------SMSACREIALLRELKHPNVIALQKVFLSHSDR   73 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC------------cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCC
Confidence            357999999999999765   457899998843221            2346789999999999999999998843  55


Q ss_pred             cceEEEeecCCCChHHHhhcC--------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE----cCCC
Q 003199          606 CNLLVYEYMPNGNLWDALHKG--------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL----DVNY  673 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill----~~~~  673 (840)
                      ..++|+||++ ++|.+++...        ...+++..+..++.|++.||+|||+   .+|+||||||+||++    +.++
T Consensus        74 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~  149 (317)
T cd07867          74 KVWLLFDYAE-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERG  149 (317)
T ss_pred             eEEEEEeeeC-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEccCCCCCC
Confidence            6789999996 5777776421        1357899999999999999999999   999999999999999    5667


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCC
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDD  742 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~  742 (840)
                      .+||+|||+++................||+.|+|||++.+ ..++.++|||||||++|||+||+.||...
T Consensus       150 ~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         150 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             cEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccc
Confidence            8999999999876432222222344578999999998876 45799999999999999999999999753

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.9e-35  Score=307.99  Aligned_cols=257  Identities=25%  Similarity=0.354  Sum_probs=201.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc----EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE----VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      .+|...+.||+|+||.||+|..+ +|.    .||+|.+.....         ......+.+|+.++++++|+|+++++++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~i~~~~~~   77 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS---------PKANKEILDEAYVMASVDHPHVVRLLGI   77 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC---------HHHHHHHHHHHHHHHhCCCCCcceEEEE
Confidence            46778889999999999999654 343    588898743321         3345678899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +.. ...++||||+++|+|.+++......+++..+..++.|++.|++|||+   .+++||||||+||++++++.+||+||
T Consensus        78 ~~~-~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~di~p~nil~~~~~~~kL~df  153 (279)
T cd05057          78 CLS-SQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEE---KRLVHRDLAARNVLVKTPQHVKITDF  153 (279)
T ss_pred             Eec-CceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecccCcceEEEcCCCeEEECCC
Confidence            987 77899999999999999998766578999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |.++...... .........++..|+|||.+....++.++||||||+++||+++ |+.||.....     ..+.....  
T Consensus       154 g~~~~~~~~~-~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~--  225 (279)
T cd05057         154 GLAKLLDVDE-KEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA-----VEIPDLLE--  225 (279)
T ss_pred             cccccccCcc-cceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH-----HHHHHHHh--
Confidence            9998764311 1111112224568999999988889999999999999999998 9999975311     11111100  


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                              ..............+.+++.+||..+|.+||++.++++.|.++.
T Consensus       226 --------~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~  269 (279)
T cd05057         226 --------KGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMA  269 (279)
T ss_pred             --------CCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence                    00000111112345678888999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=5.1e-35  Score=309.00  Aligned_cols=251  Identities=24%  Similarity=0.302  Sum_probs=195.8

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|+||.||+|... ++..+|+|.+....          ....+.+.+|+++++.++|||++++++++.....
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~----------~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~   76 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS----------EEELEDYMVEIDILASCDHPNIVKLLDAFYYENN   76 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCC----------HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCE
Confidence            566778999999999999665 57888999873221          2234668889999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++|+||+++++|..++......+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||++...
T Consensus        77 ~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~  153 (282)
T cd06643          77 LWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKN  153 (282)
T ss_pred             EEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEccCCCEEEccccccccc
Confidence            999999999999999887655578999999999999999999999   99999999999999999999999999998764


Q ss_pred             hccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ...   ........++..|+|||++.     +..++.++|||||||++|||++|+.||..... ....   ... .... 
T Consensus       154 ~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~-~~~~---~~~-~~~~-  224 (282)
T cd06643         154 TRT---IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNP-MRVL---LKI-AKSE-  224 (282)
T ss_pred             ccc---ccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCH-HHHH---HHH-hhcC-
Confidence            321   12223456889999999874     34577899999999999999999999865311 0000   000 0000 


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                            .... .........+.+++.+||+.||.+||++.+++++-
T Consensus       225 ------~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  263 (282)
T cd06643         225 ------PPTL-AQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHP  263 (282)
T ss_pred             ------CCCC-CCccccCHHHHHHHHHHccCChhhCcCHHHHhcCC
Confidence                  0000 00111234567788899999999999999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=5e-35  Score=304.49  Aligned_cols=250  Identities=28%  Similarity=0.365  Sum_probs=201.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|... +++.||+|.+....            ..+.+.+|++++++++|+|++++++++.+.
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~------------~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~   70 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE------------DLQEIIKEISILKQCDSPYIVKYYGSYFKN   70 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH------------HHHHHHHHHHHHHhCCCCcEeeeeeeeecC
Confidence            45777889999999999999776 47899999873221            156789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++++||+++++|.+++......+++..+..++.|++.|+.|||+   .+++||||+|+||+++.++.++|+|||++.
T Consensus        71 ~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~  147 (256)
T cd06612          71 TDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVSG  147 (256)
T ss_pred             CcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEECCCCcEEEcccccch
Confidence            99999999999999999998766678999999999999999999999   899999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........++..|+|||++.+..++.++||||||+++|||++|+.||........    ....        .
T Consensus       148 ~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~----~~~~--------~  212 (256)
T cd06612         148 QLTDT---MAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRA----IFMI--------P  212 (256)
T ss_pred             hcccC---ccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhh----hhhh--------c
Confidence            76432   1123345588899999999888999999999999999999999999975321110    0000        0


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....... .........+.+++.+|++.||++|||+.|++++
T Consensus       213 ~~~~~~~-~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~~  253 (256)
T cd06612         213 NKPPPTL-SDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQH  253 (256)
T ss_pred             cCCCCCC-CchhhcCHHHHHHHHHHHhcChhhCcCHHHHhcC
Confidence            0000000 0111223457778889999999999999999874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=3.2e-35  Score=312.25  Aligned_cols=250  Identities=25%  Similarity=0.372  Sum_probs=199.5

Q ss_pred             HhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||.|++|.||+|. ..+|+.||+|.+....          ....+.+.+|+++++.++|+|++++++++...
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~----------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   88 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQK----------QPKKELIINEILVMKELKNPNIVNFLDSFLVG   88 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEeccc----------CchHHHHHHHHHHHHhcCCCceeeeeeeEecC
Confidence            457788899999999999985 4679999999884322          11245678899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++|+||+++++|.+++...  .+++.++..++.+++.|++|||+   .+++||||||+||+++.++.+||+|||++.
T Consensus        89 ~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~l~~al~~LH~---~~i~H~dL~p~Nili~~~~~~kl~dfg~~~  163 (296)
T cd06655          89 DELFVVMEYLAGGSLTDVVTET--CMDEAQIAAVCRECLQALEFLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFCA  163 (296)
T ss_pred             ceEEEEEEecCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccch
Confidence            9999999999999999998764  58999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........++..|+|||.+.+..++.++|||||||++|+|++|+.||........ .   .......     
T Consensus       164 ~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~-~---~~~~~~~-----  231 (296)
T cd06655         164 QITPE---QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA-L---YLIATNG-----  231 (296)
T ss_pred             hcccc---cccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-H---HHHHhcC-----
Confidence            65331   1122345688999999999888899999999999999999999999975321100 0   0000000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                          .............+.+++.+||..||.+||++.+++++
T Consensus       232 ----~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~  269 (296)
T cd06655         232 ----TPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQH  269 (296)
T ss_pred             ----CcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence                00000111223456678889999999999999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=3.9e-35  Score=313.02  Aligned_cols=257  Identities=25%  Similarity=0.353  Sum_probs=198.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc----EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE----VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|...+.||+|+||.||+|... +|+    .||+|.+....         .......+.+|+.+++.++||||++++++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~e~~~~~~l~h~niv~~~~~   77 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT---------GPKANVEFMDEALIMASMDHPHLVRLLGV   77 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccC---------CHHHHHHHHHHHHHHHhCCCCCcccEEEE
Confidence            45677889999999999999653 454    46888774321         12233468899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +... ..++|+||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+||
T Consensus        78 ~~~~-~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dikp~Nill~~~~~~kL~Df  153 (303)
T cd05110          78 CLSP-TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAARNVLVKSPNHVKITDF  153 (303)
T ss_pred             EcCC-CceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhh---cCeeccccccceeeecCCCceEEccc
Confidence            8754 4679999999999999998766578999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+++...... .........++..|+|||++.+..++.++||||||+++|||++ |+.||.+..  ......+..    .
T Consensus       154 g~~~~~~~~~-~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~--~~~~~~~~~----~  226 (303)
T cd05110         154 GLARLLEGDE-KEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP--TREIPDLLE----K  226 (303)
T ss_pred             cccccccCcc-cccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH----C
Confidence            9998764321 1111223345678999999988899999999999999999997 999986531  111111110    0


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ..         ..+........+.+++.+||..+|++||+++++++.|+++.
T Consensus       227 ~~---------~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~  269 (303)
T cd05110         227 GE---------RLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMA  269 (303)
T ss_pred             CC---------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            00         00011112346778888999999999999999999998753

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=2.8e-35  Score=309.42  Aligned_cols=252  Identities=25%  Similarity=0.339  Sum_probs=194.2

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      ....|+..+.||+|+||.||+|.. .+++.||+|++....           .....+..|+.++.++ +|+|++++++++
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-----------~~~~~~~~e~~~l~~~~~h~~i~~~~~~~   72 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-----------DEEEEIKQEINMLKKYSHHRNIATYYGAF   72 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-----------ccHHHHHHHHHHHHHhcCCCCeeeEeeEE
Confidence            345677788899999999999965 468899999884322           1134577899999998 699999999998


Q ss_pred             ecC------ccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          602 SSL------YCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       602 ~~~------~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      ...      ...++||||+++++|.+++... ...+++..+..++.|++.|++|||+   ++|+||||||+||++++++.
T Consensus        73 ~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~---~~ivh~dl~~~nili~~~~~  149 (272)
T cd06637          73 IKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAE  149 (272)
T ss_pred             eecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHEEECCCCC
Confidence            653      4578999999999999998864 3468999999999999999999999   99999999999999999999


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcch
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI  749 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~  749 (840)
                      ++|+|||++.....   .........|+..|+|||++.     +..++.++|||||||++|||++|+.||.....    .
T Consensus       150 ~~l~Dfg~~~~~~~---~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~----~  222 (272)
T cd06637         150 VKLVDFGVSAQLDR---TVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP----M  222 (272)
T ss_pred             EEEccCCCceeccc---ccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCH----H
Confidence            99999999876532   112234467899999999885     34578899999999999999999999864311    1


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ......  . ..    ........   .....+.+++.+||..+|.+|||+.+++++
T Consensus       223 ~~~~~~--~-~~----~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  269 (272)
T cd06637         223 RALFLI--P-RN----PAPRLKSK---KWSKKFQSFIESCLVKNHSQRPTTEQLMKH  269 (272)
T ss_pred             HHHHHH--h-cC----CCCCCCCC---CcCHHHHHHHHHHcCCChhhCCCHHHHhhC
Confidence            111000  0 00    00000111   123456778889999999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1.3e-34  Score=303.75  Aligned_cols=253  Identities=25%  Similarity=0.361  Sum_probs=187.9

Q ss_pred             CeeeccCCcEEEEEEeCC---CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccce
Q 003199          532 NKVGQGGSGTVYKIDLNS---GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  608 (840)
                      +.||+|+||.||+|...+   +..+|+|.+.....         ......+.+|+.++++++||||+++++++.+....+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~---------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   71 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS---------VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYL   71 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCC---------hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcE
Confidence            368999999999996543   45789998743321         223456888999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHhhcCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          609 LVYEYMPNGNLWDALHKGL----VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +||||+++|+|.+++....    ...++..+..++.|++.|++|||+   .+++||||||+||+++.++++|++|||.++
T Consensus        72 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dlkp~nil~~~~~~~kL~dfg~~~  148 (269)
T cd05087          72 LVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK---NNFIHSDLALRNCLLTADLTVKIGDYGLSH  148 (269)
T ss_pred             EEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEECCccccc
Confidence            9999999999999997532    246778888999999999999999   999999999999999999999999999986


Q ss_pred             hhhccCCCCcceecccccccccCccccccC-------CCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSS-------KATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-------~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      ..... ..........++..|+|||++.+.       .++.++||||||+++|||++ |+.||......  .....   .
T Consensus       149 ~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~--~~~~~---~  222 (269)
T cd05087         149 NKYKE-DYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDE--QVLTY---T  222 (269)
T ss_pred             cccCc-ceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChH--HHHHH---H
Confidence            54321 111122334577889999987542       35789999999999999996 99999653211  11000   0


Q ss_pred             hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .  .........+......   ...+.+++..|+ .+|++|||++||++.|+
T Consensus       223 ~--~~~~~~~~~~~~~~~~---~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         223 V--REQQLKLPKPRLKLPL---SDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             h--hcccCCCCCCccCCCC---ChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            0  0001111112222122   233556777898 68999999999998875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=3.9e-35  Score=305.30  Aligned_cols=251  Identities=24%  Similarity=0.355  Sum_probs=200.0

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||++.. .+|+.||+|++......        ....+.+.+|+.++++++|+||+++++++.+..
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMS--------PKEREESRKEVAVLSNMKHPNIVQYQESFEENG   72 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCC--------hHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCC
Confidence            367788999999999999854 57899999998543211        223457889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++|+||+++++|.+++... ...+++.++..++.|++.|++|||+   .+++|+||+|+||+++.++.++++|||++.
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~l~~~nil~~~~~~~~l~d~~~~~  149 (256)
T cd08218          73 NLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTIKLGDFGIAR  149 (256)
T ss_pred             eEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEEeecccee
Confidence            999999999999999998764 2357899999999999999999999   899999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........|++.|+|||++.+..++.++||||||+++|+|++|+.||....     .....          .
T Consensus       150 ~~~~~---~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~-----~~~~~----------~  211 (256)
T cd08218         150 VLNST---VELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGN-----MKNLV----------L  211 (256)
T ss_pred             ecCcc---hhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCC-----HHHHH----------H
Confidence            65321   112223457889999999988889999999999999999999999986421     11111          1


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .................+.+++.+|++.+|++||++.+|+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         212 KIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             HHhcCCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            111111111112234567788889999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=5.5e-35  Score=312.50  Aligned_cols=263  Identities=26%  Similarity=0.365  Sum_probs=200.5

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||+|... ++..||+|.+....         .......+.+|++++++++||||+++++++.+.+
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   72 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI---------KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDG   72 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc---------CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC
Confidence            5778889999999999999654 68889999874321         1223456888999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++.... .+++..+..++.|+++||+|||+.  .+++||||||+||+++.++.+||+|||++..
T Consensus        73 ~~~lv~ey~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (308)
T cd06615          73 EISICMEHMDGGSLDQVLKKAG-RIPENILGKISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  149 (308)
T ss_pred             EEEEEeeccCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhh--CCEEECCCChHHEEEecCCcEEEccCCCccc
Confidence            9999999999999999998763 689999999999999999999972  4899999999999999999999999999875


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc----
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE----  761 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~----  761 (840)
                      ....     ......|+..|+|||.+.+..++.++||||||+++|||++|+.||.....  .....+.........    
T Consensus       150 ~~~~-----~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~  222 (308)
T cd06615         150 LIDS-----MANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDA--KELEAMFGRPVSEGEAKES  222 (308)
T ss_pred             cccc-----ccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcch--hhHHHhhcCccccccccCC
Confidence            4321     22345688999999998888899999999999999999999999864321  111111100000000    


Q ss_pred             ---------------chhhhccc---ccCCCc--HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          762 ---------------GIMEVLDK---KLSGSF--RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       762 ---------------~~~~~~~~---~~~~~~--~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                                     ...+..+.   ...+..  .....++.+++.+|+..+|++||++.+++++-.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~  289 (308)
T cd06615         223 HRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPF  289 (308)
T ss_pred             cccccCCCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcChh
Confidence                           00000000   000000  012345778999999999999999999998854

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=9e-35  Score=306.18  Aligned_cols=249  Identities=27%  Similarity=0.376  Sum_probs=201.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..+.||.|+||.||+|... +++.||+|++.....         ....+.+.+|+++++++.|+|++++++++.+.
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   74 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA---------EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKG   74 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEecccc---------HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC
Confidence            45667788999999999999654 689999998843221         23356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++...  .+++..+..++.|++.|++|+|+   .+++|+||+|+||+++.++.++++|||++.
T Consensus        75 ~~~~lv~e~~~~~~L~~~i~~~--~l~~~~~~~~~~~l~~~l~~lh~---~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~  149 (277)
T cd06640          75 TKLWIIMEYLGGGSALDLLRAG--PFDEFQIATMLKEILKGLDYLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVAG  149 (277)
T ss_pred             CEEEEEEecCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCccCcCCChhhEEEcCCCCEEEcccccce
Confidence            9999999999999999998764  57889999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....   .........++..|+|||++.+..++.++||||||+++|||++|+.||.......  .   .           
T Consensus       150 ~~~~---~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--~---~-----------  210 (277)
T cd06640         150 QLTD---TQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMR--V---L-----------  210 (277)
T ss_pred             eccC---CccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHh--H---h-----------
Confidence            6532   1222234567889999999988889999999999999999999999987532110  0   0           


Q ss_pred             hhcccc-cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          765 EVLDKK-LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       765 ~~~~~~-~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ...... ...........+.+++.+||+.+|++||++.+++++-
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  254 (277)
T cd06640         211 FLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKHK  254 (277)
T ss_pred             hhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhCh
Confidence            000011 1111233456678899999999999999999998874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=5.4e-35  Score=309.09  Aligned_cols=262  Identities=27%  Similarity=0.384  Sum_probs=205.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|... +|+.||+|++....         .....+.+.+|+++++.++||||+++++++...
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   75 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGA---------KSSVRKQILRELQIMHECRSPYIVSFYGAFLNE   75 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecC---------cchHHHHHHHHHHHHHHcCCCCcceEeeeEecC
Confidence            45667789999999999998654 68999999874322         123356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|.+++.... .+++..+..++.+++.|+.|||+.  ++++||||+|+||+++.++.++|+|||++.
T Consensus        76 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~~  152 (284)
T cd06620          76 NNICMCMEFMDCGSLDRIYKKGG-PIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVSG  152 (284)
T ss_pred             CEEEEEEecCCCCCHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCCcEEEccCCccc
Confidence            99999999999999999987754 689999999999999999999963  589999999999999999999999999986


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCc------chhhhhhhhhc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK------NIIYWVSIKVD  758 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~------~~~~~~~~~~~  758 (840)
                      .....     ......|+..|+|||++.+..++.++|||||||++||+++|+.||........      ....+.     
T Consensus       153 ~~~~~-----~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~-----  222 (284)
T cd06620         153 ELINS-----IADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLL-----  222 (284)
T ss_pred             chhhh-----ccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHH-----
Confidence            54221     12245689999999999888899999999999999999999999975432110      000111     


Q ss_pred             cccchhhhcccccCCC-cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCC
Q 003199          759 TKEGIMEVLDKKLSGS-FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR  814 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~  814 (840)
                           ........... ..+....+.+++.+|++.||++||++.|++++..-+...+
T Consensus       223 -----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~~~~  274 (284)
T cd06620         223 -----QQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQALR  274 (284)
T ss_pred             -----HHHhhccCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccccc
Confidence                 01111111110 1123456778888999999999999999999865444443

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=4.5e-35  Score=316.01  Aligned_cols=264  Identities=20%  Similarity=0.254  Sum_probs=192.8

Q ss_pred             cCeeecc--CCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccc
Q 003199          531 KNKVGQG--GSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       531 ~~~lg~G--~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  607 (840)
                      .++||+|  +||+||++.. .+|+.||||++.....        .....+.+.+|+++++.++||||+++++++..++..
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~   74 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEAC--------TNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL   74 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhc--------cHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEE
Confidence            4579999  7789999854 5799999999843321        123355678899999999999999999999999999


Q ss_pred             eEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          608 LLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      ++||||+++|+|.+++... ...+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.++++|||.+...
T Consensus        75 ~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~  151 (327)
T cd08227          75 WVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLSM  151 (327)
T ss_pred             EEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCChhhEEEecCCcEEEcccchhhcc
Confidence            9999999999999998654 2358999999999999999999999   99999999999999999999999999876443


Q ss_pred             hccCCCC----cceecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc-
Q 003199          687 QARGGKD----STTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT-  759 (840)
Q Consensus       687 ~~~~~~~----~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-  759 (840)
                      ...+...    .......++..|+|||++.+  ..++.++|||||||++|||++|+.||........ ........... 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~~~~~~~~~~  230 (327)
T cd08227         152 INHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQM-LLEKLNGTVPCL  230 (327)
T ss_pred             ccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHH-HHHHhcCCcccc
Confidence            2211110    01122356778999999876  4588999999999999999999999975321100 00000000000 


Q ss_pred             -------ccch-----hhhccc----------c--------cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 -------KEGI-----MEVLDK----------K--------LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 -------~~~~-----~~~~~~----------~--------~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                             .+..     ....+.          .        ..+........+.+++.+|++.||++|||++|++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~  307 (327)
T cd08227         231 LDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  307 (327)
T ss_pred             ccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcC
Confidence                   0000     000000          0        000011234567889999999999999999999976

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.5e-35  Score=303.92  Aligned_cols=254  Identities=28%  Similarity=0.352  Sum_probs=201.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||.|+||.||+|.. .+++.+|+|.+....          ....+.+.+|++++++++|||++++++++.+.
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~----------~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~   72 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEP----------GDDFEIIQQEISMLKECRHPNIVAYFGSYLRR   72 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCc----------hhhHHHHHHHHHHHHhCCCCChhceEEEEEeC
Confidence            4577888999999999999965 467899999985332          11346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...+++|||+++++|.+++......+++.++..++.|++.|++|||+   .+++|+||+|+||+++.++.++|+|||.+.
T Consensus        73 ~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~  149 (262)
T cd06613          73 DKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSA  149 (262)
T ss_pred             CEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHh---CCceecCCChhhEEECCCCCEEECccccch
Confidence            99999999999999999988764578999999999999999999999   899999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccC---CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSS---KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      .....   ........++..|+|||.+.+.   .++.++||||||+++|||++|+.||....... ..   ....   . 
T Consensus       150 ~~~~~---~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~-~~---~~~~---~-  218 (262)
T cd06613         150 QLTAT---IAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMR-AL---FLIS---K-  218 (262)
T ss_pred             hhhhh---hhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHH-HH---HHHH---h-
Confidence            65431   1122345688899999998776   78999999999999999999999996531100 00   0000   0 


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         .................+.+++.+||..+|.+||++.+++++
T Consensus       219 ---~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  260 (262)
T cd06613         219 ---SNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQH  260 (262)
T ss_pred             ---ccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence               000000001112334567889999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=5.7e-35  Score=306.73  Aligned_cols=239  Identities=20%  Similarity=0.288  Sum_probs=185.0

Q ss_pred             eeeccCCcEEEEEEeCC-------------------------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHh
Q 003199          533 KVGQGGSGTVYKIDLNS-------------------------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG  587 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~~-------------------------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~  587 (840)
                      .||+|+||.||+|....                         ...||+|++...          .......+.+|+.+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~----------~~~~~~~~~~~~~~~~   71 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPS----------HRDIALAFFETASLMS   71 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChH----------HHHHHHHHHHHHHHHh
Confidence            59999999999986421                         134888877322          1233467888999999


Q ss_pred             ccCCCCcceeeeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCE
Q 003199          588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNI  667 (840)
Q Consensus       588 ~l~h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Ni  667 (840)
                      .++||||+++++++.+....++||||+++|+|..++......+++..+..++.|+++||+|||+   ++|+||||||+||
T Consensus        72 ~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~Ni  148 (274)
T cd05076          72 QVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLED---KNLVHGNVCAKNI  148 (274)
T ss_pred             cCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHc---CCccCCCCCcccE
Confidence            9999999999999999999999999999999999997655578999999999999999999999   9999999999999


Q ss_pred             EEcCCC-------CCeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHH-hCCCC
Q 003199          668 LLDVNY-------QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELI-TGRKP  738 (840)
Q Consensus       668 ll~~~~-------~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~-tg~~p  738 (840)
                      +++..+       .+|++|||.+.....       .....++..|+|||.+.+ ..++.++||||||+++|||+ +|+.|
T Consensus       149 ll~~~~~~~~~~~~~kl~d~g~~~~~~~-------~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p  221 (274)
T cd05076         149 LLARLGLAEGTSPFIKLSDPGVSFTALS-------REERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVP  221 (274)
T ss_pred             EEeccCcccCccceeeecCCcccccccc-------ccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            997643       379999998754322       122357788999998865 56899999999999999995 69999


Q ss_pred             CCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          739 VEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      |.......  ...+..    .        .......   ....+.+++.+||+.+|++||++.++++.|.
T Consensus       222 ~~~~~~~~--~~~~~~----~--------~~~~~~~---~~~~~~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         222 LKERTPSE--KERFYE----K--------KHRLPEP---SCKELATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             ccccChHH--HHHHHH----h--------ccCCCCC---CChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence            86532111  000000    0        0001111   1235778888999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=3.8e-35  Score=307.40  Aligned_cols=253  Identities=26%  Similarity=0.339  Sum_probs=196.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|.. .+++.||+|.+....          ......+.+|+.+++.++||||+++++++...
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~----------~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~   78 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP----------GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRR   78 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCc----------hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeC
Confidence            4667778899999999999965 468999999884332          11234577899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++++|.+++.... .+++.++..++.|++.|++|||+   .+++|+||||+||+++.++.++|+|||++.
T Consensus        79 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~  154 (267)
T cd06645          79 DKLWICMEFCGGGSLQDIYHVTG-PLSESQIAYVSRETLQGLYYLHS---KGKMHRDIKGANILLTDNGHVKLADFGVSA  154 (267)
T ss_pred             CEEEEEEeccCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECcceeee
Confidence            99999999999999999987654 68999999999999999999999   899999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ....   .........|+..|+|||++.   ...++.++|||||||++|||++|+.||........   .+....  .  
T Consensus       155 ~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~---~~~~~~--~--  224 (267)
T cd06645         155 QITA---TIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRA---LFLMTK--S--  224 (267)
T ss_pred             EccC---cccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhh---HHhhhc--c--
Confidence            6532   112233457899999999874   45688999999999999999999999864321110   000000  0  


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         ......... .......+.+++.+|++.+|++||++++++++
T Consensus       225 ---~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~  265 (267)
T cd06645         225 ---NFQPPKLKD-KMKWSNSFHHFVKMALTKNPKKRPTAEKLLQH  265 (267)
T ss_pred             ---CCCCCcccc-cCCCCHHHHHHHHHHccCCchhCcCHHHHhcC
Confidence               000000100 01122346678889999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-35  Score=321.54  Aligned_cols=244  Identities=24%  Similarity=0.291  Sum_probs=185.3

Q ss_pred             eeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc---CCCCcceeeeEEecCccceE
Q 003199          534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI---RHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       534 lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~~~~~l  609 (840)
                      ||+|+||+||+|.. .+|+.||||++......       .......+..|..++...   .||||+++++++.+....++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~-------~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~l   73 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIV-------AKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYL   73 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHh-------hhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEE
Confidence            69999999999965 46899999998432211       112223345566666655   69999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||+++.... 
T Consensus        74 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qil~al~~LH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~-  148 (330)
T cd05586          74 VTDYMSGGELFWHLQKEG-RFSEDRAKFYIAELVLALEHLHK---YDIVYRDLKPENILLDATGHIALCDFGLSKANLT-  148 (330)
T ss_pred             EEcCCCCChHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEecCCcCcCCCC-
Confidence            999999999999987654 68999999999999999999999   9999999999999999999999999999875322 


Q ss_pred             CCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD  768 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  768 (840)
                        .........||+.|+|||++.+. .++.++||||+||++|||++|+.||.....  .  ..+..... .        .
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~--~--~~~~~i~~-~--------~  213 (330)
T cd05586         149 --DNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT--Q--QMYRNIAF-G--------K  213 (330)
T ss_pred             --CCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH--H--HHHHHHHc-C--------C
Confidence              12223346799999999998764 479999999999999999999999965311  0  00000000 0        0


Q ss_pred             cccCCCcHHHHHHHHHHHHHccCCCCCCCC----CHHHHHHH
Q 003199          769 KKLSGSFRDEMIQVLRIAIRCTSKSPATRP----TMNEVVQL  806 (840)
Q Consensus       769 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp----s~~evl~~  806 (840)
                      ..+...  .....+.+++.+|++.||.+||    ++.+++++
T Consensus       214 ~~~~~~--~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h  253 (330)
T cd05586         214 VRFPKN--VLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEH  253 (330)
T ss_pred             CCCCCc--cCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcC
Confidence            011111  1233456778899999999998    57777764

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=4.8e-35  Score=311.20  Aligned_cols=252  Identities=25%  Similarity=0.328  Sum_probs=200.5

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ...+|+..+.||+|+||.||+|.. .+++.||+|.+....          ....+.+.+|+.+++.++|+|++++++++.
T Consensus        17 ~~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~----------~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~   86 (297)
T cd06656          17 PKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQ----------QPKKELIINEILVMRENKNPNIVNYLDSYL   86 (297)
T ss_pred             hhhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCc----------cchHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence            446788899999999999999964 579999999884322          112355788999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      .....++||||+++++|.+++.+.  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        87 ~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~l~~~L~~LH~---~~i~H~dL~p~Nili~~~~~~~l~Dfg~  161 (297)
T cd06656          87 VGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALDFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGF  161 (297)
T ss_pred             cCCEEEEeecccCCCCHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEECcCcc
Confidence            999999999999999999998764  57899999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +......   ........+++.|+|||.+.+..++.++|||||||++|++++|+.||............+    ...   
T Consensus       162 ~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~----~~~---  231 (297)
T cd06656         162 CAQITPE---QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIA----TNG---  231 (297)
T ss_pred             ceEccCC---ccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeec----cCC---
Confidence            8765321   112234568889999999988889999999999999999999999996532111100000    000   


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           .+ ...........+.+++.+|++.+|++||++.+++++
T Consensus       232 -----~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (297)
T cd06656         232 -----TP-ELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQH  269 (297)
T ss_pred             -----CC-CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                 00 000111223446678889999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=7e-35  Score=305.54  Aligned_cols=251  Identities=24%  Similarity=0.343  Sum_probs=193.5

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .+.....||+|+||.||+|.. .++..||+|.+....          ....+.+.+|++++++++|+||+++++++...+
T Consensus         9 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~----------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   78 (268)
T cd06624           9 ENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERD----------SRYVQPLHEEIALHSYLKHRNIVQYLGSDSENG   78 (268)
T ss_pred             cCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCC----------HHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCC
Confidence            334456899999999999964 467899999874322          223467889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCC--ChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-CCCCeeecccc
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHL--DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVADFGI  682 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~--~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~Dfg~  682 (840)
                      ..++|+||+++++|.+++......+  ++..+..++.|++.|++|||+   .+|+||||||+||+++. ++.++|+|||.
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~h~dl~p~nil~~~~~~~~~l~dfg~  155 (268)
T cd06624          79 FFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHD---NQIVHRDIKGDNVLVNTYSGVVKISDFGT  155 (268)
T ss_pred             EEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCeEEEecchh
Confidence            9999999999999999998653344  888899999999999999999   99999999999999986 67899999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccC--CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS--KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +......   ........|++.|+|||++.+.  .++.++||||||+++|||++|+.||.....  .....+... ..  
T Consensus       156 ~~~~~~~---~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~--~~~~~~~~~-~~--  227 (268)
T cd06624         156 SKRLAGI---NPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGE--PQAAMFKVG-MF--  227 (268)
T ss_pred             heecccC---CCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccC--hhhhHhhhh-hh--
Confidence            8765321   1122334578999999988654  378899999999999999999999864211  111111000 00  


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           ...+.+..   ....++.+++.+|++.+|.+|||+.|++++
T Consensus       228 -----~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  265 (268)
T cd06624         228 -----KIHPEIPE---SLSAEAKNFILRCFEPDPDKRASAHDLLQD  265 (268)
T ss_pred             -----ccCCCCCc---ccCHHHHHHHHHHcCCCchhCCCHHHHHhC
Confidence                 00111111   223456678889999999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=9.4e-35  Score=308.58  Aligned_cols=252  Identities=24%  Similarity=0.306  Sum_probs=197.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..+.||.|+||.||+|... +++.||+|++....          ....+.+.+|+++++.++|+|++++++++...
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~----------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   81 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKS----------EEELEDYMVEIEILATCNHPYIVKLLGAFYWD   81 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCC----------HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeC
Confidence            45777889999999999999665 58999999984321          23356788899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|..++......+++..+..++.|++.|++|||+   .+++||||||+||+++.++.++|+|||.+.
T Consensus        82 ~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~  158 (292)
T cd06644          82 GKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVSA  158 (292)
T ss_pred             CeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhc---CCeeecCCCcceEEEcCCCCEEEccCccce
Confidence            99999999999999998887655578999999999999999999999   999999999999999999999999999986


Q ss_pred             hhhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ....   .........+++.|+|||++.     ...++.++|||||||++|||++|+.||.....    . .........
T Consensus       159 ~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~----~-~~~~~~~~~  230 (292)
T cd06644         159 KNVK---TLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP----M-RVLLKIAKS  230 (292)
T ss_pred             eccc---cccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccH----H-HHHHHHhcC
Confidence            5422   112223456888999999884     34568899999999999999999999865311    0 000000000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .       .... ........++.+++.+||+.+|++||++.+++++
T Consensus       231 ~-------~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  269 (292)
T cd06644         231 E-------PPTL-SQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEH  269 (292)
T ss_pred             C-------CccC-CCCcccCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            0       0000 0111233456778889999999999999999875

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=8.2e-35  Score=305.81  Aligned_cols=264  Identities=28%  Similarity=0.409  Sum_probs=200.9

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |...+.||+|+||.||+|.. .+|+.||+|.+..................+.+..|+.+++.++|+|++++++++.....
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            56678899999999999954 46899999988543322111112223345678899999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++||||+++++|.+++.... .+++..+..++.|++.|+.|||+   .+++||||+|+||+++.++.++++|||+++..
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~  158 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTYG-RFEEQLVRFFTEQVLEGLAYLHS---KGILHRDLKADNLLVDADGICKISDFGISKKS  158 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHhh---CCeeecCCChhhEEEcCCCeEEEeeccccccc
Confidence            999999999999999998764 68999999999999999999999   89999999999999999999999999998765


Q ss_pred             hccCCCCcceecccccccccCccccccCC--CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSK--ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .... .........|+..|+|||.+....  ++.++||||||+++||+++|..||....    ..........  .. ..
T Consensus       159 ~~~~-~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~--~~-~~  230 (272)
T cd06629         159 DDIY-DNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEE----AIAAMFKLGN--KR-SA  230 (272)
T ss_pred             cccc-cccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcc----hHHHHHHhhc--cc-cC
Confidence            3211 111223456889999999887654  7899999999999999999999986421    1111111000  00 00


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .......   .......+.+++.+|+..+|++||++.+++++
T Consensus       231 ~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         231 PPIPPDV---SMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             CcCCccc---cccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            0011111   12234567778889999999999999999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.7e-35  Score=301.36  Aligned_cols=249  Identities=26%  Similarity=0.358  Sum_probs=196.7

Q ss_pred             CeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEE
Q 003199          532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVY  611 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~  611 (840)
                      ++||+|+||.||+|...+++.||+|.+.....         ....+.+.+|+++++++.|+||+++++++.+....++||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~---------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   71 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLP---------PDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVM   71 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCC---------HHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEE
Confidence            36999999999999777699999998743321         133567889999999999999999999999999999999


Q ss_pred             eecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCC
Q 003199          612 EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG  691 (840)
Q Consensus       612 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~  691 (840)
                      ||+++++|.+++......+++..+..++.+++.|++|||+   .+++||||||+||+++.++.++|+|||.+...... .
T Consensus        72 e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~-~  147 (251)
T cd05041          72 ELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGG-I  147 (251)
T ss_pred             EcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCEehhhcCcceEEEcCCCcEEEeeccccccccCC-c
Confidence            9999999999997755568899999999999999999999   89999999999999999999999999998765321 1


Q ss_pred             CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       692 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                      .........++..|+|||.+.+..++.++||||||+++|||++ |..||.....  ......    .....      .. 
T Consensus       148 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~--~~~~~~----~~~~~------~~-  214 (251)
T cd05041         148 YTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSN--QQTRER----IESGY------RM-  214 (251)
T ss_pred             ceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCH--HHHHHH----HhcCC------CC-
Confidence            1111112234567999999988889999999999999999999 8888865321  000000    00000      00 


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                        .........+.+++.+|+..+|.+||++.|+++.|.
T Consensus       215 --~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         215 --PAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             --CCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence              011123456788899999999999999999999885

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=6.2e-35  Score=317.28  Aligned_cols=263  Identities=22%  Similarity=0.300  Sum_probs=195.0

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++.++|+..+.||+|+||.||+|.. .+++.||||++....        ......+.+.+|+.++++++|+||+++++++
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   83 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPF--------QSLIHARRTYRELRLLKHMKHENVIGLLDVF   83 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchh--------hhhHHHHHHHHHHHHHHhcCCCchhhhhhhh
Confidence            4567899999999999999999954 578999999884322        1122345677899999999999999999887


Q ss_pred             ecC------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          602 SSL------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       602 ~~~------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      ...      ...++++|++ +++|.+++...  .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrdikp~Nil~~~~~~~  157 (343)
T cd07878          84 TPATSIENFNEVYLVTNLM-GADLNNIVKCQ--KLSDEHVQFLIYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCEL  157 (343)
T ss_pred             cccccccccCcEEEEeecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecccCChhhEEECCCCCE
Confidence            532      3458999988 78998887653  58999999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      ||+|||+++....      ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.... .....+..
T Consensus       158 kl~Dfg~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~~~~  230 (343)
T cd07878         158 RILDFGLARQADD------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYI-DQLKRIME  230 (343)
T ss_pred             EEcCCccceecCC------CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHH
Confidence            9999999976432      1234568999999999876 56889999999999999999999999753210 00000000


Q ss_pred             hhhccc-cc--------hhhhcc--cccCC-C----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          755 IKVDTK-EG--------IMEVLD--KKLSG-S----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       755 ~~~~~~-~~--------~~~~~~--~~~~~-~----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...... +.        ......  +.... .    +......+.+++.+|++.||.+|||+.|++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         231 VVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000000 00        000000  00000 0    00112346788999999999999999999987

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=6.7e-35  Score=315.67  Aligned_cols=258  Identities=27%  Similarity=0.326  Sum_probs=199.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC--------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN--------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~  596 (840)
                      .+|+..+.||+|+||.||+|...        .+..||+|.+....         .....+.+.+|+++++++ +|+||++
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~~h~~iv~   82 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA---------TDKDLSDLVSEMEMMKMIGKHKNIIN   82 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc---------CHHHHHHHHHHHHHHHhhcCCCCeee
Confidence            35788899999999999998542        12368999874321         123356788999999999 7999999


Q ss_pred             eeeEEecCccceEEEeecCCCChHHHhhcC---------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          597 LYCYFSSLYCNLLVYEYMPNGNLWDALHKG---------------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      +++++......++|+||+++|+|.+++...               ...++|.++..++.|++.||+|||+   ++++|||
T Consensus        83 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~givH~d  159 (334)
T cd05100          83 LLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLAS---QKCIHRD  159 (334)
T ss_pred             eeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCeeccc
Confidence            999999999999999999999999998753               1357889999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+||++++++.+||+|||+++....... ........++..|+|||++.+..++.++||||||+++|||++ |..||.
T Consensus       160 lkp~Nill~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  238 (334)
T cd05100         160 LAARNVLVTEDNVMKIADFGLARDVHNIDY-YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYP  238 (334)
T ss_pred             cccceEEEcCCCcEEECCcccceecccccc-cccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999976532111 111122334567999999998899999999999999999998 888886


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ...     ...+.....          ..............+.+++.+|++.+|++||++.|+++.|+++.
T Consensus       239 ~~~-----~~~~~~~~~----------~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~  294 (334)
T cd05100         239 GIP-----VEELFKLLK----------EGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVL  294 (334)
T ss_pred             CCC-----HHHHHHHHH----------cCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHh
Confidence            421     111111100          00001111123346778889999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=8.3e-35  Score=303.03  Aligned_cols=251  Identities=25%  Similarity=0.336  Sum_probs=197.6

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec-C
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS-L  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~  604 (840)
                      .|+..+.||+|++|.||++.. .+++.||+|++.....        .....+.+.+|++++++++|+|++++++.+.. .
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--------~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNA--------SRRERKAAEQEAQLLSQLKHPNIVAYRESWEGED   72 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhc--------CHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCC
Confidence            367788999999999999854 4678999999843221        12234568889999999999999999988764 4


Q ss_pred             ccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+++++|.+++... ...+++.++..++.+++.|+++||+   .+++||||||+||+++.++.++|+|||++
T Consensus        73 ~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~---~~i~H~di~p~nil~~~~~~~~l~df~~~  149 (257)
T cd08223          73 GLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHE---KHILHRDLKTQNVFLTRTNIIKVGDLGIA  149 (257)
T ss_pred             CEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCchhEEEecCCcEEEecccce
Confidence            4578999999999999999764 3358999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ......   ........+++.|+|||++.+..++.++||||+|+++|||++|+.||....     ...+...        
T Consensus       150 ~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~-----~~~~~~~--------  213 (257)
T cd08223         150 RVLENQ---CDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD-----MNSLVYR--------  213 (257)
T ss_pred             EEeccc---CCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC-----HHHHHHH--------
Confidence            765331   122334568899999999999889999999999999999999999986421     1111100        


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        ................+.+++.+|++.+|++||++.+++++
T Consensus       214 --~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         214 --IIEGKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             --HHhcCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence              00111111112234567788889999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=2.9e-35  Score=315.19  Aligned_cols=196  Identities=30%  Similarity=0.409  Sum_probs=171.5

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-C-----CCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-H-----KNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h-----~niv~l~  598 (840)
                      .+|.+.+.||+|+||.|-+| +..+++.||||+++...           ....+-..|+.+|..++ |     -|+|+++
T Consensus       186 ~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k-----------~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~  254 (586)
T KOG0667|consen  186 YRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK-----------RFLRQAQIEIRILELLNKHDPDDKYNIVRML  254 (586)
T ss_pred             EEEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh-----------HHHHHHHHHHHHHHHHhccCCCCCeeEEEee
Confidence            38899999999999999999 67789999999996543           33556677999999997 4     5899999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC--CCC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN--YQP  675 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~--~~~  675 (840)
                      +||.-..+.|||+|.+ .-+|++++..+. ..++...++.|+.||+.||.+||+   .+|||+||||+|||+.+.  ..+
T Consensus       255 d~F~fr~HlciVfELL-~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~---l~IIHcDLKPENILL~~~~r~~v  330 (586)
T KOG0667|consen  255 DYFYFRNHLCIVFELL-STNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHE---LGIIHCDLKPENILLKDPKRSRI  330 (586)
T ss_pred             eccccccceeeeehhh-hhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCChhheeeccCCcCce
Confidence            9999999999999999 569999998763 578999999999999999999999   999999999999999753  479


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCC
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD  742 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  742 (840)
                      ||+|||.|.....     ... ..+-++.|.|||++.+.+|+.+.||||||||++||++|.+-|.++
T Consensus       331 KVIDFGSSc~~~q-----~vy-tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  331 KVIDFGSSCFESQ-----RVY-TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             eEEecccccccCC-----cce-eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence            9999999987532     222 567788999999999999999999999999999999998888764

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-36  Score=282.62  Aligned_cols=247  Identities=26%  Similarity=0.390  Sum_probs=195.3

Q ss_pred             CccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecCcc
Q 003199          529 TEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYC  606 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~  606 (840)
                      .....||.|..|.||++..+ +|..+|||.+.....         .+..+.+...+.++..-. +|.||+-+|||..+..
T Consensus        95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~N---------kee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~d  165 (391)
T KOG0983|consen   95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGN---------KEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTD  165 (391)
T ss_pred             hhHHhhcCCCccceEEEEEcccceEEEEEeecccCC---------HHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCch
Confidence            34557999999999999665 689999999855432         344567778888877664 8999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++.||.| .......+..-...+++.-+-++...+++||.||.+.  ++|+|||+||+|||+|+.|.+|+||||.+.++
T Consensus       166 V~IcMelM-s~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeK--H~viHRDvKPSNILlDe~GniKlCDFGIsGrl  242 (391)
T KOG0983|consen  166 VFICMELM-STCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGNIKLCDFGISGRL  242 (391)
T ss_pred             HHHHHHHH-HHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHh--cceeecccCccceEEccCCCEEeeccccccee
Confidence            99999999 4456666666656789999999999999999999985  78999999999999999999999999999887


Q ss_pred             hccCCCCcceecccccccccCcccccc---CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .+    +...+...|-+.|||||.+.-   ..|+.++||||||+.++|+.||+.||..-..+...              .
T Consensus       243 vd----SkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~--------------l  304 (391)
T KOG0983|consen  243 VD----SKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEV--------------L  304 (391)
T ss_pred             ec----ccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHH--------------H
Confidence            54    334455678899999999853   47899999999999999999999999863211111              1


Q ss_pred             hhhcc---cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLD---KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~---~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..+++   +.+++. ......+.+++..|+++|+.+||...+++++
T Consensus       305 tkvln~ePP~L~~~-~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  305 TKVLNEEPPLLPGH-MGFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             HHHHhcCCCCCCcc-cCcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence            11222   222221 1144566777789999999999999999876

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=3.2e-35  Score=306.07  Aligned_cols=240  Identities=20%  Similarity=0.297  Sum_probs=186.6

Q ss_pred             CeeeccCCcEEEEEEeC-CC-------cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          532 NKVGQGGSGTVYKIDLN-SG-------EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      +.||+|+||.||+|... .+       ..||+|.+...          .....+.+.+|+.+++.+.|||++++++++..
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~----------~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~   70 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS----------HRNYSESFFEAASMMSQLSHKHLVLNYGVCVC   70 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcch----------hHHHHHHHHHHHHHHHhCCCCChhheeeEEEe
Confidence            36999999999999653 22       34777776221          12335678889999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC--------C
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ--------P  675 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~--------~  675 (840)
                      ....++||||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.        +
T Consensus        71 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~~~~~~~~~  147 (258)
T cd05078          71 GDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLED---KGLTHGNVCAKNVLLIREEDRKTGNPPFI  147 (258)
T ss_pred             CCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEEEecccccccCCCceE
Confidence            899999999999999999998766578999999999999999999999   99999999999999988765        5


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCC-CCCCCCCCCCcchhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGR-KPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~-~p~~~~~~~~~~~~~~~  753 (840)
                      +++|||.+.....       .....+++.|+|||++.+. .++.++||||||+++|||++|. .|+.....     ....
T Consensus       148 ~l~d~g~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~-----~~~~  215 (258)
T cd05078         148 KLSDPGISITVLP-------KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDS-----QKKL  215 (258)
T ss_pred             EecccccccccCC-------chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccH-----HHHH
Confidence            8999998865422       2234678899999998764 5799999999999999999985 55543210     0000


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .. ...        ...++.   ....++.+++.+||+.||++|||++++++.|.
T Consensus       216 ~~-~~~--------~~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         216 QF-YED--------RHQLPA---PKWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             HH-HHc--------cccCCC---CCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            00 000        011111   12245778888999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=1e-34  Score=304.54  Aligned_cols=261  Identities=22%  Similarity=0.344  Sum_probs=201.4

Q ss_pred             cCccCeeeccCCcEEEEEEeCC--CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhc-cCCCCcceeeeEEecC
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNS--GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN-IRHKNIVKLYCYFSSL  604 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~~  604 (840)
                      |+..+.||+|+||.||+|....  ++.+|+|.+....................+..|+.++.+ ++||||+++++++.+.
T Consensus         2 y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   81 (269)
T cd08528           2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEN   81 (269)
T ss_pred             chhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccC
Confidence            5667889999999999997654  688999988654433222112223345667788888875 7999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          605 YCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ...++||||+++++|.+++..   ....+++..++.++.|++.|+.|||+.  .+++|+||+|+||++++++.++|+|||
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~--~~i~H~dl~~~nil~~~~~~~~l~dfg  159 (269)
T cd08528          82 DRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGEDDKVTITDFG  159 (269)
T ss_pred             CeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC--CceeecCCCHHHEEECCCCcEEEeccc
Confidence            999999999999999988743   334689999999999999999999952  679999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      .+......    .......|+..|+|||.+.+..++.++||||||+++|||++|+.||....     .......      
T Consensus       160 ~~~~~~~~----~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~-----~~~~~~~------  224 (269)
T cd08528         160 LAKQKQPE----SKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN-----MLSLATK------  224 (269)
T ss_pred             ceeecccc----cccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccC-----HHHHHHH------
Confidence            99765331    13345568899999999998889999999999999999999999986421     1111100      


Q ss_pred             chhhhcccccCCC-cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          762 GIMEVLDKKLSGS-FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       762 ~~~~~~~~~~~~~-~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                          .......+. .......+.+++.+||+.||++||++.|+..++++
T Consensus       225 ----~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~~  269 (269)
T cd08528         225 ----IVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMISD  269 (269)
T ss_pred             ----HhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhcC
Confidence                000111100 01123457778889999999999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.2e-34  Score=303.25  Aligned_cols=256  Identities=25%  Similarity=0.302  Sum_probs=196.0

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC-
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-  604 (840)
                      +|+..+.||+|+||.||+|.. .+|..||||.+......     .......+.+.+|+.++++++||||+++++++.+. 
T Consensus         3 ~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~-----~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   77 (265)
T cd06652           3 NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPES-----PETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPM   77 (265)
T ss_pred             cceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCC-----cccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCC
Confidence            577788999999999999965 46899999987432211     11123356788999999999999999999988663 


Q ss_pred             -ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 -YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 -~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                       ...++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+++|+||||+||+++.++.++|+|||++
T Consensus        78 ~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~Dfg~~  153 (265)
T cd06652          78 ERTLSIFMEHMPGGSIKDQLKSYG-ALTENVTRKYTRQILEGVSYLHS---NMIVHRDIKGANILRDSVGNVKLGDFGAS  153 (265)
T ss_pred             CceEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEecCCCCEEECcCccc
Confidence             45679999999999999987653 57889999999999999999999   89999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +................|+..|+|||.+.+..++.++||||||+++|||++|+.||....    .........       
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~----~~~~~~~~~-------  222 (265)
T cd06652         154 KRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFE----AMAAIFKIA-------  222 (265)
T ss_pred             cccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccc----hHHHHHHHh-------
Confidence            765321111112234568899999999988889999999999999999999999996421    110000000       


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         ...............+.+++.+|+. +|++||+++|++++
T Consensus       223 ---~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         223 ---TQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             ---cCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence               0000111122334456677778884 99999999999865

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.2e-35  Score=307.60  Aligned_cols=252  Identities=24%  Similarity=0.332  Sum_probs=198.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||.|++|.||+|... ++..||+|++....          ....+.+..|++++++++|+|++++++++...
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~----------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   74 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIES----------EEELEDFMVEIDILSECKHPNIVGLYEAYFYE   74 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCC----------HHHHHHHHHHHHHHHhCCCCceeEEEEEEecC
Confidence            45777888999999999999664 68999999984321          23346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|.+++......+++..+..++.|++.|+.|||+   .+|+|+||||+||+++.++.++|+|||.+.
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~nili~~~~~~~l~d~g~~~  151 (280)
T cd06611          75 NKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHS---HKVIHRDLKAGNILLTLDGDVKLADFGVSA  151 (280)
T ss_pred             CeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEECCCCCEEEccCccch
Confidence            99999999999999999998765579999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      .....   ........+++.|+|||.+.     ...++.++||||||+++|||++|+.||...... ...   ... ...
T Consensus       152 ~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~-~~~---~~~-~~~  223 (280)
T cd06611         152 KNKST---LQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPM-RVL---LKI-LKS  223 (280)
T ss_pred             hhccc---ccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHH-HHH---HHH-hcC
Confidence            65321   12223456899999999874     345678999999999999999999999753110 000   000 000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                             ..+.+. ........+.+++.+||+.+|++||++.+++++
T Consensus       224 -------~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         224 -------EPPTLD-QPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             -------CCCCcC-CcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence                   000000 011123456678889999999999999999886

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.7e-35  Score=305.48  Aligned_cols=252  Identities=24%  Similarity=0.326  Sum_probs=200.3

Q ss_pred             hcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~  605 (840)
                      .|+..++||+|+.++||++...+.+.+|+|++....        .+.+....|..|+..|.+++ |.+||++++|-..++
T Consensus       362 ~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~--------~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~  433 (677)
T KOG0596|consen  362 EYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLE--------ADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDG  433 (677)
T ss_pred             hhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhh--------cCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCc
Confidence            467788999999999999998888999999774322        23566789999999999995 999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..||||||= ..+|..+|.+.....+...+..+..|++.|+.+.|+   +||||.||||.|+|+-. |.+||+|||.|..
T Consensus       434 ~lYmvmE~G-d~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~---~gIVHSDLKPANFLlVk-G~LKLIDFGIA~a  508 (677)
T KOG0596|consen  434 YLYMVMECG-DIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQ---HGIVHSDLKPANFLLVK-GRLKLIDFGIANA  508 (677)
T ss_pred             eEEEEeecc-cccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH---hceeecCCCcccEEEEe-eeEEeeeechhcc
Confidence            999999976 679999999876444423788899999999999999   99999999999999965 5899999999988


Q ss_pred             hhccCCCCcceecccccccccCccccccC-----------CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSS-----------KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +..+ .........+||+.|||||.+...           ..+.++||||+|||+|+|+.|+.||..-.      -.|.+
T Consensus       509 I~~D-TTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~------n~~aK  581 (677)
T KOG0596|consen  509 IQPD-TTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQII------NQIAK  581 (677)
T ss_pred             cCcc-ccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHH------HHHHH
Confidence            7653 445566778999999999988432           25689999999999999999999997421      01221


Q ss_pred             hhhccccchhhhcccccCCCcHH--HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRD--EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .        ..+.++.-.-.|++  ...+++++++.|+..||.+||++.|++++
T Consensus       582 l--------~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  582 L--------HAITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             H--------HhhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence            1        11222211111111  11228899999999999999999999986

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=7.8e-35  Score=305.44  Aligned_cols=250  Identities=27%  Similarity=0.363  Sum_probs=193.6

Q ss_pred             CeeeccCCcEEEEEEeCC-------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          532 NKVGQGGSGTVYKIDLNS-------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~-------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.||+|+||.||+|...+       ++.||||.+.....         ......+.+|+.+++.++||||+++++++...
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   71 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT---------DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLN   71 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccc---------hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCC
Confidence            369999999999996542       25799998743211         12245688899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-----
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-----  673 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-----  673 (840)
                      ...++||||+++++|.+++...      ...+++.++..++.|++.|++|||+   .+++|+||||+||+++.++     
T Consensus        72 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~~  148 (269)
T cd05044          72 EPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQ---MHFIHRDLAARNCLVSEKGYDADR  148 (269)
T ss_pred             CCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHh---CCcccCCCChheEEEecCCCCCCc
Confidence            9999999999999999998753      2347899999999999999999999   8999999999999999877     


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhh
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYW  752 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~  752 (840)
                      .++++|||+++...... .........++..|+|||++.+..++.++||||||+++|||++ |+.||.....  ......
T Consensus       149 ~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~--~~~~~~  225 (269)
T cd05044         149 VVKIGDFGLARDIYKSD-YYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN--QEVLQH  225 (269)
T ss_pred             ceEECCccccccccccc-ccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH--HHHHHH
Confidence            89999999997653311 1111223345678999999998899999999999999999998 9999864311  111110


Q ss_pred             hhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      .    .         ..............+.+++.+||..+|.+||++.++++.|.+
T Consensus       226 ~----~---------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         226 V----T---------AGGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             H----h---------cCCccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            0    0         000001112234567788889999999999999999998863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.7e-35  Score=321.89  Aligned_cols=260  Identities=21%  Similarity=0.256  Sum_probs=195.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      .+|...+.||+|+||.||++...   .+..||||.+...               +...+|+++++.++||||+++++++.
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~---------------~~~~~E~~il~~l~h~~iv~~~~~~~  156 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG---------------KTPGREIDILKTISHRAIINLIHAYR  156 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc---------------ccHHHHHHHHHhcCCCCccceeeeEe
Confidence            46888999999999999998543   4578999987322               12457999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      .....++|||++. ++|.+++... ..+++..+..++.|++.||+|||+   ++||||||||+|||++.++.++|+|||+
T Consensus       157 ~~~~~~lv~e~~~-~~l~~~l~~~-~~l~~~~~~~i~~ql~~aL~~LH~---~givHrDlkp~Nill~~~~~~~l~DfG~  231 (392)
T PHA03207        157 WKSTVCMVMPKYK-CDLFTYVDRS-GPLPLEQAITIQRRLLEALAYLHG---RGIIHRDVKTENIFLDEPENAVLGDFGA  231 (392)
T ss_pred             eCCEEEEEehhcC-CCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEccCcc
Confidence            9999999999995 7888888544 478999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc--hhhhhhhhh-cc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN--IIYWVSIKV-DT  759 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~--~~~~~~~~~-~~  759 (840)
                      ++..... ..........||+.|+|||++.+..++.++|||||||++|||++|+.||.+.......  +....+... ..
T Consensus       232 a~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~  310 (392)
T PHA03207        232 ACKLDAH-PDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHP  310 (392)
T ss_pred             ccccCcc-cccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCc
Confidence            9765432 1112233567999999999999889999999999999999999999999764322110  000000000 00


Q ss_pred             cc-------chhh---hcccccCCCc--H------HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KE-------GIME---VLDKKLSGSF--R------DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~-------~~~~---~~~~~~~~~~--~------~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+       ....   ......++.+  .      ....++.+++.+|+..||++||++.|++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        311 LEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             cccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence            00       0000   0000000000  0      112456778889999999999999999987

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.8e-35  Score=306.70  Aligned_cols=249  Identities=29%  Similarity=0.381  Sum_probs=199.7

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||.|++|.||+|... +++.||+|++.....         ......+.+|+++++.++|+|++++++++.+..
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   72 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA---------EDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGS   72 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeecccc---------chHHHHHHHHHHHHHHcCCCCeeeeeEEEEECC
Confidence            4667788999999999999654 689999998843221         122456789999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|+||+++++|.+++...  .+++..+..++.|++.|+.|||+   ++++||||+|+||++++++.++++|||+++.
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  147 (274)
T cd06609          73 KLWIIMEYCGGGSCLDLLKPG--KLDETYIAFILREVLLGLEYLHE---EGKIHRDIKAANILLSEEGDVKLADFGVSGQ  147 (274)
T ss_pred             eEEEEEEeeCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEccccccee
Confidence            999999999999999999875  68999999999999999999999   9999999999999999999999999999977


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ....   ........+++.|+|||++.+..++.++||||||+++|||++|+.||.......     .... .      ..
T Consensus       148 ~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~-----~~~~-~------~~  212 (274)
T cd06609         148 LTST---MSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMR-----VLFL-I------PK  212 (274)
T ss_pred             eccc---ccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHH-----HHHH-h------hh
Confidence            6432   122334568889999999998889999999999999999999999996532110     0000 0      00


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .........  .....+.+++.+|+..+|++||++++++++
T Consensus       213 ~~~~~~~~~--~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         213 NNPPSLEGN--KFSKPFKDFVSLCLNKDPKERPSAKELLKH  251 (274)
T ss_pred             cCCCCCccc--ccCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            001111111  023456778889999999999999999886

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=5.4e-35  Score=330.15  Aligned_cols=260  Identities=18%  Similarity=0.199  Sum_probs=186.5

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC------CCCccee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR------HKNIVKL  597 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~l  597 (840)
                      ..+|...+.||+|+||+||+|.. .+++.||||++....           .....+..|+++++.++      |.+++++
T Consensus       128 ~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-----------~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i  196 (467)
T PTZ00284        128 TQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-----------KYTRDAKIEIQFMEKVRQADPADRFPLMKI  196 (467)
T ss_pred             CCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-----------hhHHHHHHHHHHHHHHhhcCcccCcceeee
Confidence            45788899999999999999955 468899999984321           11223444555555554      4568889


Q ss_pred             eeEEecC-ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC---
Q 003199          598 YCYFSSL-YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY---  673 (840)
Q Consensus       598 ~~~~~~~-~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~---  673 (840)
                      ++++... ...++|||++ +++|.+++.+.. .+++..+..|+.||+.||+|||+.  .+||||||||+|||++.++   
T Consensus       197 ~~~~~~~~~~~~iv~~~~-g~~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~  272 (467)
T PTZ00284        197 QRYFQNETGHMCIVMPKY-GPCLLDWIMKHG-PFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVV  272 (467)
T ss_pred             EEEEEcCCceEEEEEecc-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCccc
Confidence            9888764 4678999988 788999887654 689999999999999999999972  4999999999999998765   


Q ss_pred             -------------CCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCC
Q 003199          674 -------------QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVE  740 (840)
Q Consensus       674 -------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~  740 (840)
                                   .+||+|||.+...      ........||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus       273 ~~~~~~~~~~~~~~vkl~DfG~~~~~------~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~  346 (467)
T PTZ00284        273 DPVTNRALPPDPCRVRICDLGGCCDE------RHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYD  346 (467)
T ss_pred             ccccccccCCCCceEEECCCCccccC------ccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                         4899999987532      122345679999999999999999999999999999999999999997


Q ss_pred             CCCCCCcchhhhhhhhhccc---------cchhhhccc--ccCC--------------CcH--HHHHHHHHHHHHccCCC
Q 003199          741 DDFGDNKNIIYWVSIKVDTK---------EGIMEVLDK--KLSG--------------SFR--DEMIQVLRIAIRCTSKS  793 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~--------------~~~--~~~~~l~~l~~~cl~~d  793 (840)
                      ..... ..............         ....++.+.  .+.+              ...  -....+.+++.+|++.|
T Consensus       347 ~~~~~-~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~d  425 (467)
T PTZ00284        347 THDNL-EHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYD  425 (467)
T ss_pred             CCChH-HHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcC
Confidence            53211 00000000000000         000000000  0000              000  01245678999999999


Q ss_pred             CCCCCCHHHHHHH
Q 003199          794 PATRPTMNEVVQL  806 (840)
Q Consensus       794 P~~Rps~~evl~~  806 (840)
                      |++|||++|+++|
T Consensus       426 P~~R~ta~e~L~H  438 (467)
T PTZ00284        426 RQKRLNARQMTTH  438 (467)
T ss_pred             hhhCCCHHHHhcC
Confidence            9999999999986

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=8.1e-35  Score=308.35  Aligned_cols=264  Identities=25%  Similarity=0.328  Sum_probs=198.3

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|++|.||+|..+ +|+.||+|++......        ....+.+.+|+.++++++|+|++++++++....
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--------~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   73 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDD--------PVIKKIALREIRMLKQLKHPNLVNLIEVFRRKR   73 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccC--------ccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCC
Confidence            5777889999999999999665 6899999988533211        112345788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||++++.+..+..... .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.++|+|||++..
T Consensus        74 ~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~ql~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (286)
T cd07847          74 KLHLVFEYCDHTVLNELEKNPR-GVPEHLIKKIIWQTLQAVNFCHK---HNCIHRDVKPENILITKQGQIKLCDFGFARI  149 (286)
T ss_pred             EEEEEEeccCccHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCChhhEEEcCCCcEEECcccccee
Confidence            9999999999988887776543 68999999999999999999999   9999999999999999999999999999977


Q ss_pred             hhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   .......++..|+|||++.+ ..++.++||||||+++|||++|+.||.+....+. ................
T Consensus       150 ~~~~~---~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~  225 (286)
T cd07847         150 LTGPG---DDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQ-LYLIRKTLGDLIPRHQ  225 (286)
T ss_pred             cCCCc---ccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhCCCChHHh
Confidence            64321   12233457889999998866 4578999999999999999999999975422111 1110000000000000


Q ss_pred             hh----------ccccc--C----CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EV----------LDKKL--S----GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~----------~~~~~--~----~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..          ..+..  .    .........+.+++.+|++.+|++||++.|++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~  283 (286)
T cd07847         226 QIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEH  283 (286)
T ss_pred             hhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcC
Confidence            00          00000  0    0011224567889999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=5.5e-35  Score=309.24  Aligned_cols=265  Identities=24%  Similarity=0.322  Sum_probs=194.8

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||+|... +|+.||+|++......        ......+.+|++++++++|+|++++++++.+..
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~--------~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~   72 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD--------EGVPSSALREICLLKELKHKNIVRLYDVLHSDK   72 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeeccccc--------ccCccchhHHHHHHHhcCCCCeeeHHHHhccCC
Confidence            3667789999999999999654 7899999998543211        112345678999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|+||++ ++|.+++......+++..+..++.||++||+|||+   ++++||||||+||+++.++.+||+|||+++.
T Consensus        73 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~  148 (284)
T cd07839          73 KLTLVFEYCD-QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHS---HNVLHRDLKPQNLLINKNGELKLADFGLARA  148 (284)
T ss_pred             ceEEEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEcCCCcEEECccchhhc
Confidence            9999999996 58888887654568999999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc-ccc--
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD-TKE--  761 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~--  761 (840)
                      ....   ........+++.|+|||++.+. .++.++|||||||++|||++|+.|+................... ...  
T Consensus       149 ~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (284)
T cd07839         149 FGIP---VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESW  225 (284)
T ss_pred             cCCC---CCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHh
Confidence            5321   1222344678899999988764 46899999999999999999998864322111100000000000 000  


Q ss_pred             -chhhhccc----ccCC------CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 -GIMEVLDK----KLSG------SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 -~~~~~~~~----~~~~------~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       ......+.    ....      .......++.+++.+|++.||.+|||+++++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h  281 (284)
T cd07839         226 PGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQH  281 (284)
T ss_pred             HHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcC
Confidence             00000000    0000      001123466788889999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=1.4e-34  Score=301.22  Aligned_cols=250  Identities=24%  Similarity=0.360  Sum_probs=197.6

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|++|.||+|.. .+++.+|||++......        ....+.+.+|++++++++|||++++++.+....
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   72 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMT--------KDERLAAQNECQVLKLLSHPNIIEYYENFLEDK   72 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccc--------cHHHHHHHHHHHHHhhCCCCchhheeeeEecCC
Confidence            367788999999999999855 47899999998533211        123467889999999999999999999999889


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-CCeeecccch
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIA  683 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~Dfg~a  683 (840)
                      ..++||||+++++|.+++.... ..+++..+..++.+++.|++|||+   ++++|+||+|+||++++++ .+|++|||.+
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~~l~d~~~~  149 (256)
T cd08220          73 ALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHT---KLILHRDLKTQNILLDKHKMVVKIGDFGIS  149 (256)
T ss_pred             EEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccCCCc
Confidence            9999999999999999997643 358999999999999999999999   9999999999999998654 5799999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ......    .......++..|+|||.+.+..++.++||||||+++|+|++|+.||.....  ......   .       
T Consensus       150 ~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~--~~~~~~---~-------  213 (256)
T cd08220         150 KILSSK----SKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL--PALVLK---I-------  213 (256)
T ss_pred             eecCCC----ccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch--HHHHHH---H-------
Confidence            765331    222335688899999999888889999999999999999999999865311  111110   0       


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         ...............+.+++.+||+.+|++|||+.|++++
T Consensus       214 ---~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~  253 (256)
T cd08220         214 ---MSGTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQ  253 (256)
T ss_pred             ---HhcCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence               0000111111133456778889999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.3e-34  Score=306.66  Aligned_cols=253  Identities=27%  Similarity=0.388  Sum_probs=197.8

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||+|... +|..||+|.+....         .......+.+|+.++++++|+||+++++++....
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~---------~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   72 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL---------DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEG   72 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc---------CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCC
Confidence            5677889999999999999665 78999999884321         1222467889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcC--CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          606 CNLLVYEYMPNGNLWDALHKG--LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ..++||||+++++|..++...  ...+++..+..++.+++.|+.|||+.  .+++||||||+||+++.++.++|+|||.+
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~  150 (286)
T cd06622          73 AVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVS  150 (286)
T ss_pred             eEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhc--CCEeeCCCCHHHEEECCCCCEEEeecCCc
Confidence            999999999999999988764  23689999999999999999999962  58999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccC------CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSS------KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      ..+..     .......+++.|+|||.+.+.      .++.++|||||||++|||++|+.||.....  ......     
T Consensus       151 ~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--~~~~~~-----  218 (286)
T cd06622         151 GNLVA-----SLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETY--ANIFAQ-----  218 (286)
T ss_pred             ccccC-----CccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcch--hhHHHH-----
Confidence            76532     122234578899999988554      348899999999999999999999964211  111000     


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                           ..............+...++.+++.+|++.+|++||++.+++++-
T Consensus       219 -----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~  263 (286)
T cd06622         219 -----LSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHP  263 (286)
T ss_pred             -----HHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcCh
Confidence                 011111111111223445667788899999999999999999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=1.7e-34  Score=302.17  Aligned_cols=253  Identities=25%  Similarity=0.334  Sum_probs=198.0

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec--C
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS--L  604 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~  604 (840)
                      |+..+.||.|+||.||+|.. .+|+.||+|++......        ....+.+..|+++++.++|+|++++++++..  .
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~--------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   73 (265)
T cd08217           2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMT--------EKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSN   73 (265)
T ss_pred             ceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCC--------HHHHHHHHHHHHHHHhcCCCccceeeeeeecCCC
Confidence            66778999999999999954 57899999988533211        2334678899999999999999999998754  4


Q ss_pred             ccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcC--CCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGL--LSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~--~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      ...+++|||+++++|.+++...   ...+++..++.++.+++.||+|||..+  ..+++|+||+|+||++++++.+|++|
T Consensus        74 ~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d  153 (265)
T cd08217          74 QTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGD  153 (265)
T ss_pred             CEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEec
Confidence            4568999999999999998653   346899999999999999999999211  28999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ||++......   ........+++.|+|||++.+..++.++||||||+++|+|++|+.||....  ...   ..+.    
T Consensus       154 ~g~~~~~~~~---~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~---~~~~----  221 (265)
T cd08217         154 FGLAKILGHD---SSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN--QLQ---LASK----  221 (265)
T ss_pred             ccccccccCC---cccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC--HHH---HHHH----
Confidence            9999876432   111234568999999999988889999999999999999999999997531  111   1110    


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            ......+.........+.+++.+|++.+|++||++.+|+++
T Consensus       222 ------~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         222 ------IKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             ------HhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                  00111111112334567788889999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=1e-34  Score=307.61  Aligned_cols=264  Identities=25%  Similarity=0.345  Sum_probs=200.4

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|++|.||+|.. .+|+.||||++......        ....+.+.+|+.++++++|+|++++++++....
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~--------~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   72 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLE--------GGIPNQALREIKALQACQHPYVVKLLDVFPHGS   72 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEccccc--------chhhHHHHHHHHHHHhCCCCCCcceeeEEecCC
Confidence            367788999999999999965 47899999998543311        122457889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+ +++|.+++......+++.++..++.|+++||+|||+   .+++|+||||+||++++++.++++|||.+..
T Consensus        73 ~~~~v~e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~  148 (286)
T cd07832          73 GFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHA---NGIMHRDLKPANLLISADGVLKIADFGLARL  148 (286)
T ss_pred             eeEEEeccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCHHHEEEcCCCcEEEeeeeeccc
Confidence            999999999 999999997665678999999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc--c--
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT--K--  760 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~--~--  760 (840)
                      .....  ........|+..|+|||++.+. .++.++||||+|+++|||++|++||.....  .....+.......  .  
T Consensus       149 ~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~--~~~~~~~~~~~~~~~~~~  224 (286)
T cd07832         149 FSEEE--PRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEND--IEQLAIVFRTLGTPNEET  224 (286)
T ss_pred             ccCCC--CCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCH--HHHHHHHHHHcCCCChHH
Confidence            64321  1223345688999999988654 468999999999999999999888764321  1110000000000  0  


Q ss_pred             -------cchhhhc-ccc----cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 -------EGIMEVL-DKK----LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 -------~~~~~~~-~~~----~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                             ....... ...    +.....+....+.+++.+|++.+|++||++++++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         225 WPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             HhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence                   0000000 000    000111234677889999999999999999999876

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=2.2e-34  Score=299.20  Aligned_cols=246  Identities=25%  Similarity=0.354  Sum_probs=194.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.|+..+.||+|+||.||+|.. +++.||+|.+....            ....+.+|+.++++++|||++++++++... 
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~------------~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-   71 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV------------TAQAFLEETAVMTKLHHKNLVRLLGVILHN-   71 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc------------hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-
Confidence            5678889999999999999875 57889999874321            135688899999999999999999998654 


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++.... ..+++..+..++.|++.|+.|||+   .+++||||||+||+++.++.+||+|||.+.
T Consensus        72 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~~~H~dl~p~nili~~~~~~kl~Dfg~~~  148 (254)
T cd05083          72 GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLES---KKLVHRDLAARNILVSEDGVAKVSDFGLAR  148 (254)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCcEEECCCccce
Confidence            4789999999999999997643 357999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....      ......+..|+|||++.+..++.++||||||+++|||++ |+.||.....     ........ ..  .
T Consensus       149 ~~~~~------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~-~~--~  214 (254)
T cd05083         149 VGSMG------VDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL-----KEVKECVE-KG--Y  214 (254)
T ss_pred             ecccc------CCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH-----HHHHHHHh-CC--C
Confidence            54221      112234568999999988899999999999999999998 9999865311     11111000 00  0


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                          .....   ......+.+++.+|++.+|++||+++++++.|++
T Consensus       215 ----~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         215 ----RMEPP---EGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             ----CCCCC---CcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence                00011   1223556788889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=2.4e-34  Score=302.96  Aligned_cols=249  Identities=28%  Similarity=0.401  Sum_probs=199.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|+||.||+|.. .++..||+|.+....         .....+.+.+|+.++++++||||+++++++.+.
T Consensus         4 ~~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~---------~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   74 (277)
T cd06641           4 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE---------AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD   74 (277)
T ss_pred             HhhhhheeEeecCCeEEEEEEECCCCcEEEEEEecccc---------chHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeC
Confidence            4567788999999999999965 468999999873221         122346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|.+++...  .+++..+..++.+++.|+.|||+   .+++|+||+|+||+++.++.++++|||++.
T Consensus        75 ~~~~lv~e~~~~~~l~~~i~~~--~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~  149 (277)
T cd06641          75 TKLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAG  149 (277)
T ss_pred             CeEEEEEEeCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHcc---CCeecCCCCHHhEEECCCCCEEEeecccce
Confidence            9999999999999999998764  58999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........++..|+|||++.+..++.++|||||||++|||++|..||.....     ..+... ....    
T Consensus       150 ~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~-----~~~~~~-~~~~----  216 (277)
T cd06641         150 QLTDT---QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHP-----MKVLFL-IPKN----  216 (277)
T ss_pred             ecccc---hhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccch-----HHHHHH-HhcC----
Confidence            65321   1122335678899999999888889999999999999999999999864211     001100 0000    


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        ..+.+..   .....+.+++.+|++.+|.+||++.+++++
T Consensus       217 --~~~~~~~---~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         217 --NPPTLEG---NYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             --CCCCCCc---ccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence              0011111   223456678889999999999999999996

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=2.3e-34  Score=299.83  Aligned_cols=252  Identities=25%  Similarity=0.342  Sum_probs=199.3

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|++|.||+|... +++.||+|.+......     ....+..+.+.+|+.+++.++|+|++++++++.+...
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~-----~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   76 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDG-----QTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDN   76 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEcccc-----ccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCe
Confidence            566788999999999999765 7899999988443211     1123345678999999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++|+||+++++|.+++.... .+++..+..++.|++.|++|||+   .+++|+||+|+||+++.++.+||+|||.+...
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~  152 (258)
T cd06632          77 LYIFLELVPGGSLAKLLKKYG-SFPEPVIRLYTRQILLGLEYLHD---RNTVHRDIKGANILVDTNGVVKLADFGMAKQV  152 (258)
T ss_pred             EEEEEEecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccceec
Confidence            999999999999999998754 58899999999999999999999   89999999999999999999999999998765


Q ss_pred             hccCCCCcceecccccccccCccccccCC-CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...    .......|+..|+|||.+.... ++.++|+||||+++|+|++|+.||....    .......  .....    
T Consensus       153 ~~~----~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~----~~~~~~~--~~~~~----  218 (258)
T cd06632         153 VEF----SFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE----GVAAVFK--IGRSK----  218 (258)
T ss_pred             ccc----ccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc----HHHHHHH--HHhcc----
Confidence            321    1233456889999999987766 8999999999999999999999986531    1000000  00000    


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       ......+   .....+.+++.+|++.+|++||++.+++++
T Consensus       219 -~~~~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  255 (258)
T cd06632         219 -ELPPIPD---HLSDEAKDFILKCLQRDPSLRPTAAELLEH  255 (258)
T ss_pred             -cCCCcCC---CcCHHHHHHHHHHhhcCcccCcCHHHHhcC
Confidence             0001111   123456678889999999999999999864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=4e-34  Score=299.91  Aligned_cols=259  Identities=24%  Similarity=0.394  Sum_probs=202.2

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|++|.||+|.. .+++.||+|++......    ...+....+.+.+|++++++++|+|++++++++.+.+.
T Consensus         2 ~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~----~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   77 (268)
T cd06630           2 WLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNT----SSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSH   77 (268)
T ss_pred             ccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCC----chhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCe
Confidence            66778999999999999954 67899999998543311    12223456789999999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-CCeeecccchhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKV  685 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~Dfg~a~~  685 (840)
                      .++|+||+++++|.+++.+.. .+++..+..++.|++.||+|||+   .+++|+||+|+||+++.++ .++|+|||.+..
T Consensus        78 ~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~ql~~al~~LH~---~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~  153 (268)
T cd06630          78 FNLFVEWMAGGSVSHLLSKYG-AFKEAVIINYTEQLLRGLSYLHE---NQIIHRDVKGANLLIDSTGQRLRIADFGAAAR  153 (268)
T ss_pred             EEEEEeccCCCcHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEcccccccc
Confidence            999999999999999997654 68899999999999999999999   9999999999999998776 589999999877


Q ss_pred             hhccCCC-CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGK-DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....... ........|+..|+|||.+.+..++.++||||+|+++|+|++|+.||...... .....+...         
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~---------  223 (268)
T cd06630         154 LAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHS-NHLALIFKI---------  223 (268)
T ss_pred             cccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCc-chHHHHHHH---------
Confidence            6432111 11223346889999999998888999999999999999999999999643211 111111000         


Q ss_pred             hhcccccCC-CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSG-SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        ......+ ........+.+++.+|++.+|++||++.+++++
T Consensus       224 --~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~  264 (268)
T cd06630         224 --ASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKH  264 (268)
T ss_pred             --hccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhcC
Confidence              0000111 112334567788899999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=3.3e-34  Score=300.65  Aligned_cols=252  Identities=26%  Similarity=0.346  Sum_probs=184.9

Q ss_pred             eeeccCCcEEEEEEeCC---CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceE
Q 003199          533 KVGQGGSGTVYKIDLNS---GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      .||+|+||.||+|...+   ...+|+|.+....         .......+.+|+++++.++|+||+++++++......++
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~---------~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~l   72 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASA---------TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLL   72 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccC---------ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEE
Confidence            59999999999996543   3468888763221         12334678889999999999999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          610 VYEYMPNGNLWDALHKGL----VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ||||+++|+|.+++....    ...++.....++.|++.|++|||+   .+|+||||||+||++++++.+||+|||++..
T Consensus        73 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  149 (269)
T cd05042          73 VLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ---ADFIHSDLALRNCQLTADLSVKIGDYGLALE  149 (269)
T ss_pred             EEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh---cCEecccccHhheEecCCCcEEEeccccccc
Confidence            999999999999997643    234678889999999999999999   9999999999999999999999999999865


Q ss_pred             hhccCCCCcceecccccccccCcccccc-------CCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYS-------SKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      ....+ .........++..|+|||+...       ..++.++|||||||++|||++ |..||......  ....  .. .
T Consensus       150 ~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~--~~~~--~~-~  223 (269)
T cd05042         150 QYPED-YYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDE--QVLK--QV-V  223 (269)
T ss_pred             cccch-heeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHH--HHHH--HH-h
Confidence            42211 1111233345678999998643       356889999999999999999 78888653110  0000  00 0


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                        .........+.....+   ...+.+++..|| .||++||++++|++.|.
T Consensus       224 --~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         224 --REQDIKLPKPQLDLKY---SDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             --hccCccCCCCcccccC---CHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence              0000111111122222   234445666888 59999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=3e-34  Score=299.04  Aligned_cols=250  Identities=30%  Similarity=0.426  Sum_probs=197.3

Q ss_pred             CccCeeeccCCcEEEEEEeCC-----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          529 TEKNKVGQGGSGTVYKIDLNS-----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      +..+.||+|+||.||+|....     +..||+|++.....         ....+.+..|++++..++|+||+++++++.+
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   72 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD---------EQQIEEFLREARIMRKLDHPNIVKLLGVCTE   72 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC---------hHHHHHHHHHHHHHHhcCCCchheEEEEEcC
Confidence            456789999999999996653     38899999843321         1145678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCC-CChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~-~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ....+++|||+++++|.+++...... +++..+..++.|++.|++|||+   .+++||||||+||++++++.++++|||+
T Consensus        73 ~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~---~~~~h~dl~~~nil~~~~~~~~l~dfg~  149 (258)
T smart00219       73 EEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLES---KNFIHRDLAARNCLVGENLVVKISDFGL  149 (258)
T ss_pred             CCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhc---CCeeecccccceEEEccCCeEEEcccCC
Confidence            99999999999999999999875433 8999999999999999999999   8999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +........  .......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||....  ........        
T Consensus       150 ~~~~~~~~~--~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~--~~~~~~~~--------  217 (258)
T smart00219      150 SRDLYDDDY--YKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMS--NEEVLEYL--------  217 (258)
T ss_pred             ceecccccc--cccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHH--------
Confidence            977643211  11112336789999999988889999999999999999998 888886421  11111110        


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                           ..............++.+++.+|+..||++|||+.|+++.|
T Consensus       218 -----~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      218 -----KKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             -----hcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence                 00001111112345677888899999999999999998864

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=1.3e-34  Score=307.00  Aligned_cols=250  Identities=26%  Similarity=0.366  Sum_probs=196.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|.....||+|+||.||++.. .++..||||.+....          ....+.+.+|+.+++.++|+|++++++.+...
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~----------~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~   91 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK----------QQRRELLFNEVVIMRDYHHENVVDMYNSYLVG   91 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecch----------HHHHHHHHHHHHHHHhCCCCcHHHHHHheecC
Confidence            4444456799999999999965 468999999873221          23345688999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++++|.+++...  .+++.++..++.|++.|++|||+   ++|+||||||+||++++++.++|+|||++.
T Consensus        92 ~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kL~dfg~~~  166 (292)
T cd06658          92 DELWVVMEFLEGGALTDIVTHT--RMNEEQIATVCLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCA  166 (292)
T ss_pred             CeEEEEEeCCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEccCcchh
Confidence            9999999999999999988654  58899999999999999999999   899999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........|+..|+|||...+..++.++||||||+++|||++|+.||.....  ...   ...       +.
T Consensus       167 ~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~--~~~---~~~-------~~  231 (292)
T cd06658         167 QVSKE---VPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPP--LQA---MRR-------IR  231 (292)
T ss_pred             hcccc---cccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHH---HHH-------HH
Confidence            65321   1222345688999999999888899999999999999999999999864311  000   000       00


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ......... .......+.+++.+|+..||.+|||+++++++
T Consensus       232 ~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         232 DNLPPRVKD-SHKVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             hcCCCcccc-ccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            111111111 11123356677789999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-34  Score=307.39  Aligned_cols=265  Identities=23%  Similarity=0.324  Sum_probs=195.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..+.||+|++|.||+|..+ +++.||||.+......         .....+.+|++++++++|+||+++++++.+.
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---------~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   75 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEE---------GAPFTAIREASLLKDLKHANIVTLHDIIHTK   75 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEeccccc---------CCchhHHHHHHHHhhCCCcceeeEEEEEecC
Confidence            56788889999999999999655 7899999998543211         1123456899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||++ ++|.+++......+++..+..++.|++.||.|||+   .+++||||||+||++++++.+||+|||+++
T Consensus        76 ~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  151 (291)
T cd07844          76 KTLTLVFEYLD-TDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQ---RRVLHRDLKPQNLLISERGELKLADFGLAR  151 (291)
T ss_pred             CeEEEEEecCC-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCHHHEEEcCCCCEEECcccccc
Confidence            99999999997 59999988765578999999999999999999999   999999999999999999999999999986


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhh-hhhhhhccccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY-WVSIKVDTKEG  762 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~-~~~~~~~~~~~  762 (840)
                      .....   ........++..|+|||++.+ ..++.++||||+|+++|||++|+.||............ +..........
T Consensus       152 ~~~~~---~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (291)
T cd07844         152 AKSVP---SKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEET  228 (291)
T ss_pred             ccCCC---CccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhh
Confidence            54221   111222346789999998865 45789999999999999999999999654211000000 00000000000


Q ss_pred             hhhhc--------------ccccCCCcHH--HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 IMEVL--------------DKKLSGSFRD--EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~~~~~--------------~~~~~~~~~~--~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .....              ...+......  ....+.+++.+|++.+|++||++.|++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~  288 (291)
T cd07844         229 WPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKH  288 (291)
T ss_pred             hhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhcC
Confidence            00000              0000000001  12566788999999999999999998864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=3.8e-34  Score=299.32  Aligned_cols=256  Identities=30%  Similarity=0.427  Sum_probs=201.0

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|+||.||+|.. .+++.||+|.+......        ....+.+.+|++++++++|+||+++++++....
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~   72 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND--------PKTIKEIADEMKVLELLKHPNLVKYYGVEVHRE   72 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc--------hHHHHHHHHHHHHHHhCCCCChhheeeeEecCC
Confidence            467788999999999999965 47899999998544321        234678899999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|+||+++++|.+++.... .+++..+..++.+++.|++|||+   .+++|+||+|+||++++++.+||+|||++..
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~  148 (264)
T cd06626          73 KVYIFMEYCSGGTLEELLEHGR-ILDEHVIRVYTLQLLEGLAYLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAVK  148 (264)
T ss_pred             EEEEEEecCCCCcHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEcccccccc
Confidence            9999999999999999998764 57899999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcc-eecccccccccCccccccCC---CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          686 LQARGGKDST-TTVIAGTYGYLAPEYAYSSK---ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       686 ~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      .......... .....++..|+|||++.+..   .+.++||||||+++||+++|+.||..... .......    .... 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~-~~~~~~~----~~~~-  222 (264)
T cd06626         149 LKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDN-EFQIMFH----VGAG-  222 (264)
T ss_pred             cCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcc-hHHHHHH----HhcC-
Confidence            6442221111 22356788999999987766   88999999999999999999999964311 1001000    0000 


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           ....++. .......+.+++.+|++.+|.+||++.+++.+
T Consensus       223 -----~~~~~~~-~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~  261 (264)
T cd06626         223 -----HKPPIPD-SLQLSPEGKDFLDRCLESDPKKRPTASELLQH  261 (264)
T ss_pred             -----CCCCCCc-ccccCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                 0111111 11224456678889999999999999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=3.2e-34  Score=298.96  Aligned_cols=238  Identities=23%  Similarity=0.336  Sum_probs=186.9

Q ss_pred             CeeeccCCcEEEEEEeCCCc-----------EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          532 NKVGQGGSGTVYKIDLNSGE-----------VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~~~-----------~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      +.||+|+||.||+|...+..           .|++|.+....          .. ...+.+|+.+++.++||||++++++
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----------~~-~~~~~~e~~~l~~l~h~~i~~~~~~   69 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH----------RD-SLAFFETASLMSQLSHKHLVKLYGV   69 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch----------hh-HHHHHHHHHHHHcCCCcchhheeeE
Confidence            36999999999999765332           47777663221          11 5678899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-------
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-------  673 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-------  673 (840)
                      +.. ...++||||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++       
T Consensus        70 ~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dlkp~Nill~~~~~~~~~~~  145 (259)
T cd05037          70 CVR-DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLED---KKLVHGNVCGKNILVARYGLNEGYVP  145 (259)
T ss_pred             Eec-CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhh---CCeecccCccceEEEecCccccCCce
Confidence            988 77899999999999999998765578999999999999999999999   9999999999999999887       


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCccccccC--CCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchh
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS--KATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII  750 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~  750 (840)
                      .+|++|||++.....       .....++..|+|||++.+.  .++.++||||||+++|||++ |..||.....  ....
T Consensus       146 ~~kl~Dfg~a~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~--~~~~  216 (259)
T cd05037         146 FIKLSDPGIPITVLS-------REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSS--SEKE  216 (259)
T ss_pred             eEEeCCCCccccccc-------ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCc--hhHH
Confidence            799999999876532       2234466789999998776  78999999999999999999 5777754311  1111


Q ss_pred             hhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .+..    ..        .....   .....+.+++.+||..+|.+||++.++++.|.
T Consensus       217 ~~~~----~~--------~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         217 RFYQ----DQ--------HRLPM---PDCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             HHHh----cC--------CCCCC---CCchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            1100    00        00000   01156778889999999999999999998874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=3.7e-34  Score=299.96  Aligned_cols=256  Identities=28%  Similarity=0.402  Sum_probs=202.8

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||.|+||+||+|... ++..||+|++......         ...+.+.+|+++++.++|+|++++++.+....
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQ---------TSVDELRKEVQAMSQCNHPNVVKYYTSFVVGD   72 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcc---------hHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCC
Confidence            5778889999999999999754 6889999988433211         13567899999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ..++|+||+++++|.+++....  ..+++..+..++.|++.|++|||+   .+++||||+|+||++++++.++|+|||++
T Consensus        73 ~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~---~~i~h~~l~p~ni~~~~~~~~~l~df~~~  149 (267)
T cd06610          73 ELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS---NGQIHRDIKAGNILLGEDGSVKIADFGVS  149 (267)
T ss_pred             EEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcccchH
Confidence            9999999999999999997642  368999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCC-cceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          684 KVLQARGGKD-STTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       684 ~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ..+....... .......|+..|+|||++... .++.++||||||+++|||++|+.||....... ......   ..   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~-~~~~~~---~~---  222 (267)
T cd06610         150 ASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMK-VLMLTL---QN---  222 (267)
T ss_pred             HHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhh-hHHHHh---cC---
Confidence            8775432221 122445688999999998776 78999999999999999999999997532111 010000   00   


Q ss_pred             chhhhcccccCCC--cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGS--FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~--~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           ........  +......+.+++.+|++.||++||++.+++++
T Consensus       223 -----~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~  264 (267)
T cd06610         223 -----DPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKH  264 (267)
T ss_pred             -----CCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence                 00111111  12334567788889999999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=3.4e-34  Score=301.36  Aligned_cols=256  Identities=25%  Similarity=0.335  Sum_probs=194.8

Q ss_pred             cCccCeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      |...+.||+|+||.||+|...    +++.||||++.....        .....+.+.+|++++++++||||+++++++..
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   72 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIF--------SSSDIEEFLREAACMKEFDHPNVIKLIGVSLR   72 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccC--------ChHHHHHHHHHHHHHhcCCCCCcceEEEEEcc
Confidence            455678999999999999653    468899999843321        12235668899999999999999999998854


Q ss_pred             Cc------cceEEEeecCCCChHHHhhcC-----CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          604 LY------CNLLVYEYMPNGNLWDALHKG-----LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       604 ~~------~~~lV~e~~~~gsL~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      ..      ..++++||+++|+|.+++...     ...+++..+..++.|++.|++|||+   .+|+||||||+||+++++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~nili~~~  149 (273)
T cd05074          73 SRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSS---KNFIHRDLAARNCMLNEN  149 (273)
T ss_pred             CCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccchhhEEEcCC
Confidence            32      236889999999998877432     1357889999999999999999999   899999999999999999


Q ss_pred             CCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhh
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~  751 (840)
                      +.+|++|||+++...... .........+++.|++||.+.+..++.++||||||+++|||++ |+.||.....  .....
T Consensus       150 ~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~--~~~~~  226 (273)
T cd05074         150 MTVCVADFGLSKKIYSGD-YYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN--SEIYN  226 (273)
T ss_pred             CCEEECcccccccccCCc-ceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH--HHHHH
Confidence            999999999998653311 1111223345678999999988889999999999999999999 8888864311  11111


Q ss_pred             hhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      +.   ....       .....   ......+.+++.+|++.+|++||++.++++.|+++
T Consensus       227 ~~---~~~~-------~~~~~---~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         227 YL---IKGN-------RLKQP---PDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             HH---HcCC-------cCCCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            10   0000       00011   12335678889999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=2.1e-34  Score=305.03  Aligned_cols=255  Identities=26%  Similarity=0.345  Sum_probs=194.1

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCY  600 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~  600 (840)
                      .+.++|+..+.||+|+||.||+|.. .+++.+|+|++....           .....+.+|+.+++++ +|+||++++++
T Consensus        15 ~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-----------~~~~~~~~e~~~l~~l~~h~~i~~~~~~   83 (286)
T cd06638          15 DPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-----------DIDEEIEAEYNILKALSDHPNVVKFYGM   83 (286)
T ss_pred             CcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-----------chHHHHHHHHHHHHHHhcCCCeeeeeee
Confidence            3556788889999999999999955 468899999873221           1134577899999999 69999999998


Q ss_pred             Ee-----cCccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          601 FS-----SLYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       601 ~~-----~~~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      +.     .....++||||+++++|.+++..   ....+++..+..++.|++.|+.|||+   .+++||||||+||+++++
T Consensus        84 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~  160 (286)
T cd06638          84 YYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHV---NKTIHRDVKGNNILLTTE  160 (286)
T ss_pred             eeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHh---CCccccCCCHHhEEECCC
Confidence            73     34567999999999999998753   22467899999999999999999999   999999999999999999


Q ss_pred             CCCeeecccchhhhhccCCCCcceecccccccccCcccccc-----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCc
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK  747 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~  747 (840)
                      +.++|+|||+++.....   ........|++.|+|||++..     ..++.++||||+||++|||++|+.||......  
T Consensus       161 ~~~kl~dfg~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~--  235 (286)
T cd06638         161 GGVKLVDFGVSAQLTST---RLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPM--  235 (286)
T ss_pred             CCEEEccCCceeecccC---CCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchh--
Confidence            99999999998765321   112234468999999998753     45788999999999999999999998653110  


Q ss_pred             chhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          748 NIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                        ......  . ........   .+.   .....+.+++.+|++.||++|||+.|++++.
T Consensus       236 --~~~~~~--~-~~~~~~~~---~~~---~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         236 --RALFKI--P-RNPPPTLH---QPE---LWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             --HHHhhc--c-ccCCCccc---CCC---CcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence              000000  0 00000000   011   1123577788899999999999999999874

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=3.4e-34  Score=301.62  Aligned_cols=256  Identities=23%  Similarity=0.366  Sum_probs=199.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      +.|...+.||+|+||.||+|..+      +.+.||+|.+....         .....+.+.+|++++++++|+|++++++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~   75 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTK---------DENLQSEFRRELDMFRKLSHKNVVRLLG   75 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCcc---------chHHHHHHHHHHHHHHhcCCcceeeeEE
Confidence            46778889999999999999754      34679999773322         1223567889999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC--------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL--------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV  671 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~  671 (840)
                      ++.+....++||||+++|+|.+++....        ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.
T Consensus        76 ~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dlkp~Nili~~  152 (275)
T cd05046          76 LCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSN---ARFVHRDLAARNCLVSS  152 (275)
T ss_pred             EECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhh---cCcccCcCccceEEEeC
Confidence            9999899999999999999999997543        158999999999999999999999   89999999999999999


Q ss_pred             CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchh
Q 003199          672 NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII  750 (840)
Q Consensus       672 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~  750 (840)
                      ++.++++|||++......  .........++..|+|||.+.+..++.++||||||+++|||++ |..||.+..  .....
T Consensus       153 ~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~--~~~~~  228 (275)
T cd05046         153 QREVKVSLLSLSKDVYNS--EYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS--DEEVL  228 (275)
T ss_pred             CCcEEEcccccccccCcc--cccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc--hHHHH
Confidence            999999999998654221  1122233456778999999988888999999999999999999 888986421  11111


Q ss_pred             hhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      ...   ....      .......   .....+.+++.+|++.+|++||++.|+++.|.+
T Consensus       229 ~~~---~~~~------~~~~~~~---~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~~  275 (275)
T cd05046         229 NRL---QAGK------LELPVPE---GCPSRLYKLMTRCWAVNPKDRPSFSELVSALGE  275 (275)
T ss_pred             HHH---HcCC------cCCCCCC---CCCHHHHHHHHHHcCCCcccCCCHHHHHHHhcC
Confidence            110   0000      0000111   223467778889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=1.8e-37  Score=324.07  Aligned_cols=349  Identities=30%  Similarity=0.440  Sum_probs=309.6

Q ss_pred             ccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccc-ccCC
Q 003199            8 GTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALH-GQIP   85 (840)
Q Consensus         8 ~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~   85 (840)
                      +.+|+ ...+++++.|.|...++. .+|+.++.|.+|+.|.+++|   .+.++- ..++.|+.|+.+++.+|++. .-+|
T Consensus        22 ~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN---~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP   96 (1255)
T KOG0444|consen   22 DRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHN---QLISVH-GELSDLPRLRSVIVRDNNLKNSGIP   96 (1255)
T ss_pred             CcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhh---hhHhhh-hhhccchhhHHHhhhccccccCCCC
Confidence            56665 778999999999999999 99999999999999999999   555554 34888999999999999996 3467


Q ss_pred             ccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcc-cCCCCCCCeeeccCCcccccCCccccCC
Q 003199           86 ASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEE-LGNLTELTDLDMSVNHLSGKIPESILRL  164 (840)
Q Consensus        86 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l  164 (840)
                      ..+-.|..|+.|||++|+++ ..|..+..-+++-.|+||+|+  ...+|.. |-+|+.|-.||||+|++. .+|..+.++
T Consensus        97 ~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~--IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL  172 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNN--IETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRL  172 (1255)
T ss_pred             chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCc--cccCCchHHHhhHhHhhhccccchhh-hcCHHHHHH
Confidence            77888999999999999999 899999999999999999998  6677764 678999999999999999 677789999


Q ss_pred             CCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCc-ccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhh
Q 003199          165 PKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT-GEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFL  243 (840)
Q Consensus       165 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  243 (840)
                      ..|++|.|++|.+.......+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|||.|.+.                 
T Consensus       173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-----------------  235 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-----------------  235 (1255)
T ss_pred             hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-----------------
Confidence            99999999999987655556667888999999987654 457888999999999999999987                 


Q ss_pred             cccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeee
Q 003199          244 VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISG  323 (840)
Q Consensus       244 l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  323 (840)
                              .+|+.+.++++|+.|+||+|+|+ .+........+|++|+||.|+++ ..|.++..++.|+.|++.+|+++-
T Consensus       236 --------~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  236 --------IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             --------cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc
Confidence                    77888889999999999999998 66667777889999999999998 788899999999999999999873


Q ss_pred             -ccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCcccc
Q 003199          324 -FIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT  394 (840)
Q Consensus       324 -~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  394 (840)
                       -+|..++++..|+.+..++|.+. ..|+.++.+..|+.|.|++|++- ++|+++.-++.|+.|||..|+=-
T Consensus       306 eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  306 EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence             57999999999999999999998 89999999999999999999997 89999999999999999999754

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2e-34  Score=306.25  Aligned_cols=266  Identities=23%  Similarity=0.282  Sum_probs=198.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|..+ +++.||+|.+......        ......+.+|+.++++++||||+++++++...
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~   76 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEK--------EGFPITSLREINILLKLQHPNIVTVKEVVVGS   76 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeecccc--------ccchhhHHHHHHHHHhcCCCCEEEEEEEEEec
Confidence            56788889999999999999765 6899999998543321        12234567899999999999999999998776


Q ss_pred             --ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          605 --YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       605 --~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                        ...++||||++ ++|.+++......+++..+..++.|++.||+|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        77 ~~~~~~lv~e~~~-~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~~l~d~g~  152 (293)
T cd07843          77 NLDKIYMVMEYVE-HDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHD---NWILHRDLKTSNLLLNNRGILKICDFGL  152 (293)
T ss_pred             CCCcEEEEehhcC-cCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCcEEEeecCc
Confidence              88899999997 59999887765568999999999999999999999   8999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc-----------hh
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN-----------II  750 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~-----------~~  750 (840)
                      +......   ........+++.|+|||.+.+. .++.++|+||+|+++|||++|+.||.........           ..
T Consensus       153 ~~~~~~~---~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~  229 (293)
T cd07843         153 AREYGSP---LKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEK  229 (293)
T ss_pred             eeeccCC---ccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchH
Confidence            8766432   1222345578899999988654 4689999999999999999999999753211000           00


Q ss_pred             hhhhhhhccc---cchhhhcccccCCCcHH--HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          751 YWVSIKVDTK---EGIMEVLDKKLSGSFRD--EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       751 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .|........   ..........+...+..  ....+.+++.+|++.+|++|||+.|++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~  290 (293)
T cd07843         230 IWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKH  290 (293)
T ss_pred             HHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhcC
Confidence            0100000000   00000001111111222  24557788889999999999999999865

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=8.5e-35  Score=308.15  Aligned_cols=261  Identities=28%  Similarity=0.365  Sum_probs=198.1

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|+||.||+|... +++.||+|++......        ....+.+.+|+++++.++||||+++++++....
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   73 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDD--------KMVKKIAMREIRMLKQLRHENLVNLIEVFRRKK   73 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCc--------chhhHHHHHHHHHHHhcCCcchhhHHHhcccCC
Confidence            5777889999999999999765 6899999987443211        123456788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|+||++++++..+..... .++|..+..++.|++.|++|||+   .+++||||+|+||++++++.++|+|||++..
T Consensus        74 ~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH~---~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~  149 (286)
T cd07846          74 RLYLVFEFVDHTVLDDLEKYPN-GLDESRVRKYLFQILRGIEFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFART  149 (286)
T ss_pred             eEEEEEecCCccHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCcEEEEeeeeeee
Confidence            9999999999999988776543 58999999999999999999999   8999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh---cccc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV---DTKE  761 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~---~~~~  761 (840)
                      ....   ........++..|+|||++.+ ..++.++||||||+++|||++|+.||.....    ...+.....   ....
T Consensus       150 ~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~----~~~~~~~~~~~~~~~~  222 (286)
T cd07846         150 LAAP---GEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSD----IDQLYHIIKCLGNLIP  222 (286)
T ss_pred             ccCC---ccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCch----HHHHHHHHHHhCCCch
Confidence            5332   122234567889999998865 4578899999999999999999999864321    111100000   0000


Q ss_pred             chhhh----------cccccC------CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEV----------LDKKLS------GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~----------~~~~~~------~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .....          ..+...      .........+.+++.+||+.+|++||++.+++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  283 (286)
T cd07846         223 RHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHH  283 (286)
T ss_pred             hhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcC
Confidence            00000          000000      0011234567889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=310.47  Aligned_cols=250  Identities=24%  Similarity=0.298  Sum_probs=196.3

Q ss_pred             cCccCeeeccCCcEEEEEEeCC-CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNS-GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |.+...||.|+||+||+|..++ +-..|.|++-.          ......+++.-||++++.+.||+||++++.|.-...
T Consensus        34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIet----------kseEELEDylVEIeILa~CdHP~ivkLl~ayy~enk  103 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIET----------KSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENK  103 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcccchhhhhhhhhcc----------cchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCc
Confidence            3445579999999999996653 44556677622          224456788899999999999999999999988999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++..|||.||.+...+-.-+..+.+.++..++++++.||.|||+   ..|+|||||+.|||++-+|.++++|||.+...
T Consensus       104 LwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs---~~iIHRDLKAGNiL~TldGdirLADFGVSAKn  180 (1187)
T KOG0579|consen  104 LWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHS---QNIIHRDLKAGNILLTLDGDIRLADFGVSAKN  180 (1187)
T ss_pred             eEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhh---cchhhhhccccceEEEecCcEeeecccccccc
Confidence            999999999999988877766789999999999999999999999   99999999999999999999999999987543


Q ss_pred             hccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      .   ........+.|||.|||||+..     ..+|++++||||||+.|.||..+.+|-....      +.-+-.++...+
T Consensus       181 ~---~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHheln------pMRVllKiaKSe  251 (1187)
T KOG0579|consen  181 K---STRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELN------PMRVLLKIAKSE  251 (1187)
T ss_pred             h---hHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccc------hHHHHHHHhhcC
Confidence            2   1233456789999999999863     4689999999999999999999999965421      001111111000


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            .+.+ -........+.++..+|+.+||..||+++++++|
T Consensus       252 ------PPTL-lqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  252 ------PPTL-LQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             ------CCcc-cCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhC
Confidence                  1111 0123344556677779999999999999999876

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=6e-35  Score=280.86  Aligned_cols=263  Identities=25%  Similarity=0.317  Sum_probs=204.6

Q ss_pred             hhHHHHHHhcCcc-CeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcc
Q 003199          519 FDQREILEAMTEK-NKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIV  595 (840)
Q Consensus       519 ~~~~~~~~~~~~~-~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv  595 (840)
                      +.+..++++|... ++||-|-.|.|..+ ...+|+.+|+|++...               ....+|++.--.. .|||||
T Consensus        54 ~k~~~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds---------------~KARrEVeLHw~~s~h~~iV  118 (400)
T KOG0604|consen   54 FKEYSITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS---------------PKARREVELHWMASGHPHIV  118 (400)
T ss_pred             hhcccchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC---------------HHHHhHhhhhhhhcCCCceE
Confidence            4455677787764 57999999999997 5568999999988432               2345677765444 699999


Q ss_pred             eeeeEEec----CccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc
Q 003199          596 KLYCYFSS----LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD  670 (840)
Q Consensus       596 ~l~~~~~~----~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~  670 (840)
                      ++++.|..    ..+.++|||.|+||.|++.++..+ ..+++.++.+|+.||+.|+.|||+   ..|.||||||+|+|+.
T Consensus       119 ~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~---~nIAHRDlKpENLLyt  195 (400)
T KOG0604|consen  119 SIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHS---MNIAHRDLKPENLLYT  195 (400)
T ss_pred             EeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh---cchhhccCChhheeee
Confidence            99988744    567789999999999999998764 469999999999999999999999   9999999999999997


Q ss_pred             C---CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCc
Q 003199          671 V---NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK  747 (840)
Q Consensus       671 ~---~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~  747 (840)
                      .   +..+|++|||+|+....    .......+.||.|.|||++...+|+...|+||+||++|-|++|.+||....+.  
T Consensus       196 ~t~~na~lKLtDfGFAK~t~~----~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~--  269 (400)
T KOG0604|consen  196 TTSPNAPLKLTDFGFAKETQE----PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL--  269 (400)
T ss_pred             cCCCCcceEecccccccccCC----CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCc--
Confidence            4   45689999999987532    23445667899999999999999999999999999999999999999764331  


Q ss_pred             chhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          748 NIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      .+..-++.++.  .+..++    ..+++.....+..+++..++..+|++|.|+.+++++=+-..
T Consensus       270 aispgMk~rI~--~gqy~F----P~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~  327 (400)
T KOG0604|consen  270 AISPGMKRRIR--TGQYEF----PEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQ  327 (400)
T ss_pred             cCChhHHhHhh--ccCccC----CChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCchhcc
Confidence            11111111111  111111    23455666677788888999999999999999998865433

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=8.1e-34  Score=297.27  Aligned_cols=252  Identities=22%  Similarity=0.315  Sum_probs=184.0

Q ss_pred             eeeccCCcEEEEEEeCCCc---EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceE
Q 003199          533 KVGQGGSGTVYKIDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~~~~---~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      .||+|+||.||+|...++.   .+++|.+....         .....+.+.+|+.+++.++||||+++++++.+....++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~---------~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~l   72 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANA---------SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLL   72 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCC---------ChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEE
Confidence            5999999999999654443   45566552221         12335678999999999999999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCC---CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          610 VYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      ||||+++|+|.+++.+..   ...++..+..++.|++.||+|||+   .+++||||||+||+++.++.++|+|||++...
T Consensus        73 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~  149 (268)
T cd05086          73 VFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHK---HNFLHSDLALRNCFLTSDLTVKVGDYGIGPSR  149 (268)
T ss_pred             EEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCeeccCCccceEEEcCCccEEeccccccccc
Confidence            999999999999997642   245677788999999999999999   89999999999999999999999999998543


Q ss_pred             hccCCCCcceecccccccccCcccccc-------CCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhc
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYS-------SKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      ... ..........++..|+|||++..       ..++.++||||||+++|||++ |..||....  ...  ..... . 
T Consensus       150 ~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~--~~~--~~~~~-~-  222 (268)
T cd05086         150 YKE-DYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLS--DRE--VLNHV-I-  222 (268)
T ss_pred             Ccc-hhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCC--HHH--HHHHH-H-
Confidence            211 11112234567889999998743       245789999999999999997 567875421  111  01110 0 


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                       ........++.+...+.   ..+.+++..|| .+|++||++++|++.|.
T Consensus       223 -~~~~~~~~~~~~~~~~~---~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         223 -KDQQVKLFKPQLELPYS---ERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             -hhcccccCCCccCCCCc---HHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence             01111122222332333   34555677899 67999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=1.7e-34  Score=306.79  Aligned_cols=249  Identities=26%  Similarity=0.368  Sum_probs=195.6

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |.....||+|+||.||+|.. .+++.||+|++....          ....+.+.+|+.+++.+.|||++++++++...+.
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~----------~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~   92 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRK----------QQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEE   92 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecc----------cchHHHHHHHHHHHHhCCCCchhhhhhheeeCCe
Confidence            34455799999999999955 478999999984322          1123557889999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++|+||+++++|.+++...  .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.++|+|||++...
T Consensus        93 ~~iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~  167 (297)
T cd06659          93 LWVLMEFLQGGALTDIVSQT--RLNEEQIATVCESVLQALCYLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQI  167 (297)
T ss_pred             EEEEEecCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHeEEccCCcEEEeechhHhhc
Confidence            99999999999999987653  58999999999999999999999   99999999999999999999999999998765


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      ...   ........|+..|+|||++.+..++.++|||||||++|||++|+.||.....  .......    ....     
T Consensus       168 ~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--~~~~~~~----~~~~-----  233 (297)
T cd06659         168 SKD---VPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSP--VQAMKRL----RDSP-----  233 (297)
T ss_pred             ccc---cccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHH----hccC-----
Confidence            331   1222345688999999999888899999999999999999999999964211  0000000    0000     


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                       .... .........+.+++.+|++.+|++||++++++++-
T Consensus       234 -~~~~-~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~  272 (297)
T cd06659         234 -PPKL-KNAHKISPVLRDFLERMLTREPQERATAQELLDHP  272 (297)
T ss_pred             -CCCc-cccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhCh
Confidence             0000 00111234566788899999999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=3.6e-34  Score=299.68  Aligned_cols=254  Identities=28%  Similarity=0.393  Sum_probs=202.0

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|++|.||+|... +++.||+|++.....         ....+.+.+|+++++++.||||+++++++....
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---------~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   72 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN---------EAIQKQILRELDILHKCNSPYIVGFYGAFYNNG   72 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC---------hHHHHHHHHHHHHHHHCCCCchhhhheeeecCC
Confidence            4566778999999999999665 689999998844321         134567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|+||+++++|.+++......+++..+..++.|++.|++|+|+.  .+++|+||||+||++++++.++|+|||.+..
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~--~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~  150 (265)
T cd06605          73 DISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEK--HKIIHRDVKPSNILVNSRGQIKLCDFGVSGQ  150 (265)
T ss_pred             EEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCC--CCeecCCCCHHHEEECCCCCEEEeecccchh
Confidence            99999999999999999987645789999999999999999999983  6899999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      .....     .....++..|+|||++.+..++.++||||||+++|+|++|+.||..............+.          
T Consensus       151 ~~~~~-----~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~----------  215 (265)
T cd06605         151 LVNSL-----AKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQY----------  215 (265)
T ss_pred             hHHHH-----hhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHH----------
Confidence            64311     111668889999999998899999999999999999999999997542211211111111          


Q ss_pred             hcccccCCCcHH-HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          766 VLDKKLSGSFRD-EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~-~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ............ ....+.+++.+|+..||++||++.+++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         216 IVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             HhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence            111111111111 34567788889999999999999999865

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=3.1e-34  Score=305.73  Aligned_cols=266  Identities=24%  Similarity=0.326  Sum_probs=198.5

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |...+.||+|++|.||+|.. .+|+.||||.+.......     ........+..|++++++++|+||+++++++.+...
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~-----~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   76 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKE-----AKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSN   76 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEecccccc-----ccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCE
Confidence            56678899999999999965 478999999985443221     112234567789999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++||||+ +|+|.+++......+++..+..++.|+++||+|||+   ++++|+||+|+||+++.++.++|+|||+++..
T Consensus        77 ~~lv~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~  152 (298)
T cd07841          77 INLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADFGLARSF  152 (298)
T ss_pred             EEEEEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCChhhEEEcCCCCEEEccceeeeec
Confidence            99999999 999999998765468999999999999999999999   99999999999999999999999999999766


Q ss_pred             hccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh-hcccc---
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK-VDTKE---  761 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~-~~~~~---  761 (840)
                      ...   ........+++.|+|||.+.+ ..++.++|||||||++|||++|.+||.+.... .......... .....   
T Consensus       153 ~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  228 (298)
T cd07841         153 GSP---NRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDI-DQLGKIFEALGTPTEENWP  228 (298)
T ss_pred             cCC---CccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccH-HHHHHHHHHcCCCchhhhh
Confidence            432   112233456788999998855 45789999999999999999998887653211 0000000000 00000   


Q ss_pred             ---chhhhcccc------cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 ---GIMEVLDKK------LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ---~~~~~~~~~------~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         .........      ...........+.+++.+|++.||++|||++|++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         229 GVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             hcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence               000000000      000112234567889999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=8.7e-34  Score=303.31  Aligned_cols=252  Identities=29%  Similarity=0.378  Sum_probs=196.8

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .+.|...+.||+|+||.||+|... +|+.||+|++......       .....+.+.+|+++++.++|||++++++++.+
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~-------~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~   86 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQ-------SNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLR   86 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccC-------cHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEe
Confidence            355778889999999999999654 6899999988433211       12334678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++|+||+. |++.+.+......+++..+..++.|++.||.|||+   .+++||||+|+||++++++.++|+|||++
T Consensus        87 ~~~~~lv~e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~---~~i~H~dl~p~nIl~~~~~~~kL~dfg~~  162 (307)
T cd06607          87 EHTAWLVMEYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLHS---HERIHRDIKAGNILLTEPGTVKLADFGSA  162 (307)
T ss_pred             CCeEEEEHHhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEECCCCCEEEeecCcc
Confidence            999999999996 67777776544568999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      .....       .....+++.|+|||++.   ...++.++||||||+++|||++|+.||.....  ......    ....
T Consensus       163 ~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~--~~~~~~----~~~~  229 (307)
T cd06607         163 SLVSP-------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALYH----IAQN  229 (307)
T ss_pred             eecCC-------CCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccH--HHHHHH----HhcC
Confidence            65422       12346788999999874   45688999999999999999999999864311  000000    0000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .      ....  ........+.+++.+||+.+|++||++.+++.+..
T Consensus       230 ~------~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~  269 (307)
T cd06607         230 D------SPTL--SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRF  269 (307)
T ss_pred             C------CCCC--CchhhCHHHHHHHHHHhcCChhhCcCHHHHhcChh
Confidence            0      0000  01123446778888999999999999999998643

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.9e-38  Score=314.87  Aligned_cols=378  Identities=28%  Similarity=0.413  Sum_probs=311.1

Q ss_pred             ccccccccCCCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccc
Q 003199            2 SFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALH   81 (840)
Q Consensus         2 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~   81 (840)
                      ++|.+....+++..+.+|+.|+++.|.+. ++|+.++.+-.|+.|+..+|   .+.++|++ +.++.+|..|++.+|.++
T Consensus        99 s~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N---~i~slp~~-~~~~~~l~~l~~~~n~l~  173 (565)
T KOG0472|consen   99 SHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNN---QISSLPED-MVNLSKLSKLDLEGNKLK  173 (565)
T ss_pred             ccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccc---ccccCchH-HHHHHHHHHhhccccchh
Confidence            45556655666888899999999999998 88888999999999999999   67777765 778889999999999998


Q ss_pred             ccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccc
Q 003199           82 GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI  161 (840)
Q Consensus        82 ~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  161 (840)
                      ...|..+. ++.|++||+-.|.++ .+|+.++.+.+|..|+|..|+  ...+| .|.++..|.+|+++.|+|. .+|...
T Consensus       174 ~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk--i~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~  247 (565)
T KOG0472|consen  174 ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK--IRFLP-EFPGCSLLKELHVGENQIE-MLPAEH  247 (565)
T ss_pred             hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc--cccCC-CCCccHHHHHHHhcccHHH-hhHHHH
Confidence            55444444 999999999999998 889999999999999999998  55677 7899999999999999999 666555


Q ss_pred             c-CCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccC-----------
Q 003199          162 L-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPL-----------  229 (840)
Q Consensus       162 ~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----------  229 (840)
                      . .+++|.+|||+.|+++ ..|+.++-+.+|+.||+++|.|+ .+|..++++ +|+.|-+.+|.+..+-           
T Consensus       248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~v  324 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEV  324 (565)
T ss_pred             hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHH
Confidence            4 7999999999999998 67888899999999999999999 678899999 9999999999875310           


Q ss_pred             --------------------------Cc-cc---cCCCCchhh--------------------------hcccccccccC
Q 003199          230 --------------------------PA-KV---CSRGKLQYF--------------------------LVLQNMFSGVL  253 (840)
Q Consensus       230 --------------------------~~-~~---~~l~~L~~L--------------------------~l~~n~~~~~~  253 (840)
                                                +. .|   ...-+.+.|                          +++.|++. .+
T Consensus       325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-el  403 (565)
T KOG0472|consen  325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-EL  403 (565)
T ss_pred             HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hh
Confidence                                      00 00   011223333                          34444444 34


Q ss_pred             CcccccccCC-ceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhccc
Q 003199          254 PDSLARCKNL-LRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRA  332 (840)
Q Consensus       254 ~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  332 (840)
                      |..+..++.+ +.+.+++|.+. .+|..+..+++|..|+|++|-+. .+|..++.+..|+.|+++.|++. .+|..+..+
T Consensus       404 Pk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~l  480 (565)
T KOG0472|consen  404 PKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYEL  480 (565)
T ss_pred             hhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhH
Confidence            4444444443 45677777776 88999999999999999999998 46777888888999999999998 889999999


Q ss_pred             CcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCch
Q 003199          333 ISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPES  400 (840)
Q Consensus       333 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~  400 (840)
                      ..++.+-.++|++....|..+.+|++|..|||.+|.|. .+|..+++|++|++|+|+||+|.  .|..
T Consensus       481 q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  481 QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             HHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            99999999999999777778999999999999999998 78889999999999999999998  4544

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=3.8e-34  Score=303.53  Aligned_cols=247  Identities=29%  Similarity=0.402  Sum_probs=199.1

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|++|.||+|... +++.||+|++.....       ......+.+.+|+++++++.||||+++++++.+..
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   74 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKI-------VKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDS   74 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHh-------hhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCC
Confidence            5777889999999999999654 689999998843221       11233567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+++||||+|+||++++++.+||+|||+++.
T Consensus        75 ~~~~v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~qil~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~dfg~~~~  150 (290)
T cd05580          75 NLYLVMEYVPGGELFSHLRKSG-RFPEPVARFYAAQVVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKR  150 (290)
T ss_pred             eEEEEEecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEeeCCCccc
Confidence            9999999999999999998764 68999999999999999999999   9999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ....      .....|++.|+|||.+.+...+.++||||||+++|+|++|+.||....    ....+... ...      
T Consensus       151 ~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~~-~~~------  213 (290)
T cd05580         151 VKGR------TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN----PIQIYEKI-LEG------  213 (290)
T ss_pred             cCCC------CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHH-hcC------
Confidence            5331      234568899999999988888999999999999999999999996532    00001000 000      


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                        ...++...   ...+.+++.+|+..||.+||     +++|++++
T Consensus       214 --~~~~~~~~---~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~  254 (290)
T cd05580         214 --KVRFPSFF---SPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNH  254 (290)
T ss_pred             --CccCCccC---CHHHHHHHHHHccCCHHHccCcccCCHHHHHcC
Confidence              01112222   34566788899999999999     78888765

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9e-35  Score=327.26  Aligned_cols=254  Identities=28%  Similarity=0.442  Sum_probs=195.6

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      -..+|++.+.||+|+||.||+++.+ ||+.+|||++....         ..+....+.+|++.++++.|||||+++..|.
T Consensus       477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~---------s~~~~skI~rEVk~LArLnHpNVVRYysAWV  547 (1351)
T KOG1035|consen  477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA---------SDKLYSKILREVKLLARLNHPNVVRYYSAWV  547 (1351)
T ss_pred             HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch---------HHHHHHHHHHHHHHHhhcCCcceeeeehhhh
Confidence            5567888899999999999999776 89999999985443         2345677899999999999999999974320


Q ss_pred             cC------------------------------------------------------------------------------
Q 003199          603 SL------------------------------------------------------------------------------  604 (840)
Q Consensus       603 ~~------------------------------------------------------------------------------  604 (840)
                      +.                                                                              
T Consensus       548 Es~~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg  627 (1351)
T KOG1035|consen  548 ESTAELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDG  627 (1351)
T ss_pred             ccCCccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccc
Confidence            00                                                                              


Q ss_pred             -----------------------------------------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHH
Q 003199          605 -----------------------------------------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA  643 (840)
Q Consensus       605 -----------------------------------------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~  643 (840)
                                                               ...||-||||+...+.+.++.+...-.-...+.++++|+
T Consensus       628 ~~~S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIl  707 (1351)
T KOG1035|consen  628 RNLSNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREIL  707 (1351)
T ss_pred             cccccccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHH
Confidence                                                     123678999999888888887643224678899999999


Q ss_pred             HHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhh------c---------cCCCCcceecccccccccCc
Q 003199          644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ------A---------RGGKDSTTTVIAGTYGYLAP  708 (840)
Q Consensus       644 ~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~------~---------~~~~~~~~~~~~gt~~y~aP  708 (840)
                      +||.|+|+   +|||||||||.||++|++..|||+|||+|+...      +         .+..+...+..+||.-|+||
T Consensus       708 EGLaYIH~---~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAP  784 (1351)
T KOG1035|consen  708 EGLAYIHD---QGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAP  784 (1351)
T ss_pred             HHHHHHHh---CceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecH
Confidence            99999999   999999999999999999999999999998832      0         11222345678899999999


Q ss_pred             cccccCC---CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCC---cHHHHHHH
Q 003199          709 EYAYSSK---ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGS---FRDEMIQV  782 (840)
Q Consensus       709 E~~~~~~---~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l  782 (840)
                      |.+.+..   |+.|+|+||+|||++||+.   ||...              +.....+..+-+..++..   +.+....-
T Consensus       785 Ell~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~Ts--------------MERa~iL~~LR~g~iP~~~~f~~~~~~~e  847 (1351)
T KOG1035|consen  785 ELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTS--------------MERASILTNLRKGSIPEPADFFDPEHPEE  847 (1351)
T ss_pred             HHhcccccccccchhhhHHHHHHHHHHhc---cCCch--------------HHHHHHHHhcccCCCCCCcccccccchHH
Confidence            9987654   9999999999999999995   56431              111111222223333332   34455556


Q ss_pred             HHHHHHccCCCCCCCCCHHHHHHH
Q 003199          783 LRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       783 ~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+++.++++.||.+||||.|+++.
T Consensus       848 ~slI~~Ll~hdP~kRPtA~eLL~s  871 (1351)
T KOG1035|consen  848 ASLIRWLLSHDPSKRPTATELLNS  871 (1351)
T ss_pred             HHHHHHHhcCCCccCCCHHHHhhc
Confidence            778889999999999999999863

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=2.1e-34  Score=300.17  Aligned_cols=251  Identities=24%  Similarity=0.321  Sum_probs=200.5

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||.|+||.||+|... +++.||+|.+.....       ......+.+.+|++++++++||||+++++++.+..
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-------~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   73 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKC-------VEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEE   73 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhh-------cchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCC
Confidence            3677889999999999999665 689999999853321       11234578899999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|+||+++++|.+++... ..+++..+..++.|+++||.|||+   .+++|+||+|+||++++++.++|+|||.+..
T Consensus        74 ~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~  149 (258)
T cd05578          74 NMYLVVDLLLGGDLRYHLSQK-VKFSEEQVKFWICEIVLALEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIATK  149 (258)
T ss_pred             eEEEEEeCCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEEcCCCCEEEeecccccc
Confidence            999999999999999999876 378999999999999999999999   8999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ....    .......|+..|+|||.+.+..++.++|+||||+++|+|++|+.||......   ...+.......      
T Consensus       150 ~~~~----~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~------  216 (258)
T cd05578         150 VTPD----TLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT---IRDQIRAKQET------  216 (258)
T ss_pred             cCCC----ccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc---HHHHHHHHhcc------
Confidence            5331    1233456888999999998888999999999999999999999999754221   11111100000      


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH--HHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM--NEVVQ  805 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~--~evl~  805 (840)
                       .....+   ......+.+++.+||+.||.+||++  +|+++
T Consensus       217 -~~~~~~---~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~  254 (258)
T cd05578         217 -ADVLYP---ATWSTEAIDAINKLLERDPQKRLGDNLKDLKN  254 (258)
T ss_pred             -ccccCc---ccCcHHHHHHHHHHccCChhHcCCccHHHHhc
Confidence             001111   1223567788889999999999999  66654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=3e-34  Score=298.82  Aligned_cols=251  Identities=26%  Similarity=0.365  Sum_probs=197.6

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|+||.||+|..+ +|..||+|.+......        ....+.+.+|+++++.++|+|++++++++....
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~   72 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMP--------VKEKEASKKEVILLAKMKHPNIVTFFASFQENG   72 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhcc--------chhhHHHHHHHHHHHhCCCCChhhhhheeccCC
Confidence            3667789999999999999665 6889999988443211        122456788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC-Ceeecccch
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ-PKVADFGIA  683 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~-~kl~Dfg~a  683 (840)
                      ..++|+||+++++|.+++.... ..+++..+..++.|++.|++|||+   .+++|+||||+||++++++. ++++|||.+
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~~~l~d~~~~  149 (257)
T cd08225          73 RLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGIA  149 (257)
T ss_pred             eEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEcCCCCeEEecccccc
Confidence            9999999999999999987643 357999999999999999999999   89999999999999998864 699999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ......   ........|++.|+|||+..+..++.++||||||+++|||++|+.||....     ...+...        
T Consensus       150 ~~~~~~---~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~--------  213 (257)
T cd08225         150 RQLNDS---MELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN-----LHQLVLK--------  213 (257)
T ss_pred             hhccCC---cccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-----HHHHHHH--------
Confidence            766431   112233468899999999988889999999999999999999999986421     1111111        


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        ................+.+++.+|+..+|++|||+.|++++
T Consensus       214 --~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         214 --ICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             --HhcccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence              11111111111223457778889999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.2e-35  Score=311.60  Aligned_cols=264  Identities=28%  Similarity=0.374  Sum_probs=200.6

Q ss_pred             CccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC---
Q 003199          529 TEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL---  604 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~---  604 (840)
                      ...+.||+|+||.||+|+ ..+|+.||||.+....         .....+...+|++++++++|+|||++++.-++.   
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~---------~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~   86 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKES---------SLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLG   86 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhc---------ccchHHHHHHHHHHHHHcCchhhhhhcccCCccccC
Confidence            345679999999999997 5689999999986543         233456788999999999999999998875443   


Q ss_pred             ---ccceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc--CCCC--C
Q 003199          605 ---YCNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD--VNYQ--P  675 (840)
Q Consensus       605 ---~~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~--~~~~--~  675 (840)
                         ....+|||||.+|||+..+.+..  ..+++.+.+.+..+++.||.|||+   ++||||||||.||++-  ++|+  .
T Consensus        87 ~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrE---n~IvHRDlKP~NIvl~~Gedgq~Iy  163 (732)
T KOG4250|consen   87 LVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRE---NGIVHRDLKPGNIVLQIGEDGQSIY  163 (732)
T ss_pred             cccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHH---cCceeccCCCCcEEEeecCCCceEE
Confidence               35589999999999999998753  679999999999999999999999   9999999999999984  3343  6


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCc-chhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK-NIIYWV  753 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-~~~~~~  753 (840)
                      ||+|||.|+.+.+    +......+||+.|.+||.... +.|+..+|.|||||++||++||..||.-..+... ....|.
T Consensus       164 KLtDfG~Arel~d----~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~  239 (732)
T KOG4250|consen  164 KLTDFGAARELDD----NSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWH  239 (732)
T ss_pred             eeecccccccCCC----CCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhh
Confidence            9999999998743    447788999999999999884 7899999999999999999999999975433322 223344


Q ss_pred             hhhhccccchhhhcccccCC-------------CcHHHHHHHHHHHHHccCCCCCCCC--CHHHHHHHhhh
Q 003199          754 SIKVDTKEGIMEVLDKKLSG-------------SFRDEMIQVLRIAIRCTSKSPATRP--TMNEVVQLLAE  809 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~l~~~cl~~dP~~Rp--s~~evl~~L~~  809 (840)
                      ....+.. .+........++             ........+.+....++..+|++|.  ...+....+.+
T Consensus       240 ~~tkkp~-~v~i~~~~~eNgpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~~~~~~~~Fa~~~d  309 (732)
T KOG4250|consen  240 IITKKPS-GVAIGAQEEENGPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRGHEGFDRFFAEVDD  309 (732)
T ss_pred             hhccCCC-ceeEeeecccCCceeeeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhCCCCcchHHHHHHH
Confidence            3322221 122222222211             0123344556666678888999998  55555554443

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=5.7e-34  Score=302.49  Aligned_cols=265  Identities=22%  Similarity=0.274  Sum_probs=194.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|+||.||+|.. .+|+.||+|++......         .....+.+|+.+++.++|+||+++.+++...
T Consensus         5 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---------~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~   75 (291)
T cd07870           5 TSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEE---------GVPFTAIREASLLKGLKHANIVLLHDIIHTK   75 (291)
T ss_pred             ceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcC---------CCcHHHHHHHHHHHhcCCCCEeEEEEEEecC
Confidence            5678889999999999999955 47899999998543211         1123466899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|+||+. +++.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        76 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  151 (291)
T cd07870          76 ETLTFVFEYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHG---QHILHRDLKPQNLLISYLGELKLADFGLAR  151 (291)
T ss_pred             CeEEEEEeccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEEcCCCcEEEecccccc
Confidence            99999999995 78877776554467888999999999999999999   899999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhh-hhhhhhcc---
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY-WVSIKVDT---  759 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~-~~~~~~~~---  759 (840)
                      .....   ........+++.|+|||.+.+. .++.++||||||+++|||++|+.||+........+.. |.......   
T Consensus       152 ~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~  228 (291)
T cd07870         152 AKSIP---SQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDT  228 (291)
T ss_pred             ccCCC---CCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhh
Confidence            54321   1122334578899999988654 5788999999999999999999999753221111000 00000000   


Q ss_pred             -------ccchhhhcccccCCCcH------HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 -------KEGIMEVLDKKLSGSFR------DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 -------~~~~~~~~~~~~~~~~~------~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                             .................      .....+.+++.+|+..||++|||+.|++.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h  288 (291)
T cd07870         229 WPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALLH  288 (291)
T ss_pred             hhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhcC
Confidence                   00000000000011110      113456788889999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=3.2e-34  Score=303.36  Aligned_cols=263  Identities=25%  Similarity=0.331  Sum_probs=194.9

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||.|++|.||+|... +|+.||||++......        ....+.+.+|++++++++||||+++++++.+...
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   73 (284)
T cd07860           2 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET--------EGVPSTAIREISLLKELNHPNIVKLLDVIHTENK   73 (284)
T ss_pred             ceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccc--------cccchHHHHHHHHHHhcCCCCCcchhhhcccCCc
Confidence            677889999999999999654 7899999988533211        1223568889999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          607 NLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      .++||||+. ++|.+++... ...+++..+..++.|++.|++|||+   .+++||||+|+||++++++.+||+|||++..
T Consensus        74 ~~~v~e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~---~~i~H~~l~p~nill~~~~~~~l~dfg~~~~  149 (284)
T cd07860          74 LYLVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARA  149 (284)
T ss_pred             EEEEeeccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEeeccchhh
Confidence            999999995 6898888654 2468999999999999999999999   9999999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCC-CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc--
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG--  762 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~--  762 (840)
                      ...   .........++..|+|||.+.+.. ++.++||||||+++|||+||+.||...... ................  
T Consensus       150 ~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~  225 (284)
T cd07860         150 FGV---PVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI-DQLFRIFRTLGTPDEVVW  225 (284)
T ss_pred             ccc---CccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHhCCCChhhh
Confidence            532   112223345688999999886644 588999999999999999999999753211 1111000000000000  


Q ss_pred             --------hhhhcccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 --------IMEVLDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 --------~~~~~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                              .............    ......+.+++.+|++.||++||++++++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  281 (284)
T cd07860         226 PGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAH  281 (284)
T ss_pred             hhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcC
Confidence                    0000000001111    1123456788999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.3e-34  Score=305.94  Aligned_cols=255  Identities=25%  Similarity=0.331  Sum_probs=200.5

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|++|.||+|... +++.||+|.+.....       ......+.+.+|+++++.++|+||+++++.+....
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   74 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEM-------IKRNKVKRVLTEQEILATLDHPFLPTLYASFQTET   74 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEecccc-------chHHHHHHHHHHHHHHHhCCCCCchhheeeeecCC
Confidence            5777889999999999999665 589999999854321       11234567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++... ...+++..+..++.|++.||+|||+   .+++||||||+||+++.++.++|+|||++.
T Consensus        75 ~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~  151 (316)
T cd05574          75 YLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHL---LGIVYRDLKPENILLHESGHIMLSDFDLSK  151 (316)
T ss_pred             EEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChHHeEEcCCCCEEEeecchhh
Confidence            999999999999999998764 2468999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCC--------------------------cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCC
Q 003199          685 VLQARGGKD--------------------------STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP  738 (840)
Q Consensus       685 ~~~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p  738 (840)
                      .........                          .......||..|+|||++.+..++.++||||||+++|+|++|+.|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~p  231 (316)
T cd05574         152 QSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTP  231 (316)
T ss_pred             cccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCC
Confidence            543211100                          011234688899999999988899999999999999999999999


Q ss_pred             CCCCCCCCcchhhhhhhhhccccchhhhccccc-CCCcHHHHHHHHHHHHHccCCCCCCCCC----HHHHHHH
Q 003199          739 VEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKL-SGSFRDEMIQVLRIAIRCTSKSPATRPT----MNEVVQL  806 (840)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rps----~~evl~~  806 (840)
                      |......    ..+.           ....... ..........+.+++.+|+..||++||+    +.|++++
T Consensus       232 f~~~~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~  289 (316)
T cd05574         232 FKGSNRD----ETFS-----------NILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQH  289 (316)
T ss_pred             CCCCchH----HHHH-----------HHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcC
Confidence            9753211    0111           1111111 0111114466778888999999999999    7777764

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=7.7e-34  Score=301.29  Aligned_cols=250  Identities=26%  Similarity=0.365  Sum_probs=199.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|...+.||+|+||.||+|.. .+++.||+|.+....          ....+.+.+|+.+++.++|||++++++++...
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~----------~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~   88 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQ----------QPKKELIINEILVMRENKHPNIVNYLDSYLVG   88 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEecccc----------chHHHHHHHHHHHHhhcCCCCeeehhheeeeC
Confidence            5778889999999999999954 478899999874221          12245688899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++|+||+++++|.+++.+.  .+++.++..++.|++.|+.|||+   ++++||||||+||+++.++.++|+|||++.
T Consensus        89 ~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~l~~al~~LH~---~gi~H~dL~p~Nili~~~~~~kL~dfg~~~  163 (293)
T cd06647          89 DELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (293)
T ss_pred             CcEEEEEecCCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHh---CCEeeccCCHHHEEEcCCCCEEEccCccee
Confidence            9999999999999999999764  57899999999999999999999   999999999999999999999999999887


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........|++.|+|||.+....++.++||||||+++||+++|+.||........ ....   ... .    
T Consensus       164 ~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~-~~~~---~~~-~----  231 (293)
T cd06647         164 QITPE---QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA-LYLI---ATN-G----  231 (293)
T ss_pred             ccccc---ccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhh-eeeh---hcC-C----
Confidence            65432   1122334688899999999888899999999999999999999999975321110 0000   000 0    


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         .... .........+.+++.+||..+|++||++.+++.+
T Consensus       232 ---~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         232 ---TPEL-QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             ---CCCC-CCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence               0000 0111233456678889999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.1e-33  Score=297.33  Aligned_cols=261  Identities=29%  Similarity=0.358  Sum_probs=198.2

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC-
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-  604 (840)
                      +|...+.||.|++|.||+|.. .+++.||+|.+.....         ......+.+|++++++++||||+++++++.+. 
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   72 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN---------PDLQKQILRELEINKSCKSPYIVKYYGAFLDES   72 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc---------hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccC
Confidence            467788999999999999966 4689999998853221         13356788999999999999999999988653 


Q ss_pred             -ccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          605 -YCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       605 -~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                       ...++||||+++++|.+++..   ....+++..+..++.|++.||+|||+   .+++|+||+|+||++++++.++|+||
T Consensus        73 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~---~~i~H~dl~~~nil~~~~~~~~l~df  149 (287)
T cd06621          73 SSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDF  149 (287)
T ss_pred             CCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecCCeEEEeec
Confidence             467999999999999887653   23457889999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |++......     ......++..|+|||.+.+..++.++||||+|+++|||++|+.||.....................
T Consensus       150 g~~~~~~~~-----~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~  224 (287)
T cd06621         150 GVSGELVNS-----LAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMP  224 (287)
T ss_pred             ccccccccc-----ccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCC
Confidence            998754321     112345788999999998889999999999999999999999999754221111111111111100


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .   ........ .-......+.+++.+|++.+|++|||+.|++++-.
T Consensus       225 ~---~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~~  268 (287)
T cd06621         225 N---PELKDEPG-NGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPW  268 (287)
T ss_pred             c---hhhccCCC-CCCchHHHHHHHHHHHcCCCcccCCCHHHHHhCcc
Confidence            0   00000000 00123456778899999999999999999998643

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=8.7e-34  Score=299.76  Aligned_cols=259  Identities=22%  Similarity=0.256  Sum_probs=191.4

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecC-
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSL-  604 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~-  604 (840)
                      |+..+.||+|+||.||+|.. .+++.||+|++......        .. .....+|+.++.++. |+|++++++++.+. 
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~--------~~-~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   71 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKS--------LE-QVNNLREIQALRRLSPHPNILRLIEVLFDRK   71 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCC--------ch-hhhHHHHHHHHhhcCCCCCccceEEEEecCC
Confidence            45677899999999999965 47899999988543211        01 123346888898885 99999999999887 


Q ss_pred             -ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 -YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 -~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                       +..++|+||++ |++.+.+......++|.++..++.|++.||+|||+   .+++||||+|+||+++. +.+||+|||++
T Consensus        72 ~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~p~ni~l~~-~~~kl~dfg~~  146 (282)
T cd07831          72 TGRLALVFELMD-MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHR---NGIFHRDIKPENILIKD-DILKLADFGSC  146 (282)
T ss_pred             CCcEEEEEecCC-ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEcC-CCeEEEecccc
Confidence             88899999996 58888887655578999999999999999999999   99999999999999999 99999999999


Q ss_pred             hhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh-cccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV-DTKE  761 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~  761 (840)
                      +.....    .......++..|+|||+... ..++.++||||+||++|||++|+.||......  ....+..... ....
T Consensus       147 ~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~--~~~~~~~~~~~~~~~  220 (282)
T cd07831         147 RGIYSK----PPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNEL--DQIAKIHDVLGTPDA  220 (282)
T ss_pred             cccccC----CCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHH--HHHHHHHHHcCCCCH
Confidence            765321    12223457889999997644 55788999999999999999999999753211  1111110000 0000


Q ss_pred             ch---------hhh-----cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GI---------MEV-----LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~---------~~~-----~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+         ...     ....+..........+.+++.+|++.+|++||++.+++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  279 (282)
T cd07831         221 EVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRH  279 (282)
T ss_pred             HHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhC
Confidence            00         000     0000000011235678889999999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-34  Score=312.79  Aligned_cols=265  Identities=22%  Similarity=0.325  Sum_probs=195.0

Q ss_pred             HHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|...+.||+|+||.||+|. ..+|+.||||++....         .......+.+|+.++++++|+||+++++++..
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~   74 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFE---------HQTFCQRTLREIKILRRFKHENIIGILDIIRP   74 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccc---------cchhHHHHHHHHHHHHhCCCCCcCchhheeec
Confidence            3578888999999999999995 4578999999884221         11234567789999999999999999988754


Q ss_pred             C-----ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          604 L-----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       604 ~-----~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      .     ...++|+||++ +++.+.+...  .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+
T Consensus        75 ~~~~~~~~~~lv~e~~~-~~l~~~~~~~--~l~~~~~~~i~~ql~~aL~~LH~---~~ivH~dlkp~Nill~~~~~~kl~  148 (336)
T cd07849          75 PSFESFNDVYIVQELME-TDLYKLIKTQ--HLSNDHIQYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKIC  148 (336)
T ss_pred             ccccccceEEEEehhcc-cCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEEC
Confidence            3     34689999996 5888877653  68999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      |||++.................|++.|+|||.+.+ ..++.++||||+||++|||++|+.||.+...  ...........
T Consensus       149 dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~--~~~~~~~~~~~  226 (336)
T cd07849         149 DFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDY--LHQLNLILGVL  226 (336)
T ss_pred             cccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHc
Confidence            99998765432222222234568899999998654 5689999999999999999999999965311  00000000000


Q ss_pred             c--cccchhhhcc-----------cccCCC----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 D--TKEGIMEVLD-----------KKLSGS----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ~--~~~~~~~~~~-----------~~~~~~----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .  ..+.......           ......    ......++.+++.+|++.||++||++.|++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         227 GTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             CCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            0  0000000000           000000    11224567889999999999999999999998

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=9.6e-34  Score=300.77  Aligned_cols=253  Identities=27%  Similarity=0.373  Sum_probs=193.8

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      +.++|...+.||+|+||.||+|.. .+++.+|+|++....           .....+.+|+.+++++ +|||++++++++
T Consensus        20 ~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-----------~~~~~~~~e~~~l~~l~~h~ni~~~~~~~   88 (291)
T cd06639          20 PTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-----------DVDEEIEAEYNILQSLPNHPNVVKFYGMF   88 (291)
T ss_pred             CCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-----------cHHHHHHHHHHHHHHhcCCCCeEEEEEEE
Confidence            356788889999999999999965 578999999874321           1134567889999998 799999999998


Q ss_pred             ecC-----ccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          602 SSL-----YCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       602 ~~~-----~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      ...     ...++||||+++++|.++++.   ....+++..+..++.|++.||+|||+   .+++||||||+||+++.++
T Consensus        89 ~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~nili~~~~  165 (291)
T cd06639          89 YKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHN---NRIIHRDVKGNNILLTTEG  165 (291)
T ss_pred             EeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCC
Confidence            653     357899999999999998863   23468999999999999999999999   9999999999999999999


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCccccccC-----CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-----KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                      .+||+|||++......   ........|+..|+|||.+...     .++.++|||||||++|||++|+.||...... ..
T Consensus       166 ~~kl~dfg~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~-~~  241 (291)
T cd06639         166 GVKLVDFGVSAQLTST---RLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPV-KT  241 (291)
T ss_pred             CEEEeecccchhcccc---cccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHH-HH
Confidence            9999999998765431   1112334688899999987543     3688999999999999999999999753110 11


Q ss_pred             hhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...+   ....        .... .........+.+++.+|++.+|++||++.|++++
T Consensus       242 ~~~~---~~~~--------~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         242 LFKI---PRNP--------PPTL-LHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             HHHH---hcCC--------CCCC-CcccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            1000   0000        0000 0011223457788889999999999999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=7.4e-34  Score=300.21  Aligned_cols=252  Identities=25%  Similarity=0.342  Sum_probs=193.8

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      ....|+..+.||.|+||.||+|.. .+++.||+|++....           .....+..|+.++.++ .|+|++++++++
T Consensus        14 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-----------~~~~~~~~e~~~l~~~~~h~~i~~~~~~~   82 (282)
T cd06636          14 PAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-----------DEEEEIKLEINMLKKYSHHRNIATYYGAF   82 (282)
T ss_pred             hhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-----------HHHHHHHHHHHHHHHhcCCCcEEEEeeeh
Confidence            446778888999999999999965 568999999873321           1234577899999998 699999999998


Q ss_pred             ec------CccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          602 SS------LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       602 ~~------~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      ..      ....++||||+++|+|.+++.... ..+++..+..++.|++.|++|||+   .+++||||+|+||++++++.
T Consensus        83 ~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dl~~~nili~~~~~  159 (282)
T cd06636          83 IKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHA---HKVIHRDIKGQNVLLTENAE  159 (282)
T ss_pred             hcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCC
Confidence            43      456799999999999999887642 357888899999999999999999   99999999999999999999


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcch
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI  749 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~  749 (840)
                      ++|+|||++......   ........|++.|+|||.+.     ...++.++|||||||++|||++|+.||........ .
T Consensus       160 ~~l~dfg~~~~~~~~---~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~-~  235 (282)
T cd06636         160 VKLVDFGVSAQLDRT---VGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRA-L  235 (282)
T ss_pred             EEEeeCcchhhhhcc---ccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhh-h
Confidence            999999998765321   11233456889999999875     34678899999999999999999999964311000 0


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         ..        .........  ........+.+++.+||+.||.+||++.|++++
T Consensus       236 ---~~--------~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~  279 (282)
T cd06636         236 ---FL--------IPRNPPPKL--KSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKH  279 (282)
T ss_pred             ---hh--------HhhCCCCCC--cccccCHHHHHHHHHHhCCChhhCcCHHHHhcC
Confidence               00        000000111  011233567788889999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-35  Score=296.69  Aligned_cols=284  Identities=24%  Similarity=0.296  Sum_probs=220.0

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|..-++||+|+||.||-++.+ +|+.+|.|++.+++.+       ..+.......|-.++.+++.+.||.+--+|++.+
T Consensus       186 ~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiK-------kr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd  258 (591)
T KOG0986|consen  186 TFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIK-------KRKGETMALNEKQILEKVSSPFIVSLAYAFETKD  258 (591)
T ss_pred             ceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHH-------HhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCC
Confidence            4666789999999999998554 7999999988655433       2445566788999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++|+..|.||+|.=++... ...+++..+..++.+|+.||++||.   .+||+||+||+|||+|+.|+++|+|.|+|.
T Consensus       259 ~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~---~~iVYRDLKPeNILLDd~GhvRISDLGLAv  335 (591)
T KOG0986|consen  259 ALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHR---RRIVYRDLKPENILLDDHGHVRISDLGLAV  335 (591)
T ss_pred             ceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHh---cceeeccCChhheeeccCCCeEeeccceEE
Confidence            999999999999998877654 3579999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+..    ..+....+||.+|||||++.++.|+...|.||+||++|||+.|+.||.....    -..|........    
T Consensus       336 ei~~----g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~Ke----Kvk~eEvdrr~~----  403 (591)
T KOG0986|consen  336 EIPE----GKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKE----KVKREEVDRRTL----  403 (591)
T ss_pred             ecCC----CCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhh----hhhHHHHHHHHh----
Confidence            7743    2333445899999999999999999999999999999999999999975321    111111111111    


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH--hhhcCCCCCCCC-----CCCCCccccCCccc
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL--LAEADPCRFESC-----KFPNKSNKESSNAT  832 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~--L~~~~~~~~~~~-----~~~~~~~~~~~~~~  832 (840)
                       -.+.+++..+.++...+.+   ..+.+||.+|.     .+++|.+|  +.+++..+.+.-     =.|.+..-+.+++-
T Consensus       404 -~~~~ey~~kFS~eakslc~---~LL~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~rleagml~PPfiPdp~aVyakDv~  479 (591)
T KOG0986|consen  404 -EDPEEYSDKFSEEAKSLCE---GLLTKDPEKRLGCRGEGAQEVKEHPFFKDLNWRRLEAGMLEPPFIPDPGAVYAKDVL  479 (591)
T ss_pred             -cchhhcccccCHHHHHHHH---HHHccCHHHhccCCCcCcchhhhCcccccCCHhHHhccCCCCCCCCCccccchhhhh
Confidence             1122344555566666555   78899999997     56678776  456665555442     23566666666665


Q ss_pred             ccCC
Q 003199          833 KIKN  836 (840)
Q Consensus       833 ~~~~  836 (840)
                      +|+.
T Consensus       480 DIeq  483 (591)
T KOG0986|consen  480 DIEQ  483 (591)
T ss_pred             hhhh
Confidence            5543

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=8.3e-34  Score=300.07  Aligned_cols=250  Identities=27%  Similarity=0.371  Sum_probs=188.4

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHH-HhccCCCCcceeeeEEecC
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET-LGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~  604 (840)
                      +|+..+.||+|+||.||+|... +|+.||+|++......         .....+..|+.. ++...|||++++++++...
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---------~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~   72 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNS---------QEQKRLLMDLDISMRSVDCPYTVTFYGALFRE   72 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCc---------HHHHHHHHHHHHHHHHcCCCCeeeeeEEEecC
Confidence            5677889999999999999654 7999999988533211         112334455554 5667899999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCCEEEcCCCCCeeecc
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLS-PIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      ...++||||++ |+|.+++...   ...+++..+..++.|++.||+|||+   + +++||||||+||+++.++.+||+||
T Consensus        73 ~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~~i~h~dlkp~nil~~~~~~~kl~df  148 (283)
T cd06617          73 GDVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHS---KLSVIHRDVKPSNVLINRNGQVKLCDF  148 (283)
T ss_pred             CcEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEeec
Confidence            99999999996 6887776542   3468999999999999999999998   6 8999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCcccccc----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |+++....    ........|+..|+|||.+.+    ..++.++|+||||+++|||++|+.||...........   .. 
T Consensus       149 g~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~---~~-  220 (283)
T cd06617         149 GISGYLVD----SVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLK---QV-  220 (283)
T ss_pred             cccccccc----ccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHH---HH-
Confidence            99876532    112233568889999998754    4568899999999999999999999864211101000   00 


Q ss_pred             hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .       .........  ......+.+++.+|+..+|++||++.+++++
T Consensus       221 ~-------~~~~~~~~~--~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  261 (283)
T cd06617         221 V-------EEPSPQLPA--EKFSPEFQDFVNKCLKKNYKERPNYPELLQH  261 (283)
T ss_pred             H-------hcCCCCCCc--cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0       000011110  1123457788889999999999999999875

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9e-34  Score=298.76  Aligned_cols=248  Identities=26%  Similarity=0.366  Sum_probs=195.9

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC---CCCcceeeeEEec
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR---HKNIVKLYCYFSS  603 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~  603 (840)
                      |+..+.||+|+||.||+|.. .+++.||+|.+.....         ....+.+.+|+.++++++   |||++++++++.+
T Consensus         3 y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~---------~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~   73 (277)
T cd06917           3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTP---------DDDVSDIQREVALLSQLRQSQPPNITKYYGSYLK   73 (277)
T ss_pred             hhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCC---------chhHHHHHHHHHHHHHhccCCCCCeeeEeeeeee
Confidence            56678899999999999965 5789999998743221         122456778999999986   9999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++++|.+++...  .+++..+..++.|++.|+.|||+   .+++||||+|+||++++++.++++|||++
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~  148 (277)
T cd06917          74 GPRLWIIMEYAEGGSVRTLMKAG--PIAEKYISVIIREVLVALKYIHK---VGVIHRDIKAANILVTNTGNVKLCDFGVA  148 (277)
T ss_pred             CCEEEEEEecCCCCcHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHHEEEcCCCCEEEccCCce
Confidence            99999999999999999998764  68999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ......   ........|+..|+|||.+.++ .++.++||||||+++|+|++|+.||......     .+...       
T Consensus       149 ~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~-----~~~~~-------  213 (277)
T cd06917         149 ALLNQN---SSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF-----RAMML-------  213 (277)
T ss_pred             eecCCC---ccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh-----hhhhc-------
Confidence            776432   1223345688999999988654 4689999999999999999999999753211     00000       


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ......+.+...  ....++.+++.+|++.||++||++.|++++
T Consensus       214 ~~~~~~~~~~~~--~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         214 IPKSKPPRLEDN--GYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             cccCCCCCCCcc--cCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence            000001111111  134567788889999999999999999875

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-34  Score=303.80  Aligned_cols=264  Identities=28%  Similarity=0.341  Sum_probs=198.7

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|++|.||+|... +++.||||++.....        .....+.+.+|++++++++|+||+++++++...+
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~--------~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   73 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESED--------DEDVKKTALREVKVLRQLRHENIVNLKEAFRRKG   73 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcc--------cccchhHHHHHHHHHHhcCCCCeeehhheEEECC
Confidence            5777889999999999999665 688999998854321        1233467889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||++++.+....... ..+++..+..++.+++.|++|||+   .+++||||+|+||++++++.+||+|||.+..
T Consensus        74 ~~~iv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~  149 (288)
T cd07833          74 RLYLVFEYVERTLLELLEASP-GGLPPDAVRSYIWQLLQAIAYCHS---HNIIHRDIKPENILVSESGVLKLCDFGFARA  149 (288)
T ss_pred             EEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEEeeecccc
Confidence            999999999987776655543 368999999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh-------
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV-------  757 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-------  757 (840)
                      .....  ........++..|+|||++.+. .++.++||||||+++|||++|+.||......  ..........       
T Consensus       150 ~~~~~--~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~  225 (288)
T cd07833         150 LRARP--ASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDI--DQLYLIQKCLGPLPPSH  225 (288)
T ss_pred             cCCCc--cccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhCCCCHHH
Confidence            64321  1133345678899999999887 7899999999999999999999999753211  0000000000       


Q ss_pred             ------ccccchhhhccccc----CCCcH-HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 ------DTKEGIMEVLDKKL----SGSFR-DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ------~~~~~~~~~~~~~~----~~~~~-~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            ..........+...    ...+. ....++.+++.+||..+|++||++++++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  285 (288)
T cd07833         226 QELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQH  285 (288)
T ss_pred             hhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcC
Confidence                  00000000000000    00011 124667889999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.4e-33  Score=298.17  Aligned_cols=249  Identities=26%  Similarity=0.376  Sum_probs=196.9

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|...+.||+|++|.||+|.. .+++.||+|++....          ....+.+.+|+.+++.+.|+|++++++++...+
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~----------~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~   89 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK----------QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGD   89 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccc----------hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCC
Confidence            344567899999999999964 578999999873221          122456789999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|+||+++++|.+++...  .+++..+..++.|++.|++|||+   ++++||||+|+||+++.++.++++|||.+..
T Consensus        90 ~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~  164 (285)
T cd06648          90 ELWVVMEFLEGGALTDIVTHT--RMNEEQIATVCLAVLKALSFLHA---QGVIHRDIKSDSILLTSDGRVKLSDFGFCAQ  164 (285)
T ss_pred             eEEEEEeccCCCCHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChhhEEEcCCCcEEEcccccchh
Confidence            999999999999999998873  68999999999999999999999   9999999999999999999999999998875


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...   .........|++.|+|||.+.+..++.++||||||+++|||++|+.||.....     .........       
T Consensus       165 ~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~-----~~~~~~~~~-------  229 (285)
T cd06648         165 VSK---EVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP-----LQAMKRIRD-------  229 (285)
T ss_pred             hcc---CCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH-----HHHHHHHHh-------
Confidence            532   11122345688999999999888899999999999999999999999864211     111110000       


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....... ........+.+++.+|++.+|++||++.+++++
T Consensus       230 ~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  269 (285)
T cd06648         230 NLPPKLK-NLHKVSPRLRSFLDRMLVRDPAQRATAAELLNH  269 (285)
T ss_pred             cCCCCCc-ccccCCHHHHHHHHHHcccChhhCcCHHHHccC
Confidence            0000111 011123467788889999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.1e-33  Score=302.30  Aligned_cols=259  Identities=20%  Similarity=0.246  Sum_probs=196.8

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|+||.||++... +++.||+|.+....       .......+.+.+|+++++.++||||+++++.+....
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~-------~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   74 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQN-------LILRNQIQQVFVERDILTFAENPFVVSMFCSFETKR   74 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhh-------hhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCC
Confidence            4677889999999999999654 67899999874332       111233467889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++.... .+++..+..++.|++.|++|||+   .+++||||||+||+++.++.++++|||+++.
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~  150 (305)
T cd05609          75 HLCMVMEYVEGGDCATLLKNIG-ALPVDMARMYFAETVLALEYLHN---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKI  150 (305)
T ss_pred             EEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHEEECCCCCEEEeeCCCccc
Confidence            9999999999999999997654 68999999999999999999999   9999999999999999999999999999864


Q ss_pred             hhccCC------------CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          686 LQARGG------------KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       686 ~~~~~~------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      ......            .........++..|+|||++.+..++.++|+||||+++|||++|+.||.+...     ..+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~-----~~~~  225 (305)
T cd05609         151 GLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP-----EELF  225 (305)
T ss_pred             cCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHH
Confidence            211000            00011224578899999999888899999999999999999999999964311     0111


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      .......     .......   ......+.+++.+|++.||++||++.++.+.++.
T Consensus       226 ~~~~~~~-----~~~~~~~---~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         226 GQVISDD-----IEWPEGD---EALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             HHHHhcc-----cCCCCcc---ccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence            1000000     0000001   1233456788889999999999996555555544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-35  Score=335.27  Aligned_cols=254  Identities=28%  Similarity=0.382  Sum_probs=200.9

Q ss_pred             hcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++.....||.|.||.||-| ...+|+..|||-++.....        .+..+.+.+|+.++..++|||+|+.+|.-...+
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~--------~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRe 1307 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSD--------HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHRE 1307 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccchhhhhhhhcCccc--------cccCcchHHHHHHHHhccCccccccCceeecHH
Confidence            3445678999999999997 6678999999987554432        344567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..+|.||||++|+|.+.++.+. ..++.....+-.|++.|++|||+   +|||||||||.||+++.+|.+|.+|||.|..
T Consensus      1308 kv~IFMEyC~~GsLa~ll~~gr-i~dE~vt~vyt~qll~gla~LH~---~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~k 1383 (1509)
T KOG4645|consen 1308 KVYIFMEYCEGGSLASLLEHGR-IEDEMVTRVYTKQLLEGLAYLHE---HGIVHRDIKPANILLDFNGLIKYGDFGSAVK 1383 (1509)
T ss_pred             HHHHHHHHhccCcHHHHHHhcc-hhhhhHHHHHHHHHHHHHHHHHh---cCceecCCCccceeeecCCcEEeecccceeE
Confidence            9999999999999999998764 56777778889999999999999   9999999999999999999999999999988


Q ss_pred             hhccC-CCCcceecccccccccCccccccC---CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          686 LQARG-GKDSTTTVIAGTYGYLAPEYAYSS---KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       686 ~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +...- .-........||+.|||||++.+.   ....++||||+|||+.||+||+.||......      |..       
T Consensus      1384 i~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne------~aI------- 1450 (1509)
T KOG4645|consen 1384 IKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNE------WAI------- 1450 (1509)
T ss_pred             ecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccch------hHH-------
Confidence            75531 111223457899999999999764   3567899999999999999999999753211      111       


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       +.++.....++.......+-.+++.+|++.||++|.++.|++++
T Consensus      1451 -My~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~ 1494 (1509)
T KOG4645|consen 1451 -MYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEH 1494 (1509)
T ss_pred             -HhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHh
Confidence             11222222233232233344455669999999999999988765

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=8.8e-34  Score=300.62  Aligned_cols=253  Identities=28%  Similarity=0.320  Sum_probs=190.9

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecC
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSL  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~  604 (840)
                      +|...+.||+|+||.||++.. .+|+.||+|.+.....         ......+.+|+.++.++. |+||+++++++..+
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~---------~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~   75 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVD---------EKEQKRLLMDLDVVMRSSDCPYIVKFYGALFRE   75 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccC---------hHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecC
Confidence            445567899999999999855 4689999998853221         133456888999999996 99999999999998


Q ss_pred             ccceEEEeecCCCChHHH---hhc-CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          605 YCNLLVYEYMPNGNLWDA---LHK-GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~---l~~-~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      ...+++|||+. +++.+.   +.. ....+++..+..++.+++.||+|||+.  .+++||||||+||++++++.++|+||
T Consensus        76 ~~~~~~~e~~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~df  152 (288)
T cd06616          76 GDCWICMELMD-ISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDF  152 (288)
T ss_pred             CcEEEEEeccc-CCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeec
Confidence            89999999985 455443   222 224689999999999999999999972  48999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccC---CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS---KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      |+++.....    .......|+..|+|||++.+.   .++.++|||||||++|||++|+.||....    ....... ..
T Consensus       153 g~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~----~~~~~~~-~~  223 (288)
T cd06616         153 GISGQLVDS----IAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN----SVFDQLT-QV  223 (288)
T ss_pred             chhHHhccC----CccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc----hHHHHHh-hh
Confidence            999776431    122334688899999998766   68999999999999999999999996531    0000000 00


Q ss_pred             ccccchhhhcccccCC-CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 DTKEGIMEVLDKKLSG-SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...      ..+.+.. ........+.+++.+|++.+|++|||+.+++++
T Consensus       224 ~~~------~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         224 VKG------DPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             cCC------CCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            000      0011111 112244567788889999999999999999987

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.5e-33  Score=298.37  Aligned_cols=255  Identities=31%  Similarity=0.420  Sum_probs=202.6

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ..+.|+..+.||+|++|.||+|... +++.||+|++.....           ..+.+.+|+++++.++|+|++++++++.
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-----------~~~~~~~e~~~l~~l~~~~i~~~~~~~~   85 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-----------NKELIINEILIMKDCKHPNIVDYYDSYL   85 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-----------hHHHHHHHHHHHHHCCCCCeeEEEEEEE
Confidence            3455677788999999999999665 789999999843221           3466888999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      .....++|+||+++++|.+++......+++..+..++.+++.||+|||+   .+++|+||+|+||+++.++.++|+|||.
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~---~gi~H~dl~p~ni~i~~~~~~~l~d~~~  162 (286)
T cd06614          86 VGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHS---QNVIHRDIKSDNILLSKDGSVKLADFGF  162 (286)
T ss_pred             ECCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCChhhEEEcCCCCEEECccch
Confidence            9999999999999999999998765478999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +......   ........++..|+|||++.+..++.++||||||+++|+|++|+.||......    ........  .. 
T Consensus       163 ~~~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~----~~~~~~~~--~~-  232 (286)
T cd06614         163 AAQLTKE---KSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPL----RALFLITT--KG-  232 (286)
T ss_pred             hhhhccc---hhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHH----HHHHHHHh--cC-
Confidence            8765331   11223445788999999998888999999999999999999999998643111    00000000  00 


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .     ... .........+.+++.+|++.+|.+||++.+++++-.
T Consensus       233 ~-----~~~-~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~  272 (286)
T cd06614         233 I-----PPL-KNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPF  272 (286)
T ss_pred             C-----CCC-cchhhCCHHHHHHHHHHhccChhhCcCHHHHhhChH
Confidence            0     000 011113356777888999999999999999987643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=281.00  Aligned_cols=253  Identities=25%  Similarity=0.315  Sum_probs=201.9

Q ss_pred             HHHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ..++|...++||+|.||+|..++ ..+|+.+|+|++++...-.       ......-..|-++++..+||.+..+--.|+
T Consensus       166 Tm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviia-------kdEVAHTlTE~RVL~~~~HPFLt~LKYsFQ  238 (516)
T KOG0690|consen  166 TMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIA-------KDEVAHTLTENRVLQNCRHPFLTSLKYSFQ  238 (516)
T ss_pred             ccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheee-------hHHhhhhhhHHHHHHhccCcHHHHhhhhhc
Confidence            34667788899999999999984 5589999999986554221       122344567889999999999999988899


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ..+..++||||..||.|+-++.+.. .+++...+.+...|+.||.|||+   ++||.||+|.+|.|+|.+|++||+|||+
T Consensus       239 t~drlCFVMeyanGGeLf~HLsrer-~FsE~RtRFYGaEIvsAL~YLHs---~~ivYRDlKLENLlLDkDGHIKitDFGL  314 (516)
T KOG0690|consen  239 TQDRLCFVMEYANGGELFFHLSRER-VFSEDRTRFYGAEIVSALGYLHS---RNIVYRDLKLENLLLDKDGHIKITDFGL  314 (516)
T ss_pred             cCceEEEEEEEccCceEeeehhhhh-cccchhhhhhhHHHHHHhhhhhh---CCeeeeechhhhheeccCCceEeeeccc
Confidence            9999999999999999999888754 78999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ++.--   ........++|||.|.|||++....|+.+.|.|.+||++|||++|+.||.....  ..+..           
T Consensus       315 CKE~I---~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh--~kLFe-----------  378 (516)
T KOG0690|consen  315 CKEEI---KYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDH--EKLFE-----------  378 (516)
T ss_pred             chhcc---cccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccch--hHHHH-----------
Confidence            87532   234456789999999999999999999999999999999999999999975311  11110           


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      ..-..+-+.+....++...   |....+.+||.+|.     .++||.++
T Consensus       379 LIl~ed~kFPr~ls~eAkt---LLsGLL~kdP~kRLGgGpdDakEi~~h  424 (516)
T KOG0690|consen  379 LILMEDLKFPRTLSPEAKT---LLSGLLKKDPKKRLGGGPDDAKEIMRH  424 (516)
T ss_pred             HHHhhhccCCccCCHHHHH---HHHHHhhcChHhhcCCCchhHHHHHhh
Confidence            1112233344444444444   45588899999996     56666654

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=3.3e-33  Score=300.01  Aligned_cols=254  Identities=29%  Similarity=0.355  Sum_probs=197.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|+||.||+|.. .+|..||+|++.....       ........+..|+++++.++|+|++++++++.+.
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   97 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGK-------QSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLRE   97 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCC-------CchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC
Confidence            3466778899999999999965 4689999998743221       1123346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+. |++.+.+......++|.++..++.+++.|+.|||+   .+++||||+|+||+++.++.++|+|||++.
T Consensus        98 ~~~~lv~e~~~-g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~  173 (317)
T cd06635          98 HTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSAS  173 (317)
T ss_pred             CeEEEEEeCCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcccEEECCCCCEEEecCCCcc
Confidence            99999999996 58888776555578999999999999999999999   999999999999999999999999999986


Q ss_pred             hhhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ....       .....|++.|+|||++.   .+.++.++|||||||++|||++|+.||....    ...........   
T Consensus       174 ~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~----~~~~~~~~~~~---  239 (317)
T cd06635         174 IASP-------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN----AMSALYHIAQN---  239 (317)
T ss_pred             ccCC-------cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCcc----HHHHHHHHHhc---
Confidence            5422       22346888999999874   4568999999999999999999999986431    00000000000   


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                             .............+.+++.+|++.+|.+||++.+++++.....
T Consensus       240 -------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~  282 (317)
T cd06635         240 -------ESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLR  282 (317)
T ss_pred             -------cCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhc
Confidence                   0000011123345677888999999999999999999876543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=6.7e-34  Score=300.74  Aligned_cols=263  Identities=27%  Similarity=0.341  Sum_probs=194.7

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||.|++|.||+|.. .+|..||+|++......        ......+.+|+++++.++|+|++++++++.+...
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~   72 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETED--------EGVPSTAIREISLLKELNHPNIVRLLDVVHSENK   72 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeeccccc--------ccchhHHHHHHHHHHhcCCCCccCHhheeccCCe
Confidence            45678899999999999965 47999999988543211        1223457789999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      .++||||++ ++|.+++.... ..+++..+..++.|+++||+|||+   ++++||||+|+||+++.++.++|+|||.+..
T Consensus        73 ~~iv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~---~~~~H~dl~p~nil~~~~~~~~l~df~~~~~  148 (283)
T cd07835          73 LYLVFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHS---HRVLHRDLKPQNLLIDREGALKLADFGLARA  148 (283)
T ss_pred             EEEEEeccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCcEEEeecccccc
Confidence            999999994 68999887653 368999999999999999999999   8999999999999999999999999999875


Q ss_pred             hhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc---
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE---  761 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~---  761 (840)
                      ....   ........++..|+|||++.+. .++.++||||||+++|||++|+.||...... .......+.......   
T Consensus       149 ~~~~---~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~  224 (283)
T cd07835         149 FGVP---VRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEI-DQLFRIFRTLGTPDEDVW  224 (283)
T ss_pred             cCCC---ccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCChHHh
Confidence            5321   1122233568899999987654 5788999999999999999999999753211 000000000000000   


Q ss_pred             -------chhhhccc----ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 -------GIMEVLDK----KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 -------~~~~~~~~----~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                             ........    ............+.+++.+|++.||++||+++|++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  280 (283)
T cd07835         225 PGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQH  280 (283)
T ss_pred             hhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                   00000000    0001111223567789999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-33  Score=297.23  Aligned_cols=252  Identities=28%  Similarity=0.358  Sum_probs=195.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      ..+|+..+.||+|++|.||+|..+ +++.|++|++....           ...+.+.+|+.+++++ .|+||+++++++.
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-----------~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~   73 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE-----------DEEEEIKEEYNILRKYSNHPNIATFYGAFI   73 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc-----------hhHHHHHHHHHHHHHhcCCCChheEEEEEE
Confidence            467888999999999999999664 67899999874322           1245688999999999 6999999999996


Q ss_pred             cCc------cceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          603 SLY------CNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       603 ~~~------~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      ...      ..++||||+++++|.+++...   ...+++..+..++.|++.||+|||+   .+++|+||+|+||++++++
T Consensus        74 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~~l~p~ni~~~~~~  150 (275)
T cd06608          74 KKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHE---NKVIHRDIKGQNILLTKNA  150 (275)
T ss_pred             ecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEEccCC
Confidence            544      479999999999999988653   2468999999999999999999999   9999999999999999999


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCcccccc-----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                      .++|+|||.+......   ........|+..|+|||++..     ..++.++||||||+++|||++|+.||...... . 
T Consensus       151 ~~~l~d~~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~-  225 (275)
T cd06608         151 EVKLVDFGVSAQLDST---LGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPM-R-  225 (275)
T ss_pred             eEEECCCccceecccc---hhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchH-H-
Confidence            9999999998765321   122234568899999998753     34678999999999999999999999642110 0 


Q ss_pred             hhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        ...+....        ...... ........+.+++.+|+..||++|||+.+++++
T Consensus       226 --~~~~~~~~--------~~~~~~-~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~  272 (275)
T cd06608         226 --ALFKIPRN--------PPPTLK-SPENWSKKFNDFISECLIKNYEQRPFMEELLEH  272 (275)
T ss_pred             --HHHHhhcc--------CCCCCC-chhhcCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence              00100000        000010 111234567788889999999999999999874

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=1.3e-33  Score=307.88  Aligned_cols=262  Identities=24%  Similarity=0.308  Sum_probs=197.1

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+...|+..+.||+|+||.||+|.. .+|+.||||++.....        .......+.+|+.++++++|+||+++++++
T Consensus        13 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   84 (353)
T cd07850          13 TVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQ--------NVTHAKRAYRELVLMKLVNHKNIIGLLNVF   84 (353)
T ss_pred             hhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCcccc--------ChhHHHHHHHHHHHHHhcCCCCCcceeeee
Confidence            4567899999999999999999954 5799999998743221        122345567899999999999999999988


Q ss_pred             ecC------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          602 SSL------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       602 ~~~------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      ...      ...++||||+. ++|.+.+...   +++..+..++.|++.||+|||+   .+++||||||+||+++.++.+
T Consensus        85 ~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~---l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nil~~~~~~~  157 (353)
T cd07850          85 TPQKSLEEFQDVYLVMELMD-ANLCQVIQMD---LDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTL  157 (353)
T ss_pred             ccCCCccccCcEEEEEeccC-CCHHHHHhhc---CCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCE
Confidence            543      34689999995 5888887653   7899999999999999999999   899999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|||+++....    ........++..|+|||.+.+..++.++|||||||++|+|++|+.||.....    ...|...
T Consensus       158 kL~Dfg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~----~~~~~~~  229 (353)
T cd07850         158 KILDFGLARTAGT----SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDH----IDQWNKI  229 (353)
T ss_pred             EEccCccceeCCC----CCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCH----HHHHHHH
Confidence            9999999976532    1122344678899999999999999999999999999999999999975321    0111110


Q ss_pred             hhcc--------------------------ccchhhhcccccCCC-----cHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 003199          756 KVDT--------------------------KEGIMEVLDKKLSGS-----FRDEMIQVLRIAIRCTSKSPATRPTMNEVV  804 (840)
Q Consensus       756 ~~~~--------------------------~~~~~~~~~~~~~~~-----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl  804 (840)
                      ....                          .....+.......+.     .......+.+++.+|++.||++|||+.|++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL  309 (353)
T cd07850         230 IEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDAL  309 (353)
T ss_pred             HHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHh
Confidence            0000                          000000000000000     112244577899999999999999999999


Q ss_pred             HHh
Q 003199          805 QLL  807 (840)
Q Consensus       805 ~~L  807 (840)
                      ++=
T Consensus       310 ~~~  312 (353)
T cd07850         310 QHP  312 (353)
T ss_pred             cCh
Confidence            873

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=8.2e-34  Score=303.93  Aligned_cols=266  Identities=26%  Similarity=0.321  Sum_probs=195.4

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|.. .+|+.||+|++......        ......+.+|+.++++++|+|++++++++..
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   77 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNER--------DGIPISSLREITLLLNLRHPNIVELKEVVVG   77 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCC--------CCCcchhhHHHHHHHhCCCCCCcceEEEEec
Confidence            35688889999999999999965 46999999998543211        1112345679999999999999999999865


Q ss_pred             C--ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          604 L--YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       604 ~--~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .  +..++||||++ ++|.+++......+++.++..++.|++.|++|||+   .+++||||||+||+++.++.+||+|||
T Consensus        78 ~~~~~~~lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~kL~dfg  153 (309)
T cd07845          78 KHLDSIFLVMEYCE-QDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHE---NFIIHRDLKVSNLLLTDKGCLKIADFG  153 (309)
T ss_pred             CCCCeEEEEEecCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccc
Confidence            4  46799999996 58888887655578999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc-
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT-  759 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-  759 (840)
                      .+.......   .......+++.|+|||.+.+ ..++.++||||+|+++|||++|+.||.....  ............. 
T Consensus       154 ~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~--~~~~~~~~~~~~~~  228 (309)
T cd07845         154 LARTYGLPA---KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSE--IEQLDLIIQLLGTP  228 (309)
T ss_pred             eeeecCCcc---CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhcCCC
Confidence            997764321   12223345788999998865 4578999999999999999999999975321  1100000000000 


Q ss_pred             -cc-----------chhhhccccc---CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          760 -KE-----------GIMEVLDKKL---SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       760 -~~-----------~~~~~~~~~~---~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                       ..           ..........   ..........+.+++.+|++.||++|||+.+++.+-
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h~  291 (309)
T cd07845         229 NESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALESS  291 (309)
T ss_pred             ChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcCh
Confidence             00           0000000000   000111245567889999999999999999999763

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-33  Score=292.63  Aligned_cols=256  Identities=25%  Similarity=0.316  Sum_probs=195.8

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC-
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-  604 (840)
                      .|...+.||+|+||.||+|.. .+|..||+|.+......     ....+....+.+|++++++++|+||+++++++.+. 
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~-----~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~   77 (264)
T cd06653           3 NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDS-----QETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPE   77 (264)
T ss_pred             ceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCccc-----chhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCC
Confidence            577788999999999999954 56899999987432111     11233456789999999999999999999998664 


Q ss_pred             -ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 -YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 -~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                       ...++|+||+++++|.+++.... .+++..+..++.|++.|++|||+   .+++|+||||+||+++.++.++|+|||++
T Consensus        78 ~~~~~~v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~  153 (264)
T cd06653          78 EKKLSIFVEYMPGGSIKDQLKAYG-ALTENVTRRYTRQILQGVSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGAS  153 (264)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECccccc
Confidence             45789999999999999987654 57899999999999999999999   89999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +................++..|+|||.+.+..++.++|||||||++||+++|+.||.....    .....+...      
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~------  223 (264)
T cd06653         154 KRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEA----MAAIFKIAT------  223 (264)
T ss_pred             cccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCH----HHHHHHHHc------
Confidence            7653211111122345688999999999888899999999999999999999999975311    100000000      


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       ......++..   ....+.+++.+|++ +|..||++.+++.+
T Consensus       224 -~~~~~~~p~~---~~~~~~~~i~~~l~-~~~~r~~~~~~~~~  261 (264)
T cd06653         224 -QPTKPMLPDG---VSDACRDFLKQIFV-EEKRRPTAEFLLRH  261 (264)
T ss_pred             -CCCCCCCCcc---cCHHHHHHHHHHhc-CcccCccHHHHhcC
Confidence             0001112222   23456667779998 57999999998865

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=1.1e-33  Score=302.05  Aligned_cols=269  Identities=27%  Similarity=0.358  Sum_probs=197.7

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ...+.|+..+.||+|+||.||+|..+ +|+.||||++......        ......+.+|++++++++|||++++++++
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~--------~~~~~~~~~e~~~~~~l~h~~i~~~~~~~   75 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEK--------EGFPITAIREIKILRQLNHRNIVNLKEIV   75 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccc--------cCchHHHHHHHHHHHhCCCCCeeeeehee
Confidence            34577888999999999999999765 6899999998543211        11234567899999999999999999998


Q ss_pred             ecCc----------cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC
Q 003199          602 SSLY----------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV  671 (840)
Q Consensus       602 ~~~~----------~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~  671 (840)
                      .+..          ..++|+||+++ ++.+.+......+++..+..++.|++.||+|||+   .+|+||||||+||++++
T Consensus        76 ~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~  151 (302)
T cd07864          76 TDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHK---KNFLHRDIKCSNILLNN  151 (302)
T ss_pred             cCcchhhhccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECC
Confidence            7654          78999999975 7777777655578999999999999999999999   89999999999999999


Q ss_pred             CCCCeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchh
Q 003199          672 NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII  750 (840)
Q Consensus       672 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~  750 (840)
                      ++.+||+|||.+........  .......++..|+|||.+.+ ..++.++|||||||++|||++|+.||..... .....
T Consensus       152 ~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~-~~~~~  228 (302)
T cd07864         152 KGQIKLADFGLARLYNSEES--RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQE-LAQLE  228 (302)
T ss_pred             CCcEEeCcccccccccCCcc--cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCh-HHHHH
Confidence            99999999999976643211  22223356788999998764 4578999999999999999999999975321 11111


Q ss_pred             hhhhhhhcc-ccchhhhc--------c------cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          751 YWVSIKVDT-KEGIMEVL--------D------KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       751 ~~~~~~~~~-~~~~~~~~--------~------~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...+..... ......+.        +      ......+......+.+++.+|++.||++||++.+++.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  299 (302)
T cd07864         229 LISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNS  299 (302)
T ss_pred             HHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            110000000 00000000        0      00011111224567888999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=2.6e-33  Score=290.81  Aligned_cols=249  Identities=27%  Similarity=0.407  Sum_probs=200.6

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|++|.||+|... +++.|++|++.....          ...+.+.+|+++++.++|+|++++++++.....
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   71 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK----------EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDE   71 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch----------hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCe
Confidence            667789999999999999765 789999999854321          235678899999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++++||+++++|.+++......+++..+..++.+++.|++|||+   .+++||||+|+||++++++.++|+|||.+...
T Consensus        72 ~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~  148 (253)
T cd05122          72 LWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQL  148 (253)
T ss_pred             EEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc---CCEecCCCCHHHEEEccCCeEEEeeccccccc
Confidence            999999999999999998765578999999999999999999999   99999999999999999999999999998766


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      .....    .....++..|+|||.+.+..++.++||||||+++|+|++|+.||.....  .......  .        ..
T Consensus       149 ~~~~~----~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~~--~--------~~  212 (253)
T cd05122         149 SDTKA----RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPP--MKALFKI--A--------TN  212 (253)
T ss_pred             ccccc----ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCch--HHHHHHH--H--------hc
Confidence            43211    3445688999999999888899999999999999999999999875311  0000000  0        00


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....... .......+.+++.+|++.||++|||+.|++++
T Consensus       213 ~~~~~~~-~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~  251 (253)
T cd05122         213 GPPGLRN-PEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKH  251 (253)
T ss_pred             CCCCcCc-ccccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            0000100 01113567788889999999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=1.8e-33  Score=296.28  Aligned_cols=246  Identities=23%  Similarity=0.288  Sum_probs=185.8

Q ss_pred             eeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHH---HhccCCCCcceeeeEEecCccce
Q 003199          533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET---LGNIRHKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~---l~~l~h~niv~l~~~~~~~~~~~  608 (840)
                      .||+|+||.||+|.. .+|+.||+|.+.......       ......+.+|..+   +....|+|++.+++++...+..+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   73 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM-------KQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLC   73 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEcccccc-------chHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEE
Confidence            489999999999965 468999999885433211       1111223334333   33447999999999999988999


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhc
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA  688 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~  688 (840)
                      +||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||++++++.++++|||++.....
T Consensus        74 lv~e~~~~~~L~~~i~~~~-~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~  149 (279)
T cd05633          74 FILDLMNGGDLHYHLSQHG-VFSEKEMRFYATEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSK  149 (279)
T ss_pred             EEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcCCCCCCHHHEEECCCCCEEEccCCcceeccc
Confidence            9999999999999987654 68999999999999999999999   9999999999999999999999999999865432


Q ss_pred             cCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhc
Q 003199          689 RGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL  767 (840)
Q Consensus       689 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  767 (840)
                      .     ......|+..|+|||...+ ..++.++||||+||++|||++|+.||.........  ......        ...
T Consensus       150 ~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~--~~~~~~--------~~~  214 (279)
T cd05633         150 K-----KPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH--EIDRMT--------LTV  214 (279)
T ss_pred             c-----CccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHH--HHHHHh--------hcC
Confidence            1     1223468999999998864 56899999999999999999999999753221111  110000        001


Q ss_pred             ccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHh
Q 003199          768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQLL  807 (840)
Q Consensus       768 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~L  807 (840)
                      ...+.+.   ...++.+++.+|++.||++||     +++|++++-
T Consensus       215 ~~~~~~~---~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h~  256 (279)
T cd05633         215 NVELPDS---FSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHV  256 (279)
T ss_pred             CcCCccc---cCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhCc
Confidence            1112222   334566778899999999999     699998874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-33  Score=303.74  Aligned_cols=268  Identities=22%  Similarity=0.325  Sum_probs=194.8

Q ss_pred             cCccCeeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      |...+.||+|++|.||+|...   +++.||+|.+......       .......+.+|+.+++.++||||+++++++.+.
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~-------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   74 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQ-------YTGISQSACREIALLRELKHENVVSLVEVFLEH   74 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEecccccc-------ccCccHHHHHHHHHHHhcCCCCccceEEEEeCC
Confidence            667788999999999999664   4799999998653211       112234567899999999999999999999887


Q ss_pred             --ccceEEEeecCCCChHHHhhcC----CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC----CCC
Q 003199          605 --YCNLLVYEYMPNGNLWDALHKG----LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV----NYQ  674 (840)
Q Consensus       605 --~~~~lV~e~~~~gsL~~~l~~~----~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~----~~~  674 (840)
                        ...++||||+++ ++.+.+...    ...+++..++.++.|++.||+|||+   .+|+||||||+||+++.    ++.
T Consensus        75 ~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~h~dlkp~Nil~~~~~~~~~~  150 (316)
T cd07842          75 ADKSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS---NWVLHRDLKPANILVMGEGPERGV  150 (316)
T ss_pred             CCceEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEEcCCCCccce
Confidence              788999999964 676666432    1267889999999999999999999   99999999999999999    899


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcch----
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI----  749 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~----  749 (840)
                      +||+|||++.................+++.|+|||.+.+. .++.++||||||+++|||++|+.||..........    
T Consensus       151 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~  230 (316)
T cd07842         151 VKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQ  230 (316)
T ss_pred             EEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhH
Confidence            9999999998764432222233345678899999987664 57899999999999999999999997643322000    


Q ss_pred             ----hhhhh------------hhhccc-cch-hhhcccccC-CCcH-------HHHHHHHHHHHHccCCCCCCCCCHHHH
Q 003199          750 ----IYWVS------------IKVDTK-EGI-MEVLDKKLS-GSFR-------DEMIQVLRIAIRCTSKSPATRPTMNEV  803 (840)
Q Consensus       750 ----~~~~~------------~~~~~~-~~~-~~~~~~~~~-~~~~-------~~~~~l~~l~~~cl~~dP~~Rps~~ev  803 (840)
                          ...+.            ...... ... ......... ....       ....++.+++.+|++.||++|||+.|+
T Consensus       231 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~ei  310 (316)
T cd07842         231 RDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEA  310 (316)
T ss_pred             HHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHH
Confidence                00000            000000 000 000000001 0111       223467889999999999999999999


Q ss_pred             HHH
Q 003199          804 VQL  806 (840)
Q Consensus       804 l~~  806 (840)
                      +++
T Consensus       311 l~~  313 (316)
T cd07842         311 LEH  313 (316)
T ss_pred             hcC
Confidence            865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=2.4e-33  Score=292.92  Aligned_cols=246  Identities=27%  Similarity=0.363  Sum_probs=195.5

Q ss_pred             eeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       534 lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      ||.|++|.||+|... +++.||+|++......       .....+.+.+|+.+++.++||||+++++++.+....++|+|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   73 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIV-------ETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLME   73 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcch-------hhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEe
Confidence            689999999999665 5899999998543211       12335678999999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCC
Q 003199          613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK  692 (840)
Q Consensus       613 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  692 (840)
                      |+++++|.+++.+.. .+++..+..++.|++.||+|+|+   .+++|+||+|+||+++.++.++|+|||.++.....   
T Consensus        74 ~~~~~~L~~~l~~~~-~l~~~~~~~~~~~i~~~l~~lH~---~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~---  146 (262)
T cd05572          74 YCLGGELWTILRDRG-LFDEYTARFYIACVVLAFEYLHN---RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG---  146 (262)
T ss_pred             cCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcc---
Confidence            999999999998754 58999999999999999999999   99999999999999999999999999999876432   


Q ss_pred             CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccC
Q 003199          693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS  772 (840)
Q Consensus       693 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  772 (840)
                       .......++..|+|||.+.+..++.++|+||+|+++|||++|..||.....+   .............      ....+
T Consensus       147 -~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~------~~~~~  216 (262)
T cd05572         147 -QKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDED---PMEIYNDILKGNG------KLEFP  216 (262)
T ss_pred             -cccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCC---HHHHHHHHhccCC------CCCCC
Confidence             1223446888999999998888999999999999999999999999754221   1111111010000      00111


Q ss_pred             CCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 003199          773 GSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQL  806 (840)
Q Consensus       773 ~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~  806 (840)
                      ..   ....+.+++.+||+.+|++||+     ++|++++
T Consensus       217 ~~---~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~  252 (262)
T cd05572         217 NY---IDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKH  252 (262)
T ss_pred             cc---cCHHHHHHHHHHccCChhhCcCCcccCHHHHhcC
Confidence            11   1456788888999999999999     7887764

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.7e-34  Score=305.79  Aligned_cols=247  Identities=25%  Similarity=0.363  Sum_probs=192.4

Q ss_pred             cCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc--c
Q 003199          531 KNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC--N  607 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~  607 (840)
                      ..+||+|+|-+||+| +-.+|-.||--.++...      ........+.|..|+.+++.++||||++++.+|.+...  .
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d------~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~i  118 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRD------VTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTI  118 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHH------hhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCcee
Confidence            347999999999999 54568788754332211      11223446889999999999999999999999977655  6


Q ss_pred             eEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-CCCCeeecccchhhh
Q 003199          608 LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVADFGIAKVL  686 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~Dfg~a~~~  686 (840)
                      -+|+|.|..|+|+.|+.+.. ..+......|++||++||.|||+. .++|+|||||-+||+|+. .|.|||+|.|+|...
T Consensus       119 n~iTEL~TSGtLr~Y~kk~~-~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~  196 (632)
T KOG0584|consen  119 NFITELFTSGTLREYRKKHR-RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLL  196 (632)
T ss_pred             eeeeecccCCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHh
Confidence            78999999999999998875 678889999999999999999984 479999999999999975 689999999999987


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      ..    .. .....|||.|||||+.. ..|++.+||||||+-++||+|+..||..    +.+....+          +.+
T Consensus       197 r~----s~-aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsE----C~n~AQIY----------KKV  256 (632)
T KOG0584|consen  197 RK----SH-AKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSE----CTNPAQIY----------KKV  256 (632)
T ss_pred             hc----cc-cceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhh----hCCHHHHH----------HHH
Confidence            43    22 23378999999999765 7999999999999999999999999963    23222222          122


Q ss_pred             cccccCCCcH-HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          767 LDKKLSGSFR-DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       767 ~~~~~~~~~~-~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..+..+..+. -...++.++|.+|+.. ..+|||+.|++++
T Consensus       257 ~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  257 TSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             HcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhhC
Confidence            2222222111 1124566677799999 9999999999876

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=2e-33  Score=297.28  Aligned_cols=263  Identities=24%  Similarity=0.356  Sum_probs=195.3

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||.|++|.||+|... +|+.||||++......         ...+.+.+|++++++++|+|++++++++.+.+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---------~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   71 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEE---------GTPSTAIREISLMKELKHENIVRLHDVIHTEN   71 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccc---------cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCC
Confidence            3677889999999999999765 6899999988543211         12345678999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ..++||||++ ++|.+++....  ..+++..+..++.|++.||+|||+   .+++||||||+||++++++.++++|||++
T Consensus        72 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~h~dl~p~ni~~~~~~~~~l~d~g~~  147 (284)
T cd07836          72 KLMLVFEYMD-KDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHE---NRVLHRDLKPQNLLINKRGELKLADFGLA  147 (284)
T ss_pred             cEEEEEecCC-ccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCcEEEeecchh
Confidence            9999999997 48888886543  458999999999999999999999   89999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh-hhcccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI-KVDTKE  761 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~  761 (840)
                      ......   ........++..|+|||++.+. .++.++||||||+++|||++|+.||.+..... ........ ......
T Consensus       148 ~~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~  223 (284)
T cd07836         148 RAFGIP---VNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNED-QLLKIFRIMGTPTES  223 (284)
T ss_pred             hhhcCC---ccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChh
Confidence            765321   1122334578899999987654 56889999999999999999999997542211 00000000 000000


Q ss_pred             chhhh-----cccccCC--------CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEV-----LDKKLSG--------SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~-----~~~~~~~--------~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .....     .......        ........+.+++.+|++.||++||++.+++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~  281 (284)
T cd07836         224 TWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQH  281 (284)
T ss_pred             hHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            00000     0000000        011223567788899999999999999999864

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-34  Score=277.74  Aligned_cols=254  Identities=24%  Similarity=0.362  Sum_probs=198.2

Q ss_pred             CeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+|+.|--+ ...+|.++|||++-+..          ......+.+|++++.+++ |+||+++++||+++...||
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~----------gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYL  153 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQP----------GHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYL  153 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCC----------chHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEE
Confidence            47999999999986 67789999999984432          233567889999999994 9999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC---Ceeecccchhhh
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ---PKVADFGIAKVL  686 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~Dfg~a~~~  686 (840)
                      |||-|.||.|..++++.. .+++.++.++..+||.||.+||.   +||.|||+||+|||..+...   +||+||.++.-.
T Consensus       154 VfEKm~GGplLshI~~~~-~F~E~EAs~vvkdia~aLdFlH~---kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~  229 (463)
T KOG0607|consen  154 VFEKMRGGPLLSHIQKRK-HFNEREASRVVKDIASALDFLHT---KGIAHRDLKPENILCESPNKVSPVKICDFDLGSGI  229 (463)
T ss_pred             EEecccCchHHHHHHHhh-hccHHHHHHHHHHHHHHHHHHhh---cCcccccCCccceeecCCCCcCceeeecccccccc
Confidence            999999999999999875 79999999999999999999999   99999999999999976554   799999987654


Q ss_pred             hccCCCC----cceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          687 QARGGKD----STTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       687 ~~~~~~~----~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      ...+.-.    ......+|+..|||||+..     ...|+.+.|.||+|||+|-|++|.+||.+.-+.   ...|.+.+.
T Consensus       230 k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~---dCGWdrGe~  306 (463)
T KOG0607|consen  230 KLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGA---DCGWDRGEV  306 (463)
T ss_pred             ccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCC---cCCccCCCc
Confidence            3322111    2224567899999999752     235889999999999999999999999875332   222322211


Q ss_pred             c----------cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 D----------TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ~----------~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .          ..++..++-+    .++.....+..+++...+..|+..|.++.+++.+
T Consensus       307 Cr~CQ~~LFesIQEGkYeFPd----kdWahIS~eakdlisnLlvrda~~rlsa~~vlnh  361 (463)
T KOG0607|consen  307 CRVCQNKLFESIQEGKYEFPD----KDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNH  361 (463)
T ss_pred             cHHHHHHHHHHHhccCCcCCh----hhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCC
Confidence            1          1111111111    2334455566677778888999999999999885

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=6.8e-33  Score=300.52  Aligned_cols=276  Identities=27%  Similarity=0.357  Sum_probs=200.2

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCY  600 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~  600 (840)
                      .+.++|+..+.||+|+||.||+|... +|+.||||++......        ......+.+|+.+++++ +|+||++++++
T Consensus         4 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~--------~~~~~~~~~E~~~l~~l~~h~ni~~~~~~   75 (337)
T cd07852           4 HILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRN--------ATDAQRTFREIMFLQELGDHPNIVKLLNV   75 (337)
T ss_pred             hhhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCc--------chhhhhhhHHHHHHHHhcCCCCccceeee
Confidence            45677888899999999999999654 6899999988432111        12234567899999999 99999999999


Q ss_pred             EecC--ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          601 FSSL--YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       601 ~~~~--~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      +...  ...++||||++ ++|.+++...  .++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+
T Consensus        76 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~---~~i~H~dl~p~nill~~~~~~kl~  149 (337)
T cd07852          76 IKAENDKDIYLVFEYME-TDLHAVIRAN--ILEDVHKRYIMYQLLKALKYIHS---GNVIHRDLKPSNILLNSDCRVKLA  149 (337)
T ss_pred             eccCCCceEEEEecccc-cCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEe
Confidence            8653  35799999996 5999988765  68899999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCC--CcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc--h----
Q 003199          679 DFGIAKVLQARGGK--DSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN--I----  749 (840)
Q Consensus       679 Dfg~a~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~--~----  749 (840)
                      |||++.........  ........|+..|+|||.+.+ ..++.++||||||+++|||++|+.||.........  .    
T Consensus       150 d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~  229 (337)
T cd07852         150 DFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVI  229 (337)
T ss_pred             eccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Confidence            99999876432211  112234568899999998754 45789999999999999999999999653211000  0    


Q ss_pred             -----hhhhhhhhccccchhhhcccc----cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcCC
Q 003199          750 -----IYWVSIKVDTKEGIMEVLDKK----LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEADP  812 (840)
Q Consensus       750 -----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~~  812 (840)
                           ..+..................    ...........+.+++.+|++.||++|||+.+++++  +.....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~~  303 (337)
T cd07852         230 GPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFHN  303 (337)
T ss_pred             CCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhcc
Confidence                 000000000000000000000    000111134567889999999999999999999987  444433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=2.5e-33  Score=300.70  Aligned_cols=272  Identities=21%  Similarity=0.309  Sum_probs=196.2

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      .+..+.|+..+.||+|+||.||+|... +++.||||.+......        ......+.+|++++++++||||++++++
T Consensus         8 ~~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~iv~~~~~   79 (310)
T cd07865           8 CDEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEK--------EGFPITALREIKILQLLKHENVVNLIEI   79 (310)
T ss_pred             cchhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCc--------CCchhHHHHHHHHHHhCCCCCccceEEE
Confidence            345567889999999999999999654 6899999988543211        1122345679999999999999999999


Q ss_pred             EecCcc--------ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          601 FSSLYC--------NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       601 ~~~~~~--------~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      +.....        .++||||+. +++.+.+......+++.++..++.|++.||+|||+   ++++|+||||+||+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~  155 (310)
T cd07865          80 CRTKATPYNRYKGSFYLVFEFCE-HDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHR---NKILHRDMKAANILITKD  155 (310)
T ss_pred             EecccccccCCCceEEEEEcCCC-cCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEECCC
Confidence            866543        499999996 58888887665578999999999999999999999   899999999999999999


Q ss_pred             CCCeeecccchhhhhccCCC-CcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchh
Q 003199          673 YQPKVADFGIAKVLQARGGK-DSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII  750 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~  750 (840)
                      +.+||+|||++......... ........++..|+|||.+.+. .++.++||||||+++|||++|+.||....... ...
T Consensus       156 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~-~~~  234 (310)
T cd07865         156 GILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQH-QLT  234 (310)
T ss_pred             CcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHH-HHH
Confidence            99999999999876432211 1122344578899999987654 46889999999999999999999987532110 000


Q ss_pred             hhhhhhhccccch------hhhcc-cccCCC----cHH------HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          751 YWVSIKVDTKEGI------MEVLD-KKLSGS----FRD------EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       751 ~~~~~~~~~~~~~------~~~~~-~~~~~~----~~~------~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .............      ....+ ......    ...      ....+.+++.+|+..||++|||++|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h  307 (310)
T cd07865         235 LISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNH  307 (310)
T ss_pred             HHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcC
Confidence            0000000000000      00000 000000    000      12356689999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=1e-33  Score=301.30  Aligned_cols=264  Identities=22%  Similarity=0.268  Sum_probs=191.8

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecC
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSL  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~  604 (840)
                      +|+..+.||+|+||.||+|... +|+.||||.+......        ......+.+|+.+++.+. |+||+++++++...
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~--------~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~   73 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDE--------EGIPPTALREISLLQMLSESIYIVRLLDVEHVE   73 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccc--------cCCchHHHHHHHHHHHccCCCCccceeeeEeec
Confidence            5777889999999999999654 7899999987443211        112356778999999995 69999999998776


Q ss_pred             cc-----ceEEEeecCCCChHHHhhcCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-CCC
Q 003199          605 YC-----NLLVYEYMPNGNLWDALHKGL----VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQ  674 (840)
Q Consensus       605 ~~-----~~lV~e~~~~gsL~~~l~~~~----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~  674 (840)
                      +.     .++||||+++ ++.+++....    ..+++..+..++.||+.||+|||+   ++++||||||+||+++. ++.
T Consensus        74 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~~~nil~~~~~~~  149 (295)
T cd07837          74 EKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHK---HGVMHRDLKPQNLLVDKQKGL  149 (295)
T ss_pred             CCCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEecCCCe
Confidence            65     7999999975 8888876532    357999999999999999999999   99999999999999998 889


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      +||+|||.++.+...   ........+++.|+|||++.+ ..++.++||||||+++|||++|..||....... ......
T Consensus       150 ~kl~dfg~~~~~~~~---~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~  225 (295)
T cd07837         150 LKIADLGLGRAFSIP---VKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQ-QLLHIF  225 (295)
T ss_pred             EEEeecccceecCCC---ccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHH
Confidence            999999998765321   112223356888999998765 457899999999999999999999997532110 000000


Q ss_pred             hhh-hccccchh---hh---------cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          754 SIK-VDTKEGIM---EV---------LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       754 ~~~-~~~~~~~~---~~---------~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ... ........   ..         ...............+.+++.+|+..||.+||++.|++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~  291 (295)
T cd07837         226 KLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTH  291 (295)
T ss_pred             HHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            000 00000000   00         0000000011234567788999999999999999999865

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-33  Score=298.94  Aligned_cols=263  Identities=27%  Similarity=0.352  Sum_probs=197.0

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC--
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL--  604 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--  604 (840)
                      |+..+.||+|++|.||+|... +|+.||+|++.....        .......+.+|++++++++|+|++++++++...  
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~--------~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   72 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENE--------KEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGK   72 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccc--------cccchHHHHHHHHHHHhccCCCeeeheeeEecCCC
Confidence            456788999999999999665 589999999854421        122245678899999999999999999999887  


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|+||++ ++|.+++......+++..+..++.|+++|++|||+   .+++|+||+|+||++++++.++|+|||.+.
T Consensus        73 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~---~~~~h~dl~p~nil~~~~~~~~l~d~g~~~  148 (287)
T cd07840          73 GSIYMVFEYMD-HDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADFGLAR  148 (287)
T ss_pred             CcEEEEecccc-ccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEEcCCCCEEEcccccee
Confidence            78999999997 58988887764578999999999999999999999   899999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc--ccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD--TKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~  761 (840)
                      ......  ........++..|+|||.+.+ ..++.++||||||+++|||++|+.||.......  ..........  ...
T Consensus       149 ~~~~~~--~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~--~~~~~~~~~~~~~~~  224 (287)
T cd07840         149 PYTKRN--SADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELE--QLEKIFELCGSPTDE  224 (287)
T ss_pred             eccCCC--cccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHHHHhCCCchh
Confidence            764421  112233456788999997765 457899999999999999999999997532110  0000000000  000


Q ss_pred             chhhh--------------cccccCCCcHH-HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEV--------------LDKKLSGSFRD-EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~--------------~~~~~~~~~~~-~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .....              ....+...+.. ....+.+++.+|++.+|++||++.+++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  284 (287)
T cd07840         225 NWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQH  284 (287)
T ss_pred             hccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            00000              00000011111 14578899999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=5.3e-33  Score=294.60  Aligned_cols=262  Identities=25%  Similarity=0.275  Sum_probs=193.1

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc---CCCCcceeeeEEec
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI---RHKNIVKLYCYFSS  603 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~  603 (840)
                      |+..+.||+|+||.||+|..+ +++.||+|++......        ......+.+|+.+++++   .|+|++++++++..
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~--------~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~   72 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSE--------EGIPLSTLREIALLKQLESFEHPNIVRLLDVCHG   72 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEecccccc--------chhhhhHHHHHHHHHHhhccCCCCcceEEEEEee
Confidence            456788999999999999776 5899999998543321        11123455677766655   59999999999988


Q ss_pred             Ccc-----ceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 LYC-----NLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 ~~~-----~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      .+.     .+++|||+. ++|.+++.... ..+++..+..++.|++.||+|||+   .+++|+||+|+||+++.++.+||
T Consensus        73 ~~~~~~~~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~---~~i~h~~l~~~nili~~~~~~~l  148 (287)
T cd07838          73 PRTDRELKLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHS---HRIVHRDLKPQNILVTSDGQVKI  148 (287)
T ss_pred             ccCCCCceeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhEEEccCCCEEE
Confidence            776     899999996 58988887643 368999999999999999999999   89999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +|||.+......    .......++..|+|||++.+..++.++|||||||++|||++|+.||.+.... .....+.....
T Consensus       149 ~dfg~~~~~~~~----~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~  223 (287)
T cd07838         149 ADFGLARIYSFE----MALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEA-DQLDKIFDVIG  223 (287)
T ss_pred             eccCcceeccCC----cccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChH-HHHHHHHHHcC
Confidence            999998765321    1222335788999999999888999999999999999999999998753211 11111110000


Q ss_pred             c---cccc-----hhhhcccccCC----CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 D---TKEG-----IMEVLDKKLSG----SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ~---~~~~-----~~~~~~~~~~~----~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .   ....     ...........    ...+....+.+++.+||+.||++||++.+++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~  284 (287)
T cd07838         224 LPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQH  284 (287)
T ss_pred             CCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcC
Confidence            0   0000     00000111111    112334667789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=3.4e-33  Score=294.20  Aligned_cols=247  Identities=26%  Similarity=0.310  Sum_probs=191.9

Q ss_pred             eeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       534 lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      ||+|+||+||+|.. .+|+.||+|.+......       .......+.+|+++++.++|||++++++++...+..++|||
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~-------~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   73 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLK-------KRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMT   73 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhh-------hhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEe
Confidence            68999999999854 47899999988543211       12234556789999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCC
Q 003199          613 YMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG  691 (840)
Q Consensus       613 ~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~  691 (840)
                      |+++++|.+++.... ..+++..+..++.|++.|+.|||+   .+++||||+|+||+++.++.++|+|||.+.....   
T Consensus        74 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~---  147 (277)
T cd05577          74 LMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLAVELKG---  147 (277)
T ss_pred             cCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEccCcchhhhcc---
Confidence            999999999987653 368999999999999999999999   9999999999999999999999999999876532   


Q ss_pred             CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccccc
Q 003199          692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKL  771 (840)
Q Consensus       692 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  771 (840)
                       ........++..|+|||++.+..++.++||||+|+++|+|++|+.||..........    ........     .....
T Consensus       148 -~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~----~~~~~~~~-----~~~~~  217 (277)
T cd05577         148 -GKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKE----ELKRRTLE-----MAVEY  217 (277)
T ss_pred             -CCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHH----HHHhcccc-----ccccC
Confidence             222234467889999999988889999999999999999999999996532111000    00000000     01111


Q ss_pred             CCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          772 SGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       772 ~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      ...   ....+.+++.+|++.||++||     ++.+++.+
T Consensus       218 ~~~---~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h  254 (277)
T cd05577         218 PDK---FSPEAKDLCEALLQKDPEKRLGCRGGSADEVREH  254 (277)
T ss_pred             Ccc---CCHHHHHHHHHHccCChhHccCCCcccHHHHHhC
Confidence            122   244566788899999999999     77777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=4.3e-33  Score=291.40  Aligned_cols=253  Identities=30%  Similarity=0.433  Sum_probs=202.6

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|++|.||+|... +++.||||++.....         ....+.+.+|+.++.+++|+|++++++++....
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~---------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGD---------EEFRKQLLRELKTLRSCESPYVVKCYGAFYKEG   72 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcc---------hHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCC
Confidence            4677789999999999999665 599999998844321         133567899999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++... ..+++..+..++.|+++|++|||+.  .+++||||+|+||+++.++.++|+|||.+..
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lh~~--~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~  149 (264)
T cd06623          73 EISIVLEYMDGGSLADLLKKV-GKIPEPVLAYIARQILKGLDYLHTK--RHIIHRDIKPSNLLINSKGEVKIADFGISKV  149 (264)
T ss_pred             eEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhcc--CCCccCCCCHHHEEECCCCCEEEccCcccee
Confidence            999999999999999999875 3689999999999999999999974  6899999999999999999999999999876


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ....   ........++..|+|||...+..++.++||||||+++|||++|+.||......  .   +....       ..
T Consensus       150 ~~~~---~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~--~---~~~~~-------~~  214 (264)
T cd06623         150 LENT---LDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQP--S---FFELM-------QA  214 (264)
T ss_pred             cccC---CCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccccc--C---HHHHH-------HH
Confidence            6432   11222456788999999998888999999999999999999999999754220  1   11100       01


Q ss_pred             hcccccCCCcHH-HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          766 VLDKKLSGSFRD-EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~-~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ............ ....+.+++.+|+..+|++||++.+++++
T Consensus       215 ~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         215 ICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             HhcCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            111111111112 34567788889999999999999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=4.7e-33  Score=289.89  Aligned_cols=251  Identities=27%  Similarity=0.374  Sum_probs=201.0

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|++|.||++... +++.||+|++......        ....+.+.+|+++++.++|+|++++++.+....
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~   72 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMS--------EKEREDALNEVKILKKLNHPNIIKYYESFEEKG   72 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCC--------hHHHHHHHHHHHHHHhcCCCChhheEEEEecCC
Confidence            3667788999999999999654 6899999998443211        234566889999999999999999999999989


Q ss_pred             cceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          606 CNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ..++|+||+++++|.+++...   ...+++..+..++.+++.|+.|||+   .+++|+||+|+||++++++.++|+|||.
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~---~~~~H~dl~~~nil~~~~~~~~l~d~~~  149 (258)
T cd08215          73 KLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS---RKILHRDIKPQNIFLTSNGLVKLGDFGI  149 (258)
T ss_pred             EEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHHeEEcCCCcEEECCccc
Confidence            999999999999999999775   2578999999999999999999999   8999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +.......   .......|++.|+|||...+..++.++||||+|+++|+|++|+.||....     .......       
T Consensus       150 ~~~~~~~~---~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~-----~~~~~~~-------  214 (258)
T cd08215         150 SKVLSSTV---DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN-----LLELALK-------  214 (258)
T ss_pred             eeecccCc---ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc-----HHHHHHH-------
Confidence            97654321   22334568899999999988889999999999999999999999986431     1111100       


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         .......+........+.+++.+|+..+|++||++.+++++
T Consensus       215 ---~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  255 (258)
T cd08215         215 ---ILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQS  255 (258)
T ss_pred             ---HhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence               01111111111233556778889999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=7e-33  Score=293.97  Aligned_cols=268  Identities=20%  Similarity=0.209  Sum_probs=184.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhh--HHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQ--LQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|...+.||+|+||+||+|...+    +..+|+|+....... ...+...  .........+...+..+.|++++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   90 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENET-IVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG   90 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCc-hhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence            467888999999999999997654    345666653222111 0000000  001122334455667778999999998


Q ss_pred             EEecCc----cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          600 YFSSLY----CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       600 ~~~~~~----~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      ++....    ..++++|++. .++.+.+.... ..++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~---~~iiHrDiKp~Nill~~~~~~  165 (294)
T PHA02882         91 CGSFKRCRMYYRFILLEKLV-ENTKEIFKRIK-CKNKKLIKNIMKDMLTTLEYIHE---HGISHGDIKPENIMVDGNNRG  165 (294)
T ss_pred             eeeEecCCceEEEEEEehhc-cCHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCcE
Confidence            775543    3367788763 46666665432 46788899999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCC----CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhh
Q 003199          676 KVADFGIAKVLQARGGK----DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~  751 (840)
                      +|+|||+|+.+...+..    ........||+.|+|||+..+..++.++|||||||++|||++|+.||....... ....
T Consensus       166 ~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~-~~~~  244 (294)
T PHA02882        166 YIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNG-NLIH  244 (294)
T ss_pred             EEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccch-HHHH
Confidence            99999999876432111    112233569999999999999999999999999999999999999997642211 1111


Q ss_pred             hhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ....  +   ....+...+.  ........+.+++..|++.+|++||+++++++.+
T Consensus       245 ~~~~--~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        245 AAKC--D---FIKRLHEGKI--KIKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             HhHH--H---HHHHhhhhhh--ccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            0000  0   0011111111  0112235577788899999999999999999876

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=1.5e-33  Score=302.57  Aligned_cols=269  Identities=25%  Similarity=0.316  Sum_probs=194.1

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|... +++.||||++.......        .....+.+|++++++++|+||+++++++.+
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   78 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKD--------GFPITALREIKILKKLKHPNVVPLIDMAVE   78 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCC--------CcchhHHHHHHHHHhcCCCCccchhhheec
Confidence            467888999999999999999654 68999999885433211        112345689999999999999999988754


Q ss_pred             Cc--------cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          604 LY--------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       604 ~~--------~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      ..        ..++|+||+. +++...+......+++..+..++.|+++||+|||+   .+++||||||+||++++++.+
T Consensus        79 ~~~~~~~~~~~~~lv~~~~~-~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~---~~i~H~dl~p~nil~~~~~~~  154 (311)
T cd07866          79 RPDKSKRKRGSVYMVTPYMD-HDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHE---NHILHRDIKAANILIDNQGIL  154 (311)
T ss_pred             ccccccccCceEEEEEecCC-cCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCE
Confidence            33        4589999996 47777776655579999999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCC--------CcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCC
Q 003199          676 KVADFGIAKVLQARGGK--------DSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDN  746 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~--------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~  746 (840)
                      +|+|||+++........        ........+++.|+|||.+.+. .++.++||||||+++|||++|++||.+.....
T Consensus       155 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~  234 (311)
T cd07866         155 KIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDID  234 (311)
T ss_pred             EECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            99999999765432111        1122334678889999987654 57899999999999999999999997532110


Q ss_pred             cchhhhhhh-hhccc------cchhh----hcccccCC----CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          747 KNIIYWVSI-KVDTK------EGIME----VLDKKLSG----SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       747 ~~~~~~~~~-~~~~~------~~~~~----~~~~~~~~----~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       ........ .....      .....    ........    .+......+.+++.+|++.||++|||+.|++.+
T Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~  308 (311)
T cd07866         235 -QLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEH  308 (311)
T ss_pred             -HHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcC
Confidence             00000000 00000      00000    00001111    111223567889999999999999999999864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=4.3e-33  Score=289.91  Aligned_cols=248  Identities=27%  Similarity=0.351  Sum_probs=199.8

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|++|.||++.. .+++.+|+|.+......        ......+.+|+++++.++|+||+++++++.+...
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   73 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMS--------QKEREDAVNEIRILASVNHPNIISYKEAFLDGNK   73 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhcc--------HHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCE
Confidence            66778999999999999854 47899999998433211        1234567789999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          607 NLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .++|+||+++++|.+++...   ...+++..+..++.|++.|++|||+   .+++|+||+|+||++++++.+|++|||++
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~---~~i~h~~l~~~ni~~~~~~~~kl~d~g~~  150 (256)
T cd08530          74 LCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGIS  150 (256)
T ss_pred             EEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEEecCCcEEEeeccch
Confidence            99999999999999998762   2468999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ......     ......++..|+|||...+..++.++|+||+|+++|||++|+.||.....  .....            
T Consensus       151 ~~~~~~-----~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~--~~~~~------------  211 (256)
T cd08530         151 KVLKKN-----MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSM--QDLRY------------  211 (256)
T ss_pred             hhhccC-----CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHH------------
Confidence            876432     22234578899999999988899999999999999999999999965311  00000            


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       ................++.+++.+|++.+|++||++.+++++
T Consensus       212 -~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         212 -KVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             -HHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence             001111112222344667889999999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=299.09  Aligned_cols=251  Identities=25%  Similarity=0.315  Sum_probs=203.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ..|...+.||+|.|++|..|.. .+|..||||.+.+....        ......+.+|+++|..+.|||||+++.+....
T Consensus        56 g~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln--------~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~  127 (596)
T KOG0586|consen   56 GLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLN--------PSKRQKLGREVDIMKSLNHPNIVKLFSVIETE  127 (596)
T ss_pred             cceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccC--------hHHHHHHHHHHHHHHhcCCcceeeeeeeeeec
Confidence            3566778899999999999954 47999999988544322        22234488999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...|+||||+.+|.+++++.+... ..+..+..++.|+++|++|||+   +.|||||||++|||++.++.+||+|||++.
T Consensus       128 ~~lylV~eya~~ge~~~yl~~~gr-~~e~~ar~~F~q~vsaveYcH~---k~ivHrdLk~eNilL~~~mnikIaDfgfS~  203 (596)
T KOG0586|consen  128 ATLYLVMEYASGGELFDYLVKHGR-MKEKEARAKFRQIVSAVEYCHS---KNIVHRDLKAENILLDENMNIKIADFGFST  203 (596)
T ss_pred             ceeEEEEEeccCchhHHHHHhccc-chhhhhhhhhHHHHHHHHHHhh---cceeccccchhhcccccccceeeeccccce
Confidence            999999999999999999998874 4448899999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .+.    ........+|++.|.|||+..+..| .+.+|+||+|+++|-|+.|..||++..-.               +--
T Consensus       204 ~~~----~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk---------------~Lr  264 (596)
T KOG0586|consen  204 FFD----YGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLK---------------ELR  264 (596)
T ss_pred             eec----ccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccc---------------ccc
Confidence            874    3445567899999999999988776 68999999999999999999999863100               000


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ..++..+++ -......++-+++.+++-.+|.+|++++++.++-+
T Consensus       265 ~rvl~gk~r-Ip~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~W  308 (596)
T KOG0586|consen  265 PRVLRGKYR-IPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDRW  308 (596)
T ss_pred             chheeeeec-ccceeechhHHHHHHhhccCccccCCHHHhhhhcc
Confidence            111111111 11122345556777999999999999999998754

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-33  Score=321.83  Aligned_cols=256  Identities=26%  Similarity=0.364  Sum_probs=202.1

Q ss_pred             CccCeeeccCCcEEEEEEeC----C----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeee
Q 003199          529 TEKNKVGQGGSGTVYKIDLN----S----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYC  599 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~----~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~  599 (840)
                      ...+.+|+|+||.||+|...    .    ...||||+++....         ....+.+..|+++|+.+ .|+||+.++|
T Consensus       299 ~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~---------~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  299 KLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENAS---------SSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             cccceeecccccceEeEEEeecccccccceEEEEEEecccccC---------cHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            34458999999999998543    1    45799999854432         23467899999999999 5999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKS  664 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~  664 (840)
                      +|......++|+||++.|+|.++++...               ..+...+.+.++.|||.|++||++   .++|||||.+
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~---~~~vHRDLAa  446 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLAS---VPCVHRDLAA  446 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhh---CCccchhhhh
Confidence            9999999999999999999999998765               348889999999999999999999   9999999999


Q ss_pred             CCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCC
Q 003199          665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF  743 (840)
Q Consensus       665 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~  743 (840)
                      +|||++++..+||+|||+|+.....+..........-...|||||.+....|+.++|||||||++|||+| |..||.+..
T Consensus       447 RNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~  526 (609)
T KOG0200|consen  447 RNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP  526 (609)
T ss_pred             hhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC
Confidence            9999999999999999999865432211111111113456999999999999999999999999999999 999997521


Q ss_pred             CCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                       ....+.             ..+.+............++.+++..||+.+|++||++.++++.++..
T Consensus       527 -~~~~l~-------------~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~  579 (609)
T KOG0200|consen  527 -PTEELL-------------EFLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKH  579 (609)
T ss_pred             -cHHHHH-------------HHHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence             011111             11111222223333456777899999999999999999999999874

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=1.2e-33  Score=305.75  Aligned_cols=269  Identities=22%  Similarity=0.304  Sum_probs=198.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..+|+..+.||+|++|.||+|.. .+|+.||+|++......        ....+.+.+|+.++++++||||+++++++..
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~   75 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDV--------PTLAKRTLRELKILRHFKHDNIIAIRDILRP   75 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEecccccc--------ccchHHHHHHHHHHHhcCCCCccCHHHhccc
Confidence            35788888999999999999954 47999999998543211        1224567789999999999999999988753


Q ss_pred             ----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          604 ----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       604 ----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                          ....++||||+. |+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||++++++.+||+|
T Consensus        76 ~~~~~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~d  150 (334)
T cd07855          76 PGADFKDVYVVMDLME-SDLHHIIHSDQ-PLTEEHIRYFLYQLLRGLKYIHS---ANVIHRDLKPSNLLVNEDCELRIGD  150 (334)
T ss_pred             cCCCCceEEEEEehhh-hhHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEecc
Confidence                346789999995 68999887654 58999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCC-CcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          680 FGIAKVLQARGGK-DSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       680 fg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      ||++......... ........|+..|+|||.+.+ ..++.++||||||+++|||++|+.||.+....  ..........
T Consensus       151 fg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~--~~~~~~~~~~  228 (334)
T cd07855         151 FGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYV--HQLKLILSVL  228 (334)
T ss_pred             cccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChH--HHHHHHHHHh
Confidence            9999765432211 111234568899999998765 46899999999999999999999999753211  0000000000


Q ss_pred             c----------cccchhhhc---ccccCCC----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          758 D----------TKEGIMEVL---DKKLSGS----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       758 ~----------~~~~~~~~~---~~~~~~~----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .          .........   .......    ......++.+++.+|++.+|++||++.+++.+-.
T Consensus       229 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~  296 (334)
T cd07855         229 GSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPF  296 (334)
T ss_pred             CCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChh
Confidence            0          000000000   0000001    1223467888999999999999999999998754

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=1.9e-33  Score=298.89  Aligned_cols=265  Identities=23%  Similarity=0.308  Sum_probs=192.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|++|.||+|... +|+.||+|.+......        ....+.+.+|++++++++|+|++++++++.+.
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   73 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQED--------EGVPSTAIREISLLKEMQHGNIVRLQDVVHSE   73 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhcccc--------ccchHHHHHHHHHHHhccCCCEeeEEEEEecC
Confidence            45778889999999999999654 7899999987433211        12235678899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-CCCCeeecccc
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVADFGI  682 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~Dfg~  682 (840)
                      ...++||||++ +++.+++.... ..+++..+..++.||+.||+|||+   ++++||||+|+||+++. ++.+||+|||+
T Consensus        74 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dl~p~nill~~~~~~~kl~dfg~  149 (294)
T PLN00009         74 KRLYLVFEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHS---HRVLHRDLKPQNLLIDRRTNALKLADFGL  149 (294)
T ss_pred             CeEEEEEeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCcceEEEECCCCEEEEccccc
Confidence            99999999995 57888775532 346788889999999999999999   99999999999999985 55789999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh-hhccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI-KVDTK  760 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~  760 (840)
                      +......   ........+++.|+|||++.+. .++.++||||+|+++|+|+||+.||....... ........ .....
T Consensus       150 ~~~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~-~~~~~~~~~~~~~~  225 (294)
T PLN00009        150 ARAFGIP---VRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEID-ELFKIFRILGTPNE  225 (294)
T ss_pred             ccccCCC---ccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCh
Confidence            9764321   1122334578899999988664 57899999999999999999999997532110 00000000 00000


Q ss_pred             cc---------hhhhcccccCCC----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 EG---------IMEVLDKKLSGS----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 ~~---------~~~~~~~~~~~~----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..         ............    .......+.+++.+|++.+|++||++.+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        226 ETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             hhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            00         000000000000    11223456788889999999999999999975

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=8.6e-33  Score=289.01  Aligned_cols=245  Identities=23%  Similarity=0.335  Sum_probs=188.2

Q ss_pred             HHHhcCccCee--eccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeee
Q 003199          524 ILEAMTEKNKV--GQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYC  599 (840)
Q Consensus       524 ~~~~~~~~~~l--g~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~  599 (840)
                      ..+.|...+.+  |+|+||.||++.. .++..+|+|.+......             .  .|+.....+ +|+|++++++
T Consensus        12 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~-------------~--~e~~~~~~~~~h~~iv~~~~   76 (267)
T PHA03390         12 FLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN-------------A--IEPMVHQLMKDNPNFIKLYY   76 (267)
T ss_pred             HHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc-------------h--hhHHHHHHhhcCCCEEEEEE
Confidence            34566666665  9999999999854 47889999987433211             0  012222112 6999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-CCeee
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVA  678 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~  678 (840)
                      ++......++||||+++++|.+++.... .+++.++..++.|+++|++|||+   .+++||||||+||+++.++ .++|+
T Consensus        77 ~~~~~~~~~iv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~l~  152 (267)
T PHA03390         77 SVTTLKGHVLIMDYIKDGDLFDLLKKEG-KLSEAEVKKIIRQLVEALNDLHK---HNIIHNDIKLENVLYDRAKDRIYLC  152 (267)
T ss_pred             EEecCCeeEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEeCCCCeEEEe
Confidence            9999999999999999999999998765 78999999999999999999999   9999999999999999988 99999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++....       .....++..|+|||++.+..++.++||||+|+++|||++|+.||............+....  
T Consensus       153 dfg~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~--  223 (267)
T PHA03390        153 DYGLCKIIGT-------PSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ--  223 (267)
T ss_pred             cCccceecCC-------CccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh--
Confidence            9999875432       1234588999999999988899999999999999999999999975433221222221110  


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHH
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-MNEVVQL  806 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-~~evl~~  806 (840)
                               . ............+.+++.+|++.+|.+||+ +++++++
T Consensus       224 ---------~-~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h  262 (267)
T PHA03390        224 ---------Q-KKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKH  262 (267)
T ss_pred             ---------c-ccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhcC
Confidence                     0 000111234456777888999999999996 6998864

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=6.7e-33  Score=291.83  Aligned_cols=245  Identities=23%  Similarity=0.296  Sum_probs=185.9

Q ss_pred             eeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHH---HHHHhccCCCCcceeeeEEecCccce
Q 003199          533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTE---VETLGNIRHKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E---~~~l~~l~h~niv~l~~~~~~~~~~~  608 (840)
                      .||+|+||.||+|.. .+|+.||+|.+.......       ......+..|   ...++...||+|+++++++.+.+..+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   73 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM-------KQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   73 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeecccccc-------chhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEE
Confidence            489999999999955 468999999885433211       0111122233   33455567999999999999999999


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhc
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA  688 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~  688 (840)
                      +||||+++|+|.+++.... .+++..+..++.|++.|++|||+   .+++||||||+||+++.++.++|+|||++.....
T Consensus        74 ~v~e~~~g~~L~~~l~~~~-~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~  149 (278)
T cd05606          74 FILDLMNGGDLHYHLSQHG-VFSEAEMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSK  149 (278)
T ss_pred             EEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCEEcCCCCHHHEEECCCCCEEEccCcCccccCc
Confidence            9999999999999887654 68999999999999999999999   9999999999999999999999999999875532


Q ss_pred             cCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhc
Q 003199          689 RGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL  767 (840)
Q Consensus       689 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  767 (840)
                      .     ......|+..|+|||.+.++ .++.++||||+|+++|||++|+.||............  ..        ....
T Consensus       150 ~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~--~~--------~~~~  214 (278)
T cd05606         150 K-----KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEID--RM--------TLTM  214 (278)
T ss_pred             c-----CCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHH--HH--------hhcc
Confidence            1     12234689999999998754 5899999999999999999999999754221111100  00        0001


Q ss_pred             ccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       768 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      ...+...   ....+.+++.+|+..+|.+||     ++.+++++
T Consensus       215 ~~~~~~~---~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         215 AVELPDS---FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             CCCCCCc---CCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhC
Confidence            1112222   235667788899999999999     99999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=3.8e-33  Score=295.08  Aligned_cols=263  Identities=25%  Similarity=0.332  Sum_probs=198.3

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |...+.||+|++|.||+|... +|+.+|+|++......        ......+.+|++++++++|+||+++++++.....
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   72 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFES--------EGIPKTALREIKLLKELNHPNIIKLLDVFRHKGD   72 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEecccccc--------chhHHHHHHHHHHHHHhcCCCcchHHHhhccCCC
Confidence            456678999999999999654 7899999988543311        1234577889999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++|+||+++ ++.+++......+++..+..++.+++.|++|||+   .+++|+||||+||+++.++.++|+|||.+...
T Consensus        73 ~~~v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~df~~~~~~  148 (283)
T cd05118          73 LYLVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHS---HGILHRDLKPENLLINTEGVLKLADFGLARSF  148 (283)
T ss_pred             EEEEEeccCC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHH---CCeeecCcCHHHEEECCCCcEEEeeeeeeEec
Confidence            9999999965 8888887755578999999999999999999999   99999999999999999999999999998766


Q ss_pred             hccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc-cccchh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD-TKEGIM  764 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~  764 (840)
                      ....   .......++..|+|||.+.+. .++.++||||+|+++|+|++|+.||....... ........... ......
T Consensus       149 ~~~~---~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  224 (283)
T cd05118         149 GSPV---RPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEID-QLFKIFRTLGTPDPEVWP  224 (283)
T ss_pred             CCCc---ccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHcCCCchHhcc
Confidence            4321   122334578899999998776 78999999999999999999999996532100 00000000000 000000


Q ss_pred             hh--------------cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EV--------------LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~--------------~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..              ..............++.+++.+||++||.+||++.+++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~  280 (283)
T cd05118         225 KFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAH  280 (283)
T ss_pred             cchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            00              0000001112345678899999999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-35  Score=277.64  Aligned_cols=247  Identities=29%  Similarity=0.383  Sum_probs=190.8

Q ss_pred             ccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccc
Q 003199          530 EKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  607 (840)
                      ....||.|+||+|+|- ...+|+..|||++.....         ....+++..|.++..+- .+||||+++|++..++..
T Consensus        68 dlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~---------~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdc  138 (361)
T KOG1006|consen   68 DLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI---------EKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDC  138 (361)
T ss_pred             HHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccc---------hHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCce
Confidence            3457999999999996 556899999999955432         23456777888765554 699999999999999999


Q ss_pred             eEEEeecCCCChHHHhh---c-CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          608 LLVYEYMPNGNLWDALH---K-GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~---~-~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      |+.||.| ..|+..+-.   . ....+++.-.-.|..-.+.||.||...  ..|+|||+||+|||+|..|.+|+||||.+
T Consensus       139 WiCMELM-d~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGIc  215 (361)
T KOG1006|consen  139 WICMELM-DISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGIC  215 (361)
T ss_pred             eeeHHHH-hhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccch
Confidence            9999999 456654322   1 234688888889999999999999985  68999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ..+.+    +...+...|-..|||||.+..  ..|+.+|||||+|+.+||+.||..||.+          |.....+   
T Consensus       216 GqLv~----SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~----------w~svfeq---  278 (361)
T KOG1006|consen  216 GQLVD----SIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRK----------WDSVFEQ---  278 (361)
T ss_pred             HhHHH----HHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcch----------HHHHHHH---
Confidence            87743    444566778899999999854  3589999999999999999999999974          3321111   


Q ss_pred             chhhhcccccC-----CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLS-----GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~-----~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       +..++.+..+     ....+....+.+.+.-|+.+|-..||++.+++++
T Consensus       279 -l~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  279 -LCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKF  327 (361)
T ss_pred             -HHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhcC
Confidence             1112211111     1112355677888889999999999999988754

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.9e-33  Score=315.76  Aligned_cols=279  Identities=19%  Similarity=0.246  Sum_probs=190.3

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeC--CCcEEEEEEecccccc-------cccCchhhHHHHHHHHHHHHHHhccCCC
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLN--SGEVVAVKKLWSQRTK-------VSASDTDQLQLDKGLKTEVETLGNIRHK  592 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~-------~~~~~~~~~~~~~~~~~E~~~l~~l~h~  592 (840)
                      ....+.|...+.||+|+||+||++..+  ++..+++|.+......       ..............+.+|+.++++++|+
T Consensus       144 ~~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hp  223 (501)
T PHA03210        144 DEFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHE  223 (501)
T ss_pred             hhhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCC
Confidence            445678999999999999999998554  2333333322111000       0000011123456688999999999999


Q ss_pred             CcceeeeEEecCccceEEEeecCCCChHHHhhcCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEE
Q 003199          593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGL----VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNIL  668 (840)
Q Consensus       593 niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nil  668 (840)
                      ||+++++++...+..++|+|++ .+++.+++....    .......+..++.|++.||+|||+   ++||||||||+|||
T Consensus       224 nIv~l~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~---~gIiHrDLKP~NIL  299 (501)
T PHA03210        224 NILKIEEILRSEANTYMITQKY-DFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD---KKLIHRDIKLENIF  299 (501)
T ss_pred             CcCcEeEEEEECCeeEEEEecc-ccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEE
Confidence            9999999999999999999999 467777765432    123356677899999999999999   99999999999999


Q ss_pred             EcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCC-CCCCCCCC-
Q 003199          669 LDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP-VEDDFGDN-  746 (840)
Q Consensus       669 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p-~~~~~~~~-  746 (840)
                      ++.++.+||+|||+++.+...  .........||+.|+|||++.+..++.++|||||||++|||++|..+ +....... 
T Consensus       300 l~~~~~vkL~DFGla~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~  377 (501)
T PHA03210        300 LNCDGKIVLGDFGTAMPFEKE--REAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPG  377 (501)
T ss_pred             ECCCCCEEEEeCCCceecCcc--cccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHH
Confidence            999999999999999876431  11222345799999999999999999999999999999999998754 43321111 


Q ss_pred             cchhhhhhhhh-cccc------chhhhcccc----cCCCcHH------HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          747 KNIIYWVSIKV-DTKE------GIMEVLDKK----LSGSFRD------EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       747 ~~~~~~~~~~~-~~~~------~~~~~~~~~----~~~~~~~------~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..+........ ...+      ...+.++..    .......      ...++.+++.+|++.||.+|||+.|++++
T Consensus       378 ~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~h  454 (501)
T PHA03210        378 KQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLAL  454 (501)
T ss_pred             HHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            11111000000 0000      000000000    0001111      12345677889999999999999999876

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=4.5e-33  Score=294.96  Aligned_cols=244  Identities=26%  Similarity=0.381  Sum_probs=193.2

Q ss_pred             CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEE
Q 003199          532 NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV  610 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV  610 (840)
                      ..||+|+||.||+|.. .+|+.||||++....          ......+.+|+.+++.++|+|++++++++...+..++|
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~----------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   95 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK----------QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV   95 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccc----------hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEE
Confidence            5799999999999966 478999999873221          12356688999999999999999999999999999999


Q ss_pred             EeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccC
Q 003199          611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG  690 (840)
Q Consensus       611 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~  690 (840)
                      |||+++++|.+++...  .+++..+..++.|++.|++|||+   .+++||||+|+||+++.++.++|+|||.+.....  
T Consensus        96 ~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lH~---~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~--  168 (292)
T cd06657          96 MEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLKALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK--  168 (292)
T ss_pred             EecCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEcccccceeccc--
Confidence            9999999999988654  57999999999999999999999   8999999999999999999999999998865532  


Q ss_pred             CCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       691 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                       .........|++.|+|||++.+..++.++||||+|+++|||++|..||.....  .   ......       .......
T Consensus       169 -~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~--~---~~~~~~-------~~~~~~~  235 (292)
T cd06657         169 -EVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--L---KAMKMI-------RDNLPPK  235 (292)
T ss_pred             -ccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--H---HHHHHH-------HhhCCcc
Confidence             11222345688999999999888889999999999999999999999864211  0   000000       0001111


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      +. ........+.+++.+|++.+|.+||++.+++++
T Consensus       236 ~~-~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         236 LK-NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  270 (292)
T ss_pred             cC-CcccCCHHHHHHHHHHHhCCcccCcCHHHHhcC
Confidence            10 011123456678889999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.7e-33  Score=287.65  Aligned_cols=250  Identities=30%  Similarity=0.417  Sum_probs=200.1

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|++|.||+|... +++.||+|.+......        ....+.+.+|++++++++|+|++++++++.+..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK--------EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSD   72 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccC--------HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCC
Confidence            3667789999999999999654 6889999998544321        233567899999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++.... .+++..+..++.|++.|+.|||+   .+++||||+|+||+++.++.++|+|||.+..
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~  148 (254)
T cd06627          73 SLYIILEYAENGSLRQIIKKFG-PFPESLVAVYVYQVLQGLAYLHE---QGVIHRDIKAANILTTKDGVVKLADFGVATK  148 (254)
T ss_pred             EEEEEEecCCCCcHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEECCCCCEEEecccccee
Confidence            9999999999999999987763 68999999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      .....   .......++..|+|||...+..++.++||||+|+++|+|++|+.||....   .....|. ....       
T Consensus       149 ~~~~~---~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~---~~~~~~~-~~~~-------  214 (254)
T cd06627         149 LNDVS---KDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN---PMAALFR-IVQD-------  214 (254)
T ss_pred             cCCCc---ccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc---HHHHHHH-Hhcc-------
Confidence            64321   11234568889999999888788999999999999999999999986431   1111111 0000       


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       .......   .....+.+++.+|+..+|++||++.+++.+
T Consensus       215 -~~~~~~~---~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~  251 (254)
T cd06627         215 -DHPPLPE---GISPELKDFLMQCFQKDPNLRPTAKQLLKH  251 (254)
T ss_pred             -CCCCCCC---CCCHHHHHHHHHHHhCChhhCcCHHHHhcC
Confidence             0011111   123456678889999999999999999853

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=4.9e-33  Score=295.92  Aligned_cols=255  Identities=26%  Similarity=0.364  Sum_probs=191.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  603 (840)
                      +.|+..+.||+|++|.||+|... +++.||||++.....         ......+.+|+.++.+. .|+||+++++++.+
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~---------~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~   85 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGN---------KEENKRILMDLDVVLKSHDCPYIVKCYGYFIT   85 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCC---------hHHHHHHHHHHHHHHhccCCCchHhhheeeec
Confidence            55777889999999999999776 489999999853321         12234566677766666 49999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+. +++.+.+......+++..+..++.|++.|++|||+.  .+|+||||+|+||++++++.+||+|||++
T Consensus        86 ~~~~~~v~e~~~-~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg~~  162 (296)
T cd06618          86 DSDVFICMELMS-TCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGIS  162 (296)
T ss_pred             CCeEEEEeeccC-cCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccccc
Confidence            999999999985 577776665444789999999999999999999972  48999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCC----CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK----ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ..+...    .......++..|+|||.+.+..    ++.++||||||+++|||++|+.||........    ........
T Consensus       163 ~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~----~~~~~~~~  234 (296)
T cd06618         163 GRLVDS----KAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFE----VLTKILQE  234 (296)
T ss_pred             hhccCC----CcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHH----HHHHHhcC
Confidence            765321    1222345788999999986553    78899999999999999999999864211100    00000000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .       ...... ......++.+++.+|++.||++||++.+++++-.
T Consensus       235 ~-------~~~~~~-~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~  275 (296)
T cd06618         235 E-------PPSLPP-NEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPF  275 (296)
T ss_pred             C-------CCCCCC-CCCCCHHHHHHHHHHccCChhhCCCHHHHhcChh
Confidence            0       000110 0112345778888999999999999999997743

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.1e-32  Score=287.41  Aligned_cols=253  Identities=29%  Similarity=0.391  Sum_probs=202.7

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC--
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL--  604 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--  604 (840)
                      |...+.||+|++|.||+|... +++.|++|++......        ....+.+.+|++++++++|+||+++++.+...  
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   73 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS--------EEELEALEREIRILSSLQHPNIVRYYGSERDEEK   73 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccc--------hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCC
Confidence            566788999999999999665 7899999998544321        33467789999999999999999999999888  


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|+||+++++|.+++.... .+++..+..++.+++.|++|||+   .+++|+||+|+||+++.++.++|+|||.+.
T Consensus        74 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~---~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~  149 (260)
T cd06606          74 NTLNIFLEYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGLAYLHS---NGIVHRDIKGANILVDSDGVVKLADFGCAK  149 (260)
T ss_pred             CeEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEcccccEE
Confidence            88999999999999999998765 78999999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....... ........++..|+|||...+...+.++||||||+++|+|++|+.||.....  .....+   ....     
T Consensus       150 ~~~~~~~-~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~---~~~~-----  218 (260)
T cd06606         150 RLGDIET-GEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGN--PMAALY---KIGS-----  218 (260)
T ss_pred             ecccccc-cccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc--hHHHHH---hccc-----
Confidence            7643211 0113445688999999999888899999999999999999999999975420  000000   0000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         ..............+.+++.+|++.+|++||++.+++++
T Consensus       219 ---~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~  257 (260)
T cd06606         219 ---SGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQH  257 (260)
T ss_pred             ---cCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhC
Confidence               001111112224567788889999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.2e-32  Score=297.35  Aligned_cols=263  Identities=23%  Similarity=0.326  Sum_probs=191.7

Q ss_pred             eeecc--CCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceE
Q 003199          533 KVGQG--GSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       533 ~lg~G--~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      .||+|  +||+||+|.. .+|+.||||++......        ....+.+.+|+.+++.++||||+++++++...+..++
T Consensus         5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~   76 (328)
T cd08226           5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCT--------EEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWV   76 (328)
T ss_pred             HhCCcccCceeEEEEEEcCCCcEEEEEEeccccCC--------HHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEE
Confidence            46666  9999999965 47999999998533211        2234678899999999999999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhc
Q 003199          610 VYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA  688 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~  688 (840)
                      |+||+.++++.+++.... ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++.++++||+.+.....
T Consensus        77 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~  153 (328)
T cd08226          77 ISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQ---NGYIHRNIKASHILISGDGLVSLSGLSHLYSLVR  153 (328)
T ss_pred             EEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEeCCCcEEEechHHHhhhhc
Confidence            999999999999987642 358899999999999999999999   8999999999999999999999999987654432


Q ss_pred             cCCCCc----ceecccccccccCccccccC--CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh-----
Q 003199          689 RGGKDS----TTTVIAGTYGYLAPEYAYSS--KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV-----  757 (840)
Q Consensus       689 ~~~~~~----~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-----  757 (840)
                      .+....    ......++..|+|||++.+.  .++.++|||||||++|||++|+.||....... ..........     
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~  232 (328)
T cd08226         154 NGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQ-MLLQKLKGPPYSPLD  232 (328)
T ss_pred             cCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHH-HHHHHhcCCCCCCcc
Confidence            211111    01112345679999998763  47899999999999999999999997532110 0000000000     


Q ss_pred             ------------ccccc----hh----------hhcccccC-CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 ------------DTKEG----IM----------EVLDKKLS-GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ------------~~~~~----~~----------~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                                  .....    +.          .+....+. +........+.+++.+|++.||++|||+.|++++-
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~  309 (328)
T cd08226         233 ITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHA  309 (328)
T ss_pred             ccccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCH
Confidence                        00000    00          00000011 11123456788999999999999999999998774

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.8e-33  Score=304.80  Aligned_cols=265  Identities=22%  Similarity=0.312  Sum_probs=195.8

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..+|...+.||+|+||+||+|.. .+|+.||||.+......        ......+.+|+.+++.++|+||+++++++..
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~   75 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDN--------RIDAKRTLREIKLLRHLDHENVIAIKDIMPP   75 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccc--------cchhHHHHHHHHHHHhcCCCCccchHHheec
Confidence            35688888999999999999954 57899999988532211        1223456789999999999999999998754


Q ss_pred             C-----ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          604 L-----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       604 ~-----~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      .     ...++|+||+. ++|.+++.... .+++..+..++.|++.||.|||+   ++++||||||+||+++.++.+||+
T Consensus        76 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dlkp~Nil~~~~~~~kL~  150 (337)
T cd07858          76 PHREAFNDVYIVYELMD-TDLHQIIRSSQ-TLSDDHCQYFLYQLLRGLKYIHS---ANVLHRDLKPSNLLLNANCDLKIC  150 (337)
T ss_pred             ccccccCcEEEEEeCCC-CCHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEEC
Confidence            3     34799999995 78988887654 68999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      |||+++.....+   .......++..|+|||.+.. ..++.++|||||||++|+|++|+.||....... ..........
T Consensus       151 Dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~  226 (337)
T cd07858         151 DFGLARTTSEKG---DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVH-QLKLITELLG  226 (337)
T ss_pred             cCccccccCCCc---ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHH-HHHHHHHHhC
Confidence            999997654321   12234467889999998765 468999999999999999999999997532100 0000000000


Q ss_pred             c-c--------ccchhhhc---c----cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 D-T--------KEGIMEVL---D----KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ~-~--------~~~~~~~~---~----~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      . .        ........   .    ............++.+++.+|++.+|++|||+++++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h  291 (337)
T cd07858         227 SPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAH  291 (337)
T ss_pred             CCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcC
Confidence            0 0        00000000   0    00001112234567889999999999999999999988

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=1.7e-32  Score=293.79  Aligned_cols=248  Identities=29%  Similarity=0.365  Sum_probs=193.1

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .|...+.||+|+||+||+|.. .+|+.||+|++......       .....+.+.+|+++++.++|+|++++++++.+..
T Consensus        22 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~-------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   94 (313)
T cd06633          22 IFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQ-------TNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEH   94 (313)
T ss_pred             HhhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccC-------chHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCC
Confidence            356677899999999999965 46899999988433211       1223456888999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+. |++.+.+......+++.++..++.|++.|++|||+   .+++||||+|+||+++.++.++|+|||++..
T Consensus        95 ~~~lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dl~p~nili~~~~~~kL~dfg~~~~  170 (313)
T cd06633          95 TAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSASK  170 (313)
T ss_pred             EEEEEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChhhEEECCCCCEEEeecCCCcc
Confidence            9999999995 68888887655578999999999999999999999   8999999999999999999999999999854


Q ss_pred             hhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ..       ......|+..|+|||++.   ...++.++||||||+++|||++|..||.....  .......   .. .  
T Consensus       171 ~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~--~~~~~~~---~~-~--  235 (313)
T cd06633         171 SS-------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALYHI---AQ-N--  235 (313)
T ss_pred             cC-------CCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHH---Hh-c--
Confidence            31       122456888999999874   45688999999999999999999999865311  1111000   00 0  


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         .........   ....+.+++.+|++.+|.+||++.+++.+
T Consensus       236 ---~~~~~~~~~---~~~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         236 ---DSPTLQSNE---WTDSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             ---CCCCCCccc---cCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence               000001111   22346678889999999999999999976

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=1.1e-32  Score=294.58  Aligned_cols=253  Identities=26%  Similarity=0.343  Sum_probs=196.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..+.||+|+||.||+|... +++.||+|.+......       .......+.+|+++++.++|+|++++++++...
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~-------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   87 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ-------SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE   87 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEeccccc-------ChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcC
Confidence            34666788999999999999654 6889999987432111       122345678899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+. |++.+.+......+++.++..++.|++.|+.|||+   .+++||||+|+||+++.++.++|+|||++.
T Consensus        88 ~~~~lv~e~~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  163 (308)
T cd06634          88 HTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSAS  163 (308)
T ss_pred             CeeEEEEEccC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHhEEECCCCcEEECCcccce
Confidence            99999999996 68888776555568999999999999999999999   999999999999999999999999999986


Q ss_pred             hhhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ....       .....+++.|+|||.+.   ...++.++|||||||++|||++|+.||...... ....           
T Consensus       164 ~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~-----------  224 (308)
T cd06634         164 IMAP-------ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-SALY-----------  224 (308)
T ss_pred             eecC-------cccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHH-HHHH-----------
Confidence            5422       22346788999999874   356788999999999999999999998642110 0000           


Q ss_pred             chhhhcccccCC-CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          762 GIMEVLDKKLSG-SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       762 ~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                         ......... ........+.+++.+||+.+|++||++.+++++-....
T Consensus       225 ---~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~  272 (308)
T cd06634         225 ---HIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR  272 (308)
T ss_pred             ---HHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCccccc
Confidence               000000000 01123345677888999999999999999998866544

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.5e-33  Score=304.07  Aligned_cols=269  Identities=25%  Similarity=0.310  Sum_probs=195.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..+|...+.||+|+||.||+|.. .+|+.||||++......        ......+.+|+.+++.++|+||+++++++..
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~   85 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQS--------EIFAKRAYRELTLLKHMQHENVIGLLDVFTS   85 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCcccc--------ccchhHHHHHHHHHHhcCCCCccchhheecc
Confidence            35788889999999999999965 57999999988543211        1223457789999999999999999998865


Q ss_pred             Cc------cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 LY------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 ~~------~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      ..      ..++|+||+. .++.++..   ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||
T Consensus        86 ~~~~~~~~~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dlkp~NIll~~~~~~kL  158 (342)
T cd07879          86 AVSGDEFQDFYLVMPYMQ-TDLQKIMG---HPLSEDKVQYLVYQMLCGLKYIHS---AGIIHRDLKPGNLAVNEDCELKI  158 (342)
T ss_pred             cccCCCCceEEEEecccc-cCHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEE
Confidence            43      4589999996 47766653   258999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh-
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI-  755 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-  755 (840)
                      +|||+++....      ......++..|+|||.+.+ ..++.++|||||||++|||++|+.||.+..... ........ 
T Consensus       159 ~dfg~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~-~~~~~~~~~  231 (342)
T cd07879         159 LDFGLARHADA------EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVT  231 (342)
T ss_pred             eeCCCCcCCCC------CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhc
Confidence            99999875421      1223467889999998866 468899999999999999999999997532100 00000000 


Q ss_pred             hhcccc--------chhhhc---c----cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcCCCCC
Q 003199          756 KVDTKE--------GIMEVL---D----KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEADPCRF  815 (840)
Q Consensus       756 ~~~~~~--------~~~~~~---~----~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~~~~~  815 (840)
                      ......        ......   .    ..+...+......+.+++.+|++.||++||++.+++.+  ++.......
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~~~  308 (342)
T cd07879         232 GVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDADE  308 (342)
T ss_pred             CCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccccc
Confidence            000000        000000   0    00000111223457789999999999999999999976  666655433

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=8.1e-33  Score=293.48  Aligned_cols=255  Identities=24%  Similarity=0.315  Sum_probs=194.8

Q ss_pred             cCccCeeeccCCcEEEEEEe----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          528 MTEKNKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      |+..+.||.|+||.||+|..    .+|+.||+|++.....      .......+.+.+|+.+++++ .|+||+++++++.
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~------~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~   75 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATI------VQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ   75 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhh------hhcchHHHHHHHHHHHHHhcccCCChhceeeEee
Confidence            56778999999999999865    3689999999854321      11123346678899999999 5999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      .....++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+++||||+|+||++++++.+||+|||+
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~  151 (290)
T cd05613          76 TDTKLHLILDYINGGELFTHLSQRE-RFKEQEVQIYSGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGL  151 (290)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEECCCCCEEEeeCcc
Confidence            9889999999999999999997654 68899999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccC--CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS--KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +......  .........|+..|+|||.+...  .++.++||||||+++|+|++|+.||..... ......+....... 
T Consensus       152 ~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~-~~~~~~~~~~~~~~-  227 (290)
T cd05613         152 SKEFHED--EVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGE-KNSQAEISRRILKS-  227 (290)
T ss_pred             ceecccc--cccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCc-cccHHHHHHHhhcc-
Confidence            9765331  11222345688999999988653  467899999999999999999999864211 11111111110000 


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                             ....+.   .....+.+++.+|++.||++||     ++.+++++
T Consensus       228 -------~~~~~~---~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~  268 (290)
T cd05613         228 -------EPPYPQ---EMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKH  268 (290)
T ss_pred             -------CCCCCc---cCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcC
Confidence                   011111   1234566788899999999997     77777765

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=6.5e-33  Score=293.91  Aligned_cols=258  Identities=23%  Similarity=0.301  Sum_probs=197.5

Q ss_pred             cCccCeeeccCCcEEEEEEe----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          528 MTEKNKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      |+..+.||+|++|.||+|..    .+++.||||++.....      .......+.+.+|++++.++ .|+||+++++.+.
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~------~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~   75 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATI------VQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQ   75 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHH------HhhhhHHHHHHHHHHHHHhccCCcchhhhheeee
Confidence            56678899999999999854    3578899999853321      11223456788999999999 5999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      .....++||||+++|+|.+++.... .+++..+..++.|+++||+|||+   .+++||||+|+||+++.++.++++|||+
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~ql~~~l~~lH~---~~~~H~dl~p~nil~~~~~~~~l~dfg~  151 (288)
T cd05583          76 TDTKLHLILDYVNGGELFTHLYQRE-HFTESEVRVYIAEIVLALDHLHQ---LGIIYRDIKLENILLDSEGHVVLTDFGL  151 (288)
T ss_pred             cCCEEEEEEecCCCCcHHHHHhhcC-CcCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEEECcc
Confidence            9999999999999999999987653 68899999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCC--CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK--ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ++.....  .........|+..|+|||...+..  .+.++||||||+++|||++|..||...... .......+....  
T Consensus       152 ~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-~~~~~~~~~~~~--  226 (288)
T cd05583         152 SKEFLAE--EEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQ-NSQSEISRRILK--  226 (288)
T ss_pred             ccccccc--cccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCccc-chHHHHHHHHHc--
Confidence            8765432  111223346889999999987654  788999999999999999999998642111 111111110000  


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                            .....+..   ....+.+++.+|++.||++|||+.++.+.|..
T Consensus       227 ------~~~~~~~~---~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~  266 (288)
T cd05583         227 ------SKPPFPKT---MSAEARDFIQKLLEKDPKKRLGANGADEIKNH  266 (288)
T ss_pred             ------cCCCCCcc---cCHHHHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence                  01111122   23456678889999999999998888777665

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=1.3e-33  Score=272.80  Aligned_cols=273  Identities=22%  Similarity=0.316  Sum_probs=199.3

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCC----cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCccee
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSG----EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKL  597 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~----~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l  597 (840)
                      +....|+....||+|.||.||+|.. ++.    ..+|+|+++..+...        .......+|+..++.++|||++.+
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~t--------GiS~SAcREiaL~REl~h~nvi~L   92 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGT--------GISMSACREIALLRELKHPNVISL   92 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCC--------CcCHHHHHHHHHHHHhcCCcchhH
Confidence            4566788899999999999999943 322    278999997664321        122445689999999999999999


Q ss_pred             eeEEec-CccceEEEeecCCCChHHHhhcC----CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          598 YCYFSS-LYCNLLVYEYMPNGNLWDALHKG----LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       598 ~~~~~~-~~~~~lV~e~~~~gsL~~~l~~~----~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      ...+-+ +...++++||.+. +|...++-.    ...++-..+..|..||+.|+.|||+   .=|+||||||.|||+..+
T Consensus        93 v~Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~---NWvlHRDLKPaNIlvmgd  168 (438)
T KOG0666|consen   93 VKVFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHS---NWVLHRDLKPANILVMGD  168 (438)
T ss_pred             HHHHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhh---hheeeccCCcceEEEecc
Confidence            988876 7888999999965 888877533    2578889999999999999999999   778999999999999877


Q ss_pred             ----CCCeeecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCc
Q 003199          673 ----YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNK  747 (840)
Q Consensus       673 ----~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~  747 (840)
                          |.|||+|||+|+.+...-..-.....++-|..|.|||.+.+. .||.+.||||.|||+.||+|-++-|.+......
T Consensus       169 gperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~  248 (438)
T KOG0666|consen  169 GPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIK  248 (438)
T ss_pred             CCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcc
Confidence                899999999999986543333344566789999999998875 589999999999999999999888876433111


Q ss_pred             --------------------chhhhhhhhhcccc-c-hhhhcccccCCC-cHH-------HHHHHHHHHHHccCCCCCCC
Q 003199          748 --------------------NIIYWVSIKVDTKE-G-IMEVLDKKLSGS-FRD-------EMIQVLRIAIRCTSKSPATR  797 (840)
Q Consensus       748 --------------------~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-~~~-------~~~~l~~l~~~cl~~dP~~R  797 (840)
                                          ....|-..+..... . +.++-....... ...       .....++|...++..||.+|
T Consensus       249 ~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kR  328 (438)
T KOG0666|consen  249 TKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKR  328 (438)
T ss_pred             cCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhh
Confidence                                01111111110000 0 000000000000 000       01236788889999999999


Q ss_pred             CCHHHHHHHh
Q 003199          798 PTMNEVVQLL  807 (840)
Q Consensus       798 ps~~evl~~L  807 (840)
                      .|+.+++++.
T Consensus       329 Ita~qAleh~  338 (438)
T KOG0666|consen  329 ITAEQALEHP  338 (438)
T ss_pred             ccHHHHhccc
Confidence            9999998874

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-34  Score=292.43  Aligned_cols=247  Identities=26%  Similarity=0.325  Sum_probs=199.1

Q ss_pred             cCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceE
Q 003199          531 KNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      .+.||+|.||+||-| ..++|+.||||++.+.+-.        .+....+.+|+.++..+.||.||.+...|+..+..+.
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp--------~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFV  640 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFP--------TKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFV  640 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCC--------CchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEE
Confidence            478999999999999 4568999999999554422        2334778999999999999999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC---CCCeeecccchhhh
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN---YQPKVADFGIAKVL  686 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~Dfg~a~~~  686 (840)
                      |||-+.|.-|.-.+.....++++.....++.||+.||.|||.   ++|||+||||+|||+.+.   ..+||||||.|++.
T Consensus       641 VMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~---knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiI  717 (888)
T KOG4236|consen  641 VMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHF---KNIVHCDLKPENVLLASASPFPQVKLCDFGFARII  717 (888)
T ss_pred             EehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhh---cceeeccCCchheeeccCCCCCceeeccccceeec
Confidence            999996555555566555689999999999999999999999   999999999999999653   47999999999998


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      .    +..-.....|||.|.|||++.++.|...-|+||.|||+|--++|..||..+.+    +.+.          +++.
T Consensus       718 g----EksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEd----IndQ----------IQNA  779 (888)
T KOG4236|consen  718 G----EKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDED----INDQ----------IQNA  779 (888)
T ss_pred             c----hhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccc----hhHH----------hhcc
Confidence            4    34455678899999999999999999999999999999999999999975321    1110          1111


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .-...+.-+.+.....++++...++..=++|.|....+.+
T Consensus       780 aFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh  819 (888)
T KOG4236|consen  780 AFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLSH  819 (888)
T ss_pred             ccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhccc
Confidence            1111223345666677788888888888999988876654

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-32  Score=291.53  Aligned_cols=261  Identities=25%  Similarity=0.323  Sum_probs=194.2

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecCc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLY  605 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~  605 (840)
                      |...+.||+|++|+||+|... +++.||||++......         .......+|+..+++++ |+|++++++++.+.+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~---------~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~   71 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS---------WEECMNLREVKSLRKLNEHPNIVKLKEVFREND   71 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc---------hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCC
Confidence            456788999999999999775 5789999988543211         11223456899999998 999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+ +|++.+.+.... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||.+.
T Consensus        72 ~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~  147 (283)
T cd07830          72 ELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLAR  147 (283)
T ss_pred             cEEEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCCEEEeecccce
Confidence            999999999 889999887653 468999999999999999999999   899999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCccccc-cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc-----------hhhh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN-----------IIYW  752 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~-----------~~~~  752 (840)
                      ....    ........++..|+|||++. +..++.++|+||||+++|||++|+.||.........           ...|
T Consensus       148 ~~~~----~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (283)
T cd07830         148 EIRS----RPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDW  223 (283)
T ss_pred             eccC----CCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhh
Confidence            6532    11223356788999999874 445789999999999999999999998653211000           0001


Q ss_pred             hhhhhccccchhhhcccccCCC----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          753 VSIKVDTKEGIMEVLDKKLSGS----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....... ..............    .......+.+++.+|++.+|++||+++|++.+
T Consensus       224 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         224 PEGYKLA-SKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             hhHhhhh-ccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhC
Confidence            0000000 00000000000010    11123568889999999999999999999865

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-33  Score=277.42  Aligned_cols=257  Identities=21%  Similarity=0.205  Sum_probs=202.1

Q ss_pred             hcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      +++....+.+|.||+||+|.|.      +.+.|.||.++...         .......+..|-..+..+.|||+.++.+.
T Consensus       285 Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~A---------S~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  285 RVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHA---------SQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             heechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcc---------cHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            4555667899999999999554      34567778764332         12345678889999999999999999998


Q ss_pred             Eec-CccceEEEeecCCCChHHHhhcC-------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC
Q 003199          601 FSS-LYCNLLVYEYMPNGNLWDALHKG-------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN  672 (840)
Q Consensus       601 ~~~-~~~~~lV~e~~~~gsL~~~l~~~-------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~  672 (840)
                      +.+ ....+.+|.++.-|+|..++...       ...+.-.+...++.|++.|++|||.   ++|||.||.++|+++|+.
T Consensus       356 ~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~---~~ViHkDiAaRNCvIdd~  432 (563)
T KOG1024|consen  356 SIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHN---HGVIHKDIAARNCVIDDQ  432 (563)
T ss_pred             EeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHh---cCcccchhhhhcceehhh
Confidence            855 55668889999999999999821       2456667888899999999999999   999999999999999999


Q ss_pred             CCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhh
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~  751 (840)
                      ..+||+|=.+++.+-+.+ ..--......+..|||||.+.+..|+.++|||||||++|||+| |+.||.+-         
T Consensus       433 LqVkltDsaLSRDLFP~D-YhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeI---------  502 (563)
T KOG1024|consen  433 LQVKLTDSALSRDLFPGD-YHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEI---------  502 (563)
T ss_pred             eeEEeccchhccccCccc-ccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCcccc---------
Confidence            999999999998775421 1112233445678999999999999999999999999999999 99998742         


Q ss_pred             hhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                            +..+...-+.|+..-....+++.+++.++.-||..+|++||++++++.-|.++.
T Consensus       503 ------DPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~  556 (563)
T KOG1024|consen  503 ------DPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFH  556 (563)
T ss_pred             ------CHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence                  111211223344433444566778899999999999999999999999998753

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=8.3e-33  Score=289.32  Aligned_cols=250  Identities=25%  Similarity=0.354  Sum_probs=194.9

Q ss_pred             eeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       534 lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      ||.|+||.||+|... +|+.||+|++.....       ......+.+.+|++++++++|+|++++++.+......++|+|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~-------~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   73 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADM-------IRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVME   73 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhh-------hhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEe
Confidence            689999999999776 599999998843321       113446778899999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCC
Q 003199          613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK  692 (840)
Q Consensus       613 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  692 (840)
                      |+++++|.+++.... .+++..+..++.|++.||+|||+   .+++||||+|+||++++++.++|+|||++.........
T Consensus        74 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~  149 (265)
T cd05579          74 YLPGGDLASLLENVG-SLDEDVARIYIAEIVLALEYLHS---NGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQI  149 (265)
T ss_pred             cCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCCCHHHeEEcCCCCEEEEecccchhcccCccc
Confidence            999999999998755 68999999999999999999999   99999999999999999999999999998765322110


Q ss_pred             -----CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhc
Q 003199          693 -----DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL  767 (840)
Q Consensus       693 -----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  767 (840)
                           ........++..|+|||...+...+.++||||||+++||+++|+.||.....  .   .........        
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~--~---~~~~~~~~~--------  216 (265)
T cd05579         150 NLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP--E---EIFQNILNG--------  216 (265)
T ss_pred             ccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH--H---HHHHHHhcC--------
Confidence                 1123445678899999999888899999999999999999999999965321  0   011000000        


Q ss_pred             ccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       768 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ...... .......+.+++.+|++.+|++||++.++.+.|.
T Consensus       217 ~~~~~~-~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         217 KIEWPE-DVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             CcCCCc-cccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence            000011 1112456778888999999999999955555443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=7.2e-33  Score=299.66  Aligned_cols=272  Identities=26%  Similarity=0.320  Sum_probs=202.8

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|+..+.||+|++|.||+|... +|+.||||++.....        .....+.+.+|+++++.++|+||+++++++....
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--------~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFD--------DLIDAKRILREIKLLRHLRHENIIGLLDILRPPS   72 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccc--------cchhhhhHHHHHHHHHhcCCcchhhhhhhhcccC
Confidence            3677889999999999999765 589999998854321        1233467889999999999999999999987765


Q ss_pred             -----cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          606 -----CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       606 -----~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                           ..++||||++ ++|.+++.... .+++..+..++.+++.||+|||+   .+|+||||||+||+++.++.++|+||
T Consensus        73 ~~~~~~~~lv~e~~~-~~l~~~l~~~~-~l~~~~~~~i~~~l~~~l~~LH~---~gi~H~dlkp~nili~~~~~~~L~df  147 (330)
T cd07834          73 PEDFNDVYIVTELME-TDLHKVIKSPQ-PLTDDHIQYFLYQILRGLKYLHS---ANVIHRDLKPSNILVNSNCDLKICDF  147 (330)
T ss_pred             cccccceEEEecchh-hhHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEccc
Confidence                 7799999997 58999887655 78999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc-
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD-  758 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~-  758 (840)
                      |.+.................++..|+|||++.+. .++.++||||+|+++|+|++|+.||.......  .......... 
T Consensus       148 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~--~~~~i~~~~~~  225 (330)
T cd07834         148 GLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYID--QLNLIVEVLGT  225 (330)
T ss_pred             CceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHH--HHHHHHHhcCC
Confidence            9998764422111223345678899999999887 78999999999999999999999997542100  0000000000 


Q ss_pred             ---------cccchhhhccc---c----cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcCCC
Q 003199          759 ---------TKEGIMEVLDK---K----LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEADPC  813 (840)
Q Consensus       759 ---------~~~~~~~~~~~---~----~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~~~  813 (840)
                               ........+..   .    +..........+.+++.+||+.+|++||++.+++++  ++.....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~  298 (330)
T cd07834         226 PSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDP  298 (330)
T ss_pred             CChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhccc
Confidence                     00000000000   0    000011234567889999999999999999999987  5554443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-32  Score=287.20  Aligned_cols=244  Identities=24%  Similarity=0.281  Sum_probs=185.0

Q ss_pred             CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHH-HhccCCCCcceeeeEEecCccceE
Q 003199          532 NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET-LGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      +.||+|+||.||+|.. .+|+.||||++.....       ........+..|..+ .....|+|++++++++...+..++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~l   74 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDM-------IAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYL   74 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhh-------hHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEE
Confidence            4699999999999965 4689999998843221       011122334445444 445589999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      |+||+++++|.+++.... .+++..+..++.|++.||.|||+   .+++||||+|+||++++++.++|+|||+++.... 
T Consensus        75 v~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~-  149 (260)
T cd05611          75 VMEYLNGGDCASLIKTLG-GLPEDWAKQYIAEVVLGVEDLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE-  149 (260)
T ss_pred             EEeccCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEeecccceeccc-
Confidence            999999999999997654 68899999999999999999999   8999999999999999999999999999865422 


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK  769 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  769 (840)
                            .....++..|+|||.+.+..++.++||||||+++|||++|..||.....    ...+......         ..
T Consensus       150 ------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~---------~~  210 (260)
T cd05611         150 ------NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP----DAVFDNILSR---------RI  210 (260)
T ss_pred             ------cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH----HHHHHHHHhc---------cc
Confidence                  2234688899999999888889999999999999999999999964311    1111111000         00


Q ss_pred             ccCC-CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          770 KLSG-SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       770 ~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .... ........+.+++.+|++.+|++||++.++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~  248 (260)
T cd05611         211 NWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEI  248 (260)
T ss_pred             CCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHH
Confidence            0011 111234567788889999999999977544443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=1.9e-32  Score=294.28  Aligned_cols=262  Identities=21%  Similarity=0.202  Sum_probs=189.2

Q ss_pred             eeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      .+|.|+++.||++.. +++.||||++.....        .....+.+..|+++++.++|+||+++++++.+....+++||
T Consensus         9 ~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~--------~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e   79 (314)
T cd08216           9 CFEDLMIVHLAKHKP-TNTLVAVKKINLDSC--------SKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSP   79 (314)
T ss_pred             hhcCCceEEEEEecC-CCCEEEEEEEecccc--------chhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEe
Confidence            345555555555544 699999999854311        12335678999999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCC
Q 003199          613 YMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG  691 (840)
Q Consensus       613 ~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~  691 (840)
                      |+++|++.+++... ...+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+|++|||.+......+.
T Consensus        80 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~---~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~  156 (314)
T cd08216          80 LMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHS---KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGK  156 (314)
T ss_pred             ccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCcceEEEecCCceEEecCccceeeccccc
Confidence            99999999999864 3468899999999999999999999   9999999999999999999999999998865532211


Q ss_pred             C----CcceecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh----c---
Q 003199          692 K----DSTTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV----D---  758 (840)
Q Consensus       692 ~----~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~----~---  758 (840)
                      .    ........++..|+|||++..  ..++.++|||||||++|||++|+.||....... ..........    .   
T Consensus       157 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~  235 (314)
T cd08216         157 RQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQ-MLLEKVRGTVPCLLDKST  235 (314)
T ss_pred             cccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhccCccccccCc
Confidence            1    111233457788999999866  357899999999999999999999997532110 0000000000    0   


Q ss_pred             ---cccchhh----hccccc-----CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          759 ---TKEGIME----VLDKKL-----SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       759 ---~~~~~~~----~~~~~~-----~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                         .......    ..+...     .........++.+++.+||+.||++|||+.+++++-
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p  296 (314)
T cd08216         236 YPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHS  296 (314)
T ss_pred             hhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCc
Confidence               0000000    000000     001122345678899999999999999999999874

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.6e-32  Score=297.95  Aligned_cols=265  Identities=23%  Similarity=0.300  Sum_probs=195.3

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ..+.++|...+.||+|+||.||+|. ..+|+.||+|++.....        .....+.+.+|+.++++++|+||++++++
T Consensus        13 ~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~   84 (345)
T cd07877          13 WEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ--------SIIHAKRTYRELRLLKHMKHENVIGLLDV   84 (345)
T ss_pred             hhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcch--------hhHHHHHHHHHHHHHHHcCCCcccceeee
Confidence            4456789999999999999999995 45799999998854321        12234567789999999999999999998


Q ss_pred             EecC------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          601 FSSL------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       601 ~~~~------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      +...      ...+++++++ +++|.+++...  .+++..+..++.|+++|++|||+   .+|+||||||+||++++++.
T Consensus        85 ~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~  158 (345)
T cd07877          85 FTPARSLEEFNDVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCE  158 (345)
T ss_pred             eeecccccccccEEEEehhc-ccCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEcCCCC
Confidence            7543      3457888887 78998888654  58999999999999999999999   99999999999999999999


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      +||+|||+++....      ......++..|+|||.+.+ ..++.++|||||||++|||++|+.||...... .......
T Consensus       159 ~kl~dfg~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~-~~~~~~~  231 (345)
T cd07877         159 LKILDFGLARHTDD------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLIL  231 (345)
T ss_pred             EEEecccccccccc------cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHH
Confidence            99999999875422      2233467889999998766 46788999999999999999999999653211 0000000


Q ss_pred             hhhhccccchh------------hhcccccCCCcH----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          754 SIKVDTKEGIM------------EVLDKKLSGSFR----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       754 ~~~~~~~~~~~------------~~~~~~~~~~~~----~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ...........            ..........+.    .....+.+++.+|++.||.+||++.+++.+=
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~  301 (345)
T cd07877         232 RLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHA  301 (345)
T ss_pred             HHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcCh
Confidence            00000000000            000000000011    1234577899999999999999999999874

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-32  Score=289.58  Aligned_cols=264  Identities=28%  Similarity=0.354  Sum_probs=197.7

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |+..+.||+|++|.||+|... +++.||+|++.....        .....+.+..|++++++++|+|++++++++.+...
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~--------~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   72 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNE--------EEGIPSTALREISLLKELKHPNIVKLLDVIHTERK   72 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccc--------cccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCc
Confidence            445678999999999999665 589999999854321        12224567789999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++|+||++ ++|.+++......+++..+..++.+++.||+|||+   .+++||||+|+||++++++.++|+|||.++..
T Consensus        73 ~~~v~e~~~-~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~  148 (282)
T cd07829          73 LYLVFEYCD-MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHS---HRILHRDLKPQNILINRDGVLKLADFGLARAF  148 (282)
T ss_pred             eEEEecCcC-cCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChheEEEcCCCCEEEecCCccccc
Confidence            999999997 59999998764578999999999999999999999   89999999999999999999999999998765


Q ss_pred             hccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCc-----------chhhhhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNK-----------NIIYWVS  754 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-----------~~~~~~~  754 (840)
                      ...   ........++..|+|||.+.+. .++.++||||||+++|||++|+.||........           ....|..
T Consensus       149 ~~~---~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (282)
T cd07829         149 GIP---LRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPG  225 (282)
T ss_pred             CCC---ccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHh
Confidence            331   1122334567789999998766 789999999999999999999999965321100           0000100


Q ss_pred             hhhcc--ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          755 IKVDT--KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       755 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .....  ......................+.+++.+|++.||++||++.+++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  279 (282)
T cd07829         226 VTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKH  279 (282)
T ss_pred             hcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhhC
Confidence            00000  00000000000001111224568889999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=1.1e-32  Score=298.57  Aligned_cols=276  Identities=21%  Similarity=0.245  Sum_probs=196.2

Q ss_pred             HhcCc-cCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccC----chhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTE-KNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSAS----DTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~-~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~----~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|.. .+.||+|+||+||+|.. .+++.||||.+..........    ..........+.+|+++++.++|+||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            34543 46799999999999964 479999999985433221000    0000111235788999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      ++......++||||++ |+|.+++.... .+++.....++.|++.||+|||+   .+++||||+|+||+++.++.++++|
T Consensus        88 ~~~~~~~~~lv~e~~~-~~l~~~l~~~~-~~~~~~~~~~~~ql~~aL~~LH~---~~i~H~dl~~~nill~~~~~~kl~d  162 (335)
T PTZ00024         88 VYVEGDFINLVMDIMA-SDLKKVVDRKI-RLTESQVKCILLQILNGLNVLHK---WYFMHRDLSPANIFINSKGICKIAD  162 (335)
T ss_pred             EEecCCcEEEEEeccc-cCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHeEECCCCCEEECC
Confidence            9999999999999996 68999887643 68999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCC-----------CCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCc
Q 003199          680 FGIAKVLQARGG-----------KDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNK  747 (840)
Q Consensus       680 fg~a~~~~~~~~-----------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~  747 (840)
                      ||.++.......           .........++..|+|||.+.+. .++.++||||+|+++|||++|+.||....... 
T Consensus       163 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~-  241 (335)
T PTZ00024        163 FGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEID-  241 (335)
T ss_pred             ccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-
Confidence            999976541110           01112234567889999988764 46899999999999999999999997542211 


Q ss_pred             chhhhhhhhhcc-ccchh------------hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          748 NIIYWVSIKVDT-KEGIM------------EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       748 ~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      .+.......... ...+.            ................++.+++.+|++.+|++||++.|++.+-
T Consensus       242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~  314 (335)
T PTZ00024        242 QLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHE  314 (335)
T ss_pred             HHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCc
Confidence            000000000000 00000            0000000011112235677889999999999999999999764

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=9.8e-33  Score=291.41  Aligned_cols=253  Identities=27%  Similarity=0.369  Sum_probs=200.7

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecC
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSL  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~  604 (840)
                      +|...+.||+|++|.||+|... +|+.||+|++......       .....+.+.+|+++++++. |+||+++++++...
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~-------~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~   74 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLI-------KEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDE   74 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhcc-------chHHHHHHHHHHHHHHhcccCCCchhHHHHhcCC
Confidence            5777889999999999999654 7999999998442211       1233467889999999998 99999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+++|+||+|+||+++.++.++++|||++.
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~i~~ql~~~l~~Lh~---~~~~H~dl~~~ni~i~~~~~~~l~df~~~~  150 (280)
T cd05581          75 ENLYFVLEYAPNGELLQYIRKYG-SLDEKCTRFYAAEILLALEYLHS---KGIIHRDLKPENILLDKDMHIKITDFGTAK  150 (280)
T ss_pred             ceEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEecCCcccc
Confidence            99999999999999999998764 69999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCC-----------------CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCc
Q 003199          685 VLQARGGK-----------------DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK  747 (840)
Q Consensus       685 ~~~~~~~~-----------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~  747 (840)
                      ........                 ........++..|+|||...+..++.++||||||++++++++|+.||.....   
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~---  227 (280)
T cd05581         151 VLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE---  227 (280)
T ss_pred             ccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccH---
Confidence            66432110                 1222345678899999998888899999999999999999999999975320   


Q ss_pred             chhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH----HHHHHH
Q 003199          748 NIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM----NEVVQL  806 (840)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~----~evl~~  806 (840)
                       . ........        .....+..+   ...+.+++.+|++.+|.+||++    .+++++
T Consensus       228 -~-~~~~~~~~--------~~~~~~~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~  277 (280)
T cd05581         228 -Y-LTFQKILK--------LEYSFPPNF---PPDAKDLIEKLLVLDPQDRLGVNEGYDELKAH  277 (280)
T ss_pred             -H-HHHHHHHh--------cCCCCCCcc---CHHHHHHHHHHhcCCHhhCCCcccCHHHHhcC
Confidence             0 00000000        011111122   3456778889999999999999    887764

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=1.8e-32  Score=285.95  Aligned_cols=253  Identities=23%  Similarity=0.283  Sum_probs=193.1

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +|...+.||+|+||.||+|... .+..+++|.++.......     .......+..|+.+++.++||||+++++++.+..
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   75 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGEL-----NPNETVQANQEAQLLSKLDHPAIVKFHASFLERD   75 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEecccccccc-----CcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC
Confidence            3667789999999999998554 455677776643221110     1112334667899999999999999999999988


Q ss_pred             cceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          606 CNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ..++||||+++++|.+++..   ....+++..+..++.|++.|+.|||+   .+++|+||+|+||++++ +.++|+|||.
T Consensus        76 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~~l~~~nili~~-~~~~l~d~g~  151 (260)
T cd08222          76 AFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQ---RRILHRDLKAKNIFLKN-NLLKIGDFGV  151 (260)
T ss_pred             ceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHH---cCccccCCChhheEeec-CCEeecccCc
Confidence            99999999999999998864   23468999999999999999999999   99999999999999976 5699999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ++.....   ........|++.|+|||...+..++.++|+||||+++|+|++|..||....     .......       
T Consensus       152 ~~~~~~~---~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~-----~~~~~~~-------  216 (260)
T cd08222         152 SRLLMGS---CDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN-----FLSVVLR-------  216 (260)
T ss_pred             eeecCCC---cccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-----HHHHHHH-------
Confidence            8765432   122234567889999999888888999999999999999999999986421     1111110       


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         ......+.........+.+++.+|++.+|++||++.|++++
T Consensus       217 ---~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  257 (260)
T cd08222         217 ---IVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILRN  257 (260)
T ss_pred             ---HHcCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhhC
Confidence               11111111112334567788889999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=6.2e-33  Score=301.03  Aligned_cols=264  Identities=22%  Similarity=0.318  Sum_probs=190.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|...+.||.|+||.||+|.. .+|+.||+|.+.....          ...+.+.+|+++++.++||||+++++++...
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~----------~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~   74 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP----------QSVKHALREIKIIRRLDHDNIVKVYEVLGPS   74 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC----------chHHHHHHHHHHHHhcCCCcchhhHhhhccc
Confidence            4677888999999999999955 5789999998844331          2245678899999999999999999776543


Q ss_pred             --------------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc
Q 003199          605 --------------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD  670 (840)
Q Consensus       605 --------------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~  670 (840)
                                    ...++||||++ ++|.+++...  .+++..+..++.|++.||+|||+   .+++||||||+||+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~---~givH~dikp~Nili~  148 (342)
T cd07854          75 GSDLTEDVGSLTELNSVYIVQEYME-TDLANVLEQG--PLSEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANVFIN  148 (342)
T ss_pred             ccccccccccccccceEEEEeeccc-ccHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEc
Confidence                          35689999996 5898888654  58899999999999999999999   8999999999999998


Q ss_pred             C-CCCCeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          671 V-NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       671 ~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                      . ++.++++|||.++................++..|+|||.+.+ ..++.++|||||||++|||++|+.||.+...... 
T Consensus       149 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~-  227 (342)
T cd07854         149 TEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQ-  227 (342)
T ss_pred             CCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-
Confidence            4 557899999999765332111112233457889999997654 5678899999999999999999999975321000 


Q ss_pred             hhhhhhh-hhccc---c----chhhhcc--cccCC-C----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          749 IIYWVSI-KVDTK---E----GIMEVLD--KKLSG-S----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       749 ~~~~~~~-~~~~~---~----~~~~~~~--~~~~~-~----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....... .....   .    .......  ..... .    ......++.+++.+|++.||++|||+.|++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h  300 (342)
T cd07854         228 MQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMH  300 (342)
T ss_pred             HHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCC
Confidence            0000000 00000   0    0000000  00000 0    01123567788999999999999999999976

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.1e-32  Score=296.86  Aligned_cols=263  Identities=23%  Similarity=0.329  Sum_probs=194.8

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.++|+..+.||+|+||.||+|. ..+|..||||++.....        .....+.+.+|++++++++|+||+++++++
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   83 (343)
T cd07880          12 EVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQ--------SELFAKRAYRELRLLKHMKHENVIGLLDVF   83 (343)
T ss_pred             ccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEeccccc--------chHHHHHHHHHHHHHHhcCCCCccceeeee
Confidence            345678889999999999999995 55799999998843221        122345678999999999999999999988


Q ss_pred             ecCc------cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          602 SSLY------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       602 ~~~~------~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      ....      ..++||||+ +++|.+++...  .+++..+..++.|++.|++|||+   .+|+||||||+||+++.++.+
T Consensus        84 ~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~--~l~~~~~~~i~~qi~~al~~LH~---~gi~H~dlkp~Nill~~~~~~  157 (343)
T cd07880          84 TPDLSLDRFHDFYLVMPFM-GTDLGKLMKHE--KLSEDRIQFLVYQMLKGLKYIHA---AGIIHRDLKPGNLAVNEDCEL  157 (343)
T ss_pred             cCCccccccceEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCE
Confidence            6543      348999999 77998888653  68999999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +++|||++.....      ......+++.|+|||.+.+ ..++.++||||+|+++|++++|+.||...... ........
T Consensus       158 kl~dfg~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~-~~~~~~~~  230 (343)
T cd07880         158 KILDFGLARQTDS------EMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHL-DQLMEIMK  230 (343)
T ss_pred             EEeeccccccccc------CccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHH
Confidence            9999999876432      1223457889999998866 45889999999999999999999999753210 00000000


Q ss_pred             hhhccc---------cchhhh---cccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          755 IKVDTK---------EGIMEV---LDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       755 ~~~~~~---------~~~~~~---~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ......         ......   +.......+    ......+.+++.+|++.||++|||+.+++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~  298 (343)
T cd07880         231 VTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAH  298 (343)
T ss_pred             hcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000000         000000   000000001    1223457789999999999999999999965

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=4e-33  Score=311.44  Aligned_cols=257  Identities=24%  Similarity=0.290  Sum_probs=200.5

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|.++++||+|+||.|..++. .+++.||+|++.+...-       ......-|.+|-.+|..-..+=|++++-+|.+
T Consensus        74 ~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMl-------Kr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   74 AEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEML-------KRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHh-------hchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            56788899999999999999965 47899999998542211       01224568888889988888999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ..+.|+|||||+||+|-..+.+.. .+++.-++.+...|+-||.-+|+   .|+|||||||+|||+|..|++|++|||.+
T Consensus       147 ~~~LYlVMdY~pGGDlltLlSk~~-~~pE~~ArFY~aEiVlAldslH~---mgyVHRDiKPDNvLld~~GHikLADFGsC  222 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLSKFD-RLPEDWARFYTAEIVLALDSLHS---MGYVHRDIKPDNVLLDKSGHIKLADFGSC  222 (1317)
T ss_pred             ccceEEEEecccCchHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHh---ccceeccCCcceeEecccCcEeeccchhH
Confidence            999999999999999999999987 79999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccc----c-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAY----S-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      -.+..  .+.......+|||.|+|||++.    + +.|+...|.||+||++|||+.|..||..+     .++..+...+.
T Consensus       223 lkm~~--dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYad-----slveTY~KIm~  295 (1317)
T KOG0612|consen  223 LKMDA--DGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYAD-----SLVETYGKIMN  295 (1317)
T ss_pred             HhcCC--CCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHH-----HHHHHHHHHhc
Confidence            77754  2334556778999999999884    2 57899999999999999999999999753     22222222222


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC---HHHHHHHh
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT---MNEVVQLL  807 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps---~~evl~~L  807 (840)
                      ..+.+      .+++ ..+......+||.+.+. +|+.|..   +.++..|-
T Consensus       296 hk~~l------~FP~-~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~Hp  339 (1317)
T KOG0612|consen  296 HKESL------SFPD-ETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKNHP  339 (1317)
T ss_pred             hhhhc------CCCc-ccccCHHHHHHHHHHhc-ChhhhcccccHHHHHhCc
Confidence            21110      1121 11123334444445443 7888887   88888774

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.98  E-value=6.3e-32  Score=290.97  Aligned_cols=263  Identities=24%  Similarity=0.352  Sum_probs=194.9

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.++|+..+.||.|+||.||+|. ..+|+.||||++......        ....+.+.+|+++++.++|||++++.+++
T Consensus         7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~E~~~l~~l~hpniv~~~~~~   78 (328)
T cd07856           7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFST--------PVLAKRTYRELKLLKHLRHENIISLSDIF   78 (328)
T ss_pred             ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccc--------cchhHHHHHHHHHHHhcCCCCeeeEeeeE
Confidence            356778899999999999999995 447999999987433211        12245677899999999999999999988


Q ss_pred             ec-CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          602 SS-LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       602 ~~-~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      .. ....++|+||+ +++|.+++...  .+++..+..++.|+++||+|||+   .+++||||+|+||++++++.++|+||
T Consensus        79 ~~~~~~~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~~ql~~aL~~LH~---~~iiH~dl~p~Nili~~~~~~~l~df  152 (328)
T cd07856          79 ISPLEDIYFVTELL-GTDLHRLLTSR--PLEKQFIQYFLYQILRGLKYVHS---AGVVHRDLKPSNILINENCDLKICDF  152 (328)
T ss_pred             ecCCCcEEEEeehh-ccCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEeECCCCCEEeCcc
Confidence            65 55778999999 67898888754  57888899999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |.+.....      ......++..|+|||.+.+ ..++.++||||||+++|||++|+.||....... ....+.......
T Consensus       153 g~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~-~~~~~~~~~~~~  225 (328)
T cd07856         153 GLARIQDP------QMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVN-QFSIITDLLGTP  225 (328)
T ss_pred             ccccccCC------CcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCC
Confidence            99875422      1123457889999998765 568999999999999999999999996532100 000000000000


Q ss_pred             c---------cchhhhccc-ccCC--Cc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 K---------EGIMEVLDK-KLSG--SF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~---------~~~~~~~~~-~~~~--~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .         ....+.... ....  ..    ......+.+++.+|++.+|++||++.+++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         226 PDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             CHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0         000000000 0000  00    1123567788899999999999999999887

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.98  E-value=3.9e-32  Score=294.89  Aligned_cols=263  Identities=23%  Similarity=0.312  Sum_probs=196.0

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++.++|+..+.||+|++|.||+|... +++.||||++.....        .....+.+.+|+.+++.+.|+|++++.+++
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   83 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQ--------SAIHAKRTYRELRLLKHMDHENVIGLLDVF   83 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccc--------hhhHHHHHHHHHHHHHhccCCCHHHHHHHh
Confidence            34567888899999999999999665 688999998743221        122345677899999999999999999887


Q ss_pred             ecCcc------ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          602 SSLYC------NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       602 ~~~~~------~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      ...+.      .++|+||+ +++|.+++...  .+++..+..++.|++.|++|||+   .+|+||||||+||++++++.+
T Consensus        84 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nill~~~~~~  157 (343)
T cd07851          84 TPASSLEDFQDVYLVTHLM-GADLNNIVKCQ--KLSDDHIQFLVYQILRGLKYIHS---AGIIHRDLKPSNIAVNEDCEL  157 (343)
T ss_pred             hccccccccccEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCE
Confidence            65554      79999999 67999988764  68999999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +|+|||++.....      ......++..|+|||.+.+ ..++.++||||||+++|||++|+.||...... ..+.....
T Consensus       158 kL~dfg~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~-~~~~~i~~  230 (343)
T cd07851         158 KILDFGLARHTDD------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHI-DQLKRIMN  230 (343)
T ss_pred             EEccccccccccc------cccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHH
Confidence            9999999976532      1233467889999998765 36789999999999999999999999753211 00000000


Q ss_pred             hhhcc---------ccchhhh---cccccCCCcH----HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          755 IKVDT---------KEGIMEV---LDKKLSGSFR----DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       755 ~~~~~---------~~~~~~~---~~~~~~~~~~----~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .....         .......   ........+.    ....++.+++.+|++.||++|||+.+++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         231 LVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             hcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcC
Confidence            00000         0000000   0001111111    124578889999999999999999999876

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.97  E-value=1.8e-31  Score=288.60  Aligned_cols=265  Identities=24%  Similarity=0.307  Sum_probs=190.1

Q ss_pred             cCccCeeeccCCcEEEEEEeC-C--CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEec
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-S--GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSS  603 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~--~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  603 (840)
                      |+..+.||+|+||.||+|... +  +..||+|++.....        .....+.+.+|+++++++ .||||+++++++..
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   73 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFS--------KKILAKRALRELKLLRHFRGHKNITCLYDMDIV   73 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccc--------cchhHHHHHHHHHHHHHhcCCCChheeeeeeee
Confidence            667788999999999999654 4  78999998743211        112345677899999999 59999999987532


Q ss_pred             ----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          604 ----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       604 ----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                          ....++++||+. ++|.+++.... .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|
T Consensus        74 ~~~~~~~~~~~~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~givH~dlkp~Nili~~~~~~kl~D  148 (332)
T cd07857          74 FPGNFNELYLYEELME-ADLHQIIRSGQ-PLTDAHFQSFIYQILCGLKYIHS---ANVLHRDLKPGNLLVNADCELKICD  148 (332)
T ss_pred             ccccCCcEEEEEeccc-CCHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHeEEcCCCCEEeCc
Confidence                245678889885 68999887654 68999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCC-CcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchh-------
Q 003199          680 FGIAKVLQARGGK-DSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII-------  750 (840)
Q Consensus       680 fg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~-------  750 (840)
                      ||+++........ ........|+..|+|||+..+ ..++.++||||+|+++|+|++|+.||...... ....       
T Consensus       149 fg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~  227 (332)
T cd07857         149 FGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYV-DQLNQILQVLG  227 (332)
T ss_pred             CCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHH-HHHHHHHHHhC
Confidence            9999765432111 111233568999999998765 46899999999999999999999998753210 0000       


Q ss_pred             ----hh-hhhhhccccchhhhcccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          751 ----YW-VSIKVDTKEGIMEVLDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       751 ----~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                          .+ ......................+    ......+.+++.+|++.||++|||+.+++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~  292 (332)
T cd07857         228 TPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEH  292 (332)
T ss_pred             CCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                00 00000000000000000000001    1123567788999999999999999999876

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.97  E-value=1.2e-31  Score=313.06  Aligned_cols=148  Identities=29%  Similarity=0.357  Sum_probs=130.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|+||.||+|... +++.||||++.....       ........+..|+.+++.++|+||+++++++...
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~-------~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~   76 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADM-------INKNMVHQVQAERDALALSKSPFIVHLYYSLQSA   76 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhc-------cCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEEC
Confidence            56788899999999999999665 789999999854321       1123346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+.+++|.+++.... .+++..++.++.||+.||+|||.   .+||||||||+|||++.++.+||+|||+++
T Consensus        77 ~~~~lVmEy~~g~~L~~li~~~~-~l~~~~~~~i~~qil~aL~yLH~---~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          77 NNVYLVMEYLIGGDVKSLLHIYG-YFDEEMAVKYISEVALALDYLHR---HGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             CEEEEEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999999999999999997654 58899999999999999999999   899999999999999999999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-32  Score=291.24  Aligned_cols=243  Identities=23%  Similarity=0.259  Sum_probs=192.0

Q ss_pred             HHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      .+.|.....+|.|+|+.|-.+ ...+++..+||++....              .+-.+|+.++... .|||++++.+.+.
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~--------------~~~~~e~~~~~~~~~h~niv~~~~v~~  386 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA--------------DDNQDEIPISLLVRDHPNIVKSHDVYE  386 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc--------------cccccccchhhhhcCCCcceeecceec
Confidence            456666777999999999887 55678999999984441              1233567666666 6999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE-cCCCCCeeeccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL-DVNYQPKVADFG  681 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill-~~~~~~kl~Dfg  681 (840)
                      +..+.|+|||.+.++-+.+.+.... .+. .++.+|+.+|+.|+.|||+   +|||||||||+|||+ ++.++++|+|||
T Consensus       387 ~~~~~~~v~e~l~g~ell~ri~~~~-~~~-~e~~~w~~~lv~Av~~LH~---~gvvhRDLkp~NIL~~~~~g~lrltyFG  461 (612)
T KOG0603|consen  387 DGKEIYLVMELLDGGELLRRIRSKP-EFC-SEASQWAAELVSAVDYLHE---QGVVHRDLKPGNILLDGSAGHLRLTYFG  461 (612)
T ss_pred             CCceeeeeehhccccHHHHHHHhcc-hhH-HHHHHHHHHHHHHHHHHHh---cCeeecCCChhheeecCCCCcEEEEEec
Confidence            9999999999999998888877653 222 7888899999999999999   999999999999999 689999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      .++.....      ....+-|..|.|||++....+++++|+||||++||+|++|+.||....++   ...          
T Consensus       462 ~a~~~~~~------~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~---~ei----------  522 (612)
T KOG0603|consen  462 FWSELERS------CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG---IEI----------  522 (612)
T ss_pred             hhhhCchh------hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch---HHH----------
Confidence            99876442      33446688999999999999999999999999999999999999864332   000          


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                       ...+..+.......   ....+|+.+|++.||.+||+|.++..+=.-
T Consensus       523 -~~~i~~~~~s~~vS---~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~  566 (612)
T KOG0603|consen  523 -HTRIQMPKFSECVS---DEAKDLLQQLLQVDPALRLGADEIGAHPWF  566 (612)
T ss_pred             -HHhhcCCccccccC---HHHHHHHHHhccCChhhCcChhhhccCcch
Confidence             01111111222223   344556669999999999999999987555

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.3e-31  Score=275.78  Aligned_cols=242  Identities=30%  Similarity=0.383  Sum_probs=192.8

Q ss_pred             eeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       534 lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      ||+|+||.||++... +++.||+|++......       .......+..|+.++++++|+|++++++.+......++|||
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~-------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   73 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKII-------KRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLE   73 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhc-------chHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEe
Confidence            689999999999665 5899999988543211       12345678899999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCC
Q 003199          613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK  692 (840)
Q Consensus       613 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  692 (840)
                      |+++++|.+++.... .+++..+..++.|++.|+.|+|+   .+++|+||+|+||+++.++.++|+|||.+......   
T Consensus        74 ~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lh~---~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~---  146 (250)
T cd05123          74 YAPGGELFSHLSKEG-RFSEERARFYAAEIVLALEYLHS---LGIIYRDLKPENILLDADGHIKLTDFGLAKELSSE---  146 (250)
T ss_pred             cCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcceEEEcCCCcEEEeecCcceecccC---
Confidence            999999999998764 68999999999999999999999   99999999999999999999999999998765331   


Q ss_pred             CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccC
Q 003199          693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS  772 (840)
Q Consensus       693 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  772 (840)
                      ........++..|+|||...+...+.++|+||||+++||+++|+.||.....  ...   ......        .....+
T Consensus       147 ~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~--~~~---~~~~~~--------~~~~~~  213 (250)
T cd05123         147 GSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR--KEI---YEKILK--------DPLRFP  213 (250)
T ss_pred             CCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHH---HHHHhc--------CCCCCC
Confidence            1223455688899999999888889999999999999999999999964311  111   100000        001111


Q ss_pred             CCcHHHHHHHHHHHHHccCCCCCCCCCH---HHHHH
Q 003199          773 GSFRDEMIQVLRIAIRCTSKSPATRPTM---NEVVQ  805 (840)
Q Consensus       773 ~~~~~~~~~l~~l~~~cl~~dP~~Rps~---~evl~  805 (840)
                      ...   ...+.+++.+|+..||++||++   .++.+
T Consensus       214 ~~~---~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~  246 (250)
T cd05123         214 EFL---SPEARDLISGLLQKDPTKRLGSGGAEEIKA  246 (250)
T ss_pred             CCC---CHHHHHHHHHHhcCCHhhCCCcccHHHHHh
Confidence            111   3556778889999999999999   55554

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-32  Score=272.94  Aligned_cols=242  Identities=25%  Similarity=0.334  Sum_probs=190.6

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      ..+|..+.+||+|+||+|..|..+ +.+.+|||++++...-+..    +   .+--..|-++++.- +-|.+++++.+|+
T Consensus       348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdD----D---vectm~EKrvLAL~~kppFL~qlHScFQ  420 (683)
T KOG0696|consen  348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDD----D---VECTMVEKRVLALPGKPPFLVQLHSCFQ  420 (683)
T ss_pred             ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecC----c---ccceehhhhheecCCCCchHHHHHHHhh
Confidence            456788889999999999999666 5678999998654422111    1   12223466666655 5788999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ..+..|.||||+.||+|--++++.+ .+.++.+..+|..||-||-+||+   +||+.||||..|||+|.+|++||+|||+
T Consensus       421 TmDRLyFVMEyvnGGDLMyhiQQ~G-kFKEp~AvFYAaEiaigLFFLh~---kgIiYRDLKLDNvmLd~eGHiKi~DFGm  496 (683)
T KOG0696|consen  421 TMDRLYFVMEYVNGGDLMYHIQQVG-KFKEPVAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGM  496 (683)
T ss_pred             hhhheeeEEEEecCchhhhHHHHhc-ccCCchhhhhhHHHHHHhhhhhc---CCeeeeeccccceEeccCCceEeeeccc
Confidence            9999999999999999988887765 68899999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ++.--   -....+...+|||.|+|||++.-.+|+.++|.|||||+||||+.|++||+++.++  .+             
T Consensus       497 cKEni---~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~--el-------------  558 (683)
T KOG0696|consen  497 CKENI---FDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED--EL-------------  558 (683)
T ss_pred             ccccc---cCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHH--HH-------------
Confidence            87532   2345667899999999999999999999999999999999999999999874221  11             


Q ss_pred             hhhhcccc--cCCCcHHHHHHHHHHHHHccCCCCCCCC
Q 003199          763 IMEVLDKK--LSGSFRDEMIQVLRIAIRCTSKSPATRP  798 (840)
Q Consensus       763 ~~~~~~~~--~~~~~~~~~~~l~~l~~~cl~~dP~~Rp  798 (840)
                      ...+.+..  .+..   ...+...+....+.+.|.+|.
T Consensus       559 F~aI~ehnvsyPKs---lSkEAv~ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  559 FQAIMEHNVSYPKS---LSKEAVAICKGLLTKHPGKRL  593 (683)
T ss_pred             HHHHHHccCcCccc---ccHHHHHHHHHHhhcCCcccc
Confidence            11111111  1222   334445556688889999995

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.97  E-value=1.3e-31  Score=274.95  Aligned_cols=219  Identities=23%  Similarity=0.232  Sum_probs=172.7

Q ss_pred             cCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEeecC
Q 003199          537 GGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMP  615 (840)
Q Consensus       537 G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~  615 (840)
                      |.+|.||++. ..+|+.||+|++....               .+..|...+....|||++++++++.+.+..++||||++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~---------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   68 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS---------------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAE   68 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh---------------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCC
Confidence            8999999984 4578999999984321               12234444455579999999999999999999999999


Q ss_pred             CCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcc
Q 003199          616 NGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST  695 (840)
Q Consensus       616 ~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  695 (840)
                      +|+|.+++.+.. .+++..+..++.|++.||+|||+   ++++||||||+||+++.++.++++|||.+.....      .
T Consensus        69 ~~~L~~~l~~~~-~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~------~  138 (237)
T cd05576          69 GGKLWSHISKFL-NIPEECVKRWAAEMVVALDALHR---EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVED------S  138 (237)
T ss_pred             CCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCCCEEEecccchhcccc------c
Confidence            999999987654 58999999999999999999999   9999999999999999999999999998765532      1


Q ss_pred             eecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCc
Q 003199          696 TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSF  775 (840)
Q Consensus       696 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  775 (840)
                      .....++..|+|||...+..++.++||||+|+++|||++|+.|+......           .      .......++.. 
T Consensus       139 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~-----------~------~~~~~~~~~~~-  200 (237)
T cd05576         139 CDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSG-----------I------NTHTTLNIPEW-  200 (237)
T ss_pred             cccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh-----------c------ccccccCCccc-
Confidence            22334567899999998888899999999999999999999887532100           0      00000011122 


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCH
Q 003199          776 RDEMIQVLRIAIRCTSKSPATRPTM  800 (840)
Q Consensus       776 ~~~~~~l~~l~~~cl~~dP~~Rps~  800 (840)
                        ....+.+++.+|++.||++||++
T Consensus       201 --~~~~~~~li~~~l~~dp~~R~~~  223 (237)
T cd05576         201 --VSEEARSLLQQLLQFNPTERLGA  223 (237)
T ss_pred             --CCHHHHHHHHHHccCCHHHhcCC
Confidence              22456678889999999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-32  Score=281.65  Aligned_cols=254  Identities=25%  Similarity=0.314  Sum_probs=204.8

Q ss_pred             cCccCeeeccCCcEEEEEEeCCCc-EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNSGE-VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~~~-~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      +....-||-|+||.|=.+..+... .+|+|++++....       +.+..+.+..|-.+|..++.|.||++|..|.+...
T Consensus       422 l~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIV-------dtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~ky  494 (732)
T KOG0614|consen  422 LKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIV-------DTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKY  494 (732)
T ss_pred             hhhhhhcccCccceEEEEEecccchHHHHHHHhHhhcc-------chhHHHHHHhHHHHHHhcCchHHHHHHHHhccchh
Confidence            334456899999999998776433 3899988655432       23345677889999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .|+.||-|-||.++..++..+ .++..++..++..+++|++|||+   ++||+|||||+|.++|.+|-+||.|||.|+.+
T Consensus       495 vYmLmEaClGGElWTiLrdRg-~Fdd~tarF~~acv~EAfeYLH~---k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki  570 (732)
T KOG0614|consen  495 VYMLMEACLGGELWTILRDRG-SFDDYTARFYVACVLEAFEYLHR---KGIIYRDLKPENLLLDNRGYLKLVDFGFAKKI  570 (732)
T ss_pred             hhhhHHhhcCchhhhhhhhcC-CcccchhhhhHHHHHHHHHHHHh---cCceeccCChhheeeccCCceEEeehhhHHHh
Confidence            999999999999999999876 79999999999999999999999   99999999999999999999999999999998


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      .    ....+.+++|||.|.|||++.+...+.++|.||+|+++||+++|.+||.+...-     .........       
T Consensus       571 ~----~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpm-----ktYn~ILkG-------  634 (732)
T KOG0614|consen  571 G----SGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPM-----KTYNLILKG-------  634 (732)
T ss_pred             c----cCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchH-----HHHHHHHhh-------
Confidence            4    456678899999999999999999999999999999999999999999864211     111111111       


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHHhhhc
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQLLAEA  810 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~L~~~  810 (840)
                      +|..  ..+........+++.+.+..+|.+|.-     +.+|.+|-+-.
T Consensus       635 id~i--~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~  681 (732)
T KOG0614|consen  635 IDKI--EFPRRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKHRWFE  681 (732)
T ss_pred             hhhh--hcccccchhHHHHHHHHHhcCcHhhhccccCChHHHHhhhhhh
Confidence            1110  011222344566777888999999985     88998886643

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=7.4e-32  Score=240.24  Aligned_cols=263  Identities=23%  Similarity=0.319  Sum_probs=195.5

Q ss_pred             cCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |...++||+|.||+|++|+ +.+++.||+|+.+.....        ...-....+|+-+++.++|.|||++++....+..
T Consensus         4 ydkmekigegtygtvfkarn~~t~eivalkrvrldddd--------egvpssalreicllkelkhknivrl~dvlhsdkk   75 (292)
T KOG0662|consen    4 YDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDD--------EGVPSSALREICLLKELKHKNIVRLHDVLHSDKK   75 (292)
T ss_pred             hHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCC--------CCCcHHHHHHHHHHHHhhhcceeehhhhhccCce
Confidence            4455689999999999995 457899999998544322        2223456789999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .-+|+||| .-+|..+...-...++.+.++.++.|+.+|+.++|+   +++.|||+||.|.+++.+|+.|++|||+|+-+
T Consensus        76 ltlvfe~c-dqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchs---hnvlhrdlkpqnllin~ngelkladfglaraf  151 (292)
T KOG0662|consen   76 LTLVFEFC-DQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHS---HNVLHRDLKPQNLLINRNGELKLADFGLARAF  151 (292)
T ss_pred             eEEeHHHh-hHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhh---hhhhhccCCcceEEeccCCcEEecccchhhhc
Confidence            99999999 458888887766678999999999999999999999   99999999999999999999999999999887


Q ss_pred             hccCCCCcceecccccccccCccccccCC-CCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhh-hhhccccc-
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVS-IKVDTKEG-  762 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~-~~~~~~~~-  762 (840)
                      .-   .-...+...-|..|.+|.++.+.. |+...|+||.|||+.|+.. |++-|.+..- ..++..... .....++. 
T Consensus       152 gi---pvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dv-ddqlkrif~~lg~p~ed~w  227 (292)
T KOG0662|consen  152 GI---PVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV-DDQLKRIFRLLGTPTEDQW  227 (292)
T ss_pred             CC---ceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcH-HHHHHHHHHHhCCCccccC
Confidence            42   233455667889999999998765 7889999999999999998 6666655321 111111111 11111111 


Q ss_pred             --hhhhcccccCCCc------HHHHHH----HHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 --IMEVLDKKLSGSF------RDEMIQ----VLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 --~~~~~~~~~~~~~------~~~~~~----l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        +...-|-+..+.+      ...+.+    =.++....+.-+|..|.++++++++
T Consensus       228 ps~t~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalqh  283 (292)
T KOG0662|consen  228 PSMTKLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQH  283 (292)
T ss_pred             CccccCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcC
Confidence              1112222222222      122222    2345556677799999999998875

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-31  Score=268.15  Aligned_cols=268  Identities=27%  Similarity=0.361  Sum_probs=198.0

Q ss_pred             HHHHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.++|-.++.||+|+|+.||+| +....+.||||+-...+.   ..++......+...+|..+-+.+.||.||++++|+
T Consensus       460 tLn~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~---WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyf  536 (775)
T KOG1151|consen  460 TLNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKN---WRDEKKENYHKHACREYRIHKELDHPRIVKLYDYF  536 (775)
T ss_pred             chHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccc---hhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeee
Confidence            45567778889999999999998 677789999997643321   12223333456778899999999999999999999


Q ss_pred             e-cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---CCCCee
Q 003199          602 S-SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---NYQPKV  677 (840)
Q Consensus       602 ~-~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl  677 (840)
                      . +.+.++-|+|||+|.+|.-++.... ..++.+++.|+.||+.||.||.+. ..+|+|-||||.|||+..   -|.+||
T Consensus       537 slDtdsFCTVLEYceGNDLDFYLKQhk-lmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKI  614 (775)
T KOG1151|consen  537 SLDTDSFCTVLEYCEGNDLDFYLKQHK-LMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKI  614 (775)
T ss_pred             eeccccceeeeeecCCCchhHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEe
Confidence            5 4566788999999999999998775 689999999999999999999974 378999999999999954   467999


Q ss_pred             ecccchhhhhccCCCC----cceecccccccccCcccccc----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcch
Q 003199          678 ADFGIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYS----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI  749 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~  749 (840)
                      +|||+++++.+.....    ..+....||..|++||.+.-    ...+.|+||||+|||+|.++.|+.||........ +
T Consensus       615 TDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQd-I  693 (775)
T KOG1151|consen  615 TDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQD-I  693 (775)
T ss_pred             eecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHH-H
Confidence            9999999986543221    23356789999999997642    3578899999999999999999999965321110 1


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ  805 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~  805 (840)
                      +        ...++...-.-.++... ....+...++.+|++..-+.|....++..
T Consensus       694 L--------qeNTIlkAtEVqFP~KP-vVsseAkaFIRRCLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  694 L--------QENTILKATEVQFPPKP-VVSSEAKAFIRRCLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             H--------hhhchhcceeccCCCCC-ccCHHHHHHHHHHHHhhhhhhhhHHHHcc
Confidence            0        11111111111111111 12233445666999999888887776654

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=8.9e-33  Score=259.30  Aligned_cols=268  Identities=23%  Similarity=0.344  Sum_probs=194.4

Q ss_pred             HhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec-
Q 003199          526 EAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS-  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-  603 (840)
                      ..|....+||+|.||.||+|+ .++|+.||+|+..-...+.        ..-..-.+|+.++..++|+|++.++..|.. 
T Consensus        17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKe--------GfpitalreikiL~~lkHenv~nliEic~tk   88 (376)
T KOG0669|consen   17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKE--------GFPITALREIKILQLLKHENVVNLIEICRTK   88 (376)
T ss_pred             hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhcccc--------CCcHHHHHHHHHHHHhcchhHHHHHHHHhhc
Confidence            345556689999999999994 4578889998764332221        112345679999999999999999988743 


Q ss_pred             -------CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCe
Q 003199          604 -------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPK  676 (840)
Q Consensus       604 -------~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~k  676 (840)
                             ....|+||.+|+. +|.-.+......++..++.+++.++..||.|+|.   ..|+|||+||.|||++.++.+|
T Consensus        89 ~Tp~~r~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr---~kilHRDmKaaNvLIt~dgilk  164 (376)
T KOG0669|consen   89 ATPTNRDRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHR---NKILHRDMKAANVLITKDGILK  164 (376)
T ss_pred             cCCcccccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHH---hhHHhhcccHhhEEEcCCceEE
Confidence                   2346899999964 8888888777789999999999999999999999   8999999999999999999999


Q ss_pred             eecccchhhhhccC-CCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCC--------
Q 003199          677 VADFGIAKVLQARG-GKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDN--------  746 (840)
Q Consensus       677 l~Dfg~a~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--------  746 (840)
                      |+|||+|+.+..+. ......+..+-|..|.+||.+.+ +.|+++.|||+.|||+.||.||.+-+++..+..        
T Consensus       165 lADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~L  244 (376)
T KOG0669|consen  165 LADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQL  244 (376)
T ss_pred             eeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHH
Confidence            99999998775432 22223455667899999998876 468999999999999999999998887643211        


Q ss_pred             ------------cchhhhhhhhhc-cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          747 ------------KNIIYWVSIKVD-TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       747 ------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                                  ..+..|...... -.+.....+.....+...  ..+..+|+-.++..||.+|+.+.+++.+.
T Consensus       245 cGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~k--d~~a~dLle~ll~~DP~kR~~ad~alnh~  316 (376)
T KOG0669|consen  245 CGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVK--DDEALDLLEKLLKLDPTKRIDADQALNHD  316 (376)
T ss_pred             hccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccC--ChhHHHHHHHHhccCcccCcchHhhhchh
Confidence                        111111111111 000000111111111000  12455677789999999999999998874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.5e-33  Score=307.40  Aligned_cols=386  Identities=28%  Similarity=0.388  Sum_probs=222.1

Q ss_pred             CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCC
Q 003199           13 FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVT   92 (840)
Q Consensus        13 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   92 (840)
                      ..+.-+|+.||||+|++. ..|..+..+.+|+.|++++|   .|..+| ....++.+|++|.|.+|.+. ..|..+..+.
T Consensus        41 ~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n---~i~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lk  114 (1081)
T KOG0618|consen   41 VEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN---YIRSVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELK  114 (1081)
T ss_pred             hhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh---hHhhCc-hhhhhhhcchhheeccchhh-cCchhHHhhh
Confidence            344455999999999998 89999999999999999999   777777 56889999999999999987 7899999999


Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeeecccCcc------------------ccccCCcccCCCCCCCeeeccCCccc
Q 003199           93 SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ------------------LAGTIPEELGNLTELTDLDMSVNHLS  154 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~------------------~~~~~p~~l~~l~~L~~L~L~~n~l~  154 (840)
                      +|++|++++|++. ..|..+..+..+..+..++|..                  +.+.++..+..++.  .|+|++|.+.
T Consensus       115 nl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~  191 (1081)
T KOG0618|consen  115 NLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME  191 (1081)
T ss_pred             cccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence            9999999999999 7888888777777777777721                  22233333333333  4777777776


Q ss_pred             ccCCccccCCCCCcEEEeeccccccccc------------------hhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcc
Q 003199          155 GKIPESILRLPKLRVLQLYNNSLSGEIS------------------SVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLV  216 (840)
Q Consensus       155 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~  216 (840)
                      ..   .+..+.+|+.|....|++....-                  ..-.-..+|+++++++|+++ .+|.++..+.+|+
T Consensus       192 ~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle  267 (1081)
T KOG0618|consen  192 VL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLE  267 (1081)
T ss_pred             hh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccce
Confidence            21   23333444444444443331110                  01111245666666666666 3446666666666


Q ss_pred             eeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccC-CC-cccEEeccC
Q 003199          217 VLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LP-HVSIIDLSY  294 (840)
Q Consensus       217 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~-~L~~L~L~~  294 (840)
                      .|+..+|+++ .+|..+....+|++|....|.+. -+|....+++.|++|+|..|+|. ..|+.+.. +. .|..|..+.
T Consensus       268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~  344 (1081)
T KOG0618|consen  268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS  344 (1081)
T ss_pred             EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence            6666666663 45555555666666666666665 34445556666777777777665 44432221 11 122222222


Q ss_pred             CcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcc
Q 003199          295 NSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP  374 (840)
Q Consensus       295 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~  374 (840)
                      |++.......=..++.|+.|++.+|.+++..-+.+.++..|+.|+|++|+|.......+.++..|+.|+||+|+|+ .+|
T Consensus       345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp  423 (1081)
T KOG0618|consen  345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLP  423 (1081)
T ss_pred             ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhh
Confidence            2222111111112233444455555554444444444445555555555554222223444455555555555554 344


Q ss_pred             hhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCCCCc
Q 003199          375 NSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLS  417 (840)
Q Consensus       375 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~  417 (840)
                      ..+..+..|++|...+|+|. ..| .+..+ .++.+|+|.|+|+
T Consensus       424 ~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  424 DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            44444444444444444444 334 22222 3344444444444

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3.7e-31  Score=245.08  Aligned_cols=255  Identities=20%  Similarity=0.296  Sum_probs=194.1

Q ss_pred             HhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~  603 (840)
                      ++|+..+++|+|.+++|+.|. ..+.++++||+++.             ...+.+.+|+.++..++ ||||+++++...+
T Consensus        38 ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP-------------VkkkKIkREikIL~nL~gg~NIi~L~DiV~D  104 (338)
T KOG0668|consen   38 DDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP-------------VKKKKIKREIKILQNLRGGPNIIKLLDIVKD  104 (338)
T ss_pred             chHHHHHHHcCccHhhHhcccccCCCceEEEeeech-------------HHHHHHHHHHHHHHhccCCCCeeehhhhhcC
Confidence            456677889999999999994 45789999999843             33577999999999997 9999999999876


Q ss_pred             C--ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC-CCCeeecc
Q 003199          604 L--YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADF  680 (840)
Q Consensus       604 ~--~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl~Df  680 (840)
                      +  ....+|+||+++.+....-.    .++..++..++.++++||.|+|+   +||+|||+||.|||+|.. -..+++|+
T Consensus       105 p~SktpaLiFE~v~n~Dfk~ly~----tl~d~dIryY~~elLkALdyCHS---~GImHRDVKPhNvmIdh~~rkLrlIDW  177 (338)
T KOG0668|consen  105 PESKTPSLIFEYVNNTDFKQLYP----TLTDYDIRYYIYELLKALDYCHS---MGIMHRDVKPHNVMIDHELRKLRLIDW  177 (338)
T ss_pred             ccccCchhHhhhhccccHHHHhh----hhchhhHHHHHHHHHHHHhHHHh---cCcccccCCcceeeechhhceeeeeec
Confidence            4  45579999999988776554    46778899999999999999999   999999999999999964 57899999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+|.++.+    .........+..|--||.+..- .|+..-|+|||||++..|+..+.||-...+...+++...+..  .
T Consensus       178 GLAEFYHp----~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVL--G  251 (338)
T KOG0668|consen  178 GLAEFYHP----GKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVL--G  251 (338)
T ss_pred             chHhhcCC----CceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHh--C
Confidence            99999865    2334556677889999998764 578999999999999999999999965443333333322211  0


Q ss_pred             ccchhh-------hccccc--------CCCcH--------H-HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIME-------VLDKKL--------SGSFR--------D-EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~-------~~~~~~--------~~~~~--------~-~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+....       .+++..        +..+.        . ...+.++++-..+..|-.+|||++|++.|
T Consensus       252 t~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~H  322 (338)
T KOG0668|consen  252 TDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAH  322 (338)
T ss_pred             hHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcC
Confidence            000110       111111        11111        1 12566777779999999999999999876

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-31  Score=291.64  Aligned_cols=244  Identities=28%  Similarity=0.406  Sum_probs=188.4

Q ss_pred             ccCeeeccCCcE-EEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccc
Q 003199          530 EKNKVGQGGSGT-VYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       530 ~~~~lg~G~~g~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  607 (840)
                      ..+++|.|+.|+ ||+|.+. |+.||||++..             ...+-..+|+..++.- .|||||++++.-.+....
T Consensus       513 ~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~-------------e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~  578 (903)
T KOG1027|consen  513 PKEILGYGSNGTVVFRGVYE-GREVAVKRLLE-------------EFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFL  578 (903)
T ss_pred             cHHHcccCCCCcEEEEEeeC-CceehHHHHhh-------------HhHHHHHHHHHHHHhccCCCceEEEEeeccCCceE
Confidence            345789999986 6899887 89999999832             2345567899999988 599999999999999999


Q ss_pred             eEEEeecCCCChHHHhhcC--CC-CCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---C--CCCeeec
Q 003199          608 LLVYEYMPNGNLWDALHKG--LV-HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---N--YQPKVAD  679 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~--~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~--~~~kl~D  679 (840)
                      |+..|.| ..+|.+++...  .. ...-...+.+..|+++||+|||+   -+||||||||.||||+.   +  ..++|+|
T Consensus       579 YIalELC-~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs---l~iVHRDLkPQNILI~~~~~~~~~ra~iSD  654 (903)
T KOG1027|consen  579 YIALELC-ACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS---LKIVHRDLKPQNILISVPSADGTLRAKISD  654 (903)
T ss_pred             EEEehHh-hhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh---cccccccCCCceEEEEccCCCcceeEEecc
Confidence            9999999 67999999873  11 11114557788999999999999   89999999999999975   3  4689999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      ||+++.+......-.......||-+|+|||++....-+.++||||+||++|+.++ |.+||.+......++...      
T Consensus       655 fglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~------  728 (903)
T KOG1027|consen  655 FGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTG------  728 (903)
T ss_pred             cccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhcC------
Confidence            9999988543222233466789999999999999888889999999999999999 599998753332222211      


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                          ...+.  .+.+.. +.  ...+|+.+|+.+||..||++.+|+.|
T Consensus       729 ----~~~L~--~L~~~~-d~--eA~dLI~~ml~~dP~~RPsa~~VL~H  767 (903)
T KOG1027|consen  729 ----NYTLV--HLEPLP-DC--EAKDLISRMLNPDPQLRPSATDVLNH  767 (903)
T ss_pred             ----cccee--eeccCc-hH--HHHHHHHHhcCCCcccCCCHHHHhCC
Confidence                00110  011111 11  55678889999999999999999987

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-31  Score=265.64  Aligned_cols=261  Identities=23%  Similarity=0.297  Sum_probs=198.6

Q ss_pred             HHHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-C-C----Ccce
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-H-K----NIVK  596 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h-~----niv~  596 (840)
                      +..+|.++..+|+|.||.|.++ +...+..||||+++.-.           +..+...-|++++.++. + |    -+|+
T Consensus        87 l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~-----------kYreAa~iEi~vLqki~~~DP~g~~rcv~  155 (415)
T KOG0671|consen   87 LTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVD-----------KYREAALIEIEVLQKINESDPNGKFRCVQ  155 (415)
T ss_pred             cccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHH-----------HHhhHHHHHHHHHHHHHhcCCCCceEEEe
Confidence            4678899999999999999997 55568999999984332           23455667999999994 2 2    2788


Q ss_pred             eeeEEecCccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC----
Q 003199          597 LYCYFSSLYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV----  671 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~----  671 (840)
                      +.+||+-..+.++|+|.+ |-|+++++..+ ...++...++.++.|+++++++||+   .+++|-||||+||++.+    
T Consensus       156 m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~---~kl~HTDLKPENILfvss~~~  231 (415)
T KOG0671|consen  156 MRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHD---LKLTHTDLKPENILFVSSEYF  231 (415)
T ss_pred             eehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHh---cceeecCCChheEEEeccceE
Confidence            889999999999999999 77999999885 4679999999999999999999999   99999999999999842    


Q ss_pred             ----------------CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhC
Q 003199          672 ----------------NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITG  735 (840)
Q Consensus       672 ----------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg  735 (840)
                                      +..++|+|||.|+.-..      .....+.|..|.|||++.+-.++..+||||+||||+|+.||
T Consensus       232 ~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e------~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG  305 (415)
T KOG0671|consen  232 KTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHE------HHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTG  305 (415)
T ss_pred             EEeccCCccceeccCCCcceEEEecCCcceecc------CcceeeeccccCCchheeccCcCCccCceeeeeEEEEeecc
Confidence                            23489999999986432      22556789999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcchhhhhhhhhccccch--------------------------hhhccccc-----CCCcHHHHHHHHH
Q 003199          736 RKPVEDDFGDNKNIIYWVSIKVDTKEGI--------------------------MEVLDKKL-----SGSFRDEMIQVLR  784 (840)
Q Consensus       736 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~-----~~~~~~~~~~l~~  784 (840)
                      ..-|+...+ .+.+.....+..+....+                          ..+.+.-.     ...-..+..++++
T Consensus       306 ~~LFqtHen-~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfD  384 (415)
T KOG0671|consen  306 ETLFQTHEN-LEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFD  384 (415)
T ss_pred             ceecccCCc-HHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHH
Confidence            998876431 111111111000000000                          00000000     0011245678999


Q ss_pred             HHHHccCCCCCCCCCHHHHHHH
Q 003199          785 IAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       785 l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      |+..|+..||.+|+|+.|++.+
T Consensus       385 Ll~~mL~fDP~~RiTl~EAL~H  406 (415)
T KOG0671|consen  385 LLRRMLEFDPARRITLREALSH  406 (415)
T ss_pred             HHHHHHccCccccccHHHHhcC
Confidence            9999999999999999999876

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.97  E-value=1.4e-30  Score=295.88  Aligned_cols=257  Identities=18%  Similarity=0.176  Sum_probs=167.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-C----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-S----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      .++|...+.||+|+||.||+|... +    +..||||++.....            .+....|  .+....+.+++.++.
T Consensus       131 ~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~------------~e~~~~e--~l~~~~~~~~~~~~~  196 (566)
T PLN03225        131 KDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA------------VEIWMNE--RVRRACPNSCADFVY  196 (566)
T ss_pred             cCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch------------hHHHHHH--HHHhhchhhHHHHHH
Confidence            457888999999999999999665 4    68999998743210            0001111  111112222222221


Q ss_pred             E------EecCccceEEEeecCCCChHHHhhcCCCC-------------------CChHHHHHHHHHHHHHHHHHhhcCC
Q 003199          600 Y------FSSLYCNLLVYEYMPNGNLWDALHKGLVH-------------------LDWPTRHKIAFGVAQGLAYLHHGLL  654 (840)
Q Consensus       600 ~------~~~~~~~~lV~e~~~~gsL~~~l~~~~~~-------------------~~~~~~~~i~~~i~~~l~~LH~~~~  654 (840)
                      .      +......++||||+++++|.+++......                   ..+..+..++.|++.||+|||+   
T Consensus       197 ~~~~~~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~---  273 (566)
T PLN03225        197 GFLEPVSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS---  273 (566)
T ss_pred             hhhcccccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH---
Confidence            1      24566789999999999999988754211                   1123456799999999999999   


Q ss_pred             CCeEecCCCCCCEEEcC-CCCCeeecccchhhhhccCCCCcceecccccccccCccccccC-------------------
Q 003199          655 SPIIHRDIKSTNILLDV-NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-------------------  714 (840)
Q Consensus       655 ~~ivH~Dlk~~Nill~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-------------------  714 (840)
                      ++|+||||||+|||+++ ++.+||+|||+|+.+..  +.........+|+.|+|||.+...                   
T Consensus       274 ~gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~--~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l  351 (566)
T PLN03225        274 TGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRV--GINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVL  351 (566)
T ss_pred             CCEEeCcCCHHHEEEeCCCCcEEEEeCCCcccccc--ccccCCcccccCCCccChHHhhccCCCCCCccccccccccchh
Confidence            99999999999999986 57899999999976533  222333456789999999965322                   


Q ss_pred             ---CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc---cchhhhcccccCCCcH-------HHHHH
Q 003199          715 ---KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK---EGIMEVLDKKLSGSFR-------DEMIQ  781 (840)
Q Consensus       715 ---~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~  781 (840)
                         .++.++|||||||++|||+++..|+...      ............   ..+.............       .....
T Consensus       352 ~~~~~~~k~DVwSlGviL~el~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  425 (566)
T PLN03225        352 WQLNLPDRFDIYSAGLIFLQMAFPNLRSDSN------LIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGA  425 (566)
T ss_pred             ccccCCCCcccHHHHHHHHHHHhCcCCCchH------HHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchH
Confidence               2345679999999999999987665421      111110000000   0001111111111100       01223


Q ss_pred             HHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          782 VLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       782 l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..+++.+|++.||++|||++|+++|
T Consensus       426 ~~dLi~~mL~~dP~kR~ta~e~L~H  450 (566)
T PLN03225        426 GWELLKSMMRFKGRQRISAKAALAH  450 (566)
T ss_pred             HHHHHHHHccCCcccCCCHHHHhCC
Confidence            4578899999999999999999987

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.97  E-value=8e-31  Score=239.39  Aligned_cols=196  Identities=29%  Similarity=0.384  Sum_probs=162.5

Q ss_pred             ccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccc
Q 003199          530 EKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  607 (840)
                      ....||+|++|.|-+.++ .+|+..|||++...-.         .+..+...+|+.+..+. .+|.+|.++|.+.+....
T Consensus        50 ~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn---------~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdv  120 (282)
T KOG0984|consen   50 GIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN---------SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDV  120 (282)
T ss_pred             hhhhhcCCccchhhheeeccCCeEEEEeeehhhcC---------hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccE
Confidence            455799999999988744 5799999999844321         24456778888886665 799999999999999999


Q ss_pred             eEEEeecCCCChHHHhh---cCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          608 LLVYEYMPNGNLWDALH---KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ++.||.| ..||..+-.   +.+...++...-+||..+++||.|||+.  ..++|||+||+|||++.+|++|+||||.+.
T Consensus       121 wIcME~M-~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKiCDFGIsG  197 (282)
T KOG0984|consen  121 WICMELM-DTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKICDFGISG  197 (282)
T ss_pred             EEeHHHh-hhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEEcccccce
Confidence            9999999 457655433   2345789999999999999999999995  679999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCcccccc----CCCCccccchhHHHHHHHHHhCCCCCCC
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS----SKATTKCDVYSFGVVLMELITGRKPVED  741 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~slG~il~el~tg~~p~~~  741 (840)
                      ++.+    +...+...|-..|||||.+..    ..|+-||||||+|+.+.||.+++.||+.
T Consensus       198 ~L~d----SiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~  254 (282)
T KOG0984|consen  198 YLVD----SIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYES  254 (282)
T ss_pred             eehh----hhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccc
Confidence            7743    334445678889999998853    3789999999999999999999999975

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-30  Score=281.96  Aligned_cols=247  Identities=24%  Similarity=0.345  Sum_probs=198.2

Q ss_pred             hcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe--
Q 003199          527 AMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS--  602 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~--  602 (840)
                      .|++.+.||.|.+|.||++. .++|+.+|||+.....           ...+++..|+++++.. .|||++.++|++.  
T Consensus        20 ~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~-----------d~deEiE~eynil~~~~~hpnv~~fyg~~~k~   88 (953)
T KOG0587|consen   20 IFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE-----------DEEEEIELEYNMLKKYSHHPNVATFYGAFIKK   88 (953)
T ss_pred             ccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc-----------cccHHHHHHHHHHHhccCCCCcceEEEEEEEe
Confidence            45667789999999999994 4578999999873322           2245677899999888 5999999999984  


Q ss_pred             ---cCccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          603 ---SLYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       603 ---~~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                         .++..|||||||.+||..+.+..- ...+.|+.+..|++.++.|+.+||.   ..++|||+|-.|||++.++.+|++
T Consensus        89 ~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~---nkviHRDikG~NiLLT~e~~VKLv  165 (953)
T KOG0587|consen   89 DPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHN---NKVIHRDIKGQNVLLTENAEVKLV  165 (953)
T ss_pred             cCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhh---cceeeecccCceEEEeccCcEEEe
Confidence               367889999999999999988754 3578999999999999999999999   899999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCcccccc-----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      |||.+..+..   ......+..||+.|||||++..     ..|+.++|+||+|++..||.-|.+|+.+.....+      
T Consensus       166 DFGvSaQlds---T~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmra------  236 (953)
T KOG0587|consen  166 DFGVSAQLDS---TVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRA------  236 (953)
T ss_pred             eeeeeeeeec---ccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhh------
Confidence            9999977642   3345567889999999999843     3578899999999999999999999876421100      


Q ss_pred             hhhhccccchhhhcccccCC---CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          754 SIKVDTKEGIMEVLDKKLSG---SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                                .-.+....++   .......++.+.+..|+.+|-++||++.+++++
T Consensus       237 ----------LF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~h  282 (953)
T KOG0587|consen  237 ----------LFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLKH  282 (953)
T ss_pred             ----------hccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhccC
Confidence                      0011112222   224456778889999999999999999988765

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.97  E-value=8.2e-30  Score=281.59  Aligned_cols=268  Identities=23%  Similarity=0.257  Sum_probs=180.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-----------------CCCcEEEEEEecccccccccCchh----hHHHHHHHHHHH
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-----------------NSGEVVAVKKLWSQRTKVSASDTD----QLQLDKGLKTEV  583 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~----~~~~~~~~~~E~  583 (840)
                      .++|...++||+|+||+||+|..                 ..++.||||++.............    .....+....|+
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            45788899999999999999853                 235689999985432110000000    001123345577


Q ss_pred             HHHhccCCCCc-----ceeeeEEec--------CccceEEEeecCCCChHHHhhcCC-----------------------
Q 003199          584 ETLGNIRHKNI-----VKLYCYFSS--------LYCNLLVYEYMPNGNLWDALHKGL-----------------------  627 (840)
Q Consensus       584 ~~l~~l~h~ni-----v~l~~~~~~--------~~~~~lV~e~~~~gsL~~~l~~~~-----------------------  627 (840)
                      .++.+++|.++     ++++++|..        ....++||||+++++|.++++...                       
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence            78888876654     677777743        346799999999999999886421                       


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccC
Q 003199          628 VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA  707 (840)
Q Consensus       628 ~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~a  707 (840)
                      ..++|..+..++.|++.||+|+|+   .+|+||||||+||+++.++.+||+|||++.....  +.........+|+.|+|
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH~---~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~--~~~~~~~~g~~tp~Y~a  378 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLHR---IGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCT--GINFNPLYGMLDPRYSP  378 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCchHhEEECCCCcEEEEeCcCcccccc--CCccCccccCCCcceeC
Confidence            134678899999999999999999   8999999999999999999999999999976532  11112223345789999


Q ss_pred             ccccccCCC----------------------CccccchhHHHHHHHHHhCCC-CCCCCCCCC-------cchhhhhhhhh
Q 003199          708 PEYAYSSKA----------------------TTKCDVYSFGVVLMELITGRK-PVEDDFGDN-------KNIIYWVSIKV  757 (840)
Q Consensus       708 PE~~~~~~~----------------------~~~~Dv~slG~il~el~tg~~-p~~~~~~~~-------~~~~~~~~~~~  757 (840)
                      ||.+.....                      ..+.||||+||++|||++|.. |+.......       .....|.....
T Consensus       379 PE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~  458 (507)
T PLN03224        379 PEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKG  458 (507)
T ss_pred             hhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcc
Confidence            998754321                      234799999999999999875 664321100       11111111100


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCC---CCCCCHHHHHHHh
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSP---ATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP---~~Rps~~evl~~L  807 (840)
                      .       ..+  +. .+........+++.+++..+|   .+|+|++|+++|-
T Consensus       459 ~-------~~~--~~-~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp  501 (507)
T PLN03224        459 Q-------KYD--FS-LLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSHR  501 (507)
T ss_pred             c-------CCC--cc-cccccChHHHHHHHHHhccCCCCcccCCCHHHHhCCC
Confidence            0       000  00 112233556778888998765   7899999999873

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.96  E-value=1.3e-29  Score=261.25  Aligned_cols=240  Identities=32%  Similarity=0.423  Sum_probs=190.6

Q ss_pred             CCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEeecCC
Q 003199          538 GSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPN  616 (840)
Q Consensus       538 ~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~  616 (840)
                      +||.||+|... +|+.||+|++......         ...+.+.+|++.+++++|+|++++++++......++|+||+++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~---------~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~   71 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIK---------KKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDG   71 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccc---------cHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCC
Confidence            58999999776 5899999998543321         1157889999999999999999999999998999999999999


Q ss_pred             CChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcce
Q 003199          617 GNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT  696 (840)
Q Consensus       617 gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  696 (840)
                      ++|.+++.... .+++..+..++.+++.++.|||+   .+++|+||+|+||++++++.++++|||.+......    ...
T Consensus        72 ~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~----~~~  143 (244)
T smart00220       72 GDLFDLLKKRG-RLSEDEARFYARQILSALEYLHS---NGIIHRDLKPENILLDEDGHVKLADFGLARQLDPG----GLL  143 (244)
T ss_pred             CCHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCcCHHHeEECCCCcEEEccccceeeeccc----ccc
Confidence            99999987754 38999999999999999999999   89999999999999999999999999999776432    133


Q ss_pred             ecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcH
Q 003199          697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR  776 (840)
Q Consensus       697 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  776 (840)
                      ....++..|+|||...+..++.++||||+|+++|++++|..||.... .......+   ......        .......
T Consensus       144 ~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~-~~~~~~~~---~~~~~~--------~~~~~~~  211 (244)
T smart00220      144 TTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDD-QLLELFKK---IGKPKP--------PFPPPEW  211 (244)
T ss_pred             ccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHH---HhccCC--------CCccccc
Confidence            45568889999999988889999999999999999999999986521 11111110   000000        0000000


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          777 DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       777 ~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....++.+++.+|+..+|++||++.+++++
T Consensus       212 ~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~  241 (244)
T smart00220      212 KISPEAKDLIRKLLVKDPEKRLTAEEALQH  241 (244)
T ss_pred             cCCHHHHHHHHHHccCCchhccCHHHHhhC
Confidence            034567788889999999999999999873

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.6e-30  Score=269.32  Aligned_cols=209  Identities=25%  Similarity=0.365  Sum_probs=174.0

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |...+-||-|+||+|.++... +...+|+|.+.+...       -........+.|-.||+.-..+=||+++-.|.+.+.
T Consensus       631 Fvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDV-------l~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdn  703 (1034)
T KOG0608|consen  631 FVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADV-------LMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDN  703 (1034)
T ss_pred             eEEEeeecccccceeEEEeecchhhHHHHhhhHHHHH-------HhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCc
Confidence            555678999999999998554 567899998854432       223445677889999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      +|+||+|++||++-..|.+.+ .|.+.-++.++..+.+|+++.|.   .|+|||||||+|||||.+|++||+|||++.-+
T Consensus       704 LYFVMdYIPGGDmMSLLIrmg-IFeE~LARFYIAEltcAiesVHk---mGFIHRDiKPDNILIDrdGHIKLTDFGLCTGf  779 (1034)
T KOG0608|consen  704 LYFVMDYIPGGDMMSLLIRMG-IFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  779 (1034)
T ss_pred             eEEEEeccCCccHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHh---ccceecccCccceEEccCCceeeeeccccccc
Confidence            999999999999999887765 68888999999999999999999   99999999999999999999999999997433


Q ss_pred             ---------hccC--CC----------------------------CcceecccccccccCccccccCCCCccccchhHHH
Q 003199          687 ---------QARG--GK----------------------------DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGV  727 (840)
Q Consensus       687 ---------~~~~--~~----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~  727 (840)
                               +..+  ..                            .......+||+.|+|||++....++...|.||.||
T Consensus       780 RWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gv  859 (1034)
T KOG0608|consen  780 RWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGV  859 (1034)
T ss_pred             eeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhH
Confidence                     1100  00                            00112357999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCc
Q 003199          728 VLMELITGRKPVEDDFGDNK  747 (840)
Q Consensus       728 il~el~tg~~p~~~~~~~~~  747 (840)
                      |||||+.|++||.++...+.
T Consensus       860 il~em~~g~~pf~~~tp~~t  879 (1034)
T KOG0608|consen  860 ILYEMLVGQPPFLADTPGET  879 (1034)
T ss_pred             HHHHHhhCCCCccCCCCCcc
Confidence            99999999999987655444

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-30  Score=252.43  Aligned_cols=203  Identities=24%  Similarity=0.352  Sum_probs=170.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  603 (840)
                      .+|...++||+|+|.+|..+.+ ++.+.+|+|+++++.......       ..=.+.|-.+..+- +||.+|-+..+|..
T Consensus       250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~ndded-------idwvqtek~vfe~asn~pflvglhscfqt  322 (593)
T KOG0695|consen  250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDED-------IDWVQTEKHVFEQASNNPFLVGLHSCFQT  322 (593)
T ss_pred             ccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCccc-------chhHHhhHHHHHhccCCCeEEehhhhhcc
Confidence            4577788999999999999855 478999999986654322111       11123344444444 69999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      +...++|.||++||+|--+++++. .++++.++.+...|.-||.|||+   +||+.||+|..|||+|..|++|++|+|+.
T Consensus       323 esrlffvieyv~ggdlmfhmqrqr-klpeeharfys~ei~lal~flh~---rgiiyrdlkldnvlldaeghikltdygmc  398 (593)
T KOG0695|consen  323 ESRLFFVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEICLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMC  398 (593)
T ss_pred             cceEEEEEEEecCcceeeehhhhh-cCcHHHhhhhhHHHHHHHHHHhh---cCeeeeeccccceEEccCCceeecccchh
Confidence            999999999999999977776654 79999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCC
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD  742 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  742 (840)
                      +.--.   ....++.++|||.|+|||++.+..|....|.|++||+++||+.|+.||+..
T Consensus       399 ke~l~---~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdiv  454 (593)
T KOG0695|consen  399 KEGLG---PGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIV  454 (593)
T ss_pred             hcCCC---CCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCccee
Confidence            75322   334567889999999999999999999999999999999999999999753

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.4e-31  Score=251.27  Aligned_cols=272  Identities=25%  Similarity=0.328  Sum_probs=195.5

Q ss_pred             ccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC----
Q 003199          530 EKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL----  604 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~----  604 (840)
                      ..+.||.|+||.||.+ +-++|+.||.|++..-        .......+.+-+|++++..++|+|++..++...-.    
T Consensus        57 PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnv--------fq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~df  128 (449)
T KOG0664|consen   57 PDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNV--------FQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSF  128 (449)
T ss_pred             CCCcccccceeEEEeccCCCCccchhHhhcchH--------HHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchH
Confidence            4567999999999998 5568999999987332        22344567888999999999999999988776432    


Q ss_pred             -ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 -YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 -~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                       .+.|.|+|.| ..+|.+.+-... .++-..+.-+.+||++||.|||+   .+|.||||||.|.+++++...||||||+|
T Consensus       129 FqEiYV~TELm-QSDLHKIIVSPQ-~Ls~DHvKVFlYQILRGLKYLHs---A~ILHRDIKPGNLLVNSNCvLKICDFGLA  203 (449)
T KOG0664|consen  129 FQELYVLTELM-QSDLHKIIVSPQ-ALTPDHVKVFVYQILRGLKYLHT---ANILHRDIKPGNLLVNSNCILKICDFGLA  203 (449)
T ss_pred             HHHHHHHHHHH-HhhhhheeccCC-CCCcchhhhhHHHHHhhhHHHhh---cchhhccCCCccEEeccCceEEecccccc
Confidence             3557888988 457776665443 67888889999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhh---------h
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW---------V  753 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~---------~  753 (840)
                      +.-..  ......+...-|..|.|||.+.+. .|+.+.||||.|||+.|++.++.-|+....-. .+...         .
T Consensus       204 Rvee~--d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~Piq-QL~lItdLLGTPs~E  280 (449)
T KOG0664|consen  204 RTWDQ--RDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIE-QLQMIIDLLGTPSQE  280 (449)
T ss_pred             cccch--hhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHH-HHHHHHHHhCCCcHH
Confidence            87543  233344556678899999999875 58999999999999999999998887643211 11000         0


Q ss_pred             hhhhccccchhhhcccccC-CCc---------HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh-hcCCCCCCC
Q 003199          754 SIKVDTKEGIMEVLDKKLS-GSF---------RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA-EADPCRFES  817 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~-~~~~~~~~~  817 (840)
                      ..+...+.....++..... +..         .+.-.+...+..+++..||++|.+..+.+.++. +-...++-+
T Consensus       281 aMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~e~R~r~~s  355 (449)
T KOG0664|consen  281 AMKYACEGAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLEEGRLRFHS  355 (449)
T ss_pred             HHHHHhhhhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcccccccccceeeee
Confidence            0011111111112211111 111         122234556677899999999999999998874 333334433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-31  Score=293.75  Aligned_cols=389  Identities=28%  Similarity=0.360  Sum_probs=277.2

Q ss_pred             ccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccC
Q 003199            6 LTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQI   84 (840)
Q Consensus         6 ~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~   84 (840)
                      ..+.+|. ++.+.+|+.|.++.|.|. ..|.+..++.+|++|+|.+|   ++..+|. .+..+.+|+.|+++.|.+. ..
T Consensus        56 ~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n---~l~~lP~-~~~~lknl~~LdlS~N~f~-~~  129 (1081)
T KOG0618|consen   56 QISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNN---RLQSLPA-SISELKNLQYLDLSFNHFG-PI  129 (1081)
T ss_pred             ccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccc---hhhcCch-hHHhhhcccccccchhccC-CC
Confidence            3445553 777778888888888887 77777778888888888888   5666654 3777888888888888765 44


Q ss_pred             CccccCCCCCc-------------------EEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCC-----
Q 003199           85 PASIGNVTSLT-------------------DLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNL-----  140 (840)
Q Consensus        85 ~~~~~~l~~L~-------------------~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l-----  140 (840)
                      |..+..++.++                   .++|..|.+.+.++..+..+..  .|+|++|.+.  ..  .+..+     
T Consensus       130 Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~--dls~~~~l~~  203 (1081)
T KOG0618|consen  130 PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VL--DLSNLANLEV  203 (1081)
T ss_pred             chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--hh--hhhhccchhh
Confidence            44444444444                   4444444454455555555555  5888877633  11  12222     


Q ss_pred             ---------------CCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccC
Q 003199          141 ---------------TELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEV  205 (840)
Q Consensus       141 ---------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  205 (840)
                                     ++|+.|+.++|.+....+.  ..-.+|+++++++|+++..+ +.++.+.+|+.|...+|+++ .+
T Consensus       204 l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~l  279 (1081)
T KOG0618|consen  204 LHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-AL  279 (1081)
T ss_pred             hhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hh
Confidence                           3455555555555522211  12357888899999988554 88888999999999999996 67


Q ss_pred             CcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccC-CceEEeeCceeeccCC-ccccC
Q 003199          206 PQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKN-LLRFRVSNNHLEGSIP-EGILS  283 (840)
Q Consensus       206 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~-~~~~~  283 (840)
                      |..+..+++|+.|++..|.++ -+|....++..|+.|+|..|++....+..|..+.. |..|..+.|++. ..| ..=..
T Consensus       280 p~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~  357 (1081)
T KOG0618|consen  280 PLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENN  357 (1081)
T ss_pred             HHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchh
Confidence            777888888999999999887 56667777888899999999888554444444443 777788888887 334 22224


Q ss_pred             CCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhc
Q 003199          284 LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLM  363 (840)
Q Consensus       284 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  363 (840)
                      ++.|+.|.+.+|.+++.....+.+.++|+.|+|++|+|..+....+.++..|++|+||+|+|+ .+|..+.+++.|++|.
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR  436 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence            677888888888888877777888888888888888888666667778888888888888888 6788888888888888


Q ss_pred             ccCCccCCCcchhcccccCCCEEECcCccccc-cCCchhhccCCCeEEccCCC
Q 003199          364 LQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG-YIPESLCELLPNSINFSNNR  415 (840)
Q Consensus       364 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~~~~~~l~l~~N~  415 (840)
                      ..+|+|. .+| .+..++.|+.+|||.|.|+. .+|.....-.+++||++||.
T Consensus       437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            8888887 667 77888888888888888874 34444333456788888887

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.96  E-value=4.6e-30  Score=267.43  Aligned_cols=204  Identities=27%  Similarity=0.373  Sum_probs=175.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC---CCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR---HKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~  601 (840)
                      ..|+..+.+|+|+||.|+.|.++ ....|+||.+++++.-......+  +..-.+..||++|..++   |+||++++++|
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrD--rkLGtVp~EIqIla~l~~~sH~NIlKlLdfF  638 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRD--RKLGTVPSEIQILATLNKHSHENILKLLDFF  638 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcc--cccCccchhHHHHHHhhhcCccchhhhhhee
Confidence            45888899999999999999554 56789999998776543222111  12345678999999997   99999999999


Q ss_pred             ecCccceEEEeec-CCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          602 SSLYCNLLVYEYM-PNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       602 ~~~~~~~lV~e~~-~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      ++++.+||+||-. ++.+|++++.... .+++.++..|++||+.|+++||+   .+|||||||-+||.++.+|-+||+||
T Consensus       639 Eddd~yyl~te~hg~gIDLFd~IE~kp-~m~E~eAk~IFkQV~agi~hlh~---~~ivhrdikdenvivd~~g~~klidf  714 (772)
T KOG1152|consen  639 EDDDYYYLETEVHGEGIDLFDFIEFKP-RMDEPEAKLIFKQVVAGIKHLHD---QGIVHRDIKDENVIVDSNGFVKLIDF  714 (772)
T ss_pred             ecCCeeEEEecCCCCCcchhhhhhccC-ccchHHHHHHHHHHHhccccccc---cCceecccccccEEEecCCeEEEeec
Confidence            9999999999986 4568999998764 78999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCC
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVE  740 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~  740 (840)
                      |.|.+.     +..+...+.||..|.|||++.+..| ...-|||++|+++|.++....||.
T Consensus       715 gsaa~~-----ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  715 GSAAYT-----KSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             cchhhh-----cCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            999875     4556778999999999999999887 566899999999999999999985

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7.8e-29  Score=235.56  Aligned_cols=256  Identities=20%  Similarity=0.323  Sum_probs=197.6

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeee
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYC  599 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~  599 (840)
                      -+..+.|++.+.+|+|.||.+-.+..+ +.+.+++|-+..+..           ..++|.+|..---.+ .|.||+.-++
T Consensus        20 v~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t-----------t~~dF~rEfhY~~~Ls~H~hIi~tY~   88 (378)
T KOG1345|consen   20 VDLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT-----------TQADFVREFHYSFFLSPHQHIIDTYE   88 (378)
T ss_pred             cchhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh-----------hHHHHHHHhccceeeccchhhhHHHH
Confidence            345677888899999999999999665 678999998755442           356788887655555 4899998875


Q ss_pred             -EEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc-C-CCCCe
Q 003199          600 -YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD-V-NYQPK  676 (840)
Q Consensus       600 -~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~-~~~~k  676 (840)
                       .|+..+.+++++||++.|+|.+.+...  .+.+.....++.|+++|+.|+|+   +.+||||||.+|||+- . ...+|
T Consensus        89 vaFqt~d~YvF~qE~aP~gdL~snv~~~--GigE~~~K~v~~ql~SAi~fMHs---knlVHRdlK~eNiLif~~df~rvK  163 (378)
T KOG1345|consen   89 VAFQTSDAYVFVQEFAPRGDLRSNVEAA--GIGEANTKKVFAQLLSAIEFMHS---KNLVHRDLKAENILIFDADFYRVK  163 (378)
T ss_pred             HHhhcCceEEEeeccCccchhhhhcCcc--cccHHHHHHHHHHHHHHHHHhhc---cchhhcccccceEEEecCCccEEE
Confidence             467778888999999999999998875  47788889999999999999999   9999999999999993 3 34799


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccccC-----CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhh
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-----KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~  751 (840)
                      +||||.++....      .......+..|.+||.....     ...+.+|||.||+++|.++||..||+..-..+..+..
T Consensus       164 lcDFG~t~k~g~------tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~  237 (378)
T KOG1345|consen  164 LCDFGLTRKVGT------TVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWE  237 (378)
T ss_pred             eeecccccccCc------eehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHH
Confidence            999999875421      22223345679999976432     3578899999999999999999999976667777777


Q ss_pred             hhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCC---CCHHHHHHHh
Q 003199          752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR---PTMNEVVQLL  807 (840)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---ps~~evl~~L  807 (840)
                      |.++...        ..++.+..+......+.++..+-+..+|++|   .+++...+.+
T Consensus       238 ~~~w~~r--------k~~~~P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~kk~rk~~  288 (378)
T KOG1345|consen  238 WEQWLKR--------KNPALPKKFNPFSEKALRLFKKSLTPRFKDRCKIWTAKKMRKCL  288 (378)
T ss_pred             HHHHhcc--------cCccCchhhcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHH
Confidence            7765322        2234555555566677777889999999999   4444444433

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-28  Score=240.55  Aligned_cols=258  Identities=25%  Similarity=0.325  Sum_probs=194.8

Q ss_pred             HHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..+|..++.+|.|+- .|..| +.-.++.||+|+...+..-        ....+...+|...+..+.|+|+++++.++.-
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n--------~~~akra~rel~l~~~v~~~nii~l~n~ftP   86 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQN--------QTHAKRAYRELKLMKCVNHKNIISLLNVFTP   86 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchhhccCceehhhhcCcccc--------CccchhhhhhhhhhhhhcccceeeeeeccCc
Confidence            346677788999988 56565 5557899999987554211        2334667789999999999999999998843


Q ss_pred             ------CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 ------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 ------~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                            ....|+|||+| .++|...+..   .++..++..+.+|+..|++|||+   .||+||||||+||++..++.+||
T Consensus        87 ~~~l~~~~e~y~v~e~m-~~nl~~vi~~---elDH~tis~i~yq~~~~ik~lhs---~~IihRdLkPsnivv~~~~~lKi  159 (369)
T KOG0665|consen   87 QKTLEEFQEVYLVMELM-DANLCQVILM---ELDHETISYILYQMLCGIKHLHS---AGIIHRDLKPSNIVVNSDCTLKI  159 (369)
T ss_pred             cccHHHHHhHHHHHHhh-hhHHHHHHHH---hcchHHHHHHHHHHHHHHHHHHh---cceeecccCcccceecchhheee
Confidence                  34668999999 6789888873   57889999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      .|||+|+.-.    .+...+....|..|.|||++.+-.+.+.+||||.||++.||++|+.-|.+.    ..+-.|.+...
T Consensus       160 ~dfg~ar~e~----~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~----d~idQ~~ki~~  231 (369)
T KOG0665|consen  160 LDFGLARTED----TDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGK----DHIDQWNKIIE  231 (369)
T ss_pred             ccchhhcccC----cccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCc----hHHHHHHHHHH
Confidence            9999997642    233456677899999999999988999999999999999999999988642    22223322211


Q ss_pred             ccccc-----------hhh----------------hcccccCCCcH---HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 DTKEG-----------IME----------------VLDKKLSGSFR---DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ~~~~~-----------~~~----------------~~~~~~~~~~~---~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .....           ...                +.|..++...+   -......+++.+|+-.+|++|.|++++++|
T Consensus       232 ~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  232 QLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             HhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence            00000           000                01111111110   112345678889999999999999999988

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.95  E-value=8.8e-27  Score=234.41  Aligned_cols=212  Identities=37%  Similarity=0.563  Sum_probs=182.4

Q ss_pred             eeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       534 lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      ||+|++|.||++... +++.+++|++.......         ..+.+.+|+..++.++|++++++++++......++++|
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~---------~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e   71 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS---------LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVME   71 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh---------HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEe
Confidence            689999999999765 48999999985443210         34678899999999999999999999999899999999


Q ss_pred             ecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-CCCCeeecccchhhhhccCC
Q 003199          613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVADFGIAKVLQARGG  691 (840)
Q Consensus       613 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~Dfg~a~~~~~~~~  691 (840)
                      |+++++|.+++......+++..+..++.++++++++||+   .+++|+||+|.||+++. ++.++|+|||.+........
T Consensus        72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~  148 (215)
T cd00180          72 YCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS  148 (215)
T ss_pred             cCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc
Confidence            999999999998753468999999999999999999999   89999999999999999 89999999999976543211


Q ss_pred             CCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          692 KDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       692 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                         ......+...|++||..... ..+.++|+|++|++++++                                      
T Consensus       149 ---~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l--------------------------------------  187 (215)
T cd00180         149 ---LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL--------------------------------------  187 (215)
T ss_pred             ---hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH--------------------------------------
Confidence               23345578899999998777 788999999999999999                                      


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                               ..+.+++.+|++.+|++||++.++++++
T Consensus       188 ---------~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 ---------PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             ---------HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence                     3566788899999999999999998754

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=5.3e-27  Score=240.63  Aligned_cols=131  Identities=28%  Similarity=0.366  Sum_probs=111.0

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-----C---CCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-----H---KNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----h---~niv~  596 (840)
                      .+|...++||-|.|++||++ +..+.+.||+|+.+...           ...+....||+++++++     |   ..||+
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq-----------hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~  146 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ-----------HYTEAALDEIKLLQQVREGDPNDPGKKCVVQ  146 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh-----------HHHHHHHHHHHHHHHHHhcCCCCCCCceeee
Confidence            46788899999999999998 66778999999985433           23456678999999984     2   46999


Q ss_pred             eeeEEe----cCccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc
Q 003199          597 LYCYFS----SLYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD  670 (840)
Q Consensus       597 l~~~~~----~~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~  670 (840)
                      ++++|.    .+.+.+||+|++ |.+|..++... .+.++...+.+|++||+.||.|||..  .||+|-||||+|||+.
T Consensus       147 LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~e--cgIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  147 LLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRE--CGIIHTDLKPENVLLC  222 (590)
T ss_pred             eeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHh--cCccccCCCcceeeee
Confidence            999884    456889999999 88999988765 46799999999999999999999997  5899999999999984

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.94  E-value=5.9e-28  Score=256.09  Aligned_cols=250  Identities=30%  Similarity=0.383  Sum_probs=195.2

Q ss_pred             HhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|....++|+|.||.|||+ +..+++..|||+++......          .+.+..|+-+++.++|+|||.++|-+...
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd----------~~~iqqei~~~~dc~h~nivay~gsylr~   84 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDD----------FSGIQQEIGMLRDCRHPNIVAYFGSYLRR   84 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeeeccCCcc----------ccccccceeeeecCCCcChHHHHhhhhhh
Confidence            45677789999999999999 55689999999996654322          34567799999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..+++||||.+|+|.+.-+... .+.+.++..+++...+|++|||+   ++-+|||||-.||++++.|.+|++|||.+.
T Consensus        85 dklwicMEycgggslQdiy~~Tg-plselqiayvcRetl~gl~ylhs---~gk~hRdiKGanilltd~gDvklaDfgvsa  160 (829)
T KOG0576|consen   85 DKLWICMEYCGGGSLQDIYHVTG-PLSELQIAYVCRETLQGLKYLHS---QGKIHRDIKGANILLTDEGDVKLADFGVSA  160 (829)
T ss_pred             cCcEEEEEecCCCcccceeeecc-cchhHHHHHHHhhhhccchhhhc---CCcccccccccceeecccCceeecccCchh
Confidence            99999999999999998776554 68888999999999999999999   999999999999999999999999999987


Q ss_pred             hhhccCCCCcceecccccccccCcccc---ccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYA---YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      .+..   .-.....+.||+.|||||+.   ..+.|..++|||+.|+...|+-.-++|..+..   .....    .+....
T Consensus       161 qita---ti~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlh---pmr~l----~LmTkS  230 (829)
T KOG0576|consen  161 QITA---TIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLH---PMRAL----FLMTKS  230 (829)
T ss_pred             hhhh---hhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccc---hHHHH----HHhhcc
Confidence            6632   33445678899999999976   45678999999999999999998888754321   11000    111111


Q ss_pred             chhhhccccc--CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 003199          762 GIMEVLDKKL--SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ  805 (840)
Q Consensus       762 ~~~~~~~~~~--~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~  805 (840)
                      ..+   .+.+  ...+.+.   +-.+++.|+.++|++||+++.+++
T Consensus       231 ~~q---pp~lkDk~kws~~---fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  231 GFQ---PPTLKDKTKWSEF---FHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             CCC---CCcccCCccchHH---HHHHHHHHhcCCCccCCChhhhee
Confidence            000   1111  1122233   335666899999999999987664

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.94  E-value=7e-27  Score=237.24  Aligned_cols=268  Identities=26%  Similarity=0.339  Sum_probs=197.9

Q ss_pred             HHHHHHhcCccCeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcc
Q 003199          521 QREILEAMTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIV  595 (840)
Q Consensus       521 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv  595 (840)
                      ...+.+.|...++||+|.|++||++...    ..+.||+|.+.....            -..+..|++++..+ .+.||+
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~------------p~ri~~El~~L~~~gG~~ni~   98 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS------------PSRILNELEMLYRLGGSDNII   98 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC------------chHHHHHHHHHHHhccchhhh
Confidence            4556778889999999999999998433    467899998854432            24578899999999 599999


Q ss_pred             eeeeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-CCC
Q 003199          596 KLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQ  674 (840)
Q Consensus       596 ~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~  674 (840)
                      ++.+++...+...+|+||++.....++...    ++...+..+++.+..||+++|+   .|||||||||+|++.+. .+.
T Consensus        99 ~~~~~~rnnd~v~ivlp~~~H~~f~~l~~~----l~~~~i~~Yl~~ll~Al~~~h~---~GIvHRDiKpsNFL~n~~t~r  171 (418)
T KOG1167|consen   99 KLNGCFRNNDQVAIVLPYFEHDRFRDLYRS----LSLAEIRWYLRNLLKALAHLHK---NGIVHRDIKPSNFLYNRRTQR  171 (418)
T ss_pred             cchhhhccCCeeEEEecccCccCHHHHHhc----CCHHHHHHHHHHHHHHhhhhhc---cCccccCCCccccccccccCC
Confidence            999999999999999999999988888764    6788999999999999999999   99999999999999975 456


Q ss_pred             Ceeecccchhhhhcc------------------C-----------------------CCCcceecccccccccCcccccc
Q 003199          675 PKVADFGIAKVLQAR------------------G-----------------------GKDSTTTVIAGTYGYLAPEYAYS  713 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~------------------~-----------------------~~~~~~~~~~gt~~y~aPE~~~~  713 (840)
                      -.|.|||+|......                  +                       ..........||++|.|||++..
T Consensus       172 g~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k  251 (418)
T KOG1167|consen  172 GVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFR  251 (418)
T ss_pred             ceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhh
Confidence            799999999732110                  0                       00111234679999999999866


Q ss_pred             C-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh----------ccc------c---chh---------
Q 003199          714 S-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV----------DTK------E---GIM---------  764 (840)
Q Consensus       714 ~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~----------~~~------~---~~~---------  764 (840)
                      . ..+.+.||||.|||+.-+++++.||-....+...+...+.+..          ...      .   ...         
T Consensus       252 ~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~  331 (418)
T KOG1167|consen  252 CPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETL  331 (418)
T ss_pred             ccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhcc
Confidence            4 5688999999999999999999999765443332222111000          000      0   000         


Q ss_pred             --hhccc------ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          765 --EVLDK------KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       765 --~~~~~------~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                        +.+.+      ............++++..+|+..||.+|.|++++++|-
T Consensus       332 ~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkHp  382 (418)
T KOG1167|consen  332 HIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKHP  382 (418)
T ss_pred             ChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcCc
Confidence              00000      00001111223567888899999999999999999873

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.94  E-value=2.7e-27  Score=243.71  Aligned_cols=261  Identities=24%  Similarity=0.271  Sum_probs=197.1

Q ss_pred             HHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC------CCCccee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR------HKNIVKL  597 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~l  597 (840)
                      -.+|.+....|+|-|++|.+| +..-|+.||||+|....           ...+.=..|+++|+++.      ..+++++
T Consensus       431 D~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE-----------~M~KtGl~EleiLkKL~~AD~Edk~Hclrl  499 (752)
T KOG0670|consen  431 DSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE-----------VMHKTGLKELEILKKLNDADPEDKFHCLRL  499 (752)
T ss_pred             cceeEEEeccccceeeeeeeccccCCCCeeEEEEeecch-----------HHhhhhhHHHHHHHHhhccCchhhhHHHHH
Confidence            356777788999999999999 44568899999995543           22344567999999995      3578999


Q ss_pred             eeEEecCccceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-C
Q 003199          598 YCYFSSLYCNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-Q  674 (840)
Q Consensus       598 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~  674 (840)
                      +..|....+.|||+|-+ ..+|.+.+.+.+  ..+....+..++.|+.-||..|..   .+|+|.||||.|||+++.- .
T Consensus       500 ~r~F~hknHLClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~---c~vlHaDIKPDNiLVNE~k~i  575 (752)
T KOG0670|consen  500 FRHFKHKNHLCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKK---CGVLHADIKPDNILVNESKNI  575 (752)
T ss_pred             HHHhhhcceeEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHh---cCeeecccCccceEeccCcce
Confidence            99999999999999988 678999998764  467788999999999999999999   8999999999999998754 5


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +||||||.|.....     ...+...-+..|.|||++.+-.|+...|+||+||.|||+.||+..|.+..+... +...+.
T Consensus       576 LKLCDfGSA~~~~e-----neitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~M-Lrl~me  649 (752)
T KOG0670|consen  576 LKLCDFGSASFASE-----NEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQM-LRLFME  649 (752)
T ss_pred             eeeccCcccccccc-----ccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHH-HHHHHH
Confidence            79999999987643     223334456789999999999999999999999999999999999887432110 000000


Q ss_pred             hh-------------------------------hcccc--chhhhccc------------ccCCCcHHHHHHHHHHHHHc
Q 003199          755 IK-------------------------------VDTKE--GIMEVLDK------------KLSGSFRDEMIQVLRIAIRC  789 (840)
Q Consensus       755 ~~-------------------------------~~~~~--~~~~~~~~------------~~~~~~~~~~~~l~~l~~~c  789 (840)
                      .+                               +-..+  .+...+.+            .++.+-......+.+|+-.|
T Consensus       650 ~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkm  729 (752)
T KOG0670|consen  650 LKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKM  729 (752)
T ss_pred             hcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHH
Confidence            00                               00000  00000111            12222234456778888899


Q ss_pred             cCCCCCCCCCHHHHHHH
Q 003199          790 TSKSPATRPTMNEVVQL  806 (840)
Q Consensus       790 l~~dP~~Rps~~evl~~  806 (840)
                      +..||++|.|..++++|
T Consensus       730 l~LdP~KRit~nqAL~H  746 (752)
T KOG0670|consen  730 LILDPEKRITVNQALKH  746 (752)
T ss_pred             hccChhhcCCHHHHhcC
Confidence            99999999999999876

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.93  E-value=1.5e-25  Score=227.96  Aligned_cols=200  Identities=35%  Similarity=0.486  Sum_probs=170.9

Q ss_pred             cCccCeeeccCCcEEEEEEeCC-CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNS-GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |...+.||.|++|.||+|...+ ++.+|+|.+......         ...+.+.+|++.+++++|+|++++++++.....
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---------~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~   71 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE---------KQREEFLREIRILKKLKHPNIVKLYGVFEDPEP   71 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch---------HHHHHHHHHHHHHHhCCCCChhhheeeeecCCc
Confidence            4456789999999999997764 899999998543211         245688899999999999999999999999899


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++++||+++++|.+++......+++..+..++.+++.++.+||+   .+++|+|++|+||+++.++.++|+|||.+...
T Consensus        72 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~  148 (225)
T smart00221       72 LYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHS---LGIVHRDLKPENILLGMDGLVKLADFGLARFI  148 (225)
T ss_pred             eEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeeCceeeEe
Confidence            999999999999999998764338999999999999999999999   89999999999999999999999999998876


Q ss_pred             hccCCCCcceecccccccccCcccc-ccCCCCccccchhHHHHHHHHHhCCCCCCC
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYA-YSSKATTKCDVYSFGVVLMELITGRKPVED  741 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~tg~~p~~~  741 (840)
                      ....  ........++..|++||.. ....++.++|||+||++++||++|+.||..
T Consensus       149 ~~~~--~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      149 HRDL--AALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             cCcc--cccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            4321  1122345677889999988 666788899999999999999999999964

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-28  Score=242.24  Aligned_cols=382  Identities=20%  Similarity=0.231  Sum_probs=207.4

Q ss_pred             CEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecC-ccccccCCccccCCCCCcEEE
Q 003199           20 RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT-CALHGQIPASIGNVTSLTDLE   98 (840)
Q Consensus        20 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~   98 (840)
                      ..++|..|+|+.+.|.+|..+++|++|||++|   .|+.|.+++|.+|++|.+|.+.+ |+|+....+.|++|..|+.|.
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N---~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN---NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceeccccc---chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            34455555555444445555555555555555   44444455555555444444443 444433334455555555555


Q ss_pred             ccCCcccccCchhhhcCCCCCeeecccCccccccCCc-ccCCCCCCCeeeccCCc------------ccccCCccccCCC
Q 003199           99 LTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPE-ELGNLTELTDLDMSVNH------------LSGKIPESILRLP  165 (840)
Q Consensus        99 L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~-~l~~l~~L~~L~L~~n~------------l~~~~~~~~~~l~  165 (840)
                      +.-|++.-...+.|..+++|..|.+..|.  ...++. .|..+..++++++..|.            +-...|..+++..
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~--~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNK--IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchh--hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            55555544444445555555555555443  222332 44445555555554444            1112233333333


Q ss_pred             CCcEEEeeccccccccchhhhcC-CCCCEEEccCCcCcccCC-cCCCCCCCcceeccccccccccCCccccCCCCchhhh
Q 003199          166 KLRVLQLYNNSLSGEISSVIANS-TTLTMLSLYDNSLTGEVP-QDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFL  243 (840)
Q Consensus       166 ~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  243 (840)
                      ...-..+.++++..+.+..|... ..+..=..+.+.+..+.| ..|..+++|+.|+|++|+|+.+.+.+|.+...++.|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            33333344444433333333221 112111122222222333 3577888888888888888888888888888888888


Q ss_pred             cccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccc---------------c--CCcccC
Q 003199          244 VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG---------------P--IANTVG  306 (840)
Q Consensus       244 l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~--~~~~~~  306 (840)
                      |..|++..+....|.++..|+.|+|.+|+|+...|.+|..+..|.+|.|-.|.+.=               .  .|. =+
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~-Cq  383 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR-CQ  383 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC-CC
Confidence            88888888878888888888888888888888888888888888888888776530               0  011 01


Q ss_pred             CCCCCceeecccceeee---ccchhhcc---------cCcccE-EEcCCCccCCCCCCcccCccccchhcccCCccCCCc
Q 003199          307 NARNLSELFMQRNQISG---FIPSEIYR---------AISLVK-IDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSI  373 (840)
Q Consensus       307 ~l~~L~~L~L~~N~l~~---~~p~~~~~---------l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  373 (840)
                      ....++.+.++++.+..   ..|++.+-         .+-+.+ ..-|+..++ .+|..+.  ....+|++.+|.++ .+
T Consensus       384 ~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~v  459 (498)
T KOG4237|consen  384 SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SV  459 (498)
T ss_pred             CCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-cc
Confidence            22345666666665532   12222211         222333 234444444 5555443  34667888888887 55


Q ss_pred             chhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCC
Q 003199          374 PNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNN  414 (840)
Q Consensus       374 ~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N  414 (840)
                      |..  .+.+| .+|+++|+++-.--..|.++ ++..|-+++|
T Consensus       460 p~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  460 PDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            555  55666 78888888773323333333 2344444443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=4.7e-26  Score=273.16  Aligned_cols=198  Identities=16%  Similarity=0.177  Sum_probs=142.6

Q ss_pred             cCC-CCcceeeeEE-------ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEec
Q 003199          589 IRH-KNIVKLYCYF-------SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHR  660 (840)
Q Consensus       589 l~h-~niv~l~~~~-------~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~  660 (840)
                      ++| +||+++++++       ......+.++||+ +++|.+++......+++.++..++.||++||+|||+   ++||||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~gIvHr  104 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHS---QGIVVH  104 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHh---CCeeec
Confidence            445 5777788776       2334567789988 679999998765579999999999999999999999   999999


Q ss_pred             CCCCCCEEEcC-------------------CCCCeeecccchhhhhccCCC-------------CcceecccccccccCc
Q 003199          661 DIKSTNILLDV-------------------NYQPKVADFGIAKVLQARGGK-------------DSTTTVIAGTYGYLAP  708 (840)
Q Consensus       661 Dlk~~Nill~~-------------------~~~~kl~Dfg~a~~~~~~~~~-------------~~~~~~~~gt~~y~aP  708 (840)
                      ||||+|||++.                   ++.+|++|||+++........             ........||+.||||
T Consensus       105 DlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  184 (793)
T PLN00181        105 NVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSP  184 (793)
T ss_pred             cCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceECh
Confidence            99999999954                   455677777777643110000             0011224588999999


Q ss_pred             cccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHH
Q 003199          709 EYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR  788 (840)
Q Consensus       709 E~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  788 (840)
                      |++.+..++.++|||||||++|||++|..|+....    ..   .. ...     ...    .++...........++.+
T Consensus       185 E~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~----~~---~~-~~~-----~~~----~~~~~~~~~~~~~~~~~~  247 (793)
T PLN00181        185 EEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS----RT---MS-SLR-----HRV----LPPQILLNWPKEASFCLW  247 (793)
T ss_pred             hhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH----HH---HH-HHH-----Hhh----cChhhhhcCHHHHHHHHH
Confidence            99999999999999999999999999988865310    00   00 000     000    111111123345577789


Q ss_pred             ccCCCCCCCCCHHHHHHHh
Q 003199          789 CTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       789 cl~~dP~~Rps~~evl~~L  807 (840)
                      |++++|.+||+|.|++++-
T Consensus       248 ~L~~~P~~Rps~~eil~h~  266 (793)
T PLN00181        248 LLHPEPSCRPSMSELLQSE  266 (793)
T ss_pred             hCCCChhhCcChHHHhhch
Confidence            9999999999999998864

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=7.1e-28  Score=240.83  Aligned_cols=379  Identities=21%  Similarity=0.207  Sum_probs=259.8

Q ss_pred             cccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCC-CCCCccCCCCcccccccccccEEEecCccc
Q 003199            3 FMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNE-NPGFKLWKLPESSIFRLTKLRIMVLATCAL   80 (840)
Q Consensus         3 ~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~-N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l   80 (840)
                      +|.|+-+.|. |+.+++|+.||||+|+|+.+-|++|.+|.+|..|-+.+ |   +|+++|...|.+|..|+.|.+.-|++
T Consensus        76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N---kI~~l~k~~F~gL~slqrLllNan~i  152 (498)
T KOG4237|consen   76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN---KITDLPKGAFGGLSSLQRLLLNANHI  152 (498)
T ss_pred             cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC---chhhhhhhHhhhHHHHHHHhcChhhh
Confidence            4566655554 99999999999999999999999999999999988877 6   89999999999999999999999999


Q ss_pred             cccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCcccc-----------ccCCcccCCCCCCCeeecc
Q 003199           81 HGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLA-----------GTIPEELGNLTELTDLDMS  149 (840)
Q Consensus        81 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~-----------~~~p~~l~~l~~L~~L~L~  149 (840)
                      .-+..+.|..|++|..|.+..|.+....-..|..+..++.+.+..|..+.           ...|..+++..-..-..+.
T Consensus       153 ~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~  232 (498)
T KOG4237|consen  153 NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLY  232 (498)
T ss_pred             cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHH
Confidence            98989999999999999999999994444599999999999999887221           1234455666666666666


Q ss_pred             CCcccccCCccccCC-CCCc-EEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccc
Q 003199          150 VNHLSGKIPESILRL-PKLR-VLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG  227 (840)
Q Consensus       150 ~n~l~~~~~~~~~~l-~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  227 (840)
                      ++++..+.+..|... ..+. .+....+....-+...|..+++|+.|+|++|+|+.+.+.+|.+...+++|.|..|+|..
T Consensus       233 ~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~  312 (498)
T KOG4237|consen  233 YKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF  312 (498)
T ss_pred             HHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH
Confidence            666665444433321 2221 12222223333334456666667777777777666666666666666677777776666


Q ss_pred             cCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeec-----cCCccc-----------cCCCcccEEe
Q 003199          228 PLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEG-----SIPEGI-----------LSLPHVSIID  291 (840)
Q Consensus       228 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~-----~~~~~~-----------~~l~~L~~L~  291 (840)
                      +....|.++..|+.|+|.+|+|+...|.+|..+..|.+|+|-.|.+.-     .+.+++           ..-..++.++
T Consensus       313 v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~  392 (498)
T KOG4237|consen  313 VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIP  392 (498)
T ss_pred             HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhcccc
Confidence            666666666666667777777766667777777777777766665530     000000           1112455666


Q ss_pred             ccCCccccc---CCcc---------cCCCCCCce-eecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccc
Q 003199          292 LSYNSFSGP---IANT---------VGNARNLSE-LFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKK  358 (840)
Q Consensus       292 L~~N~l~~~---~~~~---------~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  358 (840)
                      ++++.+...   .|+.         -...+-+.. ...|++.++ .+|..+.  ...++|++.+|.++ .+|..  .+++
T Consensus       393 ~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~  466 (498)
T KOG4237|consen  393 ISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRS  466 (498)
T ss_pred             chhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhh
Confidence            666555321   1111         112223332 234444444 4554433  24678899999998 66766  6677


Q ss_pred             cchhcccCCccCCCcchhcccccCCCEEECcCc
Q 003199          359 LNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN  391 (840)
Q Consensus       359 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  391 (840)
                      | .+++|+|++...--..|.+++.|.+|-|+.|
T Consensus       467 l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  467 L-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             h-hcccccCceehhhcccccchhhhheeEEecC
Confidence            8 8999999998666678899999999988876

>PLN03210 Resistant to P

Probab=99.92  E-value=3.8e-24  Score=264.16  Aligned_cols=307  Identities=21%  Similarity=0.266  Sum_probs=180.1

Q ss_pred             cccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeec
Q 003199           69 KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDM  148 (840)
Q Consensus        69 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L  148 (840)
                      +|+.|++.++.+. .+|..| ...+|+.|+|.+|++. .+|..+..+++|+.|+|++|.. ...+| .+..+++|++|+|
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~-l~~ip-~ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKN-LKEIP-DLSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCC-cCcCC-ccccCCcccEEEe
Confidence            3555555555544 334444 2345555555555555 3444455555555555554431 22333 2444555555555


Q ss_pred             cCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccccc
Q 003199          149 SVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGP  228 (840)
Q Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  228 (840)
                      ++|.....+|..+..+++|+.|++++|......|..+ ++++|+.|+|++|.....+|..   ..+|+.|+|++|.+. .
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~  739 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E  739 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence            5544333445555555555555555543222223222 4555555555555433233321   234555555555554 2


Q ss_pred             CCccccCCCCchhhhcccccc-------cccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccC
Q 003199          229 LPAKVCSRGKLQYFLVLQNMF-------SGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI  301 (840)
Q Consensus       229 ~~~~~~~l~~L~~L~l~~n~~-------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  301 (840)
                      +|..+ .+++|.+|.+..+..       ....+..+...++|+.|++++|...+.+|..+..+++|+.|++++|..-+.+
T Consensus       740 lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        740 FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence            33322 344444444443221       1112222334568888888888776678888888888888888887544455


Q ss_pred             CcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccC-CccCCCcchhcccc
Q 003199          302 ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS-NKLNSSIPNSLSSL  380 (840)
Q Consensus       302 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l  380 (840)
                      |..+ .+++|+.|+|++|.....+|..   ..+|+.|+|++|.++ .+|..+..+++|+.|+|++ |+++ .+|..+..+
T Consensus       819 P~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L  892 (1153)
T PLN03210        819 PTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKL  892 (1153)
T ss_pred             CCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccc
Confidence            5544 6888889999887554444442   357889999999998 6788888999999999988 4555 577778889


Q ss_pred             cCCCEEECcCcc
Q 003199          381 KSLNVLDLSNNL  392 (840)
Q Consensus       381 ~~L~~L~l~~N~  392 (840)
                      ++|+.|++++|.
T Consensus       893 ~~L~~L~l~~C~  904 (1153)
T PLN03210        893 KHLETVDFSDCG  904 (1153)
T ss_pred             cCCCeeecCCCc
Confidence            999999999884

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=5.4e-24  Score=262.84  Aligned_cols=335  Identities=24%  Similarity=0.294  Sum_probs=152.6

Q ss_pred             CCCCCCCCEEecCCCc------CcccCCccccCCC-CCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCC
Q 003199           13 FSPMQNLRRLDLSNNL------FTGQFPLSVFNLT-NLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIP   85 (840)
Q Consensus        13 ~~~l~~L~~L~Ls~n~------i~~~~p~~~~~l~-~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~   85 (840)
                      |.+|++|+.|.+..+.      +...+|..|..++ +|+.|.+.+|   .+..+|.. | ...+|+.|++.+|.+. .++
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~---~l~~lP~~-f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY---PLRCMPSN-F-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC---CCCCCCCc-C-CccCCcEEECcCcccc-ccc
Confidence            4555555555554332      1223344444443 3555555555   33344432 2 3445555555555554 334


Q ss_pred             ccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCC
Q 003199           86 ASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLP  165 (840)
Q Consensus        86 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  165 (840)
                      ..+..+++|+.|+|++|.....+| .++.+++|+.|+|++|. ....+|..+..+++|+.|++++|..-..+|..+ +++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~-~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS-SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC-CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            444555555555555443222333 24455555555555543 233445555555555555555543222334333 455


Q ss_pred             CCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccc-------ccCCccccCCCC
Q 003199          166 KLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS-------GPLPAKVCSRGK  238 (840)
Q Consensus       166 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~  238 (840)
                      +|+.|+|++|......|..   ..+|++|+|++|.+. .+|..+ .+++|+.|++.++...       ...+..+...++
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence            5555555555432222221   234555555555554 233322 3445555555442211       111111222244


Q ss_pred             chhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeeccc
Q 003199          239 LQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQR  318 (840)
Q Consensus       239 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  318 (840)
                      |+.|++++|...+.+|..++.+++|+.|++++|..-+.+|..+ .+++|+.|++++|......|..   .++|+.|+|++
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~  855 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR  855 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence            5555555555444555555555555555555543222444433 4455555555554332222221   23455555555


Q ss_pred             ceeeeccchhhcccCcccEEEcCCC-ccCCCCCCcccCccccchhcccCC
Q 003199          319 NQISGFIPSEIYRAISLVKIDLSDN-LLSGPIPSGIGNLKKLNLLMLQSN  367 (840)
Q Consensus       319 N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N  367 (840)
                      |.++ .+|..+..+++|+.|+|++| ++. .+|..+..+++|+.|++++|
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence            5554 34555555555555555553 233 34444445555555555444

syringae 6; Provisional

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.92  E-value=1.4e-24  Score=211.78  Aligned_cols=167  Identities=20%  Similarity=0.175  Sum_probs=126.6

Q ss_pred             CChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcce
Q 003199          617 GNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT  696 (840)
Q Consensus       617 gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  696 (840)
                      |+|.+++......++|.+++.++.|++.||+|||+   .+      ||+||+++.++.+|+  ||.++.....       
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~------kp~Nil~~~~~~~~~--fG~~~~~~~~-------   62 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHR---QA------KSGNILLTWDGLLKL--DGSVAFKTPE-------   62 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh---cC------CcccEeEcCccceee--ccceEeeccc-------
Confidence            78999998765579999999999999999999999   55      999999999999999  9998765321       


Q ss_pred             ecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcH
Q 003199          697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR  776 (840)
Q Consensus       697 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  776 (840)
                       ...||+.|||||++.+..++.++|||||||++|||++|+.||............+... ..      . ..........
T Consensus        63 -~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~-~~------~-~~~~~~~~~~  133 (176)
T smart00750       63 -QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNG-MP------A-DDPRDRSNLE  133 (176)
T ss_pred             -cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHH-hc------c-CCccccccHH
Confidence             1258899999999999999999999999999999999999996532211111111100 00      0 0000011112


Q ss_pred             HHHH--HHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          777 DEMI--QVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       777 ~~~~--~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ....  .+.+++.+|+..+|++||++.|+++++...
T Consensus       134 ~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~  169 (176)
T smart00750      134 SVSAARSFADFMRVCASRLPQRREAANHYLAHCRAL  169 (176)
T ss_pred             HHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence            2222  588899999999999999999999998754

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.5e-25  Score=212.97  Aligned_cols=247  Identities=21%  Similarity=0.367  Sum_probs=185.8

Q ss_pred             CeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEE
Q 003199          532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVY  611 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~  611 (840)
                      -+|.+...|+.|+|+|+ |..+++|++......        .....+|.+|.-.++-+.||||+.++|.|..+....++.
T Consensus       196 tkl~e~hsgelwrgrwq-gndivakil~vr~~t--------~risrdfneefp~lrifshpnilpvlgacnsppnlv~is  266 (448)
T KOG0195|consen  196 TKLAESHSGELWRGRWQ-GNDIVAKILNVREVT--------ARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIIS  266 (448)
T ss_pred             hhhccCCCccccccccc-Ccchhhhhhhhhhcc--------hhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEee
Confidence            35888999999999998 556667877443322        344577899999999999999999999999999999999


Q ss_pred             eecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeE-ecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          612 EYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPII-HRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       612 e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~iv-H~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      .||+.|+|+..++++. ...+..++.+++.++|+|++|||+.  .+++ ---+.+..|++|++.+++|+- +-+++    
T Consensus       267 q~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhsl--ep~ipr~~lns~hvmidedltarism-ad~kf----  339 (448)
T KOG0195|consen  267 QYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL--EPMIPRFYLNSKHVMIDEDLTARISM-ADTKF----  339 (448)
T ss_pred             eeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc--chhhhhhhcccceEEecchhhhheec-cccee----
Confidence            9999999999999863 4567789999999999999999984  4555 446899999999999988752 11111    


Q ss_pred             CCCCcceecccccccccCccccccCCC---CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                         +.......-.|.||+||.+...+.   -.++|+|||.+++||+.|...||.+-..-+-      ..++     ..+-
T Consensus       340 ---sfqe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmec------gmki-----aleg  405 (448)
T KOG0195|consen  340 ---SFQEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMEC------GMKI-----ALEG  405 (448)
T ss_pred             ---eeeccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhh------hhhh-----hhcc
Confidence               111223345689999999977654   4579999999999999999999976321100      0000     1112


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      +...+++....   .+.+++.-|+..||.+||.+..|+-.|+++.
T Consensus       406 lrv~ippgis~---hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  406 LRVHIPPGISR---HMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             ccccCCCCccH---HHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            22333444433   4455666799999999999999999998764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=1.3e-23  Score=240.07  Aligned_cols=227  Identities=27%  Similarity=0.364  Sum_probs=136.4

Q ss_pred             CCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecc
Q 003199          141 TELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDL  220 (840)
Q Consensus       141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L  220 (840)
                      ++|++|+|++|+|+. +|..   .++|+.|+|++|.|+.+ |..   ..+|+.|+|++|+++. +|..   .++|+.|+|
T Consensus       242 ~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdL  309 (788)
T PRK15387        242 PELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSV  309 (788)
T ss_pred             CCCcEEEecCCccCc-ccCc---ccccceeeccCCchhhh-hhc---hhhcCEEECcCCcccc-cccc---ccccceeEC
Confidence            344444444444442 2221   23444555555544422 111   1334445555555542 2221   234555555


Q ss_pred             ccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCccccc
Q 003199          221 SENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP  300 (840)
Q Consensus       221 ~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  300 (840)
                      ++|++++. |..   ..+|..|.+++|.+.+ +|..   ..+|+.|+|++|+|+ .+|..   .++|+.|++++|+|+. 
T Consensus       310 S~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-  376 (788)
T PRK15387        310 SDNQLASL-PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-  376 (788)
T ss_pred             CCCccccC-CCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-
Confidence            55555432 211   1234444444554443 3321   147888888888888 45543   3467778888888885 


Q ss_pred             CCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccc
Q 003199          301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSL  380 (840)
Q Consensus       301 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  380 (840)
                      +|..   ..+|+.|+|++|+|++ +|..   ..+|+.|++++|+|++ +|..+   .+|+.|+|++|+|+ .+|..+..+
T Consensus       377 LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L  444 (788)
T PRK15387        377 LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHL  444 (788)
T ss_pred             Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhc
Confidence            3432   3578888888888884 4543   2578889999999884 66533   46788999999997 678888889


Q ss_pred             cCCCEEECcCccccccCCchhhcc
Q 003199          381 KSLNVLDLSNNLLTGYIPESLCEL  404 (840)
Q Consensus       381 ~~L~~L~l~~N~l~~~~p~~~~~~  404 (840)
                      ++|+.|+|++|+|+|.+|..+..+
T Consensus       445 ~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        445 SSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             cCCCeEECCCCCCCchHHHHHHHH
Confidence            999999999999998888776443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.90  E-value=2.8e-23  Score=237.21  Aligned_cols=267  Identities=24%  Similarity=0.325  Sum_probs=142.1

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      .+-..|+|++|.++ .+|..+.  ++|+.|++++|   .++.+|.    .+++|++|+|++|.|+. +|..   .++|+.
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N---~Lt~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~  266 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN---NLTSLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLE  266 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCC---cCCCCCC----CCCCCcEEEecCCccCc-ccCc---ccccce
Confidence            45678899999998 7777765  47888999988   5555553    24567777777777763 3432   246666


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccc
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS  176 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  176 (840)
                      |+|++|.++ .+|..+   ++|+.|+|++|+  ...+|.   .+++|+.|+|++|++++ +|..   ..+|+.|++++|+
T Consensus       267 L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~--Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~  333 (788)
T PRK15387        267 LSIFSNPLT-HLPALP---SGLCKLWIFGNQ--LTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQ  333 (788)
T ss_pred             eeccCCchh-hhhhch---hhcCEEECcCCc--cccccc---cccccceeECCCCcccc-CCCC---cccccccccccCc
Confidence            777777666 334322   345566666665  223333   13455555666655553 2321   1234455555555


Q ss_pred             cccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcc
Q 003199          177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS  256 (840)
Q Consensus       177 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  256 (840)
                      |+++ |..   ..+|++|+|++|+|+. +|..   ..+|+.|++++|+|+                              
T Consensus       334 L~~L-P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~------------------------------  375 (788)
T PRK15387        334 LTSL-PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT------------------------------  375 (788)
T ss_pred             cccc-ccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc------------------------------
Confidence            5432 211   1244455555555442 2221   123344444444443                              


Q ss_pred             cccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCccc
Q 003199          257 LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLV  336 (840)
Q Consensus       257 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  336 (840)
                                         .+|..   ..+|+.|++++|+|++. |..   .++|+.|++++|+|++ +|...   .+|+
T Consensus       376 -------------------~LP~l---~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~  425 (788)
T PRK15387        376 -------------------SLPAL---PSGLKELIVSGNRLTSL-PVL---PSELKELMVSGNRLTS-LPMLP---SGLL  425 (788)
T ss_pred             -------------------cCccc---ccccceEEecCCcccCC-CCc---ccCCCEEEccCCcCCC-CCcch---hhhh
Confidence                               22221   12344444444444432 111   2345555555555553 34321   2456


Q ss_pred             EEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhccc
Q 003199          337 KIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSS  379 (840)
Q Consensus       337 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  379 (840)
                      .|+|++|+|+ .+|..++++++|+.|+|++|+|++..+..+..
T Consensus       426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            6667777766 56666667777777777777777666665533

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.89  E-value=2.5e-22  Score=196.88  Aligned_cols=257  Identities=22%  Similarity=0.270  Sum_probs=194.2

Q ss_pred             hcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecC
Q 003199          527 AMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSL  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~  604 (840)
                      .|.+.++||+|+||+++.| .+-+++.||||.=..+.            ..-+++.|....+.+ ..++|..++-|..++
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS------------~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG   96 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS------------EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEG   96 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEeccccC------------CcchHHHHHHHHHHHcCCCCCCceeeecccc
Confidence            4678899999999999999 44579999999532111            124567788888888 479999999888999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-----CCeeec
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-----QPKVAD  679 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-----~~kl~D  679 (840)
                      .+..||+|.+ |.||.+.+.-.++.|+..++..+|.|++.-++|+|+   +.+|.|||||+|+||..-+     .+.++|
T Consensus        97 ~~NiLVidLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~---k~LIYRDIKPdNFLIGrp~~k~~n~IhiiD  172 (449)
T KOG1165|consen   97 KYNILVIDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHE---KDLIYRDIKPDNFLIGRPGTKDANVIHIID  172 (449)
T ss_pred             chhhhhhhhh-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHh---cceeecccCccceeecCCCCCCCceEEEEe
Confidence            9999999999 899999998877899999999999999999999999   9999999999999997543     478999


Q ss_pred             ccchhhhhccCCCC----cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          680 FGIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       680 fg~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|+.+.++....    .......||.+||+-....++..+.+.|+=|+|-++.+.+-|..||++...+.... .+.++
T Consensus       173 FGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~-kYeKI  251 (449)
T KOG1165|consen  173 FGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKE-KYEKI  251 (449)
T ss_pred             ccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHH-HHHHh
Confidence            99999987654432    23355779999999999999999999999999999999999999999864432211 11111


Q ss_pred             h-hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          756 K-VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       756 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      . ......+.+     +...+++++..-++.+.   ..+-.+-|..+-+...+.
T Consensus       252 Ge~Kr~T~i~~-----Lc~g~P~efa~Yl~yvR---~L~F~E~PDYdylr~Lf~  297 (449)
T KOG1165|consen  252 GETKRSTPIEV-----LCEGFPEEFATYLRYVR---RLDFFETPDYDYLRKLFD  297 (449)
T ss_pred             ccccccCCHHH-----HHhcCHHHHHHHHHHHH---hcCcccCCCHHHHHHHHH
Confidence            1 111111111     22234444444444433   347778888776655544

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.89  E-value=1.1e-22  Score=215.56  Aligned_cols=182  Identities=18%  Similarity=0.142  Sum_probs=134.9

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC--CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN--SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      .+...|...+.||+|+||+||+|...  +++.||||++......     .......+.+.+|++++++++|+|+++.+..
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~-----~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~   89 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPW-----WSKPLARHLAAREIRALKTVRGIGVVPQLLA   89 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccc-----cccHHHHHHHHHHHHHHHhccCCCCCcEEEE
Confidence            34567889999999999999999654  5788899987422100     0012235679999999999999999853322


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCC-CCCCEEEcCCCCCeeec
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDI-KSTNILLDVNYQPKVAD  679 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl-k~~Nill~~~~~~kl~D  679 (840)
                      +   ...++||||+++++|... ...    .   ...++.++++||+|||+   +||+|||| ||+|||++.++.+||+|
T Consensus        90 ~---~~~~LVmE~~~G~~L~~~-~~~----~---~~~~~~~i~~aL~~lH~---~gIiHrDL~KP~NILv~~~~~ikLiD  155 (365)
T PRK09188         90 T---GKDGLVRGWTEGVPLHLA-RPH----G---DPAWFRSAHRALRDLHR---AGITHNDLAKPQNWLMGPDGEAAVID  155 (365)
T ss_pred             c---CCcEEEEEccCCCCHHHh-Ccc----c---hHHHHHHHHHHHHHHHH---CCCeeCCCCCcceEEEcCCCCEEEEE
Confidence            2   357999999999999632 111    1   14678899999999999   99999999 99999999999999999


Q ss_pred             ccchhhhhccCCCCc-----ceecccccccccCccccccCC------CCccccch
Q 003199          680 FGIAKVLQARGGKDS-----TTTVIAGTYGYLAPEYAYSSK------ATTKCDVY  723 (840)
Q Consensus       680 fg~a~~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~  723 (840)
                      ||+|+.+...+....     ......+++.|+|||++...+      .+..+|-|
T Consensus       156 FGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~dgW  210 (365)
T PRK09188        156 FQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTPRERKILARKSLPSRIW  210 (365)
T ss_pred             CccceecccCcchhhhhhhhhhhhhhccCccCCcccCChhhhccccccccccCcE
Confidence            999998755432211     113567888999999885442      23446666

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.88  E-value=1.7e-22  Score=189.33  Aligned_cols=261  Identities=22%  Similarity=0.237  Sum_probs=193.3

Q ss_pred             HHhcCccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC-CCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH-KNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~  602 (840)
                      ...|..+++||+|+||.+|.| ...+|+.||||+=.....            ...+..|..+.+.++| ..|..+..|..
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~------------hpqL~yEskvY~iL~~g~GiP~i~~y~~   81 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK------------HPQLLYESKVYRILQGGVGIPHIRHYGT   81 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC------------CcchhHHHHHHHHhccCCCCchhhhhcc
Confidence            456888999999999999999 556899999997532221            2346678888888874 77888888888


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC---CCeeec
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY---QPKVAD  679 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~D  679 (840)
                      +.....+||+.+ |.||.+.+.-....++..+++-.+-|++.-++|+|.   ++++||||||+|.|..-+-   .+.++|
T Consensus        82 e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~---r~fiHRDIKPdNFLMGlgrh~~kl~LID  157 (341)
T KOG1163|consen   82 EKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHL---RNFIHRDIKPDNFLMGLGRHCNKLYLID  157 (341)
T ss_pred             ccccceeeeecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHh---hccccccCCccceeeccccccceEEEEe
Confidence            999999999999 899999988777789999999999999999999999   9999999999999997543   578999


Q ss_pred             ccchhhhhccCCCC----cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          680 FGIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       680 fg~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|+.+.+.....    .......||.+|.+-....+...+.+.|+-|+|.++.+.--|..||++..+..... .+.++
T Consensus       158 FGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~Q-KyEkI  236 (341)
T KOG1163|consen  158 FGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQ-KYEKI  236 (341)
T ss_pred             ccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHH-HHHHH
Confidence            99999886543221    23345679999999888777788999999999999999999999999754322111 11111


Q ss_pred             hhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      .........+++       +...+.++.-.+.-|-..--++-|...-+-+.+.-
T Consensus       237 ~EkK~s~~ie~L-------C~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrqlFri  283 (341)
T KOG1163|consen  237 SEKKMSTPIEVL-------CKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQLFRI  283 (341)
T ss_pred             HHhhcCCCHHHH-------hCCCcHHHHHHHHHHhhcCCCCCCcHHHHHHHHHH
Confidence            000000001111       11223344445556777777777877666655544

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.87  E-value=2.6e-21  Score=206.88  Aligned_cols=263  Identities=22%  Similarity=0.235  Sum_probs=189.8

Q ss_pred             hcCccCeeeccCCcEEEEEEeCCC--cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC----CCcceeeeE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNSG--EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH----KNIVKLYCY  600 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~  600 (840)
                      +|...+.||+|+||.||.|.....  ..+|+|.-.......          ...+..|+.++..+..    +++..+++.
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~----------~~~l~~E~~vl~~l~~~~~~~~~~~~~~~   88 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK----------PSVLKIEIQVLKKLEKKNGPSHFPKLLDH   88 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC----------CccchhHHHHHHHHhhhcCCCCCCEEEEe
Confidence            788899999999999999966543  578888764432111          1145677888887762    688889888


Q ss_pred             E-ecCccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC-----C
Q 003199          601 F-SSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-----Y  673 (840)
Q Consensus       601 ~-~~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-----~  673 (840)
                      + ......++||+.+ |.+|.+...... ..++..++..|+.|++.+|+++|+   .|++||||||.|+++...     .
T Consensus        89 G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~---~G~iHRDiKp~N~~~g~~~~~~~~  164 (322)
T KOG1164|consen   89 GRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHS---KGFIHRDIKPENFVVGQSSRSEVR  164 (322)
T ss_pred             ccCCCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHh---cCcccCCcCHHHeeecCCCCcccc
Confidence            8 5777889999988 889999886554 689999999999999999999999   999999999999999865     3


Q ss_pred             CCeeecccchh--hhhccCCC----Ccc-eecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCC
Q 003199          674 QPKVADFGIAK--VLQARGGK----DST-TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN  746 (840)
Q Consensus       674 ~~kl~Dfg~a~--~~~~~~~~----~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~  746 (840)
                      .+++.|||+|+  .+....+.    ... .....||..|+++....+...+.+.|+||++.++.|+..|..||.......
T Consensus       165 ~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~  244 (322)
T KOG1164|consen  165 TLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTD  244 (322)
T ss_pred             eEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccc
Confidence            58999999998  33222221    111 234669999999999999999999999999999999999999996542211


Q ss_pred             cchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCC
Q 003199          747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR  814 (840)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~  814 (840)
                      . .....+..   .   ...... .....+....   ++...+-..+..++|....+...+++.....
T Consensus       245 ~-~~~~~~~~---~---~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  245 L-KSKFEKDP---R---KLLTDR-FGDLKPEEFA---KILEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             h-HHHHHHHh---h---hhcccc-ccCCChHHHH---HHHHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence            1 11100000   0   000000 1112223333   3333444579999999999999987654443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.2e-22  Score=229.88  Aligned_cols=271  Identities=20%  Similarity=0.254  Sum_probs=198.4

Q ss_pred             ccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccce
Q 003199          530 EKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  608 (840)
                      ..+.+|.|++|.|+.+. .......+.|.+... ..   ...........+..|+.+-..+.|+|++..+..+.+.....
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~-~~---~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~  397 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVR-VK---PTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGIL  397 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcc-cC---CcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccch
Confidence            45689999999887763 334555666654321 10   11222333344888999999999999988887777766666


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhc
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA  688 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~  688 (840)
                      -+||||++ +|+..+.... .+...++..++.|+..|++|+|+   .||.|||+|++|++++.+|.+||+|||.+..+..
T Consensus       398 ~~mE~~~~-Dlf~~~~~~~-~~~~~e~~c~fKqL~~Gv~y~h~---~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~  472 (601)
T KOG0590|consen  398 QSMEYCPY-DLFSLVMSNG-KLTPLEADCFFKQLLRGVKYLHS---MGLAHRDLKLENLLVTENGILKIIDFGAASVFRY  472 (601)
T ss_pred             hhhhcccH-HHHHHHhccc-ccchhhhhHHHHHHHHHHHHHHh---cCceeccCccccEEEecCCceEEeecCcceeecc
Confidence            66999999 9999998763 57888999999999999999999   9999999999999999999999999999987754


Q ss_pred             cCCC-CcceecccccccccCccccccCCCCc-cccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          689 RGGK-DSTTTVIAGTYGYLAPEYAYSSKATT-KCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       689 ~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~-~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      .... .......+|+..|+|||.+.+..|++ ..||||.|+++..|.+|+.||......+.....    .....   ...
T Consensus       473 ~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~----~~~~~---~~~  545 (601)
T KOG0590|consen  473 PWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKT----NNYSD---QRN  545 (601)
T ss_pred             CcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhh----hcccc---ccc
Confidence            3221 24556788999999999999999876 589999999999999999999764333222100    00000   000


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcCCCCCC
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEADPCRFE  816 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~~~~~~  816 (840)
                      +......-..........++.++++.||.+|-|+++|++.  ++++.-|..+
T Consensus       546 ~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~~c~v~  597 (601)
T KOG0590|consen  546 IFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIECCHVD  597 (601)
T ss_pred             cccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcceEEec
Confidence            1111111223445566778889999999999999999865  5566666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.86  E-value=1.1e-21  Score=225.99  Aligned_cols=291  Identities=25%  Similarity=0.387  Sum_probs=149.8

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      .+.+.|+|++++++ .+|..+.  ++|+.|+|++|   ++..+|...+   ++|++|++++|.++ .+|..+.  .+|+.
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N---~LtsLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~  245 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNN---ELKSLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQE  245 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCC---CCCcCChhhc---cCCCEEECCCCccc-cCChhhh--ccccE
Confidence            34667777777777 5665543  46777777777   4555554322   35566666666555 3343332  24555


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccc
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS  176 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  176 (840)
                      |+|++|.+. .+|..+.  +                         +|+.|+|++|+|+ .+|..+.  ++|+.|+|++|+
T Consensus       246 L~Ls~N~L~-~LP~~l~--s-------------------------~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~  294 (754)
T PRK15370        246 MELSINRIT-ELPERLP--S-------------------------ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNS  294 (754)
T ss_pred             EECcCCccC-cCChhHh--C-------------------------CCCEEECcCCccC-ccccccC--CCCcEEECCCCc
Confidence            555555555 3443332  2                         4455555555554 2333332  345555555555


Q ss_pred             cccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcc
Q 003199          177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS  256 (840)
Q Consensus       177 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  256 (840)
                      |+.++ ..+  .++|+.|++++|+++. +|..+.  ++|+.|++++|.+++ +|                        ..
T Consensus       295 Lt~LP-~~l--p~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP------------------------~~  343 (754)
T PRK15370        295 IRTLP-AHL--PSGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LP------------------------AS  343 (754)
T ss_pred             cccCc-ccc--hhhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CC------------------------hh
Confidence            55322 222  1346666666666653 333222  456666666666652 12                        11


Q ss_pred             cccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhh----ccc
Q 003199          257 LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI----YRA  332 (840)
Q Consensus       257 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~l  332 (840)
                      +  .++|+.|++++|+|+ .+|..+.  ++|+.|+|++|+++..++ .+.  ..|+.|++++|+|. .+|..+    ..+
T Consensus       344 l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~-~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~  414 (754)
T PRK15370        344 L--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPE-NLP--AALQIMQASRNNLV-RLPESLPHFRGEG  414 (754)
T ss_pred             h--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCH-hHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence            1  135566666666665 3444332  456666666666664322 222  25666777777776 344433    334


Q ss_pred             CcccEEEcCCCccCCCCCCcccCccccchhcccCCccCC-CcchhcccccCCCEEECcCccccccC
Q 003199          333 ISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNS-SIPNSLSSLKSLNVLDLSNNLLTGYI  397 (840)
Q Consensus       333 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~  397 (840)
                      +.+..|+|.+|+++.      ..+.+|+.| ++.+.+.| .++...+.+.+++....-.+.+++++
T Consensus       415 ~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl  473 (754)
T PRK15370        415 PQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVRVTRPLHQAVQGWL  473 (754)
T ss_pred             CCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccccccccccchHHHHHhccC
Confidence            667788888887762      345556666 44455543 22333334444444333444444433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.85  E-value=6.6e-22  Score=221.40  Aligned_cols=255  Identities=22%  Similarity=0.262  Sum_probs=185.6

Q ss_pred             hcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      ++...+.+|++.|=+|.+|+...|. |+||++.+......-      ...++..+|++ ....+|||.+++.-+......
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL------~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kA   95 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISL------RPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKA   95 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCc------hHHHHHHHHHH-HHhhcCCcccchHHHHHhhHH
Confidence            4556778999999999999888777 999999766544322      11233334455 555689999999888878888


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .|||-+|+ .-+|+|.+..+. -+...+...|+.|++.|+..+|.   .||+|||||.+|||+++..-+.|+||..-+..
T Consensus        96 AylvRqyv-khnLyDRlSTRP-FL~~iEKkWiaFQLL~al~qcH~---~gVcHGDIKsENILiTSWNW~~LtDFAsFKPt  170 (1431)
T KOG1240|consen   96 AYLVRQYV-KHNLYDRLSTRP-FLVLIEKKWIAFQLLKALSQCHK---LGVCHGDIKSENILITSWNWLYLTDFASFKPT  170 (1431)
T ss_pred             HHHHHHHH-hhhhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHH---cCccccccccceEEEeeechhhhhcccccCCc
Confidence            89999999 559999998764 46677888999999999999999   99999999999999999999999999877665


Q ss_pred             hccCCCCcceeccccc----ccccCccccccC-----------CCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchh
Q 003199          687 QARGGKDSTTTVIAGT----YGYLAPEYAYSS-----------KATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII  750 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt----~~y~aPE~~~~~-----------~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~  750 (840)
                      .-+.+.......+..|    ..|+|||.+...           ..+++.||||+||+++|+++ |++||.-.     ++.
T Consensus       171 YLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS-----QL~  245 (1431)
T KOG1240|consen  171 YLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS-----QLL  245 (1431)
T ss_pred             cCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH-----HHH
Confidence            4433333334333333    479999987542           25788999999999999999 78888631     111


Q ss_pred             hhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      .+   +.........++. ++.+      ..+..++..|++.||++|.++++.++.-..
T Consensus       246 aY---r~~~~~~~e~~Le-~Ied------~~~Rnlil~Mi~rdPs~RlSAedyL~~yrG  294 (1431)
T KOG1240|consen  246 AY---RSGNADDPEQLLE-KIED------VSLRNLILSMIQRDPSKRLSAEDYLQKYRG  294 (1431)
T ss_pred             hH---hccCccCHHHHHH-hCcC------ccHHHHHHHHHccCchhccCHHHHHHhhhc
Confidence            11   1111111111111 1111      145678889999999999999999988443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.84  E-value=1.2e-19  Score=197.23  Aligned_cols=263  Identities=31%  Similarity=0.375  Sum_probs=195.7

Q ss_pred             cCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCC-CcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK-NIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~-niv~l~~~~~~~~~  606 (840)
                      |...+.||.|+||.||++...  ..+|+|.+.......       ......+.+|+.+++.+.|+ +++++.+.+.....
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~-------~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~   72 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESK-------SKEVERFLREIQILASLNHPPNIVKLYDFFQDEGS   72 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccc-------hhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCE
Confidence            456678999999999999776  789999885443221       13467789999999999988 79999999977777


Q ss_pred             ceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-CCeeecccch
Q 003199          607 NLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIA  683 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~Dfg~a  683 (840)
                      .+++++|+.++++.+.+....  ..+.......++.+++.+++|+|+   .+++|||+||+||+++..+ .++++|||.+
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~---~~~~hrd~kp~nil~~~~~~~~~l~dfg~~  149 (384)
T COG0515          73 LYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS---KGIIHRDIKPENILLDRDGRVVKLIDFGLA  149 (384)
T ss_pred             EEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeecCCCCeEEEeccCcc
Confidence            899999999999997776653  268889999999999999999999   8999999999999999988 7999999999


Q ss_pred             hhhhccCCCC---cceecccccccccCcccccc---CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          684 KVLQARGGKD---STTTVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       684 ~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +.........   .......||..|+|||.+.+   ..+....|+||+|++++++++|..||............+.....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  229 (384)
T COG0515         150 KLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILE  229 (384)
T ss_pred             eecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHh
Confidence            8654322111   13467789999999999987   57899999999999999999999997653221000011100000


Q ss_pred             ccccchhhhcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 DTKEGIMEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....    .......... ......+.+++..|+..+|..|.++.+....
T Consensus       230 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         230 LPTP----SLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             cCCc----ccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            0000    0000000000 1223456677789999999999999887765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=1.1e-20  Score=217.67  Aligned_cols=246  Identities=23%  Similarity=0.404  Sum_probs=143.6

Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEe
Q 003199           93 SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQL  172 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  172 (840)
                      +...|+|+++.++ .+|..+.  ++|+.|+|++|+  ...+|..+.  .+|++|+|++|+++ .+|..+.  ++|+.|+|
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~--LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNE--LKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCC--CCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            4566666666666 4554442  356666666665  224554432  36667777777666 3444332  35677777


Q ss_pred             eccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhccccccccc
Q 003199          173 YNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV  252 (840)
Q Consensus       173 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  252 (840)
                      ++|++..+ |..+.  .+|+.|+|++|+|+ .+|..+.  .+|+.|+|++|++++ +|..+                   
T Consensus       249 s~N~L~~L-P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l-------------------  302 (754)
T PRK15370        249 SINRITEL-PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL-------------------  302 (754)
T ss_pred             cCCccCcC-ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc-------------------
Confidence            77776633 33332  46777777777776 3454443  367777777776663 22211                   


Q ss_pred             CCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhccc
Q 003199          253 LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRA  332 (840)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  332 (840)
                           .  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.+++ +|..+  .++|+.|+|++|+|+ .+|..+.  
T Consensus       303 -----p--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--  366 (754)
T PRK15370        303 -----P--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--  366 (754)
T ss_pred             -----h--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--
Confidence                 1  23444555555554 2333222  456666666666654 23323  256777777777776 4555443  


Q ss_pred             CcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhc----ccccCCCEEECcCcccc
Q 003199          333 ISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSL----SSLKSLNVLDLSNNLLT  394 (840)
Q Consensus       333 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~l~~N~l~  394 (840)
                      ++|+.|+|++|+|+ .+|..+.  ..|+.|++++|+|+ .+|..+    ..++++..|+|.+|+|+
T Consensus       367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            47788888888887 4555443  36888888888887 445443    34577888888888887

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.82  E-value=3.3e-20  Score=199.53  Aligned_cols=219  Identities=26%  Similarity=0.383  Sum_probs=166.4

Q ss_pred             HhccCCCCcceeeeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCe-EecCCCC
Q 003199          586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPI-IHRDIKS  664 (840)
Q Consensus       586 l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~i-vH~Dlk~  664 (840)
                      |+.+.|.|+.+++|.+.++...+.|.+||..|+|.+.+......++|.-...++++++.||+|+|.   .+| +|+.+++
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~---s~i~~hg~l~s   77 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHN---SPIGYHGALKS   77 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhc---Ccceeeeeecc
Confidence            356789999999999999999999999999999999999887889999999999999999999998   444 9999999


Q ss_pred             CCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccC-------CCCccccchhHHHHHHHHHhCCC
Q 003199          665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-------KATTKCDVYSFGVVLMELITGRK  737 (840)
Q Consensus       665 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-------~~~~~~Dv~slG~il~el~tg~~  737 (840)
                      +|+++|..+.+|++|||+....... ..........-..-|.|||.+.+.       ..+.++||||||++++|+++.+.
T Consensus        78 ~nClvd~~w~lklt~~Gl~~~~~~~-~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~  156 (484)
T KOG1023|consen   78 SNCLVDSRWVLKLTDFGLNSLLEET-AEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSG  156 (484)
T ss_pred             ccceeeeeEEEEechhhhccccccc-ccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccC
Confidence            9999999999999999998765321 111111222234569999988663       24678999999999999999999


Q ss_pred             CCCCCCCCCcc--hhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          738 PVEDDFGDNKN--IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       738 p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                      ||+........  ....++  .    .......+.+.... +....+..++.+||..+|.+||++++|-..++.+.....
T Consensus       157 ~~~~~~~~~~~~eii~~~~--~----~~~~~~rP~i~~~~-e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~~~  229 (484)
T KOG1023|consen  157 PFDLRNLVEDPDEIILRVK--K----GGSNPFRPSIELLN-ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKGGS  229 (484)
T ss_pred             ccccccccCChHHHHHHHH--h----cCCCCcCcchhhhh-hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhccccc
Confidence            99864333222  111111  0    01111111111110 233468889999999999999999999999988777653

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.82  E-value=1.7e-20  Score=184.26  Aligned_cols=183  Identities=11%  Similarity=0.114  Sum_probs=134.5

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .-+..+|...+.+|.|+||.||.++. ++..+|||.+.......... ...-.....+.+|+..+.++.|++|..+..++
T Consensus        27 ~~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~-~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~  104 (232)
T PRK10359         27 DFLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERF-LKSFVKGDYYENLIVQTDRVRSEGLASLNDFY  104 (232)
T ss_pred             HHhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHH-HHhhhhhHHHHHHHHHHHHHHHCCCCcceEee
Confidence            34456788999999999999999866 47789999996543221000 00000123368999999999999999998886


Q ss_pred             ecC--------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          602 SSL--------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       602 ~~~--------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      ...        ...++||||++|.+|.++..     ++.    ....+++.++..+|.   .|++|||+||+||+++.++
T Consensus       105 ~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~-----~~~----~~~~~i~~~l~~lH~---~gi~H~Dikp~Nili~~~g  172 (232)
T PRK10359        105 LLAERKTLRYAHTYIMLIEYIEGVELNDMPE-----ISE----DVKAKIKASIESLHQ---HGMVSGDPHKGNFIVSKNG  172 (232)
T ss_pred             eecccccccccCCeEEEEEEECCccHHHhhh-----ccH----HHHHHHHHHHHHHHH---cCCccCCCChHHEEEeCCC
Confidence            532        35789999999999987732     222    245699999999999   9999999999999999988


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT  734 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t  734 (840)
                       ++++|||..+.....    ...           ..+.....+..++|+||||+.+.....
T Consensus       173 -i~liDfg~~~~~~e~----~a~-----------d~~vler~y~~~~di~~lg~~~~~~~~  217 (232)
T PRK10359        173 -LRIIDLSGKRCTAQR----KAK-----------DRIDLERHYGIKNEIKDLGYYLLIYKK  217 (232)
T ss_pred             -EEEEECCCcccccch----hhH-----------HHHHHHhHhcccccccceeEeehHHHH
Confidence             999999988654221    000           113344556789999999998876543

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.82  E-value=1.1e-19  Score=177.50  Aligned_cols=148  Identities=16%  Similarity=0.159  Sum_probs=109.8

Q ss_pred             CeeeccCCcEEEEEEeCCCcEEEEEEecccccccccC----------------chhhHHHHHHHHHHHHHHhccCCCCcc
Q 003199          532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSAS----------------DTDQLQLDKGLKTEVETLGNIRHKNIV  595 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~----------------~~~~~~~~~~~~~E~~~l~~l~h~niv  595 (840)
                      ..||+|++|.||+|...+|+.||||+++.........                .............|++.+.++.++++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            5799999999999987789999999996543211100                000001123345699999999887764


Q ss_pred             eeeeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHH-hhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          596 KLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL-HHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       596 ~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~L-H~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      ....+..  ...++||||++++++....... ..+++.+...++.|++.+|+|+ |+   .+|+||||||+||+++ ++.
T Consensus        83 ~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~-~~~~~~~~~~i~~qi~~~L~~l~H~---~giiHrDlkP~NIli~-~~~  155 (190)
T cd05147          83 CPEPILL--KSHVLVMEFIGDDGWAAPRLKD-APLSESKARELYLQVIQIMRILYQD---CRLVHADLSEYNLLYH-DGK  155 (190)
T ss_pred             CCcEEEe--cCCEEEEEEeCCCCCcchhhhc-CCCCHHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEE-CCc
Confidence            4333222  2338999999988776543222 3688999999999999999999 67   8999999999999998 478


Q ss_pred             Ceeecccchhhh
Q 003199          675 PKVADFGIAKVL  686 (840)
Q Consensus       675 ~kl~Dfg~a~~~  686 (840)
                      ++++|||+|...
T Consensus       156 v~LiDFG~a~~~  167 (190)
T cd05147         156 LYIIDVSQSVEH  167 (190)
T ss_pred             EEEEEccccccC
Confidence            999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.79  E-value=6.4e-19  Score=168.85  Aligned_cols=191  Identities=15%  Similarity=0.080  Sum_probs=138.3

Q ss_pred             ccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecCccce
Q 003199          530 EKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~  608 (840)
                      ....|++|+||+||.+.. .+.+++.+.+......      ........+.+|+++++++. |+++++++++    ...+
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~------~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~   74 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWW------LRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRH   74 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeecccccchhh------hhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEE
Confidence            456899999999998766 5788887766322210      01112335889999999995 5889999886    3468


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCC-CCCCEEEcCCCCCeeecccchhhhh
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDI-KSTNILLDVNYQPKVADFGIAKVLQ  687 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl-k~~Nill~~~~~~kl~Dfg~a~~~~  687 (840)
                      ++|||++|.+|.+.....        ...++.+++.+++++|+   .||+|||| ||+|||++.++.++|+|||+|....
T Consensus        75 lvmeyI~G~~L~~~~~~~--------~~~~~~qi~~~L~~lH~---~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~  143 (218)
T PRK12274         75 LDRSYLAGAAMYQRPPRG--------DLAYFRAARRLLQQLHR---CGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGN  143 (218)
T ss_pred             EEEeeecCccHHhhhhhh--------hHHHHHHHHHHHHHHHH---CcCccCCCCCcceEEEcCCCCEEEEECCCceecC
Confidence            999999999987544221        23577899999999999   99999999 7999999999999999999998654


Q ss_pred             ccCCC----C-c-----ceecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCCCC
Q 003199          688 ARGGK----D-S-----TTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDD  742 (840)
Q Consensus       688 ~~~~~----~-~-----~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~  742 (840)
                      ..+..    . .     .......++.|++|+...-  ..--.+.+.++-|.-+|.++||+.|.-.+
T Consensus       144 ~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        144 PRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence            32210    0 0     0011235677777774321  22235789999999999999999887543

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.79  E-value=9.5e-19  Score=171.82  Aligned_cols=149  Identities=19%  Similarity=0.211  Sum_probs=112.4

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccC----------------chhhHHHHHHHHHHHHHHhccCCCCc
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSAS----------------DTDQLQLDKGLKTEVETLGNIRHKNI  594 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~----------------~~~~~~~~~~~~~E~~~l~~l~h~ni  594 (840)
                      ...||+|++|.||+|...+|+.||||++..........                ..........+..|++.+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            35799999999999987789999999986653211000                00111123345689999999999987


Q ss_pred             ceeeeEEecCccceEEEeecCCCChHHH-hhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          595 VKLYCYFSSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       595 v~l~~~~~~~~~~~lV~e~~~~gsL~~~-l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      .....+...  ..++||||++++++... +..  ..++..+...++.+++.++.++|+.  .||+||||||+||+++ ++
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~--~~~~~~~~~~i~~~l~~~l~~lH~~--~givHrDlkP~NIll~-~~  154 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKD--VPLEEEEAEELYEQVVEQMRRLYQE--AGLVHGDLSEYNILYH-DG  154 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhh--ccCCHHHHHHHHHHHHHHHHHHHHh--CCEecCCCChhhEEEE-CC
Confidence            554444332  24899999998855433 433  2567888999999999999999984  6999999999999999 78


Q ss_pred             CCeeecccchhhh
Q 003199          674 QPKVADFGIAKVL  686 (840)
Q Consensus       674 ~~kl~Dfg~a~~~  686 (840)
                      .++|+|||+++..
T Consensus       155 ~~~liDFG~a~~~  167 (190)
T cd05145         155 KPYIIDVSQAVEL  167 (190)
T ss_pred             CEEEEEcccceec
Confidence            9999999999765

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.79  E-value=4.6e-20  Score=197.60  Aligned_cols=187  Identities=30%  Similarity=0.403  Sum_probs=158.0

Q ss_pred             eeccCCcEEEEEE----eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecCccce
Q 003199          534 VGQGGSGTVYKID----LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       534 lg~G~~g~Vy~~~----~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~  608 (840)
                      +|.|+||.|+.+.    ...|..+|+|+.+..........        ....|..++..++ ||.+|++.-++..+...+
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~--------~t~~er~il~~~~~~~f~v~lhyafqt~~kl~   73 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRT--------HTKQERIILAFVHNTPFLVKLHYAFQTDGKLY   73 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhccccccccccccc--------ccccHHHHHhhccCCCceeeeeeeeccccchh
Confidence            7899999999852    23477899998876654432221        2344667777776 999999999999999999


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhc
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA  688 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~  688 (840)
                      ++++|..+|++...+.... .+++.....+...++-+++++|+   .+++|||+|++||+++.+|++++.|||+++...+
T Consensus        74 l~ld~~rgg~lft~l~~~~-~f~~~~~~~~~aelaLald~lh~---l~iiyrd~k~enilld~~Ghi~~tdfglske~v~  149 (612)
T KOG0603|consen   74 LILDFLRGGDLFTRLSKEV-MFDELDVAFYLAELALALDHLHK---LGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVK  149 (612)
T ss_pred             HhhhhcccchhhhccccCC-chHHHHHHHHHHHHHHHHhhcch---hHHHHhcccccceeecccCccccCCchhhhHhHh
Confidence            9999999999999988765 67888888888899999999999   9999999999999999999999999999987654


Q ss_pred             cCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCC
Q 003199          689 RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED  741 (840)
Q Consensus       689 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  741 (840)
                      ..       ..+||..|||||++.  ....++|.||||++++||+||..||..
T Consensus       150 ~~-------~~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  150 EK-------IACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             hh-------hcccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence            21       128999999999887  678899999999999999999999974

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=5.3e-21  Score=205.87  Aligned_cols=55  Identities=20%  Similarity=0.261  Sum_probs=29.6

Q ss_pred             EEecCcccc-ccCCccccCCCCCcEEEccCCccccc----CchhhhcCCCCCeeecccCc
Q 003199           73 MVLATCALH-GQIPASIGNVTSLTDLELTGNFITGH----IPPEIGLLKNLRQLELYYNQ  127 (840)
Q Consensus        73 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~  127 (840)
                      |+|..+.+. ......+..+.+|+.|++++|.+++.    ++..+...++|++|+++.+.
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~   62 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE   62 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc
Confidence            455555554 23334445555666666666666421    33344455556666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=6.9e-21  Score=169.28  Aligned_cols=163  Identities=31%  Similarity=0.540  Sum_probs=99.5

Q ss_pred             cCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceE
Q 003199          187 NSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRF  266 (840)
Q Consensus       187 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  266 (840)
                      ++..++.|.|++|+++ .+|+.+..+.+|+.|++++|+|+                         .+|..++.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------------------------~lp~~issl~klr~l   84 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------------------------ELPTSISSLPKLRIL   84 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------------------------hcChhhhhchhhhhe
Confidence            3445555556666665 44555555666666666666555                         455566666777777


Q ss_pred             EeeCceeeccCCccccCCCcccEEeccCCcccc-cCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCcc
Q 003199          267 RVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG-PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLL  345 (840)
Q Consensus       267 ~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  345 (840)
                      +++-|++. .+|.+|+.+|.|+.|||.+|.+.. ..|..|-.+..|+.|+|++|.+. .+|..++++.+|+.|.+..|.+
T Consensus        85 nvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen   85 NVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             ecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            77777776 677777777777777777777653 34455555566666666666665 5555666666666666666655


Q ss_pred             CCCCCCcccCccccchhcccCCccCCCcchhccc
Q 003199          346 SGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSS  379 (840)
Q Consensus       346 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  379 (840)
                      - .+|.+++.+.+|++|++.+|+++ .+|..+++
T Consensus       163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             h-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            5 45556666666666666666665 44444443

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.77  E-value=2.1e-18  Score=174.70  Aligned_cols=232  Identities=21%  Similarity=0.242  Sum_probs=144.9

Q ss_pred             CccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC----------CCccee
Q 003199          529 TEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH----------KNIVKL  597 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h----------~niv~l  597 (840)
                      ...+.||.|+++.||.+.. .+|+++|||++......       .....+.+++|.-....+.+          -.++.-
T Consensus        15 ~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~-------~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P   87 (288)
T PF14531_consen   15 VRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADA-------SANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVP   87 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTT-------HTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---
T ss_pred             EEccccccCCceEEEEEEEccCCceEEEEEEeccccc-------chHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEee
Confidence            3456899999999999955 57999999998665521       12335666667655555332          112211


Q ss_pred             eeE---------EecC---c-----cceEEEeecCCCChHHHhhc---CCC---CCChHHHHHHHHHHHHHHHHHhhcCC
Q 003199          598 YCY---------FSSL---Y-----CNLLVYEYMPNGNLWDALHK---GLV---HLDWPTRHKIAFGVAQGLAYLHHGLL  654 (840)
Q Consensus       598 ~~~---------~~~~---~-----~~~lV~e~~~~gsL~~~l~~---~~~---~~~~~~~~~i~~~i~~~l~~LH~~~~  654 (840)
                      ++.         +...   .     ..+++|+-+ .+||.+.+..   ...   .+....+..+..|+++.+++||+   
T Consensus        88 ~d~~~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~---  163 (288)
T PF14531_consen   88 LDLLRIPGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHS---  163 (288)
T ss_dssp             SEEEEETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             eEEEEEcCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhh---
Confidence            111         1111   1     225677777 6788776542   211   23344566777899999999999   


Q ss_pred             CCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccC--------CCCccccchhHH
Q 003199          655 SPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS--------KATTKCDVYSFG  726 (840)
Q Consensus       655 ~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--------~~~~~~Dv~slG  726 (840)
                      .|+||+||+|+|++++++|.++|+||+.......      .......+..|.+||.....        .++.+.|.|++|
T Consensus       164 ~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~------~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG  237 (288)
T PF14531_consen  164 YGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGT------RYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLG  237 (288)
T ss_dssp             TTEEEST-SGGGEEE-TTS-EEE--GGGEEETTE------EEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHH
T ss_pred             cceEecccceeeEEEcCCCCEEEcChHHHeecCc------eeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHH
Confidence            9999999999999999999999999988765422      11113455789999976432        478899999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCC
Q 003199          727 VVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR  797 (840)
Q Consensus       727 ~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R  797 (840)
                      +++|.|.+|+.||..........  |                 .+.... +.+..+..|+..+++.+|.+|
T Consensus       238 ~~ly~lWC~~lPf~~~~~~~~~~--~-----------------~f~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  238 ITLYSLWCGRLPFGLSSPEADPE--W-----------------DFSRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HHHHHHHHSS-STCCCGGGSTSG--G-----------------GGTTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             HHHHHHHHccCCCCCCCcccccc--c-----------------cchhcC-CcCHHHHHHHHHHccCCcccC
Confidence            99999999999997531111100  0                 222222 555667778889999999988

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=7.8e-21  Score=168.96  Aligned_cols=166  Identities=32%  Similarity=0.519  Sum_probs=141.5

Q ss_pred             CCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCccc
Q 003199          209 LGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVS  288 (840)
Q Consensus       209 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  288 (840)
                      +..+.+.+.|.|++|+++                         .+|..++.+.+|+.|++++|+++ .+|..+.++++|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-------------------------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr   82 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-------------------------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLR   82 (264)
T ss_pred             ccchhhhhhhhcccCcee-------------------------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhh
Confidence            345566677777777776                         56667888899999999999998 7888999999999


Q ss_pred             EEeccCCcccccCCcccCCCCCCceeecccceeee-ccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCC
Q 003199          289 IIDLSYNSFSGPIANTVGNARNLSELFMQRNQISG-FIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSN  367 (840)
Q Consensus       289 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  367 (840)
                      .|+++-|++. ..|..|+.++.|+.|+|+.|.+.. .+|..|+.+..|+.|+|+.|.+. .+|..++++++|+.|.+..|
T Consensus        83 ~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen   83 ILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             heecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence            9999999997 778889999999999999998864 67888888999999999999998 78888999999999999999


Q ss_pred             ccCCCcchhcccccCCCEEECcCccccccCCchhhcc
Q 003199          368 KLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL  404 (840)
Q Consensus       368 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  404 (840)
                      .+- ..|..++.++.|++|.+.+|+|+ .+|+.++.+
T Consensus       161 dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  161 DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             chh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            987 78888999999999999999998 777776655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=1.8e-20  Score=201.74  Aligned_cols=59  Identities=19%  Similarity=0.115  Sum_probs=35.2

Q ss_pred             EEeCCCCCCCccCCCCcccccccccccEEEecCccccc----cCCccccCCCCCcEEEccCCccc
Q 003199           45 VLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHG----QIPASIGNVTSLTDLELTGNFIT  105 (840)
Q Consensus        45 ~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~  105 (840)
                      .|+|+++.+. ...+ ...|..+..|+.|++++|.++.    .++..+...++|++|+++++.+.
T Consensus         2 ~l~L~~~~l~-~~~~-~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           2 QLSLKGELLK-TERA-TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG   64 (319)
T ss_pred             ccccccCccc-ccch-HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence            3556665321 1111 2345566778888888887743    24455666677788888777766

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=3.8e-18  Score=171.43  Aligned_cols=198  Identities=25%  Similarity=0.302  Sum_probs=135.7

Q ss_pred             CCCCcceeeeEEecC---------------------------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHH
Q 003199          590 RHKNIVKLYCYFSSL---------------------------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV  642 (840)
Q Consensus       590 ~h~niv~l~~~~~~~---------------------------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i  642 (840)
                      +|||||++.++|.+.                           ...|+||..+ ..+|..++..+  ..+.....-+..|+
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY-~~tLr~yl~~~--~~s~r~~~~~laQl  350 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRY-RQTLREYLWTR--HRSYRTGRVILAQL  350 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcc-hhhHHHHHhcC--CCchHHHHHHHHHH
Confidence            599999998776332                           2457888887 45898888775  35556677788999


Q ss_pred             HHHHHHHhhcCCCCeEecCCCCCCEEE--cCCC--CCeeecccchhhhhccC---CCCcceecccccccccCccccccCC
Q 003199          643 AQGLAYLHHGLLSPIIHRDIKSTNILL--DVNY--QPKVADFGIAKVLQARG---GKDSTTTVIAGTYGYLAPEYAYSSK  715 (840)
Q Consensus       643 ~~~l~~LH~~~~~~ivH~Dlk~~Nill--~~~~--~~kl~Dfg~a~~~~~~~---~~~~~~~~~~gt~~y~aPE~~~~~~  715 (840)
                      ++|+.|||.   +||.|||+|++|||+  |+|+  ..+|+|||++---...+   ..........|...-||||+....+
T Consensus       351 LEav~hL~~---hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~P  427 (598)
T KOG4158|consen  351 LEAVTHLHK---HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVP  427 (598)
T ss_pred             HHHHHHHHH---ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCC
Confidence            999999999   999999999999999  3444  35889999873221110   0112223345777899999875432


Q ss_pred             ------CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHc
Q 003199          716 ------ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRC  789 (840)
Q Consensus       716 ------~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c  789 (840)
                            ...|+|.|+.|.+.||+++...||.......          .+... .++-   .++.-.......+.+++...
T Consensus       428 Gp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~----------L~~r~-Yqe~---qLPalp~~vpp~~rqlV~~l  493 (598)
T KOG4158|consen  428 GPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEML----------LDTRT-YQES---QLPALPSRVPPVARQLVFDL  493 (598)
T ss_pred             CCceeeccchhhhhhhhhhHHHHhccCCcccccchhe----------echhh-hhhh---hCCCCcccCChHHHHHHHHH
Confidence                  2468999999999999999999997632110          11111 1111   12222223344566777789


Q ss_pred             cCCCCCCCCCHHHHHHHh
Q 003199          790 TSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       790 l~~dP~~Rps~~evl~~L  807 (840)
                      ++.||.+|++..-.-..|
T Consensus       494 L~r~pskRvsp~iAANvl  511 (598)
T KOG4158|consen  494 LKRDPSKRVSPNIAANVL  511 (598)
T ss_pred             hcCCccccCCccHHHhHH
Confidence            999999999876555443

>PRK10345 hypothetical protein; Provisional

Probab=99.72  E-value=3.5e-17  Score=160.90  Aligned_cols=136  Identities=17%  Similarity=0.239  Sum_probs=104.5

Q ss_pred             CccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-----CCCCcceeeeEEec
Q 003199          529 TEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-----RHKNIVKLYCYFSS  603 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-----~h~niv~l~~~~~~  603 (840)
                      ...+.||+|+||.||. ...++.. +||++.....          ...+.+.+|+.+++.+     .||||++++|++.+
T Consensus         5 ~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~----------~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et   72 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGD----------GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVET   72 (210)
T ss_pred             CCcceecCCCceEEEE-CCCCcCe-EEEEEecccc----------chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEe
Confidence            4557899999999996 4445555 6888744221          1245689999999999     57999999999988


Q ss_pred             Cc---cce-EEEee--cCCCChHHHhhcCCCCCChHHHHHHHHHHHHHH-HHHhhcCCCCeEecCCCCCCEEEcC----C
Q 003199          604 LY---CNL-LVYEY--MPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL-AYLHHGLLSPIIHRDIKSTNILLDV----N  672 (840)
Q Consensus       604 ~~---~~~-lV~e~--~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l-~~LH~~~~~~ivH~Dlk~~Nill~~----~  672 (840)
                      ..   ..+ +|+||  +.+|+|.+++.+.  .+++.  ..++.+++.++ +|||+   ++||||||||+||+++.    +
T Consensus        73 ~~g~g~v~~~I~e~~G~~~~tL~~~l~~~--~~~e~--~~~~~~~L~~l~~yLh~---~~IvhrDlKp~NILl~~~~~~~  145 (210)
T PRK10345         73 DCGTGYVYDVIADFDGKPSITLTEFAEQC--RYEED--VAQLRQLLKKLKRYLLD---NRIVTMELKPQNILCQRISESE  145 (210)
T ss_pred             CCCCeEEEEEEecCCCCcchhHHHHHHcc--cccHh--HHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEeccCCCC
Confidence            64   323 78999  5579999999764  35554  35677888777 99999   99999999999999974    3


Q ss_pred             CCCeeecccch
Q 003199          673 YQPKVADFGIA  683 (840)
Q Consensus       673 ~~~kl~Dfg~a  683 (840)
                      +.++|+||+-+
T Consensus       146 ~~~~LiDg~G~  156 (210)
T PRK10345        146 VIPVVCDNIGE  156 (210)
T ss_pred             CcEEEEECCCC
Confidence            47999995443

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=2.3e-17  Score=189.87  Aligned_cols=250  Identities=19%  Similarity=0.195  Sum_probs=176.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.|.+.+.||+|+||+||+|...+|+.||+|+=+.+..-       .-....+++..++ .  .--+-|..+..++.-.+
T Consensus       698 ~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~W-------EfYI~~q~~~RLk-~--~~~~~~~~~~~a~~~~~  767 (974)
T KOG1166|consen  698 EKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPW-------EFYICLQVMERLK-P--QMLPSIMHISSAHVFQN  767 (974)
T ss_pred             eeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCce-------eeeehHHHHHhhc-h--hhhcchHHHHHHHccCC
Confidence            346677889999999999997777999999985433321       1111222222222 0  01234555555666667


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-------CCCCeee
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-------NYQPKVA  678 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-------~~~~kl~  678 (840)
                      ..++|+||.+.|+|.+++... ...+|.-+..+..|+++.+++||.   .+|||+||||+|.|+..       ...++|+
T Consensus       768 ~S~lv~ey~~~Gtlld~~N~~-~~m~e~lv~~~~~qml~ive~lH~---~~IIHgDiKPDNfll~~~~~~~~~~~~l~lI  843 (974)
T KOG1166|consen  768 ASVLVSEYSPYGTLLDLINTN-KVMDEYLVMFFSCQMLRIVEHLHA---MGIIHGDIKPDNFLLRREICADSDSKGLYLI  843 (974)
T ss_pred             cceeeeeccccccHHHhhccC-CCCCchhhhHHHHHHHHHHHHHHh---cceecccCCcceeEeecccCCCCcccceEEE
Confidence            778999999999999999854 478999999999999999999999   99999999999999942       3358999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||.+-.+..- .........++|-.+-.+|+..++.+++..|-|.+..+++-|+.|+..-.  .               
T Consensus       844 DfG~siDm~lf-p~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~q~--~---------------  905 (974)
T KOG1166|consen  844 DFGRSIDMKLF-PDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYMEV--K---------------  905 (974)
T ss_pred             ecccceeeeEc-CCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHHh--c---------------
Confidence            99999665432 12245567788999999999999999999999999999999999975310  0               


Q ss_pred             cccchhhhcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          759 TKEGIMEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                        .+....++.+++..+ .+.+.+++.+   ++.+|-..=|...++...+++.-.
T Consensus       906 --~g~~~~~~~~~~Ry~~~~~W~~~F~~---lLN~~~~~~p~l~~lr~~~~~~~~  955 (974)
T KOG1166|consen  906 --NGSSWMVKTNFPRYWKRDMWNKFFDL---LLNPDCDTLPNLQELRTELEEVLA  955 (974)
T ss_pred             --CCcceeccccchhhhhHHHHHHHHHH---HhCcCcccchhHHHHHHHHHHHHH
Confidence              000111112222222 3455566664   444555555777777777766543

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.72  E-value=4.3e-17  Score=163.83  Aligned_cols=142  Identities=20%  Similarity=0.304  Sum_probs=116.3

Q ss_pred             CeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEE
Q 003199          532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVY  611 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~  611 (840)
                      +.||+|++|.||+|.. +|..|+||+........  ...+.......+.+|++++..+.|+++.....++......++||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~--~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~   78 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRH--PELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVM   78 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcC--hHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEE
Confidence            5799999999999987 57889999864332111  11112223456889999999999999888777777777889999


Q ss_pred             eecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          612 EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       612 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ||++|++|.+.+....    + ++..++.+++.++.++|+   .+++|||++|+||+++ ++.++++|||.+..
T Consensus        79 e~~~G~~L~~~~~~~~----~-~~~~i~~~i~~~l~~lH~---~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         79 EYIEGEPLKDLINSNG----M-EELELSREIGRLVGKLHS---AGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEeCCcCHHHHHHhcc----H-HHHHHHHHHHHHHHHHHh---CCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            9999999999987532    2 888999999999999999   9999999999999999 78899999999864

>smart00090 RIO RIO-like kinase

Probab=99.70  E-value=1.1e-16  Score=161.66  Aligned_cols=150  Identities=17%  Similarity=0.165  Sum_probs=112.1

Q ss_pred             cCccCeeeccCCcEEEEEE--eCCCcEEEEEEeccccccccc--------------CchhhHHHHHHHHHHHHHHhccCC
Q 003199          528 MTEKNKVGQGGSGTVYKID--LNSGEVVAVKKLWSQRTKVSA--------------SDTDQLQLDKGLKTEVETLGNIRH  591 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~--~~~~~~vavK~~~~~~~~~~~--------------~~~~~~~~~~~~~~E~~~l~~l~h  591 (840)
                      |...+.||+|++|.||+|.  ..+|+.||||++.........              ...........+.+|+..+.++.+
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~  109 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE  109 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5567889999999999997  568999999998654321100              000111123456789999999975


Q ss_pred             CC--cceeeeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC-eEecCCCCCCEE
Q 003199          592 KN--IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSP-IIHRDIKSTNIL  668 (840)
Q Consensus       592 ~n--iv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-ivH~Dlk~~Nil  668 (840)
                      ..  +.+++++    ...++||||++++++........ .....+...++.|++.++++||+   .+ ++||||||+||+
T Consensus       110 ~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~LH~---~g~iiH~Dikp~NIl  181 (237)
T smart00090      110 AGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDV-EPEEEEEFELYDDILEEMRKLYK---EGELVHGDLSEYNIL  181 (237)
T ss_pred             cCCCCCeeeEe----cCceEEEEEecCCcccccccccC-CcchHHHHHHHHHHHHHHHHHHh---cCCEEeCCCChhhEE
Confidence            33  4444443    23489999999988876543322 45566678999999999999999   88 999999999999


Q ss_pred             EcCCCCCeeecccchhhh
Q 003199          669 LDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       669 l~~~~~~kl~Dfg~a~~~  686 (840)
                      ++ ++.++++|||.+...
T Consensus       182 i~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      182 VH-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             EE-CCCEEEEEChhhhcc
Confidence            99 889999999998754

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.68  E-value=1.5e-16  Score=158.24  Aligned_cols=138  Identities=20%  Similarity=0.312  Sum_probs=109.6

Q ss_pred             eeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      .||+|++|.||+|.+ +|..|++|+.......  ....+.......+.+|++++..+.|+++.....++......++|||
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~--~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e   77 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYR--HPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVME   77 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCc--CchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEE
Confidence            389999999999985 4789999986433211  0111222334678899999999998876665555566667789999


Q ss_pred             ecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       613 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      |++|++|.+.+.....        .++.+++.+|.++|+   .+++|||++|+||+++ ++.++++|||+++.
T Consensus        78 ~~~g~~l~~~~~~~~~--------~~~~~i~~~l~~lH~---~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        78 YIEGKPLKDVIEEGND--------ELLREIGRLVGKLHK---AGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             EECCccHHHHHhhcHH--------HHHHHHHHHHHHHHH---CCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            9999999988765321        789999999999999   9999999999999999 78999999999865

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.68  E-value=2.3e-16  Score=156.39  Aligned_cols=145  Identities=19%  Similarity=0.169  Sum_probs=109.9

Q ss_pred             cCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCc------------hhhHHHHHHHHHHHHHHhccCCCC--
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASD------------TDQLQLDKGLKTEVETLGNIRHKN--  593 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~------------~~~~~~~~~~~~E~~~l~~l~h~n--  593 (840)
                      |...+.||+|+||.||+|...+|+.||||++...........            ............|+.++..+.|++  
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   96 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP   96 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            556788999999999999888899999999764331110000            001112334678899999998774  


Q ss_pred             cceeeeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       594 iv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      +...++.    ...++||||+++++|......       .....++.+++.++.++|+   .+++||||||+||++++++
T Consensus        97 v~~~~~~----~~~~lv~e~~~g~~L~~~~~~-------~~~~~~~~~i~~~l~~lh~---~gi~H~Dl~p~Nill~~~~  162 (198)
T cd05144          97 VPKPIDW----NRHAVVMEYIDGVELYRVRVL-------EDPEEVLDEILEEIVKAYK---HGIIHGDLSEFNILVDDDE  162 (198)
T ss_pred             CCceeec----CCceEEEEEeCCcchhhcccc-------ccHHHHHHHHHHHHHHHHH---CCCCcCCCCcccEEEcCCC
Confidence            4444432    345899999999998765431       3456788999999999999   9999999999999999999


Q ss_pred             CCeeecccchhhh
Q 003199          674 QPKVADFGIAKVL  686 (840)
Q Consensus       674 ~~kl~Dfg~a~~~  686 (840)
                      .++|+|||.+...
T Consensus       163 ~~~liDfg~~~~~  175 (198)
T cd05144         163 KIYIIDWPQMVST  175 (198)
T ss_pred             cEEEEECCccccC
Confidence            9999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=1.5e-17  Score=174.96  Aligned_cols=175  Identities=23%  Similarity=0.345  Sum_probs=132.7

Q ss_pred             cceEEEeecCCCChHHHhhcC--CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          606 CNLLVYEYMPNGNLWDALHKG--LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      +.++.|++|+..+|.+|+...  ....+|.....++.|++.|++|      ++.+|||+||.||+...+..+||.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhhhe
Confidence            568999999999999999644  3567889999999999999999      47899999999999999999999999998


Q ss_pred             hhhhccCC---CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          684 KVLQARGG---KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       684 ~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ........   .....+...||..||+||.+.+..|+.|+||||+|++++|++.   +|...              ....
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~---~f~T~--------------~er~  466 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLI---QFSTQ--------------FERI  466 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHH---HhccH--------------HHHH
Confidence            76644220   1223456789999999999999999999999999999999997   22211              0111


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV  803 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ev  803 (840)
                      .+..++-+..+++.+......-..+..+++.+.|.+||++.++
T Consensus       467 ~t~~d~r~g~ip~~~~~d~p~e~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  467 ATLTDIRDGIIPPEFLQDYPEEYTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             HhhhhhhcCCCChHHhhcCcHHHHHHHHhcCCCcccCchHHHH
Confidence            1122333444444443333344567779999999999955544

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.65  E-value=1e-15  Score=175.07  Aligned_cols=144  Identities=19%  Similarity=0.273  Sum_probs=114.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ..|...+.||+|+||+||+|.+.+ ..+++|+.......  ....+.....+.+.+|+++++.++|++++....++....
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~-~~~v~k~~~~~~~~--~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~  409 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLG-RDAVIKERVPKGYR--HPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPE  409 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecC-ccceeEEEeccccc--chhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCC
Confidence            344667899999999999998764 44555543222111  011122233567889999999999999998888887777


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++.         ....++.++++++.|||+   .+++|||+||+||++ +++.++|+|||+++.
T Consensus       410 ~~~lv~E~~~g~~L~~~l~---------~~~~~~~~i~~~L~~lH~---~giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        410 EKTIVMEYIGGKDLKDVLE---------GNPELVRKVGEIVAKLHK---AGIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             CCEEEEEecCCCcHHHHHH---------HHHHHHHHHHHHHHHHHh---CCCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            7899999999999998875         356799999999999999   999999999999999 677999999999865

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.61  E-value=3.6e-16  Score=176.05  Aligned_cols=209  Identities=21%  Similarity=0.277  Sum_probs=135.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ..|...+.|..|+||.||.++.+ +.+.+|+| +.+..               .+.+-  ++.....|.+|         
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~k-iNkq~---------------lilRn--ilt~a~npfvv---------  135 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAMK-INKQN---------------LILRN--ILTFAGNPFVV---------  135 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhhc-ccccc---------------hhhhc--cccccCCccee---------
Confidence            35666788999999999999655 57788884 31111               11111  22222233332         


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                                  |+=...+...+ .++.        +++.+++|+|+   .+|||||+||+|.+|+.-|++|++|||+++
T Consensus       136 ------------gDc~tllk~~g-~lPv--------dmvla~Eylh~---ygivhrdlkpdnllIT~mGhiKlTDfgLsk  191 (1205)
T KOG0606|consen  136 ------------GDCATLLKNIG-PLPV--------DMVLAVEYLHS---YGIVHRDLKPDNLLITSMGHIKLTDFGLSK  191 (1205)
T ss_pred             ------------chhhhhcccCC-CCcc--------hhhHHhHhhcc---CCeecCCCCCCcceeeecccccccchhhhh
Confidence                        33223333221 2221        23789999999   999999999999999999999999999986


Q ss_pred             hhhccC------------CCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhh
Q 003199          685 VLQARG------------GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW  752 (840)
Q Consensus       685 ~~~~~~------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~  752 (840)
                      .-....            .........+||+.|+|||++....|...+|+|++|+|+||.+.|..||.++..+.  +  +
T Consensus       192 ~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpee--l--f  267 (1205)
T KOG0606|consen  192 KGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE--L--F  267 (1205)
T ss_pred             hhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHH--H--H
Confidence            642110            01112245689999999999999999999999999999999999999998752110  0  0


Q ss_pred             hhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC
Q 003199          753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP  798 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp  798 (840)
                      .+...+.         ..+.+.......+..+++.+.++.+|..|.
T Consensus       268 g~visd~---------i~wpE~dea~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  268 GQVISDD---------IEWPEEDEALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             hhhhhhh---------ccccccCcCCCHHHHHHHHHHHHhChHhhc
Confidence            0000000         011111112233455566688889999995

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=3.5e-16  Score=177.48  Aligned_cols=258  Identities=23%  Similarity=0.289  Sum_probs=193.4

Q ss_pred             cCccCeeeccCCcEEEEEEeC--CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecC
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN--SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSL  604 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~  604 (840)
                      |...+.||+|+|+.|-.....  ....+|+|.+.....        .....+.+..|..+-..+. |+|++++++...+.
T Consensus        22 ~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~--------~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~   93 (601)
T KOG0590|consen   22 YKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPK--------SEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSP   93 (601)
T ss_pred             ccccccccccccchhhhhhhcCCCcceeeccCCCCCCC--------ccchhhhcCccccccccccccccccccCCccCCC
Confidence            445566999999999887543  234566666533321        1122344555777777776 99999999999999


Q ss_pred             ccceEEEeecCCCChHHHh-hcCCCCCChHHHHHHHHHHHHHHHHHh-hcCCCCeEecCCCCCCEEEcCCC-CCeeeccc
Q 003199          605 YCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNY-QPKVADFG  681 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l-~~~~~~~~~~~~~~i~~~i~~~l~~LH-~~~~~~ivH~Dlk~~Nill~~~~-~~kl~Dfg  681 (840)
                      ...+++.+|..++++.+-+ +......+......++.|+..++.|+| .   .+++|||+||+|.+++..+ ..+++|||
T Consensus        94 ~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~---~~~~h~~ikP~n~~l~~s~~~l~~~df~  170 (601)
T KOG0590|consen   94 RSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPE---NGVTHRDIKPSNSLLDESGSALKIADFG  170 (601)
T ss_pred             cccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcc---cccccCCCCCccchhccCCCcccCCCch
Confidence            9999999999999999988 544335677788889999999999999 7   8999999999999999999 99999999


Q ss_pred             chhhhhccCCCCcceecccc-cccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          682 IAKVLQARGGKDSTTTVIAG-TYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~g-t~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      +|..+..-.+.........| ++.|+|||...+. ...+..|+||.|+++.-+++|..|++........+..|...+...
T Consensus       171 ~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  250 (601)
T KOG0590|consen  171 LATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRF  250 (601)
T ss_pred             hhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeeccccccc
Confidence            99888663455555666778 9999999998874 457889999999999999999999987554444444443322110


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      .           ...+........++...++..+|..|.+.+++...=
T Consensus       251 ~-----------~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d~  287 (601)
T KOG0590|consen  251 T-----------QLPWNSISDQAHDLLHKILKENPSNRLSIEELKLDN  287 (601)
T ss_pred             c-----------cCccccCChhhhhcccccccCCchhccccccccccc
Confidence            0           011122233445566678889999999998886553

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.57  E-value=1.5e-14  Score=142.32  Aligned_cols=146  Identities=20%  Similarity=0.190  Sum_probs=99.6

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhh--------------HHHHHHHHHHHHHHhccCCCC--c
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQ--------------LQLDKGLKTEVETLGNIRHKN--I  594 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~--------------~~~~~~~~~E~~~l~~l~h~n--i  594 (840)
                      .+.||+|+||+||+|...+|+.||||++..............              .........|...+.++.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            457999999999999887899999999864332111000000              001112245666666664432  4


Q ss_pred             ceeeeEEecCccceEEEeecCCCChHH-HhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          595 VKLYCYFSSLYCNLLVYEYMPNGNLWD-ALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       595 v~l~~~~~~~~~~~lV~e~~~~gsL~~-~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      .+.+++    ...++||||++++.+.. .+....  .. ..+..++.+++.++.++|..  .+|+||||||+||+++ ++
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~--~~-~~~~~~~~~~~~~l~~lh~~--~~ivH~Dl~p~Nili~-~~  151 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR--LL-EDPEELYDQILELMRKLYRE--AGLVHGDLSEYNILVD-DG  151 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhh--hc-ccHHHHHHHHHHHHHHHhhc--cCcCcCCCChhhEEEE-CC
Confidence            444443    23589999999854321 121111  11 56788999999999999974  6899999999999999 88


Q ss_pred             CCeeecccchhhh
Q 003199          674 QPKVADFGIAKVL  686 (840)
Q Consensus       674 ~~kl~Dfg~a~~~  686 (840)
                      .++++|||.+...
T Consensus       152 ~~~liDfg~a~~~  164 (187)
T cd05119         152 KVYIIDVPQAVEI  164 (187)
T ss_pred             cEEEEECcccccc
Confidence            9999999999654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.55  E-value=4.2e-14  Score=143.33  Aligned_cols=145  Identities=17%  Similarity=0.132  Sum_probs=107.9

Q ss_pred             cCeee-ccCCcEEEEEEeCCCcEEEEEEeccccccc--ccCc-hhhHHHHHHHHHHHHHHhccCCCCc--ceeeeEEecC
Q 003199          531 KNKVG-QGGSGTVYKIDLNSGEVVAVKKLWSQRTKV--SASD-TDQLQLDKGLKTEVETLGNIRHKNI--VKLYCYFSSL  604 (840)
Q Consensus       531 ~~~lg-~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~--~~~~-~~~~~~~~~~~~E~~~l~~l~h~ni--v~l~~~~~~~  604 (840)
                      ...|| .|+.|+||.+... +..++||++.......  .... .........+.+|++++.++.|+++  ++.+++....
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            45788 8999999999776 7889999885432110  0000 0011234667889999999998775  6677664332


Q ss_pred             c----cceEEEeecCC-CChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          605 Y----CNLLVYEYMPN-GNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       605 ~----~~~lV~e~~~~-gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      .    ..++||||+++ .+|.+++...  .++..    .+.+++.++.++|+   .||+||||||+|||++.++.++|+|
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~--~l~~~----~~~~i~~~l~~lH~---~GI~HrDlkp~NILv~~~~~v~LID  185 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEA--PLSEE----QWQAIGQLIARFHD---AGVYHADLNAHNILLDPDGKFWLID  185 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcC--CCCHH----HHHHHHHHHHHHHH---CCCCCCCCCchhEEEcCCCCEEEEE
Confidence            2    22599999997 6898888653  34433    35689999999999   9999999999999999988999999


Q ss_pred             ccchhh
Q 003199          680 FGIAKV  685 (840)
Q Consensus       680 fg~a~~  685 (840)
                      ||.++.
T Consensus       186 fg~~~~  191 (239)
T PRK01723        186 FDRGEL  191 (239)
T ss_pred             CCCccc
Confidence            998865

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.54  E-value=3.5e-14  Score=134.52  Aligned_cols=135  Identities=22%  Similarity=0.175  Sum_probs=112.4

Q ss_pred             ccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC--CCcceeeeEEecCccc
Q 003199          530 EKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH--KNIVKLYCYFSSLYCN  607 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~  607 (840)
                      +.+.||+|.++.||++...+ ..+++|+......            ...+.+|+.+++.++|  ..+++++++....+..
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~------------~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~   68 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK------------GADREREVAILQLLARKGLPVPKVLASGESDGWS   68 (155)
T ss_pred             cceecccccccceEEEEecC-CeEEEEecCCCCc------------hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCcc
Confidence            34679999999999998764 7899998743321            3467889999999976  5899999988888889


Q ss_pred             eEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          608 LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       608 ~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ++++||++++.+...        +......++.+++++++++|.....+++|+|++|+||++++.+.++++|||.+..
T Consensus        69 ~~v~e~~~g~~~~~~--------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          69 YLLMEWIEGETLDEV--------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             EEEEEecCCeecccC--------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            999999988777543        5567788899999999999985445799999999999999989999999998864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=8e-14  Score=161.02  Aligned_cols=109  Identities=39%  Similarity=0.562  Sum_probs=58.3

Q ss_pred             ccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccC
Q 003199          335 LVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSN  413 (840)
Q Consensus       335 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~  413 (840)
                      ++.|+|++|.+++.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|||++|+|+|.+|..+..+ .++.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            4445555555555555555555555555555555555555555555555555555555555555555444 344555555


Q ss_pred             CCCcCcCCcccccC---CCcccccCCCCCcccc
Q 003199          414 NRLSGPIPLSLIKE---GLVESFSGNPGLCVSV  443 (840)
Q Consensus       414 N~l~~~~p~~~~~~---~~~~~~~~n~~~c~~~  443 (840)
                      |+++|.+|..+...   .....+.+|+++|+.+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            55555555433221   1234677888888754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.46  E-value=3.7e-15  Score=156.95  Aligned_cols=201  Identities=25%  Similarity=0.418  Sum_probs=108.2

Q ss_pred             EEeeccccccccchhhh-cCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhccccc
Q 003199          170 LQLYNNSLSGEISSVIA-NSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM  248 (840)
Q Consensus       170 L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~  248 (840)
                      |.|++-++...+.+.+. .+.--...||+.|++. .+|..+..+..|+.+.|..|.+. .+|..++++..|++++++.|+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence            44444444433322222 2334445566666666 55666666666666666666665 444455555555555555555


Q ss_pred             ccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchh
Q 003199          249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSE  328 (840)
Q Consensus       249 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  328 (840)
                      ++                         .+|..++.+ -|+.|-+++|+++ ..|..++.+..|..|+.+.|.+. .+|..
T Consensus       133 lS-------------------------~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsq  184 (722)
T KOG0532|consen  133 LS-------------------------HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQ  184 (722)
T ss_pred             hh-------------------------cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHH
Confidence            44                         444444333 2444444555554 33444444555555555555554 44555


Q ss_pred             hcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc
Q 003199          329 IYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL  404 (840)
Q Consensus       329 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  404 (840)
                      ++.+.+|+.|.+..|++. .+|..+..| .|..||+|.|+++ .+|-.|..|+.|++|-|.+|+|+ +.|..+|..
T Consensus       185 l~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k  256 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK  256 (722)
T ss_pred             hhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence            555556666666666655 344444433 3566666666665 56666666666666666666666 566666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.46  E-value=3.6e-15  Score=157.01  Aligned_cols=214  Identities=29%  Similarity=0.429  Sum_probs=176.2

Q ss_pred             eeeccCCcccccCCcccc-CCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccc
Q 003199          145 DLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN  223 (840)
Q Consensus       145 ~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N  223 (840)
                      .|.|++-++.......+. .+..-...||+.|++. .+|..++.+-.|+.|.|..|.+. .+|..+.++..|++|||+.|
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N  131 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN  131 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence            356666666633222222 3555677899999998 67788889999999999999998 78999999999999999999


Q ss_pred             cccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCc
Q 003199          224 KLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIAN  303 (840)
Q Consensus       224 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  303 (840)
                      +++ ..|..+|.++                         |+.|-+++|+++ .+|+.++.++.|..||.+.|.+.. .|.
T Consensus       132 qlS-~lp~~lC~lp-------------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lps  183 (722)
T KOG0532|consen  132 QLS-HLPDGLCDLP-------------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPS  183 (722)
T ss_pred             hhh-cCChhhhcCc-------------------------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chH
Confidence            998 6777666543                         778889999998 889999989999999999999984 566


Q ss_pred             ccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccC-
Q 003199          304 TVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKS-  382 (840)
Q Consensus       304 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-  382 (840)
                      .++++.+|+.|.+..|++. .+|.+++ ...|..||+|.|+++ .+|-.|.+|+.|++|-|.+|.|+ .+|..+..... 
T Consensus       184 ql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkV  259 (722)
T KOG0532|consen  184 QLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKV  259 (722)
T ss_pred             HhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccce
Confidence            6889999999999999998 6788887 567999999999999 89999999999999999999998 67777654433 


Q ss_pred             --CCEEECcCcc
Q 003199          383 --LNVLDLSNNL  392 (840)
Q Consensus       383 --L~~L~l~~N~  392 (840)
                        .++|+..-++
T Consensus       260 HIFKyL~~qA~q  271 (722)
T KOG0532|consen  260 HIFKYLSTQACQ  271 (722)
T ss_pred             eeeeeecchhcc
Confidence              4566666553

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.44  E-value=5.8e-13  Score=146.90  Aligned_cols=158  Identities=22%  Similarity=0.230  Sum_probs=106.6

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCch--------------------h----------h
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDT--------------------D----------Q  572 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~--------------------~----------~  572 (840)
                      +....|. .+.||+|++|.||+|.+++|+.||||+.+....+....+.                    +          .
T Consensus       115 ~~F~~fd-~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  193 (437)
T TIGR01982       115 ELFAEFE-EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKT  193 (437)
T ss_pred             HHHhhCC-CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHH
Confidence            3344444 3689999999999999999999999998543211100000                    0          0


Q ss_pred             HHHHHHHHHHHHHHhccC----CCCcceeeeEE-ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHH-HH
Q 003199          573 LQLDKGLKTEVETLGNIR----HKNIVKLYCYF-SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ-GL  646 (840)
Q Consensus       573 ~~~~~~~~~E~~~l~~l~----h~niv~l~~~~-~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~-~l  646 (840)
                      ...+-+|.+|...+.++.    |.+-+.+-..+ ......++||||++|+++.+.........   .+..++..++. .+
T Consensus       194 l~~Eldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~---~~~~ia~~~~~~~l  270 (437)
T TIGR01982       194 LRRELDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGL---DRKALAENLARSFL  270 (437)
T ss_pred             HHHHHCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCC---CHHHHHHHHHHHHH
Confidence            011124566676666663    33333333333 22345689999999999988765322122   34557777766 46


Q ss_pred             HHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhh
Q 003199          647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ  687 (840)
Q Consensus       647 ~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~  687 (840)
                      ..+|.   .|++|+|++|.||+++.++.++++|||++..+.
T Consensus       271 ~ql~~---~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       271 NQVLR---DGFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             HHHHh---CCceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            78888   899999999999999999999999999987663

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.43  E-value=2.7e-13  Score=150.18  Aligned_cols=197  Identities=35%  Similarity=0.490  Sum_probs=110.2

Q ss_pred             EEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCC-CCCeeeccCCcccccCCccccCCCCCcEEEeec
Q 003199           96 DLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLT-ELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN  174 (840)
Q Consensus        96 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  174 (840)
                      .|++..|.+. .....+..++.++.|++.+|+  ...++.....+. +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcc--cccCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            4666666664 233344455666666666665  344555555553 6666666666666 3444556666666666666


Q ss_pred             cccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCC
Q 003199          175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP  254 (840)
Q Consensus       175 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  254 (840)
                      |++... +.....++.|+.|++++|++. .+|........|++|++++|++.                         ..+
T Consensus       173 N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-------------------------~~~  225 (394)
T COG4886         173 NDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-------------------------ELL  225 (394)
T ss_pred             chhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-------------------------ecc
Confidence            666633 333335566666666666666 34444344445666666666422                         233


Q ss_pred             cccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccc
Q 003199          255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP  326 (840)
Q Consensus       255 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  326 (840)
                      ..+..+.++..+.+.+|++. ..+..+..++.++.|++++|.++....  ++.+.+++.|++++|.+....|
T Consensus       226 ~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         226 SSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            44555556666666666665 334555555556666666666654333  5555566666666665554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.41  E-value=3.8e-13  Score=148.96  Aligned_cols=198  Identities=31%  Similarity=0.455  Sum_probs=111.2

Q ss_pred             EEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccc-cccEEEecCccccccCCccccCCCCCcEEEc
Q 003199           21 RLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT-KLRIMVLATCALHGQIPASIGNVTSLTDLEL   99 (840)
Q Consensus        21 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   99 (840)
                      .|+++.|.+. .....+..++.++.|++..|   .+.++++. ...++ +|+.|++++|.+. .+|..++.+++|+.|++
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n---~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNN---NITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL  170 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCc---ccccCccc-cccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence            4566666554 33334445566666666666   33333321 22332 5666666666665 33445666666666666


Q ss_pred             cCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccccc
Q 003199          100 TGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG  179 (840)
Q Consensus       100 ~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  179 (840)
                      ++|++. .+|.....+++|+.|++++|+  ...+|.....+..|++|.+++|.+. ..+..+..+.++..|.+.+|++..
T Consensus       171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~--i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~  246 (394)
T COG4886         171 SFNDLS-DLPKLLSNLSNLNNLDLSGNK--ISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED  246 (394)
T ss_pred             CCchhh-hhhhhhhhhhhhhheeccCCc--cccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee
Confidence            666666 455555566666666666665  4445554444455666666666433 244455566666666666666652


Q ss_pred             ccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCc
Q 003199          180 EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPA  231 (840)
Q Consensus       180 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  231 (840)
                       .+..+..+++|++|++++|+++.+..  ++.+.+|+.|++++|.+....+.
T Consensus       247 -~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         247 -LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             -ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence             24455566666666666666663322  55666666666666666544444

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=5.2e-13  Score=144.16  Aligned_cols=252  Identities=21%  Similarity=0.204  Sum_probs=182.4

Q ss_pred             HhcCccCeeec--cCCcEEEEEEe---CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeee
Q 003199          526 EAMTEKNKVGQ--GGSGTVYKIDL---NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~--G~~g~Vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~  599 (840)
                      +.+...+.+|.  |.+|.||.+..   .++..+|+|+-+.+...        ......=.+|+..-+.+ .|+|.++.+.
T Consensus       114 ~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~--------p~~~~~k~~~~~s~~~i~~~~~~v~~~~  185 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSP--------PLDSKRKLREFLSHHKIDSHENPVRDSP  185 (524)
T ss_pred             hhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCC--------ccccccccchhhcccccCccccccccCc
Confidence            34566778999  99999999855   47889999974333221        01111223466666666 4999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHH----HHHHHhhcCCCCeEecCCCCCCEEEcCC-CC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ----GLAYLHHGLLSPIIHRDIKSTNILLDVN-YQ  674 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~----~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~~  674 (840)
                      .+.+.+..++-+|++ +.++..+.+.....++....+.+..+..+    |+.++|+   .+++|-|+||.||+...+ ..
T Consensus       186 ~~e~~~~lfiqtE~~-~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs---~~~~~~~~kp~~i~~~~~~~s  261 (524)
T KOG0601|consen  186 AWEGSGILFIQTELC-GESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHS---NNIVHDDLKPANIFTTSDWTS  261 (524)
T ss_pred             ccccCCcceeeeccc-cchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCC---Ccccccccchhheecccccce
Confidence            999999999999999 57888888877656788888888888888    9999999   899999999999999999 88


Q ss_pred             CeeecccchhhhhccCCCC-c-ceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhh
Q 003199          675 PKVADFGIAKVLQARGGKD-S-TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW  752 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~-~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~  752 (840)
                      ++++|||+...+.+.+-.. . ......|...|++||.. .+.++.++|+|++|.+..+-.++..+....     ....|
T Consensus       262 ~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~-~~l~~~~~di~sl~ev~l~~~l~~~~~~~g-----~~~~W  335 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELL-NGLATFASDIFSLGEVILEAILGSHLPSVG-----KNSSW  335 (524)
T ss_pred             eecCCcceeEEccCCccccceeeeecCCCCceEeChhhh-ccccchHhhhcchhhhhHhhHhhcccccCC-----CCCCc
Confidence            9999999998876532111 1 11222678899999965 457899999999999999999987654321     11123


Q ss_pred             hhhhhccccchhhhcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          753 VSIKVDTKEGIMEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+...           ..+..++ .....++...+.++++.+|..|++.+.+.++
T Consensus       336 ~~~r~-----------~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l  379 (524)
T KOG0601|consen  336 SQLRQ-----------GYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTAL  379 (524)
T ss_pred             ccccc-----------ccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhcc
Confidence            22110           0011111 1122334447789999999999999987654

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.30  E-value=2.4e-12  Score=127.28  Aligned_cols=205  Identities=22%  Similarity=0.319  Sum_probs=139.3

Q ss_pred             HHhccCCCCcceeeeEEecCc-----cceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCC
Q 003199          585 TLGNIRHKNIVKLYCYFSSLY-----CNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSP  656 (840)
Q Consensus       585 ~l~~l~h~niv~l~~~~~~~~-----~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~  656 (840)
                      -+-.+.|.|+|+++.|+.+..     ...++.|||+.|++..+|++.   ...+....-.+|+-||..||.|||+ |.++
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~Pp  198 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CDPP  198 (458)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cCCc
Confidence            344556999999999986543     457899999999999999764   3456677778899999999999997 5689


Q ss_pred             eEecCCCCCCEEEcCCCCCeeecccchhhhhc--cCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh
Q 003199          657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQA--RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT  734 (840)
Q Consensus       657 ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~--~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t  734 (840)
                      |+|+++..+-|++..+|-+|+.-- -......  ............+-++|.|||+-.....+.++|||+||+-..||..
T Consensus       199 iihgnlTc~tifiq~ngLIkig~~-ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemai  277 (458)
T KOG1266|consen  199 IIHGNLTCDTIFIQHNGLIKIGSV-APDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAI  277 (458)
T ss_pred             cccCCcchhheeecCCceEEeccc-CccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHH
Confidence            999999999999999988887421 1111100  0011122233456789999998777778889999999999999998


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          735 GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       735 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                      |..--.....   .        ....+.+..+.-..-.+.       -...+..|++..|..||+|.+++.|.-.
T Consensus       278 lEiq~tnseS---~--------~~~ee~ia~~i~~len~l-------qr~~i~kcl~~eP~~rp~ar~llfHpll  334 (458)
T KOG1266|consen  278 LEIQSTNSES---K--------VEVEENIANVIIGLENGL-------QRGSITKCLEGEPNGRPDARLLLFHPLL  334 (458)
T ss_pred             heeccCCCcc---e--------eehhhhhhhheeeccCcc-------ccCcCcccccCCCCCCcchhhhhcCcee
Confidence            8654211100   0        000111111110000000       0124558999999999999999877544

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.28  E-value=9.2e-12  Score=138.60  Aligned_cols=157  Identities=18%  Similarity=0.186  Sum_probs=98.1

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeCC-CcEEEEEEecccccccccC--------------------c----hhhHHHH
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLNS-GEVVAVKKLWSQRTKVSAS--------------------D----TDQLQLD  576 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~--------------------~----~~~~~~~  576 (840)
                      .++...|+. +.||+|++|.||+|..++ |+.||||+.+.........                    .    .--.+..
T Consensus       116 ~~~F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~  194 (537)
T PRK04750        116 EEWFDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFE  194 (537)
T ss_pred             HHHHHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHH
Confidence            455666776 789999999999999887 9999999986442111000                    0    0000112


Q ss_pred             ------HHHHHHHHHHhccC----CCCcceeeeEEec-CccceEEEeecCCCChHHH--hhcCCCCCChHHHHHHHHHHH
Q 003199          577 ------KGLKTEVETLGNIR----HKNIVKLYCYFSS-LYCNLLVYEYMPNGNLWDA--LHKGLVHLDWPTRHKIAFGVA  643 (840)
Q Consensus       577 ------~~~~~E~~~l~~l~----h~niv~l~~~~~~-~~~~~lV~e~~~~gsL~~~--l~~~~~~~~~~~~~~i~~~i~  643 (840)
                            -++.+|...+.+++    +.+.+.+-..+.+ ....++||||++|+.+.+.  +...  ..+   +..++...+
T Consensus       195 ~~l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~--g~d---~~~la~~~v  269 (537)
T PRK04750        195 KTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAA--GTD---MKLLAERGV  269 (537)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhc--CCC---HHHHHHHHH
Confidence                  23445555544442    3433443333332 3456899999999999774  3222  122   122222222


Q ss_pred             H-HHHHHhhcCCCCeEecCCCCCCEEEcCCC----CCeeecccchhhhh
Q 003199          644 Q-GLAYLHHGLLSPIIHRDIKSTNILLDVNY----QPKVADFGIAKVLQ  687 (840)
Q Consensus       644 ~-~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~Dfg~a~~~~  687 (840)
                      . -+..+..   .|++|+|+||.||+++.++    .+++.|||++..+.
T Consensus       270 ~~~~~Qif~---~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        270 EVFFTQVFR---DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             HHHHHHHHh---CCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence            2 1222344   7999999999999999888    89999999987663

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.26  E-value=3e-12  Score=150.70  Aligned_cols=211  Identities=25%  Similarity=0.307  Sum_probs=155.6

Q ss_pred             CCCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCcccc
Q 003199           10 LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIG   89 (840)
Q Consensus        10 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   89 (840)
                      +|+.......+...+-+|.+. .++....+ ++|+.|-+..|.. .+..++...|..++.|++|||++|.-.+.+|..++
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~-~~~~~~~~-~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~  592 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIE-HIAGSSEN-PKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG  592 (889)
T ss_pred             cccccchhheeEEEEeccchh-hccCCCCC-CccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence            677777788999999999998 66665544 4899999999931 16677777799999999999999988889999999


Q ss_pred             CCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcc--cccCCccccCCCCC
Q 003199           90 NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHL--SGKIPESILRLPKL  167 (840)
Q Consensus        90 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L  167 (840)
                      .|.+|++|+|+++.|+ .+|..+.+|++|.+|++..+. ....+|.....+++|++|.+..-..  +...-..+..+.+|
T Consensus       593 ~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~-~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  593 ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG-RLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             hhhhhhcccccCCCcc-ccchHHHHHHhhheecccccc-ccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence            9999999999999999 899999999999999999887 3344577777799999999876542  22233445566677


Q ss_pred             cEEEeeccccccccchhhhcCCCCC----EEEccCCcCcccCCcCCCCCCCcceecccccccccc
Q 003199          168 RVLQLYNNSLSGEISSVIANSTTLT----MLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGP  228 (840)
Q Consensus       168 ~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  228 (840)
                      +.|.......  .....+..+..|.    .+.+..+... ..+..+..+.+|+.|.+.++.+...
T Consensus       671 ~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  671 ENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             hhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchh
Confidence            7776654443  1111223333333    3333333333 4555677788888888888877643

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.23  E-value=3.2e-11  Score=116.49  Aligned_cols=131  Identities=19%  Similarity=0.185  Sum_probs=94.0

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcc-eeeeEEecCccceE
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIV-KLYCYFSSLYCNLL  609 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv-~l~~~~~~~~~~~l  609 (840)
                      .+.++.|.++.||++... +..|++|.......           ....+..|+++++.+.+.+++ +++.+..  ...++
T Consensus         3 ~~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-----------~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~l   68 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-----------LLINRENEAENSKLAAEAGIGPKLYYFDP--ETGVL   68 (170)
T ss_pred             eeecCCcccCceEEEEEC-CeEEEEEeCCCCcc-----------cccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeE
Confidence            356899999999999876 78899998743221           112356788888888655544 4444432  34589


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcC--CCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL--LSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~--~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ||||+++.++.+.  .       .....++.+++++++.||+..  ..+++|+|++|.||+++ ++.++++|||.+..
T Consensus        69 v~e~i~G~~l~~~--~-------~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          69 ITEFIEGSELLTE--D-------FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             EEEecCCCccccc--c-------ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            9999999877643  0       112345678999999999821  11259999999999999 66899999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.22  E-value=1.2e-10  Score=107.49  Aligned_cols=138  Identities=25%  Similarity=0.335  Sum_probs=106.5

Q ss_pred             eeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEe
Q 003199          533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e  612 (840)
                      .+++|+-+.+|.+.+. |..+++|.=..+.-  .....+..-....-.+|+.++++++--.|.-.+-+..+.+...|+||
T Consensus         3 ~i~~GAEa~i~~~~~~-g~~av~K~Ri~K~Y--R~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me   79 (204)
T COG3642           3 LIKQGAEAIIYLTDFL-GLPAVVKERIPKRY--RHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVME   79 (204)
T ss_pred             hhhCCcceeEEeeecc-CcceEEEeecCccc--CChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEE
Confidence            5789999999999886 44566664322221  11223334455677889999999876666666667777788889999


Q ss_pred             ecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       613 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      |++|..|.+.+...        ...++..+-.-+.-||.   .||||+|+.++||++..+. +.++|||++..
T Consensus        80 ~I~G~~lkd~l~~~--------~~~~~r~vG~~vg~lH~---~givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          80 YIEGELLKDALEEA--------RPDLLREVGRLVGKLHK---AGIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             EeCChhHHHHHHhc--------chHHHHHHHHHHHHHHh---cCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            99999999888765        25577788888889999   9999999999999998775 89999999864

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.22  E-value=3.5e-12  Score=124.23  Aligned_cols=130  Identities=23%  Similarity=0.252  Sum_probs=78.8

Q ss_pred             cCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEc
Q 003199          261 KNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDL  340 (840)
Q Consensus       261 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  340 (840)
                      +.|+++||++|.|+ .+-++..-.|.++.|++|+|.+..+.  .+..+++|+.|+|++|.++ .+..+-..+.+++.|.|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            44555555555555 44444445556666666666665322  2555666666666666665 33334445566777777


Q ss_pred             CCCccCCCCCCcccCccccchhcccCCccCCCc-chhcccccCCCEEECcCcccccc
Q 003199          341 SDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSI-PNSLSSLKSLNVLDLSNNLLTGY  396 (840)
Q Consensus       341 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~  396 (840)
                      ++|.|..  -..++.+-+|..||+++|+|.... ...++++|-|+.|-|.+|+|.+.
T Consensus       360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            7777652  234556667777777777776321 24577788888888888888854

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.21  E-value=1.4e-10  Score=111.92  Aligned_cols=145  Identities=15%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             CeeeccCCcEEEEEEeCC-------CcEEEEEEecccccccccCch----h--------hHHHHHHH----HHHHHHHhc
Q 003199          532 NKVGQGGSGTVYKIDLNS-------GEVVAVKKLWSQRTKVSASDT----D--------QLQLDKGL----KTEVETLGN  588 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~-------~~~vavK~~~~~~~~~~~~~~----~--------~~~~~~~~----~~E~~~l~~  588 (840)
                      ..||.|.-+.||.|...+       +..+|||+++...........    +        .....+.+    .+|+..|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            368999999999996543       479999998643322111100    0        00112233    389999999


Q ss_pred             cCC--CCcceeeeEEecCccceEEEeecCCCChHH-HhhcCCCCCChHHHHHHHHHHHHHHHHH-hhcCCCCeEecCCCC
Q 003199          589 IRH--KNIVKLYCYFSSLYCNLLVYEYMPNGNLWD-ALHKGLVHLDWPTRHKIAFGVAQGLAYL-HHGLLSPIIHRDIKS  664 (840)
Q Consensus       589 l~h--~niv~l~~~~~~~~~~~lV~e~~~~gsL~~-~l~~~~~~~~~~~~~~i~~~i~~~l~~L-H~~~~~~ivH~Dlk~  664 (840)
                      +..  -++.+++++    ...++||||+.++.+.. .+...  .++..+...+..+++.++..+ |.   .++||+||++
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~--~~~~~~~~~i~~~i~~~l~~l~H~---~glVHGDLs~  153 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA--KLNDEEMKNAYYQVLSMMKQLYKE---CNLVHADLSE  153 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhcc--ccCHHHHHHHHHHHHHHHHHHHHh---CCeecCCCCH
Confidence            853  566667754    45689999997654422 22221  344456677889999999999 77   8999999999


Q ss_pred             CCEEEcCCCCCeeecccchhhh
Q 003199          665 TNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       665 ~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .||++++ +.++++|||.|...
T Consensus       154 ~NIL~~~-~~v~iIDF~qav~~  174 (197)
T cd05146         154 YNMLWHD-GKVWFIDVSQSVEP  174 (197)
T ss_pred             HHEEEEC-CcEEEEECCCceeC
Confidence            9999974 67999999988654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=3.6e-12  Score=124.14  Aligned_cols=156  Identities=22%  Similarity=0.214  Sum_probs=87.3

Q ss_pred             ccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCC
Q 003199           64 IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL  143 (840)
Q Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L  143 (840)
                      +.-+++|.++.++.|.-..+. +....-+.|+.+...+..+.. .| .+-....+..+.-..-....+..-......+.|
T Consensus       210 l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L  286 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTWQEL  286 (490)
T ss_pred             hHHhhhhheeeeeccchhhee-ceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence            344566666666766544222 112223677888777776662 22 111112222221111111222222234445567


Q ss_pred             CeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccc
Q 003199          144 TDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN  223 (840)
Q Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N  223 (840)
                      ++|||++|.|+ .+..+..-+|.++.|++++|.|..+  +.+..+++|++|||++|.++ .+..+-..+-+.++|.|++|
T Consensus       287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence            78888888887 4556666777788888888877643  33677777777777777776 33344445566666666666


Q ss_pred             ccc
Q 003199          224 KLS  226 (840)
Q Consensus       224 ~l~  226 (840)
                      .|.
T Consensus       363 ~iE  365 (490)
T KOG1259|consen  363 KIE  365 (490)
T ss_pred             hHh
Confidence            664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2.4e-12  Score=132.07  Aligned_cols=215  Identities=21%  Similarity=0.193  Sum_probs=118.8

Q ss_pred             ccccccEEEecCccccccCC-ccccCCCCCcEEEccCCccccc--CchhhhcCCCCCeeecccCccccccCCcccCCCCC
Q 003199           66 RLTKLRIMVLATCALHGQIP-ASIGNVTSLTDLELTGNFITGH--IPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTE  142 (840)
Q Consensus        66 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~  142 (840)
                      ++.+|+...|.++.+..... +....+++++.|||++|-+...  +-.....|++|+.|+|+.|++....-...-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45566666666666542111 3455677777777777766632  22334556777777777776322211111224566


Q ss_pred             CCeeeccCCccccc-CCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCC--cCCCCCCCcceec
Q 003199          143 LTDLDMSVNHLSGK-IPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVP--QDLGQWSPLVVLD  219 (840)
Q Consensus       143 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~l~~L~~L~  219 (840)
                      |+.|.|+.|.++.. +......+|+|+.|+|..|....+......-+..|++|+|++|++-. .+  ...+.++.|..|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence            77777777776632 11233446667777777764332333444455666777777666652 22  2344566666666


Q ss_pred             cccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeecc-CCccccCCCcccEEeccCCccc
Q 003199          220 LSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGS-IPEGILSLPHVSIIDLSYNSFS  298 (840)
Q Consensus       220 L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~  298 (840)
                      ++.+.|..+-....                  ...+-...+++|++|+++.|++... .-..+..+++|+.|.+..|.++
T Consensus       278 ls~tgi~si~~~d~------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDV------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCc------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            66666553211110                  0001134567788888888888511 1234555777888888888876


Q ss_pred             c
Q 003199          299 G  299 (840)
Q Consensus       299 ~  299 (840)
                      .
T Consensus       340 ~  340 (505)
T KOG3207|consen  340 K  340 (505)
T ss_pred             c
Confidence            4

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.19  E-value=5.2e-13  Score=133.40  Aligned_cols=218  Identities=25%  Similarity=0.315  Sum_probs=112.0

Q ss_pred             cccCCCCCcEEEccCCccccc----CchhhhcCCCCCeeecccCcccccc----CCc-------ccCCCCCCCeeeccCC
Q 003199           87 SIGNVTSLTDLELTGNFITGH----IPPEIGLLKNLRQLELYYNQQLAGT----IPE-------ELGNLTELTDLDMSVN  151 (840)
Q Consensus        87 ~~~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~~~~~~----~p~-------~l~~l~~L~~L~L~~n  151 (840)
                      .+..+..++.|+|++|.+...    +...+...++|+..+++.=  +++.    +|.       ++...++|+.|+||+|
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            345567788888888888743    3445666777888777643  2332    222       2223334555555555


Q ss_pred             cccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCc-------------CCCCCCCccee
Q 003199          152 HLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQ-------------DLGQWSPLVVL  218 (840)
Q Consensus       152 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------~l~~l~~L~~L  218 (840)
                      .+....+..|                    -..+.++..|++|.|.+|.+.-....             ....-+.|+++
T Consensus       103 A~G~~g~~~l--------------------~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~  162 (382)
T KOG1909|consen  103 AFGPKGIRGL--------------------EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF  162 (382)
T ss_pred             ccCccchHHH--------------------HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence            4443222221                    11233445555555555554411111             11222345555


Q ss_pred             ccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeec----cCCccccCCCcccEEeccC
Q 003199          219 DLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEG----SIPEGILSLPHVSIIDLSY  294 (840)
Q Consensus       219 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~L~~  294 (840)
                      ..++|++......                    .+...|...+.|+.+.++.|.|..    .+..+|..+++|+.|||.+
T Consensus       163 i~~rNrlen~ga~--------------------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D  222 (382)
T KOG1909|consen  163 ICGRNRLENGGAT--------------------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD  222 (382)
T ss_pred             EeeccccccccHH--------------------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc
Confidence            5555554421111                    223456666777777777777741    1123455667777777777


Q ss_pred             Cccccc----CCcccCCCCCCceeecccceeeeccchhhcc-----cCcccEEEcCCCccC
Q 003199          295 NSFSGP----IANTVGNARNLSELFMQRNQISGFIPSEIYR-----AISLVKIDLSDNLLS  346 (840)
Q Consensus       295 N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~  346 (840)
                      |-++..    ....+..+++|++|++++|.+......++.+     .++|+.|.|.+|.|+
T Consensus       223 Ntft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  223 NTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             chhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            776532    2345556667777777777766544333321     334455555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=4e-12  Score=130.53  Aligned_cols=211  Identities=20%  Similarity=0.146  Sum_probs=150.3

Q ss_pred             CCCCCCCEEecCCCcCcccCC--ccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCcc-ccC
Q 003199           14 SPMQNLRRLDLSNNLFTGQFP--LSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPAS-IGN   90 (840)
Q Consensus        14 ~~l~~L~~L~Ls~n~i~~~~p--~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~   90 (840)
                      +++.+|++..|.++.+. ..+  .....+++++.|||++|-+.++.. -......|++|+.|.|+.|.+..-.... -..
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccchhh
Confidence            35678999999999887 444  366778999999999993332221 2345667899999999999886322222 235


Q ss_pred             CCCCcEEEccCCcccc-cCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccC-CccccCCCCCc
Q 003199           91 VTSLTDLELTGNFITG-HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKI-PESILRLPKLR  168 (840)
Q Consensus        91 l~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  168 (840)
                      +++|+.|.|+.|.++- .+......+|+|+.|+|..|. ...........+..|++|+|++|++-... -.....++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            7889999999999982 234456678999999999995 22222334556788999999999987432 14466789999


Q ss_pred             EEEeecccccccc-chh-----hhcCCCCCEEEccCCcCcccC-CcCCCCCCCcceeccccccccc
Q 003199          169 VLQLYNNSLSGEI-SSV-----IANSTTLTMLSLYDNSLTGEV-PQDLGQWSPLVVLDLSENKLSG  227 (840)
Q Consensus       169 ~L~L~~N~l~~~~-~~~-----~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~  227 (840)
                      .|+++.+.|+.+- |+.     ...+++|++|++..|+|...- ...+..+.+|+.|....|.+..
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            9999999987543 222     356789999999999996321 1234557788888888888874

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.17  E-value=4e-10  Score=103.28  Aligned_cols=150  Identities=24%  Similarity=0.325  Sum_probs=111.0

Q ss_pred             ccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceE
Q 003199          530 EKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      ....+-+|+-+.|+++.+. |+...||.-..+.-..  ...+..-..+..+.|++.+.++.--.|.-..-++.+.....+
T Consensus        11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRH--P~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i   87 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRH--PALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQI   87 (229)
T ss_pred             cceeeeccceeeEeeeccC-CceeEEeecccccccc--hHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeE
Confidence            3557889999999999988 7888888543333221  123334456778899999999875555555556667777789


Q ss_pred             EEeecCC-CChHHHhhcCCCCCChHHH-HHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC---Ceeecccchh
Q 003199          610 VYEYMPN-GNLWDALHKGLVHLDWPTR-HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ---PKVADFGIAK  684 (840)
Q Consensus       610 V~e~~~~-gsL~~~l~~~~~~~~~~~~-~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~Dfg~a~  684 (840)
                      +|||+++ .++.+++......-..... ..++..|-+.+.-||.   .+|+|+||..+||++.+++.   +.++|||++.
T Consensus        88 ~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~---ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   88 YMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHD---NDIIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             EEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhh---CCeecccccccceEEecCCCcCceEEEeecchh
Confidence            9999976 4778877655322333333 7889999999999999   89999999999999976653   4799999985


Q ss_pred             h
Q 003199          685 V  685 (840)
Q Consensus       685 ~  685 (840)
                      .
T Consensus       165 ~  165 (229)
T KOG3087|consen  165 V  165 (229)
T ss_pred             c
Confidence            4

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=1.7e-11  Score=115.70  Aligned_cols=84  Identities=25%  Similarity=0.298  Sum_probs=22.5

Q ss_pred             ccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhh-hcCCCCCeeecccCccccccCCcccCCCCCCCee
Q 003199           68 TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEELGNLTELTDL  146 (840)
Q Consensus        68 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~-~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L  146 (840)
                      .+|+.|+|++|.|+..  +.+..+++|+.|++++|+|+. +++.+ ..+++|+.|+|++|++-.-..-..+..+++|+.|
T Consensus        42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            3344444444444322  234445556666666666652 32223 3455555555555542111111223344445555


Q ss_pred             eccCCccc
Q 003199          147 DMSVNHLS  154 (840)
Q Consensus       147 ~L~~n~l~  154 (840)
                      +|.+|.+.
T Consensus       119 ~L~~NPv~  126 (175)
T PF14580_consen  119 SLEGNPVC  126 (175)
T ss_dssp             E-TT-GGG
T ss_pred             eccCCccc
Confidence            55555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.14  E-value=7.8e-12  Score=138.51  Aligned_cols=267  Identities=26%  Similarity=0.289  Sum_probs=141.9

Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEe
Q 003199           93 SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQL  172 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  172 (840)
                      .++.++...+.+....-. ...+..++.++++.|.  ...+-..+..+++|+.|++.+|+|..+ ...+..+++|++|+|
T Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~--i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~l  125 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNL--IAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDL  125 (414)
T ss_pred             hhhhhcchhccccchhhh-HHHhHhHHhhccchhh--hhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheec
Confidence            344455555444421111 1455566666676665  222333456667777777777777633 222566677777777


Q ss_pred             eccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhccccccccc
Q 003199          173 YNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV  252 (840)
Q Consensus       173 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  252 (840)
                      ++|.|+.+.  .+..++.|+.|++++|.|+.+  ..+..+..|+.+++++|++....+.                     
T Consensus       126 s~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~---------------------  180 (414)
T KOG0531|consen  126 SFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND---------------------  180 (414)
T ss_pred             ccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhh---------------------
Confidence            777776442  345556677777777776632  3344466666666666666533220                     


Q ss_pred             CCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCC--CCceeecccceeeeccchhhc
Q 003199          253 LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR--NLSELFMQRNQISGFIPSEIY  330 (840)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~~  330 (840)
                        . ...+.+++.+++.+|.+.  ....+..+..+..+++..|.++..-+  +..+.  .|+.+++++|++. ..+..+.
T Consensus       181 --~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~  252 (414)
T KOG0531|consen  181 --E-LSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLE  252 (414)
T ss_pred             --h-hhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-ccccccc
Confidence              1 234455555555555554  22233334444444555665553221  11122  2666666666665 3334455


Q ss_pred             ccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCC---cchh-cccccCCCEEECcCccccccCC
Q 003199          331 RAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSS---IPNS-LSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       331 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~~~~-~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      .+..+..|++++|++...  ..+...+.+..+.++.|.+...   .... ....+.++.+++.+|+.....+
T Consensus       253 ~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  253 NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            556666667776666532  2244455666666666666521   1111 3445566666666666664433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.11  E-value=1.1e-11  Score=137.38  Aligned_cols=126  Identities=31%  Similarity=0.390  Sum_probs=58.8

Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEe
Q 003199           93 SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQL  172 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  172 (840)
                      .++.+++..|.|.. +-..+..+++|..|++..|+  ...+...+..+++|++|+|++|.|+.+.  .+..++.|+.|++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~--i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNK--IEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL  147 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccc--hhhcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence            33333444444441 22234444444444444443  2222222444555555555555555332  2444455555555


Q ss_pred             eccccccccchhhhcCCCCCEEEccCCcCcccCC-cCCCCCCCcceecccccccc
Q 003199          173 YNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVP-QDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       173 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~  226 (840)
                      ++|.|+.+  ..+..++.|+.+++++|++..+.+ . ...+.+|+.+++++|.+.
T Consensus       148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            55555422  223345555555555555553322 1 345555666666666554

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=8.1e-11  Score=127.40  Aligned_cols=249  Identities=19%  Similarity=0.197  Sum_probs=170.0

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC--CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN--SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      ..+|..+..||.|.|+.|++...+  ++..+++|.........    .++..    -..|+.+...+ .|.++++.+..+
T Consensus       264 ~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~----~~di~----sl~ev~l~~~l~~~~~~~g~~~~W  335 (524)
T KOG0601|consen  264 LTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATF----ASDIF----SLGEVILEAILGSHLPSVGKNSSW  335 (524)
T ss_pred             cCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccch----Hhhhc----chhhhhHhhHhhcccccCCCCCCc
Confidence            445677889999999999998554  67789998774433221    11111    12345555555 588888888777


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC-CCCeeecc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADF  680 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl~Df  680 (840)
                      ......++--||+++++........ ..++...++.+..|++.++.++|+   +.++|+|+||+||++..+ +..++.||
T Consensus       336 ~~~r~~~ip~e~~~~~s~~l~~~~~-~~~d~~~~~~~~~q~~~~l~~i~s---~~~~~~d~~psni~i~~~~~~~~~~~~  411 (524)
T KOG0601|consen  336 SQLRQGYIPLEFCEGGSSSLRSVTS-QMLDEDPRLRLTAQILTALNVIHS---KLFVHLDVKPSNILISNDGFFSKLGDF  411 (524)
T ss_pred             cccccccCchhhhcCcchhhhhHHH-HhcCcchhhhhHHHHHhccccccc---hhhhcccccccceeeccchhhhhcccc
Confidence            7777888999999999987766322 357778889999999999999999   999999999999999876 78899999


Q ss_pred             cchhhhhccCCCCcceecccccccc-cCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGY-LAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y-~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |.+..+.-.     ......++..| .+|+......+-.+.|+||||.-+.|.++|.+--..       ...|.      
T Consensus       412 ~~~t~~~~~-----~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~-------~~~~~------  473 (524)
T KOG0601|consen  412 GCWTRLAFS-----SGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSES-------GVQSL------  473 (524)
T ss_pred             cccccccee-----cccccccccccccchhhccccccccccccccccccccccccCcccCcc-------cccce------
Confidence            998753211     11111223334 355555666788899999999999999998642211       01111      


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                           .+....... .......+..+...+..+++..||.+.+...+.+.
T Consensus       474 -----~i~~~~~p~-~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~  517 (524)
T KOG0601|consen  474 -----TIRSGDTPN-LPGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEF  517 (524)
T ss_pred             -----eeecccccC-CCchHHhhhhhhhhhcCCccccchhhhhhcccchh
Confidence                 001111111 11112445566667899999999999988776554

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.09  E-value=9e-10  Score=120.27  Aligned_cols=167  Identities=17%  Similarity=0.190  Sum_probs=123.5

Q ss_pred             EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceEEEeecCCCChHHHhhc
Q 003199          546 DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK  625 (840)
Q Consensus       546 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~  625 (840)
                      ...++.+|.|..+.....          .......+.++.++.++||||++++..+...+..|+|+|.+.  -|..++.+
T Consensus        33 ~k~~~~~vsVF~~~~~~~----------~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~  100 (690)
T KOG1243|consen   33 RKADGGPVSVFVYKRSNG----------EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKE  100 (690)
T ss_pred             eeccCCceEEEEEeCCCc----------hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHH
Confidence            455788898888743331          223456678889999999999999999999999999999884  34555543


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccc
Q 003199          626 GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY  705 (840)
Q Consensus       626 ~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y  705 (840)
                          +........+.||+.||.+||..  .+++|+++.-..|++++.|+.||++|.++......+.   ......--..|
T Consensus       101 ----l~~~~v~~Gl~qIl~AL~FL~~d--~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~---~~~~~~~~~s~  171 (690)
T KOG1243|consen  101 ----LGKEEVCLGLFQILAALSFLNDD--CNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNA---PAKSLYLIESF  171 (690)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHhcc--CCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCc---ccccchhhhcc
Confidence                23456667788999999999864  6899999999999999999999999998865432111   11111122346


Q ss_pred             cCccccccCCCCccccchhHHHHHHHHHhC
Q 003199          706 LAPEYAYSSKATTKCDVYSFGVVLMELITG  735 (840)
Q Consensus       706 ~aPE~~~~~~~~~~~Dv~slG~il~el~tg  735 (840)
                      ..|+.+....  -..|.|-||++++|++.|
T Consensus       172 ~~P~~~~~s~--~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  172 DDPEEIDPSE--WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             cChhhcCccc--cchhhhhHHHHHHHHhCc
Confidence            6666443222  346999999999999999

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=6.4e-11  Score=111.86  Aligned_cols=126  Identities=25%  Similarity=0.284  Sum_probs=43.9

Q ss_pred             ccccCCceEEeeCceeeccCCcccc-CCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhh-cccCcc
Q 003199          258 ARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI-YRAISL  335 (840)
Q Consensus       258 ~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L  335 (840)
                      .+..++++|+|++|+|+ .+ +.+. .+.+|+.|+|++|.|+...  .+..++.|+.|++++|+|+.. +..+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             ccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence            34456788888888887 33 3454 4778888888888887542  466778888888888888744 3334 357788


Q ss_pred             cEEEcCCCccCCCC-CCcccCccccchhcccCCccCCCc---chhcccccCCCEEEC
Q 003199          336 VKIDLSDNLLSGPI-PSGIGNLKKLNLLMLQSNKLNSSI---PNSLSSLKSLNVLDL  388 (840)
Q Consensus       336 ~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~l  388 (840)
                      +.|+|++|+|...- -..++.+++|+.|+|.+|+++...   ...+..+|+|+.||-
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            88888888886421 134556777777777777776331   123566777777653

>PLN03150 hypothetical protein; Provisional

Probab=99.08  E-value=1.2e-10  Score=134.87  Aligned_cols=112  Identities=37%  Similarity=0.578  Sum_probs=103.5

Q ss_pred             CCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECc
Q 003199          310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLS  389 (840)
Q Consensus       310 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  389 (840)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCchhhcc--CCCeEEccCCCCcCcCC
Q 003199          390 NNLLTGYIPESLCEL--LPNSINFSNNRLSGPIP  421 (840)
Q Consensus       390 ~N~l~~~~p~~~~~~--~~~~l~l~~N~l~~~~p  421 (840)
                      +|+|+|.+|..+...  ....+++.+|...|..|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999998765  34578999998766555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=7.2e-12  Score=125.37  Aligned_cols=216  Identities=22%  Similarity=0.282  Sum_probs=132.8

Q ss_pred             CCCCCCCCCCEEecCCCcCcc----cCCccccCCCCCCEEeCCCCCCCccC-CCCc------ccccccccccEEEecCcc
Q 003199           11 PDFSPMQNLRRLDLSNNLFTG----QFPLSVFNLTNLEVLSFNENPGFKLW-KLPE------SSIFRLTKLRIMVLATCA   79 (840)
Q Consensus        11 ~~~~~l~~L~~L~Ls~n~i~~----~~p~~~~~l~~L~~L~L~~N~~~~l~-~l~~------~~~~~l~~L~~L~L~~n~   79 (840)
                      +....+..++.|+||+|.|..    .+...+...++|++-++++--..++. .+|+      .++...++|++|+|++|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            346678899999999999873    34556777888999998875211211 2221      334456788888888888


Q ss_pred             ccccCCc----cccCCCCCcEEEccCCcccccCchh-------------hhcCCCCCeeecccCcccccc---CCcccCC
Q 003199           80 LHGQIPA----SIGNVTSLTDLELTGNFITGHIPPE-------------IGLLKNLRQLELYYNQQLAGT---IPEELGN  139 (840)
Q Consensus        80 l~~~~~~----~~~~l~~L~~L~L~~n~i~~~~p~~-------------~~~l~~L~~L~L~~n~~~~~~---~p~~l~~  139 (840)
                      +....+.    .+..+..|++|.|.+|.+...--..             ...-++|+++...+|++..+.   +...|..
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            8644333    3455678888888888887321111             223456777777777622111   1123555


Q ss_pred             CCCCCeeeccCCccccc----CCccccCCCCCcEEEeeccccccc----cchhhhcCCCCCEEEccCCcCcccCCcCC--
Q 003199          140 LTELTDLDMSVNHLSGK----IPESILRLPKLRVLQLYNNSLSGE----ISSVIANSTTLTMLSLYDNSLTGEVPQDL--  209 (840)
Q Consensus       140 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~l--  209 (840)
                      .+.|+.+.++.|.|...    ....|..+++|++|||+.|-++..    ....++.+++|++|++++|.+......+|  
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            66777777777776532    123456677777777777776532    23455666677777777777764332222  


Q ss_pred             ---CCCCCcceecccccccc
Q 003199          210 ---GQWSPLVVLDLSENKLS  226 (840)
Q Consensus       210 ---~~l~~L~~L~L~~N~l~  226 (840)
                         ...++|+.|.|.+|.|+
T Consensus       264 al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHhccCCCCceeccCcchhH
Confidence               22566777777777665

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.01  E-value=1.9e-09  Score=109.25  Aligned_cols=144  Identities=19%  Similarity=0.205  Sum_probs=108.3

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC--CCcceeeeEEecCc---
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH--KNIVKLYCYFSSLY---  605 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~---  605 (840)
                      .+.|+.|..+.||++...+|+.+++|........         .....+..|+++++.+.+  .++.+++.+.....   
T Consensus         3 ~~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~---------~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~   73 (223)
T cd05154           3 VRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL---------PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLG   73 (223)
T ss_pred             ceecCCCccceEEEEEecCCcceEEEeCCCcccC---------cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccC
Confidence            3568999999999998776789999987433211         123457789999999875  44677777776542   


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcC--------------------------------
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL--------------------------------  653 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~--------------------------------  653 (840)
                      ..++||||+++.++.+.+..  ..++......++.++++++.+||+..                                
T Consensus        74 ~~~~v~e~i~G~~l~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (223)
T cd05154          74 TPFYVMERVDGRVLRDRLLR--PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRT  151 (223)
T ss_pred             CceEEEEEeCCEecCCCCCC--CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcc
Confidence            56899999999888775532  24667777788888888888888521                                


Q ss_pred             ---------------------CCCeEecCCCCCCEEEcC--CCCCeeecccchhh
Q 003199          654 ---------------------LSPIIHRDIKSTNILLDV--NYQPKVADFGIAKV  685 (840)
Q Consensus       654 ---------------------~~~ivH~Dlk~~Nill~~--~~~~kl~Dfg~a~~  685 (840)
                                           ...++|+|++|.||+++.  ++.+.|+||+.+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         152 DEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             cccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                                 245799999999999998  56688999998753

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.97  E-value=4.7e-09  Score=101.03  Aligned_cols=135  Identities=26%  Similarity=0.280  Sum_probs=87.4

Q ss_pred             EEEEEEeCCCcEEEEEEeccccccccc----------------CchhhHHHHHHHHHHHHHHhccCCC--CcceeeeEEe
Q 003199          541 TVYKIDLNSGEVVAVKKLWSQRTKVSA----------------SDTDQLQLDKGLKTEVETLGNIRHK--NIVKLYCYFS  602 (840)
Q Consensus       541 ~Vy~~~~~~~~~vavK~~~~~~~~~~~----------------~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~~~  602 (840)
                      .||.|...+|..||||..+........                .............+|++.|.++..-  ++.+++.+. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            389998888999999998643222100                0122333456778999999999765  566666543 


Q ss_pred             cCccceEEEeecC--CCChHHHhhcCCCCCChHHHHHHHHHHHHHHHH-HhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          603 SLYCNLLVYEYMP--NGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY-LHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       603 ~~~~~~lV~e~~~--~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~-LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                         ...+||||++  |..+.......   ++......++.+++..+.. +|.   .|+||+|+.+.||+++++ .+.++|
T Consensus        80 ---~~~ivME~I~~~G~~~~~l~~~~---~~~~~~~~~~~~il~~~~~~~~~---~givHGDLs~~NIlv~~~-~~~iID  149 (188)
T PF01163_consen   80 ---RNVIVMEYIGEDGVPLPRLKDVD---LSPEEPKELLEEILEEIIKMLHK---AGIVHGDLSEYNILVDDG-KVYIID  149 (188)
T ss_dssp             ---TTEEEEE--EETTEEGGCHHHCG---GGGSTHHHHHHHHHHHHHHHHHC---TTEEESS-STTSEEEETT-CEEE--
T ss_pred             ---CCEEEEEecCCCccchhhHHhcc---ccchhHHHHHHHHHHHHHHHHHh---cCceecCCChhhEEeecc-eEEEEe
Confidence               4579999998  54454433321   2245567788888886666 467   899999999999999988 999999


Q ss_pred             ccchhhh
Q 003199          680 FGIAKVL  686 (840)
Q Consensus       680 fg~a~~~  686 (840)
                      ||.+...
T Consensus       150 f~qav~~  156 (188)
T PF01163_consen  150 FGQAVDS  156 (188)
T ss_dssp             GTTEEET
T ss_pred             cCcceec
Confidence            9988543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.97  E-value=4.5e-10  Score=132.55  Aligned_cols=129  Identities=26%  Similarity=0.280  Sum_probs=76.0

Q ss_pred             ccccEEEecCccccccCCccccCCCCCcEEEccCCc--ccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCe
Q 003199           68 TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNF--ITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTD  145 (840)
Q Consensus        68 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~  145 (840)
                      ...+...+-+|.+. .++.... .+.|++|-+.+|.  +....++.|..++.|+.|||++|. -.+.+|..++.|-+|+.
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhc
Confidence            34455555555554 2222222 2356666666664  443334446666666666666664 44566666666677777


Q ss_pred             eeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCc
Q 003199          146 LDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNS  200 (840)
Q Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  200 (840)
                      |+|+++.++ .+|..+.+++.|.+|++..+.-...+++....+.+|++|.+..-.
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            777777766 566666777777777776665444446666666777777665543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.91  E-value=3.4e-10  Score=128.68  Aligned_cols=250  Identities=20%  Similarity=0.253  Sum_probs=160.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.+...+.+.+|+++.+.-+.-. .|...+.|+......-..       ...+....+-.+.-...||-++...--+.-.
T Consensus       804 d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~-------~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~r  876 (1205)
T KOG0606|consen  804 DGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRT-------NDYESIRSKSNILITPRSPAVVRSFPSFPCR  876 (1205)
T ss_pred             ccceecccccCCCCcccccCCccccccccchhhhccchhhcc-------ccccccCCccCccccCCCCceecccCCCCCC
Confidence            34445567889999999887444 344444443311110000       0011111111112222345555444334455


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|++|+.+++|...++... ..+.+..+.....+..+.+|||.   ..++|||++|.|.+...+++.+++|||...
T Consensus       877 sP~~L~~~~~~~~~~~Skl~~~~-~~saepaRs~i~~~vqs~e~L~s---~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~  952 (1205)
T KOG0606|consen  877 SPLPLVGHYLNGGDLPSKLHNSG-CLSAEPARSPILERVQSLESLHS---SLRKHRDLKPDSLLIAYDGHRPLTDFGTLS  952 (1205)
T ss_pred             CCcchhhHHhccCCchhhhhcCC-CcccccccchhHHHHhhhhcccc---chhhcccccccchhhcccCCcccCcccccc
Confidence            66789999999999999998765 35555666677788899999998   669999999999999999999999998433


Q ss_pred             hhhcc---------------------C-------CCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCC
Q 003199          685 VLQAR---------------------G-------GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR  736 (840)
Q Consensus       685 ~~~~~---------------------~-------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~  736 (840)
                      .....                     .       +.........||+.|.+||...+......+|+|++|+.++|.++|.
T Consensus       953 ~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~ 1032 (1205)
T KOG0606|consen  953 KVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGI 1032 (1205)
T ss_pred             ccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCC
Confidence            22110                     0       0011234467999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcchhhhhhhhhccccchhhhccc--ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH
Q 003199          737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK--KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN  801 (840)
Q Consensus       737 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~  801 (840)
                      .||.+......               +..+...  .++...........+++...+..+|.+|-.|.
T Consensus      1033 pp~na~tpq~~---------------f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1033 PPFNAETPQQI---------------FENILNRDIPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             CCCCCcchhhh---------------hhccccCCCCCCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            99987533211               1111111  11222223334445566677788888887766

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.86  E-value=9.2e-08  Score=98.61  Aligned_cols=257  Identities=15%  Similarity=0.155  Sum_probs=155.0

Q ss_pred             ccCeeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeE------E
Q 003199          530 EKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCY------F  601 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~------~  601 (840)
                      ..+.||+|+.+.+|-. ...  . .+.|+++.+....          ..   ..++.|... .||-+-.-+.|      .
T Consensus        15 ~gr~LgqGgea~ly~l~e~~--d-~VAKIYh~Pppa~----------~a---qk~a~la~~p~~p~~~~rvaWPqa~L~G   78 (637)
T COG4248          15 PGRPLGQGGEADLYTLGEVR--D-QVAKIYHAPPPAA----------QA---QKVAELAATPDAPLLNYRVAWPQATLHG   78 (637)
T ss_pred             CCccccCCccceeeecchhh--c-hhheeecCCCchH----------HH---HHHHHhccCCCCcchhhhhcccHHHhhC
Confidence            4567999999999974 332  2 3457776554321          11   123334443 46544331221      1


Q ss_pred             ecC-ccceEEEeecCCCCh-HHHh-----hcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          602 SSL-YCNLLVYEYMPNGNL-WDAL-----HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       602 ~~~-~~~~lV~e~~~~gsL-~~~l-----~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      .+. ....+.|..+++.-= ..+.     ++.....+|.-.+.+++.+|.+.+.||.   .|.+-+|+.++|+|+.+++.
T Consensus        79 ~~~~~~iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~---~Gh~vGDVn~~~~lVsd~~~  155 (637)
T COG4248          79 GRRGKVIGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHE---HGHVVGDVNQNSFLVSDDSK  155 (637)
T ss_pred             CCccceeEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHh---cCCcccccCccceeeecCce
Confidence            122 224567777765421 1111     1223568999999999999999999999   99999999999999999999


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhC-CCCCCCCCC--CC
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITG-RKPVEDDFG--DN  746 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg-~~p~~~~~~--~~  746 (840)
                      +.+.|=..-...    ..+.......|...|.+||.-.     +-..+...|-|.+|+++++++.| ++||.+-..  +.
T Consensus       156 V~LVdsDsfqi~----~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~a  231 (637)
T COG4248         156 VVLVDSDSFQIN----ANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDA  231 (637)
T ss_pred             EEEEcccceeec----cCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCC
Confidence            999876543322    2344555677899999999643     33457789999999999999985 999976321  10


Q ss_pred             cchhh--hhhh-hhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCC--CCCCCCHHHHHHHhhh
Q 003199          747 KNIIY--WVSI-KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKS--PATRPTMNEVVQLLAE  809 (840)
Q Consensus       747 ~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~d--P~~Rps~~evl~~L~~  809 (840)
                      ..-..  .... -....+............-+.-....+..+..+|+...  +.-|||++-.+..|.+
T Consensus       232 p~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~a  299 (637)
T COG4248         232 PNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDA  299 (637)
T ss_pred             CCcchhhhhcceeeechhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHH
Confidence            00000  0000 00000000000000011111223355666777898653  6789999988777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=2.2e-09  Score=83.23  Aligned_cols=60  Identities=37%  Similarity=0.514  Sum_probs=33.5

Q ss_pred             CCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcC
Q 003199          142 ELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSL  201 (840)
Q Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  201 (840)
                      +|++|++++|+++.+.+..|.++++|++|++++|.++.+.++.|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555544445555555555555555555555555555555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2.4e-09  Score=83.04  Aligned_cols=61  Identities=36%  Similarity=0.464  Sum_probs=55.5

Q ss_pred             CCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccc
Q 003199          165 PKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKL  225 (840)
Q Consensus       165 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l  225 (840)
                      ++|++|++++|+|+.+.++.|.++++|++|++++|+++.+.+..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999988888999999999999999999988888999999999999999975

...

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.79  E-value=7.3e-08  Score=98.75  Aligned_cols=150  Identities=14%  Similarity=0.063  Sum_probs=102.1

Q ss_pred             CeeeccCCcEEEEEEeCCCcEEEEEEeccccccc-ccCchhhHHHHHHHHHHHHHHhccCCC--CcceeeeEEec-----
Q 003199          532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKV-SASDTDQLQLDKGLKTEVETLGNIRHK--NIVKLYCYFSS-----  603 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~~~~-----  603 (840)
                      +.+-......|+++.+. |+.|.||+........ ...-.........+.+|...+.++...  ..+.++++...     
T Consensus        28 e~v~~~~~rrvvr~~~~-g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         28 EVFRELEGRRTLRFELA-GKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             cEEecCCCceEEEEEEC-CEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            45555555567787664 7899999874333110 000000001112477899988888533  34455666543     


Q ss_pred             CccceEEEeecCCC-ChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-------CCC
Q 003199          604 LYCNLLVYEYMPNG-NLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-------NYQ  674 (840)
Q Consensus       604 ~~~~~lV~e~~~~g-sL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-------~~~  674 (840)
                      ....++|+|++++. +|.+++... ....+...+..++.+++..+..||.   .||+|+|++++|||++.       ++.
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~---~Gi~HgDL~~~NiLl~~~~~~~~~~~~  183 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHA---AGINHRDCYICHFLLHLPFPGREEDLK  183 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHH---CcCccCCCChhhEEEeccccCCCCCce
Confidence            23468999999886 788887532 1234566778899999999999999   99999999999999975       467


Q ss_pred             Ceeecccchhh
Q 003199          675 PKVADFGIAKV  685 (840)
Q Consensus       675 ~kl~Dfg~a~~  685 (840)
                      +.++||+.+..
T Consensus       184 ~~LIDl~r~~~  194 (268)
T PRK15123        184 LSVIDLHRAQI  194 (268)
T ss_pred             EEEEECCcccc
Confidence            89999998753

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.67  E-value=1.4e-07  Score=92.88  Aligned_cols=142  Identities=23%  Similarity=0.208  Sum_probs=99.6

Q ss_pred             ccCeeeccCCcEEEEEEeCCCcEEEEEEeccccccccc------------CchhhHHHHHHHHHHHHHHhccCCC--Ccc
Q 003199          530 EKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSA------------SDTDQLQLDKGLKTEVETLGNIRHK--NIV  595 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~------------~~~~~~~~~~~~~~E~~~l~~l~h~--niv  595 (840)
                      ....||-|.-+.||.|....|.++|||.=+..+.....            ...+.........+|.++|.++...  .+.
T Consensus        95 iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP  174 (304)
T COG0478          95 IGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVP  174 (304)
T ss_pred             hccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCCC
Confidence            45789999999999999889999999964333222110            0011233445678899999998654  666


Q ss_pred             eeeeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          596 KLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       596 ~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      +.+++    ....+||||++|--|...-      ++.+....++..|++-+..+-.   .|+||+|+++-||+++++|.+
T Consensus       175 ~P~~~----nRHaVvMe~ieG~eL~~~r------~~~en~~~il~~il~~~~~~~~---~GiVHGDlSefNIlV~~dg~~  241 (304)
T COG0478         175 KPIAW----NRHAVVMEYIEGVELYRLR------LDVENPDEILDKILEEVRKAYR---RGIVHGDLSEFNILVTEDGDI  241 (304)
T ss_pred             Ccccc----ccceeeeehcccceeeccc------CcccCHHHHHHHHHHHHHHHHH---cCccccCCchheEEEecCCCE
Confidence            66654    3457999999886654322      1233344455556655555556   899999999999999999999


Q ss_pred             eeecccchh
Q 003199          676 KVADFGIAK  684 (840)
Q Consensus       676 kl~Dfg~a~  684 (840)
                      +++||=-+.
T Consensus       242 ~vIDwPQ~v  250 (304)
T COG0478         242 VVIDWPQAV  250 (304)
T ss_pred             EEEeCcccc
Confidence            999996554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.65  E-value=5.2e-10  Score=121.65  Aligned_cols=114  Identities=27%  Similarity=0.336  Sum_probs=78.6

Q ss_pred             cCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcc
Q 003199          252 VLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYR  331 (840)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  331 (840)
                      .+..++.-++.|+.|+|++|+++.  .+.+..+++|++|||++|.+..++--...++. |+.|.+.+|.++..  ..+.+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence            344556667778888888888863  23677788888888888888754333333344 88888888887743  35667


Q ss_pred             cCcccEEEcCCCccCCCCC-CcccCccccchhcccCCccC
Q 003199          332 AISLVKIDLSDNLLSGPIP-SGIGNLKKLNLLMLQSNKLN  370 (840)
Q Consensus       332 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~  370 (840)
                      +.+|+.||+|+|-|.+.-. ..++.|..|+.|+|.+|.+-
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7788888888887765322 23556778888888888886

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.62  E-value=1.4e-09  Score=94.27  Aligned_cols=137  Identities=23%  Similarity=0.306  Sum_probs=88.9

Q ss_pred             ccEEeccCCcccccCCc---ccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhc
Q 003199          287 VSIIDLSYNSFSGPIAN---TVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLM  363 (840)
Q Consensus       287 L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  363 (840)
                      +..+||+.|++.. +++   .+.....|+..+|++|.+....+......+.++.|+|++|+|+ .+|.+++.++.|+.|+
T Consensus        29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            3445555555531 222   2233445556677777776443333344557788888888887 5777788888888888


Q ss_pred             ccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCCCCcCcCCcccccC
Q 003199          364 LQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKE  427 (840)
Q Consensus       364 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~~~~  427 (840)
                      ++.|.+. ..|..+..|.+|..||.-+|.+. .||..+... .+...++.++++.+..|..++.+
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~  169 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL  169 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence            8888886 67777777888888888888887 566553222 23345667777777777655443

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.59  E-value=5e-07  Score=95.91  Aligned_cols=167  Identities=23%  Similarity=0.300  Sum_probs=124.0

Q ss_pred             CCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe----cCccceEEEe
Q 003199          538 GSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS----SLYCNLLVYE  612 (840)
Q Consensus       538 ~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~----~~~~~~lV~e  612 (840)
                      -..+.|++ ...||..|+.|+++..+.....          ....-+++++++.|.|+|++...+.    .+...++||+
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~n----------k~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYD  357 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTN----------KDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYD  357 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcc----------cchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEe
Confidence            34678998 4458999999999555433211          1123477889999999999988775    2445689999


Q ss_pred             ecCC-CChHHHhhc--------------CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          613 YMPN-GNLWDALHK--------------GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       613 ~~~~-gsL~~~l~~--------------~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      |.++ ++|.+.--.              .....++...|.++.|+..||.++|+   .|...+-|.+++|+++.+..++|
T Consensus       358 YyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHs---sGLAck~L~~~kIlv~G~~RIri  434 (655)
T KOG3741|consen  358 YYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHS---SGLACKTLDLKKILVTGKMRIRI  434 (655)
T ss_pred             cCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHh---cCceeecccHhHeEeeCcceEEE
Confidence            9986 466653321              12356789999999999999999999   89999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCC
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRK  737 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~  737 (840)
                      +..|....+..+.               .  |-+.+   -.+-|.-.||.+++.+.||..
T Consensus       435 S~C~i~Dvl~~d~---------------~--~~le~---~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  435 SGCGIMDVLQEDP---------------T--EPLES---QQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             ecccceeeecCCC---------------C--cchhH---HhhhhHHHHHHHHHHHhhccc
Confidence            9888765543311               0  11111   236788899999999999954

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.55  E-value=3.8e-08  Score=108.31  Aligned_cols=155  Identities=23%  Similarity=0.366  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCC-----CC-cceecccccccccCccccc
Q 003199          639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG-----KD-STTTVIAGTYGYLAPEYAY  712 (840)
Q Consensus       639 ~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~-----~~-~~~~~~~gt~~y~aPE~~~  712 (840)
                      +.+++.|+.|+|..  .++||++|.|++|.++..+..||+.|+.+........     .+ ...........|.|||++.
T Consensus       105 l~~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            34556999999985  7899999999999999999999999998755432111     00 1111223446799999999


Q ss_pred             cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCC
Q 003199          713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSK  792 (840)
Q Consensus       713 ~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~  792 (840)
                      +...+.++|+||+|+++|.+..|..+.-...+.....    .....       ..+......-.....++.+=+.+++..
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~----~~~~~-------~~~~~~~~~s~~~p~el~~~l~k~l~~  251 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSY----SFSRN-------LLNAGAFGYSNNLPSELRESLKKLLNG  251 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhccCCcchh----hhhhc-------ccccccccccccCcHHHHHHHHHHhcC
Confidence            9889999999999999999995444432211111000    00000       001111111122334555556678899


Q ss_pred             CCCCCCCHHHHHHH
Q 003199          793 SPATRPTMNEVVQL  806 (840)
Q Consensus       793 dP~~Rps~~evl~~  806 (840)
                      ++..||++.++...
T Consensus       252 ~~~~rp~~~~l~~~  265 (700)
T KOG2137|consen  252 DSAVRPTLDLLLSI  265 (700)
T ss_pred             CcccCcchhhhhcc
Confidence            99999987776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=8.8e-09  Score=100.96  Aligned_cols=62  Identities=21%  Similarity=0.223  Sum_probs=27.5

Q ss_pred             CcccEEeccCCcccccCC-cccCCCCCCceeecccceeeecc-chhhcccCcccEEEcCCCccC
Q 003199          285 PHVSIIDLSYNSFSGPIA-NTVGNARNLSELFMQRNQISGFI-PSEIYRAISLVKIDLSDNLLS  346 (840)
Q Consensus       285 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~  346 (840)
                      |++..+.+..|.+..... ..+..++.+.-|+|+.|+|.+.. -+++.+++.|..|.+++|.|.
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            344444444454433221 22333444445555555554321 123444455555555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.54  E-value=2.7e-09  Score=92.47  Aligned_cols=140  Identities=24%  Similarity=0.192  Sum_probs=102.6

Q ss_pred             CCceEEeeCceeeccCCcccc---CCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEE
Q 003199          262 NLLRFRVSNNHLEGSIPEGIL---SLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKI  338 (840)
Q Consensus       262 ~L~~L~l~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  338 (840)
                      .+..++|++++|. .+++...   ....|+..+|++|.+...++..-...+.++.|+|++|+|. .+|.++..++.|+.|
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            4556777777775 4454443   4456777889999998766665556678899999999998 678889999999999


Q ss_pred             EcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhccC
Q 003199          339 DLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELL  405 (840)
Q Consensus       339 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~  405 (840)
                      +++.|.+. ..|..+..+.+|-.|+..+|.+. .+|-.+-.-...-..++.+++|.+.-|.-+..+.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~k  170 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQALK  170 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccccC
Confidence            99999998 67777777899999999999887 4444433223344455688888887776555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=2.3e-08  Score=98.08  Aligned_cols=211  Identities=22%  Similarity=0.230  Sum_probs=119.4

Q ss_pred             CCCeeeccCCcccccCC-ccc-cCCCCCcEEEeecccccc--ccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcce
Q 003199          142 ELTDLDMSVNHLSGKIP-ESI-LRLPKLRVLQLYNNSLSG--EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVV  217 (840)
Q Consensus       142 ~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~  217 (840)
                      -++-|.+.++.|..... ..| ..++.++.|||.+|.|++  .+...+.++|.|+.|+|+.|++...+...-..+.+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            34455566666653221 112 235678888888888763  34556778888888888888887544333245677888


Q ss_pred             eccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcc
Q 003199          218 LDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSF  297 (840)
Q Consensus       218 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  297 (840)
                      |-|.+..+.....                       ...+..+|.+++|.|+.|.+.              .+++..|.+
T Consensus       126 lVLNgT~L~w~~~-----------------------~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~  168 (418)
T KOG2982|consen  126 LVLNGTGLSWTQS-----------------------TSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCI  168 (418)
T ss_pred             EEEcCCCCChhhh-----------------------hhhhhcchhhhhhhhccchhh--------------hhccccccc
Confidence            8888777653211                       122334445555555555332              122222222


Q ss_pred             cccCCc--ccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCC-CCcccCccccchhcccCCccCCC-c
Q 003199          298 SGPIAN--TVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPI-PSGIGNLKKLNLLMLQSNKLNSS-I  373 (840)
Q Consensus       298 ~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~  373 (840)
                      ....+.  .+...+.+..++++-|++..       .++++..+-+..|.|...- -..+..++.+.-|+|+.|+|.+- -
T Consensus       169 e~~s~~v~tlh~~~c~~~~w~~~~~l~r-------~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas  241 (418)
T KOG2982|consen  169 EDWSTEVLTLHQLPCLEQLWLNKNKLSR-------IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS  241 (418)
T ss_pred             cccchhhhhhhcCCcHHHHHHHHHhHHh-------hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH
Confidence            211111  11122333334444444432       2345666667777665322 23455677778899999988531 1


Q ss_pred             chhcccccCCCEEECcCcccccc
Q 003199          374 PNSLSSLKSLNVLDLSNNLLTGY  396 (840)
Q Consensus       374 ~~~~~~l~~L~~L~l~~N~l~~~  396 (840)
                      -+++..++.|..|-+++|+|...
T Consensus       242 vD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  242 VDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             HHHHcCCchhheeeccCCccccc
Confidence            34677888899999999988743

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.53  E-value=1.1e-08  Score=98.98  Aligned_cols=222  Identities=22%  Similarity=0.270  Sum_probs=115.8

Q ss_pred             CCCCcEEEccCCcccccCc----hhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCC
Q 003199           91 VTSLTDLELTGNFITGHIP----PEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPK  166 (840)
Q Consensus        91 l~~L~~L~L~~n~i~~~~p----~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  166 (840)
                      +..+..++||+|.|...-.    ..+.+-.+|+..+++.--  ++...+.+..            ++. .+-.++.+||+
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f--tgr~kde~~~------------~L~-~Ll~aLlkcp~   93 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF--TGRDKDELYS------------NLV-MLLKALLKCPR   93 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh--hcccHHHHHH------------HHH-HHHHHHhcCCc
Confidence            5667777777777774433    334445666666665432  2222111100            000 11123344455


Q ss_pred             CcEEEeeccccccccc----hhhhcCCCCCEEEccCCcCcccCCcC-------------CCCCCCcceeccccccccccC
Q 003199          167 LRVLQLYNNSLSGEIS----SVIANSTTLTMLSLYDNSLTGEVPQD-------------LGQWSPLVVLDLSENKLSGPL  229 (840)
Q Consensus       167 L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~-------------l~~l~~L~~L~L~~N~l~~~~  229 (840)
                      |+..+||.|.+....|    +.++..+.|.+|.|++|.+.-+.-..             ...-+.|++++...|++....
T Consensus        94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238          94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence            5555555554442222    23444555666666666554211111             122344555555555554110


Q ss_pred             CccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccC-----CccccCCCcccEEeccCCccccc----
Q 003199          230 PAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSI-----PEGILSLPHVSIIDLSYNSFSGP----  300 (840)
Q Consensus       230 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~----  300 (840)
                      ..                    .....|..-.+|+.+.+..|.|.-..     -..+..+.+|+.|||.+|-++..    
T Consensus       174 ~~--------------------~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         174 KE--------------------LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             HH--------------------HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            00                    11122334457888888888876110     11234467889999999988742    


Q ss_pred             CCcccCCCCCCceeecccceeeeccchhhcc------cCcccEEEcCCCccCC
Q 003199          301 IANTVGNARNLSELFMQRNQISGFIPSEIYR------AISLVKIDLSDNLLSG  347 (840)
Q Consensus       301 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~  347 (840)
                      ....+..++.|++|.+.+|-++.....++.+      .++|..|-+.+|...+
T Consensus       234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            3345667778888888888887655444332      3466666666666543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.50  E-value=1.5e-06  Score=86.25  Aligned_cols=106  Identities=25%  Similarity=0.285  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHhccC--CCCcceeeeEEecCc----cceEEEeecCCC-ChHHHhhcCCCCCChHHHHHHHHHHHHHHHH
Q 003199          576 DKGLKTEVETLGNIR--HKNIVKLYCYFSSLY----CNLLVYEYMPNG-NLWDALHKGLVHLDWPTRHKIAFGVAQGLAY  648 (840)
Q Consensus       576 ~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~----~~~lV~e~~~~g-sL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~  648 (840)
                      .....+|...+..+.  .-.+.+.+++.....    ..++|+|++++. +|.+++.... ..+......++.+++..++-
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~-~~~~~~~~~ll~~l~~~i~~  133 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWE-QLDPSQRRELLRALARLIAK  133 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhc-ccchhhHHHHHHHHHHHHHH
Confidence            345677888877775  344566677665422    348999999884 7988887643 25666788999999999999


Q ss_pred             HhhcCCCCeEecCCCCCCEEEcCCC---CCeeecccchhh
Q 003199          649 LHHGLLSPIIHRDIKSTNILLDVNY---QPKVADFGIAKV  685 (840)
Q Consensus       649 LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~Dfg~a~~  685 (840)
                      ||.   .||+|+|+++.|||++.+.   .+.++||+-++.
T Consensus       134 lH~---~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  134 LHD---AGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             HHH---CcCCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            999   9999999999999999887   789999997754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	840
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-47
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		3e-47
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-38
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-38
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-36
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-36
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-36
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		9e-34
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-33
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		6e-33
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-26
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-26
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		3e-24
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		6e-24
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-19
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		1e-19
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		3e-19
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		5e-19
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		7e-19
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		7e-19
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		8e-19
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		8e-19
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-18
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-18
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		1e-18
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-18
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		1e-18
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		1e-18
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		1e-18
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-18
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		2e-18
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		2e-18
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-18
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		2e-18
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		2e-18
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		3e-18
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		3e-18
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		3e-18
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-18
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-18
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-18
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-18
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-18
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		3e-18
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-18
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		3e-18
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-18
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-18
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-18
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		3e-18
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		4e-18
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		4e-18
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		4e-18
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		5e-18
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		5e-18
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		5e-18
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		5e-18
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		5e-18
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		6e-18
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		6e-18
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		7e-18
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		8e-18
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		8e-18
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		8e-18
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		9e-18
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		9e-18
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		1e-17
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		1e-17
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		1e-17
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		1e-17
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		1e-17
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		1e-17
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		1e-17
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		1e-17
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		1e-17
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		2e-17
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		2e-17
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		2e-17
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		2e-17
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		2e-17
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		2e-17
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-17
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		2e-17
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		2e-17
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		2e-17
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		3e-17
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		3e-17
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-17
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		3e-17
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		3e-17
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		3e-17
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		4e-17
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		4e-17
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		4e-17
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		4e-17
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		4e-17
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		5e-17
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		7e-17
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		7e-17
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		1e-16
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		2e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-05
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		2e-16
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		3e-16
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		3e-16
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		3e-16
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		3e-16
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		4e-16
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		7e-16
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		7e-16
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		8e-16
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		9e-16
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		1e-15
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		1e-15
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		1e-15
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		2e-15
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		2e-15
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-15
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		2e-15
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		3e-15
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		3e-15
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		3e-15
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		4e-15
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		4e-15
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		4e-15
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		5e-15
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		5e-15
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		5e-15
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		6e-15
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		6e-15
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		6e-15
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		8e-15
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		9e-15
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		9e-15
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		9e-15
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		9e-15
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		9e-15
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		9e-15
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		9e-15
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		1e-14
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		1e-14
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		1e-14
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		1e-14
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		1e-14
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		1e-14
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		1e-14
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		1e-14
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		1e-14
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		1e-14
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		1e-14
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		1e-14
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		1e-14
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		1e-14
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		1e-14
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		1e-14
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		1e-14
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		1e-14
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		1e-14
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		2e-14
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		2e-14
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-14
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		2e-14
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		2e-14
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		2e-14
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-14
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		2e-14
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		2e-14
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		2e-14
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		3e-14
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		3e-14
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-14
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-14
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		3e-14
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		3e-14
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		3e-14
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		3e-14
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-14
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-14
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		3e-14
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		3e-14
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		3e-14
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		3e-14
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		3e-14
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		5e-14
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		5e-14
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		5e-14
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		5e-14
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		5e-14
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		5e-14
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		5e-14
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		5e-14
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		5e-14
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		6e-14
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		6e-14
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		6e-14
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		6e-14
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		6e-14
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		6e-14
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		6e-14
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		6e-14
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		6e-14
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		6e-14
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		6e-14
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		7e-14
3g51_A	325	Structural Diversity Of The Active Conformation Of		7e-14
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		7e-14
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		7e-14
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		7e-14
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		7e-14
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		7e-14
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		8e-14
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		8e-14
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		8e-14
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		8e-14
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		8e-14
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		9e-14
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		9e-14
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		1e-13
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		1e-13
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		1e-13
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-13
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		1e-13
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		1e-13
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		1e-13
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-13
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		1e-13
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-13
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		1e-13
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-13
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		2e-13
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-13
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-13
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		2e-13
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		2e-13
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		2e-13
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		2e-13
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		2e-13
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		2e-13
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		2e-13
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-13
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		2e-13
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		3e-13
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		3e-13
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		3e-13
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		3e-13
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		3e-13
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		3e-13
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		3e-13
3a4o_X	286	Lyn Kinase Domain Length = 286		3e-13
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		3e-13
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		3e-13
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		3e-13
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		3e-13
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		3e-13
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		4e-13
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		4e-13
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		4e-13
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		4e-13
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		4e-13
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		4e-13
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-13
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		4e-13
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		4e-13
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		4e-13
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		4e-13
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		5e-13
3a7f_A	303	Human Mst3 Kinase Length = 303		5e-13
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		5e-13
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		5e-13
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		5e-13
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		5e-13
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-13
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		5e-13
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		5e-13
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		5e-13
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		5e-13
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		5e-13
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		5e-13
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		5e-13
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		5e-13
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		5e-13
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		6e-13
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		6e-13
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		6e-13
2pl0_A	289	Lck Bound To Imatinib Length = 289		6e-13
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		6e-13
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		8e-13
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		8e-13
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		8e-13
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		8e-13
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		8e-13
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		8e-13
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		8e-13
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		8e-13
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		8e-13
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		9e-13
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		9e-13
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		9e-13
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		9e-13
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		9e-13
4fie_A	423	Full-Length Human Pak4 Length = 423		9e-13
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		9e-13
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		9e-13
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		1e-12
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		1e-12
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		1e-12
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		1e-12
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		1e-12
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		1e-12
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		1e-12
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-12
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		1e-12
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		1e-12
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		1e-12
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		1e-12
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		1e-12
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		1e-12
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		1e-12
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		1e-12
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-12
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		1e-12
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		1e-12
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		1e-12
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		1e-12
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		1e-12
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		1e-12
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		1e-12
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-12
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		2e-12
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-12
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		2e-12
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-12
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		2e-12
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		2e-12
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		2e-12
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-12
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		2e-12
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		2e-12
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		2e-12
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-12
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		2e-12
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		2e-12
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		2e-12
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-12
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-12
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		2e-12
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		3e-12
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		3e-12
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		3e-12
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		3e-12
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-12
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-12
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		3e-12
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		3e-12
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		3e-12
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		3e-12
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		3e-12
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		3e-12
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		3e-12
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-12
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		3e-12
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		4e-12
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		4e-12
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		4e-12
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		4e-12
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		4e-12
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		4e-12
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-12
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		4e-12
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		4e-12
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		4e-12
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		4e-12
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		4e-12
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		5e-12
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		5e-12
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		5e-12
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		5e-12
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		5e-12
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		5e-12
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		5e-12
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		5e-12
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		5e-12
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		5e-12
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		5e-12
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		5e-12
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		5e-12
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		5e-12
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		5e-12
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		6e-12
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		6e-12
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		6e-12
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		7e-12
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		7e-12
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-12
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		7e-12
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		7e-12
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		7e-12
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		7e-12
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		7e-12
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		8e-12
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		8e-12
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		8e-12
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		8e-12
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		8e-12
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		9e-12
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		1e-11
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		1e-11
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-11
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		1e-11
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		1e-11
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		1e-11
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		1e-11
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-11
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		2e-11
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		2e-11
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		2e-11
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-11
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		2e-11
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		2e-11
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		2e-11
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		2e-11
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		3e-11
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-11
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		3e-11
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		3e-11
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		3e-11
3my0_A	305	Crystal Structure Of The Acvrl1 (Alk1) Kinase Domai		4e-11
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		4e-11
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		4e-11
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		4e-11
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		4e-11
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		4e-11
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		4e-11
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		4e-11
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		4e-11
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		4e-11
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		5e-11
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		5e-11
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		5e-11
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		5e-11
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		5e-11
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		5e-11
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		5e-11
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		5e-11
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		6e-11
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		6e-11
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		6e-11
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		7e-11
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		7e-11
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		7e-11
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		7e-11
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		7e-11
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		7e-11
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		8e-11
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		8e-11
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		8e-11
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		8e-11
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		8e-11
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		8e-11
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		8e-11
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		9e-11
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		9e-11
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		9e-11
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		9e-11
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		9e-11
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		9e-11
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		9e-11
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		1e-10
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		1e-10
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		1e-10
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		1e-10
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		1e-10
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		1e-10
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		1e-10
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		1e-10
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		1e-10
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		1e-10
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		1e-10
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		1e-10
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		1e-10
2iwi_A	312	Crystal Structure Of The Human Pim2 In Complex With		1e-10
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-10
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-10
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		1e-10
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		1e-10
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		1e-10
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		1e-10
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		1e-10
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		1e-10
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-10
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		2e-10
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		2e-10
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		2e-10
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		2e-10
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-10
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		2e-10
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		2e-10
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		2e-10
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-10
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		2e-10
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		2e-10
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		2e-10
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		2e-10
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		3e-10
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		3e-10
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		3e-10
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		3e-10
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		3e-10
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		3e-10
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		3e-10
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-10
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		4e-10
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		4e-10
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		4e-10
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		4e-10
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		4e-10
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		4e-10
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		4e-10
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		4e-10
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		4e-10
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		5e-10
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		5e-10
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		5e-10
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		5e-10
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		5e-10
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		5e-10
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		6e-10
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		6e-10
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		6e-10
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		6e-10
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		6e-10
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		6e-10
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		6e-10
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		6e-10
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		6e-10
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		7e-10
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		7e-10
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		7e-10
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		7e-10
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		7e-10
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		7e-10
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		7e-10
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		7e-10
1fvr_A	327	Tie2 Kinase Domain Length = 327		7e-10
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		8e-10
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		8e-10
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		8e-10
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		8e-10
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		8e-10
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		8e-10
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		8e-10
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		8e-10
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		8e-10
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		8e-10
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		8e-10
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		8e-10
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		9e-10
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		9e-10
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		9e-10
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		9e-10
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		9e-10
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		9e-10
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		9e-10
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-09
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		1e-09
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		1e-09
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		1e-09
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		1e-09
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		1e-09
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		1e-09
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		1e-09
2oza_B	366	Structure Of P38alpha Complex Length = 366		1e-09
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-09
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		1e-09
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		1e-09
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		1e-09
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		1e-09
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		1e-09
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		1e-09
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		1e-09
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		1e-09
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		1e-09
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-09
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		2e-09
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		2e-09
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		2e-09
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		2e-09
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		2e-09
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		2e-09
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		2e-09
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		2e-09
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		2e-09
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		2e-09
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		2e-09
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		2e-09
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		2e-09
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		2e-09
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		2e-09
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		2e-09
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		2e-09
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		2e-09
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		2e-09
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		2e-09
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-09
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		2e-09
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		2e-09
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		2e-09
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		2e-09
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		2e-09
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		2e-09
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		2e-09
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		2e-09
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		2e-09
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		2e-09
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		2e-09
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		2e-09
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		2e-09
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		2e-09
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		2e-09
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		2e-09
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		2e-09
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		2e-09
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-09
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		2e-09
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		2e-09
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		2e-09
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		2e-09
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-09
4ae6_A	343	Structure And Function Of The Human Sperm-specific		2e-09
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		2e-09
1yxs_A	293	Crystal Structure Of Kinase Pim1 With P123m Mutatio		2e-09
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		2e-09
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		2e-09
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-09
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		2e-09
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		2e-09
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		2e-09
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		2e-09
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		2e-09
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		2e-09
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		2e-09
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		2e-09
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		2e-09
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		2e-09
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		2e-09
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-09
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-09
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		2e-09
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-09
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		3e-09
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		3e-09
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		3e-09
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		3e-09
4ae9_A	343	Structure And Function Of The Human Sperm-specific		3e-09
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		3e-09
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		3e-09
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		3e-09
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		3e-09
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		3e-09
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		3e-09
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		3e-09
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		3e-09
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		3e-09
4g3f_A	336	Crystal Structure Of Murine Nf-kappab Inducing Kina		3e-09
4g3c_A	352	Crystal Structure Of Apo Murine Nf-kappab Inducing		3e-09
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		3e-09
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		4e-09
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-09
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		4e-09
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		4e-09
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		4e-09
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		4e-09
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		4e-09
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		4e-09
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		4e-09
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		4e-09
4exu_A	371	Mapk13, Inactive Form Length = 371		4e-09
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		4e-09
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		4e-09
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		5e-09
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		5e-09
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		5e-09
4dn5_A	356	Crystal Structure Of Nf-kb-inducing Kinase (nik) Le		5e-09
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		5e-09
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		5e-09
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		5e-09
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		5e-09
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		5e-09
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		5e-09
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		5e-09
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		5e-09
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		6e-09
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		6e-09
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		6e-09
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		6e-09
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		6e-09
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		7e-09
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		7e-09
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		7e-09
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		7e-09
4g3g_A	350	Crystal Structure Of Murine Nf-kappab Inducing Kina		7e-09
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		7e-09
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		7e-09
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		8e-09
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		8e-09
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		8e-09
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		8e-09
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		8e-09
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		8e-09
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		9e-09
4fl3_A	635	Structural And Biophysical Characterization Of The		9e-09
2rio_A	434	Structure Of The Dual Enzyme Ire1 Reveals The Basis		9e-09
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		9e-09
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		9e-09
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		9e-09
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		9e-09
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		9e-09
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		9e-09
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		9e-09
4fl2_A	636	Structural And Biophysical Characterization Of The		9e-09
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		1e-08
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		1e-08
3dcv_A	328	Crystal Structure Of Human Pim1 Kinase Complexed Wi		1e-08
1xws_A	313	Crystal Structure Of The Human Pim1 Kinase Domain L		1e-08
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		1e-08
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-08
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		1e-08
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		1e-08
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		1e-08
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		1e-08
3jpv_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-08
2j2i_B	312	Crystal Structure Of The Humab Pim1 In Complex With		1e-08
3uix_A	298	Crystal Structure Of Pim1 Kinase In Complex With Sm		1e-08
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		1e-08
3cxw_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-08
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		1e-08
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		1e-08
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		1e-08
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		1e-08
3ma3_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-08
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		1e-08
2bil_B	313	The Human Protein Kinase Pim1 In Complex With Its C		1e-08
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		1e-08
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		1e-08
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		1e-08
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		1e-08
4alv_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		1e-08
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		1e-08
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		1e-08
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-08
4a7c_A	308	Crystal Structure Of Pim1 Kinase With Etp46546 Leng		1e-08
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		1e-08
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		1e-08
3cy3_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-08
3soa_A	444	Full-Length Human Camkii Length = 444		1e-08
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-08
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		1e-08
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		1e-08
3a99_A	320	Structure Of Pim-1 Kinase Crystallized In The Prese		1e-08
2obj_A	333	Crystal Structure Of Human Pim-1 Kinase In Complex		1e-08
1ywv_A	293	Crystal Structures Of Proto-Oncogene Kinase Pim1: A		1e-08
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		1e-08
3kk8_A	284	Camkii Substrate Complex A Length = 284		1e-08
1xqz_A	300	Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolut		1e-08
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		1e-08
3jxw_A	294	Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-		1e-08
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		1e-08
3r00_A	299	The Discovery Of Novel Benzofuran-2-Carboxylic Acid		1e-08
2xiy_A	301	Protein Kinase Pim-1 In Complex With Fragment-2 Fro		1e-08
2bik_B	313	Human Pim1 Phosphorylated On Ser261 Length = 313		1e-08
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		1e-08
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-08
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		1e-08
3kk9_A	282	Camkii Substrate Complex B Length = 282		1e-08
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		1e-08
2xj0_A	301	Protein Kinase Pim-1 In Complex With Fragment-4 Fro		1e-08
3f2a_A	300	Crystal Structure Of Human Pim-1 In Complex With Da		2e-08
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		2e-08
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		2e-08
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		2e-08
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		2e-08
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		2e-08
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		2e-08
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		2e-08
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		2e-08
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		2e-08
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		2e-08
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		2e-08
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		2e-08
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-08
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		2e-08
4g3d_A	371	Crystal Structure Of Human Nf-kappab Inducing Kinas		2e-08
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		2e-08
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		2e-08
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		2e-08
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		2e-08
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		2e-08
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		2e-08
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		2e-08
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		2e-08
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-08
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		2e-08
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		2e-08
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		2e-08
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		2e-08
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		2e-08
2xix_A	301	Protein Kinase Pim-1 In Complex With Fragment-1 Fro		2e-08
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		2e-08
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		2e-08
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		2e-08
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-08
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		3e-08
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		3e-08
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		3e-08
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		3e-08
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-08
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		3e-08
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		3e-08
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		3e-08
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		3e-08
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		3e-08
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		3e-08
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		3e-08
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		3e-08
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-08
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		3e-08
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		3e-08
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		3e-08
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-08
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		3e-08
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		4e-08
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		4e-08
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		4e-08
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		4e-08
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		4e-08
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		4e-08
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		4e-08
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		4e-08
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-08
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-05
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		4e-08
3b2t_A	311	Structure Of Phosphotransferase Length = 311		4e-08
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-08
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		5e-08
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		5e-08
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-08
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		5e-08
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		5e-08
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		5e-08
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		5e-08
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		5e-08
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		6e-08
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		6e-08
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		6e-08
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		6e-08
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		6e-08
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		6e-08
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-08
3sdj_A	448	Structure Of Rnase-Inactive Point Mutant Of Oligome		7e-08
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		7e-08
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		7e-08
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		7e-08
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		7e-08
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		7e-08
3fbv_A	448	Crystal Structure Of The Oligomer Formed By The Kin		7e-08
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		8e-08
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		8e-08
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		9e-08
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		9e-08
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		9e-08
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		9e-08
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		9e-08
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		1e-07
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		1e-07
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		1e-07
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		1e-07
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		1e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-05
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		1e-07
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		1e-07
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		1e-07
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		1e-07
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		1e-07
4alu_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		1e-07
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		1e-07
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		1e-07
4dtk_A	276	Novel And Selective Pan-Pim Kinase Inhibitor Length		1e-07
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		1e-07
3lj0_A	434	Ire1 Complexed With Adp And Quercetin Length = 434		1e-07
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		1e-07
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		1e-07
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		2e-07
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-07
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		2e-07
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		2e-07
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		2e-07
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		2e-07
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		2e-07
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		2e-07
4as0_A	273	Cyclometalated Phthalimides As Protein Kinase Inhib		2e-07
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-07
1yhs_A	273	Crystal Structure Of Pim-1 Bound To Staurosporine L		2e-07
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		2e-07
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		2e-07
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		2e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
3c4e_A	273	Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7		2e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-04
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		2e-07
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		2e-07
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-07
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		2e-07
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-07
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		2e-07
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		2e-07
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		2e-07
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		2e-07
2oza_A	356	Structure Of P38alpha Complex Length = 356		2e-07
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		2e-07
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		2e-07
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		2e-07
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		2e-07
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		2e-07
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		3e-07
2buj_A	317	Crystal Structure Of The Human Serine-Threonine Kin		3e-07
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		3e-07
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-07
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		3e-07
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		3e-07
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		4e-07
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		4e-07
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		4e-07
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		4e-07
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		4e-07
3kmu_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		5e-07
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		5e-07
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		5e-07
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		5e-07
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		5e-07
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		6e-07
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		6e-07
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		5e-04
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		6e-07
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		6e-07
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		4e-04
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		6e-07
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		6e-07
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		7e-07
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		7e-07
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		7e-07
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		7e-07
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		7e-07
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		8e-07
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		9e-07
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		9e-07
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		9e-07
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		9e-07
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		9e-07
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		9e-07
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		9e-07
4euu_A	319	Structure Of Bx-795 Complexed With Human Tbk1 Kinas		9e-07
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		9e-07
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		9e-07
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		1e-06
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		1e-06
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		1e-06
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		1e-06
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		1e-06
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		1e-06
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		1e-06
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-06
3p23_A	432	Crystal Structure Of The Human Kinase And Rnase Dom		1e-06
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		1e-06
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		1e-06
4eut_A	396	Structure Of Bx-795 Complexed With Unphosphorylated		1e-06
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		1e-06
2h34_A	309	Apoenzyme Crystal Structure Of The Tuberculosis Ser		1e-06
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		1e-06
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-06
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		2e-06
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		2e-06
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		2e-06
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		2e-06
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		2e-06
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		2e-06
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		2e-06
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		2e-06
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		2e-06
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		3e-06
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		3e-06
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		3e-06
3rgf_A	405	Crystal Structure Of Human Cdk8CYCC Length = 405		3e-06
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		3e-06
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		3e-06
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		3e-06
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		3e-06
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		3e-06
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		3e-06
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		3e-06
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		5e-06

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/283 (38%), Positives = 169/283 (59%), Gaps = 17/283 (6%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           KN +G+GG G VYK  L  G +VAVK+L  +RT+       +LQ     +TEVE +    
Sbjct: 35  KNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQ-----GGELQF----QTEVEMISMAV 85
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLA 647
           H+N+++L  +  +    LLVY YM NG++   L +       LDWP R +IA G A+GLA
Sbjct: 86  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 145
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH      IIHRD+K+ NILLD  ++  V DFG+AK++  +         + G  G++A
Sbjct: 146 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYK--DXHVXXAVRGXIGHIA 203
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVE-DDFGDNKNIIYWVSIKVDTKEGIMEV 766
           PEY  + K++ K DV+ +GV+L+ELITG++  +     ++ +++    +K   KE  +E 
Sbjct: 204 PEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEA 263
Query: 767 L-DKKLSGSFRDEMI-QVLRIAIRCTSKSPATRPTMNEVVQLL 807
           L D  L G+++DE + Q++++A+ CT  SP  RP M+EVV++L
Sbjct: 264 LVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  187 bits (474), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/283 (38%), Positives = 169/283 (59%), Gaps = 17/283 (6%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           KN +G+GG G VYK  L  G +VAVK+L  +R +       +LQ     +TEVE +    
Sbjct: 43  KNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGG-----ELQF----QTEVEMISMAV 93
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLA 647
           H+N+++L  +  +    LLVY YM NG++   L +       LDWP R +IA G A+GLA
Sbjct: 94  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 153
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH      IIHRD+K+ NILLD  ++  V DFG+AK++  +         + GT G++A
Sbjct: 154 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYK--DXHVXXAVRGTIGHIA 211
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVE-DDFGDNKNIIYWVSIKVDTKEGIMEV 766
           PEY  + K++ K DV+ +GV+L+ELITG++  +     ++ +++    +K   KE  +E 
Sbjct: 212 PEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEA 271
Query: 767 L-DKKLSGSFRDEMI-QVLRIAIRCTSKSPATRPTMNEVVQLL 807
           L D  L G+++DE + Q++++A+ CT  SP  RP M+EVV++L
Sbjct: 272 LVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 314

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  156 bits (395), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 207/437 (47%), Gaps = 49/437 (11%)
Query: 16  MQNLRRLDLSNNLFTGQFPLSVFNLT-NLEVLSFNENPGFKLWKLPESSIFRLTKLRIMV 74
           M+ L+ LDLS N F+G+ P S+ NL+ +L  L  + N  F    LP         L+ + 
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELY 397
Query: 75  LATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP 134
           L      G+IP ++ N + L  L L+ N+++G IP  +G L  LR L+L+ N  L G IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIP 456
Query: 135 EELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTML 194
           +EL  +  L  L +  N L+G+IP  +     L  + L NN L+GEI   I     L +L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYFLVLQNMFSGVL 253
            L +NS +G +P +LG    L+ LDL+ N  +G +PA +  + GK+    +    +  + 
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 254 PDSLAR----CKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR 309
            D + +      NLL F       +G   E +  L   +  +++   + G  + T  N  
Sbjct: 577 NDGMKKECHGAGNLLEF-------QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQXXXX 369
           ++  L M  N +SG+IP EI     L  ++L  N +SG IP  +G+L+ LN+L L     
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS---- 685
Query: 370 XXXXXXXXXXXXXXXXXXXXXXXXTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKEG 428
                                    G IP+++  L +   I+ SNN LSGPIP    + G
Sbjct: 686 --------------------SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP----EMG 721
Query: 429 LVESFS-----GNPGLC 440
             E+F       NPGLC
Sbjct: 722 QFETFPPAKFLNNPGLC 738

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 207/437 (47%), Gaps = 49/437 (11%)
Query: 16  MQNLRRLDLSNNLFTGQFPLSVFNLT-NLEVLSFNENPGFKLWKLPESSIFRLTKLRIMV 74
           M+ L+ LDLS N F+G+ P S+ NL+ +L  L  + N  F    LP         L+ + 
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELY 400
Query: 75  LATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP 134
           L      G+IP ++ N + L  L L+ N+++G IP  +G L  LR L+L+ N  L G IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIP 459
Query: 135 EELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTML 194
           +EL  +  L  L +  N L+G+IP  +     L  + L NN L+GEI   I     L +L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYFLVLQNMFSGVL 253
            L +NS +G +P +LG    L+ LDL+ N  +G +PA +  + GK+    +    +  + 
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 254 PDSLAR----CKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR 309
            D + +      NLL F       +G   E +  L   +  +++   + G  + T  N  
Sbjct: 580 NDGMKKECHGAGNLLEF-------QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQXXXX 369
           ++  L M  N +SG+IP EI     L  ++L  N +SG IP  +G+L+ LN+L L     
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS---- 688
Query: 370 XXXXXXXXXXXXXXXXXXXXXXXXTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKEG 428
                                    G IP+++  L +   I+ SNN LSGPIP    + G
Sbjct: 689 --------------------SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP----EMG 724
Query: 429 LVESFS-----GNPGLC 440
             E+F       NPGLC
Sbjct: 725 QFETFPPAKFLNNPGLC 741

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/315 (35%), Positives = 170/315 (53%), Gaps = 19/315 (6%)
Query: 497 EPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVK 556
           E  +T   SF  Y++K+    +FD+R I       NK+G+GG G VYK  +N+   VAVK
Sbjct: 6   EVSDTRFHSFSFYELKNVTN-NFDERPI---SVGGNKMGEGGFGVVYKGYVNN-TTVAVK 60
Query: 557 KLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPN 616
           KL       +  D    +L +    E++ +   +H+N+V+L  + S      LVY YMPN
Sbjct: 61  KL------AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPN 114
Query: 617 GNLWDALH--KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ 674
           G+L D L    G   L W  R KIA G A G+ +LH    +  IHRDIKS NILLD  + 
Sbjct: 115 GSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFT 171
Query: 675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
            K++DFG+A+  + +  +    + I GT  Y+APE A   + T K D+YSFGVVL+E+IT
Sbjct: 172 AKISDFGLARASE-KFAQTVMXSRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIIT 229
Query: 735 GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSP 794
           G  P  D+  + + ++       D ++ I + +DKK++ +    +  +  +A +C  +  
Sbjct: 230 GL-PAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKK 288
Query: 795 ATRPTMNEVVQLLAE 809
             RP + +V QLL E
Sbjct: 289 NKRPDIKKVQQLLQE 303

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/315 (35%), Positives = 169/315 (53%), Gaps = 19/315 (6%)
Query: 497 EPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVK 556
           E  +T   SF  Y++K+    +FD+R I       NK+G+GG G VYK  +N+   VAVK
Sbjct: 6   EVSDTRFHSFSFYELKNVTN-NFDERPI---SVGGNKMGEGGFGVVYKGYVNN-TTVAVK 60
Query: 557 KLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPN 616
           KL       +  D    +L +    E++ +   +H+N+V+L  + S      LVY YMPN
Sbjct: 61  KL------AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPN 114
Query: 617 GNLWDALH--KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ 674
           G+L D L    G   L W  R KIA G A G+ +LH    +  IHRDIKS NILLD  + 
Sbjct: 115 GSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFT 171
Query: 675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
            K++DFG+A+  + +  +      I GT  Y+APE A   + T K D+YSFGVVL+E+IT
Sbjct: 172 AKISDFGLARASE-KFAQTVMXXRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIIT 229
Query: 735 GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSP 794
           G  P  D+  + + ++       D ++ I + +DKK++ +    +  +  +A +C  +  
Sbjct: 230 GL-PAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKK 288
Query: 795 ATRPTMNEVVQLLAE 809
             RP + +V QLL E
Sbjct: 289 NKRPDIKKVQQLLQE 303

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score =  149 bits (377), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 168/312 (53%), Gaps = 19/312 (6%)
Query: 500 ETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLW 559
           +T   SF  Y++K+    +FD+R I       NK+G+GG G VYK  +N+   VAVKKL 
Sbjct: 3   DTRFHSFSFYELKNVTN-NFDERPI---SVGGNKMGEGGFGVVYKGYVNN-TTVAVKKL- 56
Query: 560 SQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNL 619
                 +  D    +L +    E++ +   +H+N+V+L  + S      LVY YMPNG+L
Sbjct: 57  -----AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 111
Query: 620 WDALH--KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV 677
            D L    G   L W  R KIA G A G+ +LH    +  IHRDIKS NILLD  +  K+
Sbjct: 112 LDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFTAKI 168
Query: 678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRK 737
           +DFG+A+  + +  +      I GT  Y+APE A   + T K D+YSFGVVL+E+ITG  
Sbjct: 169 SDFGLARASE-KFAQXVMXXRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGL- 225
Query: 738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR 797
           P  D+  + + ++       D ++ I + +DKK++ +    +  +  +A +C  +    R
Sbjct: 226 PAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKR 285
Query: 798 PTMNEVVQLLAE 809
           P + +V QLL E
Sbjct: 286 PDIKKVQQLLQE 297

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 19/307 (6%)
Query: 505 SFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTK 564
           SF  Y++K+    +FD+R I       NK G+GG G VYK  +N+   VAVKKL      
Sbjct: 5   SFSFYELKNVTN-NFDERPI---SVGGNKXGEGGFGVVYKGYVNN-TTVAVKKL------ 53
Query: 565 VSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH 624
            +  D    +L +    E++     +H+N+V+L  + S      LVY Y PNG+L D L 
Sbjct: 54  AAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLS 113
Query: 625 --KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
              G   L W  R KIA G A G+ +LH    +  IHRDIKS NILLD  +  K++DFG+
Sbjct: 114 CLDGTPPLSWHXRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFTAKISDFGL 170
Query: 683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           A+  + +  +    + I GT  Y APE A   + T K D+YSFGVVL+E+ITG  P  D+
Sbjct: 171 ARASE-KFAQXVXXSRIVGTTAYXAPE-ALRGEITPKSDIYSFGVVLLEIITGL-PAVDE 227
Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
             + + ++       D ++ I + +DKK + +    +     +A +C  +    RP + +
Sbjct: 228 HREPQLLLDIKEEIEDEEKTIEDYIDKKXNDADSTSVEAXYSVASQCLHEKKNKRPDIKK 287
Query: 803 VVQLLAE 809
           V QLL E
Sbjct: 288 VQQLLQE 294

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 164/324 (50%), Gaps = 23/324 (7%)
Query: 493 RAITEPDETLSSSFF-PYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGE 551
           +A    ++ LSSS+  P++  S+     D  E       K  +G G  G VYK  L  G 
Sbjct: 7   KATNSINDALSSSYLVPFE--SYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGA 64
Query: 552 VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVY 611
            VA+K+    RT  S+      Q  +  +TE+ETL   RH ++V L  +       +L+Y
Sbjct: 65  KVALKR----RTPESS------QGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIY 114
Query: 612 EYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNIL 668
           +YM NGNL   L+      + + W  R +I  G A+GL YLH      IIHRD+KS NIL
Sbjct: 115 KYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINIL 171
Query: 669 LDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVV 728
           LD N+ PK+ DFGI+K      G+     V+ GT GY+ PEY    + T K DVYSFGVV
Sbjct: 172 LDENFVPKITDFGISKK-GTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVV 230
Query: 729 LMELITGRKPVEDDF-GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVL-RIA 786
           L E++  R  +      +  N+  W +++      + +++D  L+   R E ++     A
Sbjct: 231 LFEVLCARSAIVQSLPREMVNLAEW-AVESHNNGQLEQIVDPNLADKIRPESLRKFGDTA 289
Query: 787 IRCTSKSPATRPTMNEVVQLLAEA 810
           ++C + S   RP+M +V+  L  A
Sbjct: 290 VKCLALSSEDRPSMGDVLWKLEYA 313

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/327 (33%), Positives = 166/327 (50%), Gaps = 29/327 (8%)
Query: 493 RAITEPDETLSSSFF-PYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGE 551
           +A    ++ LSSS+  P++  S+     D  E       K  +G G  G VYK  L  G 
Sbjct: 7   KATNSINDALSSSYLVPFE--SYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGA 64
Query: 552 VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVY 611
            VA+K+    RT  S+      Q  +  +TE+ETL   RH ++V L  +       +L+Y
Sbjct: 65  KVALKR----RTPESS------QGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIY 114
Query: 612 EYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNIL 668
           +YM NGNL   L+      + + W  R +I  G A+GL YLH      IIHRD+KS NIL
Sbjct: 115 KYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINIL 171
Query: 669 LDVNYQPKVADFGIAKVLQARGGKDSTT---TVIAGTYGYLAPEYAYSSKATTKCDVYSF 725
           LD N+ PK+ DFGI+K    +G +   T    V+ GT GY+ PEY    + T K DVYSF
Sbjct: 172 LDENFVPKITDFGISK----KGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSF 227
Query: 726 GVVLMELITGRKPVEDDF-GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVL- 783
           GVVL E++  R  +      +  N+  W +++      + +++D  L+   R E ++   
Sbjct: 228 GVVLFEVLCARSAIVQSLPREMVNLAEW-AVESHNNGQLEQIVDPNLADKIRPESLRKFG 286
Query: 784 RIAIRCTSKSPATRPTMNEVVQLLAEA 810
             A++C + S   RP+M +V+  L  A
Sbjct: 287 DTAVKCLALSSEDRPSMGDVLWKLEYA 313

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 145/298 (48%), Gaps = 43/298 (14%)
Query: 513 SFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQ 572
           S H I + + E+ E       VG+G  G V K    + +V A+K++ S+  +        
Sbjct: 2   SLHMIDYKEIEVEEV------VGRGAFGVVCKAKWRAKDV-AIKQIESESER-------- 46
Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
               K    E+  L  + H NIVKLY    +  C  LV EY   G+L++ LH       +
Sbjct: 47  ----KAFIVELRQLSRVNHPNIVKLYGACLNPVC--LVMEYAEGGSLYNVLHGAEPLPYY 100
Query: 633 PTRHKIAFGV--AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQAR 689
              H +++ +  +QG+AYLH      +IHRD+K  N+LL       K+ DFG A  +Q  
Sbjct: 101 TAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQ-- 158
Query: 690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI 749
               +  T   G+  ++APE    S  + KCDV+S+G++L E+IT RKP  D+ G     
Sbjct: 159 ----THMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPF-DEIGGPAFR 213
Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           I W ++   T+  +++ L K +             +  RC SK P+ RP+M E+V+++
Sbjct: 214 IMW-AVHNGTRPPLIKNLPKPIES-----------LMTRCWSKDPSQRPSMEEIVKIM 259

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 145/298 (48%), Gaps = 43/298 (14%)
Query: 513 SFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQ 572
           S H I + + E+ E       VG+G  G V K    + +V A+K++ S+  +        
Sbjct: 1   SLHMIDYKEIEVEEV------VGRGAFGVVCKAKWRAKDV-AIKQIESESER-------- 45
Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
               K    E+  L  + H NIVKLY    +  C  LV EY   G+L++ LH       +
Sbjct: 46  ----KAFIVELRQLSRVNHPNIVKLYGACLNPVC--LVMEYAEGGSLYNVLHGAEPLPYY 99
Query: 633 PTRHKIAFGV--AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQAR 689
              H +++ +  +QG+AYLH      +IHRD+K  N+LL       K+ DFG A  +Q  
Sbjct: 100 TAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQ-- 157
Query: 690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI 749
               +  T   G+  ++APE    S  + KCDV+S+G++L E+IT RKP  D+ G     
Sbjct: 158 ----THMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPF-DEIGGPAFR 212
Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           I W ++   T+  +++ L K +             +  RC SK P+ RP+M E+V+++
Sbjct: 213 IMW-AVHNGTRPPLIKNLPKPIES-----------LMTRCWSKDPSQRPSMEEIVKIM 258

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 147/298 (49%), Gaps = 34/298 (11%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K K+G G  GTV++ + + G  VAVK L  Q       D    ++++ L+ EV  +  +R
Sbjct: 42  KEKIGAGSFGTVHRAEWH-GSDVAVKILMEQ-------DFHAERVNEFLR-EVAIMKRLR 92
Query: 591 HKNIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALHK--GLVHLDWPTRHKIAFGVAQGLA 647
           H NIV L+    +   NL +V EY+  G+L+  LHK      LD   R  +A+ VA+G+ 
Sbjct: 93  HPNIV-LFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMN 151
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH+    PI+HRD+KS N+L+D  Y  KV DFG++++   +      +   AGT  ++A
Sbjct: 152 YLHNRN-PPIVHRDLKSPNLLVDKKYTVKVCDFGLSRL---KASXFLXSKXAAGTPEWMA 207
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           PE      +  K DVYSFGV+L EL T ++P             W ++        +   
Sbjct: 208 PEVLRDEPSNEKSDVYSFGVILWELATLQQP-------------WGNLNPAQVVAAVGFK 254
Query: 768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSN 825
            K+L    R+   QV  I   C +  P  RP+   ++ LL    P    +   PN+S+
Sbjct: 255 CKRLEIP-RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLR---PLIKSAVPPPNRSD 308

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score =  109 bits (273), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 148/298 (49%), Gaps = 34/298 (11%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K K+G G  GTV++ + + G  VAVK L  Q       D    ++++ L+ EV  +  +R
Sbjct: 42  KEKIGAGSFGTVHRAEWH-GSDVAVKILMEQ-------DFHAERVNEFLR-EVAIMKRLR 92
Query: 591 HKNIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALHK--GLVHLDWPTRHKIAFGVAQGLA 647
           H NIV L+    +   NL +V EY+  G+L+  LHK      LD   R  +A+ VA+G+ 
Sbjct: 93  HPNIV-LFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMN 151
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH+    PI+HR++KS N+L+D  Y  KV DFG++++   +     ++   AGT  ++A
Sbjct: 152 YLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL---KASTFLSSKSAAGTPEWMA 207
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           PE      +  K DVYSFGV+L EL T ++P             W ++        +   
Sbjct: 208 PEVLRDEPSNEKSDVYSFGVILWELATLQQP-------------WGNLNPAQVVAAVGFK 254
Query: 768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSN 825
            K+L    R+   QV  I   C +  P  RP+   ++ LL    P    +   PN+S+
Sbjct: 255 CKRLEIP-RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLR---PLIKSAVPPPNRSD 308

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 142/306 (46%), Gaps = 45/306 (14%)
Query: 516 RISFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           R S D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ
Sbjct: 1   RDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ 53
Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
                K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +   
Sbjct: 54  ---AFKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKK 109
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
              IA   A+G+ YLH      IIHRD+KS NI L  +   K+ DFG+A V ++R     
Sbjct: 110 LIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATV-KSRWSGSH 165
Query: 695 TTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
               ++G+  ++APE      S+  + + DVY+FG+VL EL+TG+ P  +          
Sbjct: 166 QFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN---------- 215
Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVL--------RIAIRCTSKSPATRPTMNEV 803
                ++ ++ I+E++ +   GS   ++ +V         R+   C  K    RP+   +
Sbjct: 216 -----INNRDQIIEMVGR---GSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRI 267
Query: 804 VQLLAE 809
           +  + E
Sbjct: 268 LAEIEE 273

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 34/288 (11%)
Query: 531 KNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           + ++G+GG G V+K  L     VVA+K L       S  +T+ ++  +  + EV  + N+
Sbjct: 24  EKQIGKGGFGLVHKGRLVKDKSVVAIKSLI---LGDSEGETEMIEKFQEFQREVFIMSNL 80
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
            H NIVKLY    +     +V E++P G+L+  L      + W  + ++   +A G+ Y+
Sbjct: 81  NHPNIVKLYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYM 138
Query: 650 HHGLLSPIIHRDIKSTNIL---LDVNYQ--PKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            +    PI+HRD++S NI    LD N     KVADFG+++          + + + G + 
Sbjct: 139 QNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ------QSVHSVSGLLGNFQ 191
Query: 705 YLAPEY--AYSSKATTKCDVYSFGVVLMELITGRKPVED-DFGDNKNIIYWVSIKVDTKE 761
           ++APE   A     T K D YSF ++L  ++TG  P ++  +G  K       I +  +E
Sbjct: 192 WMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIK------FINMIREE 245
Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           G+   + +      R+ +I++      C S  P  RP  + +V+ L+E
Sbjct: 246 GLRPTIPEDCPPRLRN-VIEL------CWSGDPKKRPHFSYIVKELSE 286

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 140/288 (48%), Gaps = 34/288 (11%)
Query: 531 KNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           + ++G+GG G V+K  L     VVA+K L       S  +T+ ++  +  + EV  + N+
Sbjct: 24  EKQIGKGGFGLVHKGRLVKDKSVVAIKSLI---LGDSEGETEMIEKFQEFQREVFIMSNL 80
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
            H NIVKLY    +     +V E++P G+L+  L      + W  + ++   +A G+ Y+
Sbjct: 81  NHPNIVKLYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYM 138
Query: 650 HHGLLSPIIHRDIKSTNIL---LDVNYQ--PKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            +    PI+HRD++S NI    LD N     KVADFG ++          + + + G + 
Sbjct: 139 QNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQ------QSVHSVSGLLGNFQ 191
Query: 705 YLAPEY--AYSSKATTKCDVYSFGVVLMELITGRKPVED-DFGDNKNIIYWVSIKVDTKE 761
           ++APE   A     T K D YSF ++L  ++TG  P ++  +G  K       I +  +E
Sbjct: 192 WMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIK------FINMIREE 245
Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           G+   + +      R+ +I++      C S  P  RP  + +V+ L+E
Sbjct: 246 GLRPTIPEDCPPRLRN-VIEL------CWSGDPKKRPHFSYIVKELSE 286

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 141/306 (46%), Gaps = 45/306 (14%)
Query: 516 RISFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           R S D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ
Sbjct: 13  RDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ 65
Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
                K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +   
Sbjct: 66  ---AFKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKK 121
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
              IA   A+G+ YLH      IIHRD+KS NI L  +   K+ DFG+A   ++R     
Sbjct: 122 LIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLA-TEKSRWSGSH 177
Query: 695 TTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
               ++G+  ++APE      S+  + + DVY+FG+VL EL+TG+ P  +          
Sbjct: 178 QFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN---------- 227
Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVL--------RIAIRCTSKSPATRPTMNEV 803
                ++ ++ I+E++ +   GS   ++ +V         R+   C  K    RP+   +
Sbjct: 228 -----INNRDQIIEMVGR---GSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRI 279
Query: 804 VQLLAE 809
           +  + E
Sbjct: 280 LAEIEE 285

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 140/288 (48%), Gaps = 34/288 (11%)
Query: 531 KNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           + ++G+GG G V+K  L     VVA+K L       S  +T+ ++  +  + EV  + N+
Sbjct: 24  EKQIGKGGFGLVHKGRLVKDKSVVAIKSLI---LGDSEGETEMIEKFQEFQREVFIMSNL 80
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
            H NIVKLY    +     +V E++P G+L+  L      + W  + ++   +A G+ Y+
Sbjct: 81  NHPNIVKLYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYM 138
Query: 650 HHGLLSPIIHRDIKSTNIL---LDVNYQ--PKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            +    PI+HRD++S NI    LD N     KVADF +++          + + + G + 
Sbjct: 139 QNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQ------QSVHSVSGLLGNFQ 191
Query: 705 YLAPEY--AYSSKATTKCDVYSFGVVLMELITGRKPVED-DFGDNKNIIYWVSIKVDTKE 761
           ++APE   A     T K D YSF ++L  ++TG  P ++  +G  K       I +  +E
Sbjct: 192 WMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIK------FINMIREE 245
Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           G+   + +      R+ +I++      C S  P  RP  + +V+ L+E
Sbjct: 246 GLRPTIPEDCPPRLRN-VIEL------CWSGDPKKRPHFSYIVKELSE 286

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 138/304 (45%), Gaps = 32/304 (10%)
Query: 516 RISFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           R S D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ
Sbjct: 25  RDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ 77
Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
                K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +   
Sbjct: 78  ---AFKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIK 133
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
              IA   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A V ++R     
Sbjct: 134 LIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV-KSRWSGSH 189
Query: 695 TTTVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
               ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+
Sbjct: 190 QFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIF 248
Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLA 808
            V             L   LS    +    + R+   C  K    RP   ++   ++LLA
Sbjct: 249 MVG---------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLA 299
Query: 809 EADP 812
            + P
Sbjct: 300 RSLP 303

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 141/306 (46%), Gaps = 45/306 (14%)
Query: 516 RISFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           R + D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ
Sbjct: 13  RDAADDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ 65
Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
                K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +   
Sbjct: 66  ---AFKNEVGVLRKTRHVNIL-LFMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKK 121
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
              IA   A+G+ YLH      IIHRD+KS NI L  +   K+ DFG+A   ++R     
Sbjct: 122 LIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLA-TEKSRWSGSH 177
Query: 695 TTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
               ++G+  ++APE      S+  + + DVY+FG+VL EL+TG+ P  +          
Sbjct: 178 QFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN---------- 227
Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVL--------RIAIRCTSKSPATRPTMNEV 803
                ++ ++ I+E++ +   GS   ++ +V         R+   C  K    RP+   +
Sbjct: 228 -----INNRDQIIEMVGR---GSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRI 279
Query: 804 VQLLAE 809
           +  + E
Sbjct: 280 LAEIEE 285

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 138/304 (45%), Gaps = 32/304 (10%)
Query: 516 RISFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           R S D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ
Sbjct: 24  RDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ 76
Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
                K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +   
Sbjct: 77  ---AFKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIK 132
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
              IA   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A V ++R     
Sbjct: 133 LIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV-KSRWSGSH 188
Query: 695 TTTVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
               ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+
Sbjct: 189 QFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIF 247
Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLA 808
            V             L   LS    +    + R+   C  K    RP   ++   ++LLA
Sbjct: 248 MVG---------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLA 298
Query: 809 EADP 812
            + P
Sbjct: 299 RSLP 302

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 21  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 73
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 74  NILRLYGYFHDATRVYLILEYAPRGEVYKELQK-LSKFDEQRTATYITELANALSYCHS- 131
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 132 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 184
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 185 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 227
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 228 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 282

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 132/299 (44%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 17  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 69
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 70  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 127
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T ++GT  YL PE   
Sbjct: 128 --KRVIHRDIKPENLLLGSAGELKIADFGWSC-----HAPSSRRTTLSGTLDYLPPEMIE 180
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 181 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 223
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 224 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNSQNKESAS 278

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 136/300 (45%), Gaps = 32/300 (10%)
Query: 520 DQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ    
Sbjct: 1   DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ---A 50
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
            K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +      I
Sbjct: 51  FKNEVGVLRKTRHVNIL-LFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDI 109
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A V ++R         
Sbjct: 110 ARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV-KSRWSGSHQFEQ 165
Query: 699 IAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI 755
           ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+ V  
Sbjct: 166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIFMVG- 223
Query: 756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLAEADP 812
                      L   LS    +    + R+   C  K    RP   ++   ++LLA + P
Sbjct: 224 --------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLP 275

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   + NS  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 16  LGKGKFGNVYLAREKNSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 69  NILRLYGYFHDSTRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 126
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S    + GT  YL PE   
Sbjct: 127 --KKVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRAALCGTLDYLPPEMIE 179
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   DT + I  V      
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQDTYKRISRV-----E 222
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 223 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           S D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ  
Sbjct: 4   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ-- 54
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
              K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +     
Sbjct: 55  -AFKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI 112
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
            IA   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A V ++R       
Sbjct: 113 DIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV-KSRWSGSHQF 168
Query: 697 TVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
             ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+ V
Sbjct: 169 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIFMV 227
Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLAEA 810
                        L   LS    +    + R+   C  K    RP   ++   ++LLA +
Sbjct: 228 G---------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS 278
Query: 811 DP 812
            P
Sbjct: 279 LP 280

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           S D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ  
Sbjct: 1   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ-- 51
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
              K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +     
Sbjct: 52  -AFKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI 109
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
            IA   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A V ++R       
Sbjct: 110 DIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV-KSRWSGSHQF 165
Query: 697 TVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
             ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+ V
Sbjct: 166 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIFMV 224
Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLAEA 810
                        L   LS    +    + R+   C  K    RP   ++   ++LLA +
Sbjct: 225 G---------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS 275
Query: 811 DP 812
            P
Sbjct: 276 LP 277

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           S D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ  
Sbjct: 4   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ-- 54
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
              K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +     
Sbjct: 55  -AFKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI 112
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
            IA   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A V ++R       
Sbjct: 113 DIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV-KSRWSGSHQF 168
Query: 697 TVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
             ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+ V
Sbjct: 169 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIFMV 227
Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLAEA 810
                        L   LS    +    + R+   C  K    RP   ++   ++LLA +
Sbjct: 228 G---------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS 278
Query: 811 DP 812
            P
Sbjct: 279 LP 280

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 136/300 (45%), Gaps = 32/300 (10%)
Query: 520 DQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ    
Sbjct: 1   DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ---A 50
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
            K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +      I
Sbjct: 51  FKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDI 109
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A V ++R         
Sbjct: 110 ARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV-KSRWSGSHQFEQ 165
Query: 699 IAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI 755
           ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+ V  
Sbjct: 166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIFMVG- 223
Query: 756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLAEADP 812
                      L   LS    +    + R+   C  K    RP   ++   ++LLA + P
Sbjct: 224 --------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLP 275

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 137/318 (43%), Gaps = 39/318 (12%)
Query: 515 HRISFDQREILEAMTEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
           H  S  ++  LE       +G+G  G VY   +  S  ++A+K L+        +  ++ 
Sbjct: 2   HXESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKA 54
Query: 574 QLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
            ++  L+ EVE   ++RH NI++LY YF       L+ EY P G ++  L K L   D  
Sbjct: 55  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQ 113
Query: 634 TRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD 693
                   +A  L+Y H      +IHRDIK  N+LL    + K+ADFG +          
Sbjct: 114 RTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPS 165
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
           S  T + GT  YL PE         K D++S GV+  E + G+ P E             
Sbjct: 166 SRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGKPPFE------------A 213
Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADP 812
           +   +T + I  V       +F D + +  R  I R    +P+ RP + EV+    E   
Sbjct: 214 NTYQETYKRISRV-----EFTFPDFVTEGARDLISRLLKHNPSQRPXLREVL----EHPW 264
Query: 813 CRFESCKFPNKSNKESSN 830
               S K  N  NKES++
Sbjct: 265 ITANSSKPSNCQNKESAS 282

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 144/335 (42%), Gaps = 46/335 (13%)
Query: 498 PDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVY-KIDLNSGEVVAVK 556
           P+E L+S       K  +  S  ++  LE       +G+G  G VY   +  S  ++A+K
Sbjct: 13  PEEELAS-------KQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK 65
Query: 557 KLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPN 616
            L+        +  ++  ++  L+ EVE   ++RH NI++LY YF       L+ EY P 
Sbjct: 66  VLFK-------AQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPL 118
Query: 617 GNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPK 676
           G ++  L K L   D          +A  L+Y H      +IHRDIK  N+LL    + K
Sbjct: 119 GTVYRELQK-LSKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELK 174
Query: 677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           +ADFG +          S  T + GT  YL PE         K D++S GV+  E + G+
Sbjct: 175 IADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 229
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI-RCTSKSPA 795
            P E             +   +T + I  V       +F D + +  R  I R    +P+
Sbjct: 230 PPFE------------ANTYQETYKRISRV-----EFTFPDFVTEGARDLISRLLKHNPS 272
Query: 796 TRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            RP + EV+    E       S K  N  NKES++
Sbjct: 273 QRPMLREVL----EHPWITANSSKPSNCQNKESAS 303

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 98/208 (47%), Gaps = 17/208 (8%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 20  LGKGKFGNVYLARERQSKFILALKVLFK-------TQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 73  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSRFDEQRTATYITELANALSYCHS- 130
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL  N + K+ADFG +          S  T + GT  YL PE   
Sbjct: 131 --KRVIHRDIKPENLLLGSNGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 183
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVE 740
                 K D++S GV+  E + G  P E
Sbjct: 184 GRMHDEKVDLWSLGVLCYEFLVGMPPFE 211

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 20  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 69
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 70  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 129
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 130 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 186
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 187 WYAPESLTESKFSVASDVWSFGVVLYELFT 216

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 126
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 127 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 179
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 222
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 223 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 277

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 131/301 (43%), Gaps = 39/301 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 126
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 127 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTDLCGTLDYLPPEMIE 179
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 222
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNA 831
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES+ A
Sbjct: 223 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAAA 278
Query: 832 T 832
Sbjct: 279 A 279

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 129
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 130 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 182
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 225
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 226 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 280

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 33  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 85
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 86  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 143
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 144 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 196
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 197 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 239
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 240 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 294

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 19  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 68
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 69  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 128
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 129 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 185
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 186 WYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 15  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 64
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 65  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 124
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 125 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 181
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 182 WYAPESLTESKFSVASDVWSFGVVLYELFT 211

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 47  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 96
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 97  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 156
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 157 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 213
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 214 WYAPESLTESKFSVASDVWSFGVVLYELFT 243

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 21  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 70
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 71  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 130
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 131 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 187
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 188 WYAPESLTESKFSVASDVWSFGVVLYELFT 217

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 16  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 65
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 125
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 126 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 182
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 183 WYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 21  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 73
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 74  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 131
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 132 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 184
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 185 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 227
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 228 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 282

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 22  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 71
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 72  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 131
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 132 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 188
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 189 WYAPESLTESKFSVASDVWSFGVVLYELFT 218

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 137/304 (45%), Gaps = 32/304 (10%)
Query: 516 RISFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           R S D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ
Sbjct: 17  RDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ 69
Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
                K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +   
Sbjct: 70  ---AFKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIK 125
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
              IA   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A   ++R     
Sbjct: 126 LIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLA-TEKSRWSGSH 181
Query: 695 TTTVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
               ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+
Sbjct: 182 QFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIF 240
Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLA 808
            V             L   LS    +    + R+   C  K    RP   ++   ++LLA
Sbjct: 241 MVG---------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLA 291
Query: 809 EADP 812
            + P
Sbjct: 292 RSLP 295

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 16  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 65
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 125
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 126 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 182
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 183 WYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 14  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 63
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 64  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 123
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 124 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 180
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 181 WYAPESLTESKFSVASDVWSFGVVLYELFT 210

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 34  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 83
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 84  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 143
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 144 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 200
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 201 WYAPESLTESKFSVASDVWSFGVVLYELFT 230

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 23  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 72
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 73  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 132
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 133 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 189
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 190 WYAPESLTESKFSVASDVWSFGVVLYELFT 219

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 26/221 (11%)
Query: 528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +T +  +G GG G VY+     G+ VAVK            D D  Q  + ++ E +   
Sbjct: 9   LTLEEIIGIGGFGKVYRA-FWIGDEVAVK------AARHDPDEDISQTIENVRQEAKLFA 61
Query: 588 NIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
            ++H NI+ L   C      C  LV E+   G L   L    +  D       A  +A+G
Sbjct: 62  MLKHPNIIALRGVCLKEPNLC--LVMEFARGGPLNRVLSGKRIPPD--ILVNWAVQIARG 117
Query: 646 LAYLHHGLLSPIIHRDIKSTNILL-------DV-NYQPKVADFGIAKVLQARGGKDSTTT 697
           + YLH   + PIIHRD+KS+NIL+       D+ N   K+ DFG+A     R    +T  
Sbjct: 118 MNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA-----REWHRTTKM 172
Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
             AG Y ++APE   +S  +   DV+S+GV+L EL+TG  P
Sbjct: 173 SAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 137/304 (45%), Gaps = 32/304 (10%)
Query: 516 RISFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           R S D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ
Sbjct: 25  RDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ 77
Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
                K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +   
Sbjct: 78  ---AFKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIK 133
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
              IA   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A   ++R     
Sbjct: 134 LIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLA-TEKSRWSGSH 189
Query: 695 TTTVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
               ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+
Sbjct: 190 QFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIF 248
Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLA 808
            V             L   LS    +    + R+   C  K    RP   ++   ++LLA
Sbjct: 249 MVG---------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLA 299
Query: 809 EADP 812
            + P
Sbjct: 300 RSLP 303

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 34  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 83
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 84  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 143
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 144 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 200
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 201 WYAPESLTESKFSVASDVWSFGVVLYELFT 230

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 126
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 127 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTELCGTLDYLPPEMIE 179
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 222
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 223 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 277

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 129
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 130 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 182
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 225
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 226 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 15  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 67
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 68  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 125
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 126 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 178
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 179 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 221
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 222 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 255

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 130/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 21  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 73
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 74  NILRLYGYFHDATRVYLILEYAPRGEVYKELQK-LSKFDEQRTATYITELANALSYCHS- 131
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S    + GT  YL PE   
Sbjct: 132 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRXXLXGTLDYLPPEMIE 184
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 185 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 227
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 228 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 282

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 20  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 73  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 130
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 131 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 183
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 184 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 226
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 227 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 260

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 126
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 127 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTXLCGTLDYLPPEMIE 179
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 222
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 223 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 17  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 69
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 70  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 127
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 128 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTDLCGTLDYLPPEMIE 180
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 181 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 223
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 224 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 278

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 21  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 73
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 74  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 131
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 132 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTDLCGTLDYLPPEMIE 184
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 185 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 227
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 228 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 282

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 135/292 (46%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 66
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  IRH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 67  MKKIRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 122
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 123 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 174
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 175 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 228
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 229 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 270

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 135/300 (45%), Gaps = 32/300 (10%)
Query: 520 DQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D  EI +  +T   ++G G  GTVYK   +    VAVK L      V+A    QLQ    
Sbjct: 1   DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQ---A 50
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
            K EV  L   RH NI+ L+  +S+     +V ++    +L+  LH      +      I
Sbjct: 51  FKNEVGVLRKTRHVNIL-LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDI 109
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A   ++R         
Sbjct: 110 ARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLA-TEKSRWSGSHQFEQ 165
Query: 699 IAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI 755
           ++G+  ++APE          + + DVY+FG+VL EL+TG+ P   +  +   II+ V  
Sbjct: 166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIFMVG- 223
Query: 756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLAEADP 812
                      L   LS    +    + R+   C  K    RP   ++   ++LLA + P
Sbjct: 224 --------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLP 275

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 20  LGKGKFGNVYLARERQSKFILALKVLFK-------TQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 73  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSRFDEQRTATYITELANALSYCHS- 130
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL  N + K+ADFG +  + A   +  T   + GT  YL PE   
Sbjct: 131 --KRVIHRDIKPENLLLGSNGELKIADFGWS--VHAPSSRRDT---LCGTLDYLPPEMIE 183
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVE 740
                 K D++S GV+  E + G  P E
Sbjct: 184 GRMHDEKVDLWSLGVLCYEFLVGMPPFE 211

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 126
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 127 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTDLCGTLDYLPPEMIE 179
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 222
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 223 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 130/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 129
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S    + GT  YL PE   
Sbjct: 130 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRAALCGTLDYLPPEMIE 182
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 225
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 226 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 280

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 133/299 (44%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 17  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 69
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 70  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 127
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +  + A   +  T   + GT  YL PE   
Sbjct: 128 --KRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRDT---LCGTLDYLPPEMIE 180
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 181 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 223
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 224 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 278

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 134/292 (45%), Gaps = 46/292 (15%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 66
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 67  MKKLRHEKLVQLYAVVSEEPIY---IVIEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 122
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 123 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEXTARQG 174
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 175 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 228
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT   +   L +
Sbjct: 229 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTFEYLQAFLED 271

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 19  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 68
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L      +D     +    + +
Sbjct: 69  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLLQYTSQICK 128
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 129 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF 185
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 186 WYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 16  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 65
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 125
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL                  
Sbjct: 126 GMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIF 182
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 183 WYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 131/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 18  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 70
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 71  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 128
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+A+FG +          S  T + GT  YL PE   
Sbjct: 129 --KRVIHRDIKPENLLLGSAGELKIANFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 181
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 182 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 224
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 225 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 279

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 121/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 126
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S    + GT  YL PE   
Sbjct: 127 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRAALCGTLDYLPPEMIE 179
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 222
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 223 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 135/292 (46%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 7   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 55
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 56  MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 112 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 163
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 164 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 217
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 218 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 259

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 135/292 (46%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 9   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 57
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 58  MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 113
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 114 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 165
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 166 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 219
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 220 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 261

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 135/292 (46%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 66
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 67  MKKLRHEKLVQLYAVVSEEPIY---IVIEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 122
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 123 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 174
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 175 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 228
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 229 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 270

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 130/299 (43%), Gaps = 39/299 (13%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 18  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 70
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 71  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 128
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S    + GT  YL PE   
Sbjct: 129 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRXXLCGTLDYLPPEMIE 181
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 182 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 224
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            +F D + +  R  I R    +P+ RP + EV+    E       S K  N  NKES++
Sbjct: 225 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVL----EHPWITANSSKPSNCQNKESAS 279

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 129
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+A+FG +          S  T + GT  YL PE   
Sbjct: 130 --KRVIHRDIKPENLLLGSAGELKIANFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 182
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 225
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 226 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +     ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 13  LGKGKFGNVYLAREKQRKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 66  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 123
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE   
Sbjct: 124 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRTTLCGTLDYLPPEMIE 176
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I      ++ 
Sbjct: 177 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRI-----SRVE 219
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 220 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 253

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 135/292 (46%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 66
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 67  MKKLRHEKLVQLYAVVSEEPIY---IVCEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 122
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 123 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 174
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 175 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 228
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 229 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 270

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 11  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 59
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG    +L  P    +A  
Sbjct: 60  MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQ 115
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 116 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 167
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 168 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 221
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 222 --ERGYRMPCPPECPESLHDLMCQ-------CWRKEPEERPTF-EYLQAFLE 263

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 135/292 (46%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 66
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 67  MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 122
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 123 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 174
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 175 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 228
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 229 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 270

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 145/335 (43%), Gaps = 46/335 (13%)
Query: 498 PDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVY-KIDLNSGEVVAVK 556
           P+E L+S       K  +  S  ++  LE       +G+G  G VY   +  S  ++A+K
Sbjct: 13  PEEELAS-------KQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK 65
Query: 557 KLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPN 616
            L+        +  ++  ++  L+ EVE   ++RH NI++LY YF       L+ EY P 
Sbjct: 66  VLFK-------AQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPL 118
Query: 617 GNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPK 676
           G ++  L K L   D          +A  L+Y H      +IHRDIK  N+LL    + K
Sbjct: 119 GTVYRELQK-LSKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELK 174
Query: 677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           +ADFG + V      +D     + GT  YL PE         K D++S GV+  E + G+
Sbjct: 175 IADFGWS-VHAPSSRRDD----LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 229
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI-RCTSKSPA 795
            P E             +   +T + I  V       +F D + +  R  I R    +P+
Sbjct: 230 PPFE------------ANTYQETYKRISRV-----EFTFPDFVTEGARDLISRLLKHNPS 272
Query: 796 TRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSN 830
            RP + EV+    E       S K  N  NKES++
Sbjct: 273 QRPMLREVL----EHPWITANSSKPSNCQNKESAS 303

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 20/209 (9%)
Query: 533 KVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L 
Sbjct: 20  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEILK 69
Query: 588 NIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           +++H NIVK    CY +      L+ E++P G+L + L K    +D     +    + +G
Sbjct: 70  SLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLLQYTSQICKG 129
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           + YL        IHRD+ + NIL++   + K+ DFG+ KVL                  +
Sbjct: 130 MEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFW 186
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT 734
            APE    SK +   DV+SFGVVL EL T
Sbjct: 187 YAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 66
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G L D L KG +  +L  P    +A  
Sbjct: 67  MKKLRHEKLVQLYAVVSEEPIY---IVMEYMSKGCLLDFL-KGEMGKYLRLPQLVDMAAQ 122
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 123 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 174
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 175 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 228
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 229 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 270

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 121/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 126
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S    + GT  YL PE   
Sbjct: 127 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRXXLCGTLDYLPPEMIE 179
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 222
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 223 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 121/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 129
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG +          S    + GT  YL PE   
Sbjct: 130 --KRVIHRDIKPENLLLGSAGELKIADFGWSV-----HAPSSRRXXLCGTLDYLPPEMIE 182
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 225
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 226 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 90/290 (31%), Positives = 132/290 (45%), Gaps = 43/290 (14%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 8   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 56
Query: 586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFGVA 643
           +  +RH+ +V+LY   S      +V EYM  G+L D L KG    +L  P    +A  +A
Sbjct: 57  MKKLRHEKLVQLYAVVSEEPI-XIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIA 114
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT- 702
            G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G  
Sbjct: 115 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEXTARQGAK 166
Query: 703 --YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT 759
               + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V      
Sbjct: 167 FPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV------ 218
Query: 760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 219 ERGYRMPCPPECPESLHDLMCQ-------CWRKEPEERPTF-EYLQAFLE 260

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 315
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG    +L  P    +A  
Sbjct: 316 MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQ 371
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 372 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 423
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 424 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 477
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 478 --ERGYRMPCPPECPESLHDLMCQ-------CWRKEPEERPTF-EYLQAFLE 519

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 232
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG    +L  P    +A  
Sbjct: 233 MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQ 288
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 289 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 340
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 341 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 394
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 395 --ERGYRMPCPPECPESLHDLMCQ-------CWRKEPEERPTF-EYLQAFLE 436

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 66
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G L D L KG +  +L  P    +A  
Sbjct: 67  MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGCLLDFL-KGEMGKYLRLPQLVDMAAQ 122
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 123 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 174
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 175 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 228
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 229 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 270

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 232
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG    +L  P    +A  
Sbjct: 233 MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQ 288
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 289 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 340
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 341 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 394
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 395 --ERGYRMPCPPECPESLHDLMCQ-------CWRKEPEERPTF-EYLQAFLE 436

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
            ++G+G  G+V       +  N+GEVVAVKKL         S  + L   +  + E+E L
Sbjct: 17  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-------QHSTEEHL---RDFEREIEIL 66
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            +++H NIVK    CY +      L+ EY+P G+L D L K    +D     +    + +
Sbjct: 67  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 126
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        IHR++ + NIL++   + K+ DFG+ KVL                  
Sbjct: 127 GMEYLG---TKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIF 183
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE    SK +   DV+SFGVVL EL T
Sbjct: 184 WYAPESLTESKFSVASDVWSFGVVLYELFT 213

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 123/274 (44%), Gaps = 35/274 (12%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  ++A+K L+        +  ++  ++  L+ EVE   ++RH 
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G ++  L K L   D          +A  L+Y H  
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHS- 129
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL    + K+ADFG + V      +D     + GT  YL PE   
Sbjct: 130 --KRVIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRDD----LCGTLDYLPPEMIE 182
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
                 K D++S GV+  E + G+ P E             +   +T + I  V      
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGKPPFE------------ANTYQETYKRISRV-----E 225
Query: 773 GSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
            +F D + +  R  I R    +P+ RP + EV++
Sbjct: 226 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 126/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VA+K L    T    S  ++ Q+ K LK          H
Sbjct: 15  KRLGNGQFGEVWMGTWNGNTKVAIKTL-KPGTMSPESFLEEAQIMKKLK----------H 63
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVAQGLAY 648
             +V+LY   S   +Y   +V EYM  G+L D L  G    L  P    +A  VA G+AY
Sbjct: 64  DKLVQLYAVVSEEPIY---IVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY 120
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD++S NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 121 IER---MNYIHRDLRSANILVGNGLICKIADFGLARLIE-----DNEXTARQGAKFPIKW 172
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE A   + T K DV+SFG++L EL+T GR P                  ++ +E + 
Sbjct: 173 TAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPG---------------MNNREVLE 217
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           +V         +D  I +  + I C  K P  RPT   +   L +
Sbjct: 218 QVERGYRMPCPQDCPISLHELMIHCWKKDPEERPTFEYLQSFLED 262

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 66
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 67  MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 122
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+ + NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 123 IASGMAYVER---MNYVHRDLAAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 174
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 175 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 228
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 229 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 270

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 232
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG    +L  P    +A  
Sbjct: 233 MKKLRHEKLVQLYAVVSEEPIY---IVGEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQ 288
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 289 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 340
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 341 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 394
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 395 --ERGYRMPCPPECPESLHDLMCQ-------CWRKEPEERPTF-EYLQAFLE 436

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 15  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 63
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG    +L  P    ++  
Sbjct: 64  MKKLRHEKLVQLYAVVSEEPIY---IVTEYMNKGSLLDFL-KGETGKYLRLPQLVDMSAQ 119
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 120 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEWTARQG 171
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 172 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 225
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 226 --ERGYRMPCPPECPESLHDLMCQ-------CWRKEPEERPTF-EYLQAFLE 267

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 15  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGTMSPEAFLQ-------EAQV 63
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG    +L  P    ++  
Sbjct: 64  MKKLRHEKLVQLYAVVSEEPIY---IVTEYMNKGSLLDFL-KGETGKYLRLPQLVDMSAQ 119
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++     D+  T   G
Sbjct: 120 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQG 171
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 172 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 225
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 226 --ERGYRMPCPPECPESLHDLMCQ-------CWRKEPEERPTF-EYLQAFLE 267

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+GQG  G V+    N    VA+K L       + S    LQ       E + 
Sbjct: 185 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL----KPGNMSPEAFLQ-------EAQV 233
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLV--HLDWPTRHKIAFG 641
           +  +RH+ +V+LY   S   +Y   +V EYM  G+L D L KG +  +L  P    +A  
Sbjct: 234 MKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQ 289
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+AY+        +HRD+++ NIL+  N   KVADFG+ ++++     D+  T   G
Sbjct: 290 IASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLGRLIE-----DNEYTARQG 341
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
                 + APE A   + T K DV+SFG++L EL T GR P       N+ ++  V    
Sbjct: 342 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQV---- 395
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             + G       +   S  D M Q       C  K P  RPT  E +Q   E
Sbjct: 396 --ERGYRMPCPPECPESLHDLMCQ-------CWRKDPEERPTF-EYLQAFLE 437

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 106/228 (46%), Gaps = 20/228 (8%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   +  S  +VA+K L+        S  ++  ++  L+ E+E   ++ H 
Sbjct: 31  LGKGKFGNVYLAREKKSHFIVALKVLFK-------SQIEKEGVEHQLRREIEIQAHLHHP 83
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI++LY YF       L+ EY P G L+  L K     D      I   +A  L Y H  
Sbjct: 84  NILRLYNYFYDRRRIYLILEYAPRGELYKELQKSCT-FDEQRTATIMEELADALMYCHG- 141
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRDIK  N+LL +  + K+ADFG +  + A   +  T   + GT  YL PE   
Sbjct: 142 --KKVIHRDIKPENLLLGLKGELKIADFGWS--VHAPSLRRKT---MCGTLDYLPPEMIE 194
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK 760
                 K D++  GV+  EL+ G  P E     + N  Y   +KVD K
Sbjct: 195 GRMHNEKVDLWCIGVLCYELLVGNPPFE---SASHNETYRRIVKVDLK 239

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
Query: 157 IPESILRLPKLRVLQLYN-NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPL 215
           IP S+  LP L  L +   N+L G I   IA  T L  L +   +++G +P  L Q   L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 216 VVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLL-RFRVSNNHLE 274
           V LD S N LSG LP  + S   L       N  SG +PDS      L     +S N L 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 275 GSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAIS 334
           G IP    +L +++ +DLS N   G  +   G+ +N  ++ + +N ++ F   ++  + +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-FDLGKVGLSKN 245
Query: 335 LVKIDLSDNLLSGPIPSGIGNLKKLNLL 362
           L  +DL +N + G +P G+  LK L+ L
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 34/166 (20%)
Query: 266 FRVSNNHLEG-------SIPEGILSLPHVSIIDLS-YNSFSGPIANTVGNARNLSELFMQ 317
           +RV+N  L G        IP  + +LP+++ + +   N+  GPI   +     L  L++ 
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 318 RNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQXXXXXXXXXXXX 377
              +SG IP  + +  +LV +D S N LSG +P  I +L  L  +               
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-------- 161
Query: 378 XXXXXXXXXXXXXXXXTGYIPESLCEL--LPNSINFSNNRLSGPIP 421
                           +G IP+S      L  S+  S NRL+G IP
Sbjct: 162 ----------------SGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 16/222 (7%)
Query: 523 EILEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E +E     N +G+G    VY+ + +++G  VA+K +  ++    A    ++Q       
Sbjct: 8   EKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIK-MIDKKAMYKAGMVQRVQ------N 60
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           EV+    ++H +I++LY YF       LV E   NG +   L   +              
Sbjct: 61  EVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQ 120
Query: 642 VAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
           +  G+ YLH HG    I+HRD+  +N+LL  N   K+ADFG+A  L+    K  T   + 
Sbjct: 121 IITGMLYLHSHG----ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYT---LC 173
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           GT  Y++PE A  S    + DV+S G +   L+ GR P + D
Sbjct: 174 GTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTD 215

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 538 GSGTVYKIDL--------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           G G   K++L        N+GE VAVK L  +      +D         LK E+E L N+
Sbjct: 30  GEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIAD---------LKKEIEILRNL 80
Query: 590 RHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
            H+NIVK    C         L+ E++P+G+L + L K    ++   + K A  + +G+ 
Sbjct: 81  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMD 140
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YL        +HRD+ + N+L++  +Q K+ DFG+ K ++      +          + A
Sbjct: 141 YLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYA 197
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELIT 734
           PE    SK     DV+SFGV L EL+T
Sbjct: 198 PECLMQSKFYIASDVWSFGVTLHELLT 224

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 538 GSGTVYKIDL--------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           G G   K++L        N+GE VAVK L  +      +D         LK E+E L N+
Sbjct: 18  GEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIAD---------LKKEIEILRNL 68
Query: 590 RHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
            H+NIVK    C         L+ E++P+G+L + L K    ++   + K A  + +G+ 
Sbjct: 69  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMD 128
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YL        +HRD+ + N+L++  +Q K+ DFG+ K ++      +          + A
Sbjct: 129 YLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYA 185
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELIT 734
           PE    SK     DV+SFGV L EL+T
Sbjct: 186 PECLMQSKFYIASDVWSFGVTLHELLT 212

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G GG   V+   DL     VAVK L   R  ++   +  L+     + E +    + H 
Sbjct: 20  LGFGGMSEVHLARDLRDHRDVAVKVL---RADLARDPSFYLRF----RREAQNAAALNHP 72
Query: 593 NIVKLY----CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV----AQ 644
            IV +Y        +     +V EY+    L D     +VH + P   K A  V     Q
Sbjct: 73  AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRD-----IVHTEGPMTPKRAIEVIADACQ 127
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L + H    + IIHRD+K  NI++      KV DFGIA+ +   G   + T  + GT  
Sbjct: 128 ALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 184
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
           YL+PE A       + DVYS G VL E++TG  P     GD+ + + +  ++ D
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT---GDSPDSVAYQHVRED 235

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 528 MTEKNKVGQGGSGTVYK--IDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
           +T +  +G G  G VYK  +  +SG+    VA+K L        A  T++ ++D     E
Sbjct: 46  VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTL-------KAGYTEKQRVD--FLGE 96
Query: 583 VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
              +G   H NI++L    S     +++ EYM NG L   L +            +  G+
Sbjct: 97  AGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGI 156
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           A G+ YL +      +HRD+ + NIL++ N   KV+DFG+++VL+       TT+     
Sbjct: 157 AAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIP 213
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             + APE     K T+  DV+SFG+V+ E++T G +P            YW   ++   E
Sbjct: 214 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP------------YW---ELSNHE 258
Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            +  + D     +  D    + ++ ++C  +  A RP   ++V +L
Sbjct: 259 VMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL 304

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 126/287 (43%), Gaps = 33/287 (11%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           ++G G  GTVYK   +    VAVK L     KV     +Q Q     + EV  L   RH 
Sbjct: 43  RIGSGSFGTVYKGKWHGD--VAVKIL-----KVVDPTPEQFQ---AFRNEVAVLRKTRHV 92
Query: 593 NIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           NI+    Y +    NL +V ++    +L+  LH             IA   AQG+ YLH 
Sbjct: 93  NILLFMGYMTK--DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH- 149
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                IIHRD+KS NI L      K+ DFG+A V ++R           G+  ++APE  
Sbjct: 150 --AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV-KSRWSGSQQVEQPTGSVLWMAPEVI 206
Query: 712 Y---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD 768
               ++  + + DVYS+G+VL EL+TG  P      +   II+ V     + +       
Sbjct: 207 RMQDNNPFSFQSDVYSYGIVLYELMTGELPY-SHINNRDQIIFMVGRGYASPD------- 258
Query: 769 KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV---VQLLAEADP 812
             LS  +++    + R+   C  K    RP   ++   ++LL  + P
Sbjct: 259 --LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 17/210 (8%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           VG  G   V K +L +G  VAVK L  Q+ +        L +   ++ E++ L   RH +
Sbjct: 26  VGTFGKVKVGKHEL-TGHKVAVKILNRQKIR-------SLDVVGKIRREIQNLKLFRHPH 77
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I+KLY   S+     +V EY+  G L+D + K    LD     ++   +  G+ Y H  +
Sbjct: 78  IIKLYQVISTPSDIFMVMEYVSGGELFDYICKN-GRLDEKESRRLFQQILSGVDYCHRHM 136
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              ++HRD+K  N+LLD +   K+ADFG++ ++              G+  Y APE    
Sbjct: 137 ---VVHRDLKPENVLLDAHMNAKIADFGLSNMM----SDGEFLRXSCGSPNYAAPEVISG 189
Query: 714 S-KATTKCDVYSFGVVLMELITGRKPVEDD 742
              A  + D++S GV+L  L+ G  P +DD
Sbjct: 190 RLYAGPEVDIWSSGVILYALLCGTLPFDDD 219

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
            + E +    + H  IV +Y    +         +V EY+    L D     +VH + P 
Sbjct: 59  FRREAQNAAALNHPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRD-----IVHTEGPM 113
Query: 635 RHKIAFGV----AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
             K A  V     Q L + H    + IIHRD+K  NI++      KV DFGIA+ +   G
Sbjct: 114 TPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG 170
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
              + T  + GT  YL+PE A       + DVYS G VL E++TG  P     GD+   +
Sbjct: 171 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT---GDSPVSV 227
Query: 751 YWVSIKVD 758
            +  ++ D
Sbjct: 228 AYQHVRED 235

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 16/214 (7%)
Query: 524 ILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           ++E   +  KVG+G  G VYK   + G +VA+K     R ++ A D     +      E+
Sbjct: 19  LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALK-----RIRLDAEDEG---IPSTAIREI 70
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
             L  + H NIV L     S  C  LV+E+M   +L   L +    L         + + 
Sbjct: 71  SLLKELHHPNIVSLIDVIHSERCLTLVFEFM-EKDLKKVLDENKTGLQDSQIKIYLYQLL 129
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           +G+A+ H      I+HRD+K  N+L++ +   K+ADFG+A+   A G    + T    T 
Sbjct: 130 RGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLAR---AFGIPVRSYTHEVVTL 183
Query: 704 GYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
            Y AP+    SK  +T  D++S G +  E+ITG+
Sbjct: 184 WYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGK 217

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 16/214 (7%)
Query: 524 ILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           ++E   +  KVG+G  G VYK   + G +VA+K     R ++ A D     +      E+
Sbjct: 19  LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALK-----RIRLDAEDEG---IPSTAIREI 70
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
             L  + H NIV L     S  C  LV+E+M   +L   L +    L         + + 
Sbjct: 71  SLLKELHHPNIVSLIDVIHSERCLTLVFEFM-EKDLKKVLDENKTGLQDSQIKIYLYQLL 129
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           +G+A+ H      I+HRD+K  N+L++ +   K+ADFG+A+   A G    + T    T 
Sbjct: 130 RGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLAR---AFGIPVRSYTHEVVTL 183
Query: 704 GYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
            Y AP+    SK  +T  D++S G +  E+ITG+
Sbjct: 184 WYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGK 217

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 102/234 (43%), Gaps = 27/234 (11%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G GG   V+   DL     VAVK L   R  ++   +  L+     + E +    + H 
Sbjct: 20  LGFGGMSEVHLARDLRDHRDVAVKVL---RADLARDPSFYLRF----RREAQNAAALNHP 72
Query: 593 NIVKLY----CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV----AQ 644
            IV +Y        +     +V EY+    L D     +VH + P   K A  V     Q
Sbjct: 73  AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRD-----IVHTEGPMTPKRAIEVIADACQ 127
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L + H    + IIHRD+K  NIL+      KV DFGIA+ +   G     T  + GT  
Sbjct: 128 ALNFSHQ---NGIIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTAQ 184
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
           YL+PE A       + DVYS G VL E++TG  P     GD+   + +  ++ D
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT---GDSPVSVAYQHVRED 235

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 103/234 (44%), Gaps = 27/234 (11%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G GG   V+   DL     VAVK L   R  ++   +  L+     + E +    + H 
Sbjct: 20  LGFGGMSEVHLARDLRDHRDVAVKVL---RADLARDPSFYLRF----RREAQNAAALNHP 72
Query: 593 NIVKLY----CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV----AQ 644
            IV +Y        +     +V EY+    L D     +VH + P   K A  V     Q
Sbjct: 73  AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRD-----IVHTEGPMTPKRAIEVIADACQ 127
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L + H    + IIHRD+K  NI++      KV DFGIA+ +   G   + T  + GT  
Sbjct: 128 ALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 184
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
           YL+PE A       + DVYS G VL E++TG  P     GD+   + +  ++ D
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT---GDSPVSVAYQHVRED 235

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 579 LKTEVETLGNIRHKNIVKLY----CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
            + E +    + H  IV +Y        +     +V EY+    L D     +VH + P 
Sbjct: 59  FRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRD-----IVHTEGPM 113
Query: 635 RHKIAFGV----AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
             K A  V     Q L + H    + IIHRD+K  NI++      KV DFGIA+ +   G
Sbjct: 114 TPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG 170
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
              + T  + GT  YL+PE A       + DVYS G VL E++TG  P     GD+   +
Sbjct: 171 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT---GDSPVSV 227
Query: 751 YWVSIKVD 758
            +  ++ D
Sbjct: 228 AYQHVRED 235

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 512 KSFHRISFDQREILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDT 570
           K+  R+  DQ +    +    K+G+G +G V    + +SG  VAVK +          D 
Sbjct: 31  KAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMM----------DL 80
Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
            + Q  + L  EV  + + +H N+V++Y  +       ++ E++  G L D + +  V L
Sbjct: 81  RKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ--VRL 138
Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
           +      +   V Q LAYLH      +IHRDIKS +ILL ++ + K++DFG      A+ 
Sbjct: 139 NEEQIATVCEAVLQALAYLHA---QGVIHRDIKSDSILLTLDGRVKLSDFGFC----AQI 191
Query: 691 GKD-STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
            KD      + GT  ++APE    S   T+ D++S G++++E++ G  P   D
Sbjct: 192 SKDVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD 244

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 25/214 (11%)
Query: 529 TEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTVY  +D+ +G+ VA++++          +  Q    + +  E+  + 
Sbjct: 23  TRFEKIGQGASGTVYTAMDVATGQEVAIRQM----------NLQQQPKKELIINEILVMR 72
Query: 588 NIRHKNIVKL---YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             ++ NIV     Y     L+   +V EY+  G+L D + +    +D      +     Q
Sbjct: 73  ENKNPNIVNYLDSYLVGDELW---VVMEYLAGGSLTDVVTETC--MDEGQIAAVCRECLQ 127
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L +LH    + +IHRDIKS NILL ++   K+ DFG    +     K ST   + GT  
Sbjct: 128 ALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST---MVGTPY 181
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           ++APE         K D++S G++ +E+I G  P
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 113/256 (44%), Gaps = 31/256 (12%)
Query: 521 QREILEA-MTEKNKVGQ--------------GGSGTVYKIDLNSGEVVAVKKLWSQRTKV 565
           QR+ LEA +T+K KVG+              G  G V+K+      +V  +KL     K 
Sbjct: 13  QRKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKP 72
Query: 566 SASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK 625
           +  +         +  E++ L       IV  Y  F S     +  E+M  G+L D + K
Sbjct: 73  AIRNQ--------IIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLK 123
Query: 626 GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV 685
               +      K++  V +GL YL       I+HRD+K +NIL++   + K+ DFG++  
Sbjct: 124 KAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ 181
Query: 686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD 745
           L      DS      GT  Y++PE    +  + + D++S G+ L+E+  GR P+      
Sbjct: 182 L-----IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAK 236
Query: 746 NKNIIYWVSIKVDTKE 761
              +++   ++ D  E
Sbjct: 237 ELELMFGCQVEGDAAE 252

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 113/256 (44%), Gaps = 31/256 (12%)
Query: 521 QREILEA-MTEKNKVGQ--------------GGSGTVYKIDLNSGEVVAVKKLWSQRTKV 565
           QR+ LEA +T+K KVG+              G  G V+K+      +V  +KL     K 
Sbjct: 48  QRKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKP 107
Query: 566 SASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK 625
           +  +         +  E++ L       IV  Y  F S     +  E+M  G+L D + K
Sbjct: 108 AIRNQ--------IIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLK 158
Query: 626 GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV 685
               +      K++  V +GL YL       I+HRD+K +NIL++   + K+ DFG++  
Sbjct: 159 KAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ 216
Query: 686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD 745
           L      DS      GT  Y++PE    +  + + D++S G+ L+E+  GR P+      
Sbjct: 217 L-----IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAK 271
Query: 746 NKNIIYWVSIKVDTKE 761
              +++   ++ D  E
Sbjct: 272 ELELMFGCQVEGDAAE 287

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 20/218 (9%)
Query: 523 EILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      
Sbjct: 7   EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIR 58
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIA 639
           E+  L  + H NIVKL     +     LV+E++        DA    L  +  P      
Sbjct: 59  EISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYL 116
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
           F + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T  
Sbjct: 117 FQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHE 170
Query: 700 AGTYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
             T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 171 VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 208

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 579 LKTEVETLGNIRHKNIVKLY----CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
            + E +    + H  IV +Y        +     +V EY+    L D     +VH + P 
Sbjct: 76  FRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRD-----IVHTEGPM 130
Query: 635 RHKIAFGV----AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
             K A  V     Q L + H    + IIHRD+K  NI++      KV DFGIA+ +   G
Sbjct: 131 TPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG 187
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
              + T  + GT  YL+PE A       + DVYS G VL E++TG  P     GD+   +
Sbjct: 188 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT---GDSPVSV 244
Query: 751 YWVSIKVD 758
            +  ++ D
Sbjct: 245 AYQHVRED 252

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 20/218 (9%)
Query: 523 EILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      
Sbjct: 7   EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIR 58
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIA 639
           E+  L  + H NIVKL     +     LV+E++        DA    L  +  P      
Sbjct: 59  EISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYL 116
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
           F + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T  
Sbjct: 117 FQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHE 170
Query: 700 AGTYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
             T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 171 VVTLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMVTRR 208

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 28/210 (13%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVETLGN 588
           K+G+G  G VYK   N GE  A+KK+  ++             D+G+ +    E+  L  
Sbjct: 9   KIGEGTYGVVYKAQNNYGETFALKKIRLEKE------------DEGIPSTTIREISILKE 56
Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           ++H NIVKLY    +    +LV+E++      L D    GL  +   T       +  G+
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESV---TAKSFLLQLLNGI 113
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           AY H      ++HRD+K  N+L++   + K+ADFG+A+       K +   V   T  Y 
Sbjct: 114 AYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVV---TLWYR 167
Query: 707 APEYAYSSKA-TTKCDVYSFGVVLMELITG 735
           AP+    SK  +T  D++S G +  E++ G
Sbjct: 168 APDVLMGSKKYSTTIDIWSVGCIFAEMVNG 197

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 28/210 (13%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVETLGN 588
           K+G+G  G VYK   N GE  A+KK+  ++             D+G+ +    E+  L  
Sbjct: 9   KIGEGTYGVVYKAQNNYGETFALKKIRLEKE------------DEGIPSTTIREISILKE 56
Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           ++H NIVKLY    +    +LV+E++      L D    GL  +   T       +  G+
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESV---TAKSFLLQLLNGI 113
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           AY H      ++HRD+K  N+L++   + K+ADFG+A+       K +   V   T  Y 
Sbjct: 114 AYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVV---TLWYR 167
Query: 707 APEYAYSSKA-TTKCDVYSFGVVLMELITG 735
           AP+    SK  +T  D++S G +  E++ G
Sbjct: 168 APDVLMGSKKYSTTIDIWSVGCIFAEMVNG 197

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 28/210 (13%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVETLGN 588
           K+G+G  G VYK   N GE  A+KK+  ++             D+G+ +    E+  L  
Sbjct: 9   KIGEGTYGVVYKAQNNYGETFALKKIRLEKE------------DEGIPSTTIREISILKE 56
Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           ++H NIVKLY    +    +LV+E++      L D    GL  +   T       +  G+
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESV---TAKSFLLQLLNGI 113
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           AY H      ++HRD+K  N+L++   + K+ADFG+A+       K +   V   T  Y 
Sbjct: 114 AYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIV---TLWYR 167
Query: 707 APEYAYSSKA-TTKCDVYSFGVVLMELITG 735
           AP+    SK  +T  D++S G +  E++ G
Sbjct: 168 APDVLMGSKKYSTTIDIWSVGCIFAEMVNG 197

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 57/311 (18%)
Query: 517 ISFDQREILEA-MTEKNKVGQ--------------GGSGTVYKIDLNSGEVVAVKKLWSQ 561
           ++  QR+ LEA +T+K KVG+              G  G V+K+      +V  +KL   
Sbjct: 1   MTLQQRKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHL 60
Query: 562 RTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWD 621
             K +  +         +  E++ L       IV  Y  F S     +  E+M  G+L D
Sbjct: 61  EIKPAIRNQ--------IIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSL-D 111
Query: 622 ALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
            + K    +      K++  V +GL YL       I+HRD+K +NIL++   + K+ DFG
Sbjct: 112 QVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFG 169
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           ++  L      DS      GT  Y++PE    +  + + D++S G+ L+E+  GR P+  
Sbjct: 170 VSGQL-----IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIGS 224
Query: 742 DFGDNKNIIYWVSIKVDTKEGIMEVLD--------KKLSGSFRDEMIQVLRIAIRCTSKS 793
             G                  I E+LD        K  SG F  E    +    +C  K+
Sbjct: 225 GSGSM---------------AIFELLDYIVNEPPPKLPSGVFSLEFQDFVN---KCLIKN 266
Query: 794 PATRPTMNEVV 804
           PA R  + +++
Sbjct: 267 PAERADLKQLM 277

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 129/282 (45%), Gaps = 40/282 (14%)
Query: 529 TEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTVY  +D+ +G+ VA++++          +  Q    + +  E+  + 
Sbjct: 24  TRFEKIGQGASGTVYTAMDVATGQEVAIRQM----------NLQQQPKKELIINEILVMR 73
Query: 588 NIRHKNIVKL---YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             ++ NIV     Y     L+   +V EY+  G+L D + +    +D      +     Q
Sbjct: 74  ENKNPNIVNYLDSYLVGDELW---VVMEYLAGGSLTDVVTETC--MDEGQIAAVCRECLQ 128
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L +LH    + +IHR+IKS NILL ++   K+ DFG    +     K ST   + GT  
Sbjct: 129 ALEFLHS---NQVIHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST---MVGTPY 182
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE         K D++S G++ +E+I G  P  ++  +    +Y ++       G  
Sbjct: 183 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE--NPLRALYLIATN-----GTP 235
Query: 765 EVLD-KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           E+ + +KLS  FRD          RC       R +  E++Q
Sbjct: 236 ELQNPEKLSAIFRD-------FLNRCLEMDVEKRGSAKELIQ 270

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 529 TEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTVY  +D+ +G+ VA++++          +  Q    + +  E+  + 
Sbjct: 24  TRFEKIGQGASGTVYTAMDVATGQEVAIRQM----------NLQQQPKKELIINEILVMR 73
Query: 588 NIRHKNIVKL---YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             ++ NIV     Y     L+   +V EY+  G+L D + +    +D      +     Q
Sbjct: 74  ENKNPNIVNYLDSYLVGDELW---VVMEYLAGGSLTDVVTETC--MDEGQIAAVCRECLQ 128
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L +LH    + +IHRDIKS NILL ++   K+ DFG    +     K S    + GT  
Sbjct: 129 ALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSX---MVGTPY 182
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           ++APE         K D++S G++ +E+I G  P
Sbjct: 183 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 216

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 129/281 (45%), Gaps = 35/281 (12%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K K+G G  G V+ ++  S  +  V K  ++       D  Q+ +++ ++ E+E L ++ 
Sbjct: 27  KRKLGSGAFGDVHLVEERSSGLERVIKTINK-------DRSQVPMEQ-IEAEIEVLKSLD 78
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLA 647
           H NI+K++  F   +   +V E    G L + +          +   +A  + Q    LA
Sbjct: 79  HPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALA 138
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVN--YQP-KVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           Y H      ++H+D+K  NIL      + P K+ DFG+A++ ++    D  +T  AGT  
Sbjct: 139 YFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKS----DEHSTNAAGTAL 191
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           Y+APE  +    T KCD++S GVV+  L+TG  P           +  V  K   KE   
Sbjct: 192 YMAPE-VFKRDVTFKCDIWSAGVVMYFLLTGCLPF------TGTSLEEVQQKATYKEPNY 244
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            V  + L+    D + Q+L       +K P  RP+  +V+ 
Sbjct: 245 AVECRPLTPQAVDLLKQML-------TKDPERRPSAAQVLH 278

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 529 TEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTVY  +D+ +G+ VA++++          +  Q    + +  E+  + 
Sbjct: 23  TRFEKIGQGASGTVYTAMDVATGQEVAIRQM----------NLQQQPKKELIINEILVMR 72
Query: 588 NIRHKNIVKL---YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             ++ NIV     Y     L+   +V EY+  G+L D + +    +D      +     Q
Sbjct: 73  ENKNPNIVNYLDSYLVGDELW---VVMEYLAGGSLTDVVTETC--MDEGQIAAVCRECLQ 127
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L +LH    + +IHRDIKS NILL ++   K+ DFG    +     K S    + GT  
Sbjct: 128 ALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSE---MVGTPY 181
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           ++APE         K D++S G++ +E+I G  P
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 529 TEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTVY  +D+ +G+ VA++++          +  Q    + +  E+  + 
Sbjct: 23  TRFEKIGQGASGTVYTAMDVATGQEVAIRQM----------NLQQQPKKELIINEILVMR 72
Query: 588 NIRHKNIVKL---YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             ++ NIV     Y     L+   +V EY+  G+L D + +    +D      +     Q
Sbjct: 73  ENKNPNIVNYLDSYLVGDELW---VVMEYLAGGSLTDVVTETC--MDEGQIAAVCRECLQ 127
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L +LH    + +IHRDIKS NILL ++   K+ DFG    +     K S    + GT  
Sbjct: 128 ALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSX---MVGTPY 181
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           ++APE         K D++S G++ +E+I G  P
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 79.3 bits (194), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 532 NKVGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +K+G GG  TVY  +     + VA+K ++           ++ +  K  + EV     + 
Sbjct: 17  DKLGGGGMSTVYLAEDTILNIKVAIKAIF-------IPPREKEETLKRFEREVHNSSQLS 69
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H+NIV +        C  LV EY+    L + +     H        I F   Q L  + 
Sbjct: 70  HQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIES---HGPLSVDTAINF-TNQILDGIK 125
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
           H     I+HRDIK  NIL+D N   K+ DFGIAK L       + T  + GT  Y +PE 
Sbjct: 126 HAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSL--TQTNHVLGTVQYFSPEQ 183
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGRKP 738
           A   +AT +C D+YS G+VL E++ G  P
Sbjct: 184 A-KGEATDECTDIYSIGIVLYEMLVGEPP 211

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 27/213 (12%)
Query: 534 VGQGGSGTVYKIDLNSGE-VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY       + ++A+K L+        S  ++  ++  L+ E+E   ++RH 
Sbjct: 22  LGKGKFGNVYLAREKQNKFIMALKVLFK-------SQLEKEGVEHQLRREIEIQSHLRHP 74
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+++Y YF       L+ E+ P G L+  L K   H  +  +    F   +A  L Y H
Sbjct: 75  NILRMYNYFHDRKRIYLMLEFAPRGELYKELQK---HGRFDEQRSATFMEELADALHYCH 131
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGI---AKVLQARGGKDSTTTVIAGTYGYLA 707
                 +IHRDIK  N+L+    + K+ADFG    A  L+ R         + GT  YL 
Sbjct: 132 E---RKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRR--------XMCGTLDYLP 180
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           PE         K D++  GV+  E + G  P +
Sbjct: 181 PEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFD 213

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 22  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 67
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 68  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 126
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 127 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 180
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 181 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 239
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 240 LGTPTREQIREM 251

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 66
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 67  MRKLDHCNIVRLRYFFYSSGEKKDVVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 125
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 126 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 179
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 180 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 238
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 239 LGTPTREQIREM 250

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 66
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 67  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 125
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 126 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 179
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 180 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 238
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 239 LGTPTREQIREM 250

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 66
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 67  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 125
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 126 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 179
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 180 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 238
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 239 LGTPTREQIREM 250

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 27/213 (12%)
Query: 534 VGQGGSGTVYKIDLNSGE-VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY       + ++A+K L+        S  ++  ++  L+ E+E   ++RH 
Sbjct: 23  LGKGKFGNVYLAREKQNKFIMALKVLFK-------SQLEKEGVEHQLRREIEIQSHLRHP 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+++Y YF       L+ E+ P G L+  L K   H  +  +    F   +A  L Y H
Sbjct: 76  NILRMYNYFHDRKRIYLMLEFAPRGELYKELQK---HGRFDEQRSATFMEELADALHYCH 132
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGI---AKVLQARGGKDSTTTVIAGTYGYLA 707
                 +IHRDIK  N+L+    + K+ADFG    A  L+ R         + GT  YL 
Sbjct: 133 E---RKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRR--------XMCGTLDYLP 181
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           PE         K D++  GV+  E + G  P +
Sbjct: 182 PEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFD 214

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 34  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 79
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 80  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 138
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 139 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 192
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 193 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 251
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 252 LGTPTREQIREM 263

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 66
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 67  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 125
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 126 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 179
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 180 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 238
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 239 LGTPTREQIREM 250

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 33  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 78
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 79  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 137
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 138 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 191
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 192 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 250
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 251 LGTPTREQIREM 262

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 25  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 70
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 71  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 129
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 130 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 183
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 184 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 242
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 243 LGTPTREQIREM 254

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 40  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 85
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 86  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 144
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 145 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 198
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 199 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 257
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 258 LGTPTREQIREM 269

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 55  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 100
Query: 586 LGNIRHKNIVKL-YCYFSS------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L Y ++SS      +Y NL V +Y+P      A H        P  +  
Sbjct: 101 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 159
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 160 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 213
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 214 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 272
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 273 LGTPTREQIREM 284

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 29  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 74
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 75  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 133
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 134 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 187
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 188 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 246
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 247 LGTPTREQIREM 258

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 33  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 78
Query: 586 LGNIRHKNIVKL-YCYFSS------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L Y ++SS      +Y NL V +Y+P      A H        P  +  
Sbjct: 79  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 137
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 138 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 191
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 192 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 250
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 251 LGTPTREQIREM 262

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 112 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 165
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 TLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 100 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 145
Query: 586 LGNIRHKNIVKL-YCYFSS------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L Y ++SS      +Y NL V +Y+P      A H        P  +  
Sbjct: 146 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 204
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 205 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 258
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 259 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 317
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 318 LGTPTREQIREM 329

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 55  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 100
Query: 586 LGNIRHKNIVKL-YCYFSS------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L Y ++SS      +Y NL V +Y+P      A H        P  +  
Sbjct: 101 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 159
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 160 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 213
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 214 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 272
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 273 LGTPTREQIREM 284

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 54
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 55  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 112
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 113 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 166
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 26  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 71
Query: 586 LGNIRHKNIVKL-YCYFSS------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L Y ++SS      +Y NL V +Y+P      A H        P  +  
Sbjct: 72  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 130
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 131 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 184
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 185 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 243
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 244 LGTPTREQIREM 255

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 57  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 102
Query: 586 LGNIRHKNIVKL-YCYFSS------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L Y ++SS      +Y NL V +Y+P      A H        P  +  
Sbjct: 103 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 161
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 162 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 215
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 216 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 274
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 275 LGTPTREQIREM 286

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 30/292 (10%)
Query: 522 REILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           +E  +    K+ +G+G S  V + +   +G   AVK +     ++S    ++++  +  +
Sbjct: 90  KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVR--EATR 147
Query: 581 TEVETLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIA 639
            E   L  +  H +I+ L   + S     LV++ M  G L+D L + +   +  TR  I 
Sbjct: 148 RETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETR-SIM 206
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
             + + +++LH    + I+HRD+K  NILLD N Q +++DFG +  L+  G K      +
Sbjct: 207 RSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEP-GEK---LREL 259
Query: 700 AGTYGYLAPEYAYSSKATT------KCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
            GT GYLAPE    S   T      + D+++ GV+L  L+ G  P            +W 
Sbjct: 260 CGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPP------------FWH 307
Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             ++     IME   +  S  + D    V  +  R     P  R T  + +Q
Sbjct: 308 RRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 59  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 104
Query: 586 LGNIRHKNIVKL-YCYFSS------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L Y ++SS      +Y NL V +Y+P      A H        P  +  
Sbjct: 105 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 163
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 164 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 217
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 218 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 276
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 277 LGTPTREQIREM 288

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 112 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 165
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 52
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 53  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 110
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 111 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 164
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ  +    E++ 
Sbjct: 49  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQDKRFKNRELQI 94
Query: 586 LGNIRHKNIVKL-YCYFSS------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L Y ++SS      +Y NL V +Y+P      A H        P  +  
Sbjct: 95  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 153
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 154 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 207
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 208 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 266
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 267 LGTPTREQIREM 278

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 112 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 165
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 145/319 (45%), Gaps = 53/319 (16%)
Query: 504 SSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQR 562
           SS  P+   S +R  ++ +E+         +G G +  V         E VA+K++  ++
Sbjct: 5   SSALPW---SINRDDYELQEV---------IGSGATAVVQAAYCAPKKEKVAIKRINLEK 52
Query: 563 TKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDA 622
            + S        +D+ LK E++ +    H NIV  Y  F       LV + +  G++ D 
Sbjct: 53  CQTS--------MDELLK-EIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDI 103
Query: 623 L--------HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ 674
           +        HK  V LD  T   I   V +GL YLH    +  IHRD+K+ NILL  +  
Sbjct: 104 IKHIVAKGEHKSGV-LDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDGS 159
Query: 675 PKVADFGIAKVLQARGG---KDSTTTVIAGTYGYLAPEYAYSSKATT-KCDVYSFGVVLM 730
            ++ADFG++  L A GG   ++       GT  ++APE     +    K D++SFG+  +
Sbjct: 160 VQIADFGVSAFL-ATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAI 218
Query: 731 ELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD----KKLSGSFRDEMIQVLRIA 786
           EL TG  P    +   K ++  ++++ D       V D    KK   SFR +MI +    
Sbjct: 219 ELATGAAPYH-KYPPMKVLM--LTLQNDPPSLETGVQDKEMLKKYGKSFR-KMISL---- 270
Query: 787 IRCTSKSPATRPTMNEVVQ 805
             C  K P  RPT  E+++
Sbjct: 271 --CLQKDPEKRPTAAELLR 287

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 17/231 (7%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +++G G  G V K+      ++  +KL     K +  +         +  E++ L     
Sbjct: 22  SELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQ--------IIRELQVLHECNS 73
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             IV  Y  F S     +  E+M  G+L D + K    +      K++  V +GLAYL  
Sbjct: 74  PYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKEAKRIPEEILGKVSIAVLRGLAYLRE 132
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I+HRD+K +NIL++   + K+ DFG++  L      DS      GT  Y+APE  
Sbjct: 133 K--HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMAPERL 185
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
             +  + + D++S G+ L+EL  GR P+          I+   + VD +EG
Sbjct: 186 QGTHYSVQSDIWSMGLSLVELAVGRYPIPPPDAKELEAIFGRPV-VDGEEG 235

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 6   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 57
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 58  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 115
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 116 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 169
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 170 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 205

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++FD  EIL A      +G+G  G V  +  N  + +   K  +++  V  ++       
Sbjct: 12  VNFDHFEILRA------IGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEV------ 59
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           + +  E++ +  + H  +V L+  F       +V + +  G+L   L +  VH    T  
Sbjct: 60  RNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN-VHFKEETVK 118
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
                +   L YL +     IIHRD+K  NILLD +    + DF IA +L     +++  
Sbjct: 119 LFICELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFNIAAML----PRETQI 171
Query: 697 TVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKP 738
           T +AGT  Y+APE   S K    +   D +S GV   EL+ GR+P
Sbjct: 172 TTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRP 216

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 40/271 (14%)
Query: 551 EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV 610
           E VA+K++  ++ + S        +D+ LK E++ +    H NIV  Y  F       LV
Sbjct: 36  EKVAIKRINLEKCQTS--------MDELLK-EIQAMSQCHHPNIVSYYTSFVVKDELWLV 86
Query: 611 YEYMPNGNLWDAL--------HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDI 662
            + +  G++ D +        HK  V LD  T   I   V +GL YLH    +  IHRD+
Sbjct: 87  MKLLSGGSVLDIIKHIVAKGEHKSGV-LDESTIATILREVLEGLEYLHK---NGQIHRDV 142
Query: 663 KSTNILLDVNYQPKVADFGIAKVLQARGG---KDSTTTVIAGTYGYLAPEYAYSSKATT- 718
           K+ NILL  +   ++ADFG++  L A GG   ++       GT  ++APE     +    
Sbjct: 143 KAGNILLGEDGSVQIADFGVSAFL-ATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDF 201
Query: 719 KCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD----KKLSGS 774
           K D++SFG+  +EL TG  P    +   K ++  ++++ D       V D    KK   S
Sbjct: 202 KADIWSFGITAIELATGAAPYH-KYPPMKVLM--LTLQNDPPSLETGVQDKEMLKKYGKS 258
Query: 775 FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           FR +MI +      C  K P  RPT  E+++
Sbjct: 259 FR-KMISL------CLQKDPEKRPTAAELLR 282

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 102/224 (45%), Gaps = 35/224 (15%)
Query: 546 DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK-----------TEVETLGNIRHKNI 594
           DL  GEV+  K  + Q  KV+  +T ++ + K L             EV+ +  + H N+
Sbjct: 11  DLIHGEVLG-KGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNV 69
Query: 595 VKLYCYFSSLYCNL---LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           +K   +   LY +     + EY+  G L   +        W  R   A  +A G+AYLH 
Sbjct: 70  LK---FIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHS 126
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-----QARG-------GKDSTTTVI 699
                IIHRD+ S N L+  N    VADFG+A+++     Q  G        +    TV+
Sbjct: 127 ---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVV 183
Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF 743
              Y ++APE         K DV+SFG+VL E+I GR   + D+
Sbjct: 184 GNPY-WMAPEMINGRSYDEKVDVFSFGIVLCEII-GRVNADPDY 225

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 118/252 (46%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ       E++ 
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQGKAFKNRELQI 66
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 67  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 125
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 126 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 179
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 180 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 238
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 239 LGTPTREQIREM 250

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 118/289 (40%), Gaps = 36/289 (12%)
Query: 532 NKVGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT---EVETL 586
            K+G G  G V +   D  SG+ V+V         V     D L   + +     EV  +
Sbjct: 24  EKLGDGSFGVVRRGEWDAPSGKTVSVA--------VKCLKPDVLSQPEAMDDFIREVNAM 75
Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            ++ H+N+++LY    +    + V E  P G+L D L K   H    T  + A  VA+G+
Sbjct: 76  HSLDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGM 134
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            YL        IHRD+ + N+LL      K+ DFG+ + L                + + 
Sbjct: 135 GYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPFAWC 191
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           APE   +   +   D + FGV L E+ T G++P             W+ +       I+ 
Sbjct: 192 APESLKTRTFSHASDTWMFGVTLWEMFTYGQEP-------------WIGL---NGSQILH 235
Query: 766 VLDKKLSGSFRDEMI--QVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
            +DK+     R E     +  + ++C +  P  RPT   +   L EA P
Sbjct: 236 KIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 284

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 147/316 (46%), Gaps = 46/316 (14%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           QR I + +    ++G+G  G V+ +    GE VAVK  ++         T++    +  +
Sbjct: 32  QRTIAKQIQMVKQIGKGRYGEVW-MGKWRGEKVAVKVFFT---------TEEASWFR--E 79
Query: 581 TEVETLGNIRHKNI-------VKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
           TE+     +RH+NI       +K    ++ LY   L+ +Y  NG+L+D L      LD  
Sbjct: 80  TEIYQTVLMRHENILGFIAADIKGTGSWTQLY---LITDYHENGSLYDYLKS--TTLDAK 134
Query: 634 TRHKIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIA-KVLQ 687
           +  K+A+    GL +LH  + S      I HRD+KS NIL+  N    +AD G+A K + 
Sbjct: 135 SMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFIS 194
Query: 688 ARGGKDSTTTVIAGTYGYLAPEYAYSS------KATTKCDVYSFGVVLMELITGRKPVED 741
                D       GT  Y+ PE    S      ++    D+YSFG++L E+   R+ V  
Sbjct: 195 DTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEV--ARRCVSG 252
Query: 742 DFGDNKNIIYWVSIKVD-TKEGIMEVLD-KKLSGSF-----RDEMI-QVLRIAIRCTSKS 793
              +   + Y   +  D + E + E++  KKL  SF      DE + Q+ ++   C + +
Sbjct: 253 GIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHN 312
Query: 794 PATRPTMNEVVQLLAE 809
           PA+R T   V + LA+
Sbjct: 313 PASRLTALRVKKTLAK 328

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 20/215 (9%)
Query: 526 EAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+ 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREIS 53
Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFGV 642
            L  + H NIVKL     +     LV+E++        DA    L  +  P      F +
Sbjct: 54  LLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQL 111
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    T
Sbjct: 112 LQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVT 165
Query: 703 YGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
             Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 LWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 118/252 (46%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ       E++ 
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQGKAFKNRELQI 66
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 67  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPETVYRVARHYSRAKQTLPVIYVK 125
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 126 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 179
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 180 VSYICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 238
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 239 LGTPTREQIREM 250

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 56
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEY--MPNGNLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E+  M   +  DA    L  +  P      F 
Sbjct: 57  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLSMDLKDFMDA--SALTGIPLPLIKSYLFQ 114
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 115 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 168
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 16/230 (6%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +++G G  G V+K+      +V  +KL     K +  +         +  E++ L     
Sbjct: 12  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQ--------IIRELQVLHECNS 63
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             IV  Y  F S     +  E+M  G+L D + K    +      K++  V +GL YL  
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQILGKVSIAVIKGLTYLRE 122
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I+HRD+K +NIL++   + K+ DFG++  L      DS      GT  Y++PE  
Sbjct: 123 K--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMSPERL 175
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             +  + + D++S G+ L+E+  GR P+         +++   ++ D  E
Sbjct: 176 QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAE 225

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 18/215 (8%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGV 642
             L  + H NIVKL     +     LV+E++ + +L D +    L  +  P      F +
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKDFMDASALTGIPLPLIKSYLFQL 112
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      T
Sbjct: 113 LQGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVT 166
Query: 703 YGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
             Y APE     K  +T  D++S G +  E++T R
Sbjct: 167 LWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 40/287 (13%)
Query: 528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +T   ++G G  G V+     + + VA+K +     + S S+ D ++       E E + 
Sbjct: 29  LTFVQEIGSGQFGLVHLGYWLNKDKVAIKTI----KEGSMSEDDFIE-------EAEVMM 77
Query: 588 NIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVA 643
            + H  +V+LY  C   +  C  LV+E+M +G L D L   +GL   +  T   +   V 
Sbjct: 78  KLSHPKLVQLYGVCLEQAPIC--LVFEFMEHGCLSDYLRTQRGLFAAE--TLLGMCLDVC 133
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           +G+AYL       +IHRD+ + N L+  N   KV+DFG+ + +       ST T     +
Sbjct: 134 EGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 190
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
              +PE    S+ ++K DV+SFGV++ E+ + G+ P E+    N  ++       D   G
Sbjct: 191 A--SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR--SNSEVVE------DISTG 240
Query: 763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
              +   +L+ +       V +I   C  + P  RP  + +++ LAE
Sbjct: 241 F-RLYKPRLAST------HVYQIMNHCWKERPEDRPAFSRLLRQLAE 280

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 16/230 (6%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +++G G  G V+K+      +V  +KL     K +  +         +  E++ L     
Sbjct: 12  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQ--------IIRELQVLHECNS 63
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             IV  Y  F S     +  E+M  G+L D + K    +      K++  V +GL YL  
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQILGKVSIAVIKGLTYLRE 122
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I+HRD+K +NIL++   + K+ DFG++  L      DS      GT  Y++PE  
Sbjct: 123 K--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMSPERL 175
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             +  + + D++S G+ L+E+  GR P+         +++   ++ D  E
Sbjct: 176 QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAE 225

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 16/230 (6%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +++G G  G V+K+      +V  +KL     K +  +         +  E++ L     
Sbjct: 12  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQ--------IIRELQVLHECNS 63
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             IV  Y  F S     +  E+M  G+L D + K    +      K++  V +GL YL  
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQILGKVSIAVIKGLTYLRE 122
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I+HRD+K +NIL++   + K+ DFG++  L      DS      GT  Y++PE  
Sbjct: 123 K--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMSPERL 175
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             +  + + D++S G+ L+E+  GR P+         +++   ++ D  E
Sbjct: 176 QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAE 225

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 16/230 (6%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +++G G  G V+K+      +V  +KL     K +  +         +  E++ L     
Sbjct: 12  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQ--------IIRELQVLHECNS 63
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             IV  Y  F S     +  E+M  G+L D + K    +      K++  V +GL YL  
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQILGKVSIAVIKGLTYLRE 122
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I+HRD+K +NIL++   + K+ DFG++  L      DS      GT  Y++PE  
Sbjct: 123 K--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMSPERL 175
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             +  + + D++S G+ L+E+  GR P+         +++   ++ D  E
Sbjct: 176 QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAE 225

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 4   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 55
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEY--MPNGNLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E+  M   +  DA    L  +  P      F 
Sbjct: 56  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLSMDLKDFMDA--SALTGIPLPLIKSYLFQ 113
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 114 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 167
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 168 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 31/221 (14%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+G G  G V+    N    VAVK +      V A              E   
Sbjct: 15  ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEA-----------FLAEANV 63
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG-- 641
           +  ++H  +VKL+   +   +Y   ++ E+M  G+L D L K       P    I F   
Sbjct: 64  MKTLQHDKLVKLHAVVTKEPIY---IITEFMAKGSLLDFL-KSDEGSKQPLPKLIDFSAQ 119
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A+G+A++        IHRD+++ NIL+  +   K+ADFG+A+V++     D+  T   G
Sbjct: 120 IAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIE-----DNEYTAREG 171
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
                 + APE       T K DV+SFG++LME++T GR P
Sbjct: 172 AKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIP 212

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 118/252 (46%), Gaps = 34/252 (13%)
Query: 527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           + T+   +G G  G VY+  L +SGE+VA+KK+              LQ       E++ 
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV--------------LQGKAFKNRELQI 66
Query: 586 LGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK- 637
           +  + H NIV+L  +F S       +Y NL V +Y+P      A H        P  +  
Sbjct: 67  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVPATVYRVARHYSRAKQTLPVIYVK 125
Query: 638 -IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDST 695
              + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L  RG  +  
Sbjct: 126 LYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-VRG--EPN 179
Query: 696 TTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
            + I   Y Y APE  + ++  T+  DV+S G VL EL+ G+     D G ++ +     
Sbjct: 180 VSXICSRY-YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKV 238
Query: 755 IKVDTKEGIMEV 766
           +   T+E I E+
Sbjct: 239 LGTPTREQIREM 250

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 20/210 (9%)
Query: 538 GSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G GT  K+ +     +G  VAVK L  Q+ +        L +   +K E++ L   RH +
Sbjct: 20  GVGTFGKVKIGEHQLTGHKVAVKILNRQKIR-------SLDVVGKIKREIQNLKLFRHPH 72
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I+KLY   S+     +V EY+  G L+D + K     +   R ++   +   + Y H  +
Sbjct: 73  IIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEAR-RLFQQILSAVDYCHRHM 131
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              ++HRD+K  N+LLD +   K+ADFG++ ++    G+   T+   G+  Y APE    
Sbjct: 132 ---VVHRDLKPENVLLDAHMNAKIADFGLSNMMS--DGEFLRTS--CGSPNYAAPEVISG 184
Query: 714 S-KATTKCDVYSFGVVLMELITGRKPVEDD 742
              A  + D++S GV+L  L+ G  P +D+
Sbjct: 185 RLYAGPEVDIWSCGVILYALLCGTLPFDDE 214

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGL++ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 112 LLQGLSFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 165
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 52
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 53  SLLKELNHPNIVKLLDVIHTENKLYLVFEHVHQDLKTFMDA--SALTGIPLPLIKSYLFQ 110
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 111 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 164
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 126/295 (42%), Gaps = 47/295 (15%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F   +  E  T+  K+G+G  G V+K ID  + +VVA+K +  +  +    D  Q     
Sbjct: 20  FQSMDPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ----- 74
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               E+  L       + K Y  +       ++ EY+  G+  D L  G   LD      
Sbjct: 75  ----EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG--PLDETQIAT 128
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           I   + +GL YLH       IHRDIK+ N+LL  + + K+ADFG+A  L     K +T  
Sbjct: 129 ILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNT-- 183
Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV 757
              GT  ++APE    S   +K D++S G+  +EL  G  P                   
Sbjct: 184 -FVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP------------------- 223
Query: 758 DTKEGIMEVL-------DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            ++   M+VL          L G++   + + +     C +K P+ RPT  E+++
Sbjct: 224 HSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEA---CLNKEPSFRPTAKELLK 275

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 56
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEY--MPNGNLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E+  M      DA    L  +  P      F 
Sbjct: 57  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLSMDLKKFMDA--SALTGIPLPLIKSYLFQ 114
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 115 LLQGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 168
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 118/289 (40%), Gaps = 36/289 (12%)
Query: 532 NKVGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT---EVETL 586
            K+G G  G V +   D  SG+ V+V         V     D L   + +     EV  +
Sbjct: 24  EKLGDGSFGVVRRGEWDAPSGKTVSVA--------VKCLKPDVLSQPEAMDDFIREVNAM 75
Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            ++ H+N+++LY    +    + V E  P G+L D L K   H    T  + A  VA+G+
Sbjct: 76  HSLDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGM 134
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            YL        IHRD+ + N+LL      K+ DFG+ + L                + + 
Sbjct: 135 GYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWC 191
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           APE   +   +   D + FGV L E+ T G++P             W+ +       I+ 
Sbjct: 192 APESLKTRTFSHASDTWMFGVTLWEMFTYGQEP-------------WIGL---NGSQILH 235
Query: 766 VLDKKLSGSFRDEMI--QVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
            +DK+     R E     +  + ++C +  P  RPT   +   L EA P
Sbjct: 236 KIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 284

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 22/211 (10%)
Query: 538 GSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G GT  K+ +     +G  VAVK L  Q+ +        L +   +K E++ L   RH +
Sbjct: 20  GVGTFGKVKIGEHQLTGHKVAVKILNRQKIR-------SLDVVGKIKREIQNLKLFRHPH 72
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I+KLY   S+     +V EY+  G L+D + K     +   R ++   +   + Y H  +
Sbjct: 73  IIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEAR-RLFQQILSAVDYCHRHM 131
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-QARGGKDSTTTVIAGTYGYLAPEYAY 712
              ++HRD+K  N+LLD +   K+ADFG++ ++      +DS      G+  Y APE   
Sbjct: 132 ---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRDS-----CGSPNYAAPEVIS 183
Query: 713 SS-KATTKCDVYSFGVVLMELITGRKPVEDD 742
               A  + D++S GV+L  L+ G  P +D+
Sbjct: 184 GRLYAGPEVDIWSCGVILYALLCGTLPFDDE 214

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 54
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEY--MPNGNLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E+  M      DA    L  +  P      F 
Sbjct: 55  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLSMDLKKFMDA--SALTGIPLPLIKSYLFQ 112
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 113 LLQGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 166
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 117/287 (40%), Gaps = 32/287 (11%)
Query: 532 NKVGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDT-DQLQLDKGLKTEVETLGN 588
            K+G G  G V +   D  SG+ V+V        K    D   Q +       EV  + +
Sbjct: 18  EKLGDGSFGVVRRGEWDAPSGKTVSVA------VKCLKPDVLSQPEAMDDFIREVNAMHS 71
Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
           + H+N+++LY    +    + V E  P G+L D L K   H    T  + A  VA+G+ Y
Sbjct: 72  LDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGY 130
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           L        IHRD+ + N+LL      K+ DFG+ + L                + + AP
Sbjct: 131 LES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAP 187
Query: 709 EYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           E   +   +   D + FGV L E+ T G++P             W+ +       I+  +
Sbjct: 188 ESLKTRTFSHASDTWMFGVTLWEMFTYGQEP-------------WIGL---NGSQILHKI 231
Query: 768 DKKLSGSFRDEMI--QVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
           DK+     R E     +  + ++C +  P  RPT   +   L EA P
Sbjct: 232 DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 278

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 30/257 (11%)
Query: 559 WSQRTKVSASDTDQLQL-DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMP 615
           W  + KV+     +  + ++    E E +  + H  +V+LY  C   +  C  LV+E+M 
Sbjct: 26  WLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC--LVFEFME 83
Query: 616 NGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY 673
           +G L D L   +GL   +  T   +   V +G+AYL       +IHRD+ + N L+  N 
Sbjct: 84  HGCLSDYLRTQRGLFAAE--TLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQ 138
Query: 674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELI 733
             KV+DFG+ + +       ST T     +   +PE    S+ ++K DV+SFGV++ E+ 
Sbjct: 139 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA--SPEVFSFSRYSSKSDVWSFGVLMWEVF 196
Query: 734 T-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSK 792
           + G+ P E+    N  ++       D   G   +   +L+ +       V +I   C  +
Sbjct: 197 SEGKIPYENR--SNSEVVE------DISTGF-RLYKPRLAST------HVYQIMNHCWKE 241
Query: 793 SPATRPTMNEVVQLLAE 809
            P  RP  + +++ LAE
Sbjct: 242 RPEDRPAFSRLLRQLAE 258

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 112 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 165
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 112 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 165
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 112 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 165
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 52
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 53  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 110
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 111 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 164
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 6   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 57
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 58  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 115
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 116 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 169
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 170 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 205

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 30/257 (11%)
Query: 559 WSQRTKVSASDTDQLQL-DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMP 615
           W  + KV+     +  + ++    E E +  + H  +V+LY  C   +  C  LV+E+M 
Sbjct: 28  WLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC--LVFEFME 85
Query: 616 NGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY 673
           +G L D L   +GL   +  T   +   V +G+AYL       +IHRD+ + N L+  N 
Sbjct: 86  HGCLSDYLRTQRGLFAAE--TLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQ 140
Query: 674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELI 733
             KV+DFG+ + +       ST T     +   +PE    S+ ++K DV+SFGV++ E+ 
Sbjct: 141 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA--SPEVFSFSRYSSKSDVWSFGVLMWEVF 198
Query: 734 T-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSK 792
           + G+ P E+    N  ++       D   G   +   +L+ +       V +I   C  +
Sbjct: 199 SEGKIPYENR--SNSEVVE------DISTGF-RLYKPRLAST------HVYQIMNHCWKE 243
Query: 793 SPATRPTMNEVVQLLAE 809
            P  RP  + +++ LAE
Sbjct: 244 RPEDRPAFSRLLRQLAE 260

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 56
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 57  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 114
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 115 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 168
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 4   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 55
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 56  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 113
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 114 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 167
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 168 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+ K+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 112 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 165
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+ K+          DT+   +      E+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKI--------RLDTETEGVPSTAIREI 52
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 53  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 110
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T T    
Sbjct: 111 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVV 164
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 54
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 55  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 112
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 113 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 166
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 52
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 53  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 110
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 111 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 164
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 56
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 57  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKTFMDA--SALTGIPLPLIKSYLFQ 114
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 115 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 168
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 4   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 55
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 56  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 113
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 114 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 167
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 168 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 11/207 (5%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +GQG  G V+ +   SG     ++L++   KV    T +++     K E + L  + H  
Sbjct: 32  LGQGSFGKVFLVKKISGS--DARQLYAM--KVLKKATLKVRDRVRTKMERDILVEVNHPF 87
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+  F +     L+ +++  G+L+  L K ++     T   + F +A+    L H  
Sbjct: 88  IVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMF----TEEDVKFYLAELALALDHLH 143
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              II+RD+K  NILLD     K+ DFG++K        +       GT  Y+APE    
Sbjct: 144 SLGIIYRDLKPENILLDEEGHIKLTDFGLSK---ESIDHEKKAYSFCGTVEYMAPEVVNR 200
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVE 740
              T   D +SFGV++ E++TG  P +
Sbjct: 201 RGHTQSADWWSFGVLMFEMLTGTLPFQ 227

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 56
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 57  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 114
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 115 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 168
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 53
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 111
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 112 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 165
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 4   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 55
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 56  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 113
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 114 LLQGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 167
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 168 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 54
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 55  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 112
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 113 LLQGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 166
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 30/257 (11%)
Query: 559 WSQRTKVSASDTDQLQL-DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMP 615
           W  + KV+     +  + ++    E E +  + H  +V+LY  C   +  C  LV+E+M 
Sbjct: 31  WLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC--LVFEFME 88
Query: 616 NGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY 673
           +G L D L   +GL   +  T   +   V +G+AYL       +IHRD+ + N L+  N 
Sbjct: 89  HGCLSDYLRTQRGLFAAE--TLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQ 143
Query: 674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELI 733
             KV+DFG+ + +       ST T     +   +PE    S+ ++K DV+SFGV++ E+ 
Sbjct: 144 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA--SPEVFSFSRYSSKSDVWSFGVLMWEVF 201
Query: 734 T-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSK 792
           + G+ P E+    N  ++       D   G   +   +L+ +       V +I   C  +
Sbjct: 202 SEGKIPYENR--SNSEVVE------DISTGF-RLYKPRLAST------HVYQIMNHCWRE 246
Query: 793 SPATRPTMNEVVQLLAE 809
            P  RP  + +++ LAE
Sbjct: 247 RPEDRPAFSRLLRQLAE 263

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 11/207 (5%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +GQG  G V+ +   SG     ++L++   KV    T +++     K E + L  + H  
Sbjct: 33  LGQGSFGKVFLVKKISGS--DARQLYA--MKVLKKATLKVRDRVRTKMERDILVEVNHPF 88
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+  F +     L+ +++  G+L+  L K ++     T   + F +A+    L H  
Sbjct: 89  IVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMF----TEEDVKFYLAELALALDHLH 144
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              II+RD+K  NILLD     K+ DFG++K        +       GT  Y+APE    
Sbjct: 145 SLGIIYRDLKPENILLDEEGHIKLTDFGLSK---ESIDHEKKAYSFCGTVEYMAPEVVNR 201
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVE 740
              T   D +SFGV++ E++TG  P +
Sbjct: 202 RGHTQSADWWSFGVLMFEMLTGTLPFQ 228

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 31/221 (14%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+G G  G V+    N    VAVK +      V A              E   
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEA-----------FLAEANV 236
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG-- 641
           +  ++H  +VKL+   +   +Y   ++ E+M  G+L D L K       P    I F   
Sbjct: 237 MKTLQHDKLVKLHAVVTKEPIY---IITEFMAKGSLLDFL-KSDEGSKQPLPKLIDFSAQ 292
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A+G+A++        IHRD+++ NIL+  +   K+ADFG+A+V++     D+  T   G
Sbjct: 293 IAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIE-----DNEYTAREG 344
Query: 702 T---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
                 + APE       T K DV+SFG++LME++T GR P
Sbjct: 345 AKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIP 385

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 11/207 (5%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +GQG  G V+ +   SG     ++L++   KV    T +++     K E + L  + H  
Sbjct: 32  LGQGSFGKVFLVKKISGS--DARQLYA--MKVLKKATLKVRDRVRTKMERDILVEVNHPF 87
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+  F +     L+ +++  G+L+  L K ++     T   + F +A+    L H  
Sbjct: 88  IVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMF----TEEDVKFYLAELALALDHLH 143
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              II+RD+K  NILLD     K+ DFG++K        +       GT  Y+APE    
Sbjct: 144 SLGIIYRDLKPENILLDEEGHIKLTDFGLSK---ESIDHEKKAYSFCGTVEYMAPEVVNR 200
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVE 740
              T   D +SFGV++ E++TG  P +
Sbjct: 201 RGHTQSADWWSFGVLMFEMLTGTLPFQ 227

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 98/218 (44%), Gaps = 45/218 (20%)
Query: 535 GQGGSGTVYKIDL---NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           G  G  ++Y  D     +GE+VAVK L     K  A      Q   G K E++ L  + H
Sbjct: 42  GHFGKVSLYCYDPTNDGTGEMVAVKAL-----KADAGP----QHRSGWKQEIDILRTLYH 92
Query: 592 KNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG-------- 641
           ++I+K    C  +      LV EY+P G+L D L           RH I           
Sbjct: 93  EHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYL----------PRHSIGLAQLLLFAQQ 142
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-----QARGGKDSTT 696
           + +G+AYLH       IHRD+ + N+LLD +   K+ DFG+AK +       R  +D  +
Sbjct: 143 ICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVREDGDS 199
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
            V      + APE     K     DV+SFGV L EL+T
Sbjct: 200 PVF-----WYAPECLKEYKFYYASDVWSFGVTLYELLT 232

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 54
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 55  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SALTGIPLPLIKSYLFQ 112
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 113 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 166
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 19/211 (9%)
Query: 534 VGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +GQG  G V+ +      +SG + A+K L     KV     D+++     K E + L ++
Sbjct: 36  LGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVR----DRVRT----KMERDILADV 87
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
            H  +VKL+  F +     L+ +++  G+L+  L K ++  +   +  +A  +A GL +L
Sbjct: 88  NHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLA-ELALGLDHL 146
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H      II+RD+K  NILLD     K+ DFG++K       K  +     GT  Y+APE
Sbjct: 147 HS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYS---FCGTVEYMAPE 200
Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
                  +   D +S+GV++ E++TG  P +
Sbjct: 201 VVNRQGHSHSADWWSYGVLMFEMLTGSLPFQ 231

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 17/209 (8%)
Query: 534 VGQGGSGTVYKI----DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+GG G V+++      N+G++ A+K L       +A DT         K E   L  +
Sbjct: 25  LGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHT------KAERNILEEV 78
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           +H  IV L   F +     L+ EY+  G L+  L +  + ++      +A  ++  L +L
Sbjct: 79  KHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLA-EISMALGHL 137
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H      II+RD+K  NI+L+     K+ DFG+ K     G   + T    GT  Y+APE
Sbjct: 138 HQ---KGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDG---TVTHTFCGTIEYMAPE 191
Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKP 738
               S      D +S G ++ +++TG  P
Sbjct: 192 ILMRSGHNRAVDWWSLGALMYDMLTGAPP 220

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 17/209 (8%)
Query: 534 VGQGGSGTVYKI----DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+GG G V+++      N+G++ A+K L       +A DT         K E   L  +
Sbjct: 25  LGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHT------KAERNILEEV 78
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           +H  IV L   F +     L+ EY+  G L+  L +  + ++      +A  ++  L +L
Sbjct: 79  KHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLA-EISMALGHL 137
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H      II+RD+K  NI+L+     K+ DFG+ K     G   + T    GT  Y+APE
Sbjct: 138 HQ---KGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDG---TVTHXFCGTIEYMAPE 191
Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKP 738
               S      D +S G ++ +++TG  P
Sbjct: 192 ILMRSGHNRAVDWWSLGALMYDMLTGAPP 220

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 117/261 (44%), Gaps = 39/261 (14%)
Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K ++G GG G V + I  ++GE VA+K+    R ++S  + ++  L      E++ +  +
Sbjct: 20  KERLGTGGFGYVLRWIHQDTGEQVAIKQC---RQELSPKNRERWCL------EIQIMKKL 70
Query: 590 RHKNIVKLYCYFSSLY------CNLLVYEYMPNGNLWDALHK-----GLVHLDWPTRHKI 638
            H N+V        L         LL  EY   G+L   L++     GL   + P R  +
Sbjct: 71  NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLK--EGPIRTLL 128
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDST 695
           +  ++  L YLH    + IIHRD+K  NI+L    Q    K+ D G AK L     +   
Sbjct: 129 S-DISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL----DQGEL 180
Query: 696 TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI 755
            T   GT  YLAPE     K T   D +SFG +  E ITG +P    F  N   + W   
Sbjct: 181 CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRP----FLPNWQPVQWHG- 235
Query: 756 KVDTKEGIMEVLDKKLSGSFR 776
           KV  K     V+   L+G+ +
Sbjct: 236 KVREKSNEHIVVYDDLTGAVK 256

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 117/261 (44%), Gaps = 39/261 (14%)
Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K ++G GG G V + I  ++GE VA+K+    R ++S  + ++  L      E++ +  +
Sbjct: 19  KERLGTGGFGYVLRWIHQDTGEQVAIKQC---RQELSPKNRERWCL------EIQIMKKL 69
Query: 590 RHKNIVKLYCYFSSLY------CNLLVYEYMPNGNLWDALHK-----GLVHLDWPTRHKI 638
            H N+V        L         LL  EY   G+L   L++     GL   + P R  +
Sbjct: 70  NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLK--EGPIRTLL 127
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDST 695
           +  ++  L YLH    + IIHRD+K  NI+L    Q    K+ D G AK L     +   
Sbjct: 128 S-DISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL----DQGEL 179
Query: 696 TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI 755
            T   GT  YLAPE     K T   D +SFG +  E ITG +P    F  N   + W   
Sbjct: 180 CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRP----FLPNWQPVQWHG- 234
Query: 756 KVDTKEGIMEVLDKKLSGSFR 776
           KV  K     V+   L+G+ +
Sbjct: 235 KVREKSNEHIVVYDDLTGAVK 255

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 38/261 (14%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE 612
           VA+K L        A  TD+ + D    +E   +G   H NI+ L    +     +++ E
Sbjct: 60  VAIKTL-------KAGYTDKQRRD--FLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITE 110
Query: 613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN 672
           YM NG+L   L K            +  G+  G+ YL        +HRD+ + NIL++ N
Sbjct: 111 YMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSD---MSAVHRDLAARNILVNSN 167
Query: 673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
              KV+DFG+++VL+       TT        + APE     K T+  DV+S+G+V+ E+
Sbjct: 168 LVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEV 227
Query: 733 IT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR-----DEMIQVLRIA 786
           ++ G +P            YW     D  + I E         +R     D  I + ++ 
Sbjct: 228 MSYGERP------------YWDMSNQDVIKAIEE--------GYRLPPPMDCPIALHQLM 267
Query: 787 IRCTSKSPATRPTMNEVVQLL 807
           + C  K  + RP   ++V +L
Sbjct: 268 LDCWQKERSDRPKFGQIVNML 288

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 24/221 (10%)
Query: 520 DQREILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D RE L       K+G+G +G V    + ++G+ VAVKK+          D  + Q  + 
Sbjct: 42  DPREYLANFI---KIGEGSTGIVCIATEKHTGKQVAVKKM----------DLRKQQRREL 88
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHK 637
           L  EV  + +  H N+V +Y  +       +V E++  G L D + H  +      T   
Sbjct: 89  LFNEVVIMRDYHHDNVVDMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAT--- 145
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           +   V + L+YLH+     +IHRDIKS +ILL  + + K++DFG    +     K     
Sbjct: 146 VCLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKX-- 200
Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            + GT  ++APE        T+ D++S G++++E+I G  P
Sbjct: 201 -LVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPP 240

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G +G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 19  ERLGAGQAGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 67
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 68  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 124
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 125 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DAEXTAREGAKFPIKW 176
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 228
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 229 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 266

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 122/283 (43%), Gaps = 40/283 (14%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +++G G  G V+K+      +V  +KL     K +  +         +  E++ L     
Sbjct: 12  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQ--------IIRELQVLHECNS 63
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             IV  Y  F S     +  E+M  G+L D + K    +      K++  V +GL YL  
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQILGKVSIAVIKGLTYLRE 122
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I+HRD+K +NIL++   + K+ DFG++  L      DS      GT  Y++PE  
Sbjct: 123 K--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMSPERL 175
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE--GIMEVLD- 768
             +  + + D++S G+ L+E+  GR P+                K D++    I E+LD 
Sbjct: 176 QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP-----------DAKEDSRPPMAIFELLDY 224
Query: 769 -------KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
                  K  SG F  E    +    +C  K+PA R  + +++
Sbjct: 225 IVNEPPPKLPSGVFSLEFQDFVN---KCLIKNPAERADLKQLM 264

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 124/288 (43%), Gaps = 47/288 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E  T+  K+G+G  G V+K ID  + +VVA+K +  +  +    D  Q         E+ 
Sbjct: 7   ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ---------EIT 57
Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            L       + K Y  +       ++ EY+  G+  D L  G   LD      I   + +
Sbjct: 58  VLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILK 115
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH       IHRDIK+ N+LL  + + K+ADFG+A  L     K +T     GT  
Sbjct: 116 GLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNT---FVGTPF 169
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE    S   +K D++S G+  +EL  G  P                    ++   M
Sbjct: 170 WMAPEVIKQSAYDSKADIWSLGITAIELARGEPP-------------------HSELHPM 210
Query: 765 EVL-------DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           +VL          L G++   + + +     C +K P+ RPT  E+++
Sbjct: 211 KVLFLIPKNNPPTLEGNYSKPLKEFVEA---CLNKEPSFRPTAKELLK 255

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E   +  K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREI 56
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPTRHKIAFG 641
             L  + H NIVKL     +     LV+E++        DA    L  +  P      F 
Sbjct: 57  SLLKELNHPNIVKLLDVIHTENKLYLVFEHVDQDLKKFMDA--SALTGIPLPLIKSYLFQ 114
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + QGLA+ H      ++HRD+K  N+L++     K+ADFG+A+   A G    T      
Sbjct: 115 LLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVV 168
Query: 702 TYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGR 736
           T  Y APE     K  +T  D++S G +  E++T R
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 121/272 (44%), Gaps = 31/272 (11%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG    ++I D ++ EV A  K+  +   +     +++ +      E+    ++ H+
Sbjct: 25  LGKGGFAKCFEISDADTKEVFA-GKIVPKSLLLKPHQREKMSM------EISIHRSLAHQ 77
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           ++V  + +F       +V E     +L + LHK    L  P        +  G  YLH  
Sbjct: 78  HVVGFHGFFEDNDFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN 136
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRD+K  N+ L+ + + K+ DFG+A  ++  G +  T   + GT  Y+APE   
Sbjct: 137 R---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKT---LCGTPNYIAPEVLS 190
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
               + + DV+S G ++  L+ G+ P E       + +    +++   E  +      ++
Sbjct: 191 KKGHSFEVDVWSIGCIMYTLLVGKPPFET------SCLKETYLRIKKNEYSIPKHINPVA 244
Query: 773 GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
            S   +M+Q            P  RPT+NE++
Sbjct: 245 ASLIQKMLQT----------DPTARPTINELL 266

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 121/285 (42%), Gaps = 30/285 (10%)
Query: 533 KVGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K+G G  G V +   D  SG+ V+V     +   +S  +     +D  ++ EV  + ++ 
Sbjct: 15  KLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEA----MDDFIR-EVNAMHSLD 69
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H+N+++LY    +    + V E  P G+L D L K   H    T  + A  VA+G+ YL 
Sbjct: 70  HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE 128
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                  IHRD+ + N+LL      K+ DFG+ + L                + + APE 
Sbjct: 129 S---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPFAWCAPES 185
Query: 711 AYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
             +   +   D + FGV L E+ T G++P             W+ +       I+  +DK
Sbjct: 186 LKTRTFSHASDTWMFGVTLWEMFTYGQEP-------------WIGL---NGSQILHKIDK 229
Query: 770 KLSGSFRDEMI--QVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
           +     R E     +  + ++C +  P  RPT   +   L EA P
Sbjct: 230 EGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 274

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 121/272 (44%), Gaps = 31/272 (11%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG    ++I D ++ EV A  K+  +   +     +++ +      E+    ++ H+
Sbjct: 25  LGKGGFAKCFEISDADTKEVFA-GKIVPKSLLLKPHQREKMSM------EISIHRSLAHQ 77
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           ++V  + +F       +V E     +L + LHK    L  P        +  G  YLH  
Sbjct: 78  HVVGFHGFFEDNDFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN 136
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRD+K  N+ L+ + + K+ DFG+A  ++  G +  T   + GT  Y+APE   
Sbjct: 137 R---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKT---LCGTPNYIAPEVLS 190
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
               + + DV+S G ++  L+ G+ P E       + +    +++   E  +      ++
Sbjct: 191 KKGHSFEVDVWSIGCIMYTLLVGKPPFET------SCLKETYLRIKKNEYSIPKHINPVA 244
Query: 773 GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
            S   +M+Q            P  RPT+NE++
Sbjct: 245 ASLIQKMLQT----------DPTARPTINELL 266

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 38/261 (14%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE 612
           VA+K L        A  TD+ + D    +E   +G   H NI+ L    +     +++ E
Sbjct: 45  VAIKTL-------KAGYTDKQRRD--FLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITE 95
Query: 613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN 672
           YM NG+L   L K            +  G+  G+ YL        +HRD+ + NIL++ N
Sbjct: 96  YMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSD---MSYVHRDLAARNILVNSN 152
Query: 673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
              KV+DFG+++VL+       TT        + APE     K T+  DV+S+G+V+ E+
Sbjct: 153 LVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEV 212
Query: 733 IT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR-----DEMIQVLRIA 786
           ++ G +P            YW     D  + I E         +R     D  I + ++ 
Sbjct: 213 MSYGERP------------YWDMSNQDVIKAIEE--------GYRLPPPMDCPIALHQLM 252
Query: 787 IRCTSKSPATRPTMNEVVQLL 807
           + C  K  + RP   ++V +L
Sbjct: 253 LDCWQKERSDRPKFGQIVNML 273

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 121/272 (44%), Gaps = 31/272 (11%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG    ++I D ++ EV A  K+  +   +     +++ +      E+    ++ H+
Sbjct: 29  LGKGGFAKCFEISDADTKEVFA-GKIVPKSLLLKPHQREKMSM------EISIHRSLAHQ 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           ++V  + +F       +V E     +L + LHK    L  P        +  G  YLH  
Sbjct: 82  HVVGFHGFFEDNDFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN 140
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRD+K  N+ L+ + + K+ DFG+A  ++  G +  T   + GT  Y+APE   
Sbjct: 141 R---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKT---LCGTPNYIAPEVLS 194
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
               + + DV+S G ++  L+ G+ P E       + +    +++   E  +      ++
Sbjct: 195 KKGHSFEVDVWSIGCIMYTLLVGKPPFET------SCLKETYLRIKKNEYSIPKHINPVA 248
Query: 773 GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
            S   +M+Q            P  RPT+NE++
Sbjct: 249 ASLIQKMLQT----------DPTARPTINELL 270

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+A+VL+       TT     
Sbjct: 156 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKI 212
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 260
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 261 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 38/261 (14%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE 612
           VA+K L        A  TD+ + D    +E   +G   H NI+ L    +     +++ E
Sbjct: 39  VAIKTL-------KAGYTDKQRRD--FLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITE 89
Query: 613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN 672
           YM NG+L   L K            +  G+  G+ YL        +HRD+ + NIL++ N
Sbjct: 90  YMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSD---MSYVHRDLAARNILVNSN 146
Query: 673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
              KV+DFG+++VL+       TT        + APE     K T+  DV+S+G+V+ E+
Sbjct: 147 LVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEV 206
Query: 733 IT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR-----DEMIQVLRIA 786
           ++ G +P            YW     D  + I E         +R     D  I + ++ 
Sbjct: 207 MSYGERP------------YWDMSNQDVIKAIEE--------GYRLPPPMDCPIALHQLM 246
Query: 787 IRCTSKSPATRPTMNEVVQLL 807
           + C  K  + RP   ++V +L
Sbjct: 247 LDCWQKERSDRPKFGQIVNML 267

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 136/307 (44%), Gaps = 65/307 (21%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           S D+ E+    +T K+K+G G  G VY         V V K +S    V     D ++++
Sbjct: 23  SMDKWEMERTDITMKHKLGGGQYGEVY---------VGVWKKYSLTVAVKTLKEDTMEVE 73
Query: 577 KGLKTEVETLGNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHK-------GL 627
           + LK E   +  I+H N+V+L   C     +   +V EYMP GNL D L +        +
Sbjct: 74  EFLK-EAAVMKEIKHPNLVQLLGVCTLEPPF--YIVTEYMPYGNLLDYLRECNREEVTAV 130
Query: 628 VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ 687
           V L       +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++ 
Sbjct: 131 VLL------YMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHVVKVADFGLSRLMT 181
Query: 688 ARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF 743
                  T T  AG      + APE    +  + K DV++FGV+L E+ T G  P     
Sbjct: 182 G-----DTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYP--- 233
Query: 744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQ-----VLRIAIRCTSKSPATRP 798
           G + + +Y             ++L+K     +R E  +     V  +   C   SPA RP
Sbjct: 234 GIDLSQVY-------------DLLEK----GYRMEQPEGCPPKVYELMRACWKWSPADRP 276
Query: 799 TMNEVVQ 805
           +  E  Q
Sbjct: 277 SFAETHQ 283

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 121/272 (44%), Gaps = 31/272 (11%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG    ++I D ++ EV A  K+  +   +     +++ +      E+    ++ H+
Sbjct: 47  LGKGGFAKCFEISDADTKEVFA-GKIVPKSLLLKPHQREKMSM------EISIHRSLAHQ 99
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           ++V  + +F       +V E     +L + LHK    L  P        +  G  YLH  
Sbjct: 100 HVVGFHGFFEDNDFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN 158
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRD+K  N+ L+ + + K+ DFG+A  ++  G +     V+ GT  Y+APE   
Sbjct: 159 R---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK---VLCGTPNYIAPEVLS 212
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
               + + DV+S G ++  L+ G+ P E       + +    +++   E  +      ++
Sbjct: 213 KKGHSFEVDVWSIGCIMYTLLVGKPPFET------SCLKETYLRIKKNEYSIPKHINPVA 266
Query: 773 GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
            S   +M+Q            P  RPT+NE++
Sbjct: 267 ASLIQKMLQT----------DPTARPTINELL 288

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 121/272 (44%), Gaps = 31/272 (11%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG    ++I D ++ EV A  K+  +   +     +++ +      E+    ++ H+
Sbjct: 49  LGKGGFAKCFEISDADTKEVFA-GKIVPKSLLLKPHQREKMSM------EISIHRSLAHQ 101
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           ++V  + +F       +V E     +L + LHK    L  P        +  G  YLH  
Sbjct: 102 HVVGFHGFFEDNDFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN 160
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRD+K  N+ L+ + + K+ DFG+A  ++  G +     V+ GT  Y+APE   
Sbjct: 161 R---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK---VLCGTPNYIAPEVLS 214
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
               + + DV+S G ++  L+ G+ P E       + +    +++   E  +      ++
Sbjct: 215 KKGHSFEVDVWSIGCIMYTLLVGKPPFET------SCLKETYLRIKKNEYSIPKHINPVA 268
Query: 773 GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
            S   +M+Q            P  RPT+NE++
Sbjct: 269 ASLIQKMLQT----------DPTARPTINELL 290

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 37/218 (16%)
Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G G   TVYK ++  +G  VA+K++          D+++      ++ E+  +  ++H
Sbjct: 12  KLGNGTYATVYKGLNKTTGVYVALKEV--------KLDSEEGTPSTAIR-EISLMKELKH 62
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPN-----------GNLWDALHKGLV-HLDWPTRHKIA 639
           +NIV+LY    +     LV+E+M N           GN    L   LV +  W       
Sbjct: 63  ENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQ------ 116
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
             + QGLA+ H    + I+HRD+K  N+L++   Q K+ DFG+A+   A G   +T +  
Sbjct: 117 --LLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGDFGLAR---AFGIPVNTFSSE 168
Query: 700 AGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
             T  Y AP+    S+  +T  D++S G +L E+ITG+
Sbjct: 169 VVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGK 206

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 30/256 (11%)
Query: 559 WSQRTKVSASDTDQLQL-DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMP 615
           W  + KV+     +  + ++    E E +  + H  +V+LY  C   +  C  LV+E+M 
Sbjct: 28  WLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC--LVFEFME 85
Query: 616 NGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY 673
           +G L D L   +GL   +  T   +   V +G+AYL     + +IHRD+ + N L+  N 
Sbjct: 86  HGCLSDYLRTQRGLFAAE--TLLGMCLDVCEGMAYLEE---ASVIHRDLAARNCLVGENQ 140
Query: 674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELI 733
             KV+DFG+ + +       ST T     +   +PE    S+ ++K DV+SFGV++ E+ 
Sbjct: 141 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA--SPEVFSFSRYSSKSDVWSFGVLMWEVF 198
Query: 734 T-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSK 792
           + G+ P E+    N  ++       D   G   +   +L+ +       V +I   C  +
Sbjct: 199 SEGKIPYENR--SNSEVVE------DISTGF-RLYKPRLAST------HVYQIMNHCWKE 243
Query: 793 SPATRPTMNEVVQLLA 808
            P  RP  + +++ LA
Sbjct: 244 RPEDRPAFSRLLRQLA 259

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 19/227 (8%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI+ L    +     ++V EYM NG+L   L K            +  G
Sbjct: 73  EASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRG 132
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           ++ G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 133 ISAGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 189
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + APE     K T+  DV+S+G+V+ E+++ G +P            YW     D  
Sbjct: 190 PIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVSYGERP------------YWEMTNQDVI 237
Query: 761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E    +L     D    + ++ + C  K   +RP  +E+V +L
Sbjct: 238 KAVEE--GYRLPSPM-DCPAALYQLMLDCWQKERNSRPKFDEIVNML 281

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 156 IASGMKYLSD---MGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 260
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 261 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 121/285 (42%), Gaps = 30/285 (10%)
Query: 533 KVGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K+G G  G V +   D  SG+ V+V     +   +S  +     +D  ++ EV  + ++ 
Sbjct: 15  KLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEA----MDDFIR-EVNAMHSLD 69
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H+N+++LY    +    + V E  P G+L D L K   H    T  + A  VA+G+ YL 
Sbjct: 70  HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE 128
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                  IHRD+ + N+LL      K+ DFG+ + L                + + APE 
Sbjct: 129 S---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPES 185
Query: 711 AYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
             +   +   D + FGV L E+ T G++P             W+ +       I+  +DK
Sbjct: 186 LKTRTFSHASDTWMFGVTLWEMFTYGQEP-------------WIGL---NGSQILHKIDK 229
Query: 770 KLSGSFRDEMI--QVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
           +     R E     +  + ++C +  P  RPT   +   L EA P
Sbjct: 230 EGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 274

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 21  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 69
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 70  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 126
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 127 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEXTAREGAKFPIKW 178
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 179 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 230
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 231 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 268

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 122/272 (44%), Gaps = 31/272 (11%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG    ++I D ++ EV A  K+  +   +     +++ +      E+    ++ H+
Sbjct: 23  LGKGGFAKCFEISDADTKEVFA-GKIVPKSLLLKPHQREKMSM------EISIHRSLAHQ 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           ++V  + +F       +V E     +L + LHK    L  P        +  G  YLH  
Sbjct: 76  HVVGFHGFFEDNDFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHR- 133
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
             + +IHRD+K  N+ L+ + + K+ DFG+A  ++  G +     V+ GT  Y+APE   
Sbjct: 134 --NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK---VLCGTPNYIAPEVLS 188
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
               + + DV+S G ++  L+ G+ P E       + +    +++   E  +      ++
Sbjct: 189 KKGHSFEVDVWSIGCIMYTLLVGKPPFET------SCLKETYLRIKKNEYSIPKHINPVA 242
Query: 773 GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
            S   +M+Q            P  RPT+NE++
Sbjct: 243 ASLIQKMLQT----------DPTARPTINELL 264

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 28  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 76
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 77  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 133
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 134 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEXTAREGAKFPIKW 185
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 186 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 237
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 238 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 275

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 31/217 (14%)
Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+G+G  G+VYK I   +G++VA+K++          ++D  ++ K    E+  +    
Sbjct: 35  EKLGEGSYGSVYKAIHKETGQIVAIKQV--------PVESDLQEIIK----EISIMQQCD 82
Query: 591 HKNIVKLYCYFSSLYCN---LLVYEYMPNGNLWDAL---HKGLVHLDWPTRHKIAFGVAQ 644
             ++VK   Y+ S + N    +V EY   G++ D +   +K L   +  T   I     +
Sbjct: 83  SPHVVK---YYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIAT---ILQSTLK 136
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH       IHRDIK+ NILL+     K+ADFG+A  L     K +    + GT  
Sbjct: 137 GLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMAKRNX---VIGTPF 190
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           ++APE           D++S G+  +E+  G+ P  D
Sbjct: 191 WMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYAD 227

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 36/287 (12%)
Query: 532 NKVGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT---EVETL 586
            K+G G  G V +   D  SG+ V+V         V     D L   + +     EV  +
Sbjct: 18  EKLGDGSFGVVRRGEWDAPSGKTVSVA--------VKCLKPDVLSQPEAMDDFIREVNAM 69
Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            ++ H+N+++LY    +    + V E  P G+L D L K   H    T  + A  VA+G+
Sbjct: 70  HSLDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGM 128
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            YL        IHRD+ + N+LL      K+ DFG+ + L                + + 
Sbjct: 129 GYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWC 185
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           APE   +   +   D + FGV L E+ T G++P             W+ +       I+ 
Sbjct: 186 APESLKTRTFSHASDTWMFGVTLWEMFTYGQEP-------------WIGL---NGSQILH 229
Query: 766 VLDKKLSGSFRDEMI--QVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
            +DK+     R E     +  + ++C +  P  RPT   +   L EA
Sbjct: 230 KIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 276

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 20  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 68
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 69  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 125
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 126 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEXTAREGAKFPIKW 177
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 178 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 229
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 230 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 267

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 33/281 (11%)
Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E  T+  ++G+G  G V+K ID  + +VVA+K +  +  +    D  Q         E+ 
Sbjct: 23  ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQ---------EIT 73
Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            L       + K Y  +       ++ EY+  G+  D L  G    D      +   + +
Sbjct: 74  VLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAG--PFDEFQIATMLKEILK 131
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH       IHRDIK+ N+LL      K+ADFG+A  L     K +T     GT  
Sbjct: 132 GLDYLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNT---FVGTPF 185
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE    S   +K D++S G+  +EL  G  P  D        ++ + +     +   
Sbjct: 186 WMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSD--------MHPMRVLFLIPKNNP 237
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             L    + SF+ E I        C +K P+ RPT  E+++
Sbjct: 238 PTLVGDFTKSFK-EFIDA------CLNKDPSFRPTAKELLK 271

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 28/214 (13%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N+   VAVK L      V A              E   +  ++H
Sbjct: 19  KRLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA-----------FLEEANLMKTLQH 67
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAY 648
             +V+LY   +      ++ EYM  G+L D L     G V L  P     +  +A+G+AY
Sbjct: 68  DKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLL--PKLIDFSAQIAEGMAY 125
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ N+L+  +   K+ADFG+A+V++     D+  T   G      +
Sbjct: 126 IER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIE-----DNEYTAREGAKFPIKW 177
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
            APE       T K DV+SFG++L E++T G+ P
Sbjct: 178 TAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIP 211

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 27  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 75
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 76  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 132
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 133 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEXTAREGAKFPIKW 184
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 185 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 236
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 237 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 274

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V+  +   + +  A+K L  ++  V   D  +  +   ++  V +L    H 
Sbjct: 25  LGKGSFGKVFLAEFKKTNQFFAIKAL--KKDVVLMDDDVECTM---VEKRVLSLA-WEHP 78
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVAQGLAYLHH 651
            +  ++C F +      V EY+  G+L    H    H  D       A  +  GL +LH 
Sbjct: 79  FLTHMFCTFQTKENLFFVMEYLNGGDL--MYHIQSCHKFDLSRATFYAAEIILGLQFLHS 136
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I++RD+K  NILLD +   K+ADFG+ K        D+ T    GT  Y+APE  
Sbjct: 137 ---KGIVYRDLKLDNILLDKDGHIKIADFGMCK---ENMLGDAKTNXFCGTPDYIAPEIL 190
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKP 738
              K     D +SFGV+L E++ G+ P
Sbjct: 191 LGQKYNHSVDWWSFGVLLYEMLIGQSP 217

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 67
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 68  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 124
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 125 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEXTAREGAKFPIKW 176
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 228
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 229 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 266

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G +G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAAGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 119/257 (46%), Gaps = 30/257 (11%)
Query: 559 WSQRTKVSASDTDQLQL-DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMP 615
           W  + KV+     +  + ++    E E +  + H  +V+LY  C   +  C  LV E+M 
Sbjct: 29  WLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC--LVTEFME 86
Query: 616 NGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY 673
           +G L D L   +GL   +  T   +   V +G+AYL       +IHRD+ + N L+  N 
Sbjct: 87  HGCLSDYLRTQRGLFAAE--TLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQ 141
Query: 674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELI 733
             KV+DFG+ + +       ST T     +   +PE    S+ ++K DV+SFGV++ E+ 
Sbjct: 142 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA--SPEVFSFSRYSSKSDVWSFGVLMWEVF 199
Query: 734 T-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSK 792
           + G+ P E+    N  ++       D   G   +   +L+ +       V +I   C  +
Sbjct: 200 SEGKIPYENR--SNSEVVE------DISTGF-RLYKPRLAST------HVYQIMNHCWRE 244
Query: 793 SPATRPTMNEVVQLLAE 809
            P  RP  + +++ LAE
Sbjct: 245 RPEDRPAFSRLLRQLAE 261

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 33/281 (11%)
Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E  T+ +++G+G  G VYK ID ++ EVVA+K +  +  +    D  Q         E+ 
Sbjct: 19  ELFTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQ---------EIT 69
Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            L       I + +  +       ++ EY+  G+  D L  G +   +     I   + +
Sbjct: 70  VLSQCDSPYITRYFGSYLKSTKLWIIMEYLGGGSALDLLKPGPLEETYIA--TILREILK 127
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH       IHRDIK+ N+LL      K+ADFG+A  L     K +      GT  
Sbjct: 128 GLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNX---FVGTPF 181
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE    S    K D++S G+  +EL  G  P  D        ++ + +     +   
Sbjct: 182 WMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSD--------LHPMRVLFLIPKNSP 233
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             L+ + S  F+ E ++       C +K P  RPT  E+++
Sbjct: 234 PTLEGQHSKPFK-EFVEA------CLNKDPRFRPTAKELLK 267

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 25  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 73
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 74  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 130
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 131 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEXTAREGAKFPIKW 182
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 183 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 234
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 235 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 272

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 67
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 68  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 124
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 125 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEXTAREGAKFPIKW 176
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 228
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 229 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 266

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 97/210 (46%), Gaps = 29/210 (13%)
Query: 535 GQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           G  G  ++Y  D     +GE+VAVK L          +    QL  G + E+E L  + H
Sbjct: 20  GHFGKVSLYCYDPTNDGTGEMVAVKAL---------KEGCGPQLRSGWQREIEILRTLYH 70
Query: 592 KNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           ++IVK    C         LV EY+P G+L D L +  V L        A  + +G+AYL
Sbjct: 71  EHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGL--AQLLLFAQQICEGMAYL 128
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA-----RGGKDSTTTVIAGTYG 704
           H       IHR + + N+LLD +   K+ DFG+AK +       R  +D  + V      
Sbjct: 129 H---AQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF----- 180
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE     K     DV+SFGV L EL+T
Sbjct: 181 WYAPECLKECKFYYASDVWSFGVTLYELLT 210

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 84  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 143
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 144 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 200
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 201 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 248
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 249 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 292

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 41/231 (17%)
Query: 520 DQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           +QREI  A T    +G G  G V++  L   + VA+KK+              LQ  +  
Sbjct: 36  EQREI--AYTNCKVIGNGSFGVVFQAKLVESDEVAIKKV--------------LQDKRFK 79
Query: 580 KTEVETLGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
             E++ +  ++H N+V L  +F S       ++ N LV EY+P      + H   +    
Sbjct: 80  NRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN-LVLEYVPETVYRASRHYAKLKQTM 138
Query: 633 PTR--HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVL 686
           P        + + + LAY+H      I HRDIK  N+LLD    P    K+ DFG AK+L
Sbjct: 139 PMLLIKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLD---PPSGVLKLIDFGSAKIL 192
Query: 687 QARGGKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGR 736
            A    +   + I   Y Y APE  + ++  TT  D++S G V+ EL+ G+
Sbjct: 193 IA---GEPNVSXICSRY-YRAPELIFGATNYTTNIDIWSTGCVMAELMQGQ 239

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 156 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 260
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 261 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 127/297 (42%), Gaps = 43/297 (14%)
Query: 522 REILEAMTEKNKV-GQGGSGTV----YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           REI  +     K+ G G SG V     ++       VA+K L        A  T++ + D
Sbjct: 44  REIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKAL-------KAGYTERQRRD 96
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKG---LVHLD 631
               +E   +G   H NI++L    +     ++V EYM NG+L   L  H G   ++ L 
Sbjct: 97  --FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLV 154
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
              R     GV  G+ YL        +HRD+ + N+L+D N   KV+DFG+++VL+    
Sbjct: 155 GMLR-----GVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPD 206
Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII 750
              TTT       + APE       ++  DV+SFGVV+ E++  G +P            
Sbjct: 207 AAXTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERP------------ 254
Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           YW     D    + E             + Q++   + C  K  A RP  +++V +L
Sbjct: 255 YWNMTNRDVISSVEEGYRLPAPMGCPHALHQLM---LDCWHKDRAQRPRFSQIVSVL 308

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V+  +   + +  A+K L  ++  V   D  +  +   ++  V +L    H 
Sbjct: 26  LGKGSFGKVFLAEFKKTNQFFAIKAL--KKDVVLMDDDVECTM---VEKRVLSLA-WEHP 79
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVAQGLAYLHH 651
            +  ++C F +      V EY+  G+L    H    H  D       A  +  GL +LH 
Sbjct: 80  FLTHMFCTFQTKENLFFVMEYLNGGDL--MYHIQSCHKFDLSRATFYAAEIILGLQFLHS 137
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I++RD+K  NILLD +   K+ADFG+ K        D+ T    GT  Y+APE  
Sbjct: 138 ---KGIVYRDLKLDNILLDKDGHIKIADFGMCK---ENMLGDAKTNEFCGTPDYIAPEIL 191
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKP 738
              K     D +SFGV+L E++ G+ P
Sbjct: 192 LGQKYNHSVDWWSFGVLLYEMLIGQSP 218

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 97/210 (46%), Gaps = 29/210 (13%)
Query: 535 GQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           G  G  ++Y  D     +GE+VAVK L          +    QL  G + E+E L  + H
Sbjct: 19  GHFGKVSLYCYDPTNDGTGEMVAVKAL---------KEGCGPQLRSGWQREIEILRTLYH 69
Query: 592 KNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           ++IVK    C         LV EY+P G+L D L +  V L        A  + +G+AYL
Sbjct: 70  EHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGL--AQLLLFAQQICEGMAYL 127
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA-----RGGKDSTTTVIAGTYG 704
           H       IHR + + N+LLD +   K+ DFG+AK +       R  +D  + V      
Sbjct: 128 H---AQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF----- 179
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
           + APE     K     DV+SFGV L EL+T
Sbjct: 180 WYAPECLKECKFYYASDVWSFGVTLYELLT 209

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 18/250 (7%)
Query: 494 AITEPDETLSSSFFPYD--VKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSG 550
           AI +P    S+   P    +K    +  D R +   M  +  +G+GG    Y+I D+++ 
Sbjct: 9   AIAKPSAKPSAHVDPKSAPLKEIPDVLVDPRTMKRYMRGRF-LGKGGFAKCYEITDMDTK 67
Query: 551 EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV 610
           EV A K        V  S   +    + + TE+    ++ + ++V  + +F       +V
Sbjct: 68  EVFAGKV-------VPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVV 120
Query: 611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD 670
            E     +L + LHK    +  P          QG+ YLH+     +IHRD+K  N+ L+
Sbjct: 121 LEICRRRSLLE-LHKRRKAVTEPEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLN 176
Query: 671 VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLM 730
            +   K+ DFG+A  ++  G +  T   + GT  Y+APE       + + D++S G +L 
Sbjct: 177 DDMDVKIGDFGLATKIEFDGERKKT---LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILY 233
Query: 731 ELITGRKPVE 740
            L+ G+ P E
Sbjct: 234 TLLVGKPPFE 243

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEIXINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 123/288 (42%), Gaps = 47/288 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E  T+  K+G+G  G V+K ID  + +VVA+K +  +  +    D  Q         E+ 
Sbjct: 22  ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ---------EIT 72
Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            L       + K Y  +       ++ EY+  G+  D L  G   LD      I   + +
Sbjct: 73  VLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILK 130
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH       IHRDIK+ N+LL  + + K+ADFG+A  L     K +      GT  
Sbjct: 131 GLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNX---FVGTPF 184
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE    S   +K D++S G+  +EL  G  P                    ++   M
Sbjct: 185 WMAPEVIKQSAYDSKADIWSLGITAIELARGEPP-------------------HSELHPM 225
Query: 765 EVL-------DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           +VL          L G++   + + +     C +K P+ RPT  E+++
Sbjct: 226 KVLFLIPKNNPPTLEGNYSKPLKEFVEA---CLNKEPSFRPTAKELLK 270

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+ +VL+       TT     
Sbjct: 156 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKI 212
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 260
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 261 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 156 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 260
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 261 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 156 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 260
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 261 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 67
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 68  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 124
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 125 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTAREGAKFPIKW 176
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 228
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 229 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 266

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 123/288 (42%), Gaps = 47/288 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E  T+  K+G+G  G V+K ID  + +VVA+K +  +  +    D  Q         E+ 
Sbjct: 7   ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ---------EIT 57
Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            L       + K Y  +       ++ EY+  G+  D L  G   LD      I   + +
Sbjct: 58  VLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILK 115
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           GL YLH       IHRDIK+ N+LL  + + K+ADFG+A  L     K +      GT  
Sbjct: 116 GLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNX---FVGTPF 169
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE    S   +K D++S G+  +EL  G  P                    ++   M
Sbjct: 170 WMAPEVIKQSAYDSKADIWSLGITAIELARGEPP-------------------HSELHPM 210
Query: 765 EVL-------DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           +VL          L G++   + + +     C +K P+ RPT  E+++
Sbjct: 211 KVLFLIPKNNPPTLEGNYSKPLKEFVEA---CLNKEPSFRPTAKELLK 255

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 67  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 126
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 127 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 183
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 184 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 231
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 232 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 275

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 14  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 62
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 63  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 119
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 120 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTAREGAKFPIKW 171
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
            APE       T K DV+SFG++L E++T GR P
Sbjct: 172 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 205

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 22/213 (10%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWS--QRTKVSASDTDQLQLDKGLKTEVETLGNI 589
            +V + GSG   ++ L   +V  V++     ++T VS S   +L        EV  L  +
Sbjct: 40  QRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLL------EEVAVLKLL 93
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFGVAQGLAY 648
            H NI+KLY +F       LV E    G L+D  +H+  +  +      I   V  G+ Y
Sbjct: 94  DHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTY 151
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           LH      I+HRD+K  N+LL+   +    K+ DFG++ V + +           GT  Y
Sbjct: 152 LHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ----KKMKERLGTAYY 204
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           +APE     K   KCDV+S GV+L  L+ G  P
Sbjct: 205 IAPE-VLRKKYDEKCDVWSIGVILFILLAGYPP 236

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 154/362 (42%), Gaps = 82/362 (22%)
Query: 522 REILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           R +L       K+G+G  G V+K ID  +GEVVAVKK++        + TD  +  + + 
Sbjct: 5   RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFD----AFQNSTDAQRTFREIM 60
Query: 581 TEVETLGNIRHKNIVKLYCYFSS-----LYCNLLVYEYMP-------NGNLWDALHKGLV 628
              E  G   H+NIV L     +     +Y   LV++YM          N+ + +HK  V
Sbjct: 61  ILTELSG---HENIVNLLNVLRADNDRDVY---LVFDYMETDLHAVIRANILEPVHKQYV 114
Query: 629 HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-- 686
                      + + + + YLH G L   +HRD+K +NILL+     KVADFG+++    
Sbjct: 115 ----------VYQLIKVIKYLHSGGL---LHRDMKPSNILLNAECHVKVADFGLSRSFVN 161
Query: 687 ----------------QARGGKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVL 729
                           +         T    T  Y APE    S+K T   D++S G +L
Sbjct: 162 IRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCIL 221
Query: 730 MELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD-------KKLSGSFRDEMIQV 782
            E++ G KP           I+  S  ++  E I+ V+D       + +   F   MI+ 
Sbjct: 222 GEILCG-KP-----------IFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIES 269
Query: 783 L--RIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNK-----SNKESSNATKIK 835
           L  ++ IR ++K        N ++++  +AD C  E+    +K      NK  S    +K
Sbjct: 270 LKEKVEIRQSNKRDIFTKWKNLLLKINPKAD-CNEEALDLLDKLLQFNPNKRISANDALK 328
Query: 836 NP 837
           +P
Sbjct: 329 HP 330

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 25  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 73
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 74  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 130
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 131 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTAREGAKFPIKW 182
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 183 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 234
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 235 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 272

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 156 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 260
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 261 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 22/226 (9%)
Query: 523 EILEAMTEKNKVGQGGSGTVYKIDLNSGE----VVAVKKLWSQRTKVSASDTDQLQLDKG 578
           +I E+  +  K+G G  G V      +G     +  +KK    + + S  + +  +  + 
Sbjct: 33  KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEE 92
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL---HKGLVHLDWPTR 635
           +  E+  L ++ H NI+KL+  F       LV E+   G L++ +   HK     D    
Sbjct: 93  IYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHK----FDECDA 148
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN---YQPKVADFGIAKVLQARGGK 692
             I   +  G+ YLH      I+HRDIK  NILL+        K+ DFG++        K
Sbjct: 149 ANIMKQILSGICYLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFF----SK 201
Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           D       GT  Y+APE     K   KCDV+S GV++  L+ G  P
Sbjct: 202 DYKLRDRLGTAYYIAPE-VLKKKYNEKCDVWSCGVIMYILLCGYPP 246

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEIXINKMLNHE 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 123
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 124 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMXGTLPYVAPELLK 180
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 181 RREFHAEPVDVWSCGIVLTAMLAGELP 207

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 24  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 72
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 73  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 129
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 130 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTAREGAKFPIKW 181
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 182 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 233
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 234 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 271

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEIXINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMXGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V EYM NG+L   L K            +  G
Sbjct: 94  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 153
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 154 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 210
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 211 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 258
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 259 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 302

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINAMLNHE 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 123
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 124 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 180
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 181 RREFHAEPVDVWSCGIVLTAMLAGELP 207

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 29  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 77
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 78  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 134
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 135 IEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTAREGAKFPIKW 186
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 187 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 238
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 239 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 276

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 127/297 (42%), Gaps = 43/297 (14%)
Query: 522 REILEAMTEKNKV-GQGGSGTV----YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           REI  +     K+ G G SG V     ++       VA+K L        A  T++ + D
Sbjct: 44  REIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKAL-------KAGYTERQRRD 96
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKG---LVHLD 631
               +E   +G   H NI++L    +     ++V EYM NG+L   L  H G   ++ L 
Sbjct: 97  --FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLV 154
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
              R     GV  G+ YL        +HRD+ + N+L+D N   KV+DFG+++VL+    
Sbjct: 155 GMLR-----GVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPD 206
Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII 750
              TTT       + APE       ++  DV+SFGVV+ E++  G +P            
Sbjct: 207 AAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERP------------ 254
Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           YW     D    + E             + Q++   + C  K  A RP  +++V +L
Sbjct: 255 YWNMTNRDVISSVEEGYRLPAPMGCPHALHQLM---LDCWHKDRAQRPRFSQIVSVL 308

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 21/208 (10%)
Query: 533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G +G V    + +SG++VAVKK+          D  + Q  + L  EV  + + +H
Sbjct: 36  KIGEGSTGIVCIATVRSSGKLVAVKKM----------DLRKQQRRELLFNEVVIMRDYQH 85
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           +N+V++Y  +       +V E++  G L D +      ++      +   V Q L+ LH 
Sbjct: 86  ENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLH- 142
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVIAGTYGYLAPEY 710
                +IHRDIKS +ILL  + + K++DFG      A+  K+      + GT  ++APE 
Sbjct: 143 --AQGVIHRDIKSDSILLTHDGRVKLSDFGFC----AQVSKEVPRRKXLVGTPYWMAPEL 196
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP 738
                   + D++S G++++E++ G  P
Sbjct: 197 ISRLPYGPEVDIWSLGIMVIEMVDGEPP 224

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 123
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 124 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 180
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 181 RREFHAEPVDVWSCGIVLTAMLAGELP 207

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +++G G  G V+K+      +V  +KL     K +  +         +  E++ L     
Sbjct: 15  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQ--------IIRELQVLHECNS 66
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
             IV  Y  F S     +  E+M  G+L D + K    +      K++  V +GL YL  
Sbjct: 67  PYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQILGKVSIAVIKGLTYLRE 125
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                I+HRD+K +NIL++   + K+ DFG++  L      D       GT  Y++PE  
Sbjct: 126 K--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDEMANEFVGTRSYMSPERL 178
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKP 738
             +  + + D++S G+ L+E+  GR P
Sbjct: 179 QGTHYSVQSDIWSMGLSLVEMAVGRYP 205

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 21/208 (10%)
Query: 533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G +G V    + +SG++VAVKK+          D  + Q  + L  EV  + + +H
Sbjct: 38  KIGEGSTGIVCIATVRSSGKLVAVKKM----------DLRKQQRRELLFNEVVIMRDYQH 87
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           +N+V++Y  +       +V E++  G L D +      ++      +   V Q L+ LH 
Sbjct: 88  ENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLH- 144
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVIAGTYGYLAPEY 710
                +IHRDIKS +ILL  + + K++DFG      A+  K+      + GT  ++APE 
Sbjct: 145 --AQGVIHRDIKSDSILLTHDGRVKLSDFGFC----AQVSKEVPRRKXLVGTPYWMAPEL 198
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP 738
                   + D++S G++++E++ G  P
Sbjct: 199 ISRLPYGPEVDIWSLGIMVIEMVDGEPP 226

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 123
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 124 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 180
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 181 RREFHAEPVDVWSCGIVLTAMLAGELP 207

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           L  + H  I++++  F       ++ +Y+  G L+  L K     + P     A  V   
Sbjct: 60  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPN-PVAKFYAAEVCLA 118
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L YLH      II+RD+K  NILLD N   K+ DFG AK +         T  + GT  Y
Sbjct: 119 LEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKYVP------DVTYXLCGTPDY 169
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           +APE   +       D +SFG+++ E++ G  P  D
Sbjct: 170 IAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYD 205

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 26/212 (12%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V    D  +G+  AVK +  ++ K     TD+    + L  EV+ L  + H 
Sbjct: 34  LGKGSFGEVILCKDKITGQECAVKVISKRQVK---QKTDK----ESLLREVQLLKQLDHP 86
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           NI+KLY +F       LV E    G L+D +   K    +D     +I   V  G+ Y+H
Sbjct: 87  NIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAA---RIIRQVLSGITYMH 143
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQA-RGGKDSTTTVIAGTYGYL 706
               + I+HRD+K  N+LL+   +    ++ DFG++   +A +  KD       GT  Y+
Sbjct: 144 K---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI-----GTAYYI 195
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           APE  + +    KCDV+S GV+L  L++G  P
Sbjct: 196 APEVLHGT-YDEKCDVWSTGVILYILLSGCPP 226

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 123
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 124 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 180
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 181 RREFHAEPVDVWSCGIVLTAMLAGELP 207

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 13  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 63
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 64  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 121
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 122 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 178
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 179 RREFHAEPVDVWSCGIVLTAMLAGELP 205

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 21/208 (10%)
Query: 533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G +G V    + +SG++VAVKK+          D  + Q  + L  EV  + + +H
Sbjct: 81  KIGEGSTGIVCIATVRSSGKLVAVKKM----------DLRKQQRRELLFNEVVIMRDYQH 130
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           +N+V++Y  +       +V E++  G L D +      ++      +   V Q L+ LH 
Sbjct: 131 ENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLH- 187
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVIAGTYGYLAPEY 710
                +IHRDIKS +ILL  + + K++DFG      A+  K+      + GT  ++APE 
Sbjct: 188 --AQGVIHRDIKSDSILLTHDGRVKLSDFGFC----AQVSKEVPRRKXLVGTPYWMAPEL 241
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP 738
                   + D++S G++++E++ G  P
Sbjct: 242 ISRLPYGPEVDIWSLGIMVIEMVDGEPP 269

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 21/208 (10%)
Query: 533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G +G V    + +SG++VAVKK+          D  + Q  + L  EV  + + +H
Sbjct: 158 KIGEGSTGIVCIATVRSSGKLVAVKKM----------DLRKQQRRELLFNEVVIMRDYQH 207
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           +N+V++Y  +       +V E++  G L D +      ++      +   V Q L+ LH 
Sbjct: 208 ENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLH- 264
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVIAGTYGYLAPEY 710
                +IHRDIKS +ILL  + + K++DFG      A+  K+      + GT  ++APE 
Sbjct: 265 --AQGVIHRDIKSDSILLTHDGRVKLSDFGFC----AQVSKEVPRRKXLVGTPYWMAPEL 318
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP 738
                   + D++S G++++E++ G  P
Sbjct: 319 ISRLPYGPEVDIWSLGIMVIEMVDGEPP 346

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 30/215 (13%)
Query: 533 KVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G G  G VY   D+ + EVVA+KK+       S   +++   D  +  EV  L  +RH
Sbjct: 61  EIGHGSFGAVYFARDVRNSEVVAIKKM-----SYSGKQSNEKWQD--IIKEVRFLQKLRH 113
Query: 592 KNIVKLY-CYFSSLYCNLLVYEYM--PNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
            N ++   CY    +   LV EY      +L +   K L  ++      +  G  QGLAY
Sbjct: 114 PNTIQYRGCYLRE-HTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA---VTHGALQGLAY 169
Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           LH H +    IHRD+K+ NILL      K+ DFG A ++       +      GT  ++A
Sbjct: 170 LHSHNM----IHRDVKAGNILLSEPGLVKLGDFGSASIM-------APANXFVGTPYWMA 218
Query: 708 PEYAYS---SKATTKCDVYSFGVVLMELITGRKPV 739
           PE   +    +   K DV+S G+  +EL   + P+
Sbjct: 219 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 253

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 21/208 (10%)
Query: 533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G +G V    + +SG++VAVKK+          D  + Q  + L  EV  + + +H
Sbjct: 27  KIGEGSTGIVCIATVRSSGKLVAVKKM----------DLRKQQRRELLFNEVVIMRDYQH 76
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           +N+V++Y  +       +V E++  G L D +      ++      +   V Q L+ LH 
Sbjct: 77  ENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLH- 133
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVIAGTYGYLAPEY 710
                +IHRDIKS +ILL  + + K++DFG      A+  K+      + GT  ++APE 
Sbjct: 134 --AQGVIHRDIKSDSILLTHDGRVKLSDFGFC----AQVSKEVPRRKXLVGTPYWMAPEL 187
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP 738
                   + D++S G++++E++ G  P
Sbjct: 188 ISRLPYGPEVDIWSLGIMVIEMVDGEPP 215

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 44/286 (15%)
Query: 528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +T K+K+G G  G VY+          V K +S    V     D +++++ LK E   + 
Sbjct: 15  ITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVEEFLK-EAAVMK 64
Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGL 646
            I+H N+V+L    +      ++ E+M  GNL D L +     ++      +A  ++  +
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 124
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---Y 703
            YL        IHRD+ + N L+  N+  KVADFG+++++        T T  AG     
Sbjct: 125 EYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DTYTAHAGAKFPI 176
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV---SIKVDT 759
            + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y +     +++ 
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVYELLEKDYRMER 233
Query: 760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 234 PEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 264

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 44/286 (15%)
Query: 528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +T K+K+G G  G VY+          V K +S    V     D +++++ LK E   + 
Sbjct: 19  ITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVEEFLK-EAAVMK 68
Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGL 646
            I+H N+V+L    +      ++ E+M  GNL D L +     ++      +A  ++  +
Sbjct: 69  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 128
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---Y 703
            YL        IHRD+ + N L+  N+  KVADFG+++++        T T  AG     
Sbjct: 129 EYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DTYTAHAGAKFPI 180
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV---SIKVDT 759
            + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y +     +++ 
Sbjct: 181 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVYELLEKDYRMER 237
Query: 760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 238 PEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 268

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 44/286 (15%)
Query: 528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +T K+K+G G  G VY+          V K +S    V     D +++++ LK E   + 
Sbjct: 15  ITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVEEFLK-EAAVMK 64
Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGL 646
            I+H N+V+L    +      ++ E+M  GNL D L +     ++      +A  ++  +
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 124
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---Y 703
            YL        IHRD+ + N L+  N+  KVADFG+++++        T T  AG     
Sbjct: 125 EYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DTYTAHAGAKFPI 176
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV---SIKVDT 759
            + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y +     +++ 
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVYELLEKDYRMER 233
Query: 760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 234 PEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 264

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 123
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 124 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 180
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 181 RREFHAEPVDVWSCGIVLTAMLAGELP 207

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 123
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 124 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 180
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 181 RREFHAEPVDVWSCGIVLTAMLAGELP 207

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 12/205 (5%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V      + EV    K+  ++  +   +   +  ++ +      L N++H  
Sbjct: 46  IGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNV-----LLKNVKHPF 100
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +V L+  F +      V +Y+  G L+  L +    L+ P     A  +A  L YLH   
Sbjct: 101 LVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLE-PRARFYAAEIASALGYLHS-- 157
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I++RD+K  NILLD      + DFG+ K        +STT+   GT  YLAPE  + 
Sbjct: 158 -LNIVYRDLKPENILLDSQGHIVLTDFGLCK---ENIEHNSTTSTFCGTPEYLAPEVLHK 213
Query: 714 SKATTKCDVYSFGVVLMELITGRKP 738
                  D +  G VL E++ G  P
Sbjct: 214 QPYDRTVDWWCLGAVLYEMLYGLPP 238

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 123
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 124 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 180
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 181 RREFHAEPVDVWSCGIVLTAMLAGELP 207

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 135/305 (44%), Gaps = 59/305 (19%)
Query: 517 ISFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           +S D+ E+    +T K+K+G G  G VY+          V K +S    V     D +++
Sbjct: 1   MSLDKWEMERTDITMKHKLGGGQFGEVYE---------GVWKKYSLTVAVKTLKEDTMEV 51
Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR 635
           ++ LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +         R
Sbjct: 52  EEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-------NR 103
Query: 636 HKI--------AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ 687
            ++        A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++ 
Sbjct: 104 QEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 160
Query: 688 ARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF 743
                  T T  AG      + APE    +K + K DV++FGV+L E+ T G  P     
Sbjct: 161 G-----DTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP--- 212
Query: 744 GDNKNIIYWV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
           G + + +Y +     +++  EG  E               +V  +   C   +P+ RP+ 
Sbjct: 213 GIDPSQVYELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSF 257
Query: 801 NEVVQ 805
            E+ Q
Sbjct: 258 AEIHQ 262

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 66/308 (21%)
Query: 534 VGQGGSGTVYK------IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V++      +      +VAVK L   + + SA      Q +  L  E +   
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKML---KEEASADMQADFQREAALMAEFD--- 108
Query: 588 NIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHK-------GLVHLDWPTRHK- 637
              + NIVKL   C      C  L++EYM  G+L + L          L H D  TR + 
Sbjct: 109 ---NPNIVKLLGVCAVGKPMC--LLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARV 163
Query: 638 ---------------IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                          IA  VA G+AYL        +HRD+ + N L+  N   K+ADFG+
Sbjct: 164 SSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGL 220
Query: 683 AK-VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
           ++ +  A   K      I     ++ PE  + ++ TT+ DV+++GVVL E+ + G +P  
Sbjct: 221 SRNIYSADYYKADGNDAI--PIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPY- 277
Query: 741 DDFG-DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT 799
             +G  ++ +IY+V      ++G +    +        E+  ++R+   C SK PA RP+
Sbjct: 278 --YGMAHEEVIYYV------RDGNILACPENCPL----ELYNLMRL---CWSKLPADRPS 322
Query: 800 MNEVVQLL 807
              + ++L
Sbjct: 323 FCSIHRIL 330

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 21/208 (10%)
Query: 533 KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G +G V    + +SG++VAVKK+          D  + Q  + L  EV  + + +H
Sbjct: 31  KIGEGSTGIVCIATVRSSGKLVAVKKM----------DLRKQQRRELLFNEVVIMRDYQH 80
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           +N+V++Y  +       +V E++  G L D +      ++      +   V Q L+ LH 
Sbjct: 81  ENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLH- 137
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVIAGTYGYLAPEY 710
                +IHRDIKS +ILL  + + K++DFG      A+  K+      + GT  ++APE 
Sbjct: 138 --AQGVIHRDIKSDSILLTHDGRVKLSDFGFC----AQVSKEVPRRKXLVGTPYWMAPEL 191
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP 738
                   + D++S G++++E++ G  P
Sbjct: 192 ISRLPYGPEVDIWSLGIMVIEMVDGEPP 219

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMXGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMXGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V   ++  + E VAVK +  +R          +   + +K E+     + H+
Sbjct: 14  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHE 64
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH G
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH-G 122
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
           +   I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE   
Sbjct: 123 I--GITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMXGTLPYVAPELLK 179
Query: 713 SSKATTK-CDVYSFGVVLMELITGRKP 738
             +   +  DV+S G+VL  ++ G  P
Sbjct: 180 RREFHAEPVDVWSCGIVLTAMLAGELP 206

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 30/234 (12%)
Query: 525 LEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           +E      K+G+G  G    +     G    +K++    +++S+ + ++       + EV
Sbjct: 23  MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEI--NISRMSSKEREES------RREV 74
Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH-----LDWPTRH 636
             L N++H NIV+    F       +V +Y   G+L+  +   KG++      LDW  + 
Sbjct: 75  AVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQ- 133
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
                +   L ++H      I+HRDIKS NI L  +   ++ DFGIA+VL +        
Sbjct: 134 -----ICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS---TVELA 182
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
               GT  YL+PE   +     K D+++ G VL EL T +   E   G  KN++
Sbjct: 183 RACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEA--GSMKNLV 234

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 59/304 (19%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           S D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 2   SLDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 52
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +         R 
Sbjct: 53  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC-------NRQ 104
Query: 637 KI--------AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
           ++        A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++  
Sbjct: 105 EVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 161
Query: 689 RGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
                 T T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G
Sbjct: 162 -----DTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---G 213
Query: 745 DNKNIIYWV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN 801
            + + +Y +     +++  EG  E               +V  +   C   +P+ RP+  
Sbjct: 214 IDPSQVYELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFA 258
Query: 802 EVVQ 805
           E+ Q
Sbjct: 259 EIHQ 262

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 30/215 (13%)
Query: 533 KVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G G  G VY   D+ + EVVA+KK+       S   +++   D  +  EV  L  +RH
Sbjct: 22  EIGHGSFGAVYFARDVRNSEVVAIKKM-----SYSGKQSNEKWQD--IIKEVRFLQKLRH 74
Query: 592 KNIVKLY-CYFSSLYCNLLVYEYM--PNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
            N ++   CY    +   LV EY      +L +   K L  ++      +  G  QGLAY
Sbjct: 75  PNTIQYRGCYLRE-HTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA---VTHGALQGLAY 130
Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           LH H +    IHRD+K+ NILL      K+ DFG A ++       +      GT  ++A
Sbjct: 131 LHSHNM----IHRDVKAGNILLSEPGLVKLGDFGSASIM-------APANXFVGTPYWMA 179
Query: 708 PEYAYS---SKATTKCDVYSFGVVLMELITGRKPV 739
           PE   +    +   K DV+S G+  +EL   + P+
Sbjct: 180 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 214

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 28/214 (13%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            K+G G  G V+    N+   VAVK L      V A              E   +  ++H
Sbjct: 18  KKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA-----------FLEEANLMKTLQH 66
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAY 648
             +V+LY   +      ++ E+M  G+L D L     G V L  P     +  +A+G+AY
Sbjct: 67  DKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLL--PKLIDFSAQIAEGMAY 124
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHRD+++ N+L+  +   K+ADFG+A+V++     D+  T   G      +
Sbjct: 125 IER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIE-----DNEYTAREGAKFPIKW 176
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
            APE       T K +V+SFG++L E++T G+ P
Sbjct: 177 TAPEAINFGCFTIKSNVWSFGILLYEIVTYGKIP 210

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 17/209 (8%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G  GTV+K  +  + E+VA+K+       V   D D+      L+ E+  L  ++H
Sbjct: 9   KIGEGTYGTVFKAKNRETHEIVALKR-------VRLDDDDEGVPSSALR-EICLLKELKH 60
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           KNIV+L+    S     LV+E+  + +L          LD        F + +GL + H 
Sbjct: 61  KNIVRLHDVLHSDKKLTLVFEFC-DQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHS 119
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                ++HRD+K  N+L++ N + K+ADFG+A+   A G      +    T  Y  P+  
Sbjct: 120 ---RNVLHRDLKPQNLLINRNGELKLADFGLAR---AFGIPVRCYSAEVVTLWYRPPDVL 173
Query: 712 YSSK-ATTKCDVYSFGVVLMELITGRKPV 739
           + +K  +T  D++S G +  EL    +P+
Sbjct: 174 FGAKLYSTSIDMWSAGCIFAELANAARPL 202

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 17/204 (8%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG+G  G V K  + ++G +VA+KK          SD D++ + K    E++ L  +RH+
Sbjct: 33  VGEGSYGMVMKCRNKDTGRIVAIKKFLE-------SDDDKM-VKKIAMREIKLLKQLRHE 84
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           N+V L           LV+E++ +  + D L      LD+    K  F +  G+ + H  
Sbjct: 85  NLVNLLEVCKKKKRWYLVFEFV-DHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHS- 142
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               IIHRDIK  NIL+  +   K+ DFG A+ L A G           T  Y APE   
Sbjct: 143 --HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG---EVYDDEVATRWYRAPELLV 197
Query: 713 SS-KATTKCDVYSFGVVLMELITG 735
              K     DV++ G ++ E+  G
Sbjct: 198 GDVKYGKAVDVWAIGCLVTEMFMG 221

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 44/285 (15%)
Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G G  G V+    N    VAVK L     K  +   D          E   +  ++H
Sbjct: 15  ERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPD------AFLAEANLMKQLQH 63
Query: 592 KNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAY 648
           + +V+LY   +   +Y   ++ EYM NG+L D L     + L       +A  +A+G+A+
Sbjct: 64  QRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 120
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGY 705
           +        IHR++++ NIL+      K+ADFG+A++++     D+  T   G      +
Sbjct: 121 IEE---RNYIHRNLRAANILVSDTLSCKIADFGLARLIE-----DNEYTAREGAKFPIKW 172
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
            APE       T K DV+SFG++L E++T GR P       N  +I       + + G  
Sbjct: 173 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQ------NLERGYR 224
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            V          +E+ Q++R+   C  + P  RPT + +  +L +
Sbjct: 225 MVRPDNCP----EELYQLMRL---CWKERPEDRPTFDYLRSVLED 262

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 26/212 (12%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V    D  +G+  AVK +  ++ K     TD+    + L  EV+ L  + H 
Sbjct: 57  LGKGSFGEVILCKDKITGQECAVKVISKRQVK---QKTDK----ESLLREVQLLKQLDHP 109
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           NI+KLY +F       LV E    G L+D +   K    +D     +I   V  G+ Y+H
Sbjct: 110 NIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAA---RIIRQVLSGITYMH 166
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQA-RGGKDSTTTVIAGTYGYL 706
               + I+HRD+K  N+LL+   +    ++ DFG++   +A +  KD       GT  Y+
Sbjct: 167 K---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI-----GTAYYI 218
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           APE  + +    KCDV+S GV+L  L++G  P
Sbjct: 219 APEVLHGT-YDEKCDVWSTGVILYILLSGCPP 249

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 5   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 55
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 56  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVL 114
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 115 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 166
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 167 XTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 223
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 224 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 265

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 135/305 (44%), Gaps = 59/305 (19%)
Query: 517 ISFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           +S D+ E+    +T K+K+G G  G VY+          V K +S    V     D +++
Sbjct: 1   MSLDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEV 51
Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR 635
           ++ LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +         R
Sbjct: 52  EEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-------NR 103
Query: 636 HKI--------AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ 687
            ++        A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++ 
Sbjct: 104 QEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 160
Query: 688 ARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF 743
                  T T  AG      + APE    +K + K DV++FGV+L E+ T G  P     
Sbjct: 161 G-----DTFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP--- 212
Query: 744 GDNKNIIYWV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
           G + + +Y +     +++  EG  E               +V  +   C   +P+ RP+ 
Sbjct: 213 GIDPSQVYELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSF 257
Query: 801 NEVVQ 805
            E+ Q
Sbjct: 258 AEIHQ 262

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 17/213 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  +   + + V   KL S+   +  SD+           E + +       
Sbjct: 83  IGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDS------AFFWEERDIMAFANSPW 136
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +V+L+C F       +V EYMP G+L + +    V   W   +     V   L  +H   
Sbjct: 137 VVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAE--VVLALDAIHS-- 192
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +IHRD+K  N+LLD +   K+ADFG    +   G     T V  GT  Y++PE   S
Sbjct: 193 -MGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVHCDTAV--GTPDYISPEVLKS 249
Query: 714 SKAT----TKCDVYSFGVVLMELITGRKPVEDD 742
                    +CD +S GV L E++ G  P   D
Sbjct: 250 QGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD 282

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 59
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 60  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 118
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 119 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 170
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 171 XTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 227
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 228 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 269

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 26/212 (12%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V    D  +G+  AVK +  ++ K     TD+    + L  EV+ L  + H 
Sbjct: 58  LGKGSFGEVILCKDKITGQECAVKVISKRQVK---QKTDK----ESLLREVQLLKQLDHP 110
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           NI+KLY +F       LV E    G L+D +   K    +D     +I   V  G+ Y+H
Sbjct: 111 NIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAA---RIIRQVLSGITYMH 167
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQA-RGGKDSTTTVIAGTYGYL 706
               + I+HRD+K  N+LL+   +    ++ DFG++   +A +  KD       GT  Y+
Sbjct: 168 K---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI-----GTAYYI 219
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           APE  + +    KCDV+S GV+L  L++G  P
Sbjct: 220 APEVLHGT-YDEKCDVWSTGVILYILLSGCPP 250

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG    Y+I D+++ EV A K        V  S   +    + + TE+    ++ + 
Sbjct: 34  LGKGGFAKCYEITDMDTKEVFAGKV-------VPKSMLLKPHQKEKMSTEIAIHKSLDNP 86
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           ++V  + +F       +V E     +L + LHK    +  P          QG+ YLH+ 
Sbjct: 87  HVVGFHGFFEDDDFVYVVLEICRRRSLLE-LHKRRKAVTEPEARYFMRQTIQGVQYLHNN 145
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRD+K  N+ L+ +   K+ DFG+A  ++  G +      + GT  Y+APE   
Sbjct: 146 R---VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKD---LCGTPNYIAPEVLC 199
Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVE 740
               + + D++S G +L  L+ G+ P E
Sbjct: 200 KKGHSFEVDIWSLGCILYTLLVGKPPFE 227

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 42/221 (19%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   DL++   +A+K++  + ++ S    +++ L K LK          HK
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLK----------HK 79
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNL-------WDALHKGLVHLDWPTRHKIAFGVAQG 645
           NIV+    FS      +  E +P G+L       W  L      + + T+      + +G
Sbjct: 80  NIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQ-----ILEG 134
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           L YLH    + I+HRDIK  N+L++  Y    K++DFG +K L    G +  T    GT 
Sbjct: 135 LKYLHD---NQIVHRDIKGDNVLINT-YSGVLKISDFGTSKRL---AGINPCTETFTGTL 187
Query: 704 GYLAPE------YAYSSKATTKCDVYSFGVVLMELITGRKP 738
            Y+APE        Y   A    D++S G  ++E+ TG+ P
Sbjct: 188 QYMAPEIIDKGPRGYGKAA----DIWSLGCTIIEMATGKPP 224

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 30/283 (10%)
Query: 533 KVGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K+G G  G V +   D  SG+ V+V     +   +S  +     +D  ++ EV  + ++ 
Sbjct: 15  KLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEA----MDDFIR-EVNAMHSLD 69
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H+N+++LY    +    + V E  P G+L D L K   H    T  + A  VA+G+ YL 
Sbjct: 70  HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE 128
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                  IHRD+ + N+LL      K+ DFG+ + L                + + APE 
Sbjct: 129 S---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPES 185
Query: 711 AYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
             +   +   D + FGV L E+ T G++P             W+ +       I+  +DK
Sbjct: 186 LKTRTFSHASDTWMFGVTLWEMFTYGQEP-------------WIGL---NGSQILHKIDK 229
Query: 770 KLSGSFRDEMI--QVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
           +     R E     +  + ++C +  P  RPT   +   L EA
Sbjct: 230 EGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 272

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 18/250 (7%)
Query: 494 AITEPDETLSSSFFPYD--VKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSG 550
           AI +P    S+   P    +K    +  D R +   M  +  +G+GG    Y+I D+++ 
Sbjct: 9   AIAKPSAKPSAHVDPKSAPLKEIPDVLVDPRTMKRYMRGRF-LGKGGFAKCYEITDMDTK 67
Query: 551 EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV 610
           EV A K        V  S   +    + + TE+    ++ + ++V  + +F       +V
Sbjct: 68  EVFAGKV-------VPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVV 120
Query: 611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD 670
            E     +L + LHK    +  P          QG+ YLH+     +IHRD+K  N+ L+
Sbjct: 121 LEICRRRSLLE-LHKRRKAVTEPEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLN 176
Query: 671 VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLM 730
            +   K+ DFG+A  ++  G +      + GT  Y+APE       + + D++S G +L 
Sbjct: 177 DDMDVKIGDFGLATKIEFDGERKKX---LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILY 233
Query: 731 ELITGRKPVE 740
            L+ G+ P E
Sbjct: 234 TLLVGKPPFE 243

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 18/250 (7%)
Query: 494 AITEPDETLSSSFFPYD--VKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSG 550
           AI +P    S+   P    +K    +  D R +   M  +  +G+GG    Y+I D+++ 
Sbjct: 9   AIAKPSAKPSAHVDPKSAPLKEIPDVLVDPRTMKRYMRGRF-LGKGGFAKCYEITDMDTK 67
Query: 551 EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV 610
           EV A K        V  S   +    + + TE+    ++ + ++V  + +F       +V
Sbjct: 68  EVFAGKV-------VPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVV 120
Query: 611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD 670
            E     +L + LHK    +  P          QG+ YLH+     +IHRD+K  N+ L+
Sbjct: 121 LEICRRRSLLE-LHKRRKAVTEPEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLN 176
Query: 671 VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLM 730
            +   K+ DFG+A  ++  G +      + GT  Y+APE       + + D++S G +L 
Sbjct: 177 DDMDVKIGDFGLATKIEFDGERKKD---LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILY 233
Query: 731 ELITGRKPVE 740
            L+ G+ P E
Sbjct: 234 TLLVGKPPFE 243

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 26/212 (12%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V    D  +G+  AVK +  ++ K     TD+    + L  EV+ L  + H 
Sbjct: 40  LGKGSFGEVILCKDKITGQECAVKVISKRQVK---QKTDK----ESLLREVQLLKQLDHP 92
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           NI+KLY +F       LV E    G L+D +   K    +D     +I   V  G+ Y+H
Sbjct: 93  NIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAA---RIIRQVLSGITYMH 149
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQA-RGGKDSTTTVIAGTYGYL 706
               + I+HRD+K  N+LL+   +    ++ DFG++   +A +  KD       GT  Y+
Sbjct: 150 K---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI-----GTAYYI 201
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           APE  + +    KCDV+S GV+L  L++G  P
Sbjct: 202 APEVLHGT-YDEKCDVWSTGVILYILLSGCPP 232

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 58/292 (19%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G+G  G V K+  + SG+++AVK++   R  V++ +  +L +D  L   + T+     
Sbjct: 58  ELGRGAYGVVEKMRHVPSGQIMAVKRI---RATVNSQEQKRLLMD--LDISMRTVD---- 108
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLW----------DALHKGLVH----LDWPTRHK 637
                  C F+  +   L  E    G++W          D  +K ++     +      K
Sbjct: 109 -------CPFTVTFYGALFRE----GDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGK 157
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           IA  + + L +LH  L   +IHRD+K +N+L++   Q K+ DFGI+  L     K    T
Sbjct: 158 IAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAK----T 211
Query: 698 VIAGTYGYLAPEYA----YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
           + AG   Y+APE           + K D++S G+ ++EL   R P  D +G       + 
Sbjct: 212 IDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPY-DSWGTP-----FQ 265
Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +K   +E   ++   K S  F D          +C  K+   RPT  E++Q
Sbjct: 266 QLKQVVEEPSPQLPADKFSAEFVD-------FTSQCLKKNSKERPTYPELMQ 310

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 24/213 (11%)
Query: 532 NKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+G G  G V    D  +G   A+K +  +++ V+ +      LD     EV  L  + 
Sbjct: 27  KKLGSGAYGEVLLCKDKLTGAERAIKII--KKSSVTTTSNSGALLD-----EVAVLKQLD 79
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDA--LHKGLVHLDWPTRHKIAFGVAQGLAY 648
           H NI+KLY +F       LV E    G L+D   L +    +D      I   V  G  Y
Sbjct: 80  HPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAAV---IMKQVLSGTTY 136
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           LH      I+HRD+K  N+LL+   +    K+ DFG++   +  GGK        GT  Y
Sbjct: 137 LHK---HNIVHRDLKPENLLLESKSRDALIKIVDFGLSAHFEV-GGKMKERL---GTAYY 189
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           +APE     K   KCDV+S GV+L  L+ G  P
Sbjct: 190 IAPE-VLRKKYDEKCDVWSCGVILYILLCGYPP 221

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 101/218 (46%), Gaps = 35/218 (16%)
Query: 526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
           E++  + K+G G  G V+    N    VAVK +      V A              E   
Sbjct: 182 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEA-----------FLAEANV 230
Query: 586 LGNIRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG-- 641
           +  ++H  +VKL+   +   +Y   ++ E+M  G+L D L K       P    I F   
Sbjct: 231 MKTLQHDKLVKLHAVVTKEPIY---IITEFMAKGSLLDFL-KSDEGSKQPLPKLIDFSAQ 286
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A+G+A++        IHRD+++ NIL+  +   K+ADFG+A+V    G K         
Sbjct: 287 IAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARV----GAKFPIK----- 334
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE       T K DV+SFG++LME++T GR P
Sbjct: 335 ---WTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIP 369

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 97/218 (44%), Gaps = 45/218 (20%)
Query: 535 GQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           G  G  ++Y  D     +GE+VAVK L         +D    Q   G K E++ L  + H
Sbjct: 25  GHFGKVSLYCYDPTNDGTGEMVAVKAL--------KADCGP-QHRSGWKQEIDILRTLYH 75
Query: 592 KNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG-------- 641
           ++I+K    C         LV EY+P G+L D L           RH I           
Sbjct: 76  EHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL----------PRHSIGLAQLLLFAQQ 125
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA-----RGGKDSTT 696
           + +G+AYLH       IHR++ + N+LLD +   K+ DFG+AK +       R  +D  +
Sbjct: 126 ICEGMAYLH---AQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDS 182
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
            V      + APE     K     DV+SFGV L EL+T
Sbjct: 183 PVF-----WYAPECLKEYKFYYASDVWSFGVTLYELLT 215

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 59
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 60  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVL 118
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 119 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 170
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 171 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 227
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 228 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 269

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 28/236 (11%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E +T+  + H  +VK Y   S  Y   +V EY+ NG L + L      L+     ++ + 
Sbjct: 53  EAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYD 112
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V +G+A+L        IHRD+ + N L+D +   KV+DFG+ + +       S  T    
Sbjct: 113 VCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPV 169
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
            +   APE  +  K ++K DV++FG+++ E+ + G+ P   D   N  ++    +KV   
Sbjct: 170 KWS--APEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPY--DLYTNSEVV----LKVSQG 221
Query: 761 EGIMEVLDKKLSGSFRDEMIQ--VLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR 814
             +           +R  +    + +I   C  + P  RPT     QLL+  +P R
Sbjct: 222 HRL-----------YRPHLASDTIYQIMYSCWHELPEKRPTFQ---QLLSSIEPLR 263

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 17  NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 67
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 68  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 126
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 127 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 178
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 179 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 235
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 236 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 277

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 59
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 60  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 118
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 119 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 170
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 171 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 227
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 228 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 269

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 34/229 (14%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K ++G+G  G V+  +  +      K L      V A     L   K  + E E L N++
Sbjct: 20  KRELGEGAFGKVFLAECYNLSPTKDKML----VAVKALKDPTLAARKDFQREAELLTNLQ 75
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK----GLVHLDWPTRH---------- 636
           H++IVK Y         ++V+EYM +G+L   L       ++ +D   R           
Sbjct: 76  HEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQM 135
Query: 637 -KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             IA  +A G+ YL        +HRD+ + N L+  N   K+ DFG+++ +       ST
Sbjct: 136 LHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVY------ST 186
Query: 696 TTVIAGTYG-----YLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
                G +      ++ PE     K TT+ DV+SFGV+L E+ T G++P
Sbjct: 187 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQP 235

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 97/218 (44%), Gaps = 45/218 (20%)
Query: 535 GQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           G  G  ++Y  D     +GE+VAVK L         +D    Q   G K E++ L  + H
Sbjct: 25  GHFGKVSLYCYDPTNDGTGEMVAVKAL--------KADCGP-QHRSGWKQEIDILRTLYH 75
Query: 592 KNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG-------- 641
           ++I+K    C         LV EY+P G+L D L           RH I           
Sbjct: 76  EHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL----------PRHSIGLAQLLLFAQQ 125
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA-----RGGKDSTT 696
           + +G+AYLH       IHR++ + N+LLD +   K+ DFG+AK +       R  +D  +
Sbjct: 126 ICEGMAYLHS---QHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDS 182
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
            V      + APE     K     DV+SFGV L EL+T
Sbjct: 183 PVF-----WYAPECLKEYKFYYASDVWSFGVTLYELLT 215

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 59
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 60  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 118
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 119 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 170
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 171 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 227
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 228 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 269

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 5   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 55
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 56  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 114
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 115 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 166
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 167 YTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 223
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 224 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 265

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 24/212 (11%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           +++G+G  G+V       +  N+G +VAVK+L         S  DQ    +  + E++ L
Sbjct: 13  SQLGKGNFGSVELCRYDPLGDNTGALVAVKQL-------QHSGPDQ---QRDFQREIQIL 62
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             +    IVK     Y        LV EY+P+G L D L +    LD       +  + +
Sbjct: 63  KALHSDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICK 122
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        +HRD+ + NIL++     K+ADFG+AK+L     KD       G   
Sbjct: 123 GMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPL--DKDXXVVREPGQSP 177
Query: 705 --YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
             + APE    +  + + DV+SFGVVL EL T
Sbjct: 178 IFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 209

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V E M NG+L   L K            +  G
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 156 IASGMKYLSD---MGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 260
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 261 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 6   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 56
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 57  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 115
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 116 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 167
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 168 YTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 224
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 225 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 266

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 135/304 (44%), Gaps = 59/304 (19%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 54
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +         R 
Sbjct: 55  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC-------NRQ 106
Query: 637 KI--------AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
           ++        A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++  
Sbjct: 107 EVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 163
Query: 689 RGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
                 T T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G
Sbjct: 164 -----DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---G 215
Query: 745 DNKNIIYWV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN 801
            + + +Y +     +++  EG  E               +V  +   C   +P+ RP+  
Sbjct: 216 IDLSQVYELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFA 260
Query: 802 EVVQ 805
           E+ Q
Sbjct: 261 EIHQ 264

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDA--LHKGLVHLDWPTRHKIA 639
           EV  L  + H NI+KLY +F       LV E    G L+D   L +    +D      I 
Sbjct: 54  EVAVLKQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAAV---IM 110
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTT 696
             V  G  YLH      I+HRD+K  N+LL+   +    K+ DFG++   +  GGK    
Sbjct: 111 KQVLSGTTYLHK---HNIVHRDLKPENLLLESKSRDALIKIVDFGLSAHFEV-GGKMKER 166
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
               GT  Y+APE     K   KCDV+S GV+L  L+ G  P
Sbjct: 167 L---GTAYYIAPE-VLRKKYDEKCDVWSCGVILYILLCGYPP 204

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 42/221 (19%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   DL++   +A+K++  + ++ S    +++ L K LK          HK
Sbjct: 16  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLK----------HK 65
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNL-------WDALHKGLVHLDWPTRHKIAFGVAQG 645
           NIV+    FS      +  E +P G+L       W  L      + + T+      + +G
Sbjct: 66  NIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQ-----ILEG 120
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           L YLH    + I+HRDIK  N+L++  Y    K++DFG +K L    G +  T    GT 
Sbjct: 121 LKYLHD---NQIVHRDIKGDNVLINT-YSGVLKISDFGTSKRL---AGINPCTETFTGTL 173
Query: 704 GYLAPE------YAYSSKATTKCDVYSFGVVLMELITGRKP 738
            Y+APE        Y   A    D++S G  ++E+ TG+ P
Sbjct: 174 QYMAPEIIDKGPRGYGKAA----DIWSLGCTIIEMATGKPP 210

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE 612
           VA+K L S  T+    D           +E   +G   H N++ L    +     +++ E
Sbjct: 64  VAIKTLKSGYTEKQRRD---------FLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITE 114
Query: 613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN 672
           +M NG+L   L +            +  G+A G+ YL        +HRD+ + NIL++ N
Sbjct: 115 FMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSN 171
Query: 673 YQPKVADFGIAKVLQARGGKDSTTTVIAGT--YGYLAPEYAYSSKATTKCDVYSFGVVLM 730
              KV+DFG+++ L+      + T+ + G     + APE     K T+  DV+S+G+V+ 
Sbjct: 172 LVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMW 231
Query: 731 ELIT-GRKPVED 741
           E+++ G +P  D
Sbjct: 232 EVMSYGERPYWD 243

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 135/304 (44%), Gaps = 59/304 (19%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 59
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +         R 
Sbjct: 60  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-------NRQ 111
Query: 637 KI--------AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
           ++        A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++  
Sbjct: 112 EVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 168
Query: 689 RGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
                 T T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G
Sbjct: 169 -----DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---G 220
Query: 745 DNKNIIYWV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN 801
            + + +Y +     +++  EG  E               +V  +   C   +P+ RP+  
Sbjct: 221 IDLSQVYELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFA 265
Query: 802 EVVQ 805
           E+ Q
Sbjct: 266 EIHQ 269

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           +E   +G   H NI++L    ++    +++ E+M NG L   L              +  
Sbjct: 66  SEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLR 125
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
           G+A G+ YL        +HRD+ + NIL++ N   KV+DFG+++ L+      + T+ + 
Sbjct: 126 GIASGMRYLAE---MSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSSLG 182
Query: 701 GT--YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
           G     + APE     K T+  D +S+G+V+ E+++ G +P  D
Sbjct: 183 GKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWD 226

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 6   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 56
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 57  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 115
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 116 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 167
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 168 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 224
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 225 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 266

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 6   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 56
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 57  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 115
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++        T
Sbjct: 116 LYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-----DT 167
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 168 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 224
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q
Sbjct: 225 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQ 266

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 135/304 (44%), Gaps = 59/304 (19%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 54
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +         R 
Sbjct: 55  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-------NRQ 106
Query: 637 KI--------AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
           ++        A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++  
Sbjct: 107 EVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 163
Query: 689 RGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
                 T T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G
Sbjct: 164 -----DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---G 215
Query: 745 DNKNIIYWV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN 801
            + + +Y +     +++  EG  E               +V  +   C   +P+ RP+  
Sbjct: 216 IDLSQVYELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFA 260
Query: 802 EVVQ 805
           E+ Q
Sbjct: 261 EIHQ 264

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 82  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 138
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 139 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 193
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 194 FVGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAGLPPFR---AGNEGLIFAKIIKLE 250

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 135/304 (44%), Gaps = 59/304 (19%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 54
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +         R 
Sbjct: 55  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC-------NRQ 106
Query: 637 KI--------AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
           ++        A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++  
Sbjct: 107 EVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 163
Query: 689 RGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
                 T T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G
Sbjct: 164 -----DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---G 215
Query: 745 DNKNIIYWV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN 801
            + + +Y +     +++  EG  E               +V  +   C   +P+ RP+  
Sbjct: 216 IDLSQVYELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFA 260
Query: 802 EVVQ 805
           E+ Q
Sbjct: 261 EIHQ 264

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 58/292 (19%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G+G  G V K+  + SG+++AVK++   R  V++ +  +L +D  L   + T+     
Sbjct: 14  ELGRGAYGVVEKMRHVPSGQIMAVKRI---RATVNSQEQKRLLMD--LDISMRTVD---- 64
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLW----------DALHKGLVH----LDWPTRHK 637
                  C F+  +   L  E    G++W          D  +K ++     +      K
Sbjct: 65  -------CPFTVTFYGALFRE----GDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGK 113
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           IA  + + L +LH  L   +IHRD+K +N+L++   Q K+ DFGI+  L     KD    
Sbjct: 114 IAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKD---- 167
Query: 698 VIAGTYGYLAPEYA----YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
           + AG   Y+APE           + K D++S G+ ++EL   R P  D +G       + 
Sbjct: 168 IDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPY-DSWGTP-----FQ 221
Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +K   +E   ++   K S  F D          +C  K+   RPT  E++Q
Sbjct: 222 QLKQVVEEPSPQLPADKFSAEFVD-------FTSQCLKKNSKERPTYPELMQ 266

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 80  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 136
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 137 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANA 191
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 192 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 248

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 24/212 (11%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           +++G+G  G+V       +  N+G +VAVK+L         S  DQ    +  + E++ L
Sbjct: 16  SQLGKGNFGSVELCRYDPLGDNTGALVAVKQL-------QHSGPDQ---QRDFQREIQIL 65
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             +    IVK     Y        LV EY+P+G L D L +    LD       +  + +
Sbjct: 66  KALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICK 125
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        +HRD+ + NIL++     K+ADFG+AK+L     KD       G   
Sbjct: 126 GMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPL--DKDYYVVREPGQSP 180
Query: 705 --YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
             + APE    +  + + DV+SFGVVL EL T
Sbjct: 181 IFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 212

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 82  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 138
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 139 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 193
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 194 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEGLIFAKIIKLE 250

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 135/304 (44%), Gaps = 59/304 (19%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 54
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +         R 
Sbjct: 55  EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-------NRQ 106
Query: 637 KI--------AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
           ++        A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++  
Sbjct: 107 EVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 163
Query: 689 RGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
                 T T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G
Sbjct: 164 -----DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---G 215
Query: 745 DNKNIIYWV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN 801
            + + +Y +     +++  EG  E               +V  +   C   +P+ RP+  
Sbjct: 216 IDLSQVYELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFA 260
Query: 802 EVVQ 805
           E+ Q
Sbjct: 261 EIHQ 264

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V E M NG+L   L K            +  G
Sbjct: 67  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRG 126
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 127 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 183
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 184 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 231
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 232 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 275

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 43/239 (17%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL---HKG---LVHLDWPTR 635
           E   +G   H N+V L    +     ++V E+M NG L DA    H G   ++ L    R
Sbjct: 94  EASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGAL-DAFLRKHDGQFTVIQLVGMLR 152
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
                G+A G+ YL        +HRD+ + NIL++ N   KV+DFG+++V++       T
Sbjct: 153 -----GIAAGMRYLAD---MGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYT 204
Query: 696 TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII---- 750
           TT       + APE     K T+  DV+S+G+V+ E+++ G +P  D    N+++I    
Sbjct: 205 TTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWD--MSNQDVIKAIE 262
Query: 751 --YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
             Y +   +D   G+ +++                   + C  K  A RP   ++V +L
Sbjct: 263 EGYRLPAPMDCPAGLHQLM-------------------LDCWQKERAERPKFEQIVGIL 302

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 13/182 (7%)
Query: 564 KVSASDTDQLQLD----KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNL 619
           +V+    D+ QL+    + L  EV  +  + H NIVKL+    +     L+ EY   G +
Sbjct: 39  EVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEV 98
Query: 620 WDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD 679
           +D L       +   R K    +   + Y H      I+HRD+K+ N+LLD +   K+AD
Sbjct: 99  FDYLVAHGRMKEKEARSKFR-QIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIAD 154
Query: 680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT-KCDVYSFGVVLMELITGRKP 738
           FG +      GGK  T     G+  Y APE     K    + DV+S GV+L  L++G  P
Sbjct: 155 FGFSNEFTV-GGKLDT---FCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 210
Query: 739 VE 740
            +
Sbjct: 211 FD 212

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 24/212 (11%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           +++G+G  G+V       +  N+G +VAVK+L         S  DQ    +  + E++ L
Sbjct: 17  SQLGKGNFGSVELCRYDPLGDNTGALVAVKQL-------QHSGPDQ---QRDFQREIQIL 66
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             +    IVK     Y        LV EY+P+G L D L +    LD       +  + +
Sbjct: 67  KALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICK 126
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        +HRD+ + NIL++     K+ADFG+AK+L     KD       G   
Sbjct: 127 GMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPL--DKDYYVVREPGQSP 181
Query: 705 --YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
             + APE    +  + + DV+SFGVVL EL T
Sbjct: 182 IFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 213

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 26/212 (12%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V    D  +G+  AVK +  ++ K     TD+    + L  EV+ L  + H 
Sbjct: 34  LGKGSFGEVILCKDKITGQECAVKVISKRQVK---QKTDK----ESLLREVQLLKQLDHP 86
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           NI KLY +F       LV E    G L+D +   K    +D     +I   V  G+ Y H
Sbjct: 87  NIXKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAA---RIIRQVLSGITYXH 143
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQA-RGGKDSTTTVIAGTYGYL 706
               + I+HRD+K  N+LL+   +    ++ DFG++   +A +  KD       GT  Y+
Sbjct: 144 K---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKXKDKI-----GTAYYI 195
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           APE  + +    KCDV+S GV+L  L++G  P
Sbjct: 196 APEVLHGT-YDEKCDVWSTGVILYILLSGCPP 226

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           +E   +G   H NI++L    ++    +++ E+M NG L   L              +  
Sbjct: 64  SEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLR 123
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
           G+A G+ YL        +HRD+ + NIL++ N   KV+DFG+++ L+      + T+ + 
Sbjct: 124 GIASGMRYLAE---MSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLG 180
Query: 701 GT--YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
           G     + APE     K T+  D +S+G+V+ E+++ G +P  D
Sbjct: 181 GKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWD 224

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 60  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 116
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 117 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 171
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 172 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 228

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 59  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 115
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 116 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 170
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 171 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 227

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 29/232 (12%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E   +G   H NI++L    +     ++V E M NG+L   L K            +  G
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +A G+ YL        +HRD+ + NIL++ N   KV+DFG+++VL+       TT     
Sbjct: 156 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK 760
              + +PE     K T+  DV+S+G+VL E+++ G +P            YW     D  
Sbjct: 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP------------YWEMSNQDVI 260
Query: 761 EGIMEVLDKKLSGSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           + + E         +R     D    + ++ + C  K    RP   ++V +L
Sbjct: 261 KAVDE--------GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 24/212 (11%)
Query: 532 NKVGQGGSGTVY-----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           +++G+G  G+V       +  N+G +VAVK+L         S  DQ    +  + E++ L
Sbjct: 29  SQLGKGNFGSVELCRYDPLGDNTGALVAVKQL-------QHSGPDQ---QRDFQREIQIL 78
Query: 587 GNIRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             +    IVK     Y        LV EY+P+G L D L +    LD       +  + +
Sbjct: 79  KALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICK 138
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        +HRD+ + NIL++     K+ADFG+AK+L     KD       G   
Sbjct: 139 GMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPL--DKDYYVVREPGQSP 193
Query: 705 --YLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
             + APE    +  + + DV+SFGVVL EL T
Sbjct: 194 IFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 225

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 80  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 136
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 137 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 191
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 192 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 248

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 80  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 136
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 137 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 191
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 192 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 248

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 58  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 114
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 115 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 169
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 170 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 226

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 57  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 113
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 114 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 168
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 169 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 225

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 83  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 139
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 140 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 194
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 195 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 251

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 87  ERDVMSRLDHPFFVKLYFCFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 143
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 144 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 198
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 199 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 255

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 82  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 138
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 139 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 193
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 194 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 250

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 82  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 138
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 139 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 193
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 194 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 250

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 82  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 138
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 139 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 193
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 194 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 250

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 85  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 141
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 142 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 196
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 197 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 253

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 80  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 136
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 137 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 191
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 192 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 248

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 64  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 120
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 121 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 175
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 176 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 232

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 564 KVSASDTDQLQLD----KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNL 619
           +V+    D+ QL+    + L  EV  +  + H NIVKL+    +     L+ EY   G +
Sbjct: 42  EVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEV 101
Query: 620 WDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD 679
           +D L       +   R K    +   + Y H      I+HRD+K+ N+LLD +   K+AD
Sbjct: 102 FDYLVAHGRMKEKEARSKFR-QIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIAD 157
Query: 680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT-KCDVYSFGVVLMELITGRKP 738
           FG +      G  D+      G   Y APE     K    + DV+S GV+L  L++G  P
Sbjct: 158 FGFSNEFTVGGKLDA----FCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 213
Query: 739 VE 740
            +
Sbjct: 214 FD 215

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 79  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 135
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 136 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANX 190
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 191 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 247

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 111/252 (44%), Gaps = 38/252 (15%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V K  D  + +  AVK +     K SA + D       +  EVE L  + H 
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVI----NKASAKNKDT----STILREVELLKKLDHP 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI+KL+          +V E    G L+D + K           +I   V  G+ Y+H  
Sbjct: 82  NIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHK- 139
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
               I+HRD+K  NILL+   +    K+ DFG++   Q    +++      GT  Y+APE
Sbjct: 140 --HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ----QNTKMKDRIGTAYYIAPE 193
Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII--------------YWVSI 755
               +    KCDV+S GV+L  L++G  P    +G N+  I               W +I
Sbjct: 194 VLRGT-YDEKCDVWSAGVILYILLSGTPPF---YGKNEYDILKRVETGKYAFDLPQWRTI 249
Query: 756 KVDTKEGIMEVL 767
             D K+ I ++L
Sbjct: 250 SDDAKDLIRKML 261

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 135/299 (45%), Gaps = 45/299 (15%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 250 NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 300
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +     ++    
Sbjct: 301 EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 359
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  ++  + YL        IHR++ + N L+  N+  KVADFG+++++        T
Sbjct: 360 LYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG-----DT 411
Query: 696 TTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIY 751
            T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G + + +Y
Sbjct: 412 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GIDLSQVY 468
Query: 752 WV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            +     +++  EG  E               +V  +   C   +P+ RP+  E+ Q  
Sbjct: 469 ELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAEIHQAF 512

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 83  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 139
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 140 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANS 194
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 195 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 251

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 538 GSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G   K+ L     +G+ VAVK +   +T++++S   +L        EV  +  + H N
Sbjct: 23  GKGNFAKVKLARHILTGKEVAVKII--DKTQLNSSSLQKLF------REVRIMKVLNHPN 74
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+    +     LV EY   G ++D L       +   R K    +   + Y H   
Sbjct: 75  IVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFR-QIVSAVQYCHQKF 133
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K+ N+LLD +   K+ADFG +      G K  T     G+  Y APE    
Sbjct: 134 ---IVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDT---FCGSPPYAAPELFQG 186
Query: 714 SKATT-KCDVYSFGVVLMELITGRKPVE 740
            K    + DV+S GV+L  L++G  P +
Sbjct: 187 KKYDGPEVDVWSLGVILYTLVSGSLPFD 214

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           K ++TE+  L  + H NI+KL   F +     LV E +  G L+D +    V   + +  
Sbjct: 93  KIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRI----VEKGYYSER 148
Query: 637 KIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDV---NYQPKVADFGIAKVLQARG 690
             A  V Q    +AYLH    + I+HRD+K  N+L      +   K+ADFG++K+++ + 
Sbjct: 149 DAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ- 204
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
                   + GT GY APE         + D++S G++   L+ G +P  D+ GD 
Sbjct: 205 ---VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ 257

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 538 GSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G   K+ L     +G+ VAVK +   +T++++S   +L        EV  +  + H N
Sbjct: 23  GKGNFAKVKLARHILTGKEVAVKII--DKTQLNSSSLQKLF------REVRIMKVLNHPN 74
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+    +     LV EY   G ++D L       +   R K    +   + Y H   
Sbjct: 75  IVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFR-QIVSAVQYCHQKF 133
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K+ N+LLD +   K+ADFG +      G K  T     G+  Y APE    
Sbjct: 134 ---IVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDT---FCGSPPYAAPELFQG 186
Query: 714 SKATT-KCDVYSFGVVLMELITGRKPVE 740
            K    + DV+S GV+L  L++G  P +
Sbjct: 187 KKYDGPEVDVWSLGVILYTLVSGSLPFD 214

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 17/209 (8%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G  GTV+K  +  + E+VA+K+       V   D D+      L+ E+  L  ++H
Sbjct: 9   KIGEGTYGTVFKAKNRETHEIVALKR-------VRLDDDDEGVPSSALR-EICLLKELKH 60
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           KNIV+L+    S     LV+E+  + +L          LD        F + +GL + H 
Sbjct: 61  KNIVRLHDVLHSDKKLTLVFEFC-DQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHS 119
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                ++HRD+K  N+L++ N + K+A+FG+A+   A G      +    T  Y  P+  
Sbjct: 120 ---RNVLHRDLKPQNLLINRNGELKLANFGLAR---AFGIPVRCYSAEVVTLWYRPPDVL 173
Query: 712 YSSK-ATTKCDVYSFGVVLMELITGRKPV 739
           + +K  +T  D++S G +  EL    +P+
Sbjct: 174 FGAKLYSTSIDMWSAGCIFAELANAGRPL 202

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 21/208 (10%)
Query: 538 GSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G   K+ L     +G+ VAVK +   +T++++S   +L        EV  +  + H N
Sbjct: 16  GKGNFAKVKLARHILTGKEVAVKII--DKTQLNSSSLQKLF------REVRIMKVLNHPN 67
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+    +     LV EY   G ++D L    V   W    +      Q ++ + +  
Sbjct: 68  IVKLFEVIETEKTLYLVMEYASGGEVFDYL----VAHGWMKEKEARAKFRQIVSAVQYCH 123
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K+ N+LLD +   K+ADFG +      G K  T     G+  Y APE    
Sbjct: 124 QKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDT---FCGSPPYAAPELFQG 179
Query: 714 SKATT-KCDVYSFGVVLMELITGRKPVE 740
            K    + DV+S GV+L  L++G  P +
Sbjct: 180 KKYDGPEVDVWSLGVILYTLVSGSLPFD 207

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 82  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGCLLKYIRKIGSFDETCTRFYT 138
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 139 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANS 193
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A+   D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 194 FVGTAQYVSPELLTEKSASKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 250

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 582 EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           E + +  + H   VKLY  F     LY  L    Y  NG L   + K     +  TR   
Sbjct: 79  ERDVMSRLDHPFFVKLYFTFQDDEKLYFGL---SYAKNGELLKYIRKIGSFDETCTRFYT 135
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           A  +   L YLH      IIHRD+K  NILL+ +   ++ DFG AKVL     K +    
Sbjct: 136 A-EIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-SKQARANS 190
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT  Y++PE      A    D+++ G ++ +L+ G  P       N+ +I+   IK++
Sbjct: 191 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLE 247

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 57/305 (18%)
Query: 518 SFDQREILEA-MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++D+ E+    +T K+K+G G  G VY+          V K +S    V     D ++++
Sbjct: 211 NYDKWEMERTDITMKHKLGGGQYGEVYE---------GVWKKYSLTVAVKTLKEDTMEVE 261
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-------GLVH 629
           + LK E   +  I+H N+V+L    +      ++ E+M  GNL D L +        +V 
Sbjct: 262 EFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL 320
Query: 630 LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
           L       +A  ++  + YL        IHR++ + N L+  N+  KVADFG+++++   
Sbjct: 321 L------YMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG- 370
Query: 690 GGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGD 745
                T T  AG      + APE    +K + K DV++FGV+L E+ T G  P     G 
Sbjct: 371 ----DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP---GI 423
Query: 746 NKNIIYWV---SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
           + + +Y +     +++  EG  E               +V  +   C   +P+ RP+  E
Sbjct: 424 DLSQVYELLEKDYRMERPEGCPE---------------KVYELMRACWQWNPSDRPSFAE 468
Query: 803 VVQLL 807
           + Q  
Sbjct: 469 IHQAF 473

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 95/216 (43%), Gaps = 30/216 (13%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           ++G+G   TVYK  L++   V V     Q  K++ S+  +       K E E L  ++H 
Sbjct: 33  EIGRGSFKTVYK-GLDTETTVEVAWCELQDRKLTKSERQRF------KEEAEXLKGLQHP 85
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALHKGLVH-----LDWPTRHKIAFGVA 643
           NIV+ Y  + S      C +LV E   +G L   L +  V        W  +      + 
Sbjct: 86  NIVRFYDSWESTVKGKKCIVLVTELXTSGTLKTYLKRFKVXKIKVLRSWCRQ------IL 139
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLD-VNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           +GL +LH     PIIHRD+K  NI +       K+ D G+A + +A     S    + GT
Sbjct: 140 KGLQFLH-TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA-----SFAKAVIGT 193
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
             + APE  Y  K     DVY+FG   +E  T   P
Sbjct: 194 PEFXAPE-XYEEKYDESVDVYAFGXCXLEXATSEYP 228

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 102/238 (42%), Gaps = 22/238 (9%)
Query: 511 VKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASD 569
           V S +R+  D  E +  +      G+G  G V    +  +G++ AVK L   +  V   D
Sbjct: 14  VNSSNRLGIDNFEFIRVL------GKGSFGKVMLARVKETGDLYAVKVL---KKDVILQD 64
Query: 570 TDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLV 628
            D     +   TE   L   R H  + +L+C F +      V E++  G+L   + K   
Sbjct: 65  DDV----ECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSR- 119
Query: 629 HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
             D       A  +   L +LH      II+RD+K  N+LLD     K+ADFG+ K    
Sbjct: 120 RFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176
Query: 689 RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
            G    TT    GT  Y+APE           D ++ GV+L E++ G  P E +  D+
Sbjct: 177 NG---VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD 231

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            ++G+G    V + + + +G+  A K + ++  K+SA D  +L+       E      ++
Sbjct: 10  EELGKGAFSVVRRCMKIPTGQEYAAKIINTK--KLSARDHQKLE------REARICRLLK 61
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H NIV+L+   S    + LV++ +  G L++     +V  ++ +    +  + Q L  ++
Sbjct: 62  HPNIVRLHDSISEEGFHYLVFDLVTGGELFE----DIVAREYYSEADASHCIQQILESVN 117
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           H  L+ I+HRD+K  N+LL    +    K+ADFG+A  +Q   G        AGT GYL+
Sbjct: 118 HCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQ---GDQQAWFGFAGTPGYLS 174
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           PE           D+++ GV+L  L+ G  P  D+
Sbjct: 175 PEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDE 209

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 21/208 (10%)
Query: 538 GSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G   K+ L     +G+ VAVK +   +T++++S   +L        EV  +  + H N
Sbjct: 23  GKGNFAKVKLARHILTGKEVAVKII--DKTQLNSSSLQKLF------REVRIMKVLNHPN 74
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+    +     LV EY   G ++D L       +   R K    +   + Y H   
Sbjct: 75  IVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFR-QIVSAVQYCHQKF 133
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K+ N+LLD +   K+ADFG +         D+      G   Y APE    
Sbjct: 134 ---IVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDA----FCGAPPYAAPELFQG 186
Query: 714 SKATT-KCDVYSFGVVLMELITGRKPVE 740
            K    + DV+S GV+L  L++G  P +
Sbjct: 187 KKYDGPEVDVWSLGVILYTLVSGSLPFD 214

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 84/169 (49%), Gaps = 19/169 (11%)
Query: 582 EVETLGNIRHKNIVKLYC---YFSSLYCNL-LVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
           EV +L  ++H+NI++        +S+  +L L+  +   G+L D L   +V   W     
Sbjct: 68  EVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVV--SWNELCH 125
Query: 638 IAFGVAQGLAYLHH-------GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
           IA  +A+GLAYLH        G    I HRDIKS N+LL  N    +ADFG+A   +A G
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEA-G 184
Query: 691 GKDSTTTVIAGTYGYLAPEYA-----YSSKATTKCDVYSFGVVLMELIT 734
                T    GT  Y+APE       +   A  + D+Y+ G+VL EL +
Sbjct: 185 KSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS 233

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 14/202 (6%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G   TVYK  D N+ ++VA+KK+     K+      +  +++    E++ L  + H 
Sbjct: 18  LGEGQFATVYKARDKNTNQIVAIKKI-----KLGHRSEAKDGINRTALREIKLLQELSHP 72
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI+ L   F       LV+++M   +L   +    + L             QGL YLH  
Sbjct: 73  NIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH 131
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               I+HRD+K  N+LLD N   K+ADFG+AK     G  +        T  Y APE  +
Sbjct: 132 W---ILHRDLKPNNLLLDENGVLKLADFGLAKSF---GSPNRAYXHQVVTRWYRAPELLF 185
Query: 713 SSKA-TTKCDVYSFGVVLMELI 733
            ++      D+++ G +L EL+
Sbjct: 186 GARMYGVGVDMWAVGCILAELL 207

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 30/228 (13%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           QR +   +T    VG+G  G V++     GE VAVK ++S R + S             +
Sbjct: 32  QRTVARQITLLECVGKGRYGEVWRGSWQ-GENVAVK-IFSSRDEKSWFR----------E 79
Query: 581 TEVETLGNIRHKNIVKLYCY-FSSLYCN---LLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           TE+     +RH+NI+       +S + +    L+  Y   G+L+D L   L  LD  +  
Sbjct: 80  TELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ--LTTLDTVSCL 137
Query: 637 KIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVL-QARG 690
           +I   +A GLA+LH  +        I HRD+KS NIL+  N Q  +AD G+A +  Q+  
Sbjct: 138 RIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTN 197
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSS------KATTKCDVYSFGVVLMEL 732
             D       GT  Y+APE    +       +  + D+++FG+VL E+
Sbjct: 198 QLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEV 245

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            ++G+G    V + + + +G+  A K + ++  K+SA D  +L+       E      ++
Sbjct: 10  EELGKGAFSVVRRCMKIPTGQEYAAKIINTK--KLSARDHQKLE------REARICRLLK 61
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H NIV+L+   S    + LV++ +  G L++     +V  ++ +    +  + Q L  ++
Sbjct: 62  HPNIVRLHDSISEEGFHYLVFDLVTGGELFE----DIVAREYYSEADASHCIQQILESVN 117
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           H  L+ I+HRD+K  N+LL    +    K+ADFG+A  +Q   G        AGT GYL+
Sbjct: 118 HCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQ---GDQQAWFGFAGTPGYLS 174
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           PE           D+++ GV+L  L+ G  P  D+
Sbjct: 175 PEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDE 209

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 538 GSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G   K+ L     +G+ VAV+ +   +T++++S   +L        EV  +  + H N
Sbjct: 23  GKGNFAKVKLARHILTGKEVAVRII--DKTQLNSSSLQKLF------REVRIMKVLNHPN 74
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+    +     LV EY   G ++D L       +   R K    +   + Y H   
Sbjct: 75  IVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFR-QIVSAVQYCHQKF 133
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K+ N+LLD +   K+ADFG +      G K  T     G+  Y APE    
Sbjct: 134 ---IVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDT---FCGSPPYAAPELFQG 186
Query: 714 SKATT-KCDVYSFGVVLMELITGRKPVE 740
            K    + DV+S GV+L  L++G  P +
Sbjct: 187 KKYDGPEVDVWSLGVILYTLVSGSLPFD 214

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 30/228 (13%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           QR +   +T    VG+G  G V++     GE VAVK ++S R + S             +
Sbjct: 3   QRTVAHQITLLECVGKGRYGEVWRGSWQ-GENVAVK-IFSSRDEKSWFR----------E 50
Query: 581 TEVETLGNIRHKNIVKLYCY-FSSLYCN---LLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           TE+     +RH+NI+       +S + +    L+  Y   G+L+D L   L  LD  +  
Sbjct: 51  TELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ--LTTLDTVSCL 108
Query: 637 KIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVL-QARG 690
           +I   +A GLA+LH  +        I HRD+KS NIL+  N Q  +AD G+A +  Q+  
Sbjct: 109 RIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTN 168
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSS------KATTKCDVYSFGVVLMEL 732
             D       GT  Y+APE    +       +  + D+++FG+VL E+
Sbjct: 169 QLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEV 216

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 132/303 (43%), Gaps = 52/303 (17%)
Query: 516 RISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           R   D  E+ E + E   +G G  G VYK        +A  K+   +++    D      
Sbjct: 4   RRDLDPNEVWEIVGE---LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELED------ 54
Query: 576 DKGLKTEVETLGNIRHKNIVKL---YCYFSSLYCNLLVYEYMPNGNLWDA----LHKGLV 628
                 E+E L    H  IVKL   Y +   L+   ++ E+ P G + DA    L +GL 
Sbjct: 55  ---YIVEIEILATCDHPYIVKLLGAYYHDGKLW---IMIEFCPGGAV-DAIMLELDRGLT 107
Query: 629 HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI-AKVLQ 687
               P    +   + + L +LH      IIHRD+K+ N+L+ +    ++ADFG+ AK L+
Sbjct: 108 E---PQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLK 161
Query: 688 ARGGKDSTTTVIAGTYGYLAPEYAYSSKATT-----KCDVYSFGVVLMELITGRKPVEDD 742
               +DS      GT  ++APE              K D++S G+ L+E+    +P   +
Sbjct: 162 TLQKRDS----FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEM-AQIEPPHHE 216
Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
               +     V +K+   +    +   K S  FRD     L+IA+    K+P TRP+  +
Sbjct: 217 LNPMR-----VLLKIAKSDPPTLLTPSKWSVEFRD----FLKIAL---DKNPETRPSAAQ 264
Query: 803 VVQ 805
           +++
Sbjct: 265 LLE 267

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 21/208 (10%)
Query: 538 GSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G   K+ L     +G+ VAV+ +   +T++++S   +L        EV  +  + H N
Sbjct: 23  GKGNFAKVKLARHILTGKEVAVRII--DKTQLNSSSLQKLF------REVRIMKVLNHPN 74
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+    +     LV EY   G ++D L       +   R K    +   + Y H   
Sbjct: 75  IVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFR-QIVSAVQYCHQKF 133
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K+ N+LLD +   K+ADFG +         D       G+  Y APE    
Sbjct: 134 ---IVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDE----FCGSPPYAAPELFQG 186
Query: 714 SKATT-KCDVYSFGVVLMELITGRKPVE 740
            K    + DV+S GV+L  L++G  P +
Sbjct: 187 KKYDGPEVDVWSLGVILYTLVSGSLPFD 214

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 48/230 (20%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +GQG  G V K  +       A+KK+     K+S            + +EV  L ++ H+
Sbjct: 14  LGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLST-----------ILSEVMLLASLNHQ 62
Query: 593 NIVKLYCYF----------------SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
            +V+ Y  +                S+L+  +   EY  NG L+D +H   ++       
Sbjct: 63  YVVRYYAAWLERRNFVKPMTAVKKKSTLFIQM---EYCENGTLYDLIHSENLNQQRDEYW 119
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR------- 689
           ++   + + L+Y+H      IIHRD+K  NI +D +   K+ DFG+AK +          
Sbjct: 120 RLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLD 176
Query: 690 -----GGKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELI 733
                G  D+ T+ I GT  Y+A E    +     K D+YS G++  E+I
Sbjct: 177 SQNLPGSSDNLTSAI-GTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI 225

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 18/215 (8%)
Query: 531 KNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +  +G+G  G V       + + VA+K +  Q  K S        +   ++ E+  L  +
Sbjct: 14  RETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKS-------DMHMRVEREISYLKLL 66
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           RH +I+KLY   ++    ++V EY   G L+D + +     +   R +    +   + Y 
Sbjct: 67  RHPHIIKLYDVITTPTDIVMVIEY-AGGELFDYIVEKKRMTEDEGR-RFFQQIICAIEYC 124
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H      I+HRD+K  N+LLD N   K+ADFG++ ++    G    T+   G+  Y APE
Sbjct: 125 HR---HKIVHRDLKPENLLLDDNLNVKIADFGLSNIMT--DGNFLKTS--CGSPNYAAPE 177
Query: 710 YAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDF 743
                  A  + DV+S G+VL  ++ GR P +D+F
Sbjct: 178 VINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEF 212

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 30/228 (13%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           QR +   +T    VG+G  G V++     GE VAVK ++S R + S             +
Sbjct: 3   QRTVARDITLLECVGKGRYGEVWRGSWQ-GENVAVK-IFSSRDEKSWFR----------E 50
Query: 581 TEVETLGNIRHKNIVKLYCY-FSSLYCN---LLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           TE+     +RH+NI+       +S + +    L+  Y   G+L+D L   L  LD  +  
Sbjct: 51  TELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ--LTTLDTVSCL 108
Query: 637 KIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVL-QARG 690
           +I   +A GLA+LH  +        I HRD+KS NIL+  N Q  +AD G+A +  Q+  
Sbjct: 109 RIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTN 168
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSS------KATTKCDVYSFGVVLMEL 732
             D       GT  Y+APE    +       +  + D+++FG+VL E+
Sbjct: 169 QLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEV 216

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 132/303 (43%), Gaps = 52/303 (17%)
Query: 516 RISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           R   D  E+ E + E   +G G  G VYK        +A  K+   +++    D      
Sbjct: 12  RRDLDPNEVWEIVGE---LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELED------ 62
Query: 576 DKGLKTEVETLGNIRHKNIVKL---YCYFSSLYCNLLVYEYMPNGNLWDA----LHKGLV 628
                 E+E L    H  IVKL   Y +   L+   ++ E+ P G + DA    L +GL 
Sbjct: 63  ---YIVEIEILATCDHPYIVKLLGAYYHDGKLW---IMIEFCPGGAV-DAIMLELDRGLT 115
Query: 629 HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI-AKVLQ 687
               P    +   + + L +LH      IIHRD+K+ N+L+ +    ++ADFG+ AK L+
Sbjct: 116 E---PQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLK 169
Query: 688 ARGGKDSTTTVIAGTYGYLAPEYAYSSKATT-----KCDVYSFGVVLMELITGRKPVEDD 742
               +DS      GT  ++APE              K D++S G+ L+E+    +P   +
Sbjct: 170 TLQKRDS----FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEM-AQIEPPHHE 224
Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
               +     V +K+   +    +   K S  FRD     L+IA+    K+P TRP+  +
Sbjct: 225 LNPMR-----VLLKIAKSDPPTLLTPSKWSVEFRD----FLKIAL---DKNPETRPSAAQ 272
Query: 803 VVQ 805
           +++
Sbjct: 273 LLE 275

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 16/209 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G    V  + L   + +   K+  +       D D +Q +K +    E   N  H  
Sbjct: 28  IGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHV---FEQASN--HPF 82
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA--YLHH 651
           +V L+  F +      V EY+  G+L   + +       P  H   +     LA  YLH 
Sbjct: 83  LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR---QRKLPEEHARFYSAEISLALNYLHE 139
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD     K+ D+G+ K     G    TT+   GT  Y+APE  
Sbjct: 140 ---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG---DTTSXFCGTPNYIAPEIL 193
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVE 740
                    D ++ GV++ E++ GR P +
Sbjct: 194 RGEDYGFSVDWWALGVLMFEMMAGRSPFD 222

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 16/209 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G    V  + L   + +   K+  +       D D +Q +K +    E   N  H  
Sbjct: 13  IGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHV---FEQASN--HPF 67
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA--YLHH 651
           +V L+  F +      V EY+  G+L   + +       P  H   +     LA  YLH 
Sbjct: 68  LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR---QRKLPEEHARFYSAEISLALNYLHE 124
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD     K+ D+G+ K     G    TT+   GT  Y+APE  
Sbjct: 125 ---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG---DTTSXFCGTPNYIAPEIL 178
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVE 740
                    D ++ GV++ E++ GR P +
Sbjct: 179 RGEDYGFSVDWWALGVLMFEMMAGRSPFD 207

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 538 GSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G   K+ L     +G+ VAVK +   +T++++S   +L        EV     + H N
Sbjct: 23  GKGNFAKVKLARHILTGKEVAVKII--DKTQLNSSSLQKLF------REVRIXKVLNHPN 74
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           IVKL+    +     LV EY   G ++D L       +   R K    +   + Y H   
Sbjct: 75  IVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHGRXKEKEARAKFR-QIVSAVQYCHQKF 133
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K+ N+LLD +   K+ADFG +         D+      G   Y APE    
Sbjct: 134 ---IVHRDLKAENLLLDADXNIKIADFGFSNEFTFGNKLDA----FCGAPPYAAPELFQG 186
Query: 714 SKATT-KCDVYSFGVVLMELITGRKPVE 740
            K    + DV+S GV+L  L++G  P +
Sbjct: 187 KKYDGPEVDVWSLGVILYTLVSGSLPFD 214

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 16/209 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G    V  + L   + +   K+  +       D D +Q +K +  +        H  
Sbjct: 17  IGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASN-----HPF 71
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA--YLHH 651
           +V L+  F +      V EY+  G+L   + +       P  H   +     LA  YLH 
Sbjct: 72  LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR---QRKLPEEHARFYSAEISLALNYLHE 128
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD     K+ D+G+ K     G    TT+   GT  Y+APE  
Sbjct: 129 ---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG---DTTSXFCGTPNYIAPEIL 182
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVE 740
                    D ++ GV++ E++ GR P +
Sbjct: 183 RGEDYGFSVDWWALGVLMFEMMAGRSPFD 211

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 119/287 (41%), Gaps = 70/287 (24%)
Query: 531 KNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTK-VSASDTDQLQLDKGLKTEVETLGN 588
           K  +GQG  G V   I+  +  + A+K +   + + ++  D +++      KTEV  +  
Sbjct: 31  KGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERI------KTEVRLMKK 84
Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH------------------------ 624
           + H NI +LY  +       LV E    G+L D L+                        
Sbjct: 85  LHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPE 144
Query: 625 ------KGLVH-----LDWPTRHKIAFGVAQ----GLAYLHHGLLSPIIHRDIKSTNILL 669
                  G +H     LD+  R K+   + +     L YLH+     I HRDIK  N L 
Sbjct: 145 CNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHN---QGICHRDIKPENFLF 201
Query: 670 DVN--YQPKVADFGIAK-VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT--KCDVYS 724
             N  ++ K+ DFG++K   +   G+    T  AGT  ++APE   ++  +   KCD +S
Sbjct: 202 STNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWS 261
Query: 725 FGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKL 771
            GV+L  L+ G  P                  V+  + I +VL+KKL
Sbjct: 262 AGVLLHLLLMGAVPFPG---------------VNDADTISQVLNKKL 293

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 15/192 (7%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYE 612
           VA+K L S  T+    D           +E   +G   H N++ L    +     +++ E
Sbjct: 38  VAIKTLKSGYTEKQRRD---------FLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITE 88
Query: 613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN 672
           +M NG+L   L +            +  G+A G+ YL        +HR + + NIL++ N
Sbjct: 89  FMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRALAARNILVNSN 145
Query: 673 YQPKVADFGIAKVLQARGGKDSTTTVIAGT--YGYLAPEYAYSSKATTKCDVYSFGVVLM 730
              KV+DFG+++ L+      + T+ + G     + APE     K T+  DV+S+G+V+ 
Sbjct: 146 LVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMW 205
Query: 731 ELIT-GRKPVED 741
           E+++ G +P  D
Sbjct: 206 EVMSYGERPYWD 217

>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound To Ldn- 193189 Length = 305

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 105/230 (45%), Gaps = 34/230 (14%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           QR +   +     VG+G  G V++  L  GE VAVK ++S R + S             +
Sbjct: 3   QRTVARQVALVECVGKGRYGEVWR-GLWHGESVAVK-IFSSRDEQSWFR----------E 50
Query: 581 TEVETLGNIRHKNIVKLYCY----FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           TE+     +RH NI+          +S     L+  Y  +G+L+D L +  +      R 
Sbjct: 51  TEIYNTVLLRHDNILGFIASDMTSRNSSTQLWLITHYHEHGSLYDFLQRQTLEPHLALR- 109
Query: 637 KIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
            +A   A GLA+LH  +        I HRD KS N+L+  N Q  +AD G+A V+ ++G 
Sbjct: 110 -LAVSAACGLAHLHVEIFGTQGKPAIAHRDFKSRNVLVKSNLQCCIADLGLA-VMHSQGS 167
Query: 692 K--DSTTTVIAGTYGYLAPEYAYSSKATTKC-------DVYSFGVVLMEL 732
              D       GT  Y+APE     +  T C       D+++FG+VL E+
Sbjct: 168 DYLDIGNNPRVGTKRYMAPE-VLDEQIRTDCFESYKWTDIWAFGLVLWEI 216

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 54  TESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA- 112
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            +   L YLH      +++RDIK  N++LD +   K+ DFG+ K   + G   +T     
Sbjct: 113 EIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG---ATMKTFC 166
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 167 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 57  TESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA- 115
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            +   L YLH      +++RDIK  N++LD +   K+ DFG+ K   + G   +T     
Sbjct: 116 EIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG---ATMKTFC 169
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 170 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 207

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           ++G G  G VYK       V+A  K+   +++    D            E++ L +  H 
Sbjct: 44  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELED---------YMVEIDILASCDHP 94
Query: 593 NIVKL---YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP-TRHKIAFGVAQGLAY 648
           NIVKL   + Y ++L+   ++ E+   G    A+   ++ L+ P T  +I     Q L  
Sbjct: 95  NIVKLLDAFYYENNLW---ILIEFCAGG----AVDAVMLELERPLTESQIQVVCKQTLDA 147
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI-AKVLQARGGKDSTTTVIAGTYGYLA 707
           L++   + IIHRD+K+ NIL  ++   K+ADFG+ AK  +    +DS      GT  ++A
Sbjct: 148 LNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS----FIGTPYWMA 203
Query: 708 PEYAYSSKATT-----KCDVYSFGVVLMELITGRKP 738
           PE      +       K DV+S G+ L+E+     P
Sbjct: 204 PEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 16/209 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G    V  + L   + +   ++  +       D D +Q +K +    E   N  H  
Sbjct: 60  IGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHV---FEQASN--HPF 114
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA--YLHH 651
           +V L+  F +      V EY+  G+L   + +       P  H   +     LA  YLH 
Sbjct: 115 LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR---QRKLPEEHARFYSAEISLALNYLHE 171
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD     K+ D+G+ K     G    TT+   GT  Y+APE  
Sbjct: 172 ---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG---DTTSTFCGTPNYIAPEIL 225
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVE 740
                    D ++ GV++ E++ GR P +
Sbjct: 226 RGEDYGFSVDWWALGVLMFEMMAGRSPFD 254

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 59  TESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA- 117
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            +   L YLH      +++RDIK  N++LD +   K+ DFG+ K   + G   +T     
Sbjct: 118 EIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG---ATMKXFC 171
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 172 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 209

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 54  TESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA- 112
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            +   L YLH      +++RDIK  N++LD +   K+ DFG+ K   + G   +T     
Sbjct: 113 EIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG---ATMKXFC 166
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 167 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 54  TESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA- 112
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            +   L YLH      +++RDIK  N++LD +   K+ DFG+ K   + G   +T     
Sbjct: 113 EIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG---ATMKTFC 166
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 167 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 132/302 (43%), Gaps = 47/302 (15%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K ++G+G  G V+  +  +      K L + +T   ASD  +    K    E E L N++
Sbjct: 18  KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNAR----KDFHREAELLTNLQ 73
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKG------LVHLDWPTRH------KI 638
           H++IVK Y         ++V+EYM +G+L   L         +   + PT         I
Sbjct: 74  HEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHI 133
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA----RGGKDS 694
           A  +A G+ YL        +HRD+ + N L+  N   K+ DFG+++ + +    R G  +
Sbjct: 134 AQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHT 190
Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWV 753
              +      ++ PE     K TT+ DV+S GVVL E+ T G++P             W 
Sbjct: 191 MLPI-----RWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQP-------------WY 232
Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT---MNEVVQLLAEA 810
             ++   E I  +   ++    R    +V  + + C  + P  R     ++ ++Q LA+A
Sbjct: 233 --QLSNNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290
Query: 811 DP 812
            P
Sbjct: 291 SP 292

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 54  TESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA- 112
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            +   L YLH      +++RDIK  N++LD +   K+ DFG+ K   + G   +T     
Sbjct: 113 EIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG---ATMKXFC 166
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 167 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           ++G G  G VYK       V+A  K+   +++    D            E++ L +  H 
Sbjct: 44  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELED---------YMVEIDILASCDHP 94
Query: 593 NIVKL---YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP-TRHKIAFGVAQGLAY 648
           NIVKL   + Y ++L+   ++ E+   G    A+   ++ L+ P T  +I     Q L  
Sbjct: 95  NIVKLLDAFYYENNLW---ILIEFCAGG----AVDAVMLELERPLTESQIQVVCKQTLDA 147
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI-AKVLQARGGKDSTTTVIAGTYGYLA 707
           L++   + IIHRD+K+ NIL  ++   K+ADFG+ AK  +    +DS      GT  ++A
Sbjct: 148 LNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQRRDS----FIGTPYWMA 203
Query: 708 PEYAYSSKATT-----KCDVYSFGVVLMELITGRKP 738
           PE      +       K DV+S G+ L+E+     P
Sbjct: 204 PEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 46/233 (19%)
Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           E + +  ++G+G  G+V K +   SG+++AVK++   R+ V   +  QL +D  +     
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRI---RSTVDEKEQKQLLMDLDVV---- 74
Query: 585 TLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH-------- 636
               +R  +   +  ++ +L+           G+ W  +       D   ++        
Sbjct: 75  ----MRSSDCPYIVQFYGALF---------REGDCWICMELMSTSFDKFYKYVYSVLDDV 121
Query: 637 -------KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
                  KI     + L +L   L   IIHRDIK +NILLD +   K+ DFGI+  L   
Sbjct: 122 IPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDS 179
Query: 690 GGKDSTTTVIAGTYGYLAPEYAYSSKA----TTKCDVYSFGVVLMELITGRKP 738
             K    T  AG   Y+APE    S +      + DV+S G+ L EL TGR P
Sbjct: 180 IAK----TRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFP 228

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EYMP G+++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYMPGGDMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     KVADFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 54  TESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA- 112
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            +   L YLH      +++RDIK  N++LD +   K+ DFG+ K   + G   +T     
Sbjct: 113 EIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG---ATMKXFC 166
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 167 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EYMP G+++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYMPGGDMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     KVADFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 30/216 (13%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  GTV+K + +  GE + +          S   + Q   D  L      +G++ H 
Sbjct: 39  LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHML-----AIGSLDHA 93
Query: 593 NIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWPTRHKIAFGVAQ 644
           +IV+L   C  SSL    LV +Y+P G+L D +  H+G +     L+W  +      +A+
Sbjct: 94  HIVRLLGLCPGSSLQ---LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQ------IAK 144
Query: 645 GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           G+ YL  HG+    +HR++ + N+LL    Q +VADFG+A +L     K    +      
Sbjct: 145 GMYYLEEHGM----VHRNLAARNVLLKSPSQVQVADFGVADLLPP-DDKQLLYSEAKTPI 199
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
            ++A E  +  K T + DV+S+GV + EL+T G +P
Sbjct: 200 KWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEP 235

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 111/252 (44%), Gaps = 38/252 (15%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V K  D  + +  AVK +     K SA + D   + +    EVE L  + H 
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVI----NKASAKNKDTSTILR----EVELLKKLDHP 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI+KL+          +V E    G L+D + K           +I   V  G+ Y+H  
Sbjct: 82  NIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHK- 139
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
               I+HRD+K  NILL+   +    K+ DFG++   Q    +++      GT  Y+APE
Sbjct: 140 --HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ----QNTKMKDRIGTAYYIAPE 193
Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII--------------YWVSI 755
                    KCDV+S GV+L  L++G  P    +G N+  I               W +I
Sbjct: 194 -VLRGTYDEKCDVWSAGVILYILLSGTPPF---YGKNEYDILKRVETGKYAFDLPQWRTI 249
Query: 756 KVDTKEGIMEVL 767
             D K+ I ++L
Sbjct: 250 SDDAKDLIRKML 261

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 111/252 (44%), Gaps = 38/252 (15%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V K  D  + +  AVK +     K SA + D   + +    EVE L  + H 
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVI----NKASAKNKDTSTILR----EVELLKKLDHP 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI+KL+          +V E    G L+D + K           +I   V  G+ Y+H  
Sbjct: 82  NIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHK- 139
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
               I+HRD+K  NILL+   +    K+ DFG++   Q    +++      GT  Y+APE
Sbjct: 140 --HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ----QNTKMKDRIGTAYYIAPE 193
Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII--------------YWVSI 755
                    KCDV+S GV+L  L++G  P    +G N+  I               W +I
Sbjct: 194 -VLRGTYDEKCDVWSAGVILYILLSGTPPF---YGKNEYDILKRVETGKYAFDLPQWRTI 249
Query: 756 KVDTKEGIMEVL 767
             D K+ I ++L
Sbjct: 250 SDDAKDLIRKML 261

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 31  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 82  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 141
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 142 S---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 198
Query: 711 AYSSKATTK-CDVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 199 MLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 31  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 82  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 141
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 142 S---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 198
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 199 MLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 13/182 (7%)
Query: 564 KVSASDTDQLQLD----KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNL 619
           +V+    D+ QL+    + L  EV  +  + H NIVKL+    +     LV EY   G +
Sbjct: 42  EVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEV 101
Query: 620 WDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD 679
           +D L       +   R K    +   + Y H      I+HRD+K+ N+LLD +   K+AD
Sbjct: 102 FDYLVAHGRMKEKEARAKFR-QIVSAVQYCHQKY---IVHRDLKAENLLLDGDMNIKIAD 157
Query: 680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT-KCDVYSFGVVLMELITGRKP 738
           FG +      G K  T     G+  Y APE     K    + DV+S GV+L  L++G  P
Sbjct: 158 FGFSNEFTV-GNKLDT---FCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 213
Query: 739 VE 740
            +
Sbjct: 214 FD 215

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 88/213 (41%), Gaps = 17/213 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  +   S   V   KL S+   +  SD+           E + +       
Sbjct: 77  IGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDS------AFFWEERDIMAFANSPW 130
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +V+L+  F       +V EYMP G+L + +    V   W   +     V   L  +H   
Sbjct: 131 VVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAE--VVLALDAIHS-- 186
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
               IHRD+K  N+LLD +   K+ADFG    +   G     T V  GT  Y++PE   S
Sbjct: 187 -MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAV--GTPDYISPEVLKS 243
Query: 714 SKAT----TKCDVYSFGVVLMELITGRKPVEDD 742
                    +CD +S GV L E++ G  P   D
Sbjct: 244 QGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD 276

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 44/235 (18%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           QR I   +  +  +G+G  G V++     GE VAVK ++S R + S             +
Sbjct: 37  QRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVK-IFSSREERSWFR----------E 84
Query: 581 TEVETLGNIRHKNIVKLYCY-------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
            E+     +RH+NI+            ++ L+   LV +Y  +G+L+D L++  V ++  
Sbjct: 85  AEIYQTVMLRHENILGFIAADNKDNGTWTQLW---LVSDYHEHGSLFDYLNRYTVTVEGM 141
Query: 634 TRHKIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
              K+A   A GLA+LH  ++       I HRD+KS NIL+  N    +AD G+A     
Sbjct: 142 I--KLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA----V 195
Query: 689 RGGKDSTTTVIA-----GTYGYLAPEYAYSS------KATTKCDVYSFGVVLMEL 732
           R    + T  IA     GT  Y+APE    S      ++  + D+Y+ G+V  E+
Sbjct: 196 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI 250

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 88/213 (41%), Gaps = 17/213 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  +   S   V   KL S+   +  SD+           E + +       
Sbjct: 82  IGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDS------AFFWEERDIMAFANSPW 135
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +V+L+  F       +V EYMP G+L + +    V   W   +     V   L  +H   
Sbjct: 136 VVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAE--VVLALDAIHS-- 191
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
               IHRD+K  N+LLD +   K+ADFG    +   G     T V  GT  Y++PE   S
Sbjct: 192 -MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAV--GTPDYISPEVLKS 248
Query: 714 SKAT----TKCDVYSFGVVLMELITGRKPVEDD 742
                    +CD +S GV L E++ G  P   D
Sbjct: 249 QGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD 281

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 30/216 (13%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  GTV+K + +  GE + +          S   + Q   D  L      +G++ H 
Sbjct: 21  LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHML-----AIGSLDHA 75
Query: 593 NIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWPTRHKIAFGVAQ 644
           +IV+L   C  SSL    LV +Y+P G+L D +  H+G +     L+W  +      +A+
Sbjct: 76  HIVRLLGLCPGSSLQ---LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQ------IAK 126
Query: 645 GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           G+ YL  HG+    +HR++ + N+LL    Q +VADFG+A +L     K    +      
Sbjct: 127 GMYYLEEHGM----VHRNLAARNVLLKSPSQVQVADFGVADLLPP-DDKQLLYSEAKTPI 181
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
            ++A E  +  K T + DV+S+GV + EL+T G +P
Sbjct: 182 KWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEP 217

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALH-KGLVHLDWPTRHKI 638
            E   +  +RH N+V+L          L +V EYM  G+L D L  +G   L      K 
Sbjct: 63  AEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 122
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +  V + + YL     +  +HRD+ + N+L+  +   KV+DFG+ K  +A   +D+    
Sbjct: 123 SLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK--EASSTQDTGKLP 177
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           +  T    APE     K +TK DV+SFG++L E+ + GR P
Sbjct: 178 VKWT----APEALREKKFSTKSDVWSFGILLWEIYSFGRVP 214

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 31  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 82  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 141
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 142 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 198
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 199 MLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 31  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 82  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 141
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 142 S---ANVLHRDLKPSNLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 198
Query: 711 AYSSKATTK-CDVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 199 MLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 122/285 (42%), Gaps = 43/285 (15%)
Query: 532 NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            ++G G  G V+K+    +G V+AVK++     K   +    + LD  LK+         
Sbjct: 31  GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNK-EENKRILMDLDVVLKS--------- 80
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMP-NGNLWDALHKGLVHLDWPTR--HKIAFGVAQGLA 647
           H     + C F +   N  V+  M   G   + L K +     P R   K+   + + L 
Sbjct: 81  HDCPYIVQC-FGTFITNTDVFIAMELMGTCAEKLKKRM-QGPIPERILGKMTVAIVKALY 138
Query: 648 YLH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           YL   HG    +IHRD+K +NILLD   Q K+ DFGI+  L     KD +    AG   Y
Sbjct: 139 YLKEKHG----VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRS----AGCAAY 190
Query: 706 LAPEYAYSSKATT-----KCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK 760
           +APE       T      + DV+S G+ L+EL TG+ P +     N    + V  KV  +
Sbjct: 191 MAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYK-----NCKTDFEVLTKVLQE 245
Query: 761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           E  +       SG F+            C +K    RP  N++++
Sbjct: 246 EPPLLPGHMGFSGDFQS-------FVKDCLTKDHRKRPKYNKLLE 283

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALH-KGLVHLDWPTRHKI 638
            E   +  +RH N+V+L          L +V EYM  G+L D L  +G   L      K 
Sbjct: 48  AEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 107
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +  V + + YL     +  +HRD+ + N+L+  +   KV+DFG+ K  +A   +D+    
Sbjct: 108 SLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK--EASSTQDTGKLP 162
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           +  T    APE     K +TK DV+SFG++L E+ + GR P
Sbjct: 163 VKWT----APEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G  G V+ +   SG      KL++ +    A+   + +  +  +TE + L +IR   
Sbjct: 62  LGTGAYGKVFLVRKISGHDTG--KLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSP 119
Query: 594 -IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            +V L+  F +     L+ +Y+  G L+  L +     +  T H++   V + +  L H 
Sbjct: 120 FLVTLHYAFQTETKLHLILDYINGGELFTHLSQ----RERFTEHEVQIYVGEIVLALEHL 175
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV--IAGTYGYLAPEY 710
               II+RDIK  NILLD N    + DFG++K   A    D T       GT  Y+AP+ 
Sbjct: 176 HKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVA----DETERAYDFCGTIEYMAPDI 231
Query: 711 AY--SSKATTKCDVYSFGVVLMELITGRKP 738
                S      D +S GV++ EL+TG  P
Sbjct: 232 VRGGDSGHDKAVDWWSLGVLMYELLTGASP 261

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 33  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 83
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 84  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 143
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 144 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 200
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 201 MLNSKGYTKSIDIWSVGCILAEMLSNR 227

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 88/213 (41%), Gaps = 17/213 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  +   S   V   KL S+   +  SD+           E + +       
Sbjct: 82  IGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDS------AFFWEERDIMAFANSPW 135
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +V+L+  F       +V EYMP G+L + +    V   W   +     V   L  +H   
Sbjct: 136 VVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAE--VVLALDAIHS-- 191
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
               IHRD+K  N+LLD +   K+ADFG    +   G     T V  GT  Y++PE   S
Sbjct: 192 -MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAV--GTPDYISPEVLKS 248
Query: 714 SKAT----TKCDVYSFGVVLMELITGRKPVEDD 742
                    +CD +S GV L E++ G  P   D
Sbjct: 249 QGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD 281

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 18/212 (8%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V    +  + + VA+K +  ++  + ++      L+  ++TE+E L  + H 
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALN--VETEIEILKKLNHP 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            I+K+  +F +     +V E M  G L+D +  G   L   T     + +   + YLH  
Sbjct: 76  CIIKIKNFFDA-EDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLAVQYLHE- 132
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
             + IIHRD+K  N+LL    +    K+ DFG +K+L    G+ S    + GT  YLAPE
Sbjct: 133 --NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL----GETSLMRTLCGTPTYLAPE 186
Query: 710 YAYS---SKATTKCDVYSFGVVLMELITGRKP 738
              S   +      D +S GV+L   ++G  P
Sbjct: 187 VLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 218

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 18/212 (8%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V    +  + + VA+K +  ++  + ++      L+  ++TE+E L  + H 
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALN--VETEIEILKKLNHP 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            I+K+  +F +     +V E M  G L+D +  G   L   T     + +   + YLH  
Sbjct: 76  CIIKIKNFFDA-EDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLAVQYLHE- 132
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
             + IIHRD+K  N+LL    +    K+ DFG +K+L    G+ S    + GT  YLAPE
Sbjct: 133 --NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL----GETSLMRTLCGTPTYLAPE 186
Query: 710 YAYS---SKATTKCDVYSFGVVLMELITGRKP 738
              S   +      D +S GV+L   ++G  P
Sbjct: 187 VLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 218

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 18/212 (8%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V    +  + + VA+K +  ++  + ++      L+  ++TE+E L  + H 
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALN--VETEIEILKKLNHP 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            I+K+  +F +     +V E M  G L+D +  G   L   T     + +   + YLH  
Sbjct: 76  CIIKIKNFFDA-EDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLAVQYLHE- 132
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
             + IIHRD+K  N+LL    +    K+ DFG +K+L    G+ S    + GT  YLAPE
Sbjct: 133 --NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL----GETSLMRTLCGTPTYLAPE 186
Query: 710 YAYS---SKATTKCDVYSFGVVLMELITGRKP 738
              S   +      D +S GV+L   ++G  P
Sbjct: 187 VLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 218

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 22/230 (9%)
Query: 511 VKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASD 569
            K  HR++ ++ E L+ +      G+G  G V  + +  +G   A+K L  ++  + A D
Sbjct: 142 AKPKHRVTMNEFEYLKLL------GKGTFGKVILVKEKATGRYYAMKIL--KKEVIVAKD 193
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH 629
                L     TE   L N RH  +  L   F +      V EY   G L+  L +  V 
Sbjct: 194 EVAHTL-----TENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVF 248
Query: 630 LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
            +   R   A  +   L YLH      +++RD+K  N++LD +   K+ DFG+ K     
Sbjct: 249 SEDRARFYGA-EIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCK----E 301
Query: 690 GGKD-STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           G KD +T     GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 302 GIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 351

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 44/235 (18%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           QR I   +  +  +G+G  G V++     GE VAVK ++S R + S             +
Sbjct: 24  QRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVK-IFSSREERSWFR----------E 71
Query: 581 TEVETLGNIRHKNIVKLYCY-------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
            E+     +RH+NI+            ++ L+   LV +Y  +G+L+D L++  V ++  
Sbjct: 72  AEIYQTVMLRHENILGFIAADNKDNGTWTQLW---LVSDYHEHGSLFDYLNRYTVTVEGM 128
Query: 634 TRHKIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
              K+A   A GLA+LH  ++       I HRD+KS NIL+  N    +AD G+A     
Sbjct: 129 I--KLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA----V 182
Query: 689 RGGKDSTTTVIA-----GTYGYLAPEYAYSS------KATTKCDVYSFGVVLMEL 732
           R    + T  IA     GT  Y+APE    S      ++  + D+Y+ G+V  E+
Sbjct: 183 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI 237

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 22/230 (9%)
Query: 511 VKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASD 569
            K  HR++ ++ E L+ +      G+G  G V  + +  +G   A+K L  ++  + A D
Sbjct: 139 AKPKHRVTMNEFEYLKLL------GKGTFGKVILVKEKATGRYYAMKIL--KKEVIVAKD 190
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH 629
                L     TE   L N RH  +  L   F +      V EY   G L+  L +  V 
Sbjct: 191 EVAHTL-----TENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVF 245
Query: 630 LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
            +   R   A  +   L YLH      +++RD+K  N++LD +   K+ DFG+ K     
Sbjct: 246 SEDRARFYGA-EIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCK----E 298
Query: 690 GGKD-STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           G KD +T     GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 299 GIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 348

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 18/212 (8%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V    +  + + VA+K +  ++  + ++      L+  ++TE+E L  + H 
Sbjct: 17  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALN--VETEIEILKKLNHP 74
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            I+K+  +F +     +V E M  G L+D +  G   L   T     + +   + YLH  
Sbjct: 75  CIIKIKNFFDA-EDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLAVQYLHE- 131
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
             + IIHRD+K  N+LL    +    K+ DFG +K+L    G+ S    + GT  YLAPE
Sbjct: 132 --NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL----GETSLMRTLCGTPTYLAPE 185
Query: 710 YAYS---SKATTKCDVYSFGVVLMELITGRKP 738
              S   +      D +S GV+L   ++G  P
Sbjct: 186 VLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 217

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 18/212 (8%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V    +  + + VA+K +  ++  + ++      L+  ++TE+E L  + H 
Sbjct: 24  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALN--VETEIEILKKLNHP 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            I+K+  +F +     +V E M  G L+D +  G   L   T     + +   + YLH  
Sbjct: 82  CIIKIKNFFDA-EDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLAVQYLHE- 138
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
             + IIHRD+K  N+LL    +    K+ DFG +K+L    G+ S    + GT  YLAPE
Sbjct: 139 --NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL----GETSLMRTLCGTPTYLAPE 192
Query: 710 YAYS---SKATTKCDVYSFGVVLMELITGRKP 738
              S   +      D +S GV+L   ++G  P
Sbjct: 193 VLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 224

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 39  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 89
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 90  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 149
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 150 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 206
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 207 MLNSKGYTKSIDIWSVGCILAEMLSNR 233

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 31  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 81
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 82  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 141
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 142 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 198
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 199 MLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 51  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 101
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 102 NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 161
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 162 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 218
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 219 MLNSKGYTKSIDIWSVGCILAEMLSNR 245

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 51  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 101
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 102 NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIH 161
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 162 S---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 218
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 219 MLNSKGYTKSIDIWSVGCILAEMLSNR 245

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 35  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 85
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 86  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 145
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 146 S---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 202
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 203 MLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 35  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYXQRTLR-EIKILLRFRHE 85
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 86  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 145
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 146 S---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 202
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 203 MLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 29  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 79
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 80  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 139
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 140 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 196
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 197 MLNSKGYTKSIDIWSVGCILAEMLSNR 223

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 29  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 79
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 80  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 139
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 140 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 196
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 197 MLNSKGYTKSIDIWSVGCILAEMLSNR 223

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 36/219 (16%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           ++G G  G VYK       V+A  K+   +++    D            E++ L +  H 
Sbjct: 44  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELED---------YMVEIDILASCDHP 94
Query: 593 NIVKL---YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP-TRHKIAFGVAQGLAY 648
           NIVKL   + Y ++L+   ++ E+   G    A+   ++ L+ P T  +I     Q L  
Sbjct: 95  NIVKLLDAFYYENNLW---ILIEFCAGG----AVDAVMLELERPLTESQIQVVCKQTLDA 147
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA----KVLQARGGKDSTTTVIAGTYG 704
           L++   + IIHRD+K+ NIL  ++   K+ADFG++    + +Q R           GT  
Sbjct: 148 LNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQRRD-------XFIGTPY 200
Query: 705 YLAPEYAYSSKATT-----KCDVYSFGVVLMELITGRKP 738
           ++APE      +       K DV+S G+ L+E+     P
Sbjct: 201 WMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 36  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 86
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 87  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 146
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 147 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 203
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 204 MLNSKGYTKSIDIWSVGCILAEMLSNR 230

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 37  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 87
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 88  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 147
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 148 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 204
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 205 MLNSKGYTKSIDIWSVGCILAEMLSNR 231

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 28  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 78
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 79  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 138
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 139 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 195
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 196 MLNSKGYTKSIDIWSVGCILAEMLSNR 222

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 35  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 85
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 86  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 145
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 146 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 202
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 203 MLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A Ruthenium Organometallic Ligand Ru1 Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 54/297 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYKID-LNSGEVVAVKKLWSQRTKV----SASDTDQLQL 575
           RE  EA      + G+GG GTV+    L     VA+K +   R +V      SD+    L
Sbjct: 26  REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVI--PRNRVLGWSPLSDSVTCPL 83
Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDALHKGLVHLDWPT 634
           +  L  +V   G   H  +++L  +F +    +LV E  +P  +L+D + +     + P+
Sbjct: 84  EVALLWKVGAGGG--HPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPS 141
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ-PKVADFGIAKVLQARGGKD 693
           R    FG  Q +A + H     ++HRDIK  NIL+D+     K+ DFG   +L      D
Sbjct: 142 R--CFFG--QVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLH-----D 192
Query: 694 STTTVIAGTYGYLAPEY----AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI 749
              T   GT  Y  PE+     Y +   T   V+S G++L +++ G  P E D       
Sbjct: 193 EPYTDFDGTRVYSPPEWISRHQYHALPAT---VWSLGILLYDMVCGDIPFERD------- 242
Query: 750 IYWVSIKVDTKEGIMEVLDKKL--SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV 804
                          E+L+ +L        +   ++R   RC +  P++RP++ E++
Sbjct: 243 --------------QEILEAELHFPAHVSPDCCALIR---RCLAPKPSSRPSLEEIL 282

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 23/208 (11%)
Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR 635
           D  L+ E+  L  I+H+NIV L   + S     LV + +  G L+D + +  V+ +    
Sbjct: 50  DSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDAS 109
Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGK 692
             I   V   + YLH    + I+HRD+K  N+L    + N +  + DFG++K+ Q     
Sbjct: 110 LVIQ-QVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ----- 160
Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD-----FGDNK 747
           +   +   GT GY+APE       +   D +S GV+   L+ G  P  ++     F   K
Sbjct: 161 NGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIK 220
Query: 748 NIIY------WVSIKVDTKEGIMEVLDK 769
              Y      W  I    K+ I  +L+K
Sbjct: 221 EGYYEFESPFWDDISESAKDFICHLLEK 248

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 48/230 (20%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +GQG  G V K  +       A+KK+     K+S            + +EV  L ++ H+
Sbjct: 14  LGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLST-----------ILSEVMLLASLNHQ 62
Query: 593 NIVKLYCYF----------------SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
            +V+ Y  +                S+L+  +   EY  N  L+D +H   ++       
Sbjct: 63  YVVRYYAAWLERRNFVKPMTAVKKKSTLFIQM---EYCENRTLYDLIHSENLNQQRDEYW 119
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR------- 689
           ++   + + L+Y+H      IIHRD+K  NI +D +   K+ DFG+AK +          
Sbjct: 120 RLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLD 176
Query: 690 -----GGKDSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELI 733
                G  D+ T+ I GT  Y+A E    +     K D+YS G++  E+I
Sbjct: 177 SQNLPGSSDNLTSAI-GTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI 225

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 20/213 (9%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  GTVYK I +  GE V +        + +    +   +D+ L      + ++ H 
Sbjct: 23  LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL-----IMASMDHP 77
Query: 593 NIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           ++V+L   C   ++    LV + MP+G L + +H+   ++           +A+G+ YL 
Sbjct: 78  HLVRLLGVCLSPTIQ---LVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLE 134
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY--GYLAP 708
              L   +HRD+ + N+L+      K+ DFG+A++L+   G +       G     ++A 
Sbjct: 135 ERRL---VHRDLAARNVLVKSPNHVKITDFGLARLLE---GDEKEYNADGGKMPIKWMAL 188
Query: 709 EYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
           E  +  K T + DV+S+GV + EL+T G KP +
Sbjct: 189 ECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD 221

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G    V + + L +G   A K +     K+SA D  +L+       E      ++H 
Sbjct: 12  IGKGAFSVVRRCVKLCTGHEYAAKII--NTKKLSARDHQKLE------REARICRLLKHS 63
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NIV+L+   S    + LV++ +  G L++     +V  ++ +    +  + Q L  + H 
Sbjct: 64  NIVRLHDSISEEGFHYLVFDLVTGGELFE----DIVAREYYSEADASHCIQQILEAVLHC 119
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
               ++HRD+K  N+LL    +    K+ADFG+A  +Q   G        AGT GYL+PE
Sbjct: 120 HQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQ---GDQQAWFGFAGTPGYLSPE 176
Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
                      D+++ GV+L  L+ G  P  D+
Sbjct: 177 VLRKEAYGKPVDIWACGVILYILLVGYPPFWDE 209

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 20/213 (9%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  GTVYK I +  GE V +        + +    +   +D+ L      + ++ H 
Sbjct: 46  LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL-----IMASMDHP 100
Query: 593 NIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           ++V+L   C   ++    LV + MP+G L + +H+   ++           +A+G+ YL 
Sbjct: 101 HLVRLLGVCLSPTIQ---LVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLE 157
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY--GYLAP 708
              L   +HRD+ + N+L+      K+ DFG+A++L+   G +       G     ++A 
Sbjct: 158 ERRL---VHRDLAARNVLVKSPNHVKITDFGLARLLE---GDEKEYNADGGKMPIKWMAL 211
Query: 709 EYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
           E  +  K T + DV+S+GV + EL+T G KP +
Sbjct: 212 ECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD 244

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 35  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 85
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 86  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKCQHLSNDHICYFLYQILRGLKYIH 145
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 146 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 202
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 203 MLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 33  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLAFRHE 83
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 84  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 143
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 144 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 200
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 201 MLNSKGYTKSIDIWSVGCILAEMLSNR 227

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 14/211 (6%)
Query: 529 TEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
           T+   +G+G  G V      S     V+K      K+S  +  Q    + L+ E++ L  
Sbjct: 46  TQLQYIGEGAYGMV------SSAYDHVRKTRVAIKKISPFE-HQTYCQRTLR-EIQILLR 97
Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGL 646
            RH+N++ +     +     +   Y+    +   L+K L        H   F   + +GL
Sbjct: 98  FRHENVIGIRDILRASTLEAMRDVYIVQDLMETDLYKLLKSQQLSNDHICYFLYQILRGL 157
Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            Y+H    + ++HRD+K +N+L++     K+ DFG+A++           T    T  Y 
Sbjct: 158 KYIHS---ANVLHRDLKPSNLLINTTCDLKICDFGLARIADPEHDHTGFLTEXVATRWYR 214
Query: 707 APEYAYSSKATTKC-DVYSFGVVLMELITGR 736
           APE   +SK  TK  D++S G +L E+++ R
Sbjct: 215 APEIMLNSKGYTKSIDIWSVGCILAEMLSNR 245

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 33  IGEGAYGMVCSAYDNVNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLAFRHE 83
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 84  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 143
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 144 S---ANVLHRDLKPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 200
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 201 MLNSKGYTKSIDIWSVGCILAEMLSNR 227

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 39/224 (17%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VYK  L+   V V V    +++  ++  +  ++ L             + H 
Sbjct: 21  IGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPL-------------MEHD 67
Query: 593 NIVKLYCYFSSLYCN-----LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
           NI +       +  +     LLV EY PNG+L   L   L   DW +  ++A  V +GLA
Sbjct: 68  NIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL--SLHTSDWVSSCRLAHSVTRGLA 125
Query: 648 YLHHGL-----LSPII-HRDIKSTNILLDVNYQPKVADFGIAKVLQAR-----GGKDSTT 696
           YLH  L       P I HRD+ S N+L+  +    ++DFG++  L        G +D+  
Sbjct: 126 YLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAA 185
Query: 697 TVIAGTYGYLAPEYAYSS-------KATTKCDVYSFGVVLMELI 733
               GT  Y+APE    +        A  + D+Y+ G++  E+ 
Sbjct: 186 ISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIF 229

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 40/228 (17%)
Query: 531 KNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K+ +G+G  G V       +GE+VA+KK+      + A  T +         E++ L + 
Sbjct: 16  KSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLR---------EIKILKHF 66
Query: 590 RHKNIVKLYCY--------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           +H+NI+ ++          F+ +Y   ++ E M        LH+ ++     +   I + 
Sbjct: 67  KHENIITIFNIQRPDSFENFNEVY---IIQELMQTD-----LHR-VISTQMLSDDHIQYF 117
Query: 642 VAQGLAYLH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG-------GK 692
           + Q L  +   HG  S +IHRD+K +N+L++ N   KV DFG+A+++           G+
Sbjct: 118 IYQTLRAVKVLHG--SNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQ 175
Query: 693 DSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPV 739
            S  T    T  Y APE    S+K +   DV+S G +L EL   R+P+
Sbjct: 176 QSGMTEXVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFL-RRPI 222

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 524 ILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
           ++E   +  K+G+G  G V+K  + ++G++VA+KK          S+ D +     L+ E
Sbjct: 1   MMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLE-------SEDDPVIKKIALR-E 52
Query: 583 VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLW--DALHKGL-VHLDWPTRHKIA 639
           +  L  ++H N+V L   F       LV+EY  +  L   D   +G+  HL       I 
Sbjct: 53  IRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHL----VKSIT 108
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
           +   Q + + H       IHRD+K  NIL+  +   K+ DFG A++L   G  D     +
Sbjct: 109 WQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGFARLLT--GPSDYYDDEV 163
Query: 700 AGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITG 735
           A T  Y +PE     ++     DV++ G V  EL++G
Sbjct: 164 A-TRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSG 199

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 564 KVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL 623
           K+SA D  +L+       E      ++H NIV+L+   S    + LV++ +  G L++  
Sbjct: 68  KLSARDHQKLE------REARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFE-- 119
Query: 624 HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP---KVADF 680
              +V  ++ +    +  + Q L  ++H     I+HRD+K  N+LL    +    K+ADF
Sbjct: 120 --DIVAREYYSEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADF 177
Query: 681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           G+A  +Q   G+       AGT GYL+PE           D+++ GV+L  L+ G  P  
Sbjct: 178 GLAIEVQ---GEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFW 234
Query: 741 DD 742
           D+
Sbjct: 235 DE 236

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALH-KGLVHLDWPTRHKI 638
            E   +  +RH N+V+L          L +V EYM  G+L D L  +G   L      K 
Sbjct: 54  AEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 113
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +  V + + YL     +  +HRD+ + N+L+  +   KV+DFG+ K  +A   +D+    
Sbjct: 114 SLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK--EASSTQDTGKLP 168
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           +  T    APE    +  +TK DV+SFG++L E+ + GR P
Sbjct: 169 VKWT----APEALREAAFSTKSDVWSFGILLWEIYSFGRVP 205

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 40/228 (17%)
Query: 531 KNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K+ +G+G  G V       +GE+VA+KK+      + A  T +         E++ L + 
Sbjct: 16  KSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLR---------EIKILKHF 66
Query: 590 RHKNIVKLYCY--------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           +H+NI+ ++          F+ +Y   ++ E M        LH+ ++     +   I + 
Sbjct: 67  KHENIITIFNIQRPDSFENFNEVY---IIQELMQTD-----LHR-VISTQMLSDDHIQYF 117
Query: 642 VAQGLAYLH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG-------GK 692
           + Q L  +   HG  S +IHRD+K +N+L++ N   KV DFG+A+++           G+
Sbjct: 118 IYQTLRAVKVLHG--SNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQ 175
Query: 693 DSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPV 739
            S  T    T  Y APE    S+K +   DV+S G +L EL   R+P+
Sbjct: 176 QSGMTEYVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFL-RRPI 222

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 538 GSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G+  K+ L     +G+ VA+K +     KV A    Q ++++    E+  L  +RH +
Sbjct: 23  GEGSFGKVKLAYHTTTGQKVALKII---NKKVLAKSDMQGRIER----EISYLRLLRHPH 75
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I+KLY    S    ++V EY  N  L+D +    V  D  +  +      Q ++ + +  
Sbjct: 76  IIKLYDVIKSKDEIIMVIEYAGN-ELFDYI----VQRDKMSEQEARRFFQQIISAVEYCH 130
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K  N+LLD +   K+ADFG++ ++    G    T+   G+  Y APE   S
Sbjct: 131 RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT--DGNFLKTS--CGSPNYAAPE-VIS 185
Query: 714 SK--ATTKCDVYSFGVVLMELITGRKPVEDD 742
            K  A  + DV+S GV+L  ++  R P +D+
Sbjct: 186 GKLYAGPEVDVWSCGVILYVMLCRRLPFDDE 216

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 538 GSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G+  K+ L     +G+ VA+K +     KV A    Q ++++    E+  L  +RH +
Sbjct: 22  GEGSFGKVKLAYHTTTGQKVALKII---NKKVLAKSDMQGRIER----EISYLRLLRHPH 74
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I+KLY    S    ++V EY  N  L+D +    V  D  +  +      Q ++ + +  
Sbjct: 75  IIKLYDVIKSKDEIIMVIEYAGN-ELFDYI----VQRDKMSEQEARRFFQQIISAVEYCH 129
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K  N+LLD +   K+ADFG++ ++    G    T+   G+  Y APE   S
Sbjct: 130 RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT--DGNFLKTS--CGSPNYAAPE-VIS 184
Query: 714 SK--ATTKCDVYSFGVVLMELITGRKPVEDD 742
            K  A  + DV+S GV+L  ++  R P +D+
Sbjct: 185 GKLYAGPEVDVWSCGVILYVMLCRRLPFDDE 215

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALH-KGLVHLDWPTRHKI 638
            E   +  +RH N+V+L          L +V EYM  G+L D L  +G   L      K 
Sbjct: 235 AEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 294
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +  V + + YL     +  +HRD+ + N+L+  +   KV+DFG+ K  +A   +D+    
Sbjct: 295 SLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK--EASSTQDTGKLP 349
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           +  T    APE     K +TK DV+SFG++L E+ + GR P
Sbjct: 350 VKWT----APEALREKKFSTKSDVWSFGILLWEIYSFGRVP 386

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA++K+        +    Q    + L+ E++ L   RH+
Sbjct: 35  IGEGAYGMVCSAYDNLNKVRVAIRKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 85
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 86  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 145
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y APE 
Sbjct: 146 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 202
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 203 MLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           K  Q G+G  Y     + + +  ++L S R  VS  + ++         EV  L  IRH 
Sbjct: 44  KCRQKGTGKEY-----AAKFIKKRRLXSSRRGVSREEIER---------EVNILREIRHP 89
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           NI+ L+  F +    +L+ E +  G L+D L  K  +  D  T  +    +  G+ YLH 
Sbjct: 90  NIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEAT--QFLKQILDGVHYLHS 147
Query: 652 GLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
                I H D+K  NI LLD N    + K+ DFGIA  ++A  G +     I GT  ++A
Sbjct: 148 ---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA--GNEFKN--IFGTPEFVA 200
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           PE         + D++S GV+   L++G  P
Sbjct: 201 PEIVNYEPLGLEADMWSIGVITYILLSGASP 231

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           K  Q G+G  Y     + + +  ++L S R  VS  + ++         EV  L  IRH 
Sbjct: 23  KCRQKGTGKEY-----AAKFIKKRRLSSSRRGVSREEIER---------EVNILREIRHP 68
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           NI+ L+  F +    +L+ E +  G L+D L  K  +  D  T  +    +  G+ YLH 
Sbjct: 69  NIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEAT--QFLKQILDGVHYLHS 126
Query: 652 GLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
                I H D+K  NI LLD N    + K+ DFGIA  ++A  G +     I GT  ++A
Sbjct: 127 ---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA--GNEFKN--IFGTPEFVA 179
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           PE         + D++S GV+   L++G  P
Sbjct: 180 PEIVNYEPLGLEADMWSIGVITYILLSGASP 210

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 538 GSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G+  K+ L     +G+ VA+K +     KV A    Q ++++    E+  L  +RH +
Sbjct: 13  GEGSFGKVKLAYHTTTGQKVALKII---NKKVLAKSDMQGRIER----EISYLRLLRHPH 65
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I+KLY    S    ++V EY  N  L+D +    V  D  +  +      Q ++ + +  
Sbjct: 66  IIKLYDVIKSKDEIIMVIEYAGN-ELFDYI----VQRDKMSEQEARRFFQQIISAVEYCH 120
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K  N+LLD +   K+ADFG++ ++    G    T+   G+  Y APE   S
Sbjct: 121 RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT--DGNFLKTS--CGSPNYAAPE-VIS 175
Query: 714 SK--ATTKCDVYSFGVVLMELITGRKPVEDD 742
            K  A  + DV+S GV+L  ++  R P +D+
Sbjct: 176 GKLYAGPEVDVWSCGVILYVMLCRRLPFDDE 206

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 538 GSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G+  K+ L     +G+ VA+K +     KV A    Q ++++    E+  L  +RH +
Sbjct: 17  GEGSFGKVKLAYHTTTGQKVALKII---NKKVLAKSDMQGRIER----EISYLRLLRHPH 69
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I+KLY    S    ++V EY  N  L+D +    V  D  +  +      Q ++ + +  
Sbjct: 70  IIKLYDVIKSKDEIIMVIEYAGN-ELFDYI----VQRDKMSEQEARRFFQQIISAVEYCH 124
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              I+HRD+K  N+LLD +   K+ADFG++ ++    G    T+   G+  Y APE   S
Sbjct: 125 RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT--DGNFLKTS--CGSPNYAAPE-VIS 179
Query: 714 SK--ATTKCDVYSFGVVLMELITGRKPVEDD 742
            K  A  + DV+S GV+L  ++  R P +D+
Sbjct: 180 GKLYAGPEVDVWSCGVILYVMLCRRLPFDDE 210

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           K  Q G+G  Y     + + +  ++L S R  VS  + ++         EV  L  IRH 
Sbjct: 30  KCRQKGTGKEY-----AAKFIKKRRLSSSRRGVSREEIER---------EVNILREIRHP 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           NI+ L+  F +    +L+ E +  G L+D L  K  +  D  T  +    +  G+ YLH 
Sbjct: 76  NIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEAT--QFLKQILDGVHYLHS 133
Query: 652 GLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
                I H D+K  NI LLD N    + K+ DFGIA  ++A  G +     I GT  ++A
Sbjct: 134 ---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA--GNEFKN--IFGTPEFVA 186
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           PE         + D++S GV+   L++G  P
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL---HKGLVHLDWPTR 635
           +K E+  +  + H N+++LY  F S    +LV EY+  G L+D +      L  LD    
Sbjct: 133 VKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELD---- 188
Query: 636 HKIAF--GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY---QPKVADFGIAKVLQARG 690
             I F   + +G+ ++H      I+H D+K  NIL  VN    Q K+ DFG+A+  + R 
Sbjct: 189 -TILFMKQICEGIRHMHQMY---ILHLDLKPENILC-VNRDAKQIKIIDFGLARRYKPR- 242
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
                  V  GT  +LAPE       +   D++S GV+   L++G  P     GDN
Sbjct: 243 ---EKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPF---LGDN 292

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V    +  + + VA++ +  ++  + ++      L+  ++TE+E L  + H 
Sbjct: 157 LGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALN--VETEIEILKKLNHP 214
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            I+K+  +F +     +V E M  G L+D +  G   L   T     + +   + YLH  
Sbjct: 215 CIIKIKNFFDA-EDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLAVQYLHE- 271
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
             + IIHRD+K  N+LL    +    K+ DFG +K+L    G+ S    + GT  YLAPE
Sbjct: 272 --NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL----GETSLMRTLCGTPTYLAPE 325
Query: 710 YAYS---SKATTKCDVYSFGVVLMELITGRKPVED 741
              S   +      D +S GV+L   ++G  P  +
Sbjct: 326 VLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE 360

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     KVADFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V    +  + + VA++ +  ++  + ++      L+  ++TE+E L  + H 
Sbjct: 143 LGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALN--VETEIEILKKLNHP 200
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            I+K+  +F +     +V E M  G L+D +  G   L   T     + +   + YLH  
Sbjct: 201 CIIKIKNFFDAED-YYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLAVQYLHE- 257
Query: 653 LLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
             + IIHRD+K  N+LL    +    K+ DFG +K+L    G+ S    + GT  YLAPE
Sbjct: 258 --NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL----GETSLMRTLCGTPTYLAPE 311
Query: 710 YAYS---SKATTKCDVYSFGVVLMELITGRKPVED 741
              S   +      D +S GV+L   ++G  P  +
Sbjct: 312 VLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE 346

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 63  VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 113
Query: 612 EYMPNGNLWDALHK----GLVHLDWPTRH-----------KIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      GL +   P+ +             A+ VA+G+ YL       
Sbjct: 114 EYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KK 170
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 171 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV-KWMAPEALFDRIY 229
Query: 717 TTKCDVYSFGVVLMELIT------GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV+L E+ T         PVE+ F            K+  KEG    +DK 
Sbjct: 230 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF------------KL-LKEG--HRMDK- 273
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 274 -PSNCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 306

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 28/218 (12%)
Query: 533 KVGQGGSGTVYKI-DL-NSGEVVAVKKLWSQRTK--VSASDTDQLQLDKGLKTEVETLGN 588
           ++G+G  G V+K  DL N G  VA+K++  Q  +  +  S   ++ + + L+T       
Sbjct: 18  EIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET------- 70
Query: 589 IRHKNIVKLY--CYFSSLYCNL---LVYEYMPNGNLWDALHKGLVHLDWPTR--HKIAFG 641
             H N+V+L+  C  S         LV+E++ + +L   L K +     PT     + F 
Sbjct: 71  FEHPNVVRLFDVCTVSRTDRETKLTLVFEHV-DQDLTTYLDK-VPEPGVPTETIKDMMFQ 128
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + +GL +LH      ++HRD+K  NIL+  + Q K+ADFG+A++   +       T +  
Sbjct: 129 LLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ----MALTSVVV 181
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
           T  Y APE    S   T  D++S G +  E+   RKP+
Sbjct: 182 TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPL 218

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 13/207 (6%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+GG G V+   +      A  KL++ +         +    +G   E + L  +  + 
Sbjct: 193 LGRGGFGEVFACQMK-----ATGKLYACKKLNKKRLKKRKGY-QGAMVEKKILAKVHSRF 246
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP--TRHKIAFGVAQGLAYLHH 651
           IV L   F +     LV   M  G++    H   V  D P     +  F  AQ ++ L H
Sbjct: 247 IVSLAYAFETKTDLCLVMTIMNGGDI--RYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD +   +++D G+A  L+A     + T   AGT G++APE  
Sbjct: 305 LHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA---GQTKTKGYAGTPGFMAPELL 361
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKP 738
              +     D ++ GV L E+I  R P
Sbjct: 362 LGEEYDFSVDYFALGVTLYEMIAARGP 388

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 13/207 (6%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+GG G V+   +      A  KL++ +         +    +G   E + L  +  + 
Sbjct: 193 LGRGGFGEVFACQMK-----ATGKLYACKKLNKKRLKKRKGY-QGAMVEKKILAKVHSRF 246
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP--TRHKIAFGVAQGLAYLHH 651
           IV L   F +     LV   M  G++    H   V  D P     +  F  AQ ++ L H
Sbjct: 247 IVSLAYAFETKTDLCLVMTIMNGGDI--RYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD +   +++D G+A  L+A     + T   AGT G++APE  
Sbjct: 305 LHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA---GQTKTKGYAGTPGFMAPELL 361
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKP 738
              +     D ++ GV L E+I  R P
Sbjct: 362 LGEEYDFSVDYFALGVTLYEMIAARGP 388

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 37  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 87
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 88  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 143
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG-TY 703
           G+ YL        +HRD+ + N +LD  +  KVADFG+A+ +  +          A    
Sbjct: 144 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPV 200
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
            ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 201 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 239

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 13/207 (6%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+GG G V+   +      A  KL++ +         +    +G   E + L  +  + 
Sbjct: 193 LGRGGFGEVFACQMK-----ATGKLYACKKLNKKRLKKRKGY-QGAMVEKKILAKVHSRF 246
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP--TRHKIAFGVAQGLAYLHH 651
           IV L   F +     LV   M  G++    H   V  D P     +  F  AQ ++ L H
Sbjct: 247 IVSLAYAFETKTDLCLVMTIMNGGDI--RYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD +   +++D G+A  L+A     + T   AGT G++APE  
Sbjct: 305 LHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA---GQTKTKGYAGTPGFMAPELL 361
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKP 738
              +     D ++ GV L E+I  R P
Sbjct: 362 LGEEYDFSVDYFALGVTLYEMIAARGP 388

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 40/228 (17%)
Query: 531 KNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K+ +G+G  G V       +GE+VA+KK+      + A  T +         E++ L + 
Sbjct: 16  KSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLR---------EIKILKHF 66
Query: 590 RHKNIVKLYCY--------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           +H+NI+ ++          F+ +Y   ++ E M        LH+ ++     +   I + 
Sbjct: 67  KHENIITIFNIQRPDSFENFNEVY---IIQELMQTD-----LHR-VISTQMLSDDHIQYF 117
Query: 642 VAQGLAYLH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG-------GK 692
           + Q L  +   HG  S +IHRD+K +N+L++ N   KV DFG+A+++           G+
Sbjct: 118 IYQTLRAVKVLHG--SNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQ 175
Query: 693 DSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGRKPV 739
            S       T  Y APE    S+K +   DV+S G +L EL   R+P+
Sbjct: 176 QSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFL-RRPI 222

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G  G   KI   S   + V   W +    S ++ ++    + L +EV  L  ++H N
Sbjct: 14  IGTGSYGRCQKIRRKSDGKILV---WKELDYGSMTEAEK----QMLVSEVNLLRELKHPN 66
Query: 594 IVKLYCYF-----SSLYCNLLVYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGVAQG 645
           IV+ Y        ++LY   +V EY   G+L   + KG     +LD     ++   +   
Sbjct: 67  IVRYYDRIIDRTNTTLY---IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA 123
Query: 646 LAYLHHGLLS--PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           L   H        ++HRD+K  N+ LD     K+ DFG+A++L       S      GT 
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNH---DTSFAKAFVGTP 180
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
            Y++PE         K D++S G +L EL
Sbjct: 181 YYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 104 VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 154
Query: 612 EYMPNGNLWDALHK----GLVHLDWPTRH-----------KIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      GL +   P+ +             A+ VA+G+ YL       
Sbjct: 155 EYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KK 211
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 212 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV-KWMAPEALFDRIY 270
Query: 717 TTKCDVYSFGVVLMELIT------GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV+L E+ T         PVE+ F            K+  KEG    +DK 
Sbjct: 271 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF------------KL-LKEG--HRMDK- 314
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 315 -PSNCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 347

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 13/207 (6%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+GG G V+   +      A  KL++ +         +    +G   E + L  +  + 
Sbjct: 193 LGRGGFGEVFACQMK-----ATGKLYACKKLNKKRLKKRKGY-QGAMVEKKILAKVHSRF 246
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP--TRHKIAFGVAQGLAYLHH 651
           IV L   F +     LV   M  G++    H   V  D P     +  F  AQ ++ L H
Sbjct: 247 IVSLAYAFETKTDLCLVMTIMNGGDI--RYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                II+RD+K  N+LLD +   +++D G+A  L+A     + T   AGT G++APE  
Sbjct: 305 LHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA---GQTKTKGYAGTPGFMAPELL 361
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKP 738
              +     D ++ GV L E+I  R P
Sbjct: 362 LGEEYDFSVDYFALGVTLYEMIAARGP 388

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 48  VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 98
Query: 612 EYMPNGNLWDALHK----GLVHLDWPTRH-----------KIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      GL +   P+ +             A+ VA+G+ YL       
Sbjct: 99  EYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KK 155
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 156 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV-KWMAPEALFDRIY 214
Query: 717 TTKCDVYSFGVVLMELIT------GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV+L E+ T         PVE+ F            K+  KEG    +DK 
Sbjct: 215 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF------------KL-LKEG--HRMDK- 258
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 259 -PSNCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 291

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 35  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 85
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 86  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 145
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V                T  Y APE 
Sbjct: 146 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEI 202
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 203 MLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V     N  +V VA+KK+        +    Q    + L+ E++ L   RH+
Sbjct: 36  IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEHQTYCQRTLR-EIKILLRFRHE 86
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAYLH 650
           NI+ +     +     +   Y+    +   L+K L        H   F   + +GL Y+H
Sbjct: 87  NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 146
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + ++HRD+K +N+LL+     K+ DFG+A+V                T  Y APE 
Sbjct: 147 S---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEI 203
Query: 711 AYSSKATTKC-DVYSFGVVLMELITGR 736
             +SK  TK  D++S G +L E+++ R
Sbjct: 204 MLNSKGYTKSIDIWSVGCILAEMLSNR 230

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY P G ++  L + +     P     A  +     YLH
Sbjct: 104 LVKLEFSFKDNSNLY---MVLEYAPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 159
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     KVADFG AK ++ R      T  + GT  YLAPE 
Sbjct: 160 S---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGR------TWXLCGTPEYLAPEI 210
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 211 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G  G   KI   S   + V   W +    S ++ ++    + L +EV  L  ++H N
Sbjct: 14  IGTGSYGRCQKIRRKSDGKILV---WKELDYGSMTEAEK----QMLVSEVNLLRELKHPN 66
Query: 594 IVKLYCYF-----SSLYCNLLVYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGVAQG 645
           IV+ Y        ++LY   +V EY   G+L   + KG     +LD     ++   +   
Sbjct: 67  IVRYYDRIIDRTNTTLY---IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA 123
Query: 646 LAYLHHGLLS--PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           L   H        ++HRD+K  N+ LD     K+ DFG+A++L       S      GT 
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNH---DTSFAKTFVGTP 180
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
            Y++PE         K D++S G +L EL
Sbjct: 181 YYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 29/198 (14%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 63  VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 113
Query: 612 EYMPNGNLWDALHK----GLVHLDWPTRH-----------KIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      GL     P+ +             A+ VA+G+ YL       
Sbjct: 114 EYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KK 170
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 171 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLPV-KWMAPEALFDRIY 229
Query: 717 TTKCDVYSFGVVLMELIT 734
           T + DV+SFGV+L E+ T
Sbjct: 230 THQSDVWSFGVLLWEIFT 247

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 120/292 (41%), Gaps = 58/292 (19%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G+G  G V K   + SG++ AVK     R + + +  +Q +L   L     T+     
Sbjct: 41  ELGRGAYGVVEKXRHVPSGQIXAVK-----RIRATVNSQEQKRLLXDLDISXRTVD---- 91
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLW----------DALHKGLVH----LDWPTRHK 637
                  C F+  +   L  E    G++W          D  +K ++     +      K
Sbjct: 92  -------CPFTVTFYGALFRE----GDVWICXELXDTSLDKFYKQVIDKGQTIPEDILGK 140
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           IA  + + L +LH  L   +IHRD+K +N+L++   Q K  DFGI+  L     KD    
Sbjct: 141 IAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKXCDFGISGYLVDDVAKD---- 194
Query: 698 VIAGTYGYLAPEYA----YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
           + AG   Y APE           + K D++S G+  +EL   R P  D +G       + 
Sbjct: 195 IDAGCKPYXAPERINPELNQKGYSVKSDIWSLGITXIELAILRFPY-DSWGTP-----FQ 248
Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +K   +E   ++   K S  F D   Q       C  K+   RPT  E+ Q
Sbjct: 249 QLKQVVEEPSPQLPADKFSAEFVDFTSQ-------CLKKNSKERPTYPELXQ 293

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 59  TENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGA- 117
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVI 699
            +   L YLH      +++RD+K  N++LD +   K+ DFG+ K     G KD +T    
Sbjct: 118 EIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCK----EGIKDGATMKXF 171
Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 172 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 210

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 57  TENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGA- 115
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVI 699
            +   L YLH      +++RD+K  N++LD +   K+ DFG+ K     G KD +T    
Sbjct: 116 EIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCK----EGIKDGATMKXF 169
Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 170 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 208

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 28/218 (12%)
Query: 533 KVGQGGSGTVYKI-DL-NSGEVVAVKKLWSQRTK--VSASDTDQLQLDKGLKTEVETLGN 588
           ++G+G  G V+K  DL N G  VA+K++  Q  +  +  S   ++ + + L+T       
Sbjct: 18  EIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET------- 70
Query: 589 IRHKNIVKLY--CYFSSLYCNL---LVYEYMPNGNLWDALHKGLVHLDWPTR--HKIAFG 641
             H N+V+L+  C  S         LV+E++ + +L   L K +     PT     + F 
Sbjct: 71  FEHPNVVRLFDVCTVSRTDRETKLTLVFEHV-DQDLTTYLDK-VPEPGVPTETIKDMMFQ 128
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + +GL +LH      ++HRD+K  NIL+  + Q K+ADFG+A++   +       T +  
Sbjct: 129 LLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ----MALTSVVV 181
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
           T  Y APE    S   T  D++S G +  E+   RKP+
Sbjct: 182 TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPL 218

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TE   L N RH  +  L   F +      V EY   G L+  L +  V  +   R   A 
Sbjct: 58  TENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGA- 116
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD-STTTVI 699
            +   L YLH      +++RD+K  N++LD +   K+ DFG+ K     G KD +T    
Sbjct: 117 EIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCK----EGIKDGATMKXF 170
Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            GT  YLAPE    +      D +  GVV+ E++ GR P
Sbjct: 171 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 209

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 106/224 (47%), Gaps = 37/224 (16%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 57  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 107
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 108 SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 163
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        +HRD+ + N +LD  +  KVADFG+A     R   D     +    G
Sbjct: 164 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLA-----RDMYDKEYYSVHNKTG 215
Query: 705 ------YLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
                 ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 216 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 259

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 28/218 (12%)
Query: 533 KVGQGGSGTVYKI-DL-NSGEVVAVKKLWSQRTK--VSASDTDQLQLDKGLKTEVETLGN 588
           ++G+G  G V+K  DL N G  VA+K++  Q  +  +  S   ++ + + L+T       
Sbjct: 18  EIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET------- 70
Query: 589 IRHKNIVKLY--CYFSSLYCNL---LVYEYMPNGNLWDALHKGLVHLDWPTR--HKIAFG 641
             H N+V+L+  C  S         LV+E++ + +L   L K +     PT     + F 
Sbjct: 71  FEHPNVVRLFDVCTVSRTDRETKLTLVFEHV-DQDLTTYLDK-VPEPGVPTETIKDMMFQ 128
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + +GL +LH      ++HRD+K  NIL+  + Q K+ADFG+A++   +       T +  
Sbjct: 129 LLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ----MALTSVVV 181
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
           T  Y APE    S   T  D++S G +  E+   RKP+
Sbjct: 182 TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPL 218

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 95/222 (42%), Gaps = 33/222 (14%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI- 589
           ++ +G+G  G V K  +    +     +  +R K  AS  D     +    E+E L  + 
Sbjct: 20  QDVIGEGNFGQVLKARIKKDGLRMDAAI--KRMKEYASKDDH----RDFAGELEVLCKLG 73
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH------------- 636
            H NI+ L           L  EY P+GNL D L K  V    P                
Sbjct: 74  HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 133
Query: 637 --KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
               A  VA+G+ YL        IHRD+ + NIL+  NY  K+ADFG+++      G++ 
Sbjct: 134 LLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSR------GQEV 184
Query: 695 TTTVIAGT--YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
                 G     ++A E    S  TT  DV+S+GV+L E+++
Sbjct: 185 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 226

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 137/336 (40%), Gaps = 82/336 (24%)
Query: 508 PYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAVKKLWSQ 561
           PYD    H+  F +  +    T    +G G  G V +      I  ++   VAVK L   
Sbjct: 29  PYD----HKWEFPRNRLSFGKT----LGAGAFGKVVEATAYGLIKSDAAMTVAVKML--- 77
Query: 562 RTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWD 621
             K SA  T++  L   LK  +  LGN  H NIV L    +     L++ EY   G+L +
Sbjct: 78  --KPSAHLTEREALMSELKV-LSYLGN--HMNIVNLLGACTIGGPTLVITEYCCYGDLLN 132
Query: 622 ALHKG----LVHLDWPT-------------RHKIAFGVAQGLAYLHHGLLSPIIHRDIKS 664
            L +     +     P                  ++ VA+G+A+L        IHRD+ +
Sbjct: 133 FLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAA 189
Query: 665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT----YGYLAPEYAYSSKATTKC 720
            NILL      K+ DFG+     AR  K+ +  V+ G       ++APE  ++   T + 
Sbjct: 190 RNILLTHGRITKICDFGL-----ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 244
Query: 721 DVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR--- 776
           DV+S+G+ L EL + G  P             +  + VD+K        K +   FR   
Sbjct: 245 DVWSYGIFLWELFSLGSSP-------------YPGMPVDSK------FYKMIKEGFRMLS 285
Query: 777 -----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                 EM  +++    C    P  RPT  ++VQL+
Sbjct: 286 PEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLI 318

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V   D    E +   K+  +   +   D +   ++K +   ++     +   
Sbjct: 27  LGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEKRVLALLD-----KPPF 81
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           + +L+  F ++     V EY+  G+L   + + +     P     A  ++ GL +LH   
Sbjct: 82  LTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQ-VGKFKEPQAVFYAAEISIGLFFLHK-- 138
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              II+RD+K  N++LD     K+ADFG+ K     G    TT    GT  Y+APE    
Sbjct: 139 -RGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDG---VTTREFCGTPDYIAPEIIAY 194
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVE 740
                  D +++GV+L E++ G+ P +
Sbjct: 195 QPYGKSVDWWAYGVLLYEMLAGQPPFD 221

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 63  VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 113
Query: 612 EYMPNGNLWDALHK----GLVHLDWPTRH-----------KIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      GL +   P+ +             A+ VA+G+ YL       
Sbjct: 114 EYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KK 170
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 171 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV-KWMAPEALFDRIY 229
Query: 717 TTKCDVYSFGVVLMELIT------GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV+L E+ T         PVE+ F            K+  KEG    +DK 
Sbjct: 230 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF------------KL-LKEG--HRMDK- 273
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 274 -PSNCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 306

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   ++    +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 30  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 80
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 81  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 136
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG-TY 703
           G+ YL        +HRD+ + N +LD  +  KVADFG+A+ +  +          A    
Sbjct: 137 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPV 193
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
            ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 194 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 232

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 88
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 89  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 144
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG-TY 703
           G+ YL        +HRD+ + N +LD  +  KVADFG+A+ +  +          A    
Sbjct: 145 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPV 201
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
            ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 202 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 63  VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 113
Query: 612 EYMPNGNLWDALHK----GLVHLDWPTRH-----------KIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      GL +   P+ +             A+ VA+G+ YL       
Sbjct: 114 EYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KK 170
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 171 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV-KWMAPEALFDRIY 229
Query: 717 TTKCDVYSFGVVLMELIT------GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV+L E+ T         PVE+ F            K+  KEG    +DK 
Sbjct: 230 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF------------KL-LKEG--HRMDK- 273
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 274 -PSNCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 306

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 41/227 (18%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           VG G  G VYK   + +G++ A+K +      V+  + +++      K E+  L     H
Sbjct: 32  VGNGTYGQVYKGRHVKTGQLAAIKVM-----DVTGDEEEEI------KQEINMLKKYSHH 80
Query: 592 KNIVKLYCYF---------SSLYCNLLVYEYMPNGNLWDALH--KG-LVHLDWPTRHKIA 639
           +NI   Y  F           L+   LV E+   G++ D +   KG  +  +W     I 
Sbjct: 81  RNIATYYGAFIKKNPPGMDDQLW---LVMEFCGAGSVTDLIKNTKGNTLKEEWIAY--IC 135
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
             + +GL++LH      +IHRDIK  N+LL  N + K+ DFG++  L    G+ +T    
Sbjct: 136 REILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNT---F 189
Query: 700 AGTYGYLAPEYAYSSK---ATT--KCDVYSFGVVLMELITGRKPVED 741
            GT  ++APE     +   AT   K D++S G+  +E+  G  P+ D
Sbjct: 190 IGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCD 236

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 55  VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 105
Query: 612 EYMPNGNLWDALHK----GLVHLDWPTRH-----------KIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      GL +   P+ +             A+ VA+G+ YL       
Sbjct: 106 EYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KK 162
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 163 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV-KWMAPEALFDRIY 221
Query: 717 TTKCDVYSFGVVLMELIT------GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV+L E+ T         PVE+ F            K+  KEG    +DK 
Sbjct: 222 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF------------KL-LKEG--HRMDK- 265
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 266 -PSNCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 298

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 95/222 (42%), Gaps = 33/222 (14%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI- 589
           ++ +G+G  G V K  +    +     +  +R K  AS  D     +    E+E L  + 
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAI--KRMKEYASKDDH----RDFAGELEVLCKLG 83
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH------------- 636
            H NI+ L           L  EY P+GNL D L K  V    P                
Sbjct: 84  HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 143
Query: 637 --KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
               A  VA+G+ YL        IHRD+ + NIL+  NY  K+ADFG+++      G++ 
Sbjct: 144 LLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSR------GQEV 194
Query: 695 TTTVIAGT--YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
                 G     ++A E    S  TT  DV+S+GV+L E+++
Sbjct: 195 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 236

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 26/213 (12%)
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHK 637
           ++ E+  L  I+H NIV L   + S     L+ + +  G L+D +  KG       +R  
Sbjct: 63  MENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASR-- 120
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNIL---LDVNYQPKVADFGIAKVLQARGGKDS 694
           + F V   + YLH      I+HRD+K  N+L   LD + +  ++DFG++K ++  G   S
Sbjct: 121 LIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG---S 173
Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK------- 747
             +   GT GY+APE       +   D +S GV+   L+ G  P  D+  D K       
Sbjct: 174 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-NDAKLFEQILK 232
Query: 748 -----NIIYWVSIKVDTKEGIMEVLDKKLSGSF 775
                +  YW  I    K+ I  +++K     F
Sbjct: 233 AEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 52  VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 102
Query: 612 EYMPNGNLWDALHK----GLVHLDWPTRH-----------KIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      GL +   P+ +             A+ VA+G+ YL       
Sbjct: 103 EYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KK 159
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 160 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV-KWMAPEALFDRIY 218
Query: 717 TTKCDVYSFGVVLMELIT------GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV+L E+ T         PVE+ F            K+  KEG    +DK 
Sbjct: 219 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF------------KL-LKEG--HRMDK- 262
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 263 -PSNCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 295

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 26/213 (12%)
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHK 637
           ++ E+  L  I+H NIV L   + S     L+ + +  G L+D +  KG       +R  
Sbjct: 63  MENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASR-- 120
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNIL---LDVNYQPKVADFGIAKVLQARGGKDS 694
           + F V   + YLH      I+HRD+K  N+L   LD + +  ++DFG++K ++  G   S
Sbjct: 121 LIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG---S 173
Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK------- 747
             +   GT GY+APE       +   D +S GV+   L+ G  P  D+  D K       
Sbjct: 174 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-NDAKLFEQILK 232
Query: 748 -----NIIYWVSIKVDTKEGIMEVLDKKLSGSF 775
                +  YW  I    K+ I  +++K     F
Sbjct: 233 AEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 138/338 (40%), Gaps = 82/338 (24%)
Query: 508 PYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAVKKLWSQ 561
           PYD    H+  F +  +    T    +G G  G V +      I  ++   VAVK L   
Sbjct: 13  PYD----HKWEFPRNRLSFGKT----LGAGAFGKVVEATAYGLIKSDAAMTVAVKML--- 61
Query: 562 RTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWD 621
             K SA  T++  L   LK  +  LGN  H NIV L    +     L++ EY   G+L +
Sbjct: 62  --KPSAHLTEREALMSELKV-LSYLGN--HMNIVNLLGACTIGGPTLVITEYCCYGDLLN 116
Query: 622 ALHKG----LVHLDWPT-------------RHKIAFGVAQGLAYLHHGLLSPIIHRDIKS 664
            L +     +     P                  ++ VA+G+A+L        IHRD+ +
Sbjct: 117 FLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAA 173
Query: 665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT----YGYLAPEYAYSSKATTKC 720
            NILL      K+ DFG+     AR  K+ +  V+ G       ++APE  ++   T + 
Sbjct: 174 RNILLTHGRITKICDFGL-----ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 228
Query: 721 DVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR--- 776
           DV+S+G+ L EL + G  P             +  + VD+K        K +   FR   
Sbjct: 229 DVWSYGIFLWELFSLGSSP-------------YPGMPVDSK------FYKMIKEGFRMLS 269
Query: 777 -----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
                 EM  +++    C    P  RPT  ++VQL+ +
Sbjct: 270 PEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLIEK 304

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 39  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 89
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 90  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 145
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK-VLQARGGKDSTTTVIAGTY 703
           G+ +L        +HRD+ + N +LD  +  KVADFG+A+ +L          T      
Sbjct: 146 GMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPV 202
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
            ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 203 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 241

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L S  T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 56  VAVKMLKSDATEKDLSD---------LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 106
Query: 612 EYMPNGNLWDALHK----GLVHLDWPTRH-----------KIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      GL +   P+ +             A+ VA+G+ YL       
Sbjct: 107 EYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KK 163
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  +   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 164 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV-KWMAPEALFDRIY 222
Query: 717 TTKCDVYSFGVVLMELIT------GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           T + DV+SFGV+L E+ T         PVE+ F            K+  KEG    +DK 
Sbjct: 223 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF------------KL-LKEG--HRMDK- 266
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
              +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 267 -PSNCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 299

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 56  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 106
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 107 SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 162
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG-TY 703
           G+ YL        +HRD+ + N +LD  +  KVADFG+A+ +  +          A    
Sbjct: 163 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPV 219
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
            ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 220 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 258

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G VY     ++G++ A+K L  +R K+   +T  L L++ +   + + G+    
Sbjct: 197 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGET--LALNERIMLSLVSTGDC--P 252
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            IV +   F +      + + M  G+L   L +  V  +   R   A  +  GL ++H+ 
Sbjct: 253 FIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAA-EIILGLEHMHNR 311
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE--- 709
               +++RD+K  NILLD +   +++D G+A     +    S      GT+GY+APE   
Sbjct: 312 F---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV-----GTHGYMAPEVLQ 363
Query: 710 --YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
              AY S A    D +S G +L +L+ G  P       +K+ I
Sbjct: 364 KGVAYDSSA----DWFSLGCMLFKLLRGHSPFRQHKTKDKHEI 402

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G VY     ++G++ A+K L  +R K+   +T  L L++ +   + + G+    
Sbjct: 197 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGET--LALNERIMLSLVSTGDC--P 252
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            IV +   F +      + + M  G+L   L +  V  +   R   A  +  GL ++H+ 
Sbjct: 253 FIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAA-EIILGLEHMHNR 311
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE--- 709
               +++RD+K  NILLD +   +++D G+A     +    S      GT+GY+APE   
Sbjct: 312 F---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV-----GTHGYMAPEVLQ 363
Query: 710 --YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
              AY S A    D +S G +L +L+ G  P       +K+ I
Sbjct: 364 KGVAYDSSA----DWFSLGCMLFKLLRGHSPFRQHKTKDKHEI 402

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G VY     ++G++ A+K L  +R K+   +T  L L++ +   + + G+    
Sbjct: 197 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGET--LALNERIMLSLVSTGDC--P 252
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            IV +   F +      + + M  G+L   L +  V  +   R   A  +  GL ++H+ 
Sbjct: 253 FIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAA-EIILGLEHMHNR 311
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE--- 709
               +++RD+K  NILLD +   +++D G+A     +    S      GT+GY+APE   
Sbjct: 312 F---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV-----GTHGYMAPEVLQ 363
Query: 710 --YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
              AY S A    D +S G +L +L+ G  P       +K+ I
Sbjct: 364 KGVAYDSSA----DWFSLGCMLFKLLRGHSPFRQHKTKDKHEI 402

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 36  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 86
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 87  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 142
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG-TY 703
           G+ YL        +HRD+ + N +LD  +  KVADFG+A+ +  +          A    
Sbjct: 143 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPV 199
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
            ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 200 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 238

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G  G   KI   S   + V   W +    S ++ ++    + L +EV  L  ++H N
Sbjct: 14  IGTGSYGRCQKIRRKSDGKILV---WKELDYGSMTEAEK----QMLVSEVNLLRELKHPN 66
Query: 594 IVKLYCYF-----SSLYCNLLVYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGVAQG 645
           IV+ Y        ++LY   +V EY   G+L   + KG     +LD     ++   +   
Sbjct: 67  IVRYYDRIIDRTNTTLY---IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA 123
Query: 646 LAYLHHGLLS--PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           L   H        ++HRD+K  N+ LD     K+ DFG+A++L      +       GT 
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNH---DEDFAKEFVGTP 180
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
            Y++PE         K D++S G +L EL
Sbjct: 181 YYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 27  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 85
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 86  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 133
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 134 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 190
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 191 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 240

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 35  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 85
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 86  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 141
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG-TY 703
           G+ YL        +HRD+ + N +LD  +  KVADFG+A+ +  +          A    
Sbjct: 142 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPV 198
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
            ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 199 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 237

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+GG G VY     ++G++ A+K L  +R K+   +T  L L++ +   + + G+    
Sbjct: 196 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGET--LALNERIMLSLVSTGDC--P 251
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
            IV +   F +      + + M  G+L   L +  V  +   R   A  +  GL ++H+ 
Sbjct: 252 FIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAA-EIILGLEHMHNR 310
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE--- 709
               +++RD+K  NILLD +   +++D G+A     +    S      GT+GY+APE   
Sbjct: 311 F---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV-----GTHGYMAPEVLQ 362
Query: 710 --YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
              AY S A    D +S G +L +L+ G  P       +K+ I
Sbjct: 363 KGVAYDSSA----DWFSLGCMLFKLLRGHSPFRQHKTKDKHEI 401

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 138/338 (40%), Gaps = 82/338 (24%)
Query: 508 PYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAVKKLWSQ 561
           PYD    H+  F +  +    T    +G G  G V +      I  ++   VAVK L   
Sbjct: 31  PYD----HKWEFPRNRLSFGKT----LGAGAFGKVVEATAYGLIKSDAAMTVAVKML--- 79
Query: 562 RTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWD 621
             K SA  T++  L   LK  +  LGN  H NIV L    +     L++ EY   G+L +
Sbjct: 80  --KPSAHLTEREALMSELKV-LSYLGN--HMNIVNLLGACTIGGPTLVITEYCCYGDLLN 134
Query: 622 ALHKG----LVHLDWPT-------------RHKIAFGVAQGLAYLHHGLLSPIIHRDIKS 664
            L +     +     P                  ++ VA+G+A+L        IHRD+ +
Sbjct: 135 FLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAA 191
Query: 665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT----YGYLAPEYAYSSKATTKC 720
            NILL      K+ DFG+     AR  K+ +  V+ G       ++APE  ++   T + 
Sbjct: 192 RNILLTHGRITKICDFGL-----ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 246
Query: 721 DVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR--- 776
           DV+S+G+ L EL + G  P             +  + VD+K        K +   FR   
Sbjct: 247 DVWSYGIFLWELFSLGSSP-------------YPGMPVDSK------FYKMIKEGFRMLS 287
Query: 777 -----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
                 EM  +++    C    P  RPT  ++VQL+ +
Sbjct: 288 PEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLIEK 322

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 3   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 61
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 62  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 109
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 110 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 166
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 167 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 26  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 84
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 85  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 132
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 133 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 189
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 190 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 239

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 138/338 (40%), Gaps = 82/338 (24%)
Query: 508 PYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAVKKLWSQ 561
           PYD    H+  F +  +    T    +G G  G V +      I  ++   VAVK L   
Sbjct: 36  PYD----HKWEFPRNRLSFGKT----LGAGAFGKVVEATAYGLIKSDAAMTVAVKML--- 84
Query: 562 RTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWD 621
             K SA  T++  L   LK  +  LGN  H NIV L    +     L++ EY   G+L +
Sbjct: 85  --KPSAHLTEREALMSELKV-LSYLGN--HMNIVNLLGACTIGGPTLVITEYCCYGDLLN 139
Query: 622 ALHKG----LVHLDWPT-------------RHKIAFGVAQGLAYLHHGLLSPIIHRDIKS 664
            L +     +     P                  ++ VA+G+A+L        IHRD+ +
Sbjct: 140 FLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAA 196
Query: 665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT----YGYLAPEYAYSSKATTKC 720
            NILL      K+ DFG+     AR  K+ +  V+ G       ++APE  ++   T + 
Sbjct: 197 RNILLTHGRITKICDFGL-----ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 251
Query: 721 DVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR--- 776
           DV+S+G+ L EL + G  P             +  + VD+K        K +   FR   
Sbjct: 252 DVWSYGIFLWELFSLGSSP-------------YPGMPVDSK------FYKMIKEGFRMLS 292
Query: 777 -----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
                 EM  +++    C    P  RPT  ++VQL+ +
Sbjct: 293 PEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLIEK 327

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 26/213 (12%)
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHK 637
           ++ E+  L  I+H NIV L   + S     L+ + +  G L+D +  KG       +R  
Sbjct: 63  MENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASR-- 120
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNIL---LDVNYQPKVADFGIAKVLQARGGKDS 694
           + F V   + YLH      I+HRD+K  N+L   LD + +  ++DFG++K ++  G   S
Sbjct: 121 LIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG---S 173
Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK------- 747
             +   GT GY+APE       +   D +S GV+   L+ G  P  D+  D K       
Sbjct: 174 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-NDAKLFEQILK 232
Query: 748 -----NIIYWVSIKVDTKEGIMEVLDKKLSGSF 775
                +  YW  I    K+ I  +++K     F
Sbjct: 233 AEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 33  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 83
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 84  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 139
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG-TY 703
           G+ YL        +HRD+ + N +LD  +  KVADFG+A+ +  +          A    
Sbjct: 140 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPV 196
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
            ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 197 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 235

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 26/213 (12%)
Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHK 637
           ++ E+  L  I+H NIV L   + S     L+ + +  G L+D +  KG       +R  
Sbjct: 63  MENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASR-- 120
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNIL---LDVNYQPKVADFGIAKVLQARGGKDS 694
           + F V   + YLH      I+HRD+K  N+L   LD + +  ++DFG++K ++  G   S
Sbjct: 121 LIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG---S 173
Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK------- 747
             +   GT GY+APE       +   D +S GV+   L+ G  P  D+  D K       
Sbjct: 174 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-NDAKLFEQILK 232
Query: 748 -----NIIYWVSIKVDTKEGIMEVLDKKLSGSF 775
                +  YW  I    K+ I  +++K     F
Sbjct: 233 AEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 106/224 (47%), Gaps = 37/224 (16%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 88
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 89  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 144
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        +HRD+ + N +LD  +  KVADFG+A     R   D     +    G
Sbjct: 145 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLA-----RDMYDKEYYSVHNKTG 196
Query: 705 ------YLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
                 ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 197 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 139/338 (41%), Gaps = 82/338 (24%)
Query: 508 PYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAVKKLWSQ 561
           PYD    H+  F +  +    T    +G G  G V +      I  ++   VAVK L   
Sbjct: 36  PYD----HKWEFPRNRLSFGKT----LGAGAFGKVVEATAYGLIKSDAAMTVAVKML--- 84
Query: 562 RTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWD 621
             K SA  T++  L   LK  +  LGN  H NIV L    +     L++ EY   G+L +
Sbjct: 85  --KPSAHLTEREALMSELKV-LSYLGN--HMNIVNLLGACTIGGPTLVITEYCCYGDLLN 139
Query: 622 ALHKG----LVHLDWPT-------------RHKIAFGVAQGLAYLHHGLLSPIIHRDIKS 664
            L +     +     P                  ++ VA+G+A+L        IHRD+ +
Sbjct: 140 FLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAA 196
Query: 665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT----YGYLAPEYAYSSKATTKC 720
            NILL      K+ DFG+A+ +     K+ +  V+ G       ++APE  ++   T + 
Sbjct: 197 RNILLTHGRITKICDFGLARHI-----KNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 251
Query: 721 DVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR--- 776
           DV+S+G+ L EL + G  P             +  + VD+K        K +   FR   
Sbjct: 252 DVWSYGIFLWELFSLGSSP-------------YPGMPVDSK------FYKMIKEGFRMLS 292
Query: 777 -----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
                 EM  +++    C    P  RPT  ++VQL+ +
Sbjct: 293 PEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLIEK 327

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 106/224 (47%), Gaps = 37/224 (16%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 37  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 87
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 88  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 143
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           G+ YL        +HRD+ + N +LD  +  KVADFG+A     R   D     +    G
Sbjct: 144 GMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLA-----RDMYDKEYYSVHNKTG 195
Query: 705 ------YLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
                 ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 196 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 239

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E       VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 17  TFYRQELNKTIWEVPERYQNLAPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 75
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 76  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 123
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 124 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 180
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 181 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 230

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKXQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 32/224 (14%)
Query: 523 EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E+ E     + VG G  G+V    D  +G  VAVKKL      +  +        K    
Sbjct: 25  EVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA--------KRTYR 76
Query: 582 EVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           E+  L +++H+N++ L   F+       + ++ +  ++   +L       +V     T  
Sbjct: 77  ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL-----NNIVKCQKLTDD 131
Query: 637 KIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD 693
            + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG+     AR   D
Sbjct: 132 HVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGL-----ARHTDD 183
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
             T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 184 EMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 226

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 28/211 (13%)
Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGL-VHLDWP 633
           +  ++ E+  L  I+H+NIV L   + S     LV + +  G L+D +  KG     D  
Sbjct: 64  ESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDAS 123
Query: 634 TRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARG 690
           T   +   V   + YLH      I+HRD+K  N+L    D   +  ++DFG++K+     
Sbjct: 124 T---LIRQVLDAVYYLHR---MGIVHRDLKPENLLYYSQDEESKIMISDFGLSKM----E 173
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK--- 747
           GK    +   GT GY+APE       +   D +S GV+   L+ G  P  D+  D+K   
Sbjct: 174 GKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-NDSKLFE 232
Query: 748 ---------NIIYWVSIKVDTKEGIMEVLDK 769
                    +  YW  I    K+ I  +++K
Sbjct: 233 QILKAEYEFDSPYWDDISDSAKDFIRNLMEK 263

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK------IAFGVAQGLA 647
           + +L+  F ++     V EY+  G+L       + H+    R K       A  +A GL 
Sbjct: 404 LTQLHSCFQTMDRLYFVMEYVNGGDL-------MYHIQQVGRFKEPHAVFYAAEIAIGLF 456
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           +L       II+RD+K  N++LD     K+ADFG+ K     G    TT    GT  Y+A
Sbjct: 457 FLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG---VTTKXFCGTPDYIA 510
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
           PE           D ++FGV+L E++ G+ P E +  D 
Sbjct: 511 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE 549

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK------IAFGVAQGLA 647
           + +L+  F ++     V EY+  G+L       + H+    R K       A  +A GL 
Sbjct: 83  LTQLHSCFQTMDRLYFVMEYVNGGDL-------MYHIQQVGRFKEPHAVFYAAEIAIGLF 135
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           +L       II+RD+K  N++LD     K+ADFG+ K     G    TT    GT  Y+A
Sbjct: 136 FLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG---VTTKXFCGTPDYIA 189
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           PE           D ++FGV+L E++ G+ P E
Sbjct: 190 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE 222

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 12  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 70
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 71  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 118
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 119 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFG 175
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 176 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 19/215 (8%)
Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            ++G+G    V + + + +G+  A K +     K+SA D  +L+       E      ++
Sbjct: 28  EELGKGAFSVVRRCVKVLAGQEYAAKII--NTKKLSARDHQKLE------REARICRLLK 79
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H NIV+L+   S    + L+++ +  G L++     +V  ++ +    +  + Q L  + 
Sbjct: 80  HPNIVRLHDSISEEGHHYLIFDLVTGGELFE----DIVAREYYSEADASHCIQQILEAVL 135
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           H     ++HRD+K  N+LL    +    K+ADFG+A  ++   G+       AGT GYL+
Sbjct: 136 HCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVE---GEQQAWFGFAGTPGYLS 192
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           PE           D+++ GV+L  L+ G  P  D+
Sbjct: 193 PEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE 227

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 44/225 (19%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +  +G+G  G V++     GE VAVK ++S R + S             + E+     +R
Sbjct: 8   QESIGKGRFGEVWRGKWR-GEEVAVK-IFSSREERSWFR----------EAEIYQTVMLR 55
Query: 591 HKNIVKLYCY-------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
           H+NI+            ++ L+   LV +Y  +G+L+D L++  V ++     K+A   A
Sbjct: 56  HENILGFIAADNKDNGTWTQLW---LVSDYHEHGSLFDYLNRYTVTVEGMI--KLALSTA 110
Query: 644 QGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
            GLA+LH  ++       I HRD+KS NIL+  N    +AD G+A     R    + T  
Sbjct: 111 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA----VRHDSATDTID 166
Query: 699 IA-----GTYGYLAPEYAYSS------KATTKCDVYSFGVVLMEL 732
           IA     GT  Y+APE    S      ++  + D+Y+ G+V  E+
Sbjct: 167 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI 211

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 25/229 (10%)
Query: 515 HRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           HR  F   EIL+       +G+G  G V  + L + + V   K+ ++   +  ++T    
Sbjct: 72  HREDF---EILKV------IGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAET---- 118
Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
                + E + L N   K I  L+  F       LV +Y   G+L   L K     D   
Sbjct: 119 --ACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSK---FEDRLP 173
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
                F +A+ +  +        +HRDIK  NIL+D+N   ++ADFG    L   G   S
Sbjct: 174 EEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQS 233
Query: 695 TTTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKP 738
           +  V  GT  Y++PE   +      +   +CD +S GV + E++ G  P
Sbjct: 234 SVAV--GTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETP 280

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 18  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 76
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 77  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 124
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 125 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFG 181
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 182 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 231

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 44/225 (19%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +  +G+G  G V++     GE VAVK ++S R + S             + E+     +R
Sbjct: 9   QESIGKGRFGEVWRGKWR-GEEVAVK-IFSSREERSWFR----------EAEIYQTVMLR 56
Query: 591 HKNIVKLYCY-------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
           H+NI+            ++ L+   LV +Y  +G+L+D L++  V ++     K+A   A
Sbjct: 57  HENILGFIAADNKDNGTWTQLW---LVSDYHEHGSLFDYLNRYTVTVEGMI--KLALSTA 111
Query: 644 QGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
            GLA+LH  ++       I HRD+KS NIL+  N    +AD G+A     R    + T  
Sbjct: 112 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA----VRHDSATDTID 167
Query: 699 IA-----GTYGYLAPEYAYSS------KATTKCDVYSFGVVLMEL 732
           IA     GT  Y+APE    S      ++  + D+Y+ G+V  E+
Sbjct: 168 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI 212

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGXVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 26/218 (11%)
Query: 525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT-- 581
           +E   + +K+G+G   TVYK     +  +VA+K++             +L+ ++G     
Sbjct: 1   METYIKLDKLGEGTYATVYKGKSKLTDNLVALKEI-------------RLEHEEGAPCTA 47
Query: 582 --EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIA 639
             EV  L +++H NIV L+    +     LV+EY+ + +L   L      ++        
Sbjct: 48  IREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYL-DKDLKQYLDDCGNIINMHNVKLFL 106
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
           F + +GLAY H      ++HRD+K  N+L++   + K+ADFG+A+   A+     T    
Sbjct: 107 FQLLRGLAYCHR---QKVLHRDLKPQNLLINERGELKLADFGLAR---AKSIPTKTYDNE 160
Query: 700 AGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGR 736
             T  Y  P+    S+  +T+ D++  G +  E+ TGR
Sbjct: 161 VVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGR 198

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 44/225 (19%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +  +G+G  G V++     GE VAVK ++S R + S             + E+     +R
Sbjct: 14  QESIGKGRFGEVWRGKWR-GEEVAVK-IFSSREERSWFR----------EAEIYQTVMLR 61
Query: 591 HKNIVKLYCY-------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
           H+NI+            ++ L+   LV +Y  +G+L+D L++  V ++     K+A   A
Sbjct: 62  HENILGFIAADNKDNGTWTQLW---LVSDYHEHGSLFDYLNRYTVTVEGMI--KLALSTA 116
Query: 644 QGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
            GLA+LH  ++       I HRD+KS NIL+  N    +AD G+A     R    + T  
Sbjct: 117 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA----VRHDSATDTID 172
Query: 699 IA-----GTYGYLAPEYAYSS------KATTKCDVYSFGVVLMEL 732
           IA     GT  Y+APE    S      ++  + D+Y+ G+V  E+
Sbjct: 173 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI 217

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYAPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+++D     KV DFG+AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLMIDQQGYIKVTDFGLAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 13  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 71
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 72  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 119
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 120 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDSELKILDFG 176
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 177 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 226

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 19  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSKPFQSIIHA- 77
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 78  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 125
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 126 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 182
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 183 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 232

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 44/225 (19%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +  +G+G  G V++     GE VAVK ++S R + S             + E+     +R
Sbjct: 11  QESIGKGRFGEVWRGKWR-GEEVAVK-IFSSREERSWFR----------EAEIYQTVMLR 58
Query: 591 HKNIVKLYCY-------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
           H+NI+            ++ L+   LV +Y  +G+L+D L++  V ++     K+A   A
Sbjct: 59  HENILGFIAADNKDNGTWTQLW---LVSDYHEHGSLFDYLNRYTVTVEGMI--KLALSTA 113
Query: 644 QGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
            GLA+LH  ++       I HRD+KS NIL+  N    +AD G+A     R    + T  
Sbjct: 114 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA----VRHDSATDTID 169
Query: 699 IA-----GTYGYLAPEYAYSS------KATTKCDVYSFGVVLMEL 732
           IA     GT  Y+APE    S      ++  + D+Y+ G+V  E+
Sbjct: 170 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI 214

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 12  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 70
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 71  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 118
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 119 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 175
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 176 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 9   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 67
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 68  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 115
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 116 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 172
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 173 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 222

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 9   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 67
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 68  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 115
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 116 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDSELKILDFG 172
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 173 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 222

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKXQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 12  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 70
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 71  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 118
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 119 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 175
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 176 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 6   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 64
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 65  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 112
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 113 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 169
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 170 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 219

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 104 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 159
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 160 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWTLCGTPEYLAPEI 210
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 211 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 13  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 71
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 72  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 119
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 120 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 176
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 177 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 226

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 9   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 67
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 68  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 115
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 116 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 172
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 173 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 222

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +A+        D        T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 LAR------HTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 9   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 67
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 68  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 115
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 116 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 172
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 173 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 222

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + +G G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 12  TFYRQELNKTIWEVPERYQNLSPIGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 70
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 71  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 118
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 119 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFG 175
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 176 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 19  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 77
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 78  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 125
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 126 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 182
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 183 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 232

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 19  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 77
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 78  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 125
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 126 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 182
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 183 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 232

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 30  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 88
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 89  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 136
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 137 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 193
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 194 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 243

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 32/224 (14%)
Query: 523 EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E+ E     + VG G  G+V    D  +G  VAVKKL      +  +        K    
Sbjct: 15  EVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA--------KRTYR 66
Query: 582 EVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           E+  L +++H+N++ L   F+       + ++ +  ++   +L       +V     T  
Sbjct: 67  ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL-----NNIVKCAKLTDD 121
Query: 637 KIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD 693
            + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG+     AR   D
Sbjct: 122 HVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGL-----ARHTDD 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
             T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 174 EMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 29/220 (13%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L   R       TD  ++ + L TE   + + 
Sbjct: 97  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--NRI------TDIGEVSQFL-TEGIIMKDF 147
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 148 SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 203
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT-- 702
           G+ +L        +HRD+ + N +LD  +  KVADFG+A+ +  +   DS          
Sbjct: 204 GMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLP 259
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
             ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 260 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 299

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +A+        D        T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 LAR------HTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 18  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 76
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 77  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 124
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 125 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 181
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 182 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 231

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 14  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 72
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 73  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 120
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 121 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 177
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 178 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 4   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 62
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 63  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 110
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 111 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 167
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 168 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 217

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 89  LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 144
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 145 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWTLCGTPEYLAPEI 195
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 196 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 233

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 14  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 72
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 73  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 120
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 121 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 177
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 178 L-----ARHTADEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 14  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 72
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 73  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 120
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 121 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 177
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 178 L-----ARHTADEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 31/216 (14%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G    + D  S E+VAVK  + +R +         ++D+ +K E+    ++RH 
Sbjct: 26  IGSGNFGVARLMRDKQSNELVAVK--YIERGE---------KIDENVKREIINHRSLRHP 74
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQ---GLAY 648
           NIV+      +     +V EY   G L++ + + G    D     +  F   Q   G++Y
Sbjct: 75  NIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSED-----EARFFFQQLISGVSY 129
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            H      + HRD+K  N LLD +  P  K+ DFG +K         ST     GT  Y+
Sbjct: 130 CH---AMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTV----GTPAYI 182
Query: 707 APEYAYSSKATTK-CDVYSFGVVLMELITGRKPVED 741
           APE     +   K  DV+S GV L  ++ G  P ED
Sbjct: 183 APEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 218

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 25/213 (11%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G    + D  + E+VAVK  + +R +         ++D+ +K E+    ++RH 
Sbjct: 27  IGAGNFGVARLMRDKQANELVAVK--YIERGE---------KIDENVKREIINHRSLRHP 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
           NIV+      +     +V EY   G L++ + + G    D     +  F   Q ++ + +
Sbjct: 76  NIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSED-----EARFFFQQLISGVSY 130
Query: 652 GLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
                + HRD+K  N LLD +  P  K+ADFG +K         S      GT  Y+APE
Sbjct: 131 AHAMQVAHRDLKLENTLLDGSPAPRLKIADFGYSKASVLHSQPKSAV----GTPAYIAPE 186
Query: 710 YAYSSKATTK-CDVYSFGVVLMELITGRKPVED 741
                +   K  DV+S GV L  ++ G  P ED
Sbjct: 187 VLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 219

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+P G ++  L + +     P     A  +     YLH   
Sbjct: 124 LVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 180
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE   S
Sbjct: 181 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILS 233
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 234 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 268

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 3   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 61
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 62  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 109
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 110 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 166
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 167 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 4   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 62
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 63  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 110
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 111 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 167
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 168 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 217

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 14  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 72
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 73  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 120
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 121 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 177
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 178 L-----ARHTADEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 29/220 (13%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 39  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 89
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 90  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 145
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT-- 702
           G+ +L        +HRD+ + N +LD  +  KVADFG+A+ +  +   DS          
Sbjct: 146 GMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF-DSVHNKTGAKLP 201
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
             ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 202 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 241

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 29/220 (13%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 36  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 86
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 87  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 142
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT-- 702
           G+ +L        +HRD+ + N +LD  +  KVADFG+A+ +  +   DS          
Sbjct: 143 GMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF-DSVHNKTGAKLP 198
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
             ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 199 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 238

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 26  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 84
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 85  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 132
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 133 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 189
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 190 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 239

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 29/220 (13%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 43  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 93
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 94  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 149
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT-- 702
           G+ +L        +HRD+ + N +LD  +  KVADFG+A+ +  +   DS          
Sbjct: 150 GMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF-DSVHNKTGAKLP 205
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
             ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 206 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 245

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 96  LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 151
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 152 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 202
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 203 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 240

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 27  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 85
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 86  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 133
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 134 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 190
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 191 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 240

>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation Length = 293

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 2   EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 57
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEYM-PNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E M P  +L+D +  +G +  +   
Sbjct: 58  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERMEPVQDLFDFITERGALQEE--L 115
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 116 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 167
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 168 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 226
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 227 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 256

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 5   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 63
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 64  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 111
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 112 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 168
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 169 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 218

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 104 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 159
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 160 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 210
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 211 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 29/220 (13%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 88
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 89  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 144
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT-- 702
           G+ +L        +HRD+ + N +LD  +  KVADFG+A+ +  +   DS          
Sbjct: 145 GMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF-DSVHNKTGAKLP 200
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
             ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 201 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D+ SG  +AVKKL      +  + 
Sbjct: 36  TFYRQELNKTIWEVPERYQTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQSIIHA- 94
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 95  -------KRTYRELRLLKHMKHENVIGLLDVFTPATSLEEFNDVYLVTHLMGADL----- 142
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 143 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 199
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +        D++S G ++ EL+TGR
Sbjct: 200 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGR 249

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD 661
           S+LY   +V EY P G ++  L + +     P     A  +     YLH      +I+RD
Sbjct: 115 SNLY---MVMEYAPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS---LDLIYRD 167
Query: 662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCD 721
           +K  N+++D     KV DFG AK ++ R      T  + GT  YLAPE   S       D
Sbjct: 168 LKPENLMIDQQGYIKVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILSKGYNKAVD 221
Query: 722 VYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
            ++ GV++ E+  G  P    F D    IY
Sbjct: 222 WWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 3   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 61
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 62  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 109
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 110 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 166
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +A+        D        T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 167 LAR------HTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+P G ++  L + +     P     A  +     YLH   
Sbjct: 103 LVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 159
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE   S
Sbjct: 160 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILS 212
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 104 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 159
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 160 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 210
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 211 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY P G ++  L + +     P     A  +     YLH
Sbjct: 104 LVKLEFSFKDNSNLY---MVMEYAPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 159
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+++D     KV DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 160 S---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 210
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 211 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYAPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+++D     KV DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+P G ++  L + +     P     A  +     YLH   
Sbjct: 103 LVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 159
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE   S
Sbjct: 160 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILS 212
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 42/234 (17%)
Query: 520 DQREILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D+ EI+E       +G G  G V       +G+ VA+KK+ +    V+ +        K 
Sbjct: 55  DEYEIIET------IGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNA--------KR 100
Query: 579 LKTEVETLGNIRHKNIVKL---------YCYFSSLYCNLLVYEYMPNGNLWDALHKG--- 626
              E++ L + +H NI+ +         Y  F S+Y  L + E     +L   +H     
Sbjct: 101 TLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME----SDLHQIIHSSQPL 156
Query: 627 -LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV 685
            L H+ +       + + +GL Y+H    + +IHRD+K +N+L++ N + K+ DFG+A+ 
Sbjct: 157 TLEHVRY-----FLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARG 208
Query: 686 LQARGGKDST-TTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRK 737
           L     +     T    T  Y APE   S  + T   D++S G +  E++  R+
Sbjct: 209 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQ 262

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 42/234 (17%)
Query: 520 DQREILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D+ EI+E       +G G  G V       +G+ VA+KK+ +    V+ +        K 
Sbjct: 54  DEYEIIET------IGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNA--------KR 99
Query: 579 LKTEVETLGNIRHKNIVKL---------YCYFSSLYCNLLVYEYMPNGNLWDALHKG--- 626
              E++ L + +H NI+ +         Y  F S+Y  L + E     +L   +H     
Sbjct: 100 TLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME----SDLHQIIHSSQPL 155
Query: 627 -LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV 685
            L H+ +       + + +GL Y+H    + +IHRD+K +N+L++ N + K+ DFG+A+ 
Sbjct: 156 TLEHVRY-----FLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARG 207
Query: 686 LQARGGKDST-TTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRK 737
           L     +     T    T  Y APE   S  + T   D++S G +  E++  R+
Sbjct: 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQ 261

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 29/220 (13%)
Query: 534 VGQGGSGTVYKIDL--NSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G VY   L  N G+ +  AVK L           TD  ++ + L TE   + + 
Sbjct: 38  IGRGHFGCVYHGTLLDNDGKKIHCAVKSL--------NRITDIGEVSQFL-TEGIIMKDF 88
Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT-RHKIAFG--VAQ 644
            H N++ L   C   S    L+V  YM +G+L + +     +   PT +  I FG  VA+
Sbjct: 89  SHPNVLSLLGIC-LRSEGSPLVVLPYMKHGDLRNFIRNETHN---PTVKDLIGFGLQVAK 144
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT-- 702
           G+ +L        +HRD+ + N +LD  +  KVADFG+A+ +  +   DS          
Sbjct: 145 GMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF-DSVHNKTGAKLP 200
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
             ++A E   + K TTK DV+SFGV+L EL+T G  P  D
Sbjct: 201 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 104 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 159
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 160 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 210
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 211 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+P G ++  L + +     P     A  +     YLH   
Sbjct: 103 LVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 159
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE   S
Sbjct: 160 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILS 212
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+P G ++  L + +     P     A  +     YLH   
Sbjct: 104 LVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 160
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE   S
Sbjct: 161 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILS 213
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 214 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD 661
           S+LY   +V EY P G ++  L + +     P     A  +     YLH      +I+RD
Sbjct: 115 SNLY---MVMEYAPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS---LDLIYRD 167
Query: 662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCD 721
           +K  N+++D     KV DFG AK ++ R      T  + GT  YLAPE   S       D
Sbjct: 168 LKPENLMIDQQGYIKVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILSKGYNKAVD 221
Query: 722 VYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
            ++ GV++ E+  G  P    F D    IY
Sbjct: 222 WWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEYSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 104 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLH 159
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 160 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 210
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 211 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 96  LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLH 151
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 152 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 202
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 203 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 240

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 33/222 (14%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI- 589
           ++ +G+G  G V K  +    +     +  +R K  AS  D     +    E+E L  + 
Sbjct: 27  QDVIGEGNFGQVLKARIKKDGLRMDAAI--KRMKEYASKDDH----RDFAGELEVLCKLG 80
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH------------- 636
            H NI+ L           L  EY P+GNL D L K  V    P                
Sbjct: 81  HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 140
Query: 637 --KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
               A  VA+G+ YL        IHR++ + NIL+  NY  K+ADFG+++      G++ 
Sbjct: 141 LLHFAADVARGMDYLSQ---KQFIHRNLAARNILVGENYVAKIADFGLSR------GQEV 191
Query: 695 TTTVIAGT--YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
                 G     ++A E    S  TT  DV+S+GV+L E+++
Sbjct: 192 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 233

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVPGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYAPGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+++D     KV DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 32/210 (15%)
Query: 602 SSLYCNLLVYEYMPNGNL--WDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIH 659
           S   C  +  E+   G L  W    +G   LD     ++   + +G+ Y+H      +IH
Sbjct: 104 SKTKCLFIQMEFCDKGTLEQWIEKRRG-EKLDKVLALELFEQITKGVDYIHS---KKLIH 159
Query: 660 RDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK 719
           RD+K +NI L    Q K+ DFG+   L+  G +    T   GT  Y++PE   S     +
Sbjct: 160 RDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKR----TRSKGTLRYMSPEQISSQDYGKE 215
Query: 720 CDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM-EVLDKKLSGSFRDE 778
            D+Y+ G++L EL+      +  F  +K          D ++GI+ ++ DKK        
Sbjct: 216 VDLYALGLILAELL---HVCDTAFETSKFF-------TDLRDGIISDIFDKK-----EKT 260
Query: 779 MIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
           ++Q L       SK P  RP  +E+++ L 
Sbjct: 261 LLQKL------LSKKPEDRPNTSEILRTLT 284

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 32/224 (14%)
Query: 523 EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E+ E     + VG G  G+V    D  +G  VAVKKL      +  +        K    
Sbjct: 25  EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA--------KRTYR 76
Query: 582 EVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           E+  L +++H+N++ L   F+       + ++ +  ++   +L       +V     T  
Sbjct: 77  ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL-----NNIVKCQKLTDD 131
Query: 637 KIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD 693
            + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG+     AR   D
Sbjct: 132 HVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGL-----ARHTDD 183
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
             T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 184 EMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 226

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD 661
           S+LY   +V EY P G ++  L + +     P     A  +     YLH      +I+RD
Sbjct: 115 SNLY---MVMEYAPGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLHS---LDLIYRD 167
Query: 662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCD 721
           +K  N+++D     KV DFG AK ++ R      T  + GT  YLAPE   S       D
Sbjct: 168 LKPENLMIDQQGYIKVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILSKGYNKAVD 221
Query: 722 VYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
            ++ GV++ E+  G  P    F D    IY
Sbjct: 222 WWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 33/289 (11%)
Query: 531 KNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           + K+G+G    VY+   L  G  VA+KK+       + +  D ++       E++ L  +
Sbjct: 37  EKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIK-------EIDLLKQL 89
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-----HKGLVHLDWPTRHKIAFGVAQ 644
            H N++K Y  F       +V E    G+L   +      K L+    P R    + V Q
Sbjct: 90  NHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLI----PERTVWKYFV-Q 144
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
             + L H     ++HRDIK  N+ +      K+ D G+ +   +   K +    + GT  
Sbjct: 145 LCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS---KTTAAHSLVGTPY 201
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           Y++PE  + +    K D++S G +L E+   + P    +GD  N +Y +  K++  +   
Sbjct: 202 YMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPF---YGDKMN-LYSLCKKIEQCD--- 254
Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC 813
                  S  + +E+ Q++ +   C +  P  RP +  V  +      C
Sbjct: 255 --YPPLPSDHYSEELRQLVNM---CINPDPEKRPDVTYVYDVAKRMHAC 298

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 55/286 (19%)
Query: 535 GQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNI 594
            +G  G V+K  L + + VAVK            D    Q ++    E+ +   ++H+N+
Sbjct: 24  ARGRFGCVWKAQLMN-DFVAVKIF-------PLQDKQSWQSER----EIFSTPGMKHENL 71
Query: 595 VKLYC---YFSSLYCNL-LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           ++        S+L   L L+  +   G+L D L   ++   W     +A  +++GL+YLH
Sbjct: 72  LQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKGNII--TWNELCHVAETMSRGLSYLH 129
Query: 651 H--------GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
                    G    I HRD KS N+LL  +    +ADFG+A   +  G     T    GT
Sbjct: 130 EDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEP-GKPPGDTHGQVGT 188
Query: 703 YGYLAPEYA-----YSSKATTKCDVYSFGVVLMELITGRK-----------PVEDDFGDN 746
             Y+APE       +   A  + D+Y+ G+VL EL++  K           P E++ G +
Sbjct: 189 RRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADGPVDEYMLPFEEEIGQH 248
Query: 747 KNIIYWVSIKVDTKEGIME-VLDKKLSGSFRDEMIQVLRIAIRCTS 791
            ++           E + E V+ KK+  + +D  ++   +A  C +
Sbjct: 249 PSL-----------EELQEVVVHKKMRPTIKDHWLKHPGLAQLCVT 283

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 27  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 85
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 86  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 133
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 134 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 190
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D     +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 191 L-----ARHTDDEMXGXVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 240

>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) Bound To A 2-(aminothiazoly)phenol (cmp2) Length = 336

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           + ++ RE +  MT + +VG+G  G V+++ D  +G   AVKK+     ++     ++L  
Sbjct: 49  VDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKV-----RLEVFRVEELVA 103
Query: 576 DKGLKTE--VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDW 632
             GL +   V   G +R    V ++             E +  G+L   + + G +  D 
Sbjct: 104 CAGLSSPRIVPLYGAVREGPWVNIF------------MELLEGGSLGQLIKQMGCLPED- 150
Query: 633 PTRHKIAFGVA-QGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARG 690
             R     G A +GL YLH      I+H D+K+ N+LL  +  +  + DFG A  LQ  G
Sbjct: 151 --RALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205
Query: 691 GKDS--TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF 743
              S  T   I GT  ++APE         K D++S   +++ ++ G  P    F
Sbjct: 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF 260

>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase (nik) Length = 352

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           + ++ RE +  MT + +VG+G  G V+++ D  +G   AVKK+     ++     ++L  
Sbjct: 65  VDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKV-----RLEVFRVEELVA 119
Query: 576 DKGLKTE--VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDW 632
             GL +   V   G +R    V ++             E +  G+L   + + G +  D 
Sbjct: 120 CAGLSSPRIVPLYGAVREGPWVNIF------------MELLEGGSLGQLIKQMGCLPED- 166
Query: 633 PTRHKIAFGVA-QGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARG 690
             R     G A +GL YLH      I+H D+K+ N+LL  +  +  + DFG A  LQ  G
Sbjct: 167 --RALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 221
Query: 691 GKDS--TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF 743
              S  T   I GT  ++APE         K D++S   +++ ++ G  P    F
Sbjct: 222 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF 276

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 59/309 (19%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K ++G+G  G V+  + ++      K L + +    AS++ +    +  + E E L  ++
Sbjct: 46  KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR----QDFQREAELLTMLQ 101
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-------------------GLVHLD 631
           H++IV+ +   +     L+V+EYM +G+L   L                     GL  L 
Sbjct: 102 HQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL- 160
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA--- 688
                 +A  VA G+ YL  GL    +HRD+ + N L+      K+ DFG+++ + +   
Sbjct: 161 ----LAVASQVAAGMVYLA-GL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 213
Query: 689 -RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDN 746
            R G  +   +      ++ PE     K TT+ DV+SFGVVL E+ T G++P        
Sbjct: 214 YRVGGRTMLPIR-----WMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQP-------- 260
Query: 747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV--- 803
                W   ++   E I  +   +     R    +V  I   C  + P  R ++ +V   
Sbjct: 261 -----W--YQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR 313
Query: 804 VQLLAEADP 812
           +Q LA+A P
Sbjct: 314 LQALAQAPP 322

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 31/183 (16%)
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKG---------- 626
           + L +E   L  + H +++KLY   S     LL+ EY   G+L   L +           
Sbjct: 71  RDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGS 130
Query: 627 -----LVHLDWPTRHKIAFG--------VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY 673
                   LD P    +  G        ++QG+ YL       ++HRD+ + NIL+    
Sbjct: 131 GGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MKLVHRDLAARNILVAEGR 187
Query: 674 QPKVADFGIAKVLQARGGKDSTTTVIAGT--YGYLAPEYAYSSKATTKCDVYSFGVVLME 731
           + K++DFG+++ +     +DS      G     ++A E  +    TT+ DV+SFGV+L E
Sbjct: 188 KMKISDFGLSRDVYE---EDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWE 244
Query: 732 LIT 734
           ++T
Sbjct: 245 IVT 247

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 25/216 (11%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVK--KLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           ++G G  GTVYK  D +SG  VA+K  ++ +    +  S   ++ L + L+         
Sbjct: 11  EIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEA-------F 63
Query: 590 RHKNIVKLY--CYFSSLYCNL---LVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVA 643
            H N+V+L   C  S     +   LV+E++ + +L   L K     L   T   +     
Sbjct: 64  EHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQFL 122
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           +GL +LH      I+HRD+K  NIL+      K+ADFG+A++   +   D        T 
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALDPVVV----TL 175
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
            Y APE    S   T  D++S G +  E+   RKP+
Sbjct: 176 WYRAPEVLLQSTYATPVDMWSVGCIFAEMFR-RKPL 210

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 31/183 (16%)
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKG---------- 626
           + L +E   L  + H +++KLY   S     LL+ EY   G+L   L +           
Sbjct: 71  RDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGS 130
Query: 627 -----LVHLDWPTRHKIAFG--------VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY 673
                   LD P    +  G        ++QG+ YL       ++HRD+ + NIL+    
Sbjct: 131 GGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MSLVHRDLAARNILVAEGR 187
Query: 674 QPKVADFGIAKVLQARGGKDSTTTVIAGT--YGYLAPEYAYSSKATTKCDVYSFGVVLME 731
           + K++DFG+++ +     +DS      G     ++A E  +    TT+ DV+SFGV+L E
Sbjct: 188 KMKISDFGLSRDVYE---EDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWE 244
Query: 732 LIT 734
           ++T
Sbjct: 245 IVT 247

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 48/230 (20%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +GQG  G V K  +       A+KK+     K+S            + +EV  L ++ H+
Sbjct: 14  LGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLST-----------ILSEVXLLASLNHQ 62
Query: 593 NIVKLYCYF----------------SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
            +V+ Y  +                S+L+      EY  N  L+D +H   ++       
Sbjct: 63  YVVRYYAAWLERRNFVKPXTAVKKKSTLFIQX---EYCENRTLYDLIHSENLNQQRDEYW 119
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR------- 689
           ++   + + L+Y+H      IIHR++K  NI +D +   K+ DFG+AK +          
Sbjct: 120 RLFRQILEALSYIHS---QGIIHRNLKPXNIFIDESRNVKIGDFGLAKNVHRSLDILKLD 176
Query: 690 -----GGKDSTTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELI 733
                G  D+ T+ I GT  Y+A E    +     K D YS G++  E I
Sbjct: 177 SQNLPGSSDNLTSAI-GTAXYVATEVLDGTGHYNEKIDXYSLGIIFFEXI 225

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYAPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+++D     +V DFG+AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLMIDQQGYIQVTDFGLAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 120/295 (40%), Gaps = 63/295 (21%)
Query: 534 VGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G GG G V+K      G+   +K++     K                 EV+ L  + H 
Sbjct: 19  IGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER--------------EVKALAKLDHV 64
Query: 593 NIVKLY-CY---------------FSSLYCNLLVYEYMPNGNL--WDALHKGLVHLDWPT 634
           NIV    C+                S   C  +  E+   G L  W    +G   LD   
Sbjct: 65  NIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG-EKLDKVL 123
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
             ++   + +G+ Y+H      +I+RD+K +NI L    Q K+ DFG+   L+  G +  
Sbjct: 124 ALELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRXR 180
Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
           +     GT  Y++PE   S     + D+Y+ G++L EL+      +  F  +K       
Sbjct: 181 S----KGTLRYMSPEQISSQDYGKEVDLYALGLILAELL---HVCDTAFETSKFF----- 228
Query: 755 IKVDTKEGIM-EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
              D ++GI+ ++ DKK        ++Q L       SK P  RP  +E+++ L 
Sbjct: 229 --TDLRDGIISDIFDKK-----EKTLLQKL------LSKKPEDRPNTSEILRTLT 270

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 24/217 (11%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR- 590
           ++G G  GTVYK  D +SG  VA+K +     +V         L      EV  L  +  
Sbjct: 16  EIGVGAYGTVYKARDPHSGHFVALKSV-----RVPNGGGGGGGLPISTVREVALLRRLEA 70
Query: 591 --HKNIVKLY--CYFSSLYCNL---LVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGV 642
             H N+V+L   C  S     +   LV+E++ + +L   L K     L   T   +    
Sbjct: 71  FEHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQF 129
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            +GL +LH      I+HRD+K  NIL+      K+ADFG+A++   +       T +  T
Sbjct: 130 LRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQ----MALTPVVVT 182
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
             Y APE    S   T  D++S G +  E+   RKP+
Sbjct: 183 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMFR-RKPL 218

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 126 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 182
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 183 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 220

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 59/309 (19%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K ++G+G  G V+  + ++      K L + +    AS++ +    +  + E E L  ++
Sbjct: 23  KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR----QDFQREAELLTMLQ 78
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-------------------GLVHLD 631
           H++IV+ +   +     L+V+EYM +G+L   L                     GL  L 
Sbjct: 79  HQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL- 137
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA--- 688
                 +A  VA G+ YL  GL    +HRD+ + N L+      K+ DFG+++ + +   
Sbjct: 138 ----LAVASQVAAGMVYLA-GL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 190
Query: 689 -RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDN 746
            R G  +   +      ++ PE     K TT+ DV+SFGVVL E+ T G++P        
Sbjct: 191 YRVGGRTMLPI-----RWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQP-------- 237
Query: 747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV--- 803
                W   ++   E I  +   +     R    +V  I   C  + P  R ++ +V   
Sbjct: 238 -----W--YQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR 290
Query: 804 VQLLAEADP 812
           +Q LA+A P
Sbjct: 291 LQALAQAPP 299

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 59/309 (19%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K ++G+G  G V+  + ++      K L + +    AS++ +    +  + E E L  ++
Sbjct: 17  KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR----QDFQREAELLTMLQ 72
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-------------------GLVHLD 631
           H++IV+ +   +     L+V+EYM +G+L   L                     GL  L 
Sbjct: 73  HQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL- 131
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA--- 688
                 +A  VA G+ YL  GL    +HRD+ + N L+      K+ DFG+++ + +   
Sbjct: 132 ----LAVASQVAAGMVYLA-GL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 184
Query: 689 -RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDN 746
            R G  +   +      ++ PE     K TT+ DV+SFGVVL E+ T G++P        
Sbjct: 185 YRVGGRTMLPI-----RWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQP-------- 231
Query: 747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV--- 803
                W   ++   E I  +   +     R    +V  I   C  + P  R ++ +V   
Sbjct: 232 -----W--YQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR 284
Query: 804 VQLLAEADP 812
           +Q LA+A P
Sbjct: 285 LQALAQAPP 293

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 35/214 (16%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG G  G+V   ID  SGE VA+KKL    ++   S+       K    E+  L +++H+
Sbjct: 50  VGSGAYGSVCSAIDKRSGEKVAIKKL----SRPFQSEI----FAKRAYRELLLLKHMQHE 101
Query: 593 NIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ-- 644
           N++ L   F+      + Y   LV  +M        L K ++ +++ +  KI + V Q  
Sbjct: 102 NVIGLLDVFTPASSLRNFYDFYLVMPFMQTD-----LQK-IMGMEF-SEEKIQYLVYQML 154
Query: 645 -GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            GL Y+H    + ++HRD+K  N+ ++ + + K+ DFG+A+        D+  T    T 
Sbjct: 155 KGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLAR------HADAEMTGYVVTR 205
Query: 704 GYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
            Y APE   S     +  D++S G ++ E++TG+
Sbjct: 206 WYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK 239

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 123/288 (42%), Gaps = 48/288 (16%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKL----WSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
           K+ +  SG ++K      ++V VK L    WS R              +    E   L  
Sbjct: 17  KLNENHSGELWKGRWQGNDIV-VKVLKVRDWSTRKS------------RDFNEECPRLRI 63
Query: 589 IRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQG 645
             H N++ +   C         L+  +MP G+L++ LH+G    +D     K A  +A+G
Sbjct: 64  FSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARG 123
Query: 646 LAYLHHGLLSPIIHRD-IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           +A+LH   L P+I R  + S ++++D +   +++   +    Q+ G   +          
Sbjct: 124 MAFLH--TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAP--------A 173
Query: 705 YLAPEYAYSSKATT---KCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
           ++APE        T     D++SF V+L EL+T   P    F D  N+   + +KV   E
Sbjct: 174 WVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVP----FADLSNME--IGMKV-ALE 226
Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           G+   +   +S         V ++   C ++ PA RP  + +V +L +
Sbjct: 227 GLRPTIPPGISP-------HVSKLMKICMNEDPAKRPKFDMIVPILEK 267

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 27/222 (12%)
Query: 523 EILEAMTEKNKVGQGGSGTVYKIDLNSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLK 580
           +I +  T +N +G+G  G V KI +  G  +  A KK+     K    D D+       K
Sbjct: 23  DINQYYTLENTIGRGSWGEV-KIAVQKGTRIRRAAKKI----PKYFVEDVDRF------K 71
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWD-ALHKGLVHLDWPTRHKIA 639
            E+E + ++ H NI++LY  F       LV E    G L++  +HK +       R  I 
Sbjct: 72  QEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAAR--IM 129
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILL--DVNYQP-KVADFGIAKVLQARGGKDSTT 696
             V   +AY H      + HRD+K  N L   D    P K+ DFG+A   +   GK   T
Sbjct: 130 KDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP--GKMMRT 184
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            V  GT  Y++P+         +CD +S GV++  L+ G  P
Sbjct: 185 KV--GTPYYVSPQ-VLEGLYGPECDEWSAGVMMYVLLCGYPP 223

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ D+G
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDYG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+  G ++  L + +     P     A  +     YLH   
Sbjct: 103 LVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 159
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  +AGT  YLAPE   S
Sbjct: 160 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLAGTPEYLAPEIILS 212
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 26/236 (11%)
Query: 506 FFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTK 564
           ++P  V+  H    D  +I E      ++G G  G V+++ +  +G   A K +      
Sbjct: 143 YYPQPVEIKHDHVLDHYDIHE------ELGTGAFGVVHRVTERATGNNFAAKFV------ 190
Query: 565 VSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH 624
           ++  ++D+    + ++ E++T+  +RH  +V L+  F      +++YE+M  G L++ + 
Sbjct: 191 MTPHESDK----ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVA 246
Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY--QPKVADFGI 682
                +      +    V +GL ++H    +  +H D+K  NI+       + K+ DFG+
Sbjct: 247 DEHNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGL 303
Query: 683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
              L  +     +  V  GT  + APE A         D++S GV+   L++G  P
Sbjct: 304 TAHLDPK----QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSP 355

>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik) Length = 356

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 31/230 (13%)
Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           + ++ RE +   T + ++G+G  G V+++ D  +G   AVKK+     ++     ++L  
Sbjct: 65  VDYEYREEVHWATHQLRLGRGSFGEVHRMEDKQTGFQCAVKKV-----RLEVFRAEELMA 119
Query: 576 DKGLKTE--VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDW 632
             GL +   V   G +R    V ++             E +  G+L   +  +G +  D 
Sbjct: 120 CAGLTSPRIVPLYGAVREGPWVNIF------------MELLEGGSLGQLVKEQGCLPED- 166
Query: 633 PTRHKIAFGVA-QGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARG 690
             R     G A +GL YLH      I+H D+K+ N+LL  +     + DFG A  LQ  G
Sbjct: 167 --RALYYLGQALEGLEYLHS---RRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQPDG 221
Query: 691 -GKDS-TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            GKD  T   I GT  ++APE         K DV+S   +++ ++ G  P
Sbjct: 222 LGKDLLTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNGCHP 271

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 31/183 (16%)
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKG---------- 626
           + L +E   L  + H +++KLY   S     LL+ EY   G+L   L +           
Sbjct: 71  RDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGS 130
Query: 627 -----LVHLDWPTRHKIAFG--------VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY 673
                   LD P    +  G        ++QG+ YL       ++HRD+ + NIL+    
Sbjct: 131 GGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MKLVHRDLAARNILVAEGR 187
Query: 674 QPKVADFGIAKVLQARGGKDSTTTVIAGT--YGYLAPEYAYSSKATTKCDVYSFGVVLME 731
           + K++DFG+++ +     +DS      G     ++A E  +    TT+ DV+SFGV+L E
Sbjct: 188 KMKISDFGLSRDVYE---EDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWE 244
Query: 732 LIT 734
           ++T
Sbjct: 245 IVT 247

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 27/222 (12%)
Query: 523 EILEAMTEKNKVGQGGSGTVYKIDLNSGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLK 580
           +I +  T +N +G+G  G V KI +  G  +  A KK+     K    D D+       K
Sbjct: 6   DINQYYTLENTIGRGSWGEV-KIAVQKGTRIRRAAKKI----PKYFVEDVDRF------K 54
Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWD-ALHKGLVHLDWPTRHKIA 639
            E+E + ++ H NI++LY  F       LV E    G L++  +HK +       R  I 
Sbjct: 55  QEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAAR--IM 112
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILL--DVNYQP-KVADFGIAKVLQARGGKDSTT 696
             V   +AY H      + HRD+K  N L   D    P K+ DFG+A   +   GK   T
Sbjct: 113 KDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP--GKMMRT 167
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            V  GT  Y++P+         +CD +S GV++  L+ G  P
Sbjct: 168 KV--GTPYYVSPQ-VLEGLYGPECDEWSAGVMMYVLLCGYPP 206

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQ-RTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           VG G  G V   +D  +G  VA+KKL+   ++++ A         K    E+  L ++RH
Sbjct: 33  VGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFA---------KRAYRELRLLKHMRH 83
Query: 592 KNIVKLYCYFS---SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---G 645
           +N++ L   F+   +L      Y  MP   +   L K + H +     +I F V Q   G
Sbjct: 84  ENVIGLLDVFTPDETLDDFTDFYLVMPF--MGTDLGKLMKH-EKLGEDRIQFLVYQMLKG 140
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L Y+H    + IIHRD+K  N+ ++ + + K+ DFG+A+  QA    DS       T  Y
Sbjct: 141 LRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLAR--QA----DSEMXGXVVTRWY 191
Query: 706 LAPEYAYS-SKATTKCDVYSFGVVLMELITGR 736
            APE   +  + T   D++S G ++ E+ITG+
Sbjct: 192 RAPEVILNWMRYTQTVDIWSVGCIMAEMITGK 223

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 136 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 192
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 193 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 230

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 136 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 192
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 193 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 230

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 134 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 190
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 191 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 228

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 35/214 (16%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG G  G+V   ID  SGE VA+KKL    ++   S+       K    E+  L +++H+
Sbjct: 32  VGSGAYGSVCSAIDKRSGEKVAIKKL----SRPFQSEI----FAKRAYRELLLLKHMQHE 83
Query: 593 NIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ-- 644
           N++ L   F+      + Y   LV  +M        L K ++ L + +  KI + V Q  
Sbjct: 84  NVIGLLDVFTPASSLRNFYDFYLVMPFMQTD-----LQK-IMGLKF-SEEKIQYLVYQML 136
Query: 645 -GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            GL Y+H    + ++HRD+K  N+ ++ + + K+ DFG+A+        D+  T    T 
Sbjct: 137 KGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLAR------HADAEMTGYVVTR 187
Query: 704 GYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
            Y APE   S     +  D++S G ++ E++TG+
Sbjct: 188 WYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK 221

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 37  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 87
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 88  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKEAPEDLYKDFL 147
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 148 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 200
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 201 Y----KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 252
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 253 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 300
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 301 SELVEHLG 308

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K ++G+G    V + +   +G   A K + ++  K+SA D  +L+       E      +
Sbjct: 34  KEELGKGAFSVVRRCVHKTTGLEFAAKIINTK--KLSARDFQKLE------REARICRKL 85
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           +H NIV+L+        + LV++ +  G L++ +     + +    H I   + + +AY 
Sbjct: 86  QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQ-QILESIAYC 144
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           H    + I+HR++K  N+LL    +    K+ADFG+A  +             AGT GYL
Sbjct: 145 HS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN----DSEAWHGFAGTPGYL 197
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           +PE       +   D+++ GV+L  L+ G  P  D+
Sbjct: 198 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE 233

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY P G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYAPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+++D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLMIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 26/236 (11%)
Query: 506 FFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTK 564
           ++P  V+  H    D  +I E +      G G  G V+++ +  +G   A K +      
Sbjct: 37  YYPQPVEIKHDHVLDHYDIHEEL------GTGAFGVVHRVTERATGNNFAAKFV------ 84
Query: 565 VSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH 624
           ++  ++D+    + ++ E++T+  +RH  +V L+  F      +++YE+M  G L++ + 
Sbjct: 85  MTPHESDK----ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVA 140
Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY--QPKVADFGI 682
                +      +    V +GL ++H    +  +H D+K  NI+       + K+ DFG+
Sbjct: 141 DEHNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGL 197
Query: 683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
              L  +     +  V  GT  + APE A         D++S GV+   L++G  P
Sbjct: 198 TAHLDPK----QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSP 249

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           +H NI+ L   +       +V E M  G L D + +     +      + F + + + YL
Sbjct: 74  QHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREAS-AVLFTITKTVEYL 132
Query: 650 HHGLLSPIIHRDIKSTNIL-LDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           H      ++HRD+K +NIL +D +  P   ++ DFG AK L+A  G   T    A    +
Sbjct: 133 H---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTAN---F 186
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           +APE          CD++S GV+L  ++TG  P
Sbjct: 187 VAPEVLERQGYDAACDIWSLGVLLYTMLTGYTP 219

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 524 ILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
           +L+   +   +G G  G V    D   G  VAVKKL       S    +Q    +  + E
Sbjct: 22  VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKL-------SRPFQNQTHAKRAYR-E 73
Query: 583 VETLGNIRHKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +  L  + HKNI+ L   F+            LV E M + NL   +H  L H       
Sbjct: 74  LVLLKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIHMELDH------E 126
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
           ++++ + Q L  + H   + IIHRD+K +NI++  +   K+ DFG+A+        +   
Sbjct: 127 RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----ACTNFMM 182
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITG 735
           T    T  Y APE           D++S G ++ EL+ G
Sbjct: 183 TPYVVTRYYRAPEVILGMGYAANVDIWSVGCIMGELVKG 221

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 85
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 86  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 145
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 146 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 199 X----KDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 250
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 251 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 298
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 299 SELVEHLG 306

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 51/241 (21%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 11  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 67
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
             E   + ++ + ++ +L   C  S++    L+ + MP G L          LD+   HK
Sbjct: 68  --EAYVMASVDNPHVCRLLGICLTSTVQ---LIMQLMPFGXL----------LDYVREHK 112
Query: 638 IAFG----------VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL- 686
              G          +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L 
Sbjct: 113 DNIGSQYLLNWCVQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLG 169
Query: 687 ------QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPV 739
                  A GGK            ++A E       T + DV+S+GV + EL+T G KP 
Sbjct: 170 AEEKEYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPY 221
Query: 740 E 740
           +
Sbjct: 222 D 222

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 30  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 88
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 89  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 136
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 137 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 193
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D     +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 194 L-----ARHTDDEMXGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 243

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 85
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 86  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 145
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 146 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 199 Y----KDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 250
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 251 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 298
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 299 SELVEHLG 306

>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3) Length = 350

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           + ++ RE +  MT + ++G+G  G V+++ D  +G   AVKK+     ++     ++L  
Sbjct: 63  VDYEYREEVHWMTHQPRLGRGSFGEVHRMKDKQTGFQCAVKKV-----RLEVFRVEELVA 117
Query: 576 DKGLKTE--VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDW 632
             GL +   V   G +R    V ++             E +  G+L   + + G +  D 
Sbjct: 118 CAGLSSPRIVPLYGAVREGPWVNIF------------MELLEGGSLGQLIKQMGCLPED- 164
Query: 633 PTRHKIAFGVA-QGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARG 690
             R     G A +GL YLH      I+H D+K+ N+LL  +  +  + DFG A  LQ  G
Sbjct: 165 --RALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 219
Query: 691 GKDS--TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF 743
              S  T   I GT  ++APE         K D++S   +++ ++ G  P    F
Sbjct: 220 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF 274

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E + + N+ H+ +V+LY   +      ++ EYM NG L + L +           ++   
Sbjct: 69  EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKD 128
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V + + YL        +HRD+ + N L++     KV+DFG+++ +      D  T+ +  
Sbjct: 129 VCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL----DDEETSSVGS 181
Query: 702 TY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
            +   +  PE    SK ++K D+++FGV++ E+ + G+ P E
Sbjct: 182 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE 223

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 26  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 76
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 77  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 136
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 137 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 190 X----KDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 241
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 242 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 289
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 290 SELVEHLG 297

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%)
Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           I F+Q EI E       +G+G  G VY    + GEV A++ +      +   + DQL   
Sbjct: 30  IPFEQLEIGEL------IGKGRFGQVYHGRWH-GEV-AIRLI-----DIERDNEDQL--- 73
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           K  K EV      RH+N+V       S     ++        L+  +    + LD     
Sbjct: 74  KAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTR 133
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG---IAKVLQARGGKD 693
           +IA  + +G+ YLH      I+H+D+KS N+  D N +  + DFG   I+ VLQA G ++
Sbjct: 134 QIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQA-GRRE 188
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTK---------CDVYSFGVVLMELITGRKPVE 740
               +  G   +LAPE        T+          DV++ G +  EL     P +
Sbjct: 189 DKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFK 244

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 26  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 76
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 77  HIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 136
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 137 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 190 X----KDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 241
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 242 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 289
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 290 SELVEHLG 297

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 524 ILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
           +L+   +   +G G  G V    D   G  VAVKKL       S    +Q    +  + E
Sbjct: 20  VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKL-------SRPFQNQTHAKRAYR-E 71
Query: 583 VETLGNIRHKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +  L  + HKNI+ L   F+            LV E M + NL   +H  L H       
Sbjct: 72  LVLLKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIHMELDH------E 124
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
           ++++ + Q L  + H   + IIHRD+K +NI++  +   K+ DFG+A+        +   
Sbjct: 125 RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----ASTNFMM 180
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITG 735
           T    T  Y APE           D++S G ++ EL+ G
Sbjct: 181 TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKG 219

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 31/216 (14%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G    + D  S E+VAVK +  +  K++A+          +K E+    ++RH 
Sbjct: 27  IGSGNFGVARLMRDKQSNELVAVKYI-ERGEKIAAN----------VKREIINHRSLRHP 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQ---GLAY 648
           NIV+      +     +V EY   G L++ + + G    D     +  F   Q   G++Y
Sbjct: 76  NIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSED-----EARFFFQQLISGVSY 130
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            H      + HRD+K  N LLD +  P  K+ DFG +K         ST     GT  Y+
Sbjct: 131 CH---AMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTV----GTPAYI 183
Query: 707 APEYAYSSKATTK-CDVYSFGVVLMELITGRKPVED 741
           APE     +   K  DV+S GV L  ++ G  P ED
Sbjct: 184 APEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 219

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 14  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 70
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 71  --EAYVMASVDNPHVCRLLGICLTSTVQ---LIMQLMPFGCLLDYVREHKDNIGSQYLLN 125
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 126 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 176
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 177 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 225

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DF 
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFY 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 144/337 (42%), Gaps = 70/337 (20%)
Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQ 572
           D+ E+  E +T   ++GQG  G VY+    D+  GE    VAVK +       SAS  ++
Sbjct: 10  DEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRER 64
Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD- 631
           ++       E   +      ++V+L    S     L+V E M +G+L   L       + 
Sbjct: 65  IEF----LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAEN 120
Query: 632 -----WPTRH---KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
                 PT     ++A  +A G+AYL+       +HRD+ + N ++  ++  K+ DFG+ 
Sbjct: 121 NPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMT 177
Query: 684 KVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRK 737
           + +       +GGK            ++APE       TT  D++SFGVVL E+ +   +
Sbjct: 178 RDIXETDXXRKGGKGLLPV------RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQ 231
Query: 738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDE-------MIQVLRIAIRCT 790
           P +     N+ ++ +V                 + G + D+       +  ++R+   C 
Sbjct: 232 PYQG--LSNEQVLKFV-----------------MDGGYLDQPDNCPERVTDLMRM---CW 269
Query: 791 SKSPATRPTMNEVVQLLAEA-DPCRFESCKFPNKSNK 826
             +P  RPT  E+V LL +   P   E   F ++ NK
Sbjct: 270 QFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK 306

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 478 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 534
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 535 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 572

>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For Catalysis And Regulation Of Non-conventional Splicing Length = 434

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 129/307 (42%), Gaps = 69/307 (22%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G SGTV       G  VAVK++      ++        ++  L TE +      H N
Sbjct: 23  LGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIAL-------MEIKLLTESDD-----HPN 70
Query: 594 IVKLYC--------YFSSLYCNLLVYEYMPNGNLWD---ALHKGLVHLDWPTRHKIAFGV 642
           +++ YC        Y +   CNL + + + + N+ D    L K    +       +   +
Sbjct: 71  VIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPI------SLLRQI 124
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDV-------------NYQPKVADFGIAKVLQAR 689
           A G+A+LH      IIHRD+K  NIL+               N +  ++DFG+ K L + 
Sbjct: 125 ASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDS- 180
Query: 690 GGKDSTTTVI---AGTYGYLAPEYAYSS-------KATTKCDVYSFGVVLMELIT-GRKP 738
            G+ S  T +   +GT G+ APE    S       + T   D++S G V   +++ G+ P
Sbjct: 181 -GQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHP 239
Query: 739 VEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP 798
             D +    NII  +   +D  + +    D+ L     D + Q++          P  RP
Sbjct: 240 FGDKYSRESNIIRGI-FSLDEMKCLH---DRSLIAEATDLISQMI-------DHDPLKRP 288
Query: 799 TMNEVVQ 805
           T  +V++
Sbjct: 289 TAMKVLR 295

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 13  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 69
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 70  --EAYVMASVDNPHVCRLLGICLTSTVQ---LIMQLMPFGCLLDYVREHKDNIGSQYLLN 124
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 125 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 175
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 176 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 224

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 42/224 (18%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  GTVYK + +  GE V +     +  + ++   ++  LD     E   + ++ + 
Sbjct: 57  LGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILD-----EAYVMASVDNP 111
Query: 593 NIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWPTRHKIAFGVAQ 644
           ++ +L   C  S++    L+ + MP G L D +  HK  +     L+W         +A+
Sbjct: 112 HVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLNW------CVQIAK 162
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------QARGGKDSTTT 697
           G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L        A GGK     
Sbjct: 163 GMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK- 218
Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
                  ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 219 -------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 255

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG
Sbjct: 114 NNIVKSQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDSELKILDFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +      R   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----CRHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 10  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 66
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 67  --EAYVMASVDNPHVCRLLGICLTSTVQ---LIMQLMPFGCLLDYVREHKDNIGSQYLLN 121
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 122 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 172
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 173 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 7   RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 63
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 64  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 118
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 119 WCVQ------IAEGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 169
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 170 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 218

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 10  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 66
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 67  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGXLLDYVREHKDNIGSQYLLN 121
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 122 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 172
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 173 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 11  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 67
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 68  --EAYVMASVDNPHVCRLLGICLTSTVQ---LIMQLMPFGCLLDYVREHKDNIGSQYLLN 122
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 123 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 173
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 174 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 222

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 479 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 535
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 536 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 573

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 26/219 (11%)
Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K ++G+G    V + +   +G   A K +     K+SA D  +L+       E      +
Sbjct: 11  KEELGKGAFSVVRRCVHKTTGLEFAAKII--NTKKLSARDFQKLE------REARICRKL 62
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           +H NIV+L+        + LV++ +  G L++ +     + +    H I   + + +AY 
Sbjct: 63  QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQ-QILESIAYC 121
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVL---QARGGKDSTTTVIAGTY 703
           H    + I+HR++K  N+LL    +    K+ADFG+A  +   +A  G        AGT 
Sbjct: 122 HS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHG-------FAGTP 171
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           GYL+PE       +   D+++ GV+L  L+ G  P  D+
Sbjct: 172 GYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE 210

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 12  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 68
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 69  --EAYVMASVDNPHVCRLLGICLTSTVQ---LIMQLMPFGCLLDYVREHKDNIGSQYLLN 123
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 124 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 174
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 175 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With 4-(4- Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One Length = 328

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 45  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 100
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 101 VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 158
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 159 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 210
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 211 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 269
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 270 ----------------------FRQRVSXECQHLIRWCLALRPSDRPTFEEI 299

>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain Length = 313

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 30  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 85
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 86  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 143
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 144 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 195
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 196 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 254
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 255 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 284

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 144/337 (42%), Gaps = 70/337 (20%)
Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQ 572
           D+ E+  E +T   ++GQG  G VY+    D+  GE    VAVK +       SAS  ++
Sbjct: 7   DEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRER 61
Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD- 631
           ++       E   +      ++V+L    S     L+V E M +G+L   L       + 
Sbjct: 62  IEF----LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAEN 117
Query: 632 -----WPTRH---KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
                 PT     ++A  +A G+AYL+       +HRD+ + N ++  ++  K+ DFG+ 
Sbjct: 118 NPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMT 174
Query: 684 KVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRK 737
           + +       +GGK            ++APE       TT  D++SFGVVL E+ +   +
Sbjct: 175 RDIXETDXXRKGGKGLLPV------RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQ 228
Query: 738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDE-------MIQVLRIAIRCT 790
           P +     N+ ++ +V                 + G + D+       +  ++R+   C 
Sbjct: 229 PYQG--LSNEQVLKFV-----------------MDGGYLDQPDNCPERVTDLMRM---CW 266
Query: 791 SKSPATRPTMNEVVQLLAEA-DPCRFESCKFPNKSNK 826
             +P  RPT  E+V LL +   P   E   F ++ NK
Sbjct: 267 QFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK 303

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 85
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 86  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 145
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 146 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 199 Y----KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 250
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 251 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 298
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 299 SELVEHLG 306

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 16/210 (7%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  + + + E +   K+ ++   +  ++T         + E + L N   + 
Sbjct: 82  IGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAET------ACFREERDVLVNGDCQW 135
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           I  L+  F       LV +Y   G+L   L K     D        F + + +  +    
Sbjct: 136 ITALHYAFQDENHLYLVMDYYVGGDLLTLLSK---FEDKLPEDMARFYIGEMVLAIDSIH 192
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
               +HRDIK  N+LLDVN   ++ADFG    +   G   S+  V  GT  Y++PE   +
Sbjct: 193 QLHYVHRDIKPDNVLLDVNGHIRLADFGSCLKMNDDGTVQSSVAV--GTPDYISPEILQA 250
Query: 714 -----SKATTKCDVYSFGVVLMELITGRKP 738
                 K   +CD +S GV + E++ G  P
Sbjct: 251 MEDGMGKYGPECDWWSLGVCMYEMLYGETP 280

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E + + N+ H+ +V+LY   +      ++ EYM NG L + L +           ++   
Sbjct: 69  EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKD 128
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V + + YL        +HRD+ + N L++     KV+DFG+++ +      D  T+ +  
Sbjct: 129 VCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL----DDEYTSSVGS 181
Query: 702 TY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
            +   +  PE    SK ++K D+++FGV++ E+ + G+ P E
Sbjct: 182 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE 223

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 42/224 (18%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  GTVYK + +  GE V +     +  + ++   ++  LD     E   + ++ + 
Sbjct: 33  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD-----EAYVMASVDNP 87
Query: 593 NIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWPTRHKIAFGVAQ 644
           ++ +L   C  S++    L+ + MP G L D +  HK  +     L+W         +A+
Sbjct: 88  HVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLNW------CVQIAK 138
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------QARGGKDSTTT 697
           G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L        A GGK     
Sbjct: 139 GMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK- 194
Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
                  ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 195 -------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 231

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E + + N+ H+ +V+LY   +      ++ EYM NG L + L +           ++   
Sbjct: 49  EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKD 108
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V + + YL        +HRD+ + N L++     KV+DFG+++ +      D  T+ +  
Sbjct: 109 VCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL----DDEYTSSVGS 161
Query: 702 TY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
            +   +  PE    SK ++K D+++FGV++ E+ + G+ P E
Sbjct: 162 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE 203

>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Pyrrolo[2,3- A]carbazole Ligand Length = 313

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 31  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 86
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 87  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 144
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 145 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 196
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D          
Sbjct: 197 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---------- 246
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                       E++  ++   FR  +    +  IR C +  P+ RPT  E+
Sbjct: 247 -----------EEIIGGQV--FFRQRVSSECQHLIRWCLALRPSDRPTFEEI 285

>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With Ly333531 Length = 312

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 30  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 85
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 86  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 143
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 144 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 195
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D          
Sbjct: 196 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---------- 245
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                       E++  ++   FR  +    +  IR C +  P+ RPT  E+
Sbjct: 246 -----------EEIIGGQV--FFRQRVSSECQHLIRWCLALRPSDRPTFEEI 284

>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small Molecule Inhibitor Length = 298

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 3   EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 58
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 59  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 116
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 117 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 168
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 169 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 227
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 228 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 257

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G V  + + + E +   K+ ++   +  ++T         + E + L N   + 
Sbjct: 98  IGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAET------ACFREERDVLVNGDCQW 151
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL-DWPTRHKIAFGV--AQGLAYLH 650
           I  L+  F       LV +Y   G+L   L K    L +   R  I   V     +  LH
Sbjct: 152 ITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSIHQLH 211
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
           +      +HRDIK  N+LLDVN   ++ADFG    +   G   S+  V  GT  Y++PE 
Sbjct: 212 Y------VHRDIKPDNVLLDVNGHIRLADFGSCLKMNDDGTVQSSVAV--GTPDYISPEI 263
Query: 711 AYS-----SKATTKCDVYSFGVVLMELITGRKP 738
             +      K   +CD +S GV + E++ G  P
Sbjct: 264 LQAMEDGMGKYGPECDWWSLGVCMYEMLYGETP 296

>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Beta Carboline Ligand I Length = 314

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 31  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 86
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 87  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 144
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 145 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 196
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D          
Sbjct: 197 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---------- 246
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                       E++  ++   FR  +    +  IR C +  P+ RPT  E+
Sbjct: 247 -----------EEIIGGQV--FFRQRVSSECQHLIRWCLALRPSDRPTFEEI 285

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 17  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 73
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 74  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 128
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 129 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 179
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 180 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 228

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 566 SASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH 624
           S S  +  +L +    EV+ L  +  H NI++L   + +     LV++ M  G L+D L 
Sbjct: 57  SFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT 116
Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK 684
           + +   +  TR KI   + + +  LH      I+HRD+K  NILLD +   K+ DFG + 
Sbjct: 117 EKVTLSEKETR-KIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSC 172
Query: 685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT------KCDVYSFGVVLMELITGRKP 738
            L   G K  +   + GT  YLAPE    S          + D++S GV++  L+ G  P
Sbjct: 173 QLDP-GEKLRS---VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 228

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 4   RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 60
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 61  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 115
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 116 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 166
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 167 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 215

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E + + N+ H+ +V+LY   +      ++ EYM NG L + L +           ++   
Sbjct: 53  EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKD 112
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V + + YL        +HRD+ + N L++     KV+DFG+++ +      D  T+ +  
Sbjct: 113 VCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL----DDEYTSSVGS 165
Query: 702 TY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
            +   +  PE    SK ++K D+++FGV++ E+ + G+ P E
Sbjct: 166 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE 207

>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Naphtho-Difuran Ligand Length = 313

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 31  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 86
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 87  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 144
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 145 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 196
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D          
Sbjct: 197 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---------- 246
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                       E++  ++   FR  +    +  IR C +  P+ RPT  E+
Sbjct: 247 -----------EEIIGGQV--FFRQRVSXECQHLIRWCLALRPSDRPTFEEI 285

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 10  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 66
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 67  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 121
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 122 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 172
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 173 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its Consensus Peptide Pimtide Length = 313

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 30  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 85
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 86  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 143
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 144 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 195
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D          
Sbjct: 196 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---------- 245
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                       E++  ++   FR  +    +  IR C +  P+ RPT  E+
Sbjct: 246 -----------EEIIGGQV--FFRQRVSSECQHLIRWCLALRPSDRPTFEEI 284

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 13  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 69
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 70  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 124
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 125 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 175
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 176 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 224

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 16  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 72
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 73  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 127
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 128 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 178
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 179 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 227

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 72  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 122
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 123 HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 182
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 183 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 235
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 236 Y----KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 287
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 288 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 335
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 336 SELVEHLG 343

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 566 SASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH 624
           S S  +  +L +    EV+ L  +  H NI++L   + +     LV++ M  G L+D L 
Sbjct: 44  SFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT 103
Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK 684
           + +   +  TR KI   + + +  LH      I+HRD+K  NILLD +   K+ DFG + 
Sbjct: 104 EKVTLSEKETR-KIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSC 159
Query: 685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT------KCDVYSFGVVLMELITGRKP 738
            L   G K      + GT  YLAPE    S          + D++S GV++  L+ G  P
Sbjct: 160 QLDP-GEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 215

>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 45  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 100
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 101 VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 158
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 159 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 210
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 211 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 269
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 270 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 299

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 31/216 (14%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G    + D  S E+VAVK  + +R +         ++D+ +K E+    ++RH 
Sbjct: 27  IGSGNFGVARLMRDKQSNELVAVK--YIERGE---------KIDENVKREIINHRSLRHP 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQ---GLAY 648
           NIV+      +     +V EY   G L++ + + G    D     +  F   Q   G++Y
Sbjct: 76  NIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSED-----EARFFFQQLISGVSY 130
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            H      + HRD+K  N LLD +  P  K+  FG +K         ST     GT  Y+
Sbjct: 131 CH---AMQVCHRDLKLENTLLDGSPAPRLKICAFGYSKSSVLHSQPKSTV----GTPAYI 183
Query: 707 APEYAYSSKATTK-CDVYSFGVVLMELITGRKPVED 741
           APE     +   K  DV+S GV L  ++ G  P ED
Sbjct: 184 APEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 219

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 12  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 68
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 69  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 123
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 124 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 174
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 175 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 26  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 76
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 77  HIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 136
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 137 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 190 Y----KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 241
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 242 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 289
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 290 SELVEHLG 297

>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546 Length = 308

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 25  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 80
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 81  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 138
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 139 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 190
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 191 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 249
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 250 ----------------------FRQRVSXECQHLIRWCLALRPSDRPTFEEI 279

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 13  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 69
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 70  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 124
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 125 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 175
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 176 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 224

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 120 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKAQTHGKW 176
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 177 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 214

>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And The Jnk Inhibitor V Length = 314

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 31  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 86
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 87  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 144
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 145 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 196
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D          
Sbjct: 197 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---------- 246
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                       E++  ++   FR  +    +  IR C +  P+ RPT  E+
Sbjct: 247 -----------EEIIGGQV--FFRQRVSXECQHLIRWCLALRPSDRPTFEEI 285

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 16/182 (8%)
Query: 564 KVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL 623
           K+SA D  +L+       E      ++H NIV+L+   S    + L+++ +  G L++  
Sbjct: 48  KLSARDHQKLE------REARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFE-- 99
Query: 624 HKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP---KVADF 680
              +V  ++ +    +  + Q L  + H     ++HR++K  N+LL    +    K+ADF
Sbjct: 100 --DIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADF 157
Query: 681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           G+A  ++   G+       AGT GYL+PE           D+++ GV+L  L+ G  P  
Sbjct: 158 GLAIEVE---GEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFW 214
Query: 741 DD 742
           D+
Sbjct: 215 DE 216

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 69/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 26  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 76
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 77  HIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 136
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 137 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 190 Y----KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 241
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 242 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 289
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 290 SELVEHLG 297

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 10  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 66
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 67  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 121
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 122 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 172
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 173 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E + + N+ H+ +V+LY   +      ++ EYM NG L + L +           ++   
Sbjct: 54  EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKD 113
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V + + YL        +HRD+ + N L++     KV+DFG+++ +      D  T+ +  
Sbjct: 114 VCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL----DDEYTSSVGS 166
Query: 702 TY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
            +   +  PE    SK ++K D+++FGV++ E+ + G+ P E
Sbjct: 167 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE 208

>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of P27kip1 Carboxy-Terminal Peptide Length = 320

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 37  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 92
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 93  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 150
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 151 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 202
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 203 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 261
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 262 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 291

>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With Inhibitor Length = 333

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 50  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 105
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 106 VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 163
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 164 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 215
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 216 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 274
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 275 ----------------------FRQRVSXECQHLIRWCLALRPSDRPTFEEI 304

>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target Of Aberrant Somatic Hypermutations In Diffuse Large Cell Lymphoma Length = 293

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 2   EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 57
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 58  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 115
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 116 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 167
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 168 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 226
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 227 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 256

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 13  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 69
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 70  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 124
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 125 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 175
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 176 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 224

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 20/216 (9%)
Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K ++G+G    V + +   +G   A K +     K+SA D  +L+       E      +
Sbjct: 11  KEELGKGAFSVVRRCVHKTTGLEFAAKII--NTKKLSARDFQKLE------REARICRKL 62
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           +H NIV+L+        + LV++ +  G L++ +     + +    H I   + + +AY 
Sbjct: 63  QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQ-QILESIAYC 121
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           H    + I+HR++K  N+LL    +    K+ADFG+A  +             AGT GYL
Sbjct: 122 HS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV----NDSEAWHGFAGTPGYL 174
Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           +PE       +   D+++ GV+L  L+ G  P  D+
Sbjct: 175 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE 210

>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution Length = 300

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 17  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 72
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 73  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 130
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 131 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 182
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 183 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 241
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 242 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 271

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 30/256 (11%)
Query: 500 ETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKL 558
           E +   + P  V+      +D  +ILE +      G G  G V++ ++  +G V   K +
Sbjct: 31  EDIWKKYVPQPVEVKQGSVYDYYDILEEL------GSGAFGVVHRCVEKATGRVFVAKFI 84
Query: 559 WSQRTKVSASDTDQLQLDK-GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG 617
                           LDK  +K E+  +  + H  ++ L+  F   Y  +L+ E++  G
Sbjct: 85  -----------NTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGG 133
Query: 618 NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-- 675
            L+D +      +             +GL ++H      I+H DIK  NI+ +       
Sbjct: 134 ELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSV 190
Query: 676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITG 735
           K+ DFG+A  L      D    V   T  + APE           D+++ GV+   L++G
Sbjct: 191 KIIDFGLATKLNP----DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 246
Query: 736 RKPV--EDDFGDNKNI 749
             P   EDD    +N+
Sbjct: 247 LSPFAGEDDLETLQNV 262

>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As Potent, Highly Selective And Orally Bioavailable Pim Kinases Inhibitors Length = 294

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 3   EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 58
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 59  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 116
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 117 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 168
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 169 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 227
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 228 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 257

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 70  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 120
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 121 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 177
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPV-KWMAPEALFDRVY 236
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 237 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 281
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 282 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 313

>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As Potent Pim-1 Inhibitors Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 3   EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 58
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 59  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 116
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 117 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 168
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 169 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 227
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 228 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 257

>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 18  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 73
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 74  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 131
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 132 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 183
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 184 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 242
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 243 ----------------------FRQRVSXECQHLIRWCLALRPSDRPTFEEI 272

>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261 Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 30  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 85
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 86  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 143
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 144 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 195
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D          
Sbjct: 196 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---------- 245
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                       E++  ++   FR  +    +  IR C +  P+ RPT  E+
Sbjct: 246 -----------EEIIGGQV--FFRQRVSXECQHLIRWCLALRPSDRPTFEEI 284

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 142/334 (42%), Gaps = 64/334 (19%)
Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQ 572
           D+ E+  E +T   ++GQG  G VY+    D+  GE    VAVK +       SAS  ++
Sbjct: 10  DEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRER 64
Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD- 631
           ++       E   +      ++V+L    S     L+V E M +G+L   L       + 
Sbjct: 65  IEF----LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAEN 120
Query: 632 -----WPTRH---KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
                 PT     ++A  +A G+AYL+       +HRD+ + N ++  ++  K+ DFG+ 
Sbjct: 121 NPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMT 177
Query: 684 KVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRK 737
           + +       +GGK            ++APE       TT  D++SFGVVL E+ +   +
Sbjct: 178 RDIXETDXXRKGGKGLLPV------RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQ 231
Query: 738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMI----QVLRIAIRCTSKS 793
           P +     N+ ++ +V                 + G + D+      +V  +   C   +
Sbjct: 232 PYQG--LSNEQVLKFV-----------------MDGGYLDQPDNCPERVTDLMRMCWQFN 272
Query: 794 PATRPTMNEVVQLLAEA-DPCRFESCKFPNKSNK 826
           P  RPT  E+V LL +   P   E   F ++ NK
Sbjct: 273 PNMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK 306

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 142/334 (42%), Gaps = 64/334 (19%)
Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQ 572
           D+ E+  E +T   ++GQG  G VY+    D+  GE    VAVK +       SAS  ++
Sbjct: 10  DEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRER 64
Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD- 631
           ++       E   +      ++V+L    S     L+V E M +G+L   L       + 
Sbjct: 65  IEF----LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAEN 120
Query: 632 -----WPTRH---KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
                 PT     ++A  +A G+AYL+       +HRD+ + N ++  ++  K+ DFG+ 
Sbjct: 121 NPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMT 177
Query: 684 KVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRK 737
           + +       +GGK            ++APE       TT  D++SFGVVL E+ +   +
Sbjct: 178 RDIYETDYYRKGGKGLLPV------RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQ 231
Query: 738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMI----QVLRIAIRCTSKS 793
           P +     N+ ++ +V                 + G + D+      +V  +   C   +
Sbjct: 232 PYQG--LSNEQVLKFV-----------------MDGGYLDQPDNCPERVTDLMRMCWQFN 272
Query: 794 PATRPTMNEVVQLLAEA-DPCRFESCKFPNKSNK 826
           P  RPT  E+V LL +   P   E   F ++ NK
Sbjct: 273 PKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK 306

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 35  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 91
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 92  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 146
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG+AK+L     
Sbjct: 147 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 197
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 198 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 246

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 26/219 (11%)
Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K ++G+G    V + +   +G   A K +     K+SA D  +L+       E      +
Sbjct: 10  KEELGKGAFSVVRRCVHKTTGLEFAAKII--NTKKLSARDFQKLE------REARICRKL 61
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           +H NIV+L+        + LV++ +  G L++ +     + +    H I   + + +AY 
Sbjct: 62  QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQ-QILESIAYC 120
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVL---QARGGKDSTTTVIAGTY 703
           H    + I+HR++K  N+LL    +    K+ADFG+A  +   +A  G        AGT 
Sbjct: 121 HS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHG-------FAGTP 170
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           GYL+PE       +   D+++ GV+L  L+ G  P  D+
Sbjct: 171 GYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE 209

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 141/338 (41%), Gaps = 72/338 (21%)
Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQ 572
           D+ E+  E +T   ++GQG  G VY+    D+  GE    VAVK +       SAS  ++
Sbjct: 10  DEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRER 64
Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD- 631
           ++       E   +      ++V+L    S     L+V E M +G+L   L       + 
Sbjct: 65  IEF----LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAEN 120
Query: 632 -----WPTRH---KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
                 PT     ++A  +A G+AYL+       +HRD+ + N ++  ++  K+ DFG+ 
Sbjct: 121 NPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMT 177
Query: 684 K-----VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           +         +GGK            ++APE       TT  D++SFGVVL E+      
Sbjct: 178 RDIYETAYYRKGGKGLLPV------RWMAPESLKDGVFTTSSDMWSFGVVLWEI------ 225
Query: 739 VEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFRDE-------MIQVLRIAIRC 789
                          S+     +G+   +VL   + G + D+       +  ++R+   C
Sbjct: 226 --------------TSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRM---C 268
Query: 790 TSKSPATRPTMNEVVQLLAEA-DPCRFESCKFPNKSNK 826
              +P  RPT  E+V LL +   P   E   F ++ NK
Sbjct: 269 WQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK 306

>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 18  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 73
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 74  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 131
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 132 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 183
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 184 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 242
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 243 ----------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 272

>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa Length = 300

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 17  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 72
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 73  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 130
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 131 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 182
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 183 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 241
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P+ RPT  E+
Sbjct: 242 ----------------------FRQRVSXECQHLIRWCLALRPSDRPTFEEI 271

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 130/308 (42%), Gaps = 70/308 (22%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 36  LGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEH----RALMSELKILI 86
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     D L+K  +
Sbjct: 87  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTPED-LYKDFL 145
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 146 TLE----HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 199 X----KDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 250
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 251 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 298
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 299 SELVEHLG 306

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 566 SASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH 624
           S S  +  +L +    EV+ L  +  H NI++L   + +     LV++ M  G L+D L 
Sbjct: 57  SFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT 116
Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK 684
           + +   +  TR KI   + + +  LH      I+HRD+K  NILLD +   K+ DFG + 
Sbjct: 117 EKVTLSEKETR-KIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSC 172
Query: 685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT------KCDVYSFGVVLMELITGRKP 738
            L   G K      + GT  YLAPE    S          + D++S GV++  L+ G  P
Sbjct: 173 QLDP-GEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 228

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E + + N+ H+ +V+LY   +      ++ EYM NG L + L +           ++   
Sbjct: 60  EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKD 119
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V + + YL        +HRD+ + N L++     KV+DFG+++ +      D  T+ +  
Sbjct: 120 VCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL----DDEYTSSVGS 172
Query: 702 TY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
            +   +  PE    SK ++K D+++FGV++ E+ + G+ P E
Sbjct: 173 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE 214

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 33/226 (14%)
Query: 529 TEKNKV---GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           TE  KV   G G  GTVYK I +  GE V +        KV   +T   + +K +  E  
Sbjct: 17  TELRKVKVLGSGAFGTVYKGIWIPDGENVKI----PVAIKVLRENTSP-KANKEILDEAY 71
Query: 585 TLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
            +  +    + +L   C  S++    LV + MP G L D + +    L           +
Sbjct: 72  VMAGVGSPYVSRLLGICLTSTVQ---LVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQI 128
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------QARGGKDST 695
           A+G++YL    L   +HRD+ + N+L+      K+ DFG+A++L        A GGK   
Sbjct: 129 AKGMSYLEDVRL---VHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPI 185
Query: 696 TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
                    ++A E     + T + DV+S+GV + EL+T G KP +
Sbjct: 186 K--------WMALESILRRRFTHQSDVWSYGVTVWELMTFGAKPYD 223

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 101/218 (46%), Gaps = 35/218 (16%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G    + D  S E+VAVK  + +R +         ++D+ +K E+    ++RH 
Sbjct: 27  IGSGNFGVARLMRDKQSNELVAVK--YIERGE---------KIDENVKREIINHRSLRHP 75
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQ---GLAY 648
           NIV+      +     +V EY   G L++ + + G    D     +  F   Q   G++Y
Sbjct: 76  NIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSED-----EARFFFQQLISGVSY 130
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAK--VLQARGGKDSTTTVIAGTYG 704
            H      + HRD+K  N LLD +  P  K+  FG +K  VL ++  KD+      GT  
Sbjct: 131 CH---AMQVCHRDLKLENTLLDGSPAPRLKICAFGYSKSSVLHSQP-KDTV-----GTPA 181
Query: 705 YLAPEYAYSSKATTK-CDVYSFGVVLMELITGRKPVED 741
           Y+APE     +   K  DV+S GV L  ++ G  P ED
Sbjct: 182 YIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 219

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+  FG
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILGFG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 104 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 159
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 160 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 210
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 211 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 248

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 582 EVETLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           EVE L   + H+N+++L  +F       LV+E M  G++   +HK   H +      +  
Sbjct: 60  EVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHK-RRHFNELEASVVVQ 118
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTT 697
            VA  L +LH+     I HRD+K  NIL +   Q    K+ DFG+   ++  G     +T
Sbjct: 119 DVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFGLGSGIKLNGDCSPIST 175
Query: 698 ----VIAGTYGYLAPEY--AYSSKAT---TKCDVYSFGVVLMELITGRKP 738
                  G+  Y+APE   A+S +A+    +CD++S GV+L  L++G  P
Sbjct: 176 PELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPP 225

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+  G ++  L + +     P     A  +     YLH   
Sbjct: 103 LVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 159
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE   S
Sbjct: 160 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLXGTPEYLAPEIILS 212
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 114 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 170
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 171 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 208

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 116 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 172
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 173 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 210

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V+ G+ YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T    
Sbjct: 120 VSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 176
Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
              + APE     K ++K DV+SFGV++ E  + G+KP
Sbjct: 177 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP 214

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 25/216 (11%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVK--KLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           ++G G  GTVYK  D +SG  VA+K  ++ +    +  S   ++ L + L+         
Sbjct: 11  EIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEA-------F 63
Query: 590 RHKNIVKLY--CYFSSLYCNL---LVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVA 643
            H N+V+L   C  S     +   LV+E++ + +L   L K     L   T   +     
Sbjct: 64  EHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQFL 122
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           +GL +LH      I+HRD+K  NIL+      K+ADFG+A++   +         +  T 
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQ----MALAPVVVTL 175
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
            Y APE    S   T  D++S G +  E+   RKP+
Sbjct: 176 WYRAPEVLLQSTYATPVDMWSVGCIFAEMFR-RKPL 210

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+  G ++  L + +     P     A  +     YLH   
Sbjct: 103 LVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 159
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE   S
Sbjct: 160 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILS 212
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik) Length = 371

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 31/230 (13%)
Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           + ++ RE +   T + ++G+G  G V+++ D  +G   AVKK+     ++     ++L  
Sbjct: 84  VDYEYREEVHWATHQLRLGRGSFGEVHRMEDKQTGFQCAVKKV-----RLEVFRAEELMA 138
Query: 576 DKGLKTE--VETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDW 632
             GL +   V   G +R    V ++             E +  G+L   +  +G +  D 
Sbjct: 139 CAGLTSPRIVPLYGAVREGPWVNIF------------MELLEGGSLGQLVKEQGCLPED- 185
Query: 633 PTRHKIAFGVA-QGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARG 690
             R     G A +GL YLH      I+H D+K+ N+LL  +     + DFG A  LQ  G
Sbjct: 186 --RALYYLGQALEGLEYLHS---RRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQPDG 240
Query: 691 GKDS--TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
              S  T   I GT  ++APE         K DV+S   +++ ++ G  P
Sbjct: 241 LGKSLLTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNGCHP 290

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 119/277 (42%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 70  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 120
Query: 612 EYMPNGNLWDALHK----GLV-----------HLDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+             + +       + +A+G+ YL       
Sbjct: 121 EYASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 177
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPV-KWMAPEALFDRVY 236
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 237 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 281
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 282 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 313

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ D G
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDAG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 90  LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 145
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 146 S---LDLIYRDLKPENLLIDEQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 196
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 197 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 234

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 140/330 (42%), Gaps = 69/330 (20%)
Query: 526 EAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGL 579
           E +T   ++GQG  G VY+    D+  GE    VAVK +       SAS  ++++     
Sbjct: 16  EKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRERIEF---- 66
Query: 580 KTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD------WP 633
             E   +      ++V+L    S     L+V E M +G+L   L       +       P
Sbjct: 67  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 126
Query: 634 TRH---KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA-- 688
           T     ++A  +A G+AYL+       +HRD+ + N ++  ++  K+ DFG+ + +    
Sbjct: 127 TLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETD 183
Query: 689 ---RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
              +GGK            ++APE       TT  D++SFGVVL E+ +   +P +    
Sbjct: 184 YYRKGGKGLLPVR------WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQG--L 235
Query: 745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDE-------MIQVLRIAIRCTSKSPATR 797
            N+ ++ +V                 + G + D+       +  ++R+   C   +P  R
Sbjct: 236 SNEQVLKFV-----------------MDGGYLDQPDNCPERVTDLMRM---CWQFNPKMR 275
Query: 798 PTMNEVVQLLAEA-DPCRFESCKFPNKSNK 826
           PT  E+V LL +   P   E   F ++ NK
Sbjct: 276 PTFLEIVNLLKDDLHPSFPEVSFFHSEENK 305

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 98  LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLH 153
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 154 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 204
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 205 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 242

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ D G
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDRG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+  G ++  L + +     P     A  +     YLH   
Sbjct: 124 LVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLHS-- 180
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE   S
Sbjct: 181 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILS 233
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 234 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 268

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 71/308 (23%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 37  LGRGAFGQVIEADAFGIDKTATXRTVAVKML-----KEGATHSEH----RALMSELKILI 87
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P     + L+K  +
Sbjct: 88  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKP--EDLYKDFL 145
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 146 TLE----HLIXYSFQVAKGMEFLAS---RKXIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 199 X----KDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 250
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 251 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 298
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 299 SELVEHLG 306

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+  G ++  L + +     P     A  +     YLH   
Sbjct: 103 LVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 159
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE   S
Sbjct: 160 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEIILS 212
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPPF---FADEPIQIY 247

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 150/344 (43%), Gaps = 63/344 (18%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 18  DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 71
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNL---WDALHKGLV 628
           +++       E   +      ++V+L    S     L++ E M  G+L     +L   + 
Sbjct: 72  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMA 127
Query: 629 H---LDWPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
           +   L  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 128 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 184
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 185 TRDIYETDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 238
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG +  LDK    +  D + +++R+   C   +P  
Sbjct: 239 QPYQG--LSNEQVLRFV------MEGGL--LDK--PDNCPDMLFELMRM---CWQYNPKM 283
Query: 797 RPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL 840
           RP+  E++  + E     F    F        S   K+  P EL
Sbjct: 284 RPSFLEIISSIKEEMEPGFREVSF------YYSEENKLPEPEEL 321

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H NIVKL+  F       LV E +  G L++ + K   H        I   +   ++++H
Sbjct: 65  HPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKK-KHFSETEASYIMRKLVSAVSHMH 123
Query: 651 HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
                 ++HRD+K  N+L    + N + K+ DFG A++   +   +        T  Y A
Sbjct: 124 D---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARL---KPPDNQPLKTPCFTLHYAA 177
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           PE    +     CD++S GV+L  +++G+ P +
Sbjct: 178 PELLNQNGYDESCDLWSLGVILYTMLSGQVPFQ 210

>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 46/292 (15%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 18  EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 73
Query: 579 LKTEVETLGNIR--HKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 74  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE--L 131
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 132 ARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 183
Query: 694 STTTVIAGTYGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D    +  ++ 
Sbjct: 184 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF- 242
Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                                 FR  +    +  IR C +  P  RPT  E+
Sbjct: 243 ----------------------FRQRVSXECQHLIRWCLALRPXDRPTFEEI 272

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 73/308 (23%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATXRTVAVKML-----KEGATHSEH----RALMSELKILI 85
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P    +  L+K  +
Sbjct: 86  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVP----YKDLYKDFL 141
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 142 TLE----HLICYSFQVAKGMEFLAS---RKXIHRDLAARNILLSEKNVVKICDFGLARDI 194
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 195 Y----KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 246
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 247 ---------YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 294
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 295 SELVEHLG 302

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFXEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 31/216 (14%)
Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G    + D  + E+VAVK  + +R            +D+ ++ E+    ++RH 
Sbjct: 28  IGSGNFGVARLMRDKLTKELVAVK--YIERGAA---------IDENVQREIINHRSLRHP 76
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQ---GLAY 648
           NIV+      +     ++ EY   G L++ + + G    D     +  F   Q   G++Y
Sbjct: 77  NIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRFSED-----EARFFFQQLLSGVSY 131
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            H      I HRD+K  N LLD +  P  K+ DFG +K         ST     GT  Y+
Sbjct: 132 CHS---MQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTV----GTPAYI 184
Query: 707 APEYAYSSKATTK-CDVYSFGVVLMELITGRKPVED 741
           APE     +   K  DV+S GV L  ++ G  P ED
Sbjct: 185 APEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFED 220

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 24/214 (11%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G VY      GE +   +   Q    S S   ++Q  +    E   +  + H N
Sbjct: 29  IGKGHFGVVYH-----GEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPN 83
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHK-----IAFG--VAQG 645
           ++       +L   +L  E +P+  L    H  L+  +  P R+      I+FG  VA+G
Sbjct: 84  VL-------ALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARG 136
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG-TYG 704
           + YL        +HRD+ + N +LD ++  KVADFG+A+ +  R          A     
Sbjct: 137 MEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVK 193
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           + A E   + + TTK DV+SFGV+L EL+T   P
Sbjct: 194 WTALESLQTYRFTTKSDVWSFGVLLWELLTRGAP 227

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 73/308 (23%)
Query: 534 VGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G+G  G V + D        +   VAVK L     K  A+ ++     + L +E++ L 
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATXRTVAVKML-----KEGATHSEH----RALMSELKILI 85
Query: 588 NIRHK-NIVKL----------------YCYFSSL--YCNLLVYEYMPNGNLWDALHKGLV 628
           +I H  N+V L                +C F +L  Y      E++P    +  L+K  +
Sbjct: 86  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVP----YKDLYKDFL 141
Query: 629 HLDWPTRHKI--AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
            L+    H I  +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +
Sbjct: 142 TLE----HLIXYSFQVAKGMEFLAS---RKXIHRDLAARNILLSEKNVVKIXDFGLARDI 194
Query: 687 QARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                KD              ++APE  +    T + DV+SFGV+L E+ + G  P    
Sbjct: 195 Y----KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---- 246
Query: 743 FGDNKNIIYWVSIKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
                    +  +K+D +    + E    +       EM Q +   + C    P+ RPT 
Sbjct: 247 ---------YPGVKIDEEFXRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTF 294
Query: 801 NEVVQLLA 808
           +E+V+ L 
Sbjct: 295 SELVEHLG 302

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 70  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 120
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 121 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 177
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +       +TT        ++APE  +    
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKNTTNGRLPV-KWMAPEALFDRVY 236
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 237 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 281
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 282 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 313

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 12  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 68
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 69  --EAYVMASVDNPHVCRLLGICLTSTVQ---LIMQLMPFGCLLDYVREHKDNIGSQYLLN 123
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG AK+L     
Sbjct: 124 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEK 174
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 175 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 513 SFHRISFDQR--EILEAMTEKNKVGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R   ++   E+ E     + VG G  G+V    D  +G  VAVKKL      +  + 
Sbjct: 7   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA- 65
Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-----YCNLLVYEYMPNGNLWDALH 624
                  K    E+  L +++H+N++ L   F+       + ++ +  ++   +L     
Sbjct: 66  -------KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL----- 113
Query: 625 KGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
             +V     T   + F + Q   GL Y+H    + IIHRD+K +N+ ++ + + K+ D G
Sbjct: 114 NNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDGG 170
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGR 736
           +     AR   D  T  +A T  Y APE   +     +  D++S G ++ EL+TGR
Sbjct: 171 L-----ARHTDDEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 12  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 68
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 69  --EAYVMASVDNPHVCRLLGICLTSTVQ---LIMQLMPFGCLLDYVREHKDNIGSQYLLN 123
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG AK+L     
Sbjct: 124 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEK 174
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 175 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 14  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 70
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 71  --EAYVMASVDNPHVCRLLGICLTSTVQ---LIMQLMPFGCLLDYVREHKDNIGSQYLLN 125
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG AK+L     
Sbjct: 126 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEK 176
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 177 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 225

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFAEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 24/219 (10%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNL-WDALHKGLVHLDWPTRHKIAF 640
           E + L  +  + +V L   + +     LV   M  G+L +   H G     +P    + +
Sbjct: 234 EKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMG--QAGFPEARAVFY 291
Query: 641 G--VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
              +  GL  LH      I++RD+K  NILLD +   +++D G+A  +     +  T   
Sbjct: 292 AAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVP----EGQTIKG 344
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT GY+APE   + + T   D ++ G +L E+I G+ P    F   K  I    ++  
Sbjct: 345 RVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSP----FQQRKKKIKREEVERL 400
Query: 759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR 797
            KE + E   ++ S   R    Q+L        K PA R
Sbjct: 401 VKE-VPEEYSERFSPQARSLCSQLL-------CKDPAER 431

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 143/324 (44%), Gaps = 57/324 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 3   DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 56
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +++       E   +      ++V+L    S     L++ E M  G+L   L      ++
Sbjct: 57  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEME 112
Query: 632 ------WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 113 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 169
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 170 TRDIXETDXXRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 223
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG   +LDK    +  D +++++R+   C   +P  
Sbjct: 224 QPYQG--LSNEQVLRFVM------EG--GLLDK--PDNCPDMLLELMRM---CWQYNPKM 268
Query: 797 RPTMNEVVQLLAEADPCRFESCKF 820
           RP+  E++  + E     F    F
Sbjct: 269 RPSFLEIISSIKEEMEPGFREVSF 292

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 62/304 (20%)
Query: 534 VGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G G  G V +      G+  AV K+  +  K +A   ++    + L +E++ + ++ +H
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEK----EALMSELKIMSHLGQH 109
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-----------GLVHLDWPTRHKIAF 640
           +NIV L    +     L++ EY   G+L + L +            + +    TR  + F
Sbjct: 110 ENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTLSTRDLLHF 169
Query: 641 G--VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
              VAQG+A+L        IHRD+ + N+LL   +  K+ DFG+A+ +      + +  +
Sbjct: 170 SSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIM-----NDSNYI 221
Query: 699 IAGT----YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
           + G       ++APE  +    T + DV+S+G++L E+                     S
Sbjct: 222 VKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIF--------------------S 261
Query: 755 IKVDTKEGIMEVLDKKLSGSFRD--EMIQ-------VLRIAIRCTSKSPATRPTMNEVVQ 805
           + ++   GI+  ++ K     +D  +M Q       +  I   C +  P  RPT  ++  
Sbjct: 262 LGLNPYPGIL--VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS 319
Query: 806 LLAE 809
            L E
Sbjct: 320 FLQE 323

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 25/216 (11%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVK--KLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           ++G G  GTVYK  D +SG  VA+K  ++ +    +  S   ++ L + L+         
Sbjct: 11  EIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEA-------F 63
Query: 590 RHKNIVKLY--CYFSSLYCNL---LVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVA 643
            H N+V+L   C  S     +   LV+E++ + +L   L K     L   T   +     
Sbjct: 64  EHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQFL 122
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           +GL +LH      I+HRD+K  NIL+      K+ADFG+A++   +         +  T 
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQ----MALFPVVVTL 175
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV 739
            Y APE    S   T  D++S G +  E+   RKP+
Sbjct: 176 WYRAPEVLLQSTYATPVDMWSVGCIFAEMFR-RKPL 210

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 150/335 (44%), Gaps = 58/335 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 11  DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 64
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +++       E   +      ++V+L    S     L++ E M  G+L   L      ++
Sbjct: 65  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEME 120
Query: 632 ------WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 121 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 177
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 178 TRDIYETDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 231
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG   +LDK    +  D + +++R+   C   +P  
Sbjct: 232 QPYQG--LSNEQVLRFV------MEG--GLLDK--PDNCPDMLFELMRM---CWQYNPKM 276
Query: 797 RPTMNEVV-QLLAEADPCRFESCKFPNKSNKESSN 830
           RP+  E++  +  E +P   E   + ++ NK  +N
Sbjct: 277 RPSFLEIISSIKEEMEPGFREVSFYYSEENKMENN 311

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 144/338 (42%), Gaps = 51/338 (15%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKV-SASDTDQLQLDK 577
           D+ E+  E +T   ++GQG  G VY+  +  G    VK     R  + + ++   ++   
Sbjct: 18  DEWEVAREKITMSRELGQGSFGMVYE-GVAKG---VVKDEPETRVAIKTVNEAASMRERI 73
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD------ 631
               E   +      ++V+L    S     L++ E M  G+L   L      ++      
Sbjct: 74  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 133
Query: 632 WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
            P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+ + +  
Sbjct: 134 PPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 190
Query: 689 -----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                +GGK            +++PE       TT  DV+SFGVVL E+ T   +P +  
Sbjct: 191 TDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG- 243
Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
              N+ ++ +V       EG +  LDK    +  D + +++R+   C   +P  RP+  E
Sbjct: 244 -LSNEQVLRFV------MEGGL--LDK--PDNCPDMLFELMRM---CWQYNPKMRPSFLE 289
Query: 803 VVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL 840
           ++  + E     F    F        S   K+  P EL
Sbjct: 290 IISSIKEEMEPGFREVSF------YYSEENKLPEPEEL 321

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 24/219 (10%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNL-WDALHKGLVHLDWPTRHKIAF 640
           E + L  +  + +V L   + +     LV   M  G+L +   H G     +P    + +
Sbjct: 234 EKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMG--QAGFPEARAVFY 291
Query: 641 G--VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
              +  GL  LH      I++RD+K  NILLD +   +++D G+A  +     +  T   
Sbjct: 292 AAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVP----EGQTIKG 344
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
             GT GY+APE   + + T   D ++ G +L E+I G+ P    F   K  I    ++  
Sbjct: 345 RVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSP----FQQRKKKIKREEVERL 400
Query: 759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR 797
            KE + E   ++ S   R    Q+L        K PA R
Sbjct: 401 VKE-VPEEYSERFSPQARSLCSQLL-------CKDPAER 431

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 70  VAVKMLKDDATEEDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 120
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 121 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 177
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 236
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 237 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 281
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 282 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 313

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 58/300 (19%)
Query: 534 VGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G G  G V +      G+  AV K+  +  K +A   ++    + L +E++ + ++ +H
Sbjct: 46  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEK----EALMSELKIMSHLGQH 101
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH-KGLVHLD------WPTRHKIAFG--V 642
           +NIV L    +     L++ EY   G+L + L  K    LD         R  + F   V
Sbjct: 102 ENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQV 161
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           AQG+A+L        IHRD+ + N+LL   +  K+ DFG+A+ +      + +  ++ G 
Sbjct: 162 AQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIM-----NDSNYIVKGN 213
Query: 703 ----YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
                 ++APE  +    T + DV+S+G++L E+                     S+ ++
Sbjct: 214 ARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIF--------------------SLGLN 253
Query: 759 TKEGIMEVLDKKLSGSFRD--EMIQ-------VLRIAIRCTSKSPATRPTMNEVVQLLAE 809
              GI+  ++ K     +D  +M Q       +  I   C +  P  RPT  ++   L E
Sbjct: 254 PYPGIL--VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQE 311

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 10  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 66
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 67  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 121
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG AK+L     
Sbjct: 122 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEK 172
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 173 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 59  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 109
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 110 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 166
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 167 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 225
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 226 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 270
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 271 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 302

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+++D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLIIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 IISKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 62/304 (20%)
Query: 534 VGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G G  G V +      G+  AV K+  +  K +A   ++    + L +E++ + ++ +H
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEK----EALMSELKIMSHLGQH 109
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-----------GLVHLDWPTRHKIAF 640
           +NIV L    +     L++ EY   G+L + L +            + +    TR  + F
Sbjct: 110 ENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHF 169
Query: 641 G--VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
              VAQG+A+L        IHRD+ + N+LL   +  K+ DFG+A+ +      + +  +
Sbjct: 170 SSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIM-----NDSNYI 221
Query: 699 IAGT----YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
           + G       ++APE  +    T + DV+S+G++L E+                     S
Sbjct: 222 VKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIF--------------------S 261
Query: 755 IKVDTKEGIMEVLDKKLSGSFRD--EMIQ-------VLRIAIRCTSKSPATRPTMNEVVQ 805
           + ++   GI+  ++ K     +D  +M Q       +  I   C +  P  RPT  ++  
Sbjct: 262 LGLNPYPGIL--VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS 319
Query: 806 LLAE 809
            L E
Sbjct: 320 FLQE 323

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 43/237 (18%)
Query: 522 REILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           R + E   +K KV G G  GTVYK + +  GE V +     +  + ++   ++  LD   
Sbjct: 17  RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD--- 73
Query: 580 KTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LD 631
             E   + ++ + ++ +L   C  S++    L+ + MP G L D +  HK  +     L+
Sbjct: 74  --EAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLN 128
Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL----- 686
           W  +      +A+G+ YL    L   +HRD+ + N+L+      K+ DFG AK+L     
Sbjct: 129 WCVQ------IAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEK 179
Query: 687 --QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
              A GGK            ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 180 EYHAEGGKVPIK--------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 228

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 116 VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 166
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 167 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 223
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 224 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 282
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 283 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 327
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 328 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 359

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 42/224 (18%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  GTVYK + +  GE V +     +  + ++   ++  LD     E   + ++ + 
Sbjct: 25  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD-----EAYVMASVDNP 79
Query: 593 NIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWPTRHKIAFGVAQ 644
           ++ +L   C  S++    L+ + MP G L D +  HK  +     L+W  +      +A+
Sbjct: 80  HVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQ------IAK 130
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------QARGGKDSTTT 697
           G+ YL    L   +HRD+ + N+L+      K+ DFG AK+L        A GGK     
Sbjct: 131 GMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIK- 186
Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
                  ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 187 -------WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 62  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 112
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 113 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 169
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 170 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 228
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 229 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 273
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 274 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 305

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 125/273 (45%), Gaps = 29/273 (10%)
Query: 10  LPDFSPMQNL---RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFR 66
           + D  P++NL    RL+LS+N  +    LS   LT+L+ LSF+ N    L   P +++  
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLK--PLANLTT 174
Query: 67  LTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYN 126
           L +L I       +     + +  +T+L  L  T N I+   P  +G+L NL +L L  N
Sbjct: 175 LERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 127 Q-QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
           Q +  GT    L +LT LTDLD++ N +S   P S   L KL  L+L  N +S    S +
Sbjct: 228 QLKDIGT----LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPL 279
Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
           A  T LT L L +N L    P  +     L  L L  N +S   P  V S  KLQ     
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 335
Query: 246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP 278
            N  S V   SLA   N+      +N +    P
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 104/236 (44%), Gaps = 45/236 (19%)
Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLE--LYYNQQLAGTIPEELGNLTELTDLDMSV 150
           +LT +  + N +T   P     LKNL +L   L  N Q+A   P  L NLT LT L +  
Sbjct: 64  NLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 151 NHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLG 210
           N ++   P  +  L  L  L+L +N++S +IS+ ++  T+L  LS   N +T   P  L 
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 211 QWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN 270
             + L  LD+S NK+S                              LA+  NL     +N
Sbjct: 171 NLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIATN 204
Query: 271 NHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP 326
           N +    P GIL+    ++ +LS N        T+ +  NL++L +  NQIS   P
Sbjct: 205 NQISDITPLGILT----NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 9/102 (8%)
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           +G+ YLH+     IIHRDIK +N+L+  +   K+ADFG++   +   G D+  +   GT 
Sbjct: 148 KGIEYLHY---QKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFK---GSDALLSNTVGTP 201
Query: 704 GYLAPEYAYSSK---ATTKCDVYSFGVVLMELITGRKPVEDD 742
            ++APE    ++   +    DV++ GV L   + G+ P  D+
Sbjct: 202 AFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 57  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 107
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 108 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 164
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 165 CIHRDLTARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 223
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 224 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 268
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 269 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 300

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 70  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIIHLLGACTQDGPLYVIV 120
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 121 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 177
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 236
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 237 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 281
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 282 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 313

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ ++  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYQMAAGYPPF---FADQPIQIY 247

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 42/221 (19%)
Query: 537 GGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIV 595
           G  GTVYK + +  GE V +     +  + ++   ++  LD     E   + ++ + ++ 
Sbjct: 33  GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD-----EAYVMASVDNPHVC 87
Query: 596 KLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWPTRHKIAFGVAQGLA 647
           +L   C  S++    L+ + MP G L D +  HK  +     L+W  +      +A+G+ 
Sbjct: 88  RLLGICLTSTVQ---LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQ------IAKGMN 138
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------QARGGKDSTTTVIA 700
           YL    L   +HRD+ + N+L+      K+ DFG+AK+L        A GGK        
Sbjct: 139 YLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK---- 191
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
               ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 192 ----WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 228

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 70  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIITLLGACTQDGPLYVIV 120
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 121 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 177
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 236
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 237 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 281
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 282 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 313

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 120/286 (41%), Gaps = 31/286 (10%)
Query: 522 REILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           +E+ E       +G+G  G V++    S +   + K       V    TDQ+ + K    
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKF------VKVKGTDQVLVKK---- 50
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E+  L   RH+NI+ L+  F S+   ++++E++   ++++ ++     L+          
Sbjct: 51  EISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQ 110
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVI 699
           V + L +LH      I H DI+  NI+         K+ +FG A+  Q + G +      
Sbjct: 111 VCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQAR--QLKPGDNFRLLFT 165
Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT 759
           A    Y APE       +T  D++S G ++  L++G  P   +   N+ II         
Sbjct: 166 APE--YYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE--TNQQII--------- 212
Query: 760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            E IM         +F++  I+ +    R   K   +R T +E +Q
Sbjct: 213 -ENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPAFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 579 LKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNG--NLWDALHKGLVHLDWPT 634
           +K E++ L  +RHKN+++L    Y        +V EY   G   + D++ +    +    
Sbjct: 53  VKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVC--Q 110
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
            H     +  GL YLH      I+H+DIK  N+LL      K++  G+A+ L      D+
Sbjct: 111 AHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDT 167
Query: 695 TTTVIAGTYGYLAPEYA--YSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
             T   G+  +  PE A    + +  K D++S GV L  + TG  P E D
Sbjct: 168 CRTS-QGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD 216

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 57/324 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 12  DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 65
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +++       E   +      ++V+L    S     L++ E M  G+L   L      ++
Sbjct: 66  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEME 121
Query: 632 ------WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 122 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 178
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 179 TRDIXETDXXRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 232
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG +  LDK    +  D + +++R+   C   +P  
Sbjct: 233 QPYQG--LSNEQVLRFV------MEGGL--LDK--PDNCPDMLFELMRM---CWQYNPKM 277
Query: 797 RPTMNEVVQLLAEADPCRFESCKF 820
           RP+  E++  + E     F    F
Sbjct: 278 RPSFLEIISSIKEEMEPGFREVSF 301

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 80/314 (25%)
Query: 534 VGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G G  G V +      G+  AV K+  +  K +A   ++    + L +E++ + ++ +H
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEK----EALMSELKIMSHLGQH 109
Query: 592 KNIVKL---------------YCYFSSLYCNL-------LVYEYMPNGNLWDALH-KGLV 628
           +NIV L               YC +  L   L       L Y Y P+ N  + L  + L+
Sbjct: 110 ENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKRPPGLEYSYNPSHNPEEQLSSRDLL 169
Query: 629 HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
           H         +  VAQG+A+L        IHRD+ + N+LL   +  K+ DFG+A+ +  
Sbjct: 170 HF--------SSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIM- 217
Query: 689 RGGKDSTTTVIAGT----YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
               + +  ++ G       ++APE  +    T + DV+S+G++L E+            
Sbjct: 218 ----NDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIF----------- 262
Query: 745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRD--EMIQ-------VLRIAIRCTSKSPA 795
                    S+ ++   GI+  ++ K     +D  +M Q       +  I   C +  P 
Sbjct: 263 ---------SLGLNPYPGIL--VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPT 311
Query: 796 TRPTMNEVVQLLAE 809
            RPT  ++   L E
Sbjct: 312 HRPTFQQICSFLQE 325

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E + + N+ H+ +V+LY   +      ++ EYM NG L + L +           ++   
Sbjct: 54  EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKD 113
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           V + + YL        +HRD+ + N L++     KV+DFG+++ +      D  T+    
Sbjct: 114 VCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL----DDEYTSSRGS 166
Query: 702 TY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
            +   +  PE    SK ++K D+++FGV++ E+ + G+ P E
Sbjct: 167 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE 208

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 17/170 (10%)
Query: 582 EVETLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           EVETL   + +KNI++L  +F       LV+E +  G++   + K   H +     ++  
Sbjct: 60  EVETLYQCQGNKNILELIEFFEDDTRFYLVFEKLQGGSILAHIQK-QKHFNEREASRVVR 118
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDV--NYQP-KVADFGIAKVLQARGGKDSTTT 697
            VA  L +LH      I HRD+K  NIL +      P K+ DF +   ++        TT
Sbjct: 119 DVAAALDFLH---TKGIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKLNNSCTPITT 175
Query: 698 ----VIAGTYGYLAPEYA--YSSKAT---TKCDVYSFGVVLMELITGRKP 738
                  G+  Y+APE    ++ +AT    +CD++S GVVL  +++G  P
Sbjct: 176 PELTTPCGSAEYMAPEVVEVFTDQATFYDKRCDLWSLGVVLYIMLSGYPP 225

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 42/221 (19%)
Query: 537 GGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIV 595
           G  GTVYK + +  GE V +     +  + ++   ++  LD     E   + ++ + ++ 
Sbjct: 33  GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD-----EAYVMASVDNPHVC 87
Query: 596 KLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWPTRHKIAFGVAQGLA 647
           +L   C  S++    L+ + MP G L D +  HK  +     L+W  +      +A+G+ 
Sbjct: 88  RLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQ------IAKGMN 138
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------QARGGKDSTTTVIA 700
           YL    L   +HRD+ + N+L+      K+ DFG+AK+L        A GGK        
Sbjct: 139 YLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK---- 191
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
               ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 192 ----WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 228

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL 653
           +VKL   F       +V EY+  G ++  L + +     P     A  +     YLH   
Sbjct: 124 LVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-- 180
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS 713
              +I+RD+K  N+L+D     +V DFG AK ++        T  + GT  YLAPE   S
Sbjct: 181 -LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------ATWTLCGTPEYLAPEIILS 233
Query: 714 SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                  D ++ GV++ E+  G  P    F D    IY
Sbjct: 234 KGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 268

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 125/273 (45%), Gaps = 29/273 (10%)
Query: 10  LPDFSPMQNL---RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFR 66
           + D  P++NL    RL+LS+N  +    LS   LT+L+ LSF+ N    L   P +++  
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLK--PLANLTT 174
Query: 67  LTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYN 126
           L +L I       +     + +  +T+L  L  T N I+   P  +G+L NL +L L  N
Sbjct: 175 LERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 127 Q-QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
           Q +  GT    L +LT LTDLD++ N +S   P S   L KL  L+L  N +S    S +
Sbjct: 228 QLKDIGT----LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPL 279
Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
           A  T LT L L +N L    P  +     L  L L  N +S   P  V S  KLQ     
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFS 335
Query: 246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP 278
            N  S V   SLA   N+      +N +    P
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 104/236 (44%), Gaps = 45/236 (19%)
Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLE--LYYNQQLAGTIPEELGNLTELTDLDMSV 150
           +LT +  + N +T   P     LKNL +L   L  N Q+A   P  L NLT LT L +  
Sbjct: 64  NLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 151 NHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLG 210
           N ++   P  +  L  L  L+L +N++S +IS+ ++  T+L  LS   N +T   P  L 
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 211 QWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN 270
             + L  LD+S NK+S                              LA+  NL     +N
Sbjct: 171 NLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIATN 204
Query: 271 NHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP 326
           N +    P GIL+    ++ +LS N        T+ +  NL++L +  NQIS   P
Sbjct: 205 NQISDITPLGILT----NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 42/221 (19%)
Query: 537 GGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIV 595
           G  GTVYK + +  GE V +     +  + ++   ++  LD     E   + ++ + ++ 
Sbjct: 26  GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD-----EAYVMASVDNPHVC 80
Query: 596 KLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH----LDWPTRHKIAFGVAQGLA 647
           +L   C  S++    L+ + MP G L D +  HK  +     L+W  +      +A+G+ 
Sbjct: 81  RLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQ------IAKGMN 131
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------QARGGKDSTTTVIA 700
           YL    L   +HRD+ + N+L+      K+ DFG+AK+L        A GGK        
Sbjct: 132 YLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK---- 184
Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE 740
               ++A E       T + DV+S+GV + EL+T G KP +
Sbjct: 185 ----WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 70  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 120
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
           EY   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 121 EYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 177
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   ++ADFG+A+ +        TT        ++APE  +    
Sbjct: 178 CIHRDLAARNVLVTENNVMRIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 236
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 237 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 281
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 282 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 313

>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric KinaseRNASE Ire1 Length = 448

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 54/248 (21%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G SGTV       G  VAVK++      +   D   +++   L TE +      H N
Sbjct: 41  LGYGSSGTVVFQGSFQGRPVAVKRML-----IDFCDIALMEI--KLLTESDD-----HPN 88
Query: 594 IVKLYC--------YFSSLYCNLLVYEYMPNGNLWD---ALHKGLVHLDWPTRHKIAFGV 642
           +++ YC        Y +   CNL + + + + N+ D    L K    +       +   +
Sbjct: 89  VIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPI------SLLRQI 142
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDV-------------NYQPKVADFGIAKVLQAR 689
           A G+A+LH      IIHRD+K  NIL+               N +  ++DFG+ K L + 
Sbjct: 143 ASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDS- 198
Query: 690 GGKDSTTTVI---AGTYGYLAPEYAYSS---KATTKCDVYSFGVVLMELIT-GRKPVEDD 742
            G+      +   +GT G+ APE    S   + T   D++S G V   +++ G+ P  D 
Sbjct: 199 -GQXXFRXNLNNPSGTSGWRAPELLEESTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDK 257
Query: 743 FGDNKNII 750
           +    NII
Sbjct: 258 YSRESNII 265

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 58/300 (19%)
Query: 534 VGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G G  G V +      G+  AV K+  +  K +A   ++    + L +E++ + ++ +H
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEK----EALMSELKIMSHLGQH 109
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH-KGLVHLD------WPTRHKIAFG--V 642
           +NIV L    +     L++ EY   G+L + L  K    LD         R  + F   V
Sbjct: 110 ENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQV 169
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           AQG+A+L        IHRD+ + N+LL   +  K+ DFG+A+ +      + +  ++ G 
Sbjct: 170 AQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIM-----NDSNYIVKGN 221
Query: 703 ----YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
                 ++APE  +    T + DV+S+G++L E+                     S+ ++
Sbjct: 222 ARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIF--------------------SLGLN 261
Query: 759 TKEGIMEVLDKKLSGSFRD--EMIQ-------VLRIAIRCTSKSPATRPTMNEVVQLLAE 809
              GI+  ++ K     +D  +M Q       +  I   C +  P  RPT  ++   L E
Sbjct: 262 PYPGIL--VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQE 319

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 66/335 (19%)
Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQ 572
           D+ E+  E +T   ++GQG  G VY+    D+  GE    VAVK +       SAS  ++
Sbjct: 11  DEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRER 65
Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD- 631
           ++       E   +      ++V+L    S     L+V E M +G+L   L       + 
Sbjct: 66  IEF----LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAEN 121
Query: 632 -----WPTRH---KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
                 PT     ++A  +A G+AYL+       +HR++ + N ++  ++  K+ DFG+ 
Sbjct: 122 NPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRNLAARNCMVAHDFTVKIGDFGMT 178
Query: 684 KVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           + +       +GGK            ++APE       TT  D++SFGVVL E+      
Sbjct: 179 RDIYETDYYRKGGKGLLPV------RWMAPESLKDGVFTTSSDMWSFGVVLWEI------ 226
Query: 739 VEDDFGDNKNIIYWVSIKVDTKEGIM--EVLDKKLSGSFRDEMI----QVLRIAIRCTSK 792
                          S+     +G+   +VL   + G + D+      +V  +   C   
Sbjct: 227 --------------TSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQF 272
Query: 793 SPATRPTMNEVVQLLAEA-DPCRFESCKFPNKSNK 826
           +P  RPT  E+V LL +   P   E   F ++ NK
Sbjct: 273 NPNMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK 307

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 15/155 (9%)
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIA--FGVAQGLA 647
           +H NI+ L   +       +V E    G L D +   L    +  R   A  F + + + 
Sbjct: 74  QHPNIITLKDVYDDGKYVYVVTELXKGGELLDKI---LRQKFFSEREASAVLFTITKTVE 130
Query: 648 YLHHGLLSPIIHRDIKSTNIL-LDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      ++HRD+K +NIL +D +  P   ++ DFG AK L+A  G   T    A   
Sbjct: 131 YLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLXTPCYTAN-- 185
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
            ++APE          CD++S GV+L   +TG  P
Sbjct: 186 -FVAPEVLERQGYDAACDIWSLGVLLYTXLTGYTP 219

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 66/335 (19%)
Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGEV---VAVKKLWSQRTKVSASDTDQ 572
           D+ E+  E +T   ++GQG  G VY+    D+  GE    VAVK +       SAS  ++
Sbjct: 10  DEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRER 64
Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD- 631
           ++       E   +      ++V+L    S     L+V E M +G+L   L       + 
Sbjct: 65  IEF----LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAEN 120
Query: 632 -----WPTRH---KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
                 PT     ++A  +A G+AYL+       +HR++ + N ++  ++  K+ DFG+ 
Sbjct: 121 NPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRNLAARNCMVAHDFTVKIGDFGMT 177
Query: 684 KVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           + +       +GGK            ++APE       TT  D++SFGVVL E+      
Sbjct: 178 RDIYETDYYRKGGKGLLPV------RWMAPESLKDGVFTTSSDMWSFGVVLWEI------ 225
Query: 739 VEDDFGDNKNIIYWVSIKVDTKEGIM--EVLDKKLSGSFRDEMI----QVLRIAIRCTSK 792
                          S+     +G+   +VL   + G + D+      +V  +   C   
Sbjct: 226 --------------TSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQF 271
Query: 793 SPATRPTMNEVVQLLAEA-DPCRFESCKFPNKSNK 826
           +P  RPT  E+V LL +   P   E   F ++ NK
Sbjct: 272 NPNMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK 306

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 57/324 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 40  DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 93
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +++       E   +      ++V+L    S     L++ E M  G+L   L      ++
Sbjct: 94  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEME 149
Query: 632 ------WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 150 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 206
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 207 TRDIYETDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 260
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG   +LDK    +  D + +++R+   C   +P  
Sbjct: 261 QPYQG--LSNEQVLRFV------MEG--GLLDK--PDNCPDMLFELMRM---CWQYNPKM 305
Query: 797 RPTMNEVVQLLAEADPCRFESCKF 820
           RP+  E++  + E     F    F
Sbjct: 306 RPSFLEIISSIKEEMEPGFREVSF 329

>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The Kinase-Ribonuclease Domain Of Ire1 Length = 448

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 54/248 (21%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G SGTV       G  VAVK++      +   D   +++   L TE +      H N
Sbjct: 41  LGYGSSGTVVFQGSFQGRPVAVKRML-----IDFCDIALMEI--KLLTESDD-----HPN 88
Query: 594 IVKLYC--------YFSSLYCNLLVYEYMPNGNLWD---ALHKGLVHLDWPTRHKIAFGV 642
           +++ YC        Y +   CNL + + + + N+ D    L K    +       +   +
Sbjct: 89  VIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPI------SLLRQI 142
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDV-------------NYQPKVADFGIAKVLQAR 689
           A G+A+LH      IIHRD+K  NIL+               N +  ++DFG+ K L + 
Sbjct: 143 ASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDS- 198
Query: 690 GGKDSTTTVI---AGTYGYLAPEYAYSS---KATTKCDVYSFGVVLMELIT-GRKPVEDD 742
            G+      +   +GT G+ APE    S   + T   D++S G V   +++ G+ P  D 
Sbjct: 199 -GQXXFRXNLNNPSGTSGWRAPELLEESTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDK 257
Query: 743 FGDNKNII 750
           +    NII
Sbjct: 258 YSRESNII 265

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 57/324 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 5   DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 58
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +++       E   +      ++V+L    S     L++ E M  G+L   L      ++
Sbjct: 59  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEME 114
Query: 632 ------WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 115 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 171
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 172 TRDIYETDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 225
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG +  LDK    +  D + +++R+   C   +P  
Sbjct: 226 QPYQG--LSNEQVLRFV------MEGGL--LDK--PDNCPDMLFELMRM---CWQYNPKM 270
Query: 797 RPTMNEVVQLLAEADPCRFESCKF 820
           RP+  E++  + E     F    F
Sbjct: 271 RPSFLEIISSIKEEMEPGFREVSF 294

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 144/324 (44%), Gaps = 57/324 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 8   DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 61
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNL---WDALHKGLV 628
           +++       E   +      ++V+L    S     L++ E M  G+L     +L   + 
Sbjct: 62  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMA 117
Query: 629 H---LDWPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
           +   L  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 118 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 174
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 175 TRDIYETDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 228
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG   +LDK    +  D + +++R+   C   +P  
Sbjct: 229 QPYQG--LSNEQVLRFV------MEG--GLLDK--PDNCPDMLFELMRM---CWQYNPKM 273
Query: 797 RPTMNEVVQLLAEADPCRFESCKF 820
           RP+  E++  + E     F    F
Sbjct: 274 RPSFLEIISSIKEEMEPGFREVSF 297

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 57/324 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 12  DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 65
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +++       E   +      ++V+L    S     L++ E M  G+L   L      ++
Sbjct: 66  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEME 121
Query: 632 ------WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 122 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 178
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 179 TRDIYETDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 232
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG   +LDK    +  D + +++R+   C   +P  
Sbjct: 233 QPYQG--LSNEQVLRFV------MEG--GLLDK--PDNCPDMLFELMRM---CWQYNPKM 277
Query: 797 RPTMNEVVQLLAEADPCRFESCKF 820
           RP+  E++  + E     F    F
Sbjct: 278 RPSFLEIISSIKEEMEPGFREVSF 301

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 57/324 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 9   DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 62
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +++       E   +      ++V+L    S     L++ E M  G+L   L      ++
Sbjct: 63  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEME 118
Query: 632 ------WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 119 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 175
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 176 TRDIYETDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 229
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG +  LDK    +  D + +++R+   C   +P  
Sbjct: 230 QPYQG--LSNEQVLRFV------MEGGL--LDK--PDNCPDMLFELMRM---CWQYNPKM 274
Query: 797 RPTMNEVVQLLAEADPCRFESCKF 820
           RP+  E++  + E     F    F
Sbjct: 275 RPSFLEIISSIKEEMEPGFREVSF 298

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 20/213 (9%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G    V + I+  +G+  AVK +   +   S   + +      LK E      ++H 
Sbjct: 32  IGKGAFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTE-----DLKREASICHMLKHP 86
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK----GLVHLDWPTRHKIAFGVAQGLAY 648
           +IV+L   +SS     +V+E+M   +L   + K    G V+ +    H +   + + L Y
Sbjct: 87  HIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMR-QILEALRY 145
Query: 649 LHHGLLSPIIHRDIKSTNILL--DVNYQP-KVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
            H    + IIHRD+K  N+LL    N  P K+ DFG+A  L   G          GT  +
Sbjct: 146 CHD---NNIIHRDVKPENVLLASKENSAPVKLGDFGVAIQLGESG---LVAGGRVGTPHF 199
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           +APE           DV+  GV+L  L++G  P
Sbjct: 200 MAPEVVKREPYGKPVDVWGCGVILFILLSGCLP 232

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 57/324 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 11  DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 64
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +++       E   +      ++V+L    S     L++ E M  G+L   L      ++
Sbjct: 65  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEME 120
Query: 632 ------WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                  P+  K+   A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+
Sbjct: 121 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM 177
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 178 TRDIYETDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 231
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG   +LDK    +  D + +++R+   C   +P  
Sbjct: 232 QPYQG--LSNEQVLRFV------MEG--GLLDK--PDNCPDMLFELMRM---CWQYNPKM 276
Query: 797 RPTMNEVVQLLAEADPCRFESCKF 820
           RP+  E++  + E     F    F
Sbjct: 277 RPSFLEIISSIKEEMEPGFREVSF 300

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +F VA+G+ +L        IHRD+ + NILL  N   K+ DFG+A+ +     K+     
Sbjct: 205 SFQVARGMEFLSS---RKCIHRDLAARNILLSENNVVKICDFGLARDIY----KNPDYVR 257
Query: 699 IAGTY---GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP-----VEDDFGDNKNI 749
              T     ++APE  +    +TK DV+S+GV+L E+ + G  P     +++DF      
Sbjct: 258 KGDTRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSR--- 314
Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
                     +EG M +   + S        ++ +I + C  + P  RP   E+V+ L +
Sbjct: 315 ---------LREG-MRMRAPEYSTP------EIYQIMLDCWHRDPKERPRFAELVEKLGD 358

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF---GVAQGL 646
           +H NI+ L   +       LV E M  G L D +    +   + +  + +F    + + +
Sbjct: 79  QHPNIITLKDVYDDGKHVYLVTELMRGGELLDKI----LRQKFFSEREASFVLHTIGKTV 134
Query: 647 AYLHHGLLSPIIHRDIKSTNIL-LDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGT 702
            YLH      ++HRD+K +NIL +D +  P   ++ DFG AK L+A  G   T    A  
Sbjct: 135 EYLHS---QGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTPCYTAN- 190
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
             ++APE          CD++S G++L  ++ G  P  +   D 
Sbjct: 191 --FVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDT 232

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 46/235 (19%)
Query: 522 REILEAMTEKNKVGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           R+ ++    +   GQG  GTV    + ++G  VA+KK+     +       +LQ+     
Sbjct: 19  RKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKV----IQDPRFRNRELQI----- 69
Query: 581 TEVETLGNIRHKNIVKLYCYFSSL--------YCNLLVYEYMPNGNLWDALHKGLVHLDW 632
             ++ L  + H NIV+L  YF +L        Y N +V EY+P     D LH+   +   
Sbjct: 70  --MQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLN-VVMEYVP-----DTLHRCCRNY-- 119
Query: 633 PTRHKIA----------FGVAQGLAYLHHGLLSPIIHRDIKSTNILL-DVNYQPKVADFG 681
             R ++A          F + + +  LH   ++ + HRDIK  N+L+ + +   K+ DFG
Sbjct: 120 -YRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN-VCHRDIKPHNVLVNEADGTLKLCDFG 177
Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITG 735
            AK L      +     I   Y Y APE  + ++  TT  D++S G +  E++ G
Sbjct: 178 SAKKLSP---SEPNVAYICSRY-YRAPELIFGNQHYTTAVDIWSVGCIFAEMMLG 228

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV-IA 700
           V+ G+ YL        +HRD+ + N+LL   +  K++DFG++K L   G  DS  T   A
Sbjct: 119 VSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKAL---GADDSYYTARSA 172
Query: 701 GTY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           G +   + APE     K +++ DV+S+GV + E ++ G+KP
Sbjct: 173 GKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKP 213

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 125/273 (45%), Gaps = 29/273 (10%)
Query: 10  LPDFSPMQNL---RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFR 66
           + D  P++NL    RL+LS+N  +    LS   LT+L+ L+F+ N    L   P +++  
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLNFSSNQVTDLK--PLANLTT 174
Query: 67  LTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYN 126
           L +L I       +     + +  +T+L  L  T N I+   P  +G+L NL +L L  N
Sbjct: 175 LERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 127 Q-QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
           Q +  GT    L +LT LTDLD++ N +S   P S   L KL  L+L  N +S    S +
Sbjct: 228 QLKDIGT----LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPL 279
Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
           A  T LT L L +N L    P  +     L  L L  N +S   P  V S  KLQ     
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 335
Query: 246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP 278
            N  S V   SLA   N+      +N +    P
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 21/214 (9%)
Query: 115 LKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN 174
           L NL Q+  + N QL    P  L NLT+L D+ M+ N ++   P  +  L  L  L L+N
Sbjct: 62  LNNLTQIN-FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 175 NSLSGEISSV--IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAK 232
           N    +I+ +  + N T L  L L  N+++      L   + L  L+ S N+++   P  
Sbjct: 117 N----QITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP-- 168
Query: 233 VCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDL 292
           + +   L+   +  N  S +    LA+  NL     +NN +    P GIL+    ++ +L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILT----NLDEL 222
Query: 293 SYNSFSGPIANTVGNARNLSELFMQRNQISGFIP 326
           S N        T+ +  NL++L +  NQIS   P
Sbjct: 223 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT  YLAP  
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEYLAPAI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 17/156 (10%)
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF---GVAQGL 646
           +H NI+ L   +       LV E M  G L D +    +   + +  + +F    + + +
Sbjct: 79  QHPNIITLKDVYDDGKHVYLVTELMRGGELLDKI----LRQKFFSEREASFVLHTIGKTV 134
Query: 647 AYLHHGLLSPIIHRDIKSTNIL-LDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGT 702
            YLH      ++HRD+K +NIL +D +  P   ++ DFG AK L+A  G   T    A  
Sbjct: 135 EYLHS---QGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTPCYTAN- 190
Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
             ++APE          CD++S G++L  ++ G  P
Sbjct: 191 --FVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTP 224

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 24/208 (11%)
Query: 534 VGQGGSG-TVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G  V   D      VA+KKL       S    +Q    +  + E+  +  + HK
Sbjct: 32  IGSGAQGIVVAAYDAILERNVAIKKL-------SRPFQNQTHAKRAYR-ELVLMKVVNHK 83
Query: 593 NIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
           NI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q L 
Sbjct: 84  NIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDH------ERMSYLLYQMLV 137
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y A
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART----AGTSFMMTPYVVTRYYRA 193
Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITG 735
           PE           D++S GV++ E+I G
Sbjct: 194 PEVILGMGYKENVDIWSVGVIMGEMIKG 221

>pdb|4ALU|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 31/163 (19%)
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           Q L  + H     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD+  T   GT
Sbjct: 165 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KDTVYTDFDGT 219
Query: 703 YGYLAPEY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             Y  PE+  Y         V+S G++L +++ G  P E D    +  ++          
Sbjct: 220 RVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF---------- 269
Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
                        FR  +    +  IR C +  P+ RPT  E+
Sbjct: 270 -------------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 299

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 17/170 (10%)
Query: 582 EVETLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           EVE L   + H+N+++L  +F       LV+E M  G++   +HK   H +      +  
Sbjct: 60  EVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRR-HFNELEASVVVQ 118
Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTT 697
            VA  L +LH+     I HRD+K  NIL +   Q    K+ DF +   ++  G     +T
Sbjct: 119 DVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPIST 175
Query: 698 ----VIAGTYGYLAPEY--AYSSKAT---TKCDVYSFGVVLMELITGRKP 738
                  G+  Y+APE   A+S +A+    +CD++S GV+L  L++G  P
Sbjct: 176 PELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPP 225

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 118/280 (42%), Gaps = 31/280 (11%)
Query: 534 VGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +G+G  G VY+     + GE + V        K    D   L   +   +E   + N+ H
Sbjct: 32  LGEGFFGEVYEGVYTNHKGEKINVA------VKTCKKDC-TLDNKEKFMSEAVIMKNLDH 84
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
            +IVKL           ++ E  P G L   L +    L   T    +  + + +AYL  
Sbjct: 85  PHIVKLIGIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLES 143
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                 +HRDI   NIL+      K+ DFG+++ ++      ++ T +     +++PE  
Sbjct: 144 ---INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLP--IKWMSPESI 198
Query: 712 YSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
              + TT  DV+ F V + E+++ G++P    + +NK++I           G++E  D+ 
Sbjct: 199 NFRRFTTASDVWMFAVCMWEILSFGKQPFF--WLENKDVI-----------GVLEKGDRL 245
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
                   ++  L    RC    P+ RP   E+V  L++ 
Sbjct: 246 PKPDLCPPVLYTL--MTRCWDYDPSDRPRFTELVCSLSDV 283

>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor Length = 276

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 22/230 (9%)
Query: 521 QREILEAMTEKNKV-GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           ++E LE+  +   + G GG G+VY  I ++    VA+K +   R     SD  +L     
Sbjct: 1   EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTR 56
Query: 579 LKTEVETLGNIRH--KNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPT 634
           +  EV  L  +      +++L  +F      +L+ E   P  +L+D +  +G +  +   
Sbjct: 57  VPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELA- 115
Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKD 693
                + V + + + H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD
Sbjct: 116 -RSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KD 166
Query: 694 STTTVIAGTYGYLAPEYA-YSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           +  T   GT  Y  PE+  Y         V+S G++L +++ G  P E D
Sbjct: 167 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD 216

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKVVN 81
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 82  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDH------ERMSYLLYQM 135
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 136 LVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART----AGTSFMMTPYVVTRYY 191
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S GV++ E+I G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGVIMGEMIKG 221

>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin Length = 434

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 127/307 (41%), Gaps = 69/307 (22%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G G SGTV       G  VAVK++      ++        ++  L TE +      H N
Sbjct: 23  LGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIAL-------MEIKLLTESDD-----HPN 70
Query: 594 IVKLYC--------YFSSLYCNLLVYEYMPNGNLWD---ALHKGLVHLDWPTRHKIAFGV 642
           +++ YC        Y +   CNL + + + + N+ D    L K    +       +   +
Sbjct: 71  VIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPI------SLLRQI 124
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDV-------------NYQPKVADFGIAKVLQAR 689
           A G+A+LH      IIHRD+K  NIL+               N +  ++DFG+ K L + 
Sbjct: 125 ASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDS- 180
Query: 690 GGKDSTTTVI---AGTYGYLAPEYAYSS-------KATTKCDVYSFGVVLMELIT-GRKP 738
            G+      +   +GT G+ APE    S       + T   D++S G V   +++ G+ P
Sbjct: 181 -GQXXFRXNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHP 239
Query: 739 VEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP 798
             D +    NII  +   +D  + +    D+ L     D + Q++          P  RP
Sbjct: 240 FGDKYSRESNIIRGI-FSLDEMKCLH---DRSLIAEATDLISQMI-------DHDPLKRP 288
Query: 799 TMNEVVQ 805
           T  +V++
Sbjct: 289 TAMKVLR 295

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 57/324 (17%)
Query: 520 DQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-------VAVKKLWSQRTKVSASDTD 571
           D+ E+  E +T   ++GQG  G VY+  +  G V       VA+K +       +AS  +
Sbjct: 5   DEWEVAREKITMSRELGQGSFGMVYE-GVAKGVVKDEPETRVAIKTV-----NEAASMRE 58
Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +++       E   +      ++V+L    S     L++ E M  G+L   L      ++
Sbjct: 59  RIEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEME 114
Query: 632 ------WPTRHKI---AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                  P+  K+   A  +A G+AYL+    +  +HRD+ + N  +  ++  K+ DFG+
Sbjct: 115 NNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCXVAEDFTVKIGDFGM 171
Query: 683 AKVLQA-----RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
            + +       +GGK            +++PE       TT  DV+SFGVVL E+ T   
Sbjct: 172 TRDIYETDYYRKGGKGLLPV------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 225
Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
           +P +     N+ ++ +V       EG +  LDK    +  D +++++R+   C   +P  
Sbjct: 226 QPYQG--LSNEQVLRFVM------EGGL--LDK--PDNCPDMLLELMRM---CWQYNPKM 270
Query: 797 RPTMNEVVQLLAEADPCRFESCKF 820
           RP+  E++  + E     F    F
Sbjct: 271 RPSFLEIISSIKEEMEPGFREVSF 294

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 29/176 (16%)
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +     KD     
Sbjct: 206 SFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIY----KDPDYVR 258
Query: 699 IAGTY---GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVS 754
                    ++APE  +    T + DV+SFGV+L E+ + G  P             +  
Sbjct: 259 KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP-------------YPG 305
Query: 755 IKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
           +K+D +    + E    +       EM Q +   + C    P+ RPT +E+V+ L 
Sbjct: 306 VKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTFSELVEHLG 358

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGKFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 3   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 62
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 63  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 117
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 118 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 172
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 173 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 222

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 122 HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 181
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 182 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 234
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 235 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 274

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 116 HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 175
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 176 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 228
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 229 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 268

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 118/280 (42%), Gaps = 31/280 (11%)
Query: 534 VGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +G+G  G VY+     + GE + V        K    D   L   +   +E   + N+ H
Sbjct: 16  LGEGFFGEVYEGVYTNHKGEKINVA------VKTCKKDC-TLDNKEKFMSEAVIMKNLDH 68
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
            +IVKL           ++ E  P G L   L +    L   T    +  + + +AYL  
Sbjct: 69  PHIVKLIGIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLES 127
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                 +HRDI   NIL+      K+ DFG+++ ++      ++ T +     +++PE  
Sbjct: 128 ---INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLP--IKWMSPESI 182
Query: 712 YSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
              + TT  DV+ F V + E+++ G++P    + +NK++I           G++E  D+ 
Sbjct: 183 NFRRFTTASDVWMFAVCMWEILSFGKQPFF--WLENKDVI-----------GVLEKGDRL 229
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
                   ++  L    RC    P+ RP   E+V  L++ 
Sbjct: 230 PKPDLCPPVLYTL--MTRCWDYDPSDRPRFTELVCSLSDV 267

>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors Length = 273

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 45/278 (16%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH- 591
           +G GG G+VY  I ++    VA+K +   R     SD  +L     +  EV  L  +   
Sbjct: 12  LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTRVPMEVVLLKKVSSG 67
Query: 592 -KNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAY 648
              +++L  +F      +L+ E   P  +L+D +  +G +  +        + V + + +
Sbjct: 68  FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELA--RSFFWQVLEAVRH 125
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD+  T   GT  Y  
Sbjct: 126 CHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KDTVYTDFDGTRVYSP 177
Query: 708 PEYA-YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV 766
           PE+  Y         V+S G++L +++ G  P E D                      E+
Sbjct: 178 PEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---------------------EEI 216
Query: 767 LDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEV 803
           +  ++   FR  +    +  IR C +  P+ RPT  E+
Sbjct: 217 IGGQV--FFRQRVSSECQHLIRWCLALRPSDRPTFEEI 252

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 29/176 (16%)
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +     KD     
Sbjct: 199 SFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIY----KDPDYVR 251
Query: 699 IAGTY---GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVS 754
                    ++APE  +    T + DV+SFGV+L E+ + G  P             +  
Sbjct: 252 KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP-------------YPG 298
Query: 755 IKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
           +K+D +    + E    +       EM Q +   + C    P+ RPT +E+V+ L 
Sbjct: 299 VKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTFSELVEHLG 351

>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine Length = 273

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 21/216 (9%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH- 591
           +G GG G+VY  I ++    VA+K +   R     SD  +L     +  EV  L  +   
Sbjct: 12  LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTRVPMEVVLLKKVSSG 67
Query: 592 -KNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAY 648
              +++L  +F      +L+ E   P  +L+D +  +G +  +        + V + + +
Sbjct: 68  FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELA--RSFFWQVLEAVRH 125
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD+  T   GT  Y  
Sbjct: 126 CHN---XGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KDTVYTDFDGTRVYSP 177
Query: 708 PEYA-YSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           PE+  Y         V+S G++L +++ G  P E D
Sbjct: 178 PEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD 213

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 29/176 (16%)
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +     KD     
Sbjct: 204 SFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIY----KDPDYVR 256
Query: 699 IAGTY---GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVS 754
                    ++APE  +    T + DV+SFGV+L E+ + G  P             +  
Sbjct: 257 KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP-------------YPG 303
Query: 755 IKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
           +K+D +    + E    +       EM Q +   + C    P+ RPT +E+V+ L 
Sbjct: 304 VKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTFSELVEHLG 356

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 32/240 (13%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 86  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 145
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 146 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 198
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI 763
            Y+APE     K    CD++S GV++  L+ G  P    F  N  +     +K   + G 
Sbjct: 199 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPP----FYSNHGLAISPGMKTRIRMGQ 253
Query: 764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKS-PATRPTMNEVVQLLAEADPCRFESCKFPN 822
            E  + + S     E+ + +++ IR   K+ P  R T+ E +       P   +S K P 
Sbjct: 254 YEFPNPEWS-----EVSEEVKMLIRNLLKTEPTQRMTITEFMN-----HPWIMQSTKVPQ 303

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 3   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 62
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 63  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 117
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 118 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 172
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 173 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 222

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 126/274 (45%), Gaps = 32/274 (11%)
Query: 10  LPDFSPMQNL---RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKL-PESSIF 65
           + D  P++NL    RL+LS+N  +    LS   LT+L+ LSF    G ++  L P +++ 
Sbjct: 123 ITDIDPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLSF----GNQVTDLKPLANLT 176
Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYY 125
            L +L I       +     + +  +T+L  L  T N I+   P  +G+L NL +L L  
Sbjct: 177 TLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 229
Query: 126 NQ-QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
           NQ +  GT    L +LT LTDLD++ N +S   P S   L KL  L+L  N +S    S 
Sbjct: 230 NQLKDIGT----LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISP 281
Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           +A  T LT L L +N L    P  +     L  L L  N +S   P  V S  KLQ    
Sbjct: 282 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 337
Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP 278
             N  S V   SLA   N+      +N +    P
Sbjct: 338 ANNKVSDV--SSLANLTNINWLSAGHNQISDLTP 369

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 105/236 (44%), Gaps = 46/236 (19%)
Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLE--LYYNQQLAGTIPEELGNLTELTDLDMSV 150
           +LT +  + N +T   P     LKNL +L   L  N Q+A   P  L NLT LT L +  
Sbjct: 68  NLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 120
Query: 151 NHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLG 210
           N ++   P  +  L  L  L+L +N++S +IS+ ++  T+L  LS + N +T   P  L 
Sbjct: 121 NQITDIDP--LKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLS-FGNQVTDLKP--LA 173
Query: 211 QWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN 270
             + L  LD+S NK+S                              LA+  NL     +N
Sbjct: 174 NLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIATN 207
Query: 271 NHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP 326
           N +    P GIL+    ++ +LS N        T+ +  NL++L +  NQIS   P
Sbjct: 208 NQISDITPLGILT----NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 259

>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7- Azaindole Length = 273

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 21/216 (9%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH- 591
           +G GG G+VY  I ++    VA+K +   R     SD  +L     +  EV  L  +   
Sbjct: 12  LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRI----SDWGELPNGTRVPMEVVLLKKVSSG 67
Query: 592 -KNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAY 648
              +++L  +F      +L+ E   P  +L+D +  +G +  +        + V + + +
Sbjct: 68  FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELA--RSFFWQVLEAVRH 125
Query: 649 LHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
            H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD+  T   GT  Y  
Sbjct: 126 CHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KDTVYTDFDGTRVYSP 177
Query: 708 PEYA-YSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           PE+  Y         V+S G++L +++ G  P E D
Sbjct: 178 PEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD 213

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 126/274 (45%), Gaps = 32/274 (11%)
Query: 10  LPDFSPMQNL---RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKL-PESSIF 65
           + D  P++NL    RL+LS+N  +    LS   LT+L+ LSF    G ++  L P +++ 
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLSF----GNQVTDLKPLANLT 177
Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYY 125
            L +L I       +     + +  +T+L  L  T N I+   P  +G+L NL +L L  
Sbjct: 178 TLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230
Query: 126 NQ-QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
           NQ +  GT    L +LT LTDLD++ N +S   P S   L KL  L+L  N +S    S 
Sbjct: 231 NQLKDIGT----LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISP 282
Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           +A  T LT L L +N L    P  +     L  L L  N +S   P  V S  KLQ    
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338
Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP 278
             N  S V   SLA   N+      +N +    P
Sbjct: 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 105/236 (44%), Gaps = 46/236 (19%)
Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLE--LYYNQQLAGTIPEELGNLTELTDLDMSV 150
           +LT +  + N +T   P     LKNL +L   L  N Q+A   P  L NLT LT L +  
Sbjct: 69  NLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121
Query: 151 NHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLG 210
           N ++   P  +  L  L  L+L +N++S +IS+ ++  T+L  LS + N +T   P  L 
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLS-FGNQVTDLKP--LA 174
Query: 211 QWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN 270
             + L  LD+S NK+S                              LA+  NL     +N
Sbjct: 175 NLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIATN 208
Query: 271 NHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP 326
           N +    P GIL+    ++ +LS N        T+ +  NL++L +  NQIS   P
Sbjct: 209 NQISDITPLGILT----NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 43/181 (23%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           VAQG+A+L        IHRD+ + N+LL   +  K+ DFG+A+ +      + +  ++ G
Sbjct: 167 VAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIM-----NDSNYIVKG 218
Query: 702 T----YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV 757
                  ++APE  +    T + DV+S+G++L E+                     S+ +
Sbjct: 219 NARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIF--------------------SLGL 258
Query: 758 DTKEGIMEVLDKKLSGSFRD--EMIQ-------VLRIAIRCTSKSPATRPTMNEVVQLLA 808
           +   GI+  ++ K     +D  +M Q       +  I   C +  P  RPT  ++   L 
Sbjct: 259 NPYPGIL--VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQ 316
Query: 809 E 809
           E
Sbjct: 317 E 317

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 118/280 (42%), Gaps = 31/280 (11%)
Query: 534 VGQGGSGTVYK--IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           +G+G  G VY+     + GE + V        K    D   L   +   +E   + N+ H
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVA------VKTCKKDC-TLDNKEKFMSEAVIMKNLDH 72
Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH 651
            +IVKL           ++ E  P G L   L +    L   T    +  + + +AYL  
Sbjct: 73  PHIVKLIGIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLES 131
Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                 +HRDI   NIL+      K+ DFG+++ ++      ++ T +     +++PE  
Sbjct: 132 ---INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLP--IKWMSPESI 186
Query: 712 YSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
              + TT  DV+ F V + E+++ G++P    + +NK++I           G++E  D+ 
Sbjct: 187 NFRRFTTASDVWMFAVCMWEILSFGKQPFF--WLENKDVI-----------GVLEKGDRL 233
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
                   ++  L    RC    P+ RP   E+V  L++ 
Sbjct: 234 PKPDLCPPVLYTL--MTRCWDYDPSDRPRFTELVCSLSDV 271

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 29/176 (16%)
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
           +F VA+G+ +L        IHRD+ + NILL      K+ DFG+A+ +     KD     
Sbjct: 197 SFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIY----KDPDYVR 249
Query: 699 IAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVS 754
                    ++APE  +    T + DV+SFGV+L E+ + G  P             +  
Sbjct: 250 KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP-------------YPG 296
Query: 755 IKVDTK--EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
           +K+D +    + E    +       EM Q +   + C    P+ RPT +E+V+ L 
Sbjct: 297 VKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM---LDCWHGEPSQRPTFSELVEHLG 349

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 594 IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           +VKL   F   S+LY   +V EY+  G ++  L + +     P     A  +     YLH
Sbjct: 103 LVKLEFSFKDNSNLY---MVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLH 158
Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +I+RD+K  N+L+D     +V DFG AK ++ R      T  + GT   LAPE 
Sbjct: 159 S---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR------TWXLCGTPEALAPEI 209
Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             S       D ++ GV++ E+  G  P    F D    IY
Sbjct: 210 ILSKGYNKAVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 70  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 120
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
            Y   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 121 AYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 177
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 236
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 237 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 281
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 282 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 313

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 77  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 136
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 137 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 189
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 190 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 229

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 78  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 137
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 138 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 190
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 191 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 230

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 76  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 135
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 136 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 188
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 189 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 228

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 72  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 131
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 132 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 184
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 185 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 224

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 29/177 (16%)
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           I   +A+ + +LH   L   +HRD+K +NI   ++   KV DFG+   +     + +  T
Sbjct: 169 IFIQIAEAVEFLHSKGL---MHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLT 225
Query: 698 VI---------AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
            +          GT  Y++PE  + +  + K D++S G++L EL                
Sbjct: 226 PMPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFEL---------------- 269
Query: 749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +Y  S +++    I +V + K    F  +  Q   +     S SP  RP   ++++
Sbjct: 270 -LYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 70  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 129
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 130 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 182
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 183 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 222

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGVFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 33/220 (15%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G GG+G V+  +D +  + VA+KK+           TD   +   L+ E++ +  + H 
Sbjct: 19  LGCGGNGLVFSAVDNDCDKRVAIKKIVL---------TDPQSVKHALR-EIKIIRRLDHD 68
Query: 593 NIVKLY--------------CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
           NIVK++                 + L    +V EYM   +L + L +G + L+   R   
Sbjct: 69  NIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMET-DLANVLEQGPL-LEEHAR-LF 125
Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVADFGIAKVLQARGGKDSTTT 697
            + + +GL Y+H    + ++HRD+K  N+ ++  +   K+ DFG+A+++          +
Sbjct: 126 MYQLLRGLKYIHS---ANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLS 182
Query: 698 VIAGTYGYLAPEYAYSSKATTKC-DVYSFGVVLMELITGR 736
               T  Y +P    S    TK  D+++ G +  E++TG+
Sbjct: 183 EGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGK 222

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 71  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 130
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 131 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 183
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 184 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 223

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 72  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 131
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 132 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 184
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 185 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 224

>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine Length = 317

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 30/235 (12%)
Query: 532 NKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+G+GG   V  ++ L+ G   A+K++     +    D ++ Q +     ++  L N  
Sbjct: 35  QKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQ----DREEAQRE----ADMHRLFN-- 84
Query: 591 HKNIVKLYCYF----SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF---GVA 643
           H NI++L  Y      + +   L+  +   G LW+ + +     ++ T  +I +   G+ 
Sbjct: 85  HPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGIC 144
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI--AKVLQARGGKDSTT----T 697
           +GL  +H        HRD+K TNILL    QP + D G      +   G + + T     
Sbjct: 145 RGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWA 201
Query: 698 VIAGTYGYLAPE-YAYSSKAT--TKCDVYSFGVVLMELITGRKPVEDDFGDNKNI 749
               T  Y APE ++  S      + DV+S G VL  ++ G  P +  F    ++
Sbjct: 202 AQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSV 256

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q  + +      ++G G    V K  + ++G   A K +  +RTK S     +  +++
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L      +
Sbjct: 64  ----EVSILKEIQHPNVITLHEVYENKTDVILIGELVAGGELFDFLAEK-ESLTEEEATE 118
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N    + K+ DFG+A  +    G +
Sbjct: 119 FLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF--GNE 173
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 223

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 55/277 (19%)
Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVY 611
           VAVK L    T+   SD         L +E+E +  I +HKNI+ L    +      ++ 
Sbjct: 70  VAVKMLKDDATEKDLSD---------LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV 120
Query: 612 EYMPNGNLWDALHK----GLVH-----------LDWPTRHKIAFGVAQGLAYLHHGLLSP 656
            Y   GNL + L      G+ +           + +       + +A+G+ YL       
Sbjct: 121 GYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QK 177
Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA 716
            IHRD+ + N+L+  N   K+ADFG+A+ +        TT        ++APE  +    
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPV-KWMAPEALFDRVY 236
Query: 717 TTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT-----KEGIMEVLDKK 770
           T + DV+SFGV++ E+ T G  P             +  I V+      KEG    +DK 
Sbjct: 237 THQSDVWSFGVLMWEIFTLGGSP-------------YPGIPVEELFKLLKEG--HRMDKP 281
Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + +  +E+  ++R    C    P+ RPT  ++V+ L
Sbjct: 282 ANCT--NELYMMMR---DCWHAVPSQRPTFKQLVEDL 313

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 61/291 (20%)
Query: 556 KKLWSQRTKVSASDTDQLQLD---KGLKTEVETLGNIRHKNIVKLYCY--------FSSL 604
           K L  ++   + S+ D++ +       K E++ + +I+++     YC         +  +
Sbjct: 64  KSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNE-----YCLTCEGIITNYDEV 118
Query: 605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF-----------GVAQGLAYLHHGL 653
           Y   ++YEYM N    D++ K   +     ++   F            V    +Y+H+  
Sbjct: 119 Y---IIYEYMEN----DSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNE- 170
Query: 654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY--A 711
              I HRD+K +NIL+D N + K++DFG ++ +  +  K S      GTY ++ PE+   
Sbjct: 171 -KNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGS-----RGTYEFMPPEFFSN 224
Query: 712 YSSKATTKCDVYSFGVVLMELITGRKPVE------DDFGD--NKNIIYWVSIKVDTKEGI 763
            SS    K D++S G+ L  +     P        + F +   KNI Y     +D    +
Sbjct: 225 ESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEY----PLDRNHFL 280
Query: 764 MEVLDKKLSGS---FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD 811
             + +KK + S     +E I  L++ +R   K+PA R T  + ++    AD
Sbjct: 281 YPLTNKKSTCSNNFLSNEDIDFLKLFLR---KNPAERITSEDALKHEWLAD 328

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 11/207 (5%)
Query: 534 VGQGGSGTVY-KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G G  G V+  +D    + V VK +  ++        D  +L K +  E+  L  + H 
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDP-KLGK-VTLEIAILSRVEHA 89
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG 652
           NI+K+   F +     LV E   +G    A       LD P    I   +   + YL   
Sbjct: 90  NIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLR-- 147
Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
            L  IIHRDIK  NI++  ++  K+ DFG A  L+ RG    T     GT  Y APE   
Sbjct: 148 -LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLE-RGKLFYT---FCGTIEYCAPEVLM 202
Query: 713 SSKAT-TKCDVYSFGVVLMELITGRKP 738
            +     + +++S GV L  L+    P
Sbjct: 203 GNPYRGPELEMWSLGVTLYTLVFEENP 229

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 81
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 82  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDH------ERMSYLLYQM 135
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 136 LCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPEVVTRYY 191
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S G ++ E+I G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 81
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 82  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDH------ERMSYLLYQM 135
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 136 LCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRYY 191
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S G ++ E+I G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 97/239 (40%), Gaps = 34/239 (14%)
Query: 516 RISFDQREILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKL--WS--QRTKVSASDT 570
           R+  D  EIL+       +G+G    V  + +  +G+V A+K +  W   +R +VS    
Sbjct: 57  RLQRDDFEILKV------IGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSC--- 107
Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
                    + E + L N   + I +L+  F       LV EY   G+L   L K    +
Sbjct: 108 --------FREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERI 159
Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
                      +   +  +H       +HRDIK  NILLD     ++ADFG    L+A G
Sbjct: 160 PAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADG 216
Query: 691 GKDSTTTVIAGTYGYLAPEYAYS-------SKATTKCDVYSFGVVLMELITGRKPVEDD 742
              S   V  GT  YL+PE   +            +CD ++ GV   E+  G+ P   D
Sbjct: 217 TVRSLVAV--GTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD 273

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 81
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 82  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDH------ERMSYLLYQM 135
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 136 LCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRYY 191
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S G ++ E+I G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 33  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 82
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 83  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDH------ERMSYLLYQM 136
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 137 LCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRYY 192
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S G ++ E+I G
Sbjct: 193 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 222

>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 115/286 (40%), Gaps = 48/286 (16%)
Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKL----WSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
           K+ +  SG ++K      ++V VK L    WS R              +    E   L  
Sbjct: 17  KLNENHSGELWKGRWQGNDIV-VKVLKVRDWSTRKS------------RDFNEECPRLRI 63
Query: 589 IRHKNIVKL--YCYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQG 645
             H N++ +   C         L+  + P G+L++ LH+G    +D     K A   A+G
Sbjct: 64  FSHPNVLPVLGACQSPPAPHPTLITHWXPYGSLYNVLHEGTNFVVDQSQAVKFALDXARG 123
Query: 646 LAYLHHGLLSPIIHRD-IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            A+LH   L P+I R  + S ++ +D +   +++   +    Q+ G   +          
Sbjct: 124 XAFLH--TLEPLIPRHALNSRSVXIDEDXTARISXADVKFSFQSPGRXYAP--------A 173
Query: 705 YLAPEYAYSSKATTK---CDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
           ++APE        T     D +SF V+L EL+T   P    F D  N    +  KV   E
Sbjct: 174 WVAPEALQKKPEDTNRRSADXWSFAVLLWELVTREVP----FADLSNXE--IGXKV-ALE 226
Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           G+   +   +S         V ++   C ++ PA RP  + +V +L
Sbjct: 227 GLRPTIPPGISP-------HVSKLXKICXNEDPAKRPKFDXIVPIL 265

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 81
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 82  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDH------ERMSYLLYQM 135
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 136 LCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART----AGTSFMMTPYVVTRYY 191
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S G ++ E+I G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 81
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 82  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDH------ERMSYLLYQM 135
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 136 LCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRYY 191
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S G ++ E+I G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKVVN 81
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 82  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDH------ERMSYLLYQM 135
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 136 LVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART----AGTSFMMTPYVVTRYY 191
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S G ++ E+I G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 16/224 (7%)
Query: 514 FHRISFDQREIL--EAMTEKNKVGQGGSGTVYKIDLNSGE-VVAVKKLWSQRTKVSASDT 570
            HR     + +L  E +    ++G+G  G V+   L +   +VAVK         S  +T
Sbjct: 100 LHRAVPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVK---------SCRET 150
Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
               L      E   L    H NIV+L    +      +V E +  G+    L      L
Sbjct: 151 LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARL 210
Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
              T  ++    A G+ YL        IHRD+ + N L+      K++DFG+++  +A G
Sbjct: 211 RVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSRE-EADG 266
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
              ++  +      + APE     + +++ DV+SFG++L E  +
Sbjct: 267 VXAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFS 310

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKVVN 81
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 82  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDH------ERMSYLLYQM 135
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 136 LCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART----AGTSFMMTPYVVTRYY 191
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S G ++ E+I G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 126/274 (45%), Gaps = 32/274 (11%)
Query: 10  LPDFSPMQNL---RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKL-PESSIF 65
           + D  P++NL    RL+LS+N  +    LS   LT+L+ L+F    G ++  L P +++ 
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLNF----GNQVTDLKPLANLT 172
Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYY 125
            L +L I       +     + +  +T+L  L  T N I+   P  +G+L NL +L L  
Sbjct: 173 TLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 126 NQ-QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
           NQ +  GT    L +LT LTDLD++ N +S   P S   L KL  L+L  N +S    S 
Sbjct: 226 NQLKDIGT----LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISP 277
Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           +A  T LT L L +N L    P  +     L  L L  N +S   P  V S  KLQ    
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 333
Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP 278
             N  S V   SLA   N+      +N +    P
Sbjct: 334 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 115 LKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN 174
           L NL Q+  + N QL    P  L NLT+L D+ M+ N ++   P  +  L  L  L L+N
Sbjct: 62  LNNLTQIN-FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 175 NSLSGEISSV--IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSE--NKLSGPLP 230
           N    +I+ +  + N T L  L L  N+++     D+   S L  L      N+++   P
Sbjct: 117 N----QITDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLNFGNQVTDLKP 167
Query: 231 AKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSII 290
             + +   L+   +  N  S +    LA+  NL     +NN +    P GIL+    ++ 
Sbjct: 168 --LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILT----NLD 219
Query: 291 DLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP 326
           +LS N        T+ +  NL++L +  NQIS   P
Sbjct: 220 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 255

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKXVN 81
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 82  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLXQVIQMELDH------ERMSYLLYQ 134
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 135 MLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLART----AGTSFMMTPYVVTRY 190
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 191 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 126/274 (45%), Gaps = 32/274 (11%)
Query: 10  LPDFSPMQNL---RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKL-PESSIF 65
           + D  P++NL    RL+LS+N  +    LS   LT+L+ L+F    G ++  L P +++ 
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLNF----GNQVTDLKPLANLT 172
Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYY 125
            L +L I       +     + +  +T+L  L  T N I+   P  +G+L NL +L L  
Sbjct: 173 TLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 126 NQ-QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
           NQ +  GT    L +LT LTDLD++ N +S   P S   L KL  L+L  N +S    S 
Sbjct: 226 NQLKDIGT----LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISP 277
Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           +A  T LT L L +N L    P  +     L  L L  N +S   P  V S  KLQ    
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 333
Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP 278
             N  S V   SLA   N+      +N +    P
Sbjct: 334 SNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 115 LKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN 174
           L NL Q+  + N QL    P  L NLT+L D+ M+ N ++   P  +  L  L  L L+N
Sbjct: 62  LNNLTQIN-FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 175 NSLSGEISSV--IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSE--NKLSGPLP 230
           N    +I+ +  + N T L  L L  N+++     D+   S L  L      N+++   P
Sbjct: 117 N----QITDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLNFGNQVTDLKP 167
Query: 231 AKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSII 290
             + +   L+   +  N  S +    LA+  NL     +NN +    P GIL+    ++ 
Sbjct: 168 --LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILT----NLD 219
Query: 291 DLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP 326
           +LS N        T+ +  NL++L +  NQIS   P
Sbjct: 220 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 255

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKXVN 81
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 82  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 134
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLART----AGTSFMMTPYVVTRY 190
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 191 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKXVN 81
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 82  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLXQVIQMELDH------ERMSYLLYQ 134
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLART----AGTSFMMTPYVVTRY 190
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 191 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 116 HIVRIVDVYENLYAGRKCLLIVXECLDGGELFSRIQDRGDQAFTEREASEIXKSIGEAIQ 175
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N+L   + +P    K+ DFG AK   +    +S TT     Y
Sbjct: 176 YLHS---INIAHRDVKPENLLY-TSKRPNAILKLTDFGFAKETTSH---NSLTTPCYTPY 228
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD +S GV+   L+ G  P   + G
Sbjct: 229 -YVAPEVLGPEKYDKSCDXWSLGVIXYILLCGYPPFYSNHG 268

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q+++ +      ++G G    V K  + ++G   A K +  ++++ S     + ++++
Sbjct: 5   FKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIER 64
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  + H N++ L+  + +    +L+ E +  G L+D L +    L       
Sbjct: 65  ----EVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQK-ESLSEEEATS 119
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N      K+ DFG+A  ++   G +
Sbjct: 120 FIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE--DGVE 174
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 175 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 224

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 28/210 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 34  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 83
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 84  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDH------ERMSYLLYQM 137
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G          T  Y
Sbjct: 138 LCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMVPFVVTRYY 193
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITG 735
            APE           D++S G ++ E+I G
Sbjct: 194 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 223

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q+++ +      ++G G    V K  + ++G   A K +  ++++ S     + ++++
Sbjct: 5   FKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIER 64
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  + H N++ L+  + +    +L+ E +  G L+D L +    L       
Sbjct: 65  ----EVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQK-ESLSEEEATS 119
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N      K+ DFG+A  ++   G +
Sbjct: 120 FIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE--DGVE 174
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 175 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 224

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 29/228 (12%)
Query: 521 QREILEAMTEKNKVGQGGSGTV----YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           QRE +E       +G+G  G V    Y    N    VA+K       K   SD+    + 
Sbjct: 8   QRERIEL---GRCIGEGQFGDVHQGIYMSPENPAMAVAIKT-----CKNCTSDS----VR 55
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    E  T+    H +IVKL    +      ++ E    G L   L      LD  +  
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKFSLDLASLI 114
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
             A+ ++  LAYL        +HRDI + N+L+  N   K+ DFG+++ ++     DST 
Sbjct: 115 LYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME-----DSTX 166
Query: 697 TVIAG---TYGYLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVE 740
              +       ++APE     + T+  DV+ FGV + E L+ G KP +
Sbjct: 167 XKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 214

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 16/224 (7%)
Query: 514 FHRISFDQREIL--EAMTEKNKVGQGGSGTVYKIDLNSGE-VVAVKKLWSQRTKVSASDT 570
            HR     + +L  E +    ++G+G  G V+   L +   +VAVK         S  +T
Sbjct: 100 LHRAVPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVK---------SCRET 150
Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
               L      E   L    H NIV+L    +      +V E +  G+    L      L
Sbjct: 151 LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARL 210
Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
              T  ++    A G+ YL        IHRD+ + N L+      K++DFG+++  +A G
Sbjct: 211 RVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSRE-EADG 266
Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
              ++  +      + APE     + +++ DV+SFG++L E  +
Sbjct: 267 VYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFS 310

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 81
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 82  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 134
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 190
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 191 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 33  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 82
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 83  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 135
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 136 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 191
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 192 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 223

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 25  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 74
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 75  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 127
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 128 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 183
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 184 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 215

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 31  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 80
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 81  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 133
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 134 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 189
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 190 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 221

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 81
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 82  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLXQVIQMELDH------ERMSYLLYQ 134
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 135 MLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLART----AGTSFMMTPYVVTRY 190
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 191 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q+++ +      ++G G    V K  + ++G   A K +  ++++ S     + ++++
Sbjct: 5   FKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIER 64
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  + H N++ L+  + +    +L+ E +  G L+D L +    L       
Sbjct: 65  ----EVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQK-ESLSEEEATS 119
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N      K+ DFG+A  ++   G +
Sbjct: 120 FIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE--DGVE 174
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 175 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 224

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 26  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 75
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 76  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 128
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 129 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 184
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 185 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 216

>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase Domain Phosphorylated On Ser172 Length = 319

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 35/237 (14%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +GQG +  V++     +G++ A+K        +S      +Q+      E E L  + HK
Sbjct: 17  LGQGATANVFRGRHKKTGDLFAIKVF----NNISFLRPVDVQM-----REFEVLKKLNHK 67
Query: 593 NIVKLYCY--FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAY 648
           NIVKL+     ++    +L+ E+ P G+L+  L +       P    +     V  G+ +
Sbjct: 68  NIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNH 127
Query: 649 LHHGLLSPIIHRDIKSTNILL----DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           L     + I+HR+IK  NI+     D     K+ DFG A+ L+     D     + GT  
Sbjct: 128 LRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE----DDEQFVXLYGTEE 180
Query: 705 YLAPEY--------AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG--DNKNIIY 751
           YL P+          +  K     D++S GV      TG  P     G   NK ++Y
Sbjct: 181 YLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMY 237

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 33  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 82
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 83  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 135
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 136 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 191
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 192 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 223

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q+++ +      ++G G    V K  + ++G   A K +  ++++ S     + ++++
Sbjct: 5   FKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIER 64
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  + H N++ L+  + +    +L+ E +  G L+D L +    L       
Sbjct: 65  ----EVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQK-ESLSEEEATS 119
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N      K+ DFG+A  ++   G +
Sbjct: 120 FIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE--DGVE 174
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 175 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 224

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 25  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 74
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 75  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLXQVIQMELDH------ERMSYLLYQ 127
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 128 MLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLART----AGTSFMMTPYVVTRY 183
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 184 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 215

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 593 NIVKLYCYFSSLY----CNLLVYEYMPNGNLWDALH-KGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   + +LY    C L+V E +  G L+  +  +G          +I   + + + 
Sbjct: 70  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 129
Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH      I HRD+K  N LL  + +P    K+ DFG AK   +    +S T      Y
Sbjct: 130 YLHS---INIAHRDVKPEN-LLYTSKRPNAILKLTDFGFAKETTSH---NSLTEPCYTPY 182
Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
            Y+APE     K    CD++S GV++  L+ G  P   + G
Sbjct: 183 -YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 222

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 26  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 75
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 76  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 128
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 129 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 184
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 185 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 216

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 32  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 81
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 82  HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 134
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 190
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 191 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           I   +A+ + +LH   L   +HRD+K +NI   ++   KV DFG+   +     + +  T
Sbjct: 123 IFLQIAEAVEFLHSKGL---MHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLT 179
Query: 698 VI---------AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
            +          GT  Y++PE  + +  + K D++S G++L EL                
Sbjct: 180 PMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFEL---------------- 223
Query: 749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
            +Y  S +++    + +V + K    F  +      +     S SP  RP   E + ++ 
Sbjct: 224 -LYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERP---EAINIIE 279
Query: 809 EADPCRFESCKFPNKS 824
            A    FE   FP K+
Sbjct: 280 NA---VFEDLDFPGKT 292

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG G  G+V    D    + VAVKKL        +     L   +    E+  L +++H+
Sbjct: 28  VGSGAYGSVCSAYDARLRQKVAVKKL--------SRPFQSLIHARRTYRELRLLKHLKHE 79
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLAYL 649
           N++ L   F+         E      L  A    +V     +   + F V Q   GL Y+
Sbjct: 80  NVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYI 139
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H    + IIHRD+K +N+ ++ + + ++ DFG+A+  QA    D   T    T  Y APE
Sbjct: 140 HS---AGIIHRDLKPSNVAVNEDCELRILDFGLAR--QA----DEEMTGYVATRWYRAPE 190
Query: 710 YAYSSKATTK-CDVYSFGVVLMELITGR 736
              +     +  D++S G ++ EL+ G+
Sbjct: 191 IMLNWMHYNQTVDIWSVGCIMAELLQGK 218

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 20/235 (8%)
Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q+++ +      ++G G    V K  + ++G   A K +  ++++ S     + ++++
Sbjct: 5   FKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIER 64
Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
               EV  L  + H N++ L+  + +    +L+ E +  G L+D L +    L       
Sbjct: 65  ----EVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQK-ESLSEEEATS 119
Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGKD 693
               +  G+ YLH      I H D+K  NI LLD N      K+ DFG+A  ++   G +
Sbjct: 120 FIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE--DGVE 174
Query: 694 STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
                I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 175 FKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 224

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG G  G+V    D    + VAVKKL        +     L   +    E+  L +++H+
Sbjct: 36  VGSGAYGSVCSAYDARLRQKVAVKKL--------SRPFQSLIHARRTYRELRLLKHLKHE 87
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLAYL 649
           N++ L   F+         E      L  A    +V     +   + F V Q   GL Y+
Sbjct: 88  NVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYI 147
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H    + IIHRD+K +N+ ++ + + ++ DFG+A+  QA    D   T    T  Y APE
Sbjct: 148 HS---AGIIHRDLKPSNVAVNEDSELRILDFGLAR--QA----DEEMTGYVATRWYRAPE 198
Query: 710 YAYSSKATTK-CDVYSFGVVLMELITGR 736
              +     +  D++S G ++ EL+ G+
Sbjct: 199 IMLNWMHYNQTVDIWSVGCIMAELLQGK 226

>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In Complex With Adp Length = 432

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 41/237 (17%)
Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           K+ +G G  GT+    +     VAVK++  +    +  +   L+             +  
Sbjct: 29  KDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLR------------ESDE 76
Query: 591 HKNIVKLYC--------YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
           H N+++ +C        Y +   C   + EY+      D  H GL  +       +    
Sbjct: 77  HPNVIRYFCTEKDRQFQYIAIELCAATLQEYVEQK---DFAHLGLEPI------TLLQQT 127
Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDV-----NYQPKVADFGIAKVLQARGGKDSTTT 697
             GLA+LH      I+HRD+K  NIL+ +       +  ++DFG+ K L       S  +
Sbjct: 128 TSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRS 184
Query: 698 VIAGTYGYLAPEY---AYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII 750
            + GT G++APE          T   D++S G V   +I+ G  P         NI+
Sbjct: 185 GVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANIL 241

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 20/236 (8%)
Query: 518 SFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           +F Q+++ +      ++G G    V K  + ++G   A K +  ++++ S     + +++
Sbjct: 4   TFKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIE 63
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    EV  L  + H NI+ L+  + +    +L+ E +  G L+D L +    L      
Sbjct: 64  R----EVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQK-ESLSEEEAT 118
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNI-LLDVNY---QPKVADFGIAKVLQARGGK 692
                +  G+ YLH      I H D+K  NI LLD N      K+ DFG+A  ++   G 
Sbjct: 119 SFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE--DGV 173
Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN 748
           +     I GT  ++APE         + D++S GV+   L++G  P     GD K 
Sbjct: 174 EFKN--IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF---LGDTKQ 224

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV-IA 700
           V+ G+ YL        +HR++ + N+LL   +  K++DFG++K L   G  DS  T   A
Sbjct: 445 VSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKAL---GADDSYYTARSA 498
Query: 701 GTY--GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKP 738
           G +   + APE     K +++ DV+S+GV + E ++ G+KP
Sbjct: 499 GKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKP 539

>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 35/237 (14%)
Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +GQG +  V++     +G++ A+K        +S      +Q+      E E L  + HK
Sbjct: 17  LGQGATANVFRGRHKKTGDLFAIKVF----NNISFLRPVDVQM-----REFEVLKKLNHK 67
Query: 593 NIVKLYCY--FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF--GVAQGLAY 648
           NIVKL+     ++    +L+ E+ P G+L+  L +       P    +     V  G+ +
Sbjct: 68  NIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNH 127
Query: 649 LHHGLLSPIIHRDIKSTNILL----DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           L     + I+HR+IK  NI+     D     K+ DFG A+ L+     D     + GT  
Sbjct: 128 LRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE----DDEQFVSLYGTEE 180
Query: 705 YLAPEYA--------YSSKATTKCDVYSFGVVLMELITGRKPVEDDFG--DNKNIIY 751
           YL P+          +  K     D++S GV      TG  P     G   NK ++Y
Sbjct: 181 YLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMY 237

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY---QPKVADFGIAKVLQARGGKDSTTTV 698
           + +G+ YLH    + I+H D+K  NILL   Y     K+ DFG+++ +    G       
Sbjct: 140 ILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI----GHACELRE 192
Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS-IKV 757
           I GT  YLAPE       TT  D+++ G++   L+T   P   +  DN+     +S + V
Sbjct: 193 IMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE--DNQETYLNISQVNV 250
Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT 799
           D  E     +  +L+  F    IQ L +      K+P  RPT
Sbjct: 251 DYSEETFSSV-SQLATDF----IQSLLV------KNPEKRPT 281

>pdb|2H34|A Chain A, Apoenzyme Crystal Structure Of The Tuberculosis SerineTHREONINE Kinase, Pkne Length = 309

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 659 HRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG---YLAPEYAYSSK 715
           HRD+K  NIL+  +    + DFGIA         D   T +  T G   Y APE    S 
Sbjct: 157 HRDVKPENILVSADDFAYLVDFGIASAT-----TDEKLTQLGNTVGTLYYXAPERFSESH 211
Query: 716 ATTKCDVYSFGVVLMELITGRKPVEDD 742
           AT + D+Y+   VL E +TG  P + D
Sbjct: 212 ATYRADIYALTCVLYECLTGSPPYQGD 238

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+GQG  G V+K     +G+ VA+KK+  +  K     T        L+ E++ L  ++H
Sbjct: 25  KIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPIT-------ALR-EIKILQLLKH 76
Query: 592 KNIVKLY--CYFSSLYCN------LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
           +N+V L   C   +   N       LV+++  + +L   L   LV        ++   + 
Sbjct: 77  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLL 135
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ-ARGGKDSTTTVIAGT 702
            GL Y+H    + I+HRD+K+ N+L+  +   K+ADFG+A+    A+  + +       T
Sbjct: 136 NGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVT 192
Query: 703 YGYLAPEYAYSSKAT-TKCDVYSFGVVLMELITGRKPV 739
             Y  PE     +      D++  G ++ E+ T R P+
Sbjct: 193 LWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT-RSPI 229

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 534 VGQGGSGTV-YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           VG G  G+V    D    + VAVKKL        +     L   +    E+  L +++H+
Sbjct: 36  VGSGAYGSVCSAYDARLRQKVAVKKL--------SRPFQSLIHARRTYRELRLLKHLKHE 87
Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLAYL 649
           N++ L   F+         E      L  A    +V     +   + F V Q   GL Y+
Sbjct: 88  NVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKSQALSDEHVQFLVYQLLRGLKYI 147
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
           H    + IIHRD+K +N+ ++ + + ++ DFG+A+  QA    D   T    T  Y APE
Sbjct: 148 HS---AGIIHRDLKPSNVAVNEDSELRILDFGLAR--QA----DEEMTGYVATRWYRAPE 198
Query: 710 YAYSSKATTK-CDVYSFGVVLMELITGR 736
              +     +  D++S G ++ EL+ G+
Sbjct: 199 IMLNWMHYNQTVDIWSVGCIMAELLQGK 226

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 70  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 119
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 120 HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 172
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 173 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 228
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 229 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L+    VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 70  IGSGAQGIVCAAYDAVLDRN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 119
Query: 591 HKNIVKLYCYFS------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           HKNI+ L   F+            LV E M + NL   +   L H       ++++ + Q
Sbjct: 120 HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDH------ERMSYLLYQ 172
Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  
Sbjct: 173 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRY 228
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           Y APE           D++S G ++ E++  +
Sbjct: 229 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 112/290 (38%), Gaps = 48/290 (16%)
Query: 534 VGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G G  G VY+  ++      S   VAVK L         S+ D+L        E   + 
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTL-----PEVCSEQDELDF----LMEALIIS 129
Query: 588 NIRHKNIVKLYCYFSSLYC--NLLVYEYMPNGNLWDALHKGLVHLDWPTRH------KIA 639
              H+NIV+  C   SL      ++ E M  G+L   L +       P+         +A
Sbjct: 130 KFNHQNIVR--CIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 187
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---NYQPKVADFGIAKVLQARGGKDSTT 696
             +A G  YL        IHRDI + N LL         K+ DFG+A+ +  R G     
Sbjct: 188 RDIACGCQYLEENHF---IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIY-RAGYYRKG 243
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSI 755
                   ++ PE       T+K D +SFGV+L E+ + G  P       N+ ++ +V  
Sbjct: 244 GCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK--SNQEVLEFV-- 299
Query: 756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
              T  G M+   K   G        V RI  +C    P  RP    +++
Sbjct: 300 ---TSGGRMDP-PKNCPGP-------VYRIMTQCWQHQPEDRPNFAIILE 338

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 112/290 (38%), Gaps = 48/290 (16%)
Query: 534 VGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +G G  G VY+  ++      S   VAVK L         S+ D+L        E   + 
Sbjct: 56  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTL-----PEVCSEQDELDF----LMEALIIS 106
Query: 588 NIRHKNIVKLYCYFSSLYC--NLLVYEYMPNGNLWDALHKGLVHLDWPTRH------KIA 639
              H+NIV+  C   SL      ++ E M  G+L   L +       P+         +A
Sbjct: 107 KFNHQNIVR--CIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 164
Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---NYQPKVADFGIAKVLQARGGKDSTT 696
             +A G  YL        IHRDI + N LL         K+ DFG+A+ +  R G     
Sbjct: 165 RDIACGCQYLEENHF---IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIY-RAGYYRKG 220
Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSI 755
                   ++ PE       T+K D +SFGV+L E+ + G  P       N+ ++ +V  
Sbjct: 221 GCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK--SNQEVLEFV-- 276
Query: 756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
              T  G M+   K   G        V RI  +C    P  RP    +++
Sbjct: 277 ---TSGGRMDP-PKNCPGP-------VYRIMTQCWQHQPEDRPNFAIILE 315

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 33/230 (14%)
Query: 521 QREILEAMTEKNKVGQGGSGTV----YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           QRE +E       +G+G  G V    Y    N    VA+K       K   SD+    + 
Sbjct: 8   QRERIEL---GRCIGEGQFGDVHQGIYMSPENPAMAVAIKT-----CKNCTSDS----VR 55
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    E  T+    H +IVKL    +      ++ E    G L   L      LD  +  
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYSLDLASLI 114
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
             A+ ++  LAYL        +HRDI + N+L+  N   K+ DFG+++ ++        +
Sbjct: 115 LYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME-------DS 164
Query: 697 TVIAGTYG-----YLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVE 740
           T    + G     ++APE     + T+  DV+ FGV + E L+ G KP +
Sbjct: 165 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 214

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+GQG  G V+K     +G+ VA+KK+  +  K     T        L+ E++ L  ++H
Sbjct: 25  KIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPIT-------ALR-EIKILQLLKH 76
Query: 592 KNIVKLY--CYFSSLYCN------LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
           +N+V L   C   +   N       LV+++  + +L   L   LV        ++   + 
Sbjct: 77  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLL 135
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ-ARGGKDSTTTVIAGT 702
            GL Y+H    + I+HRD+K+ N+L+  +   K+ADFG+A+    A+  + +       T
Sbjct: 136 NGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVT 192
Query: 703 YGYLAPEYAYSSKAT-TKCDVYSFGVVLMELITGRKPV 739
             Y  PE     +      D++  G ++ E+ T R P+
Sbjct: 193 LWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT-RSPI 229

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+GQG  G V+K     +G+ VA+KK+  +  K     T        L+ E++ L  ++H
Sbjct: 24  KIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPIT-------ALR-EIKILQLLKH 75
Query: 592 KNIVKLY--CYFSSLYCN------LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
           +N+V L   C   +   N       LV+++  + +L   L   LV        ++   + 
Sbjct: 76  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLL 134
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ-ARGGKDSTTTVIAGT 702
            GL Y+H    + I+HRD+K+ N+L+  +   K+ADFG+A+    A+  + +       T
Sbjct: 135 NGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVT 191
Query: 703 YGYLAPEYAYSSKAT-TKCDVYSFGVVLMELITGRKPV 739
             Y  PE     +      D++  G ++ E+ T R P+
Sbjct: 192 LWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT-RSPI 228

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+GQG  G V+K     +G+ VA+KK+  +  K     T        L+ E++ L  ++H
Sbjct: 25  KIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPIT-------ALR-EIKILQLLKH 76
Query: 592 KNIVKLY--CYFSSLYCN------LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
           +N+V L   C   +   N       LV+++  + +L   L   LV        ++   + 
Sbjct: 77  ENVVNLIEICRTKASPYNRCKASIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLL 135
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ-ARGGKDSTTTVIAGT 702
            GL Y+H    + I+HRD+K+ N+L+  +   K+ADFG+A+    A+  + +       T
Sbjct: 136 NGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVT 192
Query: 703 YGYLAPEYAYSSKAT-TKCDVYSFGVVLMELITGRKPV 739
             Y  PE     +      D++  G ++ E+ T R P+
Sbjct: 193 LWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT-RSPI 229

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 52/258 (20%)
Query: 507 FPYDVK-SFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTK 564
           + YD+K  F R + +  ++L +       G+  + T Y I      + VAVK L   + K
Sbjct: 34  YEYDLKWEFPRENLEFGKVLGS----GAFGKVMNATAYGISKTGVSIQVAVKML---KEK 86
Query: 565 VSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSS-LYCNLLVYEYMPNGNLWD 621
             +S+ + L  +  + T+   LG+  H+NIV L   C  S  +Y   L++EY   G+L +
Sbjct: 87  ADSSEREALMSELKMMTQ---LGS--HENIVNLLGACTLSGPIY---LIFEYCCYGDLLN 138
Query: 622 ALHKGLV-----HLDWPTRHKI-----------------AFGVAQGLAYLHHGLLSPIIH 659
            L           +++  + ++                 A+ VA+G+ +L        +H
Sbjct: 139 YLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVH 195
Query: 660 RDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---YGYLAPEYAYSSKA 716
           RD+ + N+L+      K+ DFG+A+ + +    DS   V         ++APE  +    
Sbjct: 196 RDLAARNVLVTHGKVVKICDFGLARDIMS----DSNYVVRGNARLPVKWMAPESLFEGIY 251
Query: 717 TTKCDVYSFGVVLMELIT 734
           T K DV+S+G++L E+ +
Sbjct: 252 TIKSDVWSYGILLWEIFS 269

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGE----VVAVKKLWSQRTKVSASDTDQLQLD 576
           QRE +E       +G+G  G V++    S E     VA+K       K   SD+    + 
Sbjct: 8   QRERIEL---GRCIGEGQFGDVHQGIYMSPENPALAVAIKT-----CKNCTSDS----VR 55
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    E  T+    H +IVKL    +      ++ E    G L   L      LD  +  
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYSLDLASLI 114
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
             A+ ++  LAYL        +HRDI + N+L+  N   K+ DFG+++ ++        +
Sbjct: 115 LYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME-------DS 164
Query: 697 TVIAGTYG-----YLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVE 740
           T    + G     ++APE     + T+  DV+ FGV + E L+ G KP +
Sbjct: 165 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 214

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGE----VVAVKKLWSQRTKVSASDTDQLQLD 576
           QRE +E       +G+G  G V++    S E     VA+K       K   SD+    + 
Sbjct: 36  QRERIEL---GRCIGEGQFGDVHQGIYMSPENPALAVAIKT-----CKNCTSDS----VR 83
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    E  T+    H +IVKL    +      ++ E    G L   L      LD  +  
Sbjct: 84  EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYSLDLASLI 142
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
             A+ ++  LAYL        +HRDI + N+L+  N   K+ DFG+++ ++        +
Sbjct: 143 LYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME-------DS 192
Query: 697 TVIAGTYG-----YLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVE 740
           T    + G     ++APE     + T+  DV+ FGV + E L+ G KP +
Sbjct: 193 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 242

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 534 VGQGGSGTV----YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+G  G V    Y    N    VA+K       K   SD+    + +    E  T+   
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKT-----CKNCTSDS----VREKFLQEALTMRQF 448
Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
            H +IVKL    +      ++ E    G L   L      LD  +    A+ ++  LAYL
Sbjct: 449 DHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYL 507
Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG----- 704
                   +HRDI + N+L+  N   K+ DFG+++ ++        +T    + G     
Sbjct: 508 ES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME-------DSTYYKASKGKLPIK 557
Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVE 740
           ++APE     + T+  DV+ FGV + E L+ G KP +
Sbjct: 558 WMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 594

>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC Length = 405

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 38/235 (16%)
Query: 521 QREILEAMTEKN--KVGQGGSGTVYKIDLNSGEV---VAVKKLWSQRTKVSASDTDQLQL 575
           +RE +E + E    KVG+G  G VYK     G+     A+K++      +SA        
Sbjct: 14  ERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSAC------- 66
Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN--LLVYEYMPNGNLWDAL--------HK 625
                 E+  L  ++H N++ L   F S       L+++Y  + +LW  +        +K
Sbjct: 67  -----REIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANK 120
Query: 626 GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-----KVADF 680
             V L       + + +  G+ YLH      ++HRD+K  NIL+ +   P     K+AD 
Sbjct: 121 KPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILV-MGEGPERGRVKIADM 176
Query: 681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKC-DVYSFGVVLMELIT 734
           G A++  +     +    +  T+ Y APE    ++  TK  D+++ G +  EL+T
Sbjct: 177 GFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLT 231

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGE----VVAVKKLWSQRTKVSASDTDQLQLD 576
           QRE +E       +G+G  G V++    S E     VA+K       K   SD+    + 
Sbjct: 11  QRERIEL---GRCIGEGQFGDVHQGIYMSPENPALAVAIKT-----CKNCTSDS----VR 58
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    E  T+    H +IVKL    +      ++ E    G L   L      LD  +  
Sbjct: 59  EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYSLDLASLI 117
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
             A+ ++  LAYL        +HRDI + N+L+  N   K+ DFG+++ ++        +
Sbjct: 118 LYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME-------DS 167
Query: 697 TVIAGTYG-----YLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVE 740
           T    + G     ++APE     + T+  DV+ FGV + E L+ G KP +
Sbjct: 168 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 217

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 28/211 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 37  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 86
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 87  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDH------ERMSYLLYQM 140
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 141 LCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRYY 196
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
            APE           D++S G ++ E++  +
Sbjct: 197 RAPEVILGMGYKENVDLWSVGCIMGEMVCHK 227

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGE----VVAVKKLWSQRTKVSASDTDQLQLD 576
           QRE +E       +G+G  G V++    S E     VA+K       K   SD+    + 
Sbjct: 5   QRERIEL---GRCIGEGQFGDVHQGIYMSPENPALAVAIKT-----CKNCTSDS----VR 52
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    E  T+    H +IVKL    +      ++ E    G L   L      LD  +  
Sbjct: 53  EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYSLDLASLI 111
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
             A+ ++  LAYL        +HRDI + N+L+  N   K+ DFG+++ ++        +
Sbjct: 112 LYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME-------DS 161
Query: 697 TVIAGTYG-----YLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVE 740
           T    + G     ++APE     + T+  DV+ FGV + E L+ G KP +
Sbjct: 162 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 211

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGE----VVAVKKLWSQRTKVSASDTDQLQLD 576
           QRE +E       +G+G  G V++    S E     VA+K       K   SD+    + 
Sbjct: 10  QRERIEL---GRCIGEGQFGDVHQGIYMSPENPALAVAIKT-----CKNCTSDS----VR 57
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    E  T+    H +IVKL    +      ++ E    G L   L      LD  +  
Sbjct: 58  EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYSLDLASLI 116
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
             A+ ++  LAYL        +HRDI + N+L+  N   K+ DFG+++ ++        +
Sbjct: 117 LYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME-------DS 166
Query: 697 TVIAGTYG-----YLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVE 740
           T    + G     ++APE     + T+  DV+ FGV + E L+ G KP +
Sbjct: 167 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 216

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 26/215 (12%)
Query: 534 VGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           +G+G  G+V + +L   +  ++K        +   ++ Q ++++ L +E   + +  H N
Sbjct: 42  LGEGEFGSVMEGNLKQEDGTSLK---VAVKTMKLDNSSQREIEEFL-SEAACMKDFSHPN 97
Query: 594 IVKLYCYFSSLYCN-----LLVYEYMPNGNL-----WDALHKGLVHLDWPTRHKIAFGVA 643
           +++L      +        +++  +M  G+L     +  L  G  H+   T  K    +A
Sbjct: 98  VIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIA 157
Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA----RGGKDSTTTVI 699
            G+ YL +      +HRD+ + N +L  +    VADFG++K + +    R G+ +   V 
Sbjct: 158 LGMEYLSN---RNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPV- 213
Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
                ++A E       T+K DV++FGV + E+ T
Sbjct: 214 ----KWIAIESLADRVYTSKSDVWAFGVTMWEIAT 244

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGE----VVAVKKLWSQRTKVSASDTDQLQLD 576
           QRE +E       +G+G  G V++    S E     VA+K       K   SD+    + 
Sbjct: 13  QRERIEL---GRCIGEGQFGDVHQGIYMSPENPALAVAIKT-----CKNCTSDS----VR 60
Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    E  T+    H +IVKL    +      ++ E    G L   L      LD  +  
Sbjct: 61  EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYSLDLASLI 119
Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
             A+ ++  LAYL        +HRDI + N+L+  N   K+ DFG+++ ++        +
Sbjct: 120 LYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME-------DS 169
Query: 697 TVIAGTYG-----YLAPEYAYSSKATTKCDVYSFGVVLME-LITGRKPVE 740
           T    + G     ++APE     + T+  DV+ FGV + E L+ G KP +
Sbjct: 170 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 219

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 28/211 (13%)
Query: 534 VGQGGSGTV---YKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V   Y   L     VA+KKL       S    +Q    +  + E+  +  + 
Sbjct: 26  IGSGAQGIVCAAYDAILERN--VAIKKL-------SRPFQNQTHAKRAYR-ELVLMKCVN 75
Query: 591 HKNIVKLYCYFS-----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           HKNI+ L   F+       + ++ +   + + NL   +   L H       ++++ + Q 
Sbjct: 76  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDH------ERMSYLLYQM 129
Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L  + H   + IIHRD+K +NI++  +   K+ DFG+A+      G     T    T  Y
Sbjct: 130 LCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART----AGTSFMMTPYVVTRYY 185
Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
            APE           D++S G ++ E++  +
Sbjct: 186 RAPEVILGMGYKENVDLWSVGCIMGEMVCHK 216

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 27/211 (12%)
Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+G+G  G VYK ID  + E VA+K++  +  +     T           EV  L  ++
Sbjct: 40  TKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGT--------AIREVSLLKELQ 91
Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR--HKIAFGVAQGLAY 648
           H+NI++L       +   L++EY  N +L   + K   + D   R      + +  G+ +
Sbjct: 92  HRNIIELKSVIHHNHRLHLIFEYAEN-DLKKYMDK---NPDVSMRVIKSFLYQLINGVNF 147
Query: 649 LHHGLLSPIIHRDIKSTNILL---DVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTY 703
            H       +HRD+K  N+LL   D +  P  K+ DFG+A+       +  T  +I  T 
Sbjct: 148 CHS---RRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAF-GIPIRQFTHEII--TL 201
Query: 704 GYLAPEYAYSSKA-TTKCDVYSFGVVLMELI 733
            Y  PE    S+  +T  D++S   +  E++
Sbjct: 202 WYRPPEILLGSRHYSTSVDIWSIACIWAEML 232
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	840
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-119
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-118
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-108
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-105
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-81
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-108
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-105
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-103
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-80
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-70
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-50
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	6e-68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	4e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-26
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-64
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-62
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-62
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-61
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-58
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-58
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	4e-58
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-57
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-56
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-55
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-47
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-12
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	6e-39
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-17
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	5e-38
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	8e-38
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-37
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-37
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-37
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-37
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	3e-37
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-37
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	4e-37
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	5e-37
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	6e-37
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-36
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-36
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	3e-36
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-29
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	5e-36
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	7e-36
3ork_A	311	Serine/threonine protein kinase; structural genomi	7e-36
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	8e-36
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-34
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-34
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-34
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-34
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	3e-34
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-34
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	5e-34
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	5e-34
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	7e-34
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	8e-34
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-34
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-33
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-33
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-33
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-33
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-33
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-33
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-33
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-33
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-33
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-33
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	3e-33
3fme_A	290	Dual specificity mitogen-activated protein kinase;	3e-33
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	4e-33
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	5e-33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-33
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	6e-33
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-32
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-32
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-32
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-32
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-32
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-32
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-32
3pls_A	298	Macrophage-stimulating protein receptor; protein k	4e-32
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	6e-32
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-32
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-32
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	7e-32
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	8e-32
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	8e-32
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-31
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-31
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-31
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-31
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-28
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-31
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-31
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	5e-31
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-31
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-31
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	9e-31
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-30
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-30
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-30
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-30
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	4e-30
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	6e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-19
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	8e-30
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-29
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-29
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-29
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	3e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	7e-29
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-28
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-28
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-28
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	3e-28
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-28
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-28
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	7e-28
4aoj_A	329	High affinity nerve growth factor receptor; transf	8e-28
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	9e-28
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-27
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-27
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-27
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-27
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-27
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	3e-27
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	3e-27
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	3e-27
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-27
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	6e-27
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	8e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-24
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-26
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-26
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-26
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-16
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	4e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-22
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	7e-26
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	8e-26
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	9e-26
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	9e-26
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-25
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	3e-25
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-25
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	5e-25
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-24
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-24
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	1e-24
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-15
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	4e-24
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	5e-24
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	5e-24
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	6e-24
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	7e-24
3bhy_A	283	Death-associated protein kinase 3; death associate	8e-24
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	8e-24
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-23
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-23
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-17
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-23
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-23
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-23
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	6e-23
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	7e-23
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-22
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-22
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-22
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-22
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-22
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-22
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	3e-22
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
3uqc_A	286	Probable conserved transmembrane protein; structur	3e-22
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	4e-22
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	4e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	7e-22
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-21
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	2e-21
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-21
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-21
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	3e-21
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-21
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-21
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	3e-21
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	3e-21
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-21
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	5e-21
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	5e-21
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	6e-21
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	6e-21
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	7e-21
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	7e-21
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	8e-21
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-20
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-11
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	4e-20
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-20
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	6e-20
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-19
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	3e-19
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-19
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	4e-19
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	4e-19
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	4e-19
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	5e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-18
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-18
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-18
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	3e-18
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	4e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	9e-18
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-17
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	3e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-12
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-16
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	2e-16
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	3e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	9e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	2e-15
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	2e-15
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	3e-15
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	3e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-11
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	3e-14
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	4e-14
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	4e-14
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	8e-11
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	3e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	9e-10
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	2e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	6e-09
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	7e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	3e-08
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	9e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	7e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  378 bits (974), Expect = e-119
 Identities = 122/428 (28%), Positives = 203/428 (47%), Gaps = 19/428 (4%)

Query: 6   LTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKL-WKLPESS 63
           L+G      S    L+ L++S+N F G  P     L +L+ LS  EN   K   ++P+  
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN---KFTGEIPDFL 289

Query: 64  IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPE-IGLLKNLRQLE 122
                 L  + L+    +G +P   G+ + L  L L+ N  +G +P + +  ++ L+ L+
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 123 LYYNQQLAGTIPEELGNLT-ELTDLDMSVNHLSGKIPESI--LRLPKLRVLQLYNNSLSG 179
           L +N+  +G +PE L NL+  L  LD+S N+ SG I  ++       L+ L L NN  +G
Sbjct: 350 LSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408

Query: 180 EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKL 239
           +I   ++N + L  L L  N L+G +P  LG  S L  L L  N L G +P ++     L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 240 QYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG 299
           +  ++  N  +G +P  L+ C NL    +SNN L G IP+ I  L +++I+ LS NSFSG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 300 PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKL 359
            I   +G+ R+L  L +  N  +G IP+     +      ++ N ++G     I N    
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAA----MFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 360 NLLMLQSN--KLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRL 416
                  N  +        L+ L + N  ++++ +  G+   +         ++ S N L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 417 SGPIPLSL 424
           SG IP  +
Sbjct: 645 SGYIPKEI 652

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  375 bits (966), Expect = e-118
 Identities = 143/435 (32%), Positives = 209/435 (48%), Gaps = 19/435 (4%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFP--LSVFNLTNLEVLSFNENPGFKLWK 58
           +S  ++ G++  F    +L  LDLS N  +G      S+ + + L+ L+ + N     + 
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN--TLDFP 141

Query: 59  LPESSIFRLTKLRIMVLATCALHGQIPASI---GNVTSLTDLELTGNFITGHIPPEIGLL 115
              S   +L  L ++ L+  ++ G              L  L ++GN I+G +   +   
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 199

Query: 116 KNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN 175
            NL  L++  N   +  IP  LG+ + L  LD+S N LSG    +I    +L++L + +N
Sbjct: 200 VNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 176 SLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDL-GQWSPLVVLDLSENKLSGPLPAKVC 234
              G I        +L  LSL +N  TGE+P  L G    L  LDLS N   G +P    
Sbjct: 258 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 235 SRGKLQYFLVLQNMFSGVLP-DSLARCKNLLRFRVSNNHLEGSIPEGILSL-PHVSIIDL 292
           S   L+   +  N FSG LP D+L + + L    +S N   G +PE + +L   +  +DL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 293 SYNSFSGPIANTVGN--ARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIP 350
           S N+FSGPI   +       L EL++Q N  +G IP  +     LV + LS N LSG IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 351 SGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLP-NSI 409
           S +G+L KL  L L  N L   IP  L  +K+L  L L  N LTG IP  L      N I
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 410 NFSNNRLSGPIPLSL 424
           + SNNRL+G IP  +
Sbjct: 496 SLSNNRLTGEIPKWI 510

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  348 bits (896), Expect = e-108
 Identities = 116/440 (26%), Positives = 187/440 (42%), Gaps = 24/440 (5%)

Query: 2   SFMYLTGTL----PDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLW 57
           S   L             +  L  L LSN+   G          +L  L  + N      
Sbjct: 58  SSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN-SLSGP 115

Query: 58  KLPESSIFRLTKLRIMVLATCALHGQIPASIG-NVTSLTDLELTGNFITGHIPPEI---G 113
               +S+   + L+ + +++  L      S G  + SL  L+L+ N I+G          
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175

Query: 114 LLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLY 173
               L+ L +  N +++G +   +     L  LD+S N+ S  IP  +     L+ L + 
Sbjct: 176 GCGELKHLAISGN-KISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDIS 231

Query: 174 NNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKV 233
            N LSG+ S  I+  T L +L++  N   G +P        L  L L+ENK +G +P  +
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFL 289

Query: 234 CSR-GKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIID 291
                 L    +  N F G +P     C  L    +S+N+  G +P   L  +  + ++D
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 292 LSYNSFSGPIANTVGNAR-NLSELFMQRNQISGFIPSEI--YRAISLVKIDLSDNLLSGP 348
           LS+N FSG +  ++ N   +L  L +  N  SG I   +      +L ++ L +N  +G 
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 349 IPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN- 407
           IP  + N  +L  L L  N L+ +IP+SL SL  L  L L  N+L G IP+ L   +   
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTL 468

Query: 408 -SINFSNNRLSGPIPLSLIK 426
            ++    N L+G IP  L  
Sbjct: 469 ETLILDFNDLTGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  340 bits (875), Expect = e-105
 Identities = 136/442 (30%), Positives = 207/442 (46%), Gaps = 37/442 (8%)

Query: 6   LTGTLPD--FSPMQNLRRLDLSNNLFTGQFPLSVFNLT-NLEVLSFNENPGFKLW-KLPE 61
            +G LP      M+ L+ LDLS N F+G+ P S+ NL+ +L  L  + N        +  
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN---NFSGPILP 386

Query: 62  S-SIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
           +        L+ + L      G+IP ++ N + L  L L+ N+++G IP  +G L  LR 
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           L+L+ N  L G IP+EL  +  L  L +  N L+G+IP  +     L  + L NN L+GE
Sbjct: 447 LKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           I   I     L +L L +NS +G +P +LG    L+ LDL+ N  +G +PA +      Q
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----Q 561

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNN--HLEGSIPEGILSLPHVSIIDLSYNSFS 298
              +  N  +G     +           + N    +G   E +  L   +  +++   + 
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 299 GPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKK 358
           G  + T  N  ++  L M  N +SG+IP EI     L  ++L  N +SG IP  +G+L+ 
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 359 LNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSG 418
           LN+L L SNKL+  IP ++S+L  L  +DLSNN L+G IPE           F       
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-----GQFETFPP----- 731

Query: 419 PIPLSLIKEGLVESFSGNPGLC 440
                         F  NPGLC
Sbjct: 732 ------------AKFLNNPGLC 741

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  291 bits (747), Expect = 1e-86
 Identities = 100/371 (26%), Positives = 165/371 (44%), Gaps = 19/371 (5%)

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYY 125
           ++T + +           + +S+ ++T L  L L+ + I G +        +L  L+L  
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSR 109

Query: 126 NQQLAGTIPE--ELGNLTELTDLDMSVNHLSGKIP-ESILRLPKLRVLQLYNNSLSGEIS 182
           N  L+G +     LG+ + L  L++S N L         L+L  L VL L  NS+SG   
Sbjct: 110 N-SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 183 SVIA---NSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKL 239
                      L  L++  N ++G+V   + +   L  LD+S N  S  +P  +     L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL 225

Query: 240 QYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG 299
           Q+  +  N  SG    +++ C  L    +S+N   G IP   L    +  + L+ N F+G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTG 283

Query: 300 PI-ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIP-SGIGNLK 357
            I     G    L+ L +  N   G +P        L  + LS N  SG +P   +  ++
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 358 KLNLLMLQSNKLNSSIPNSLSSLK-SLNVLDLSNNLLTGYIPESLCELLPNSINF---SN 413
            L +L L  N+ +  +P SL++L  SL  LDLS+N  +G I  +LC+   N++      N
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 414 NRLSGPIPLSL 424
           N  +G IP +L
Sbjct: 404 NGFTGKIPPTL 414

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  275 bits (706), Expect = 6e-81
 Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 20/353 (5%)

Query: 90  NVTSLTDLELTGNFIT---GHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDL 146
               +T ++L+   +      +   +  L  L  L L  +  + G++         LT L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HINGSVS-GFKCSASLTSL 105

Query: 147 DMSVNHLSGKIPE--SILRLPKLRVLQLYNNSLSGEIS-SVIANSTTLTMLSLYDNSLTG 203
           D+S N LSG +    S+     L+ L + +N+L      S      +L +L L  NS++G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 204 EVPQDL---GQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARC 260
                         L  L +S NK+SG +    C    L++  V  N FS  +P  L  C
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIP-FLGDC 222

Query: 261 KNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQ 320
             L    +S N L G     I +   + ++++S N F GPI       ++L  L +  N+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENK 280

Query: 321 ISGFIPSEIYRAI-SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP-NSLS 378
            +G IP  +  A  +L  +DLS N   G +P   G+   L  L L SN  +  +P ++L 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 379 SLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLSLIKEGL 429
            ++ L VLDLS N  +G +PESL  L  +  +++ S+N  SGPI  +L +   
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  335 bits (861), Expect = e-108
 Identities = 110/301 (36%), Positives = 171/301 (56%), Gaps = 24/301 (7%)

Query: 518 SFDQREILEAMT----EKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
            F  RE+  A +     KN +G+GG G VYK  L  G +VAVK+L          +    
Sbjct: 19  RFSLRELQVA-SDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRL---------KEERTQ 68

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH---KGLVHL 630
             +   +TEVE +    H+N+++L  +  +    LLVY YM NG++   L    +    L
Sbjct: 69  GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPL 128

Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
           DWP R +IA G A+GLAYLH      IIHRD+K+ NILLD  ++  V DFG+AK++    
Sbjct: 129 DWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDY-- 186

Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF---GDNK 747
                TT + GT G++APEY  + K++ K DV+ +GV+L+ELITG++  +       D+ 
Sbjct: 187 KDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDV 246

Query: 748 NIIYWVSIKVDTKEGIMEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL 806
            ++ WV   +  K+ +  ++D  L G++  +E+ Q++++A+ CT  SP  RP M+EVV++
Sbjct: 247 MLLDWVKGLLKEKK-LEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRM 305

Query: 807 L 807
           L
Sbjct: 306 L 306

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  326 bits (839), Expect = e-105
 Identities = 108/335 (32%), Positives = 159/335 (47%), Gaps = 38/335 (11%)

Query: 490 SKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMT----EKNKVGQGGSGTVYKI 545
           SK    T       SS +    +S +R+       LE  T     K  +G G  G VYK 
Sbjct: 3   SKYSKATNSINDALSSSYLVPFES-YRVPLVD---LEEATNNFDHKFLIGHGVFGKVYKG 58

Query: 546 DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY 605
            L  G  VA+K+             +  Q  +  +TE+ETL   RH ++V L  +     
Sbjct: 59  VLRDGAKVALKRR----------TPESSQGIEEFETEIETLSFCRHPHLVSLIGF----- 103

Query: 606 CN-----LLVYEYMPNGNLWDALH---KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPI 657
           C+     +L+Y+YM NGNL   L+      + + W  R +I  G A+GL YLH      I
Sbjct: 104 CDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AI 160

Query: 658 IHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKAT 717
           IHRD+KS NILLD N+ PK+ DFGI+K       +   +TV+ GT GY+ PEY    + T
Sbjct: 161 IHRDVKSINILLDENFVPKITDFGISK-KGTELDQTHLSTVVKGTLGYIDPEYFIKGRLT 219

Query: 718 TKCDVYSFGVVLMELITGRKPVEDDFGDNK-NIIYWVSIKVDTKEGIMEVLDKKLSGSFR 776
            K DVYSFGVVL E++  R  +         N+  W     +    + +++D  L+   R
Sbjct: 220 EKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHN-NGQLEQIVDPNLADKIR 278

Query: 777 -DEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
            + + +    A++C + S   RP+M +V+  L  A
Sbjct: 279 PESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA 313

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  320 bits (823), Expect = e-103
 Identities = 102/306 (33%), Positives = 154/306 (50%), Gaps = 34/306 (11%)

Query: 518 SFDQREILEA---------MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSAS 568
           SF   E+                NK+G+GG G VYK  +N    VAVKKL +     +  
Sbjct: 14  SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN-NTTVAVKKLAAMVDITT-- 70

Query: 569 DTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN-----LLVYEYMPNGNLWDAL 623
                +L +    E++ +   +H+N+V+L  +      +      LVY YMPNG+L D L
Sbjct: 71  ----EELKQQFDQEIKVMAKCQHENLVELLGF-----SSDGDDLCLVYVYMPNGSLLDRL 121

Query: 624 H--KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
               G   L W  R KIA G A G+ +LH       IHRDIKS NILLD  +  K++DFG
Sbjct: 122 SCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFG 178

Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           +A+    +  +   T+ I GT  Y+APE     + T K D+YSFGVVL+E+ITG   V D
Sbjct: 179 LAR-ASEKFAQTVMTSRIVGTTAYMAPEA-LRGEITPKSDIYSFGVVLLEIITGLPAV-D 235

Query: 742 DFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN 801
           +  + + ++       D ++ I + +DKK++ +    +  +  +A +C  +    RP + 
Sbjct: 236 EHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIK 295

Query: 802 EVVQLL 807
           +V QLL
Sbjct: 296 KVQQLL 301

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  271 bits (696), Expect = 9e-81
 Identities = 64/444 (14%), Positives = 135/444 (30%), Gaps = 46/444 (10%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF 65
           +T        +  LR+  + N+ F  +     +   N E     +               
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-------ED-LKWD 246

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFIT--------GHIPPEIGLLKN 117
            L  L  + +  C    ++P  +  +  +  + +  N                +  + + 
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 118 LRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL 177
           ++ + + YN      +   L  + +L  L+   N L G    +     KL  L L  N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQI 365

Query: 178 SGEISSVIANSTTLTMLSLYDNSLTGEVPQ--DLGQWSPLVVLDLSENKLSG-------P 228
           +   ++    +  +  LS   N L   +P   D    S +  +D S N++         P
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 229 LPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEG-------SIPEGI 281
           L         +    +  N  S    +  +    L    +  N L            E  
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 282 LSLPHVSIIDLSYNSFSG-PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDL 340
            +   ++ IDL +N  +             L  + +  N  S   P++   + +L    +
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543

Query: 341 SDNL------LSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT 394
            +             P GI     L  L + SN +   +   +    +++VLD+ +N   
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNI 600

Query: 395 GYIPESLCELLP-NSINFSNNRLS 417
                 +C  +         ++  
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  269 bits (691), Expect = 5e-80
 Identities = 72/454 (15%), Positives = 148/454 (32%), Gaps = 46/454 (10%)

Query: 5   YLTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESS 63
               ++           ++   +N  T     +V  LT L       +           +
Sbjct: 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS------PFVAEN 222

Query: 64  IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL 123
           I    +           +        N+  LTD+E+        +P  +  L  ++ + +
Sbjct: 223 ICEAWENE--NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 124 YYNQ-------QLAGTIPEELGNLTELTDLDMSVNHL-SGKIPESILRLPKLRVLQLYNN 175
             N+       +       +     ++  + +  N+L +  +  S+ ++ KL +L+   N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 176 SLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG-PLPAKVC 234
            L G++ +   +   L  L+L  N +T       G    +  L  + NKL   P      
Sbjct: 341 QLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 235 SRGKLQYFLVLQNMFSGV-------LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHV 287
           S   +       N    V       L  +  +  N+    +SNN +     E   +   +
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 288 SIIDLSYNSFSG-------PIANTVGNARNLSELFMQRNQISGFIPSEIYRA--ISLVKI 338
           S I+L  N  +               N   L+ + ++ N+++  +  +        LV I
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGI 518

Query: 339 DLSDNLLSGPIPSGIGNLKKL------NLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNL 392
           DLS N  S   P+   N   L      N    Q N+     P  ++   SL  L + +N 
Sbjct: 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 393 LTGYIPESLCELLPNSINFSNNRLSGPIPLSLIK 426
           +   + E +   + + ++  +N         +  
Sbjct: 578 IRK-VNEKITPNI-SVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  258 bits (661), Expect = 9e-76
 Identities = 67/447 (14%), Positives = 138/447 (30%), Gaps = 41/447 (9%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVL--SFNENPGFKLWKLPESSIFRLTKL 70
            +    +  L L     +G+ P ++  LT LEVL    +     +    P   I      
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP-KGISANMSD 135

Query: 71  RIMVLATCALHGQIPASIG--NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
                                + + L    +  +     I     +     Q+    N  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN- 194

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
               + + +  LT+L    M  +    +                              N 
Sbjct: 195 -ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNL 248

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKL--------SGPLPAKVCSRGKLQ 240
             LT + +Y+     ++P  L     + +++++ N+              A      K+Q
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 241 YFLVLQNMF-SGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG 299
              +  N   +  +  SL + K L       N LEG +P    S   ++ ++L+YN  + 
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE 367

Query: 300 PIANTVGNARNLSELFMQRNQISGFIPS-EIYRAISLVKIDLSDNLLSG-------PIPS 351
             AN  G    +  L    N++       +      +  ID S N +         P+  
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 352 GIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSI-- 409
                  ++ + L +N+++       S+   L+ ++L  N+LT  IP++  +    +   
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKN 486

Query: 410 -------NFSNNRLSGPIPLSLIKEGL 429
                  +   N+L+  +        L
Sbjct: 487 TYLLTSIDLRFNKLTK-LSDDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  230 bits (589), Expect = 8e-66
 Identities = 53/363 (14%), Positives = 113/363 (31%), Gaps = 23/363 (6%)

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ---QLAGTIP 134
                Q   S+ +   +T L L G   +G +P  IG L  L  L L  +          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 135 EELGNLTELTDLDMSVNHLSGKIPESI--LRLPKLRVLQLYNNSLSGEISSVIANSTTLT 192
           + +              H      +         L    + ++     I      +   T
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 193 MLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV 252
            +    N++T  V + + + + L    +  +        +       +Y           
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKT 240

Query: 253 LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSF--------SGPIANT 304
                   K+L    V N      +P  + +LP + +I+++ N                 
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 305 VGNARNLSELFMQRNQI-SGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLM 363
                 +  +++  N + +  + + + +   L  ++   N L G +P+  G+  KL  L 
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLN 359

Query: 364 LQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIP 421
           L  N++     N     + +  L  ++N L         + +    +I+FS N +     
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 422 LSL 424
            + 
Sbjct: 420 KNF 422

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  156 bits (397), Expect = 4e-40
 Identities = 40/313 (12%), Positives = 89/313 (28%), Gaps = 28/313 (8%)

Query: 126 NQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
           N    G   +   N     +LDM           S+    ++  L L     SG +   I
Sbjct: 46  NWSQQGFGTQPGANWNFNKELDMWGAQ----PGVSLNSNGRVTGLSLEGFGASGRVPDAI 101

Query: 186 ANSTTLTMLSLYDNSLTG----EVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRG--KL 239
              T L +L+L  +          P+ +                               L
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161

Query: 240 QYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG 299
               +  +     +  S        +    +N++   + + ++ L  +    +  + F  
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVA 220

Query: 300 PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKL 359
                     N         Q       +      L  +++ +      +P+ +  L ++
Sbjct: 221 ENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 360 NLLMLQSNKLNS--------SIPNSLSSLKSLNVLDLS-NNLLTGYIPESLCELLPN--S 408
            L+ +  N+  S                 + + ++ +  NNL T  +  SL + +     
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGM 334

Query: 409 INFSNNRLSGPIP 421
           +    N+L G +P
Sbjct: 335 LECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 7e-16
 Identities = 15/141 (10%), Positives = 44/141 (31%), Gaps = 8/141 (5%)

Query: 291 DLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGP-- 348
           +   + +      ++ +   ++ L ++    SG +P  I +   L  + L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 349 --IPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNV--LDLSNNLLTGYIPESLCEL 404
              P GI                  +  +        ++    ++++     I +S    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 405 LP-NSINFSNNRLSGPIPLSL 424
           L    I   +N ++  +  ++
Sbjct: 183 LKDTQIGQLSNNITF-VSKAV 202

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 11/122 (9%), Positives = 36/122 (29%), Gaps = 9/122 (7%)

Query: 327 SEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVL 386
               +  +    +   ++        + +  ++  L L+    +  +P+++  L  L VL
Sbjct: 51  GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 387 DLSNNLLTG----YIPESLCELLP-NSINFSNNRLSGPIPLSLIKEGLVE----SFSGNP 437
            L ++        + P+ +   +                     +E   +      + +P
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

Query: 438 GL 439
             
Sbjct: 171 QQ 172

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  250 bits (641), Expect = 1e-76
 Identities = 77/334 (23%), Positives = 121/334 (36%), Gaps = 47/334 (14%)

Query: 499 DETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKL 558
               S      +           + +   +       +G  G V+K  L   E VAVK  
Sbjct: 6   HHHSSGVDLGTEN-------LYFQSM--PLQLLEVKARGRFGCVWKAQLL-NEYVAVKIF 55

Query: 559 WSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKL--YCYFSSLYCN--LLVYEYM 614
                     D    Q     + EV +L  ++H+NI++        +       L+  + 
Sbjct: 56  -------PIQDKQSWQN----EYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFH 104

Query: 615 PNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLS-------PIIHRDIKSTNI 667
             G+L D L   +  + W     IA  +A+GLAYLH  +          I HRDIKS N+
Sbjct: 105 EKGSLSDFLKANV--VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNV 162

Query: 668 LLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA-----YSSKATTKCDV 722
           LL  N    +ADFG+A   +A      T     GT  Y+APE       +   A  + D+
Sbjct: 163 LLKNNLTACIADFGLALKFEAGKSAGDTHGQ-VGTRRYMAPEVLEGAINFQRDAFLRIDM 221

Query: 723 YSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME-VLDKKLSGSFRDE--- 778
           Y+ G+VL EL +     +    +          +  + E + E V+ KK     RD    
Sbjct: 222 YAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQK 281

Query: 779 ---MIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
              M  +      C       R +   V + + +
Sbjct: 282 HAGMAMLCETIEECWDHDAEARLSAGCVGERITQ 315

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  245 bits (628), Expect = 9e-75
 Identities = 76/300 (25%), Positives = 133/300 (44%), Gaps = 30/300 (10%)

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITG--HIPPEIGLLKNLRQLELYYNQQLAGTIPE 135
               G +  +      + +L+L+G  +     IP  +  L  L  L +     L G IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 136 ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLS 195
            +  LT+L  L ++  ++SG IP+ + ++  L  L    N+LSG +   I++   L  ++
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 196 LYDNSLTGEVPQDLGQWSPLV-VLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP 254
              N ++G +P   G +S L   + +S N+L+G                         +P
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK------------------------IP 191

Query: 255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSEL 314
            + A   NL    +S N LEG       S  +   I L+ NS +  +   VG ++NL+ L
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGL 249

Query: 315 FMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP 374
            ++ N+I G +P  + +   L  +++S N L G IP G GNL++ ++    +NK     P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  235 bits (603), Expect = 3e-71
 Identities = 84/365 (23%), Positives = 137/365 (37%), Gaps = 79/365 (21%)

Query: 83  QIPASIGNVTSL----TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGT--IPEE 136
           QI   +GN T+L       +       G +         +  L+L     L     IP  
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPYPIPSS 71

Query: 137 LGNLTELTDLDMS-VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLS 195
           L NL  L  L +  +N+L G IP +I +L +L  L + + ++SG I   ++   TL  L 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 196 LYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD 255
              N+L+G +P  +     LV +    N++SG +P                        D
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP------------------------D 167

Query: 256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELF 315
           S      L                          + +S N  +G I  T  N  NL+ + 
Sbjct: 168 SYGSFSKLFTS-----------------------MTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 316 MQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPN 375
           + RN + G          +  KI L+ N L+  +   +G  K LN L L++N++  ++P 
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 376 SLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSG 435
            L+ LK L+ L++S N L G IP+          N             +       +++ 
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQGG--------NLQR--------FDVS------AYAN 300

Query: 436 NPGLC 440
           N  LC
Sbjct: 301 NKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 24/99 (24%), Positives = 28/99 (28%), Gaps = 32/99 (32%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVL--SFNENPGFKLWKLPESS 63
           L   L      +NL  LDL NN   G  P  +  L  L  L  SFN              
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN------------- 279

Query: 64  IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGN 102
                           L G+IP   GN+          N
Sbjct: 280 ----------------LCGEIPQG-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 6   LTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPG 53
           + GTLP   + ++ L  L++S N   G+ P    NL   +V ++  N  
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  248 bits (636), Expect = 7e-72
 Identities = 87/437 (19%), Positives = 150/437 (34%), Gaps = 30/437 (6%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
              +  L+ L+L +N  +     +    TNL  L    N    + K+  +   +   L  
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN---SIQKIKNNPFVKQKNLIT 125

Query: 73  MVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKN--LRQLELYYNQQLA 130
           + L+   L      +   + +L +L L+ N I      E+ +  N  L++LEL  N Q+ 
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIK 184

Query: 131 GTIPEELGNLTELTDLDMSVNHLSGKIPESI---LRLPKLRVLQLYNNSLSGEISSVIAN 187
              P     +  L  L ++   L   + E +   L    +R L L N+ LS   ++    
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 188 --STTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
              T LTML L  N+L             L    L  N +       +     ++Y  + 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 246 QNMFSGVL---------PDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYN- 295
           ++     +           S    K L    + +N + G        L ++  + LS + 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 296 -SFSGPIANTVGN--ARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSG 352
            S       T  +     L  L + +N+IS            L  +DL  N +   +   
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 353 -IGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG--YIPESLCELLPN-- 407
               L+ +  + L  NK      NS + + SL  L L    L      P      L N  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LRNLT 483

Query: 408 SINFSNNRLSGPIPLSL 424
            ++ SNN ++      L
Sbjct: 484 ILDLSNNNIANINDDML 500

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  245 bits (627), Expect = 1e-70
 Identities = 81/431 (18%), Positives = 155/431 (35%), Gaps = 30/431 (6%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
           +    D S+   T Q P  +   TN+ VL+   N   +L +LP ++  R ++L  + +  
Sbjct: 5   SHEVADCSHLKLT-QVPDDLP--TNITVLNLTHN---QLRRLPAANFTRYSQLTSLDVGF 58

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL 137
             +    P     +  L  L L  N ++           NL +L L  N  +        
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPF 117

Query: 138 GNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIA--NSTTLTMLS 195
                L  LD+S N LS     + ++L  L+ L L NN +    S  +    +++L  L 
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 196 LYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQ---NMFSGV 252
           L  N +    P        L  L L+  +L   L  K+C          L    +  S  
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 253 LPDSLARCK--NLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARN 310
              +    K  NL    +S N+L     +    LP +    L YN+     ++++    N
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 311 LSELFMQRN---------QISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNL 361
           +  L ++R+          +             L  +++ DN + G   +    L  L  
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357

Query: 362 LMLQSNKLNSSIPNSLS----SLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNR 415
           L L ++  +     + +    +   L++L+L+ N ++    ++    L +   ++   N 
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-LGHLEVLDLGLNE 416

Query: 416 LSGPIPLSLIK 426
           +   +     +
Sbjct: 417 IGQELTGQEWR 427

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  238 bits (610), Expect = 3e-68
 Identities = 84/440 (19%), Positives = 151/440 (34%), Gaps = 33/440 (7%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVF---NLTNLEVLSFNENPGFKLWKLPESSIF--R 66
            F  +  L  L L+N          +      T++  LS + +   +L     ++    +
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS---QLSTTSNTTFLGLK 246

Query: 67  LTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYN 126
            T L ++ L+   L+     S   +  L    L  N I       +  L N+R L L  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 127 Q--------QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS 178
                     L          L  L  L+M  N + G        L  L+ L L N+  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 179 GEISSVIA----NSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKV- 233
               +         + L +L+L  N ++            L VLDL  N++   L  +  
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 234 CSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEG--SIPEGILSLPHVSIID 291
                +    +  N +  +  +S A   +L R  +    L+   S P     L +++I+D
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 292 LSYNSFSGPIANTVGNARNLSELFMQRNQIS--------GFIPSEIYRAISLVKIDLSDN 343
           LS N+ +    + +     L  L +Q N ++        G     +     L  ++L  N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 344 LLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCE 403
                      +L +L ++ L  N LN+   +  ++  SL  L+L  NL+T    +    
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 404 LLPN--SINFSNNRLSGPIP 421
              N   ++   N       
Sbjct: 607 AFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  237 bits (606), Expect = 1e-67
 Identities = 95/454 (20%), Positives = 162/454 (35%), Gaps = 41/454 (9%)

Query: 6   LTGTLPD-FSPMQNLRRLDLSNNLFTG--QFPLSVFNLTNLEVLSFNENPGFKLWKLPES 62
           L+ T       ++NL+ L LSNN         L +F  ++L+ L  + N   ++ +    
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN---QIKEFSPG 189

Query: 63  SIFRLTKLRIMVLATCALHGQIPASIG---NVTSLTDLELTGNFITGHIPPEIGLLK--N 117
               + +L  + L    L   +   +      TS+ +L L+ + ++         LK  N
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 118 LRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN-- 175
           L  L+L YN  L     +    L +L    +  N++      S+  L  +R L L  +  
Sbjct: 250 LTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 176 -------SLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS-G 227
                  SL             L  L++ DN + G           L  L LS +  S  
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 228 PLPAKVCS---RGKLQYFLVLQ-NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS 283
            L  +         L   L L  N  S +  D+ +   +L    +  N +   +      
Sbjct: 369 TLTNETFVSLAHSPLHI-LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 284 -LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGF--IPSEIYRAISLVKIDL 340
            L ++  I LSYN +     N+     +L  L ++R  +      PS      +L  +DL
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 341 SDNLLSGPIPSGIGNLKKLNLLMLQSNKLNS--------SIPNSLSSLKSLNVLDLSNNL 392
           S+N ++      +  L+KL +L LQ N L               L  L  L++L+L +N 
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 393 LTGYIPESLCELLPN--SINFSNNRLSGPIPLSL 424
                 E   +L      I+   N L+       
Sbjct: 548 FDEIPVEVFKDL-FELKIIDLGLNNLNTLPASVF 580

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  234 bits (599), Expect = 9e-67
 Identities = 95/471 (20%), Positives = 154/471 (32%), Gaps = 35/471 (7%)

Query: 2   SFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPE 61
               L     D     +L++L+LS+N      P     +  L  L  N            
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 62  SSIFRLTKLRIMVLATCALHGQIPASIGN--VTSLTDLELTGNFITGHIPPEIGLLKNLR 119
                 T +R + L+   L      +      T+LT L+L+ N +          L  L 
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 120 QLELYYNQQLAGTIPEELGNLTELTDLDM---------SVNHLSGKIPESILRLPKLRVL 170
              L YN  +       L  L  +  L++         S+  L      S   L  L  L
Sbjct: 276 YFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 171 QLYNNSLSGEISSVIANSTTLTMLSLYDN-----SLTGEVPQDLGQWSPLVVLDLSENKL 225
            + +N + G  S++      L  LSL ++     +LT E    L   SPL +L+L++NK+
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKI 393

Query: 226 SGPLPAKVCSRGKLQYFLVLQNMFSGVLP-DSLARCKNLLRFRVSNNHLEGSIPEGILSL 284
           S          G L+   +  N     L        +N+    +S N            +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 285 PHVSIIDLSYNSFSG--PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSD 342
           P +  + L   +        +     RNL+ L +  N I+      +     L  +DL  
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 343 NLLS--------GPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT 394
           N L+        G     +  L  L++L L+SN  +         L  L ++DL  N L 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 395 GYIPESLCELLPN--SINFSNNRLSGPIPLSLIK--EGLVE-SFSGNPGLC 440
                       +  S+N   N ++             L E     NP  C
Sbjct: 574 TLPASVFNNQ-VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  232 bits (594), Expect = 4e-66
 Identities = 94/443 (21%), Positives = 166/443 (37%), Gaps = 37/443 (8%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPES--SIFRLTKL 70
           F   +NL  LDLS+N  +     +   L NL+ L  + N   K+  L      IF  + L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN---KIQALKSEELDIFANSSL 173

Query: 71  RIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGL---LKNLRQLELYYNQ 127
           + + L++  +    P     +  L  L L    +   +  ++ L     ++R L L  + 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS- 232

Query: 128 QLAGTIPEELGNL--TELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
           QL+ T       L  T LT LD+S N+L+    +S   LP+L    L  N++    S  +
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
                +  L+L  +                    +S   L             L++  + 
Sbjct: 293 HGLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGI----LSLPHVSIIDLSYNSFSGPI 301
            N   G+  +      NL    +SN+              L+   + I++L+ N  S   
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 302 ANTVGNARNLSELFMQRNQISGFIP-SEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
           ++      +L  L +  N+I   +   E     ++ +I LS N       +    +  L 
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 361 LLMLQSNKLNS--SIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRL 416
            LML+   L +  S P+    L++L +LDLSNN +   I + + E L     ++  +N L
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNL 516

Query: 417 SGPIPLSLIKEGLVESFSGNPGL 439
           +  +       G +    G   L
Sbjct: 517 AR-LWKHANPGGPIYFLKGLSHL 538

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  198 bits (506), Expect = 4e-54
 Identities = 80/416 (19%), Positives = 140/416 (33%), Gaps = 27/416 (6%)

Query: 1   MSFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNEN------PG 53
           +S+  L     D F+ +  L    L  N     F  S+  L N+  L+   +        
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 54  FKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIG 113
             L K+ + S   L  L  + +    + G        + +L  L L+ +F +        
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 114 L----LKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILR-LPKLR 168
                   L  L L  N+ ++    +    L  L  LD+ +N +  ++     R L  + 
Sbjct: 375 FVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 169 VLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTG--EVPQDLGQWSPLVVLDLSENKLS 226
            + L  N       +  A   +L  L L   +L      P        L +LDLS N ++
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 227 GPLPAKVCSRGKLQYFLVLQN---------MFSGVLPDSLARCKNLLRFRVSNNHLEGSI 277
                 +    KL+  L LQ+            G     L    +L    + +N  +   
Sbjct: 494 NINDDMLEGLEKLEI-LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 278 PEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI-SLV 336
            E    L  + IIDL  N+ +   A+   N  +L  L +Q+N I+         A  +L 
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612

Query: 337 KIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP-NSLSSLKSLNVLDLSNN 391
           ++D+  N       S    +  +N       +L+S    N+        V     +
Sbjct: 613 ELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  187 bits (476), Expect = 3e-50
 Identities = 80/357 (22%), Positives = 125/357 (35%), Gaps = 38/357 (10%)

Query: 92  TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVN 151
            S    + +   +T  +P    L  N+  L L +NQ L           ++LT LD+  N
Sbjct: 4   VSHEVADCSHLKLT-QVPD--DLPTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFN 59

Query: 152 HLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ 211
            +S   PE   +LP L+VL L +N LS       A  T LT                   
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT------------------- 100

Query: 212 WSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNN 271
                 L L  N +          +  L    +  N  S     +  + +NL    +SNN
Sbjct: 101 -----ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 272 HLEGSIPE--GILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI 329
            ++    E   I +   +  ++LS N               L  LF+   Q+   +  ++
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 330 YRAI---SLVKIDLSDNLLSGPIPSGIGNLKKLNL--LMLQSNKLNSSIPNSLSSLKSLN 384
              +   S+  + LS++ LS    +    LK  NL  L L  N LN    +S + L  L 
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 385 VLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLSLIKEGLVESFSGNPGL 439
              L  N +      SL   L N   +N   +     I L+ + +    SF     L
Sbjct: 276 YFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  226 bits (579), Expect = 6e-68
 Identities = 89/298 (29%), Positives = 136/298 (45%), Gaps = 43/298 (14%)

Query: 513 SFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQ 572
           S H I + + E+ E       VG+G  G V K      + VA+K++ S+           
Sbjct: 1   SLHMIDYKEIEVEE------VVGRGAFGVVCKAKWR-AKDVAIKQIESE----------- 42

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK--GLVHL 630
               K    E+  L  + H NIVKLY    +  C  LV EY   G+L++ LH    L + 
Sbjct: 43  -SERKAFIVELRQLSRVNHPNIVKLYGACLNPVC--LVMEYAEGGSLYNVLHGAEPLPYY 99

Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ-PKVADFGIAKVLQAR 689
                       +QG+AYLH      +IHRD+K  N+LL       K+ DFG A      
Sbjct: 100 TAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACD---- 155

Query: 690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI 749
               +  T   G+  ++APE    S  + KCDV+S+G++L E+IT RKP + + G     
Sbjct: 156 --IQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFD-EIGGPAFR 212

Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           I W      T+  +++ L K +       ++       RC SK P+ RP+M E+V+++
Sbjct: 213 IMWAVHN-GTRPPLIKNLPKPIE-----SLMT------RCWSKDPSQRPSMEEIVKIM 258

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  236 bits (603), Expect = 4e-66
 Identities = 79/473 (16%), Positives = 162/473 (34%), Gaps = 58/473 (12%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQF------PLSVFNLTNLEVLSFNENPGFKLWKLPESS 63
            P+  P++   R+ L +               ++  LT L+++ F  +          + 
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS---PFTYDNIA- 466

Query: 64  IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL 123
                            +     S  N+  LTD+EL        +P  +  L  L+ L +
Sbjct: 467 ----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522

Query: 124 YYNQ--------QLAGTIPEELGNLTELTDLDMSVNHLSGKIPES--ILRLPKLRVLQLY 173
             N+             + ++     ++    M  N+L    P S  + ++ KL +L   
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCV 581

Query: 174 NNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSP-LVVLDLSENKLSG-PLPA 231
           +N +   + +    +  LT L L  N +  E+P+D   ++  +  L  S NKL   P   
Sbjct: 582 HNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638

Query: 232 KVCSRGKLQYFLVLQNMFSGVLPDSLA-----RCKNLLRFRVSNNHLEGSIPEGILSLPH 286
              S   +       N       +        +  N     +S N ++    E   +   
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 287 VSIIDLSYNSFS-------GPIANTVGNARNLSELFMQRNQISGFIPSEIY--RAISLVK 337
           +S I LS N  +        P      N   L+ + ++ N+++  +  +        L  
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSN 757

Query: 338 IDLSDNLLSGPIPSGIGNLKKLNLLMLQ------SNKLNSSIPNSLSSLKSLNVLDLSNN 391
           +D+S N  S   P+   N  +L    ++       N++    P  +++  SL  L + +N
Sbjct: 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 392 LLTGYIPESLCELLPNSINFSNNRL-SGPIP--LSLIKEGLVE-SFSGNPGLC 440
            +   + E L   L   ++ ++N   S  +      I+ G+    +     + 
Sbjct: 817 DIRK-VDEKLTPQL-YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  225 bits (576), Expect = 2e-62
 Identities = 68/444 (15%), Positives = 131/444 (29%), Gaps = 48/444 (10%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF 65
           +T        +  L+ +  +N+ FT       +   N +     EN         E S  
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--------ELSWS 488

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITG---------HIPPEIGLLK 116
            L  L  + L  C    Q+P  + ++  L  L +  N              +  +     
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 117 NLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS 176
            ++   + YN          L  + +L  LD   N +     E+     KL  L+L  N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQ 606

Query: 177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQD--LGQWSPLVVLDLSENKLSGPLPAKVC 234
           +        A +  +  L    N L   +P          +  +D S NK+       + 
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNIS 664

Query: 235 SRGKLQYFLVLQ------NMFSGVLPDSLARCKNLLRFRVSNNHLE-------GSIPEGI 281
                   +         N       +  A    +    +SNN +               
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 282 LSLPHVSIIDLSYNSFSG-PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDL 340
            +   ++ IDL +N  +             LS + +  N  S   P++   +  L    +
Sbjct: 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI 783

Query: 341 SDNL------LSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN-LL 393
                     +    P+GI     L  L + SN +   +   L     L +LD+++N  +
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNI 840

Query: 394 TGYIPESLCELLPNSINFSNNRLS 417
           +  +      +         ++  
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  204 bits (520), Expect = 4e-55
 Identities = 68/441 (15%), Positives = 134/441 (30%), Gaps = 43/441 (9%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
                 +  L L+     G+ P ++  LT L+VLSF  +                    +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH---SETVSGRLFGDEELTPDM 375

Query: 73  MVLATCALHGQI-PASIGNVTSLTDLELTGNFITGH---IPPEIGLLKNLRQLELYYNQQ 128
                  +        +     L   +L  + I  +    P +     +L+  ++     
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
               I + +  LT+L  +  + +  +                               +N 
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNL 490

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
             LT + LY+     ++P  L     L  L+++ N+                        
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL---------------KA 535

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTVGN 307
               L D       +  F +  N+LE       L  +  + ++D  +N          G 
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGT 593

Query: 308 ARNLSELFMQRNQISGFIPSEI-YRAISLVKIDLSDNLLSG-PIPSGIGNLKKLNLLMLQ 365
              L++L +  NQI   IP +       +  +  S N L   P      ++  +  +   
Sbjct: 594 NVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

Query: 366 SNKLNSSIPNSLSSL-----KSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSG 418
            NK+ S   N   S+      + + + LS N +    P  L        +I  SNN ++ 
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTS 711

Query: 419 PIPLSLIKEGLVESFSGNPGL 439
            IP + + +    ++     L
Sbjct: 712 -IPENSL-KPKDGNYKNTYLL 730

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (472), Expect = 6e-49
 Identities = 54/357 (15%), Positives = 109/357 (30%), Gaps = 35/357 (9%)

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL 137
                Q    + N   +T L L G    G +P  IG L  L+ L    +     +     
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFG 367

Query: 138 GNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLS-----GEISSVIANSTTL 191
                    +   + +     +  L    +L +  L  ++++       I      S   
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 192 TMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSG 251
           T +    N +T  + + + + + L ++  + +  +    A        +           
Sbjct: 428 TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYE 481

Query: 252 VLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNL 311
               S +  K+L    + N      +P+ +  LP +  ++++ N             R  
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-- 539

Query: 312 SELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSG-PIPSGIGNLKKLNLLMLQSNKLN 370
                        +  +      +    +  N L   P  + +  + KL LL    NK+ 
Sbjct: 540 -------------LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV- 585

Query: 371 SSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSG-PIPLSL 424
                +  +   L  L L  N +   IPE  C        + FS+N+L   P   + 
Sbjct: 586 -RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  136 bits (345), Expect = 3e-33
 Identities = 34/326 (10%), Positives = 95/326 (29%), Gaps = 24/326 (7%)

Query: 115 LKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN 174
           LK + +     N +          +     + +  ++    +    +    ++  L L  
Sbjct: 274 LKAIWEALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332

Query: 175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVC 234
               G +   I   T L +LS   +S T        +     + +  ++++         
Sbjct: 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392

Query: 235 SRG-KLQYFLVLQNMFSGV-----LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVS 288
               +L    +LQ+  +       +           +     N +   I + I  L  + 
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQ 451

Query: 289 IIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGP 348
           II  + + F+           +  +      +              L  ++L +      
Sbjct: 452 IIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 349 IPSGIGNLKKLNLLMLQSNKLNS---------SIPNSLSSLKSLNVLDLSNNLLTGYIPE 399
           +P  + +L +L  L +  N+  S          + +   +   + +  +  N L  +   
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 400 SLCELLPN--SINFSNNRLSGPIPLS 423
           +  + +     ++  +N++       
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEAFG 592

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.2 bits (177), Expect = 5e-13
 Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 8/142 (5%)

Query: 290 IDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPI 349
            +   + +       + N   ++ L +      G +P  I +   L  +    +  +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 350 PSGIGNLKKLNLLMLQSNKLNSSIPN-SLSSLKSLNVLDLSNNLLTGY------IPESLC 402
                     ++   + +++        L   + LN+ DL  + +           +S  
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 403 ELLPNSINFSNNRLSGPIPLSL 424
            L    I    NR++  I  ++
Sbjct: 424 SLKDTQIGNLTNRITF-ISKAI 444

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  218 bits (558), Expect = 4e-65
 Identities = 76/309 (24%), Positives = 135/309 (43%), Gaps = 40/309 (12%)

Query: 508 PYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVS 566
            +       ++ ++ E  +      ++G+GG G V+K   +    VVA+K L    ++  
Sbjct: 7   EFPKSRLPTLADNEIEYEK------QIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGE 60

Query: 567 ASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKG 626
               ++ Q     + EV  + N+ H NIVKLY    +     +V E++P G+L+  L   
Sbjct: 61  TEMIEKFQE---FQREVFIMSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDK 115

Query: 627 LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD-----VNYQPKVADFG 681
              + W  + ++   +A G+ Y+ +    PI+HRD++S NI L           KVADFG
Sbjct: 116 AHPIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFG 174

Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPE--YAYSSKATTKCDVYSFGVVLMELITGRKPV 739
           +++          + + + G + ++APE   A     T K D YSF ++L  ++TG  P 
Sbjct: 175 LSQQ------SVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGP- 227

Query: 740 EDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI-RCTSKSPATRP 798
              F +                 I  + ++ L  +  ++    LR  I  C S  P  RP
Sbjct: 228 ---FDEYSYGKIKF---------INMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRP 275

Query: 799 TMNEVVQLL 807
             + +V+ L
Sbjct: 276 HFSYIVKEL 284

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  226 bits (578), Expect = 2e-64
 Identities = 83/463 (17%), Positives = 147/463 (31%), Gaps = 47/463 (10%)

Query: 1   MSFMYLTGTLPD-FSPMQNLRRLDLSNNLFTG-QFPLSVFNLTNLEVLSFNENPGFKLWK 58
                L          ++ L+ L++++NL    + P    NLTNLE L  + N   K+  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN---KIQS 163

Query: 59  LPESSIFRLTKLRIMV----LATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGL 114
           +  + +  L ++ ++     L+   ++  I         L  L L  NF + ++      
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 115 -LKNLRQLELYYNQ-----QLAGTIPEELGNLTELTDLDMSVNHLS---GKIPESILRLP 165
            L  L    L   +      L       L  L  LT  +  + +L      I +    L 
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 166 KLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQW------------- 212
            +    L + ++        + +     L L +          L                
Sbjct: 283 NVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 213 ------SPLVVLDLSENKLS--GPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLL 264
                   L  LDLS N LS  G           L+Y  +  N     +  +    + L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 399

Query: 265 RFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISG 323
                +++L+      +  SL ++  +D+S+               +L  L M  N    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 324 FIPSEI-YRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKS 382
               +I     +L  +DLS   L    P+   +L  L +L +  N   S        L S
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519

Query: 383 LNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLS 423
           L VLD S N +     + L     +   +N + N  +      
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  221 bits (565), Expect = 1e-62
 Identities = 77/422 (18%), Positives = 146/422 (34%), Gaps = 30/422 (7%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
           + + LDLS N        S F+   L+VL  +     ++  + + +   L+ L  ++L  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTG 85

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL 137
             +      +   ++SL  L      +       IG LK L++L + +N   +  +PE  
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 138 GNLTELTDLDMSVNHLSGKIPESILRLPKLRV----LQLYNNSLSGEISSVIANSTTLTM 193
            NLT L  LD+S N +       +  L ++ +    L L  N ++            L  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHK 204

Query: 194 LSLYDNSLTGEVPQDLGQW-SPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQ------ 246
           L+L +N  +  V +   Q  + L V  L   +       +   +  L+    L       
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 247 ---NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIAN 303
              + +   + D      N+  F + +  +E               ++L    F      
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTL 322

Query: 304 TVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLS--GPIPSGIGNLKKLNL 361
            + + + L+    +       +        SL  +DLS N LS  G           L  
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 362 LMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGP 419
           L L  N +  ++ ++   L+ L  LD  ++ L      S+   L N   ++ S+      
Sbjct: 378 LDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 420 IP 421
             
Sbjct: 437 FN 438

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  217 bits (555), Expect = 2e-61
 Identities = 77/452 (17%), Positives = 149/452 (32%), Gaps = 49/452 (10%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
           +  + +L  L L+ N        +   L++L+ L   E     L  L    I  L  L+ 
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET---NLASLENFPIGHLKTLKE 128

Query: 73  MVLATCALHG-QIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLR----QLELYYNQ 127
           + +A   +   ++P    N+T+L  L+L+ N I      ++ +L  +      L+L  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGE------ 180
            +    P     +  L  L +  N  S  + ++ +  L  L V +L       E      
Sbjct: 189 -MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSP---LVVLDLSENKLSGPLPAKVCSRG 237
             S +     LT+       L   +   +  ++    +    L    +            
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-- 304

Query: 238 KLQYFLVLQNMFSGVLPDSLARCKNLLRFR-------------------VSNNHL--EGS 276
             Q+  ++   F       L   K L                       +S N L  +G 
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 277 IPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI-SL 335
             +       +  +DLS+N     +++       L  L  Q + +       ++ ++ +L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 336 VKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSI-PNSLSSLKSLNVLDLSNNLLT 394
           + +D+S              L  L +L +  N    +  P+  + L++L  LDLS   L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 395 GYIPESLCELLPN--SINFSNNRLSGPIPLSL 424
              P +   L  +   +N S+N          
Sbjct: 484 QLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPY 514

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  216 bits (551), Expect = 1e-60
 Identities = 74/460 (16%), Positives = 140/460 (30%), Gaps = 50/460 (10%)

Query: 6   LTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSI 64
           +       FS + +L++L              + +L  L+ L+   N    +        
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN---LIQSFKLPEY 144

Query: 65  FR-LTKLRIMVLATCALHGQIPASIGNVTSLT----DLELTGNFITGHIPPEIGLLKNLR 119
           F  LT L  + L++  +       +  +  +      L+L+ N +   I P       L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLH 203

Query: 120 QLELYYNQQLAGTIPEELGNLTELTDLDMSVN------HLSGKIPESILRLPKLRVLQL- 172
           +L L  N      +   +  L  L    + +       +L      ++  L  L + +  
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 173 --YNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLP 230
             Y +    +I  +    T ++  SL   ++     +D         L+L   K     P
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ-FP 320

Query: 231 AKVCSRGKLQYFLVL----------------------QNMFSGVLPDSLARCKNLLRFRV 268
                  K   F                            F G    S     +L    +
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 269 SNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI-ANTVGNARNLSELFMQRNQISGFIPS 327
           S N +   +    L L  +  +D  +++       +   + RNL  L +           
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 328 EIYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVL 386
                 SL  + ++ N         I   L+ L  L L   +L    P + +SL SL VL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 387 DLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLSL 424
           ++S+N            L  +   +++S N +       L
Sbjct: 500 NMSHNNFFSLDTFPYKCL-NSLQVLDYSLNHIMTSKKQEL 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  121 bits (305), Expect = 9e-29
 Identities = 46/216 (21%), Positives = 74/216 (34%), Gaps = 32/216 (14%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKL 59
           +SF  +     +F  ++ L  LD  ++        SVF +L NL  L  +          
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------- 432

Query: 60  PESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNL 118
                                          ++SL  L++ GN    +  P+I   L+NL
Sbjct: 433 --------------------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 119 RQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS 178
             L+L    QL    P    +L+ L  L+MS N+           L  L+VL    N + 
Sbjct: 473 TFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 179 GEISSVIANS-TTLTMLSLYDNSLTGEVP-QDLGQW 212
                 + +  ++L  L+L  N        Q   QW
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (282), Expect = 7e-26
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 5/158 (3%)

Query: 269 SNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSE 328
              +    IP+ +        +DLS+N      + +  +   L  L + R +I       
Sbjct: 15  MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 329 IYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDL 388
                 L  + L+ N +          L  L  L+     L S     +  LK+L  L++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 389 SNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLSL 424
           ++NL+  +        L N   ++ S+N++       L
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  214 bits (547), Expect = 7e-64
 Identities = 80/301 (26%), Positives = 126/301 (41%), Gaps = 46/301 (15%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           I F +  + E       +G GG G VY+     G+ VAVK            D D  Q  
Sbjct: 4   IDFAELTLEE------IIGIGGFGKVYRAFWI-GDEVAVKAARHD------PDEDISQTI 50

Query: 577 KGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
           + ++ E +    ++H NI+ L   C      C  LV E+   G L   L      +    
Sbjct: 51  ENVRQEAKLFAMLKHPNIIALRGVCLKEPNLC--LVMEFARGGPLNRVLSGK--RIPPDI 106

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP--------KVADFGIAKVL 686
               A  +A+G+ YLH   + PIIHRD+KS+NIL+    +         K+ DFG+A+  
Sbjct: 107 LVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREW 166

Query: 687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
                  +T    AG Y ++APE   +S  +   DV+S+GV+L EL+TG  P      D 
Sbjct: 167 H-----RTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRG--IDG 219

Query: 747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL 806
             + Y V++       I     +  +           ++   C +  P +RP+   ++  
Sbjct: 220 LAVAYGVAMNKLALP-IPSTCPEPFA-----------KLMEDCWNPDPHSRPSFTNILDQ 267

Query: 807 L 807
           L
Sbjct: 268 L 268

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  214 bits (548), Expect = 2e-63
 Identities = 83/297 (27%), Positives = 134/297 (45%), Gaps = 36/297 (12%)

Query: 517 ISFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           +  D  +I    +  K K+G G  GTV++ + + G  VAVK L            +++  
Sbjct: 27  MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKIL-----MEQDFHAERVN- 79

Query: 576 DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVH--LD 631
                 EV  +  +RH NIV               +V EY+  G+L+  LHK      LD
Sbjct: 80  --EFLREVAIMKRLRHPNIVLFMGAVTQPPNLS--IVTEYLSRGSLYRLLHKSGAREQLD 135

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
              R  +A+ VA+G+ YLH+    PI+HR++KS N+L+D  Y  KV DFG++++  +   
Sbjct: 136 ERRRLSMAYDVAKGMNYLHN-RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTF- 193

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
              ++   AGT  ++APE      +  K DVYSFGV+L EL T ++P  +          
Sbjct: 194 --LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGN---------- 241

Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLL 807
                ++  + +  V  K         +   +   I  C +  P  RP+   ++ LL
Sbjct: 242 -----LNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLL 293

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  222 bits (568), Expect = 5e-63
 Identities = 77/433 (17%), Positives = 148/433 (34%), Gaps = 26/433 (6%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
           +   L+ S N+       +   L NL  L        +++ + E +     +L  +VL  
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC---QIYWIHEDTFQSQHRLDTLVLTA 90

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL 137
             L      ++    +L  L      I+      +   K L  L L  N  ++     + 
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKG 149

Query: 138 GNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLY--NNSLSGEISSVIANSTTLTMLS 195
               +L  LD   N +     E +  L +   L L    N ++  I     +S     L+
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLN 208

Query: 196 LYDNSLTGEVPQDLG--QWSPLVVLDLSENKLSGPLPA--KVCSRGKLQYFLVLQNMFSG 251
                    + + L       L +    +       PA  +      ++   + ++ F  
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 252 VLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNL 311
           +  ++      L    ++  HL   +P G++ L  +  + LS N F      +  N  +L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 312 SELFMQRNQISGFIPSE-IYRAISLVKIDLSDNLL--SGPIPSGIGNLKKLNLLMLQSNK 368
           + L ++ N     + +  +    +L ++DLS + +  S      + NL  L  L L  N+
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 369 LNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLSLIK 426
             S    +      L +LDL+   L     +S  + L     +N S++ L          
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE----- 442

Query: 427 EGLVESFSGNPGL 439
               + F G P L
Sbjct: 443 ----QLFDGLPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  209 bits (534), Expect = 2e-58
 Identities = 79/425 (18%), Positives = 145/425 (34%), Gaps = 19/425 (4%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
               + L  L L +N  +       F    L+VL F  N    +  L +  +  L +   
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN---AIHYLSKEDMSSLQQATN 181

Query: 73  MVLATCALH-GQIPASIGNVTSLTDLELTGNFITGHIPPEIGL--LKNLRQLELYYNQ-- 127
           + L         I     +      L   G      I   +    +++L           
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIAN 187
            ++  + E L  ++ +  +++  ++       +      L+ L L    LS E+ S +  
Sbjct: 242 DISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 188 STTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYFLVLQ 246
            +TL  L L  N            +  L  L +  N     L          L+  L L 
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE-LDLS 358

Query: 247 N---MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIAN 303
           +     S      L    +L    +S N       E     P + ++DL++       A 
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 304 TV-GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPI---PSGIGNLKKL 359
           +   N   L  L +  + +            +L  ++L  N          + +  L +L
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478

Query: 360 NLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGP 419
            +L+L    L+S   ++ +SLK +N +DLS+N LT    E+L  L    +N ++N +S  
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISII 538

Query: 420 IPLSL 424
           +P  L
Sbjct: 539 LPSLL 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (520), Expect = 2e-56
 Identities = 70/418 (16%), Positives = 137/418 (32%), Gaps = 21/418 (5%)

Query: 20  RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA 79
           +  +  N     + P ++ N  + E L F+ N    L  +  ++  RL  L  + L  C 
Sbjct: 15  KTYNCENLGLN-EIPGTLPN--STECLEFSFN---VLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 80  LHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGN 139
           ++     +  +   L  L LT N +       +   K L+ L       ++      L N
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHN 127

Query: 140 LTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLY-- 197
              L  L +  NH+S           KL+VL   NN++       +++    T LSL   
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 198 DNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPA--KVCSRGKLQYFLVLQNMFSGVLPD 255
            N +   +       +    L+    +    +    K  +   L            + P 
Sbjct: 188 GNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 256 SLARCK--NLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSE 313
                   ++    +  ++              +  +DL+    S  + + +     L +
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKK 305

Query: 314 LFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSG-IGNLKKLNLLMLQSNKLNSS 372
           L +  N+             SL  + +  N     + +G + NL+ L  L L  + + +S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 373 --IPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLSLIK 426
                 L +L  L  L+LS N     +     +  P    ++ +  RL      S  +
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  199 bits (508), Expect = 6e-55
 Identities = 78/425 (18%), Positives = 127/425 (29%), Gaps = 42/425 (9%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
            S  + L+ L       +    + + N   LE L    N    +  +     F   KL++
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN---HISSIKLPKGFPTEKLKV 157

Query: 73  MVLATCALHGQIPASIGNVTSLTDLEL--TGNFITGHIPPEIGLLKNLRQLELYYNQQLA 130
           +     A+H      + ++   T+L L   GN I   I P        + L     Q L 
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 131 GTIPEELGN-LTELTDLDMSVNHLSGKIPESI--LRLPKLRVLQLYNNSLSGEISSVIAN 187
                   + +  L              P     L    +  + L  +      S+    
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 188 STTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN 247
            + L  L L    L+ E+P  L   S L  L LS NK                       
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF---------------------- 313

Query: 248 MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYN--SFSGPIANT 304
               +   S +   +L    +  N     +  G L  L ++  +DLS++    S      
Sbjct: 314 --ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 305 VGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLM 363
           + N  +L  L +  N+              L  +DL+   L          NL  L +L 
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 364 LQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL--LPN--SINFSNNRLSGP 419
           L  + L+ S       L +L  L+L  N       +    L  L     +  S   LS  
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491

Query: 420 IPLSL 424
              + 
Sbjct: 492 DQHAF 496

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  189 bits (483), Expect = 1e-51
 Identities = 79/423 (18%), Positives = 137/423 (32%), Gaps = 27/423 (6%)

Query: 12  DFSPMQNLRR--LDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           D S +Q      L+L+ N   G      F+    + L+F       +          +  
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVI-FKGLKNSTIQS 229

Query: 70  LRIMVLATCALHGQIPASIGNV--TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
           L +            PA    +   S+  + L  ++              L++L+L    
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEI-SSVIA 186
                +P  L  L+ L  L +S N        S    P L  L +  N+   E+ +  + 
Sbjct: 290 --LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 187 NSTTLTMLSLYDNSLT--GEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYFL 243
           N   L  L L  + +         L   S L  L+LS N+    L  +      +L+  L
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLEL-L 405

Query: 244 VLQ-NMFSGVLPDS-LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI 301
            L           S       L    +S++ L+ S  +    LP +  ++L  N F    
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 302 ---ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKK 358
               N++     L  L +    +S            +  +DLS N L+      + +LK 
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 359 LNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL--LPNSINFSNNRL 416
           + L  L SN ++  +P+ L  L     ++L  N L        C           +  +L
Sbjct: 526 IYLN-LASNHISIILPSLLPILSQQRTINLRQNPLDC-----TCSNIYFLEWYKENMQKL 579

Query: 417 SGP 419
              
Sbjct: 580 EDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  121 bits (306), Expect = 8e-29
 Identities = 41/246 (16%), Positives = 78/246 (31%), Gaps = 29/246 (11%)

Query: 188 STTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN 247
                  +  +  L  E+P  L        L+ S N L                      
Sbjct: 11  KEVNKTYNCENLGLN-EIPGTLPNS--TECLEFSFNVLPT-------------------- 47

Query: 248 MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGN 307
               +   + +R  NL    ++   +     +   S   +  + L+ N         +  
Sbjct: 48  ----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 308 ARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSN 367
            + L  LF  +  IS      ++   +L  + L  N +S          +KL +L  Q+N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 368 KLNSSIPNSLSSLKSLNV--LDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLI 425
            ++      +SSL+      L+L+ N + G  P +    +  S+NF   +    I   L 
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 426 KEGLVE 431
              +  
Sbjct: 224 NSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 3e-16
 Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 8/204 (3%)

Query: 1   MSFMYLTGTLPD--FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWK 58
           ++F  L        F  +  L+ L+LS++L           L  L+ L+   N   K   
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 59  LPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNL 118
              +S+  L +L I+VL+ C L      +  ++  +  ++L+ N +T      +  LK +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 119 RQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS 178
             L L  N  ++  +P  L  L++   +++  N L                 +     L 
Sbjct: 527 -YLNLASN-HISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFL----EWYKENMQKLE 580

Query: 179 GEISSVIANSTTLTMLSLYDNSLT 202
               ++  N   L  + L D +L+
Sbjct: 581 DTEDTLCENPPLLRGVRLSDVTLS 604

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  211 bits (540), Expect = 1e-62
 Identities = 85/298 (28%), Positives = 135/298 (45%), Gaps = 33/298 (11%)

Query: 516 RISFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           R + D  EI    +T   ++G G  GTVYK   + G+V AVK L      V+A    QLQ
Sbjct: 13  RDAADDWEIPDGQITVGQRIGSGSFGTVYKGKWH-GDV-AVKML-----NVTAPTPQQLQ 65

Query: 575 LDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
                K EV  L   RH NI+          L    +V ++    +L+  LH      + 
Sbjct: 66  A---FKNEVGVLRKTRHVNILLFMGYSTAPQLA---IVTQWCEGSSLYHHLHASETKFEM 119

Query: 633 PTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
                IA   A+G+ YLH      IIHRD+KS NI L  +   K+ DFG+A   ++R   
Sbjct: 120 KKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATE-KSRWSG 175

Query: 693 DSTTTVIAGTYGYLAPE---YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI 749
                 ++G+  ++APE      S+  + + DVY+FG+VL EL+TG+ P  +   +N++ 
Sbjct: 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN--INNRDQ 233

Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           I  +  +     G +     K+  +    M +++     C  K    RP+   ++  +
Sbjct: 234 IIEMVGR-----GSLSPDLSKVRSNCPKRMKRLMA---ECLKKKRDERPSFPRILAEI 283

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  208 bits (532), Expect = 3e-61
 Identities = 70/305 (22%), Positives = 113/305 (37%), Gaps = 43/305 (14%)

Query: 518 SFDQREI-LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQL 575
           S   R      +     +G+G  G   K+    +GEV+ +K+L          D +    
Sbjct: 1   SMPHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF-------DEETQ-- 51

Query: 576 DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
            +    EV+ +  + H N++K     Y         + EY+  G L   +        W 
Sbjct: 52  -RTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLN--FITEYIKGGTLRGIIKSMDSQYPWS 108

Query: 634 TRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ------ 687
            R   A  +A G+AYLH      IIHRD+ S N L+  N    VADFG+A+++       
Sbjct: 109 QRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP 165

Query: 688 -----ARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
                 +         + G   ++APE         K DV+SFG+VL E+I         
Sbjct: 166 EGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADP-- 223

Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
                    ++   +D    +   LD+       +       I +RC    P  RP+  +
Sbjct: 224 --------DYLPRTMDFGLNVRGFLDRYCP---PNCPPSFFPITVRCCDLDPEKRPSFVK 272

Query: 803 VVQLL 807
           +   L
Sbjct: 273 LEHWL 277

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  202 bits (515), Expect = 1e-58
 Identities = 67/304 (22%), Positives = 117/304 (38%), Gaps = 49/304 (16%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           I F+Q EI E       +G+G  G VY    + GEV A++ +      +   + DQL+  
Sbjct: 30  IPFEQLEIGE------LIGKGRFGQVYHGRWH-GEV-AIRLI-----DIERDNEDQLKA- 75

Query: 577 KGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
              K EV      RH+N+V     C         ++        L+  +    + LD   
Sbjct: 76  --FKREVMAYRQTRHENVVLFMGACMSPPHLA--IITSLCKGRTLYSVVRDAKIVLDVNK 131

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV--LQARGGK 692
             +IA  + +G+ YLH      I+H+D+KS N+  D N +  + DFG+  +  +   G +
Sbjct: 132 TRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRR 187

Query: 693 DSTTTVIAGTYGYLAPE---------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF 743
           +    +  G   +LAPE                +   DV++ G +  EL     P +   
Sbjct: 188 EDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQ- 246

Query: 744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV 803
              + II+ +            +    +     D       I + C +     RPT  ++
Sbjct: 247 -PAEAIIWQMG-----TGMKPNLSQIGMGKEISD-------ILLFCWAFEQEERPTFTKL 293

Query: 804 VQLL 807
           + +L
Sbjct: 294 MDML 297

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  201 bits (513), Expect = 2e-58
 Identities = 69/311 (22%), Positives = 117/311 (37%), Gaps = 47/311 (15%)

Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
             +G+G  G VYK  L+    VAVK         S ++          +  +  +  + H
Sbjct: 19  ELIGRGRYGAVYKGSLD-ERPVAVKVF-------SFANRQNFIN----EKNIYRVPLMEH 66

Query: 592 KNIVKLYCYFSSLYCN-----LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            NI +       +  +     LLV EY PNG+L   L       DW +  ++A  V +GL
Sbjct: 67  DNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGL 124

Query: 647 AYLHHGLLS------PIIHRDIKSTNILLDVNYQPKVADFGIAKV-----LQARGGKDST 695
           AYLH  L         I HRD+ S N+L+  +    ++DFG++       L   G +D+ 
Sbjct: 125 AYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNA 184

Query: 696 TTVIAGTYGYLAPEYAYSS-------KATTKCDVYSFGVVLMELITGRKPVEDDFGDNK- 747
                GT  Y+APE    +        A  + D+Y+ G++  E+      +       + 
Sbjct: 185 AISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEY 244

Query: 748 NIIYWVSIKVDTKEGIME--VLDKKLSGSFRDE-------MIQVLRIAIRCTSKSPATRP 798
            + +   +        M+  V  +K    F +        +  +      C  +    R 
Sbjct: 245 QMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARL 304

Query: 799 TMNEVVQLLAE 809
           T     + +AE
Sbjct: 305 TAQXAEERMAE 315

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  198 bits (506), Expect = 4e-58
 Identities = 64/298 (21%), Positives = 116/298 (38%), Gaps = 46/298 (15%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           I F Q   L       K+ +  SG ++K     G  + VK L  +        + +   D
Sbjct: 7   IDFKQLNFLT------KLNENHSGELWKGRWQ-GNDIVVKVLKVRD------WSTRKSRD 53

Query: 577 KGLKTEVETLGNIRHKNIVKLY-CYFSSLYCNL-LVYEYMPNGNLWDALHKGL-VHLDWP 633
                E   L    H N++ +     S    +  L+  +MP G+L++ LH+G    +D  
Sbjct: 54  --FNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQS 111

Query: 634 TRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD 693
              K A  +A+G+A+LH  L   I    + S ++++D +   +++   +    Q+ G   
Sbjct: 112 QAVKFALDMARGMAFLHT-LEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGR-- 168

Query: 694 STTTVIAGTYGYLAPE---YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
                      ++APE              D++SF V+L EL+T   P  D         
Sbjct: 169 ------MYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFAD--------- 213

Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI-RCTSKSPATRPTMNEVVQLL 807
                 +   E  M+V  + L  +    +   +   +  C ++ PA RP  + +V +L
Sbjct: 214 ------LSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPIL 265

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  196 bits (501), Expect = 5e-57
 Identities = 76/313 (24%), Positives = 125/313 (39%), Gaps = 40/313 (12%)

Query: 521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           QR +   +T    VG+G  G V++     GE VAVK   S+       D      +    
Sbjct: 3   QRTVARDITLLECVGKGRYGEVWRGSWQ-GENVAVKIFSSR-------DEKSWFRET--- 51

Query: 581 TEVETLGNIRHKNIVKLY--CYFSSLYCN--LLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
            E+     +RH+NI+        S        L+  Y   G+L+D L      LD  +  
Sbjct: 52  -ELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLT--TLDTVSCL 108

Query: 637 KIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVL-QARG 690
           +I   +A GLA+LH  +        I HRD+KS NIL+  N Q  +AD G+A +  Q+  
Sbjct: 109 RIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTN 168

Query: 691 GKDSTTTVIAGTYGYLAPE------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
             D       GT  Y+APE            +  + D+++FG+VL E+        +   
Sbjct: 169 QLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVS--NGIV 226

Query: 745 DNKNIIY--WVSIKVDTKEGIMEVLDKKL-----SGSFRDEMIQVLRIAI-RCTSKSPAT 796
           ++    +   V      ++    V   +      +  F D  +  L   +  C  ++P+ 
Sbjct: 227 EDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSA 286

Query: 797 RPTMNEVVQLLAE 809
           R T   + + L +
Sbjct: 287 RLTALRIKKTLTK 299

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  196 bits (499), Expect = 3e-56
 Identities = 80/329 (24%), Positives = 130/329 (39%), Gaps = 45/329 (13%)

Query: 503 SSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQR 562
           S S  P  V    R    Q ++++      ++G+G  G V+      GE VAVK  ++  
Sbjct: 23  SGSGLPLLV---QRTIAKQIQMVK------QIGKGRYGEVWMGKWR-GEKVAVKVFFTTE 72

Query: 563 TKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCN--LLVYEYMPNGN 618
                            +TE+     +RH+NI+         +       L+ +Y  NG+
Sbjct: 73  EA-----------SWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGS 121

Query: 619 LWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNY 673
           L+D L      LD  +  K+A+    GL +LH  + S      I HRD+KS NIL+  N 
Sbjct: 122 LYDYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNG 179

Query: 674 QPKVADFGIAKVLQARGGK-DSTTTVIAGTYGYLAPE------YAYSSKATTKCDVYSFG 726
              +AD G+A    +   + D       GT  Y+ PE           ++    D+YSFG
Sbjct: 180 TCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFG 239

Query: 727 VVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKL-----SGSFRDEMIQ 781
           ++L E+                    V      ++    V  KKL     +    DE ++
Sbjct: 240 LILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLR 299

Query: 782 VLR-IAIRCTSKSPATRPTMNEVVQLLAE 809
            +  +   C + +PA+R T   V + LA+
Sbjct: 300 QMGKLMTECWAHNPASRLTALRVKKTLAK 328

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  193 bits (493), Expect = 2e-55
 Identities = 76/315 (24%), Positives = 131/315 (41%), Gaps = 40/315 (12%)

Query: 519 FDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
             QR I   +  +  +G+G  G V++     GE VAVK   S+       +    +    
Sbjct: 35  LVQRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR------EERSWFR---- 83

Query: 579 LKTEVETLGNIRHKNIVKLYCY---FSSLYCNL-LVYEYMPNGNLWDALHKGLVHLDWPT 634
            + E+     +RH+NI+         +  +  L LV +Y  +G+L+D L++    +    
Sbjct: 84  -EAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEG 140

Query: 635 RHKIAFGVAQGLAYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVL-QA 688
             K+A   A GLA+LH  ++       I HRD+KS NIL+  N    +AD G+A     A
Sbjct: 141 MIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA 200

Query: 689 RGGKDSTTTVIAGTYGYLAPE------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
               D       GT  Y+APE           ++  + D+Y+ G+V  E+          
Sbjct: 201 TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSI--GG 258

Query: 743 FGDNKNIIYWVSIKVDTKEGIME--VLDKKL-----SGSFRDEMIQVLR-IAIRCTSKSP 794
             ++  + Y+  +  D     M   V ++KL     +     E ++V+  I   C   + 
Sbjct: 259 IHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANG 318

Query: 795 ATRPTMNEVVQLLAE 809
           A R T   + + L++
Sbjct: 319 AARLTALRIKKTLSQ 333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (482), Expect = 2e-51
 Identities = 90/446 (20%), Positives = 144/446 (32%), Gaps = 34/446 (7%)

Query: 1   MSFMYLTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKL 59
           +SF  L       FS    L+ LDLS          +   L +L  L    N    +   
Sbjct: 39  LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN---PIQSF 95

Query: 60  PESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITG-HIPPEIGLLKNL 118
              S   LT L  +V     L       IG + +L  L +  NFI    +P     L NL
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155

Query: 119 RQLELYYNQQLAGTIPEELGNLTELTD----LDMSVNHLSGKIPESILRLPKLRVLQLYN 174
             ++L YN  +      +L  L E       LDMS+N +   I +   +  KL  L L  
Sbjct: 156 VHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRG 213

Query: 175 NSLSGEI-SSVIANSTTLTMLSLYDNSLTGEVPQDLGQ--------WSPLVVLDLSENKL 225
           N  S  I  + + N   L +  L       E   ++ +           +    L+    
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 226 SGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLP 285
                 K      +    +       +  + + +        +    L+   P   L LP
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLK-QFPT--LDLP 328

Query: 286 HVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPS--EIYRAISLVKIDLSDN 343
            +  + L+ N  S           +LS L + RN +S             SL  +DLS N
Sbjct: 329 FLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 344 LLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNS-LSSLKSLNVLDLSNNLLTGYIPESLC 402
                + +    L++L  L  Q + L      S   SL+ L  LD+S             
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 403 ELLPN--SINFSNNRLSGPIPLSLIK 426
             L +  ++  + N        ++  
Sbjct: 446 G-LTSLNTLKMAGNSFKDNTLSNVFA 470

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  184 bits (470), Expect = 7e-50
 Identities = 71/431 (16%), Positives = 134/431 (31%), Gaps = 32/431 (7%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFR-LTKLR 71
           FS + +L  L              +  L  L+ L+   N    +      + F  LT L 
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN---FIHSCKLPAYFSNLTNLV 156

Query: 72  IMVLATCALHGQIPASIGNVTSLTD----LELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
            + L+   +       +  +         L+++ N I   I  +      L +L L  N 
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNF 215

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILR------LPKLRVLQLY--NNSLSG 179
             +  +   L NL  L    + +     +    I        L  + + +      +   
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 180 EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKL 239
           +          ++ +SL   S+     +D+ +      L +   +L    P        L
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ-FPTLDLPF--L 330

Query: 240 QYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPE--GILSLPHVSIIDLSYNSF 297
           +   +  N  S  +        +L    +S N L  S       L    +  +DLS+N  
Sbjct: 331 KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 298 SGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI-SLVKIDLSDNLLSGPIPSGIGNL 356
              ++        L  L  Q + +        + ++  L+ +D+S              L
Sbjct: 389 II-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 357 KKLNLLMLQSNKLNSSIP-NSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSN 413
             LN L +  N    +   N  ++  +L  LDLS   L   I   + + L     +N S+
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSH 506

Query: 414 NRLSGPIPLSL 424
           N L        
Sbjct: 507 NNLLFLDSSHY 517

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (453), Expect = 1e-47
 Identities = 82/427 (19%), Positives = 137/427 (32%), Gaps = 37/427 (8%)

Query: 12  DFSPMQNLR----RLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRL 67
           D   ++        LD+S N          F    L  L+   N  F    + ++ +  L
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGN--FNSSNIMKTCLQNL 228

Query: 68  TKLRIMVLATCALHGQIPASIGN--------VTSLTDLELTGNFITGHIPPEIGLLKNLR 119
             L +  L       +    I            ++ +  LT          +   L N+ 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 120 QLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG 179
            + L           E++    +   L +    L          LP L+ L L  N  S 
Sbjct: 289 AMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKGS- 341

Query: 180 EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSP--LVVLDLSENKLSGPLPAKVCSRG 237
            IS       +L+ L L  N+L+              L  LDLS N     + A      
Sbjct: 342 -ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399

Query: 238 KLQYFLVLQ-NMFSGVLPDS-LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYN 295
           +LQ+ L  Q +    V   S     + LL   +S  + +       L L  ++ + ++ N
Sbjct: 400 ELQH-LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 296 SFSGPI-ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIG 354
           SF     +N   N  NL+ L + + Q+             L  +++S N L     S   
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 355 NLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL--LPNSINFS 412
            L  L+ L    N++ +S        KSL   +L+NN +       +CE       +   
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA-----CICEHQKFLQWVKEQ 573

Query: 413 NNRLSGP 419
              L   
Sbjct: 574 KQFLVNV 580

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  175 bits (445), Expect = 2e-46
 Identities = 80/423 (18%), Positives = 140/423 (33%), Gaps = 35/423 (8%)

Query: 22  LDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALH 81
               +   + + P  +   ++ + +  + N    L  L   S    ++L+ + L+ C + 
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFN---PLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 82  GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLT 141
                +   +  L++L LTGN I    P     L +L  L      +LA      +G L 
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLI 128

Query: 142 ELTDLDMSVNHLSG-KIPESILRLPKLRVLQLYNNSLSGEISSVIAN----STTLTMLSL 196
            L  L+++ N +   K+P     L  L  + L  N +     + +            L +
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYFLVLQNMFSG---- 251
             N +   +     Q   L  L L  N  S  +          L    ++   F      
Sbjct: 189 SLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 252 --VLPDSLARCKNL--LRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGN 307
               P  +    ++    FR++  +           L +VS + L+  S           
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP--K 305

Query: 308 ARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSN 367
                 L + R Q+  F   ++     L  + L+ N  S  I      L  L+ L L  N
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDLP---FLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRN 360

Query: 368 KLNSSIPNSLSSLK--SLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLS 423
            L+ S   S S L   SL  LDLS N     +  +    L     ++F ++ L      S
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMG-LEELQHLDFQHSTLKRVTEFS 418

Query: 424 LIK 426
              
Sbjct: 419 AFL 421

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (393), Expect = 9e-40
 Identities = 55/356 (15%), Positives = 112/356 (31%), Gaps = 24/356 (6%)

Query: 82  GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLT 141
           G +   I  V ++T  +     ++  +P    +  + + ++L +N  L         N +
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPD--DIPSSTKNIDLSFNP-LKILKSYSFSNFS 56

Query: 142 ELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSL 201
           EL  LD+S   +     ++   L  L  L L  N +        +  T+L  L   +  L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 202 TGEVPQDLGQWSPLVVLDLSENKLSG-PLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARC 260
                  +GQ   L  L+++ N +    LPA   +   L +  +  N    +  + L   
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 261 KNLLRFRV----SNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNA-RNLSELF 315
           +   +  +    S N ++  I +       +  + L  N  S  I  T       L    
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 316 MQRNQISGFIPSEI--------YRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSN 367
           +   +       EI           +++ +  L+              L  ++ + L   
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 368 KLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLS 423
            +       +        L +    L  +    L  L   S+  + N+ S      
Sbjct: 296 SIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL--KSLTLTMNKGSISFKKV 347

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (304), Expect = 1e-28
 Identities = 43/221 (19%), Positives = 76/221 (34%), Gaps = 7/221 (3%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFT--GQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFR 66
                  + +L  LDLS N  +  G    S     +L  L  + N       +  +    
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSAN-FMG 397

Query: 67  LTKLRIMVLATCALHGQIPAS-IGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYY 125
           L +L+ +      L      S   ++  L  L+++              L +L  L++  
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 126 NQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
           N     T+     N T LT LD+S   L          L +L++L + +N+L    SS  
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
               +L+ L    N +             L   +L+ N ++
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  179 bits (456), Expect = 5e-49
 Identities = 86/430 (20%), Positives = 160/430 (37%), Gaps = 36/430 (8%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           +   + +    +  L     T     +  +L  +  L  +      +       +  L  
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI-----DGVEYLNN 69

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQL 129
           L  +  +   L    P  + N+T L D+ +  N I       +  L NL  L L+ NQ  
Sbjct: 70  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI- 124

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
             T  + L NLT L  L++S N +S     ++  L  L+ L   N          +AN T
Sbjct: 125 --TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLT 177

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMF 249
           TL  L +  N ++      L + + L  L  + N++S   P  + +   L    +  N  
Sbjct: 178 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQL 233

Query: 250 SGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR 309
             +   +LA   NL    ++NN +    P  +  L  ++ + L  N  S      +    
Sbjct: 234 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287

Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKL 369
            L+ L +  NQ+    P  I    +L  + L  N +S   P  + +L KL  L   +NK+
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

Query: 370 NSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGL 429
           +    +SL++L ++N L   +N ++   P +    +   +  ++   +           +
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISDLTPLANLTRI-TQLGLNDQAWTNAPVNYKANVSI 400

Query: 430 VESFSGNPGL 439
             +     G 
Sbjct: 401 PNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  174 bits (443), Expect = 2e-47
 Identities = 99/412 (24%), Positives = 165/412 (40%), Gaps = 36/412 (8%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
           ++     + NL +++ SNN  T   PL   NLT L  +  N N   ++  +    +  LT
Sbjct: 60  SIDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNN---QIADITP--LANLT 112

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
            L  + L    +    P  + N+T+L  LEL+ N I+      +  L +L+QL       
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV- 167

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
              T  + L NLT L  LD+S N +S      + +L  L  L   NN +S      +   
Sbjct: 168 ---TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGIL 220

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
           T L  LSL  N L       L   + L  LDL+ N++S   P    +  KL    +  N 
Sbjct: 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQ 276

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNA 308
            S +    LA    L    ++ N LE   P  I +L +++ + L +N+ S      V + 
Sbjct: 277 ISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330

Query: 309 RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK 368
             L  LF   N++S    S +    ++  +    N +S   P  + NL ++  L L    
Sbjct: 331 TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386

Query: 369 LNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLP-NSINFSNNRLSGP 419
             ++  N  +++   N +      L    P ++ +       + + N  S  
Sbjct: 387 WTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  173 bits (441), Expect = 5e-47
 Identities = 93/416 (22%), Positives = 162/416 (38%), Gaps = 36/416 (8%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
                + +  +  L            +    L NL  ++F+ N   +L  +    +  LT
Sbjct: 38  DTVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNN---QLTDITP--LKNLT 90

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
           KL  +++    +    P  + N+T+LT L L  N IT   P  +  L NL +LEL  N  
Sbjct: 91  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 146

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
              +    L  LT L  L            + +  L  L  L + +N +S    SV+A  
Sbjct: 147 ---SDISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDI--SVLAKL 198

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
           T L  L   +N ++   P  LG  + L  L L+ N+L         +   L    +  N 
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLT--NLTDLDLANNQ 254

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNA 308
            S + P  L+    L   ++  N +    P  +  L  ++ ++L+ N         + N 
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308

Query: 309 RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK 368
           +NL+ L +  N IS   P  +     L ++   +N +S    S + NL  +N L    N+
Sbjct: 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 369 LNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLS 423
           ++   P  L++L  +  L L++   T         + +PN++      L  P  +S
Sbjct: 365 ISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS 418

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (290), Expect = 2e-27
 Identities = 72/293 (24%), Positives = 119/293 (40%), Gaps = 23/293 (7%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
            +   + + NL  L  +NN  +   PL    LTNL+ LS N N   +L  +   ++  LT
Sbjct: 191 DISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGN---QLKDIG--TLASLT 243

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
            L  + LA   +    P  +  +T LT+L+L  N I+      +  L  L  LEL  NQ 
Sbjct: 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQ- 298

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
                   + NL  LT L +  N++S   P  +  L KL+ L  YNN +S    S +AN 
Sbjct: 299 --LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANL 352

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
           T +  LS   N ++   P  L   + +  L L++   +   P    +   +    V    
Sbjct: 353 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPN-TVKNVT 408

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI 301
            + + P +++   +     ++ N       E   +      I     +FSG +
Sbjct: 409 GALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 35/176 (19%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
            +   S ++NL  L L  N  +   P+S  +LT L+ L F  N   K+  +    +  LT
Sbjct: 301 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNN---KVSDVSS--LANLT 353

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
            +  +      +    P  + N+T +T L L     T   P       N+       N  
Sbjct: 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNY--KANVSIPNTVKNVT 408

Query: 129 LAGTIPEELGNLTELTDLDMSVNHL-----------------------SGKIPESI 161
            A   P  + +    T+ D++ N                         SG + + +
Sbjct: 409 GALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  174 bits (444), Expect = 1e-48
 Identities = 81/385 (21%), Positives = 137/385 (35%), Gaps = 53/385 (13%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           +   + +    R  L     T         L ++  L        K+  +    I  LT 
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGE---KVASIQG--IEYLTN 67

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQL 129
           L  + L    +    P  + N+  LT+L +  N IT      +  L NLR+L L  +   
Sbjct: 68  LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNI- 122

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
             +    L NLT++  L++  NH        +  +  L  L +  + +     + IAN T
Sbjct: 123 --SDISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLT 177

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMF 249
            L  LSL  N +    P  L   + L       N+++                       
Sbjct: 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD---------------------- 213

Query: 250 SGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR 309
                  +A    L   ++ NN +    P  + +L  ++ +++  N  S    N V +  
Sbjct: 214 ----ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265

Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKL 369
            L  L +  NQIS    S +     L  + L++N L       IG L  L  L L  N +
Sbjct: 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 370 NSSIPNSLSSLKSLNVLDLSNNLLT 394
               P  L+SL  ++  D +N ++ 
Sbjct: 324 TDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  170 bits (432), Expect = 7e-47
 Identities = 84/400 (21%), Positives = 153/400 (38%), Gaps = 56/400 (14%)

Query: 19  LRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATC 78
              L          FP +  +L         +     +      +   L  +  +V+A  
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDV-----VTQEELESITKLVVAGE 54

Query: 79  ALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELG 138
            +   I   I  +T+L  L L GN IT   P  +  L  L  L +  N+    T    L 
Sbjct: 55  KVA-SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI---TDISALQ 107

Query: 139 NLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYD 198
           NLT L +L ++ +++S   P  +  L K+  L L  N    ++S  ++N T L  L++ +
Sbjct: 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTE 164

Query: 199 NSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLA 258
           + +       +   + L  L L+ N++                               LA
Sbjct: 165 SKVKD--VTPIANLTDLYSLSLNYNQIEDI--------------------------SPLA 196

Query: 259 RCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQR 318
              +L  F    N +    P  + ++  ++ + +  N  +      + N   L+ L +  
Sbjct: 197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252

Query: 319 NQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLS 378
           NQIS    + +     L  +++  N +S    S + NL +LN L L +N+L +     + 
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 379 SLKSLNVLDLSNNLLTGYIP-ESLCELLPNSINFSNNRLS 417
            L +L  L LS N +T   P  SL ++  +S +F+N  + 
Sbjct: 309 GLTNLTTLFLSQNHITDIRPLASLSKM--DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (345), Expect = 2e-35
 Identities = 63/331 (19%), Positives = 116/331 (35%), Gaps = 49/331 (14%)

Query: 94  LTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHL 153
              L      I   I P    L    +  L        T       L  +T L ++   +
Sbjct: 2   AATLATLPAPIN-QIFP-DADLAEGIRAVLQKAS---VTDVVTQEELESITKLVVAGEKV 56

Query: 154 SGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWS 213
           +    + I  L  L  L L  N ++    S ++N   LT L +  N +T      L   +
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLT 110

Query: 214 PLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHL 273
            L  L L+E+ +S                              LA    +    +  NH 
Sbjct: 111 NLRELYLNEDNISDI--------------------------SPLANLTKMYSLNLGANHN 144

Query: 274 EGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI 333
             S    + ++  ++ + ++ +         + N  +L  L +  NQI    P  +    
Sbjct: 145 L-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLT 199

Query: 334 SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLL 393
           SL       N ++   P  + N+ +LN L + +NK+    P  L++L  L  L++  N +
Sbjct: 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255

Query: 394 TGYIP-ESLCELLPNSINFSNNRLSGPIPLS 423
           +     + L +L    +N  +N++S    L+
Sbjct: 256 SDINAVKDLTKL--KMLNVGSNQISDISVLN 284

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (287), Expect = 1e-27
 Identities = 60/225 (26%), Positives = 91/225 (40%), Gaps = 18/225 (8%)

Query: 2   SFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPE 61
              +    L   S M  L  L ++ +      P++  NLT+L  LS N N   ++  +  
Sbjct: 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYN---QIEDI-- 192

Query: 62  SSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQL 121
           S +  LT L         +    P  + N+T L  L++  N IT   P  +  L  L  L
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248

Query: 122 ELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEI 181
           E+  NQ    +    + +LT+L  L++  N +S      +  L +L  L L NN L  E 
Sbjct: 249 EIGTNQI---SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 182 SSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
             VI   T LT L L  N +T   P  L   S +   D +   + 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  169 bits (430), Expect = 9e-45
 Identities = 87/446 (19%), Positives = 151/446 (33%), Gaps = 49/446 (10%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKL 70
            F     L+ LDLS            + +L++L  L    N    +  L   +   L+ L
Sbjct: 47  SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN---PIQSLALGAFSGLSSL 102

Query: 71  RIMVLATCALHGQIPASIGNVTSLTDLELTGNFIT-GHIPPEIGLLKNLRQLELYYNQQL 129
           + +V     L       IG++ +L +L +  N I    +P     L NL  L+L  N ++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KI 161

Query: 130 AGTIPEELGNLTELT----DLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS-V 184
                 +L  L ++      LD+S+N ++  I     +  +L  L L NN  S  +    
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 185 IANSTTLTMLSLYDNSLTGEVPQ---DLGQWSPLVVLDLSENKLSG------PLPAKVCS 235
           I     L +  L       E      D      L  L + E +L+        +      
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 236 RGKLQYFLVLQNMFSGVLPDSLAR-------------------CKNLLRFRVSNNHLEGS 276
              +  F ++      V   S                       K+L R   ++N    +
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 277 IPEGILSLPHVSIIDLSYN--SFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAIS 334
             E  + LP +  +DLS N  SF G  + +     +L  L +  N +   + S       
Sbjct: 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 335 LVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLL 393
           L  +D   + L       +  +L+ L  L +       +     + L SL VL ++ N  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 394 TGYIPESLCELLPN--SINFSNNRLS 417
                  +   L N   ++ S  +L 
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (421), Expect = 1e-43
 Identities = 82/443 (18%), Positives = 157/443 (35%), Gaps = 48/443 (10%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
           + + LDLS N        S F+   L+VL  +     ++  + + +   L+ L  ++L  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTG 85

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL 137
             +      +   ++SL  L      +       IG LK L++L + +N   +  +PE  
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 138 GNLTELTDLDMSVNHLSGKIPESILRLPKLRV----LQLYNNSLSGEISSVIANSTTLTM 193
            NLT L  LD+S N +       +  L ++ +    L L  N ++  I         L  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHK 204

Query: 194 LSLYDNSLTGEVPQD-LGQWSPLVVLDLSENK---------LSGPLPAKVCSRGKLQYFL 243
           L+L +N  +  V +  +   + L V  L   +                 +C+    ++ L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 244 VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGI--------------------LS 283
              + +   + D      N+  F + +  +E  + +                      L 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 284 LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQIS--GFIPSEIYRAISLVKIDLS 341
           L  +  +  + N      +    +  +L  L + RN +S  G      +   SL  +DLS
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 342 DNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNS-LSSLKSLNVLDLSNNLLTGYIPES 400
            N +   + S    L++L  L  Q + L      S   SL++L  LD+S+          
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNG 439

Query: 401 LCELLPN--SINFSNNRLSGPIP 421
           +   L +   +  + N       
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (412), Expect = 2e-42
 Identities = 77/446 (17%), Positives = 143/446 (32%), Gaps = 51/446 (11%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFR-LTKLR 71
           FS + +L++L              + +L  L+ L+   N    +        F  LT L 
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN---LIQSFKLPEYFSNLTNLE 152

Query: 72  IMVLATCALHGQIPASIGNVTSLT----DLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
            + L++  +       +  +  +      L+L+ N +   I P       L +L L  N 
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNF 211

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSG-----KIPESIL-RLPKLRVLQLYNNSLSG-- 179
                +   +  L  L    + +          K  +S L  L  L + +     L    
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 180 -EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSP--------------------LVVL 218
            +I  +    T ++  SL   ++   V      +                      L  L
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 219 DLSENKLSGPLPAKVCSRGKLQYFLVLQN---MFSGVLPDSLARCKNLLRFRVSNNHLEG 275
             + NK              L++ L L      F G    S     +L    +S N +  
Sbjct: 331 TFTSNKGGNAFSEVDLP--SLEF-LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 276 SIPEGILSLPHVSIIDLSYNSFSG-PIANTVGNARNLSELFMQRNQISGFIPSEIYRAIS 334
           ++    L L  +  +D  +++       +   + RNL  L +                 S
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 335 LVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLL 393
           L  + ++ N         I   L+ L  L L   +L    P + +SL SL VL++++N L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 394 TGYIPESLCELLPN--SINFSNNRLS 417
              +P+ + + L +   I    N   
Sbjct: 507 K-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (347), Expect = 4e-34
 Identities = 72/394 (18%), Positives = 129/394 (32%), Gaps = 47/394 (11%)

Query: 12  DFSPMQNLR----RLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRL 67
           D   +  +      LDLS N          F    L  L+   N  F    + ++ I  L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNN--FDSLNVMKTCIQGL 224

Query: 68  TKLRIMVLATCALHGQI------PASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQL 121
             L +  L       +        +++  + +LT  E    ++  ++   I L   L  +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 122 ELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEI 181
             +    +     ++         L++         P   L+L  L+ L   +N      
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAF 341

Query: 182 SSVIANSTTLTMLSLYDNSLT--GEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKL 239
           S V  +  +L  L L  N L+  G   Q     + L  LDLS N +              
Sbjct: 342 SEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI------------- 386

Query: 240 QYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSFS 298
                        +  +    + L      +++L+      +  SL ++  +D+S+    
Sbjct: 387 ------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 299 GPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI-SLVKIDLSDNLLSGPIPSGIGNLK 357
                      +L  L M  N        +I+  + +L  +DLS   L    P+   +L 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 358 KLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN 391
            L +L + SN+L S        L SL  + L  N
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (323), Expect = 4e-31
 Identities = 63/371 (16%), Positives = 124/371 (33%), Gaps = 41/371 (11%)

Query: 83  QIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTE 142
           +IP ++    S  +L+L+ N +             L+ L+L    ++         +L+ 
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSH 77

Query: 143 LTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT 202
           L+ L ++ N +      +   L  L+ L     +L+   +  I +  TL  L++  N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 203 -GEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYF---LVLQNMFSGVLPDSLA 258
             ++P+     + L  LDLS NK+       +    ++      L L       +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 259 RCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSG------PIANTVGNARNL 311
           +   L +  + NN    ++ +  +  L  + +  L    F           + +    NL
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 312 SELFMQRNQISGF---IPSEIYRAISLVKIDLSDNLLSG-PIPSGIGNLKKLNL------ 361
           +    +   +  +   I        ++    L    +      S     + L L      
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 362 ------------LMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT--GYIPESLCELLP- 406
                       L   SNK  ++   S   L SL  LDLS N L+  G   +S       
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 407 NSINFSNNRLS 417
             ++ S N + 
Sbjct: 376 KYLDLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (317), Expect = 3e-30
 Identities = 77/369 (20%), Positives = 125/369 (33%), Gaps = 44/369 (11%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGF---KLWKLPESSIFRLTKLRIM 73
            L +L L NN  +     +    L  LEV             L K  +S++  L  L I 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 74  VLATCALHG---QIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLA 130
                 L      I      +T+++   L    I   +          + LEL   +   
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKF-- 316

Query: 131 GTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS--GEISSVIANS 188
           G  P     L  L  L  + N       E  + LP L  L L  N LS  G  S     +
Sbjct: 317 GQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
           T+L  L L  N +   +  +      L  LD   + L            ++  F V  ++
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-----------QMSEFSVFLSL 420

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTV-G 306
                       +NL+   +S+ H       GI + L  + ++ ++ NSF       +  
Sbjct: 421 ------------RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 307 NARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS 366
             RNL+ L + + Q+    P+      SL  ++++ N L          L  L  + L +
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 367 NKLNSSIPN 375
           N  + S P 
Sbjct: 528 NPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (277), Expect = 2e-25
 Identities = 58/298 (19%), Positives = 99/298 (33%), Gaps = 40/298 (13%)

Query: 133 IPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLT 192
           IP+ L       +LD+S N L      S    P+L+VL L    +         + + L+
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 193 MLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV 252
            L L  N +           S L  L   E  L                        + +
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNL------------------------ASL 115

Query: 253 LPDSLARCKNLLRFRVSNNHL-EGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNL 311
               +   K L    V++N +    +PE   +L ++  +DLS N         +     +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 312 S----ELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSG-IGNLKKLNLLMLQ- 365
                 L +  N ++ FI    ++ I L K+ L +N  S  +    I  L  L +  L  
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 366 -----SNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSG 418
                   L     ++L  L +L + +     L  Y  + + +L     N S+  L  
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD-YYLDDIIDLFNCLTNVSSFSLVS 291

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.9 bits (244), Expect = 2e-21
 Identities = 46/258 (17%), Positives = 80/258 (31%), Gaps = 43/258 (16%)

Query: 8   GTLPDFSPMQNLRRLDLSNNLFT--GQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF 65
           G       + +L  LDLS N  +  G    S F  T+L+ L  + N              
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-------------- 383

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGL--LKNLRQLEL 123
            +                + ++   +  L  L+   + +   +        L+NL  L++
Sbjct: 384 GVI--------------TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDI 428

Query: 124 YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEIS 182
            +              L+ L  L M+ N         I   L  L  L L    L     
Sbjct: 429 SHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 183 SVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYF 242
           +   + ++L +L++  N L         + + L  + L  N          CS  ++ Y 
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD-------CSCPRIDYL 540

Query: 243 LVLQNMFSGVLPDSLARC 260
               N  S     S A+C
Sbjct: 541 SRWLNKNSQKEQGS-AKC 557

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.7 bits (241), Expect = 6e-21
 Identities = 47/236 (19%), Positives = 82/236 (34%), Gaps = 32/236 (13%)

Query: 196 LYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD 255
             + +   ++P +L        LDLS N L                          +   
Sbjct: 14  CMELNFY-KIPDNLPFS--TKNLDLSFNPLRH------------------------LGSY 46

Query: 256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELF 315
           S      L    +S   ++        SL H+S + L+ N              +L +L 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 316 MQRNQISGFIPSEIYRAISLVKIDLSDNLL-SGPIPSGIGNLKKLNLLMLQSNKLNSSIP 374
                ++      I    +L +++++ NL+ S  +P    NL  L  L L SNK+ S   
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 375 NSLSSLKSLNV----LDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIK 426
             L  L  + +    LDLS N +    P +  E+  + +   NN  S  +  + I+
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 1e-15
 Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 32/187 (17%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKL 59
           +SF  +     +F  ++ L  LD  ++        SVF +L NL  L  +          
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT---HTRVA 436

Query: 60  PESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNL 118
                  L+ L +                        L++ GN    +  P+I   L+NL
Sbjct: 437 FNGIFNGLSSLEV------------------------LKMAGNSFQENFLPDIFTELRNL 472

Query: 119 RQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSL 177
             L+L    QL    P    +L+ L  L+M+ N L   +P+ I  RL  L+ + L+ N  
Sbjct: 473 TFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

Query: 178 SGEISSV 184
                 +
Sbjct: 531 DCSCPRI 537

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score =  162 bits (411), Expect = 1e-44
 Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 40/282 (14%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G+G   TVYK +D  +   VA  +L  Q  K++ S+  + +       E E L  ++H
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCEL--QDRKLTKSERQRFK------EEAEMLKGLQH 84

Query: 592 KNIVKLY-CYFSSLYCNLLVY---EYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
            NIV+ Y  + S++     +    E M +G L   L +    +           + +GL 
Sbjct: 85  PNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQ 143

Query: 648 YLH-HGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           +LH      PIIHRD+K  NI +       K+ D G+A + +A   K      + GT  +
Sbjct: 144 FLHTRT--PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKA-----VIGTPEF 196

Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           +APE  Y  K     DVY+FG+ ++E+ T   P  +    N   IY    +  T      
Sbjct: 197 MAPEM-YEEKYDESVDVYAFGMCMLEMATSEYPYSE--CQNAAQIY----RRVTSGVKPA 249

Query: 766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
             DK      ++       I   C  ++   R +   +  LL
Sbjct: 250 SFDKVAIPEVKE-------IIEGCIRQNKDERYS---IKDLL 281

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (409), Expect = 3e-42
 Identities = 71/408 (17%), Positives = 140/408 (34%), Gaps = 19/408 (4%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
            ++ LDLS N  T      +    NL+VL    +   ++  +   + + L  L  + L+ 
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS---RINTIEGDAFYSLGSLEHLDLSD 83

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITG-HIPPEIGLLKNLRQLELYYNQQLAGTIPEE 136
             L     +  G ++SL  L L GN      +      L NL+ L +   +  +     +
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 137 LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSL 196
              LT L +L++    L     +S+  +  +  L L+ +  +  +       +++  L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS 256
            D +L       L        +     + S                L L      +    
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD------ESFNELLKLLRYILELSEVE 257

Query: 257 LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFM 316
              C        + +  +     G +    +  + +        ++        +  + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 317 QRNQISGFIPSEIYRAISLVKIDLSDNLLS---GPIPSGIGNLKKLNLLMLQSNKLNS-- 371
           + +++     S      SL  +DLS+NL+        +  G    L  L+L  N L S  
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 372 SIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLS 417
                L +LK+L  LD+S N     +P+S C+       +N S+  + 
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDS-CQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (377), Expect = 4e-38
 Identities = 76/422 (18%), Positives = 154/422 (36%), Gaps = 44/422 (10%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFR-LTKL 70
           F  + +L  LDLS+N  +     S F  L++L+ L+   N       L  +S+F  LT L
Sbjct: 70  FYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGN---PYQTLGVTSLFPNLTNL 125

Query: 71  RIMVLATCALHGQIPA-SIGNVTSLTDLELTGNFITGHIPPE-IGLLKNLRQLELYYNQQ 128
           + + +       +I       +TSL +LE+    +  +   + +  ++++  L L+ + +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLS-E 183

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS-------GEI 181
            A  +      L+ +  L++   +L+      +        ++      S        E+
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 182 SSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQY 241
             ++     L+ +   D +L G             + D + ++              ++ 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNG-------------LGDFNPSESDVVSELGKVETVTIRR 290

Query: 242 FLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGP 300
             + Q      L    +  + + R  V N+ +   +P      L  +  +DLS N     
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 301 IANT---VGNARNLSELFMQRNQIS--GFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGN 355
                   G   +L  L + +N +         +    +L  +D+S N    P+P     
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 356 LKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNR 415
            +K+  L L S  +   +   +   ++L VLD+SNN L       L  L    +  S N+
Sbjct: 409 PEKMRFLNLSSTGI-RVVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRL--QELYISRNK 462

Query: 416 LS 417
           L 
Sbjct: 463 LK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (369), Expect = 5e-37
 Identities = 77/431 (17%), Positives = 168/431 (38%), Gaps = 42/431 (9%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
           F P+ +L+ L+L  N +      S+F NLTNL+ L           ++       LT L 
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE--TFSEIRRIDFAGLTSLN 151

Query: 72  IMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ--L 129
            + +   +L      S+ ++  +  L L  +     +     +L ++R LEL        
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

Query: 130 AGTIPEELGNLTELTDLDMSVNHLS----GKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
             +        + +  L    + L+     ++ + +  + +L  ++  + +L+G      
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 186 A-----------NSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVC 234
           +            + T+  L +    L  ++         +  + +  +K+   +P    
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFS 330

Query: 235 SR-GKLQYFLVL-QNMFSGVLPDS---LARCKNLLRFRVSNNHLE--GSIPEGILSLPHV 287
                L++ L L +N+       +        +L    +S NHL       E +L+L ++
Sbjct: 331 QHLKSLEF-LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 288 SIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSG 347
           + +D+S N+F  P+ ++      +  L +    I   + + I +  +L  +D+S+N L  
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNLDS 445

Query: 348 PIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN 407
                +  L++L +     NKL  ++P++ S    L V+ +S N L   +P+ + + L +
Sbjct: 446 -FSLFLPRLQELYI---SRNKL-KTLPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTS 498

Query: 408 --SINFSNNRL 416
              I    N  
Sbjct: 499 LQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  124 bits (312), Expect = 9e-30
 Identities = 69/363 (19%), Positives = 136/363 (37%), Gaps = 35/363 (9%)

Query: 83  QIPASIGNVTSLTDLELTGNFITGHIPPE-IGLLKNLRQLELYYNQQLAGTIPEE-LGNL 140
            IP+ +    ++  L+L+ N IT +I    +    NL+ L L  ++    TI  +   +L
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSL 73

Query: 141 TELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSG-EISSVIANSTTLTMLSLYD 198
             L  LD+S NHLS  +  S    L  L+ L L  N      ++S+  N T L  L + +
Sbjct: 74  GSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 199 NSLTGEVP-QDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSL 257
                E+   D    + L  L++    L       + S   + +  +  +  + +L    
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192

Query: 258 ARCKNLLRFRVSNNHLEGSIPEGI-----------LSLPHVSIIDLSYNSFSGPIANTVG 306
               ++    + + +L       +           L+     + D S+N     +   + 
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYIL 251

Query: 307 NARNLSELFMQRNQISGFIPSEI--------YRAISLVKIDLSDNLLSGPIPSGIGNLKK 358
               +       N +  F PSE            +++ ++ +    L   + +    L+K
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 359 LNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT--GYIPESLCELLPN--SINFSNN 414
           +  + ++++K+     +    LKSL  LDLS NL+        +     P+  ++  S N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 415 RLS 417
            L 
Sbjct: 372 HLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.3 bits (232), Expect = 7e-20
 Identities = 53/264 (20%), Positives = 100/264 (37%), Gaps = 24/264 (9%)

Query: 1   MSFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWK 58
           +   YL   L   +S ++ ++R+ + N+      P S   +L +LE L  +EN   + + 
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 59  LPESSIFRLTKLRIMVLATCALH--GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLK 116
              +       L+ +VL+   L    +    +  + +LT L+++ N     +P      +
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410

Query: 117 NLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS 176
            +R L L     +   +   +     L  LD+S N+L        L LP+L+ L +  N 
Sbjct: 411 KMRFLNLSSTG-IR-VVKTCI--PQTLEVLDVSNNNLD-SFS---LFLPRLQELYISRNK 462

Query: 177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR 236
           L   +    +    L ++ +  N L         + + L  + L  N          CS 
Sbjct: 463 LK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW-------DCSC 513

Query: 237 GKLQYFLVLQNMFSGVLPDSLARC 260
            ++ Y     N  S     S A+C
Sbjct: 514 PRIDYLSRWLNKNSQKEQGS-AKC 536

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 7/143 (4%)

Query: 282 LSLPHVSIIDLSYNSFSG-PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDL 340
           LS     + D    SF+  P   T      +  L +  N+I+     ++    +L  + L
Sbjct: 2   LSCDASGVCDGRSRSFTSIPSGLT----AAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 341 SDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPES 400
             + ++        +L  L  L L  N L+S   +    L SL  L+L  N        S
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 401 LCELLPN--SINFSNNRLSGPIP 421
           L   L N  ++   N      I 
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIR 140

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  156 bits (397), Expect = 3e-41
 Identities = 84/368 (22%), Positives = 135/368 (36%), Gaps = 62/368 (16%)

Query: 83  QIPASIGNVTSLTDLELTGNFITGHIPPEIG-------------LLKNLRQLELYYNQQL 129
           ++P    NV S T+     +    + PP  G             L +   +LEL      
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL- 83

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
             ++PE   +L     L  S N L+ ++PE    L  L V      +LS           
Sbjct: 84  -SSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL------ 132

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMF 249
            L  L + +N L  ++P +L   S L ++D+  N L   LP        L++     N  
Sbjct: 133 -LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQL 185

Query: 250 SGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR 309
              LP+ L     L      NN L+  +P+  LSL     I    N         + N  
Sbjct: 186 E-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILEEL--PELQNLP 237

Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKL 369
            L+ ++   N +   +P       SL  +++ DN L+  +P    +L  L++     + L
Sbjct: 238 FLTTIYADNNLLKT-LPDLP---PSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGL 292

Query: 370 NSSIP---------NSLSSL----KSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRL 416
           +   P         N + SL     SL  L++SNN L   +P     L    +  S N L
Sbjct: 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL--ERLIASFNHL 349

Query: 417 SGPIPLSL 424
           +  +P   
Sbjct: 350 AE-VPELP 356

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  150 bits (382), Expect = 3e-39
 Identities = 73/410 (17%), Positives = 139/410 (33%), Gaps = 65/410 (15%)

Query: 9   TLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRL 67
            +P     +++      + + +    P        + V    +                 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL--------------D 70

Query: 68  TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
            +   + L    L   +P    +   L  L  + N +T  +P     LK+L         
Sbjct: 71  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIAN 187
                + +    L     L +S N L  K+PE +     L+++ + NNSL  ++  +  +
Sbjct: 126 -----LSDLPPLLEY---LGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 188 STTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN 247
              L  ++  +N L  E+P +L     L  +    N L   LP    S   L+  +   N
Sbjct: 175 ---LEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDLPLS---LESIVAGNN 225

Query: 248 MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGN 307
           +        L     L      NN L+ ++P+   SL     +++  N  +  +     +
Sbjct: 226 ILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLTD-LPELPQS 278

Query: 308 ARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSN 367
              L       + +S   P       +L  ++ S N +   +     +L++LN   + +N
Sbjct: 279 LTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRS-LCDLPPSLEELN---VSNN 327

Query: 368 KLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLS 417
           KL   +P     L+    L  S N L   +PE    L    ++   N L 
Sbjct: 328 KL-IELPALPPRLE---RLIASFNHLA-EVPELPQNL--KQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  146 bits (371), Expect = 8e-38
 Identities = 82/419 (19%), Positives = 147/419 (35%), Gaps = 72/419 (17%)

Query: 16  MQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPES------------- 62
             +L  L  S N  T + P    +L +L V + N      L  LP               
Sbjct: 90  PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK---ALSDLPPLLEYLGVSNNQLEK 145

Query: 63  --SIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
              +   + L+I+ +   +L  ++P    +   L  +    N +     PE+  L  L  
Sbjct: 146 LPELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE--ELPELQNLPFLTA 199

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           +    N  L   +P+   +L  +       N L       +  LP L  +   NN L   
Sbjct: 200 IYADNNS-LK-KLPDLPLSLESI---VAGNNILE--ELPELQNLPFLTTIYADNNLLK-T 251

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           +  +  +   L  L++ DN LT ++P+     + L V +   + LS   P        L 
Sbjct: 252 LPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLY 300

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
           Y     N     L D      +L    VSNN L   +P     L     +  S+N  +  
Sbjct: 301 YLNASSNEIR-SLCDLP---PSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAE- 351

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
           +     N   L +L ++ N +    P       S+  + ++ +L    +P    NLK+L+
Sbjct: 352 VPELPQN---LKQLHVEYNPLR-EFPDIPE---SVEDLRMNSHLAE--VPELPQNLKQLH 402

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLS 417
           +   ++N L    P+   S++ L    +++  +     E   E         F ++   
Sbjct: 403 V---ETNPL-REFPDIPESVEDL---RMNSERVV-DPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  143 bits (363), Expect = 8e-37
 Identities = 74/362 (20%), Positives = 130/362 (35%), Gaps = 53/362 (14%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
            LP+      L+ +D+ NN    + P       +LE ++   N   +L +LPE  +  L 
Sbjct: 145 KLPELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNN---QLEELPE--LQNLP 195

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
            L  +     +L  ++P    +   L  +    N +     PE+  L  L  +    N  
Sbjct: 196 FLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE--ELPELQNLPFLTTIYADNNLL 249

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
              T+P+   +L  L   D   N+L+  +PE    L  L V +   + LS    +     
Sbjct: 250 --KTLPDLPPSLEALNVRD---NYLT-DLPELPQSLTFLDVSENIFSGLSELPPN----- 298

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
             L  L+   N +   +         L  L++S NKL   LPA      +L+  +   N 
Sbjct: 299 --LYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLIE-LPA---LPPRLERLIASFNH 348

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNA 308
            +  +P+     K L    V  N L    P+   S+      DL  NS    +       
Sbjct: 349 LA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQ-- 396

Query: 309 RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK 368
            NL +L ++ N +    P       S+  + ++   +  P         KL   + + + 
Sbjct: 397 -NLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 369 LN 370
            +
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (336), Expect = 3e-33
 Identities = 73/325 (22%), Positives = 120/325 (36%), Gaps = 48/325 (14%)

Query: 107 HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRL-- 164
            I P       L++   + +  L   +P E  N+   T+   + +      P        
Sbjct: 2   FINPRNVSNTFLQEPLRHSSN-LT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59

Query: 165 -----------PKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWS 213
                       +   L+L N  LS  +  +  +   L  L    NSLT E+P+      
Sbjct: 60  MAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLK 114

Query: 214 PLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHL 273
            L+V + +   LS   P        L+Y L + N     LP+ L     L    V NN L
Sbjct: 115 SLLVDNNNLKALSDLPP-------LLEY-LGVSNNQLEKLPE-LQNSSFLKIIDVDNNSL 165

Query: 274 EGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI 333
           +  +P+   SL     I    N         + N   L+ ++   N +   +P      +
Sbjct: 166 K-KLPDLPPSL---EFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLP---L 215

Query: 334 SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLL 393
           SL  I   +N+L       + NL  L  +   +N L  ++P+   SL++LN   + +N L
Sbjct: 216 SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALN---VRDNYL 269

Query: 394 TGYIPESLCELLPNSINFSNNRLSG 418
           T  +PE    L    ++ S N  SG
Sbjct: 270 TD-LPELPQSL--TFLDVSENIFSG 291

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  152 bits (385), Expect = 8e-41
 Identities = 52/377 (13%), Positives = 105/377 (27%), Gaps = 75/377 (19%)

Query: 16  MQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVL 75
                 L    +     +   +           N       W+   S+  ++       L
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH--SAWRQANSNNPQIETRTGRAL 68

Query: 76  ATCALHGQIPASIGNVTS--LTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTI 133
                       + + T      LEL    +    P +   L +L+ + +     L   +
Sbjct: 69  KA------TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-EL 119

Query: 134 PEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS----- 188
           P+ +     L  L ++ N L   +P SI  L +LR L +       E+   +A++     
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 189 ----TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
                 L  L L    +   +P  +     L  L +  + LS                  
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA----------------- 220

Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
                   L  ++     L    +       + P                          
Sbjct: 221 --------LGPAIHHLPKLEELDLRGCTALRNYPPIF----------------------- 249

Query: 305 VGNARNLSELFMQ-RNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLM 363
            G    L  L ++  + +   +P +I+R   L K+DL   +    +PS I  L    +++
Sbjct: 250 -GGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 364 LQSNKLNSSIPNSLSSL 380
           +  +       +   + 
Sbjct: 308 VPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  146 bits (371), Expect = 5e-39
 Identities = 53/372 (14%), Positives = 102/372 (27%), Gaps = 58/372 (15%)

Query: 63  SIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLE 122
                +    +              +       + +        H         N +   
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 123 LYYNQQLAGTIPEELGNLTE--LTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
                       + L + T+     L++    L  + P+   RL  L+ + +    L  E
Sbjct: 63  RTGRA--LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           +   +     L  L+L  N L   +P  +   + L  L +        LP  + S     
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD--- 174

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
                                NL   R+    +  S+P  I                   
Sbjct: 175 ------------ASGEHQGLVNLQSLRLEWTGIR-SLPASI------------------- 202

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
                 N +NL  L ++ + +S  +   I+    L ++DL         P   G    L 
Sbjct: 203 -----ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-----LPNSINFSNNR 415
            L+L+      ++P  +  L  L  LDL   +    +P  + +L     +    +     
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 416 LSGPIPLSLIKE 427
                P++   E
Sbjct: 317 DQ-HRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  137 bits (347), Expect = 8e-36
 Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 18/232 (7%)

Query: 9   TLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRL 67
             PD    + +L+ + +       + P ++     LE L+   N    L  LP S I  L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN---PLRALPAS-IASL 149

Query: 68  TKLRIMVLATCALHGQIPASIGNV---------TSLTDLELTGNFITGHIPPEIGLLKNL 118
            +LR + +  C    ++P  + +           +L  L L    I   +P  I  L+NL
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 119 RQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS 178
           + L++  +  L+  +   + +L +L +LD+         P        L+ L L + S  
Sbjct: 209 KSLKIRNSP-LS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 179 GEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLP 230
             +   I   T L  L L        +P  + Q     ++ +  +  +    
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  158 bits (401), Expect = 8e-41
 Identities = 67/332 (20%), Positives = 120/332 (36%), Gaps = 46/332 (13%)

Query: 92  TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVN 151
                L +  + +T  +P  +    ++  L +  N  L  ++P     L  L   ++S N
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LT-SLPALPPELRTL---EVSGN 91

Query: 152 HLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ 211
            L+  +P     L +L +       L    S        L  L ++ N LT  +P     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPPG 142

Query: 212 WSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNN 271
              L  L +S+N+L+  LPA       L       N  +  LP        L    VS+N
Sbjct: 143 ---LQELSVSDNQLAS-LPALPSE---LCKLWAYNNQLT-SLPMLP---SGLQELSVSDN 191

Query: 272 HLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYR 331
            L  S+P     L  +   +    S              L EL +  N+++  +P     
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRLTS-LPVLP-- 240

Query: 332 AISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN 391
              L ++ +S N L+  +P     L  L++     N+L + +P SL  L S   ++L  N
Sbjct: 241 -SELKELMVSGNRLTS-LPMLPSGLLSLSV---YRNQL-TRLPESLIHLSSETTVNLEGN 294

Query: 392 LLTGYIPESLCELLPNSINFSNNRLSGPIPLS 423
            L+          + ++  +S   +   +  +
Sbjct: 295 PLS-ERTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  143 bits (362), Expect = 7e-36
 Identities = 82/427 (19%), Positives = 139/427 (32%), Gaps = 75/427 (17%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
               L++  +  T   P  +    ++  L   +N               LT L       
Sbjct: 41  GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN--------------NLTSL------- 76

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL 137
                  PA       L  LE++GN +T  +P     L  L              +P   
Sbjct: 77  -------PALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH-----LPALP 120

Query: 138 GNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLY 197
             L +L    +  N L+  +P      P L+ L + +N L+  + ++ +    L  L  Y
Sbjct: 121 SGLCKL---WIFGNQLT-SLPVLP---PGLQELSVSDNQLA-SLPALPSE---LCKLWAY 169

Query: 198 DNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSL 257
           +N LT  +P        L  L +S+N+L+  LP       +L       N  +  LP   
Sbjct: 170 NNQLT-SLPMLPSG---LQELSVSDNQLAS-LPTLP---SELYKLWAYNNRLT-SLPALP 220

Query: 258 ARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQ 317
           +    L    VS N L  S+P     L     + +S N  +  +         L  L + 
Sbjct: 221 S---GLKELIVSGNRLT-SLPVLPSEL---KELMVSGNRLTS-LPMLPSG---LLSLSVY 269

Query: 318 RNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSL 377
           RNQ++  +P  +    S   ++L  N LS         L+++      S  +        
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ---ALREITSAPGYSGPIIRFDMAGA 325

Query: 378 SSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNP 437
           S+ +    L L+         E           F     +    L L +    E+F  + 
Sbjct: 326 SAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDA 385

Query: 438 GLCVSVS 444
           G    +S
Sbjct: 386 GFKAQIS 392

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (274), Expect = 6e-25
 Identities = 55/255 (21%), Positives = 90/255 (35%), Gaps = 34/255 (13%)

Query: 17  QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
             L +L +  N  T   P+    L  L  +S N     +L  LP      L KL      
Sbjct: 121 SGLCKLWIFGNQLT-SLPVLPPGLQELS-VSDN-----QLASLPA-LPSELCKLW---AY 169

Query: 77  TCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEE 136
              L   +P        L +L ++ N +   +P        L +L  Y N +L  ++P  
Sbjct: 170 NNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPS---ELYKLWAYNN-RLT-SLPAL 219

Query: 137 LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSL 196
              L E   L +S N L+  +P       +L+ L +  N L+  +  + +    L  LS+
Sbjct: 220 PSGLKE---LIVSGNRLTS-LPVLP---SELKELMVSGNRLT-SLPMLPSG---LLSLSV 268

Query: 197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS 256
           Y N LT  +P+ L   S    ++L  N LS     +               +   +   S
Sbjct: 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 257 LARCKNLLRFRVSNN 271
             R    L    ++ 
Sbjct: 327 APRETRALHLAAADW 341

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  155 bits (392), Expect = 2e-40
 Identities = 57/420 (13%), Positives = 142/420 (33%), Gaps = 28/420 (6%)

Query: 16  MQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMV 74
               +   ++++    Q   S+  +  N++ L  + N    L ++  + +   TKL ++ 
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---PLSQISAADLAPFTKLELLN 64

Query: 75  LATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP 134
           L++  L+      + ++++L  L+L  N++      E+ +  ++  L    N      + 
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN--ISRVS 115

Query: 135 EELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG-EISSVIANSTTLTM 193
                     ++ ++ N ++           +++ L L  N +     + + A+S TL  
Sbjct: 116 CS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 194 LSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVL 253
           L+L  N +  +V   +  ++ L  LDLS NKL+  +  +  S   + +  +  N    ++
Sbjct: 174 LNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 254 PDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSE 313
             +L   +NL  F +  N              +  +  ++  +               + 
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 314 LFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSG----PIPSGIGNLKKLNLLMLQSNKL 369
                            R I+L + + +     G     +     N  +   +     + 
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 370 NSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGL 429
            + I       ++   L+     L   +           ++ +  +  G I L    E  
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA--ELDGTLQQAVGQIELQHATEEQ 406

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  148 bits (376), Expect = 2e-38
 Identities = 61/389 (15%), Positives = 125/389 (32%), Gaps = 28/389 (7%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
            +P   L  L+LS+N+      L   +L+ L  L  N N       +    +     +  
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNN------YV--QELLVGPSIET 103

Query: 73  MVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGT 132
           +  A   +  ++  S G      ++ L  N IT     + G    ++ L+L  N+     
Sbjct: 104 LHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 133 IPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLT 192
             E   +   L  L++  N +   +   ++   KL+ L L +N L+  +     ++  +T
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 193 MLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV 252
            +SL +N L   + + L     L   DL  N           S+   +   V +     +
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKL 275

Query: 253 LPDSLARCKNLLRFRVSNNHLEGSIPEGI------LSLPHVSIIDLSYNSFSGPIANTVG 306
              +   C             E  +P         L     +++    +     +     
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETER-LECERE 333

Query: 307 NARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS 366
           N     E+   + Q    I     R  + + ++     L   + +G     +L+  + Q+
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 367 NKLN--SSIPNSLSSLKSLNVLDLSNNLL 393
                        S L+ L  +      +
Sbjct: 394 VGQIELQHATEEQSPLQLLRAIVKRYEEM 422

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  143 bits (361), Expect = 2e-36
 Identities = 56/288 (19%), Positives = 95/288 (32%), Gaps = 19/288 (6%)

Query: 133 IPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLT 192
           I E   N        ++ + L   +         ++ L L  N LS   ++ +A  T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 193 MLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS--GPLPAKVCSRGKLQYFLVLQNMFS 250
           +L+L  N L      DL   S L  LDL+ N +      P        ++      N  S
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLVGP-------SIETLHAANNNIS 112

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG-PIANTVGNAR 309
            V        +      ++NN +             V  +DL  N       A    ++ 
Sbjct: 113 RVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKL 369
            L  L +Q N I   +  ++     L  +DLS N L+  +     +   +  + L++NKL
Sbjct: 170 TLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226

Query: 370 NSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLS 417
              I  +L   ++L   DL  N                    +   + 
Sbjct: 227 -VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISL 335
           +I E   +     I  ++ +S    +A+   +A N+ EL +  N +S    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 336 VKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG 395
             ++LS N+L   +   + +L  L  L L +N +       L    S+  L  +NN ++ 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 396 YIPESLCELLPNSINFSNNRLSGPIPLSL 424
            +  S  +   N I  +NN+++    L  
Sbjct: 113 RVSCSRGQGKKN-IYLANNKITMLRDLDE 140

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  154 bits (392), Expect = 5e-39
 Identities = 82/425 (19%), Positives = 149/425 (35%), Gaps = 46/425 (10%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
              +    RL LS N        S   L  L++L       +    + + +   L  LRI
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ--YTPLTIDKEAFRNLPNLRI 77

Query: 73  MVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGL--LKNLRQLELYYNQQLA 130
           + L +  ++   P +   +  L +L L    ++  +  +     LK L +L+L  NQ  +
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 131 GTIPEELGNLTELTDLDMSVNHLSGKIPESI--LRLPKLRVLQLYNNSLSGEISSVIANS 188
             +    G L  L  +D S N +       +  L+   L    L  NSL   +S      
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
                                 +   L +LD+S N  +  +                 N 
Sbjct: 198 MNPF------------------RNMVLEILDVSGNGWTVDITG------------NFSNA 227

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSI--IDLSYNSFSGPIANTV 305
            S     SL    +++      ++++    +   + L   S+  +DLS+       +   
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 306 GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQ 365
              ++L  L +  N+I+       Y   +L  ++LS NLL     S    L K+  + LQ
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 366 SNKLNSSIPNSLSSLKSLNVLDLSNNLLTG-YIPESLCELLPNSINFSNNRLSGPIPLSL 424
            N +      +   L+ L  LDL +N LT  +   S+ ++       S N+L     ++L
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI-----FLSGNKLVTLPKINL 401

Query: 425 IKEGL 429
               +
Sbjct: 402 TANLI 406

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  152 bits (386), Expect = 3e-38
 Identities = 104/539 (19%), Positives = 187/539 (34%), Gaps = 78/539 (14%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSI--FRLTK 69
           F  ++ L RLDLS N     +    F  L +L+ + F+ N   +++ + E  +   +   
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN---QIFLVCEHELEPLQGKT 175

Query: 70  LRIMVLATCALHGQIPASIGNV------TSLTDLELTGNFITGHIP------------PE 111
           L    LA  +L+ ++    G          L  L+++GN  T  I               
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 112 IGLLKNLRQLELYYNQ-------------------------QLAGTIPEELGNLTELTDL 146
           + L  ++      ++                           +          L +L  L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 147 DMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVP 206
           +++ N ++    E+   L  L+VL L  N L    SS       +  + L  N +     
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 207 QDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRF 266
           Q       L  LDL +N L+      +     +    +  N    +    +    NL+  
Sbjct: 356 QTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTL--PKINLTANLIHL 408

Query: 267 RVSNNHLEG-SIPEGILSLPHVSIIDLSYNSFSG-PIANTVGNARNLSELFMQRNQISGF 324
             S N LE   I   +L +PH+ I+ L+ N FS      T     +L +LF+  N +   
Sbjct: 409 --SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 325 IPSEIYRAI-----SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSS 379
             +E+   +      L  + L+ N L+   P    +L  L  L L SN+L     N L +
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526

Query: 380 LKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGL 439
             +L +LD+S N L    P+    L  + ++ ++N+      LS     L  +     G 
Sbjct: 527 --NLEILDISRNQLLAPNPDVFVSL--SVLDITHNKFICECELSTFINWLNHTNVTIAGP 582

Query: 440 CVSVSVNS--SDKNFPL-------CPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRF 489
              +      S     L       C   +  + L     +V +  +    + +    +F
Sbjct: 583 PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKF 641

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (356), Expect = 1e-34
 Identities = 66/365 (18%), Positives = 123/365 (33%), Gaps = 37/365 (10%)

Query: 83  QIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEELGNLT 141
           Q+P  +    +   L L+ N+I   +       L+ L+ LEL           E   NL 
Sbjct: 18  QVPQVL---NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 142 ELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEI--SSVIANSTTLTMLSLYD 198
            L  LD+  + +   +     + L  L  L+LY   LS  +       N   LT L L  
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 199 NSLTG-EVPQDLGQWSPLVVLDLSENKLSGPLPA--KVCSRGKLQYFLVLQNMFSGVLPD 255
           N +    +    G+ + L  +D S N++        +      L +F +  N     +  
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 256 SLARCKNLLRFR------------------VSNNHLEGSIPEGILSLPHVSIIDLSYNSF 297
              +C N  R                      +N +  S    ++   H+      +++ 
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 298 SGPIANTVGN--ARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI-G 354
             P  NT       ++  L +    +             L  ++L+ N ++  I      
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFY 311

Query: 355 NLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFS 412
            L  L +L L  N L     ++   L  +  +DL  N +   I +   + L    +++  
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLR 370

Query: 413 NNRLS 417
           +N L+
Sbjct: 371 DNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.2 bits (224), Expect = 1e-18
 Identities = 42/276 (15%), Positives = 83/276 (30%), Gaps = 32/276 (11%)

Query: 171 QLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLP 230
           ++        ++ V     T   L L  N +             L +L+L        + 
Sbjct: 7   RIAFYRFCN-LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 231 AKVCSR-GKLQYFLVLQ-NMFSGVLPDSLARCKNLLRFRVSNNHL-EGSIPEGILS-LPH 286
            +       L+  L L  +    + PD+     +L   R+    L +  + +G    L  
Sbjct: 66  KEAFRNLPNLRI-LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 287 VSIIDLSYNSFSG-PIANTVGNARNLSELFMQRNQISGFIPSEIY--RAISLVKIDLSDN 343
           ++ +DLS N      +  + G   +L  +    NQI      E+   +  +L    L+ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 344 LLSGPIPSGIGNLKK------LNLLMLQSNKLNSSIPN------------SLSSLKSLNV 385
            L   +    G          L +L +  N     I              SL     +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 386 LDLSNNLLTGYIPESLCELLPNS----INFSNNRLS 417
                + +     ++    L  S    ++ S+  + 
Sbjct: 245 AGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 9e-12
 Identities = 49/282 (17%), Positives = 82/282 (29%), Gaps = 42/282 (14%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           L     + ++  + LS N            L  L  ++   N            +  L++
Sbjct: 374 LTTIHFIPSIPDIFLSGN-----------KLVTLPKINLTAN------------LIHLSE 410

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPE--IGLLKNLRQLELYYNQ 127
            R+  L        I   +  V  L  L L  N  +     +       +L QL L  N 
Sbjct: 411 NRLENL-------DILYFLLRVPHLQILILNQNRFS-SCSGDQTPSENPSLEQLFLGENM 462

Query: 128 ----QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS 183
                      +    L+ L  L ++ N+L+   P     L  LR L L +N L+    S
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--LS 520

Query: 184 VIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFL 243
                  L +L +  N L    P        L VLD++ NK                  +
Sbjct: 521 HNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNV 577

Query: 244 VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLP 285
            +    + +          +  F +S    +       L   
Sbjct: 578 TIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFS 619

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  146 bits (370), Expect = 6e-39
 Identities = 57/307 (18%), Positives = 98/307 (31%), Gaps = 61/307 (19%)

Query: 529 TEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
               K+G+GG   V  +  L+ G   A+K+       +   +    +     + E +   
Sbjct: 32  LFIQKLGEGGFSYVDLVEGLHDGHFYALKR-------ILCHEQQDREE---AQREADMHR 81

Query: 588 NIRHKNIVKLYCYFSSLYCN----LLVYEYMPNGNLWDALHKGLV---HLDWPTRHKIAF 640
              H NI++L  Y            L+  +   G LW+ + +       L       +  
Sbjct: 82  LFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLL 141

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
           G+ +GL  +H        HRD+K TNILL    QP + D G                 + 
Sbjct: 142 GICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQ 198

Query: 701 ------GTYGYLAPE----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
                  T  Y APE     ++      + DV+S G VL  ++ G  P +  F       
Sbjct: 199 DWAAQRCTISYRAPELFSVQSH-CVIDERTDVWSLGCVLYAMMFGEGPYDMVFQK----- 252

Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNE 802
                         + +   +               + Q+L       +  P  RP +  
Sbjct: 253 -------------GDSVALAVQNQLSIPQSPRHSSALWQLLN---SMMTVDPHQRPHIPL 296

Query: 803 VVQLLAE 809
           ++  L  
Sbjct: 297 LLSQLEA 303

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  144 bits (366), Expect = 1e-38
 Identities = 65/293 (22%), Positives = 113/293 (38%), Gaps = 61/293 (20%)

Query: 532 NKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             +G GG G V+K      G+   +K++     K               + EV+ L  + 
Sbjct: 17  ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKA--------------EREVKALAKLD 62

Query: 591 HKNIVKLYCYF-------------SSLYCNLLVY---EYMPNGNLWDALHK-GLVHLDWP 633
           H NIV     +             SS      ++   E+   G L   + K     LD  
Sbjct: 63  HVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKV 122

Query: 634 TRHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
              ++   + +G+ Y+H       +I+RD+K +NI L    Q K+ DFG+   L+     
Sbjct: 123 LALELFEQITKGVDYIHSKK----LINRDLKPSNIFLVDTKQVKIGDFGLVTSLK----N 174

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           D   T   GT  Y++PE   S     + D+Y+ G++L EL+                   
Sbjct: 175 DGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAF------------ 222

Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
                +T +   ++ D  +S  F  +   +L+   +  SK P  RP  +E+++
Sbjct: 223 -----ETSKFFTDLRDGIISDIFDKKEKTLLQ---KLLSKKPEDRPNTSEILR 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  145 bits (367), Expect = 2e-38
 Identities = 59/321 (18%), Positives = 104/321 (32%), Gaps = 19/321 (5%)

Query: 133 IPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLT 192
           I E   N        ++ + L   +         ++ L L  N LS   ++ +A  T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 193 MLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS--GPLPAKVCSRGKLQYFLVLQNMFS 250
           +L+L  N L      DL   S L  LDL+ N +      P        ++      N  S
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLVGP-------SIETLHAANNNIS 112

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG-PIANTVGNAR 309
            V        +      ++NN +             V  +DL  N       A    ++ 
Sbjct: 113 RVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKL 369
            L  L +Q N I   +  ++  A  L  +DLS N L+  +     +   +  + L++NKL
Sbjct: 170 TLEHLNLQYNFIYD-VKGQVVFA-KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226

Query: 370 NSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGL 429
              I  +L   ++L   DL  N                    +   +      +  +  +
Sbjct: 227 -VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 430 VESFSGNPGLCVSVSVNSSDK 450
                     C  +    +D+
Sbjct: 286 PTLGHYGAYCCEDLPAPFADR 306

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  129 bits (327), Expect = 4e-33
 Identities = 53/342 (15%), Positives = 119/342 (34%), Gaps = 42/342 (12%)

Query: 67  LTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYN 126
             + +I  +   +L   + +   +  ++ +L+L+GN ++     ++     L  L L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 127 QQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIA 186
                    +L +L+ L  LD++ N++       +L  P +  L   NN++S  +S    
Sbjct: 69  VL---YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRG 119

Query: 187 NSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQ 246
                  + L +N +T     D G  S +  LDL  N++   +                 
Sbjct: 120 QG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VN---------------- 160

Query: 247 NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVG 306
                   +  A    L    +  N +   +   +     +  +DLS N  +  +     
Sbjct: 161 ------FAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQ 211

Query: 307 NARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLS-GPIPSGIGNLKKLNLLMLQ 365
           +A  ++ + ++ N++   I   +  + +L   DL  N    G +       +++  +  Q
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 366 SNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN 407
           + K    +        ++  L          +P    + L  
Sbjct: 271 TVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (323), Expect = 1e-32
 Identities = 48/311 (15%), Positives = 114/311 (36%), Gaps = 46/311 (14%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
                  +   ++++    Q   S+  +  N++ L  + N    L ++  + +   TKL 
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---PLSQISAADLAPFTKLE 61

Query: 72  IMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAG 131
           ++ L++  L+ +    + ++++L  L+L  N++      E+ +  ++  L    N     
Sbjct: 62  LLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN--IS 112

Query: 132 TIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG-EISSVIANSTT 190
            +           ++ ++ N ++           +++ L L  N +     + + A+S T
Sbjct: 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 191 LTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFS 250
           L  L+L  N +  +V   +  ++ L  LDLS NKL+                        
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA------------------------ 204

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFS-GPIANTVGNAR 309
             +         +    + NN L   I + +    ++   DL  N F  G + +     +
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 310 NLSELFMQRNQ 320
            +  +  Q  +
Sbjct: 263 RVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (301), Expect = 9e-30
 Identities = 48/286 (16%), Positives = 98/286 (34%), Gaps = 23/286 (8%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
            +P   L  L+LS+N+      L + +L+ L  L  N N       +    +     +  
Sbjct: 54  LAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNN------YV--QELLVGPSIET 103

Query: 73  MVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGT 132
           +  A   +  ++  S G      ++ L  N IT     + G    ++ L+L  N+     
Sbjct: 104 LHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 133 IPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLT 192
             E   +   L  L++  N +   +   ++   KL+ L L +N L+  +     ++  +T
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 193 MLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV 252
            +SL +N L   + + L     L   DL  N        +       +   V +     +
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 253 LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFS 298
              +   C  +        +    +P          +I L ++   
Sbjct: 276 TGQNEEECT-VPTLGHYGAYCCEDLPAPFAD----RLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISL 335
           +I E   +     I  ++ +S    +A+   +A N+ EL +  N +S    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 336 VKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG 395
             ++LS N+L   +   + +L  L  L L +N +       L    S+  L  +NN ++ 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 396 YIPESLCELLPNSINFSNNRLSGPIPLSL 424
            +  S  +    +I  +NN+++    L  
Sbjct: 113 RVSCSRGQGK-KNIYLANNKITMLRDLDE 140

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  143 bits (363), Expect = 5e-38
 Identities = 65/291 (22%), Positives = 113/291 (38%), Gaps = 49/291 (16%)

Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G GGS  V+++     ++ A+K +     +               + E+  L  ++ 
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYV--NLEEADNQTL------DSYRNEIAYLNKLQQ 85

Query: 592 KN--IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            +  I++LY Y      +Y   +V E   N +L   L K    +D   R      + + +
Sbjct: 86  HSDKIIRLYDYEITDQYIY---MVMECG-NIDLNSWLKKKK-SIDPWERKSYWKNMLEAV 140

Query: 647 AYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
             +H HG    I+H D+K  N L+  +   K+ DFGIA  +Q         + + GT  Y
Sbjct: 141 HTIHQHG----IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQV-GTVNY 194

Query: 706 LAPE-----------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
           + PE               SK + K DV+S G +L  +  G+ P    F    N I  + 
Sbjct: 195 MPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP----FQQIINQISKLH 250

Query: 755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             +D    I            +D    VL+    C  + P  R ++ E++ 
Sbjct: 251 AIIDPNHEI--EFPDIPEKDLQD----VLK---CCLKRDPKQRISIPELLA 292

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score =  143 bits (363), Expect = 8e-38
 Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 25/227 (11%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           + ++ RE +  MT + +VG+G  G V++  D  +G   AVK               +++L
Sbjct: 49  VDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVK---------------KVRL 93

Query: 576 DKGLKTEVETLGNIRHKNIVKLY-CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
           +     E+     +    IV LY       + N+   E +  G+L   + +    L    
Sbjct: 94  EVFRVEELVACAGLSSPRIVPLYGAVREGPWVNI-FMELLEGGSLGQLIKQMG-CLPEDR 151

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARGGKD 693
                    +GL YLH      I+H D+K+ N+LL  +  +  + DFG A  LQ  G   
Sbjct: 152 ALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK 208

Query: 694 STTTV--IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           S  T   I GT  ++APE         K D++S   +++ ++ G  P
Sbjct: 209 SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHP 255

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score =  143 bits (363), Expect = 1e-37
 Identities = 73/309 (23%), Positives = 131/309 (42%), Gaps = 45/309 (14%)

Query: 503 SSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQ 561
            SS      ++ +  S ++   L+      K+G+G  G    +     G    +K++   
Sbjct: 7   HSSGVDLGTENLYFQSMEKYVRLQ------KIGEGSFGKAILVKSTEDGRQYVIKEI--N 58

Query: 562 RTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGN 618
            +++S+ + ++ +       EV  L N++H NIV+    F    SLY   +V +Y   G+
Sbjct: 59  ISRMSSKEREESR------REVAVLANMKHPNIVQYRESFEENGSLY---IVMDYCEGGD 109

Query: 619 LWDALHK-GLVHLDWPTRHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPK 676
           L+  ++    V             +   L ++H       I+HRDIKS NI L  +   +
Sbjct: 110 LFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK----ILHRDIKSQNIFLTKDGTVQ 165

Query: 677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           + DFGIA+VL      +     I GT  YL+PE   +     K D+++ G VL EL T +
Sbjct: 166 LGDFGIARVLN--STVELARACI-GTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLK 222

Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
              E      KN++     K+    G    +    S   R  ++       +   ++P  
Sbjct: 223 HAFEAG--SMKNLVL----KI--ISGSFPPVSLHYSYDLRS-LVS------QLFKRNPRD 267

Query: 797 RPTMNEVVQ 805
           RP++N +++
Sbjct: 268 RPSVNSILE 276

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score =  140 bits (356), Expect = 2e-37
 Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 34/282 (12%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            +G G  G   KI   + G+++  K+L      ++ ++   L       +EV  L  ++H
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKEL--DYGSMTEAEKQMLV------SEVNLLRELKH 64

Query: 592 KNIVKLYCYFSSLYCNLL--VYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGVAQGL 646
            NIV+ Y          L  V EY   G+L   + KG     +LD     ++   +   L
Sbjct: 65  PNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLAL 124

Query: 647 AYLH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
              H        ++HRD+K  N+ LD     K+ DFG+A++L          T + GT  
Sbjct: 125 KECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNH--DTSFAKTFV-GTPY 181

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           Y++PE         K D++S G +L EL     P       +      ++ K+  +EG  
Sbjct: 182 YMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFT---AFS---QKELAGKI--REGKF 233

Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL 806
             +  + S    + +I       R  +     RP++ E+++ 
Sbjct: 234 RRIPYRYSDELNE-IIT------RMLNLKDYHRPSVEEILEN 268

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  140 bits (356), Expect = 3e-37
 Identities = 65/305 (21%), Positives = 115/305 (37%), Gaps = 58/305 (19%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
            E   +GQG  G V K  +       A+KK+             + +L   + +EV  L 
Sbjct: 9   EEIAVLGQGAFGQVVKARNALDSRYYAIKKI----------RHTEEKLST-ILSEVMLLA 57

Query: 588 NIRHKNIVKLYCYFSSLYCNL-------------LVYEYMPNGNLWDALHKGLVHLDWPT 634
           ++ H+ +V+ Y  +      +             +  EY  NG L+D +H   ++     
Sbjct: 58  SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDE 117

Query: 635 RHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA----- 688
             ++   + + L+Y+H  G    IIHRD+K  NI +D +   K+ DFG+AK +       
Sbjct: 118 YWRLFRQILEALSYIHSQG----IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDIL 173

Query: 689 -------RGGKDSTTTVIAGTYGYLAPE-YAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
                   G  D+ T+ I GT  Y+A E    +     K D+YS G++  E+I       
Sbjct: 174 KLDSQNLPGSSDNLTSAI-GTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGM 232

Query: 741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
           +     K +          +   +E        +      +++R         P  RP  
Sbjct: 233 ERVNILKKL----------RSVSIE-FPPDFDDNKMKVEKKIIR---LLIDHDPNKRPGA 278

Query: 801 NEVVQ 805
             ++ 
Sbjct: 279 RTLLN 283

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  142 bits (359), Expect = 3e-37
 Identities = 65/291 (22%), Positives = 113/291 (38%), Gaps = 49/291 (16%)

Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G GGS  V+++     ++ A+K +     +               + E+  L  ++ 
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYV--NLEEADNQTL------DSYRNEIAYLNKLQQ 66

Query: 592 KN--IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            +  I++LY Y      +Y   +V E   N +L   L K    +D   R      + + +
Sbjct: 67  HSDKIIRLYDYEITDQYIY---MVMEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAV 121

Query: 647 AYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
             +H HG    I+H D+K  N L+  +   K+ DFGIA  +Q         + + GT  Y
Sbjct: 122 HTIHQHG----IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQV-GTVNY 175

Query: 706 LAPE-----------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
           + PE               SK + K DV+S G +L  +  G+ P    F    N I  + 
Sbjct: 176 MPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP----FQQIINQISKLH 231

Query: 755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             +D    I            +D    VL+    C  + P  R ++ E++ 
Sbjct: 232 AIIDPNHEI--EFPDIPEKDLQD----VLK---CCLKRDPKQRISIPELLA 273

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score =  141 bits (358), Expect = 3e-37
 Identities = 77/311 (24%), Positives = 125/311 (40%), Gaps = 51/311 (16%)

Query: 520 DQREILEA-MTEKNKVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
           D     E  +   +++G+G  G+V       +  N+G +VAVK+L     + S  D    
Sbjct: 16  DPTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQL-----QHSGPDQQ-- 68

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
              +  + E++ L  +    IVK     Y        LV EY+P+G L D L +    LD
Sbjct: 69  ---RDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLD 125

Query: 632 WPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
                  +  + +G+ YL          +HRD+ + NIL++     K+ADFG+AK+L   
Sbjct: 126 ASRLLLYSSQICKGMEYLGSRR-----CVHRDLAARNILVESEAHVKIADFGLAKLLPL- 179

Query: 690 GGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF 743
             KD          G       APE    +  + + DV+SFGVVL EL T   K      
Sbjct: 180 -DKDYYV---VREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSA 235

Query: 744 GDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPAT 796
                   ++ +    ++      +L + L    R         +V  +   C + SP  
Sbjct: 236 E-------FLRMMGCERDVPALSRLL-ELLEEGQRLPAPPACPAEVHELMKLCWAPSPQD 287

Query: 797 RPTMNEVVQLL 807
           RP+ + +   L
Sbjct: 288 RPSFSALGPQL 298

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  139 bits (354), Expect = 3e-37
 Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 38/276 (13%)

Query: 535 GQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+G    VY+   +++G  VA+K +   +  +  +      + + ++ EV+    ++H +
Sbjct: 20  GKGSFAGVYRAESIHTGLEVAIKMI--DKKAMYKAG-----MVQRVQNEVKIHCQLKHPS 72

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           I++LY YF     +Y   LV E   NG +   L   +              +  G+ YLH
Sbjct: 73  ILELYNYFEDSNYVY---LVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH 129

Query: 651 -HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
            HG    I+HRD+  +N+LL  N   K+ADFG+A  L+    K  T   + GT  Y++PE
Sbjct: 130 SHG----ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYT---LCGTPNYISPE 182

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
            A  S    + DV+S G +   L+ GR P +    D         +  D +      +  
Sbjct: 183 IATRSAHGLESDVWSLGCMFYTLLIGRPPFDT---DTVKNTLNKVVLADYE------MPS 233

Query: 770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            LS   +D + Q+LR       ++PA R +++ V+ 
Sbjct: 234 FLSIEAKDLIHQLLR-------RNPADRLSLSSVLD 262

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score =  142 bits (360), Expect = 4e-37
 Identities = 65/307 (21%), Positives = 111/307 (36%), Gaps = 57/307 (18%)

Query: 517 ISFDQREIL-EAMTEKNKVGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQ 574
           +  D+  +  E +    ++G+G  G V+   L +    VAVK       + +     + +
Sbjct: 104 VPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSC-----RETLPPDLKAK 158

Query: 575 LDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
               L+ E   L    H NIV+L   C         +V E +  G+    L      L  
Sbjct: 159 F---LQ-EARILKQYSHPNIVRLIGVCTQKQPIY--IVMELVQGGDFLTFLRTEGARLRV 212

Query: 633 PTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
            T  ++    A G+ YL        IHRD+ + N L+      K++DFG+++        
Sbjct: 213 KTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFGMSREEA----- 264

Query: 693 DSTTTVIAGTYGY----LAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNK 747
           D       G         APE     + +++ DV+SFG++L E  + G  P         
Sbjct: 265 DGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASP--------- 315

Query: 748 NIIYWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTM 800
              Y           +   +  +    G  R          V R+  +C +  P  RP+ 
Sbjct: 316 ---YP---------NLSNQQTREFVEKG-GRLPCPELCPDAVFRLMEQCWAYEPGQRPSF 362

Query: 801 NEVVQLL 807
           + + Q L
Sbjct: 363 STIYQEL 369

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score =  140 bits (355), Expect = 5e-37
 Identities = 80/316 (25%), Positives = 129/316 (40%), Gaps = 56/316 (17%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
           D        +     +G+G  G V          N+GE VAVK L     K  +      
Sbjct: 14  DPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSL-----KPESGGNHI- 67

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
                LK E+E L N+ H+NIVK    C         L+ E++P+G+L + L K    ++
Sbjct: 68  ---ADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKIN 124

Query: 632 WPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
              + K A  + +G+ YL          +HRD+ + N+L++  +Q K+ DFG+ K ++  
Sbjct: 125 LKQQLKYAVQICKGMDYLGSRQ-----YVHRDLAARNVLVESEHQVKIGDFGLTKAIET- 178

Query: 690 GGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG 744
             K+  T               APE    SK     DV+SFGV L EL+T        + 
Sbjct: 179 -DKEYYT---VKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT--------YC 226

Query: 745 DNKNIIYWVSIKVDTKE-GIMEVLD--KKLSGSFR--------DEMIQVLRIAIRCTSKS 793
           D+ +    + +K+     G M V      L    R        DE+ Q++R   +C    
Sbjct: 227 DSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMR---KCWEFQ 283

Query: 794 PATRPTMNEVVQLLAE 809
           P+ R +   +++    
Sbjct: 284 PSNRTSFQNLIEGFEA 299

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  139 bits (352), Expect = 6e-37
 Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 41/276 (14%)

Query: 535 GQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+G  G VY   +  S  ++A+K L   + ++      +  ++  L+ EVE   ++RH N
Sbjct: 18  GKGKFGNVYLAREKQSKFILALKVL--FKAQLE-----KAGVEHQLRREVEIQSHLRHPN 70

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           I++LY YF     +Y   L+ EY P G ++  L K L   D          +A  L+Y H
Sbjct: 71  ILRLYGYFHDATRVY---LILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCH 126

Query: 651 -HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
                  +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE
Sbjct: 127 SKR----VIHRDIKPENLLLGSAGELKIADFGWSVHAP-----SSRRTDLCGTLDYLPPE 177

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
                    K D++S GV+  E + G+ P E    +     Y    +V+           
Sbjct: 178 MIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA---NTYQETYKRISRVEFT------FPD 228

Query: 770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            ++   RD + ++L+        +P+ RP + EV++
Sbjct: 229 FVTEGARDLISRLLK-------HNPSQRPMLREVLE 257

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  139 bits (352), Expect = 1e-36
 Identities = 60/321 (18%), Positives = 120/321 (37%), Gaps = 61/321 (19%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            +G+GG G V++  +       A+K++     ++   +  +    + +  EV+ L  + H
Sbjct: 12  CLGRGGFGVVFEAKNKVDDCNYAIKRI-----RLPNRELAR----EKVMREVKALAKLEH 62

Query: 592 KNIVKLYCYF---------SSLYCNLLVY---EYMPNGNLWDALH--KGLVHLDWPTRHK 637
             IV+ +  +               + +Y   +     NL D ++    +   +      
Sbjct: 63  PGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLH 122

Query: 638 IAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ--------- 687
           I   +A+ + +LH  G    ++HRD+K +NI   ++   KV DFG+   +          
Sbjct: 123 IFLQIAEAVEFLHSKG----LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVL 178

Query: 688 ARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK 747
                 +  T   GT  Y++PE  + +  + K D++S G++L EL+    P        +
Sbjct: 179 TPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PF---STQME 232

Query: 748 NIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            +     +    +      L  +        M+Q         S SP  RP    +++  
Sbjct: 233 RVRTLTDV----RNLKFPPLFTQKYPCEYV-MVQ------DMLSPSPMERPEAINIIE-- 279

Query: 808 AEADPCRFESCKFPNKSNKES 828
              +   FE   FP K+    
Sbjct: 280 ---NAV-FEDLDFPGKTVLRQ 296

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score =  138 bits (351), Expect = 2e-36
 Identities = 62/304 (20%), Positives = 115/304 (37%), Gaps = 40/304 (13%)

Query: 533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G+G    VY+   L  G  VA+KK       V   D    +       E++ L  + H
Sbjct: 39  KIGRGQFSEVYRAACLLDGVPVALKK-------VQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDAL---HKGLVHLDWPTRHKIAFGVAQG 645
            N++K Y  F   + L    +V E    G+L   +    K    +   T  K    +   
Sbjct: 92  PNVIKYYASFIEDNELN---IVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSA 148

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           L ++H      ++HRDIK  N+ +      K+ D G+ +   ++     +   + GT  Y
Sbjct: 149 LEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS---LVGTPYY 202

Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           ++PE  + +    K D++S G +L E+   + P   D  +  ++      K++  +    
Sbjct: 203 MSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCK----KIEQCD-YPP 257

Query: 766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSN 825
           +     S   R  ++        C +  P  RP +  V  +       R  +C   +  +
Sbjct: 258 LPSDHYSEELRQ-LVN------MCINPDPEKRPDVTYVYDV-----AKRMHACTASSLEH 305

Query: 826 KESS 829
               
Sbjct: 306 HHHH 309

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (356), Expect = 2e-36
 Identities = 76/377 (20%), Positives = 147/377 (38%), Gaps = 54/377 (14%)

Query: 19  LRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATC 78
              + +        F      L N ++++F  +    + KLP + +    ++ ++ L   
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDL 79

Query: 79  ALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEIGL-LKNLRQLELYYNQQLAGTIPEE 136
            +  +I         ++  L +  N I  ++PP +   +  L  L L  N  L+ ++P  
Sbjct: 80  QIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND-LS-SLPRG 135

Query: 137 L-GNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLTML 194
           +  N  +LT L MS N+L  +I +   +    L+ LQL +N L+    S+I +   L   
Sbjct: 136 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHA 191

Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP 254
           ++  N L+      L     +  LD S N ++                         V+ 
Sbjct: 192 NVSYNLLS-----TLAIPIAVEELDASHNSIN-------------------------VVR 221

Query: 255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSEL 314
             +     L   ++ +N+L       +L+ P +  +DLSYN     + +     + L  L
Sbjct: 222 GPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

Query: 315 FMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP 374
           ++  N++   +        +L  +DLS N L   +        +L  L L  N +  ++ 
Sbjct: 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI-VTLK 334

Query: 375 NSLSSLKSLNVLDLSNN 391
             LS+  +L  L LS+N
Sbjct: 335 --LSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (322), Expect = 6e-32
 Identities = 64/339 (18%), Positives = 131/339 (38%), Gaps = 25/339 (7%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL 143
           I +++       D+ +       +   E   L N + +    +  +       L +  ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQV 71

Query: 144 TDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT 202
             L+++   +  +I          ++ L +  N++      V  N   LT+L L  N L+
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 203 GEVPQDLGQWSP-LVVLDLSENKLSGPLPAKVCSR-GKLQYFLVLQNMFSGVLPDSLARC 260
             +P+ +   +P L  L +S N L   +          LQ   +  N  + V    +   
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLI--- 185

Query: 261 KNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQ 320
            +L    VS N L  ++         V  +D S+NS +            L+ L +Q N 
Sbjct: 186 PSLFHANVSYNLLS-TLA----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNN 237

Query: 321 ISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSS 379
           ++    + +     LV++DLS N L   I       +++L  L + +N+L  ++      
Sbjct: 238 LTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL-VALNLYGQP 293

Query: 380 LKSLNVLDLSNNLLTGYIPESLCELLP-NSINFSNNRLS 417
           + +L VLDLS+N L  ++  +  +     ++   +N + 
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (312), Expect = 1e-30
 Identities = 68/370 (18%), Positives = 131/370 (35%), Gaps = 54/370 (14%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
               + +  L+L++     +     F     ++ L    N    +  LP      +  L 
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN---AIRYLPPHVFQNVPLLT 120

Query: 72  IMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQL 129
           ++VL    L   +P  I  N   LT L ++ N +   I  +      +L+ L+L  N+  
Sbjct: 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
              +   L  +  L   ++S N LS     ++     +  L   +NS++  +   +    
Sbjct: 179 --HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVE- 227

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMF 249
            LT+L L  N+LT +    L  +  LV +DLS N+L                        
Sbjct: 228 -LTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNEL------------------------ 260

Query: 250 SGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR 309
             ++     + + L R  +SNN L  ++      +P + ++DLS+N     +        
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFD 318

Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKL 369
            L  L++  N I   +    +   +L  + LS N         +   + +    +     
Sbjct: 319 RLENLYLDHNSIV-TLKLSTHH--TLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQ 373

Query: 370 NSSIPNSLSS 379
           +  I   L  
Sbjct: 374 HCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (273), Expect = 1e-25
 Identities = 53/296 (17%), Positives = 104/296 (35%), Gaps = 20/296 (6%)

Query: 126 NQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI 185
            Q     I   L       D+ + +           + L   +++   N+++    ++++
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYFLV 244
            +   + +L+L D  +             +  L +  N +   LP  V      L   ++
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVL 124

Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIAN 303
            +N  S +          L    +SNN+LE  I +        +  + LS N  +     
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT---HV 180

Query: 304 TVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLM 363
            +    +L    +  N +     S +   I++ ++D S N ++  +   +    +L +L 
Sbjct: 181 DLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV-VRGPV--NVELTILK 232

Query: 364 LQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLS 417
           LQ N L       L +   L  +DLS N L   I       +     +  SNNRL 
Sbjct: 233 LQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRL 67
                     L  +DLS N    +     F  +  LE L  + N   +L  L       +
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN---RLVALNL-YGQPI 294

Query: 68  TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
             L+++ L+   L   +  +      L +L L  N I   +         L+ L L +N 
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHND 350

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  140 bits (355), Expect = 3e-36
 Identities = 64/291 (21%), Positives = 112/291 (38%), Gaps = 49/291 (16%)

Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            ++G GGS  V+++     ++ A+K +     +               + E+  L  ++ 
Sbjct: 62  KQIGSGGSSKVFQVLNEKKQIYAIKYV--NLEEADNQTL------DSYRNEIAYLNKLQQ 113

Query: 592 KN--IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            +  I++LY Y      +Y   +V E   N +L   L K    +D   R      + + +
Sbjct: 114 HSDKIIRLYDYEITDQYIY---MVMEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAV 168

Query: 647 AYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
             +H HG    I+H D+K  N L+  +   K+ DFGIA  +Q         + + G   Y
Sbjct: 169 HTIHQHG----IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQV-GAVNY 222

Query: 706 LAPE-----------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
           + PE               SK + K DV+S G +L  +  G+ P    F    N I  + 
Sbjct: 223 MPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP----FQQIINQISKLH 278

Query: 755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             +D    I            +D    VL+    C  + P  R ++ E++ 
Sbjct: 279 AIIDPNHEI--EFPDIPEKDLQD----VLK---CCLKRDPKQRISIPELLA 320

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score =  137 bits (348), Expect = 3e-36
 Identities = 82/294 (27%), Positives = 121/294 (41%), Gaps = 54/294 (18%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G GG  TVY   D      VA+K ++           + L   K  + EV     + H
Sbjct: 18  KLGGGGMSTVYLAEDTILNIKVAIKAIFIP----PREKEETL---KRFEREVHNSSQLSH 70

Query: 592 KNIVKLY-------CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
           +NIV +        CY+       LV EY+    L + +      L   T       +  
Sbjct: 71  QNIVSMIDVDEEDDCYY-------LVMEYIEGPTLSEYIESH-GPLSVDTAINFTNQILD 122

Query: 645 GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT---VIA 700
           G+ + H       I+HRDIK  NIL+D N   K+ DFGIAK L      +++ T    + 
Sbjct: 123 GIKHAHDMR----IVHRDIKPQNILIDSNKTLKIFDFGIAKALS-----ETSLTQTNHVL 173

Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK 760
           GT  Y +PE A         D+YS G+VL E++ G  P     G+       VSI     
Sbjct: 174 GTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN---GETA-----VSI----- 220

Query: 761 EGIMEVLDK--KLSGSFRDEMIQVL-RIAIRCTSKSPATRP-TMNEVVQLLAEA 810
             I  + D    ++   R ++ Q L  + +R T K  A R  T+ E+   L+  
Sbjct: 221 -AIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSV 273

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score =  137 bits (348), Expect = 3e-36
 Identities = 74/310 (23%), Positives = 122/310 (39%), Gaps = 53/310 (17%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEV----VAVKKLWSQRTKVSASDTDQLQ 574
               I  + +    K+G G  G V + + ++       VAVK L     K       +  
Sbjct: 11  LTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCL-----KPDVLSQPEAM 65

Query: 575 LDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
            D     EV  + ++ H+N+++LY       +    +V E  P G+L D L K   H   
Sbjct: 66  DD--FIREVNAMHSLDHRNLIRLYGVVLTPPMK---MVTELAPLGSLLDRLRKHQGHFLL 120

Query: 633 PTRHKIAFGVAQGLAYL-HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
            T  + A  VA+G+ YL         IHRD+ + N+LL      K+ DFG+ + L     
Sbjct: 121 GTLSRYAVQVAEGMGYLESKRF----IHRDLAARNLLLATRDLVKIGDFGLMRAL---PQ 173

Query: 692 KDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNK 747
            D    +       + + APE   +   +   D + FGV L E+ T G++P         
Sbjct: 174 NDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEP--------- 224

Query: 748 NIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMNE 802
              +     ++  + I+  +DK   G  R          +  + ++C +  P  RPT   
Sbjct: 225 ---WI---GLNGSQ-ILHKIDK--EG-ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVA 274

Query: 803 VVQLLAEADP 812
           +   L EA P
Sbjct: 275 LRDFLLEAQP 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (359), Expect = 3e-36
 Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 38/333 (11%)

Query: 92  TSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEE-LGNLTELTDLDMS 149
           T    L+L  N I   +  +      +L +LEL  N      +      NL  L  L + 
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI--VSAVEPGAFNNLFNLRTLGLR 88

Query: 150 VNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQD 208
            N L   IP  +   L  L  L +  N +   +  +  +   L  L + DN L     + 
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 209 LGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRV 268
               + L  L L +  L                        + +  ++L+    L+  R+
Sbjct: 148 FSGLNSLEQLTLEKCNL------------------------TSIPTEALSHLHGLIVLRL 183

Query: 269 SNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPS 327
            + ++  +I +     L  + ++++S+  +   +        NL+ L +    ++     
Sbjct: 184 RHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242

Query: 328 EIYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVL 386
            +   + L  ++LS N +S  I   +   L +L  + L   +L    P +   L  L VL
Sbjct: 243 AVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 387 DLSNNLLTGYIPESLCELLPN--SINFSNNRLS 417
           ++S N LT  + ES+   + N  ++   +N L+
Sbjct: 302 NVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (308), Expect = 1e-29
 Identities = 60/316 (18%), Positives = 114/316 (36%), Gaps = 36/316 (11%)

Query: 107 HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILR-LP 165
            +P   G+    R L+L  N+ +     +E  +   L +L+++ N +S  +       L 
Sbjct: 25  AVPE--GIPTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLF 80

Query: 166 KLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKL 225
            LR L L +N L      V    + LT L + +N +   +         L  L++ +N L
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 226 SGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-L 284
                             +    FSG L        +L +  +   +L  SIP   LS L
Sbjct: 141 V----------------YISHRAFSG-LN-------SLEQLTLEKCNLT-SIPTEALSHL 175

Query: 285 PHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNL 344
             + ++ L + + +     +      L  L +        +       ++L  + ++   
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 345 LSGPIPSG-IGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCE 403
           L+  +P   + +L  L  L L  N +++   + L  L  L  + L    L   +      
Sbjct: 236 LTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFR 293

Query: 404 LLPN--SINFSNNRLS 417
            L     +N S N+L+
Sbjct: 294 GLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (304), Expect = 5e-29
 Identities = 62/318 (19%), Positives = 122/318 (38%), Gaps = 42/318 (13%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKL 70
           +F+   +L  L+L+ N+ +       F NL NL  L    N   +L  +P      L+ L
Sbjct: 51  EFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN---RLKLIPLGVFTGLSNL 106

Query: 71  RIMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQ 128
             + ++   +   +   +  ++ +L  LE+  N +  +I       L +L QL L     
Sbjct: 107 TKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCN- 163

Query: 129 LAGTIPEE-LGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIA 186
              +IP E L +L  L  L +   +++  I +   + L +L+VL++ +      ++    
Sbjct: 164 -LTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 187 NSTTLTMLSLYDNSLTGEVPQD-LGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
               LT LS+   +LT  VP   +     L  L+LS N +S  +                
Sbjct: 222 YGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST-IEG-------------- 265

Query: 246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANT 304
            +M              L   ++    L   +       L ++ ++++S N  +    + 
Sbjct: 266 -SMLHE--------LLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

Query: 305 VGNARNLSELFMQRNQIS 322
             +  NL  L +  N ++
Sbjct: 316 FHSVGNLETLILDSNPLA 333

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score =  138 bits (349), Expect = 5e-36
 Identities = 73/312 (23%), Positives = 126/312 (40%), Gaps = 77/312 (24%)

Query: 532 NKVGQGGSGTVYK----IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
             +G G  GTVYK     +    ++ VA+K+L     + + S     ++   L  E   +
Sbjct: 21  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-----REATSPKANKEI---LD-EAYVM 71

Query: 587 GNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            ++ + ++ +L   C  S++    L+ + MP G L D + +   ++           +A+
Sbjct: 72  ASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128

Query: 645 GLAYL-HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------QARGGKDSTT 696
           G+ YL    L    +HRD+ + N+L+      K+ DFG+AK+L        A GGK    
Sbjct: 129 GMNYLEDRRL----VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK---- 180

Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSI 755
             I       A E       T + DV+S+GV + EL+T G KP            Y    
Sbjct: 181 VPIKWM----ALESILHRIYTHQSDVWSYGVTVWELMTFGSKP------------YD--- 221

Query: 756 KVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
                 GI   E+      G  R         ++  ++R   +C      +RP   E++ 
Sbjct: 222 ------GIPASEISSILEKG-ERLPQPPICTIDVYMIMR---KCWMIDADSRPKFRELII 271

Query: 806 LLAE--ADPCRF 815
             ++   DP R+
Sbjct: 272 EFSKMARDPQRY 283

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  140 bits (354), Expect = 7e-36
 Identities = 61/303 (20%), Positives = 111/303 (36%), Gaps = 55/303 (18%)

Query: 516 RISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           +ISF  +++L         G G  GT+    +     VAVK++               + 
Sbjct: 23  KISFCPKDVL---------GHGAEGTIVYRGMFDNRDVAVKRI-------------LPEC 60

Query: 576 DKGLKTEVETLGNI-RHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLD 631
                 EV+ L     H N+++ +C        Y   +  E      L + + +      
Sbjct: 61  FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQY---IAIELCA-ATLQEYVEQKDFAHL 116

Query: 632 WPTRHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILL-----DVNYQPKVADFGIAKV 685
                 +      GLA+LH       I+HRD+K  NIL+         +  ++DFG+ K 
Sbjct: 117 GLEPITLLQQTTSGLAHLHSLN----IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK 172

Query: 686 LQARGGKDSTTTVIAGTYGYLAPEY---AYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           L       S  + + GT G++APE          T   D++S G V   +I+        
Sbjct: 173 LAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSH---P 229

Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
           FG +      + +   + + +    +K      R+ +I+      +  +  P  RP+   
Sbjct: 230 FGKSLQRQANILLGACSLDCLHP--EKHEDVIARE-LIE------KMIAMDPQKRPSAKH 280

Query: 803 VVQ 805
           V++
Sbjct: 281 VLK 283

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score =  136 bits (346), Expect = 7e-36
 Identities = 76/287 (26%), Positives = 116/287 (40%), Gaps = 35/287 (12%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            +G GG   V+   DL     VAVK L +          D     +  + E +    + H
Sbjct: 19  ILGFGGMSEVHLARDLRDHRDVAVKVLRADLA------RDPSFYLR-FRREAQNAAALNH 71

Query: 592 KNIVKLYCY----FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
             IV +Y        +     +V EY+    L D +H     +      ++     Q L 
Sbjct: 72  PAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALN 130

Query: 648 YLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           + H +G    IIHRD+K  NI++      KV DFGIA+ +   G   + T  + GT  YL
Sbjct: 131 FSHQNG----IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 186

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV 766
           +PE A       + DVYS G VL E++TG  P     GD+      VS+          V
Sbjct: 187 SPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT---GDSP-----VSV------AYQHV 232

Query: 767 LDKKLSGSFRDEMI--QVLRIAIRCTSKSPATRP-TMNEVVQLLAEA 810
            +  +  S R E +   +  + ++  +K+P  R  T  E+   L   
Sbjct: 233 REDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score =  136 bits (345), Expect = 8e-36
 Identities = 80/311 (25%), Positives = 129/311 (41%), Gaps = 46/311 (14%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
           D  +     +    ++G+G  G+V       +  N+GEVVAVKKL     +     T++ 
Sbjct: 3   DPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL-----Q---HSTEEH 54

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
             D   + E+E L +++H NIVK    CY +      L+ EY+P G+L D L K    +D
Sbjct: 55  LRD--FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 112

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
                +    + +G+ YL        IHRD+ + NIL++   + K+ DFG+ KVL     
Sbjct: 113 HIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVL----- 164

Query: 692 KDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT---GRKPVEDDF 743
                       G       APE    SK +   DV+SFGVVL EL T     K    +F
Sbjct: 165 PQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEF 224

Query: 744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRP 798
                      + V        +++  L  + R         ++  I   C + +   RP
Sbjct: 225 MRMIGNDKQGQMIV------FHLIE-LLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRP 277

Query: 799 TMNEVVQLLAE 809
           +  ++   + +
Sbjct: 278 SFRDLALRVDQ 288

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score =  136 bits (345), Expect = 1e-35
 Identities = 66/314 (21%), Positives = 104/314 (33%), Gaps = 53/314 (16%)

Query: 498 PDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVK 556
            +   S  + P   +SF + SF   + L       ++G G  G V+K      G + AVK
Sbjct: 38  SETLQSPGYDPSRPESFFQQSF---QRLS------RLGHGSYGEVFKVRSKEDGRLYAVK 88

Query: 557 KLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF---SSLYCNLLVYE 612
           +             D+ +       EV +   + +H   V+L   +     LY   L  E
Sbjct: 89  RS----MSPFRGPKDRARK----LAEVGSHEKVGQHPCCVRLEQAWEEGGILY---LQTE 137

Query: 613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN 672
                +L          L               LA+LH      ++H D+K  NI L   
Sbjct: 138 LC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPR 193

Query: 673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMEL 732
            + K+ DFG+   L    G      V  G   Y+APE        T  DV+S G+ ++E+
Sbjct: 194 GRCKLGDFGLLVEL----GTAGAGEVQEGDPRYMAPE-LLQGSYGTAADVFSLGLTILEV 248

Query: 733 ITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM-EVLDKKLSGSFRDEMIQVLRIAIRCTS 791
               +      G+    +          +G +       LS   R     VL        
Sbjct: 249 ACNMELPHG--GEGWQQLR---------QGYLPPEFTAGLSSELRS----VLV---MMLE 290

Query: 792 KSPATRPTMNEVVQ 805
             P  R T   ++ 
Sbjct: 291 PDPKLRATAEALLA 304

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  139 bits (353), Expect = 2e-35
 Identities = 82/392 (20%), Positives = 137/392 (34%), Gaps = 34/392 (8%)

Query: 41  TNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASI-GNVTSLTDLEL 99
            ++  +  + N    + +L E+S  RL  L+ + +        I  +    ++SL  L+L
Sbjct: 30  AHVNYVDLSLN---SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 100 TGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEEL-GNLTELTDLDMSVNHLSGKI 157
             N     +       L NL  L L         +       LT L  L +  N++    
Sbjct: 87  DYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 158 PESIL-RLPKLRVLQLYNNSLSGEISSVIAN--STTLTMLSLYDNSLTGEVPQDLGQWSP 214
           P S    + +  VL L  N +       + N      T+L L   +L       LG    
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 215 --------LVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRF 266
                   +  LDLS N     +  +            L    S  +  S        + 
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--GHTNFK- 262

Query: 267 RVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP 326
              N   +G      L    V   DLS +     + +   +  +L +L + +N+I+  I 
Sbjct: 263 DPDNFTFKG------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KID 315

Query: 327 SEI-YRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLN 384
               +    L+K++LS N L   I S +  NL KL +L L  N + +    S   L +L 
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

Query: 385 VLDLSNNLLTGYIPESLCELLPN--SINFSNN 414
            L L  N L   +P+ + + L +   I    N
Sbjct: 375 ELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (319), Expect = 4e-31
 Identities = 77/391 (19%), Positives = 142/391 (36%), Gaps = 45/391 (11%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKL 70
            FS +Q+L+ L +           + F  L++L +L  + N   +  +L   +   L  L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN---QFLQLETGAFNGLANL 105

Query: 71  RIMVLATCALHG-QIPASI-GNVTSLTDLELTGNFITGHIPPEI--GLLKNLRQLELYYN 126
            ++ L  C L G  +  +    +TSL  L L  N I   I P      ++    L+L +N
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFN 164

Query: 127 QQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIA 186
           +         + ++ E   L+    H       ++LRL  + +  +    L  E      
Sbjct: 165 K---------VKSICEEDLLNFQGKHF------TLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 187 NSTTLTMLSLYDNSLTGEVPQ---DLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFL 243
            +T++T L L  N     + +   D    + +  L LS +   G            +   
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG----SSFGHTNFKD-- 263

Query: 244 VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIA 302
              N     L  S      +    +S + +  ++ + + S    +  + L+ N  +    
Sbjct: 264 -PDNFTFKGLEAS-----GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 303 NTVGNARNLSELFMQRNQISGFIPSEIYRA-ISLVKIDLSDNLLSGPIPSGI-GNLKKLN 360
           N      +L +L + +N +   I S ++     L  +DLS N +   +       L  L 
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLK 374

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN 391
            L L +N+L S        L SL  + L  N
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  117 bits (296), Expect = 3e-28
 Identities = 60/347 (17%), Positives = 120/347 (34%), Gaps = 37/347 (10%)

Query: 92  TSLTDLELTGNFITGHIPPE-IGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSV 150
             +  ++L+ N I   +       L++L+ L++                L+ L  L +  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 151 NHLSGKIPESIL-RLPKLRVLQLYNNSLSGEI--SSVIANSTTLTMLSLYDNSLTGEVPQ 207
           N    ++       L  L VL L   +L G +   +     T+L ML L DN++    P 
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 208 DL-GQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL-----------QNMFSGVLPD 255
                     VLDL+ NK+   +  +     + ++F +L           +         
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVS-IIDLSYNSFSGPIANTVGNA-RNLSE 313
           +  +  ++    +S N  + S+ +        + I  L  ++     ++      ++   
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 314 LFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSS 372
              +  + S            +   DLS + +   +   +  +   L  L L  N++N  
Sbjct: 267 FTFKGLEAS-----------GVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 373 IPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLS 417
             N+   L  L  L+LS N L   I   + E L     ++ S N + 
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 36/167 (21%)

Query: 15  PMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIM 73
               ++  DLS +        SVF + T+LE L+  +N   ++ K+ +++ + LT     
Sbjct: 273 EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQN---EINKIDDNAFWGLT----- 323

Query: 74  VLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGT 132
                               L  L L+ NF+   I   +   L  L  L+L YN      
Sbjct: 324 -------------------HLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNH--IRA 361

Query: 133 IPEEL-GNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSL 177
           + ++    L  L +L +  N L   +P+ I  RL  L+ + L+ N  
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score =  136 bits (345), Expect = 2e-35
 Identities = 81/340 (23%), Positives = 134/340 (39%), Gaps = 46/340 (13%)

Query: 489 FSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREI-LEAMTEKNKVGQGGSGTVYK--- 544
           +       + D   + + +            D  +     +    ++G+G  G+V     
Sbjct: 3   YYHHHHHHDYDIPTTENLYFQGAMGSAFEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRY 62

Query: 545 --IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY--CY 600
             +  N+GEVVAVKKL     +     T++   D   + E+E L +++H NIVK    CY
Sbjct: 63  DPLQDNTGEVVAVKKL-----Q---HSTEEHLRD--FEREIEILKSLQHDNIVKYKGVCY 112

Query: 601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHR 660
            +      L+ EY+P G+L D L K    +D     +    + +G+ YL        IHR
Sbjct: 113 SAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT---KRYIHR 169

Query: 661 DIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSK 715
           D+ + NIL++   + K+ DFG+ KVL                 G       APE    SK
Sbjct: 170 DLATRNILVENENRVKIGDFGLTKVL-----PQDKEYYKVKEPGESPIFWYAPESLTESK 224

Query: 716 ATTKCDVYSFGVVLMELIT---GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
            +   DV+SFGVVL EL T     K    +F           + V        ++ + L 
Sbjct: 225 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIV------FHLI-ELLK 277

Query: 773 GSFRDEM-----IQVLRIAIRCTSKSPATRPTMNEVVQLL 807
            + R         ++  I   C + +   RP+  ++   +
Sbjct: 278 NNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRV 317

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  141 bits (357), Expect = 2e-35
 Identities = 75/425 (17%), Positives = 140/425 (32%), Gaps = 75/425 (17%)

Query: 19  LRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATC 78
              + +        F      L N ++++F  +    + KLP + +    ++ +      
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS---TMRKLPAALLDSFRQVEL------ 79

Query: 79  ALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEE- 136
                             L L    I   I          +++L + +N  +   +P   
Sbjct: 80  ------------------LNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN-AIR-YLPPHV 118

Query: 137 LGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLTMLS 195
             N+  LT L +  N LS  +P  I    PKL  L + NN+L          +T+L  L 
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 196 LYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD 255
           L  N LT  V   L     L   ++S N LS                             
Sbjct: 178 LSSNRLT-HVD--LSLIPSLFHANVSYNLLS----------------------------- 205

Query: 256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELF 315
           +LA    +     S+N +   +   +     ++I+ L +N+ +      + N   L E+ 
Sbjct: 206 TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVD 260

Query: 316 MQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPN 375
           +  N++   +     +   L ++ +S+N L   +      +  L +L L  N L   +  
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVER 318

Query: 376 SLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSG 435
           +      L  L L +N +   +  S    L N +  S+N        +L +     +   
Sbjct: 319 NQPQFDRLENLYLDHNSIV-TLKLSTHHTLKN-LTLSHNDWDCNSLRALFRNVARPAVDD 376

Query: 436 NPGLC 440
               C
Sbjct: 377 ADQHC 381

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (315), Expect = 5e-30
 Identities = 64/348 (18%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 74  VLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTI 133
           V      +  I +++       D+ +       +   E   L N + +    +  +    
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLP 67

Query: 134 PEELGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLT 192
              L +  ++  L+++   +  +I          ++ L +  N++      V  N   LT
Sbjct: 68  AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 193 MLSLYDNSLTGEVPQDLGQWSP-LVVLDLSENKLSGPLPAKVCSR-GKLQYFLVLQNMFS 250
           +L L  N L+  +P+ +   +P L  L +S N L   +          LQ   +  N  +
Sbjct: 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT 184

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARN 310
            V    +    +L    VS N L  ++         V  +D S+NS +            
Sbjct: 185 HVDLSLI---PSLFHANVSYNLLS-TLAI----PIAVEELDASHNSIN---VVRGPVNVE 233

Query: 311 LSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLN 370
           L+ L +Q N ++    + +     LV++DLS N L   +      +++L  L + +N+L 
Sbjct: 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL- 290

Query: 371 SSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLP-NSINFSNNRLS 417
            ++      + +L VLDLS+N L  ++  +  +     ++   +N + 
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  122 bits (307), Expect = 5e-29
 Identities = 69/370 (18%), Positives = 132/370 (35%), Gaps = 54/370 (14%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
               + +  L+L++     +     F     ++ L    N    +  LP      +  L 
Sbjct: 71  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN---AIRYLPPHVFQNVPLLT 126

Query: 72  IMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQL 129
           ++VL    L   +P  I  N   LT L ++ N +   I  +      +L+ L+L  N +L
Sbjct: 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN-RL 183

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
              +   L  +  L   ++S N LS     ++     +  L   +NS++  +   +    
Sbjct: 184 T-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVE- 233

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMF 249
            LT+L L  N+LT +    L  +  LV +DLS N+L                        
Sbjct: 234 -LTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNEL------------------------ 266

Query: 250 SGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR 309
             ++     + + L R  +SNN L  ++      +P + ++DLS+N     +        
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFD 324

Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKL 369
            L  L++  N I   +    +   +L  + LS N         +   + +    +     
Sbjct: 325 RLENLYLDHNSIV-TLKLSTHH--TLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQ 379

Query: 370 NSSIPNSLSS 379
           +  I   L  
Sbjct: 380 HCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (273), Expect = 7e-25
 Identities = 54/304 (17%), Positives = 107/304 (35%), Gaps = 24/304 (7%)

Query: 122 ELYYNQQL----AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL 177
           +  YN +        I   L       D+ + +           + L   +++   N+++
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 178 SGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR- 236
               ++++ +   + +L+L D  +             +  L +  N +   LP  V    
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNV 122

Query: 237 GKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYN 295
             L   ++ +N  S +          L    +SNN+LE  I +        +  + LS N
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 181

Query: 296 SFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGN 355
             +      +    +L    +  N +     S +   I++ ++D S N ++  +   +  
Sbjct: 182 RLT---HVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV-VRGPV-- 230

Query: 356 LKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSN 413
             +L +L LQ N L       L +   L  +DLS N L   I       +     +  SN
Sbjct: 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISN 287

Query: 414 NRLS 417
           NRL 
Sbjct: 288 NRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.3 bits (242), Expect = 5e-21
 Identities = 68/421 (16%), Positives = 130/421 (30%), Gaps = 42/421 (9%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
           F    +L+ L LS+N  T    LS+    +L   + + N          S++     +  
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYN--------LLSTLAIPIAVEE 215

Query: 73  MVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGT 132
           +  +  +++  +   +     LT L+L  N +T      +     L +++L YN+     
Sbjct: 216 LDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL--EK 268

Query: 133 IPEE-LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTL 191
           I       +  L  L +S N L   +      +P L+VL L +N L   +         L
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326

Query: 192 TMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSG 251
             L L  NS+   +   L     L  L LS N            R       + +N+   
Sbjct: 327 ENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC-----NSLRA------LFRNVARP 372

Query: 252 VLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNL 311
            + D+   CK   +        E   P     L ++++  +           +  +  N 
Sbjct: 373 AVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINS 432

Query: 312 SELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNL--KKLNLLMLQSNKL 369
            +         G +P +        +++   N L   +         ++  L  L +   
Sbjct: 433 VQSLSHYITQQGGVPLQ-----GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487

Query: 370 NSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGL 429
            +     L         D  N + T        +L       +           L +E +
Sbjct: 488 TNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENI 547

Query: 430 V 430
            
Sbjct: 548 A 548

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRL 67
                     L  +DLS N    +     F  +  LE L  + N   +L  L       +
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN---RLVALNL-YGQPI 300

Query: 68  TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
             L+++ L+   L   +  +      L +L L  N I   +         L+ L L +N 
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHND 356

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score =  134 bits (339), Expect = 1e-34
 Identities = 77/315 (24%), Positives = 119/315 (37%), Gaps = 52/315 (16%)

Query: 503 SSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQ 561
           SS       +     + +  + L       ++G+G  G+V K +   SG+++AVK++   
Sbjct: 5   SSGKLKISPEQHWDFTAEDLKDLG------EIGRGAYGSVNKMVHKPSGQIMAVKRI--- 55

Query: 562 RTKVSASDTDQLQ--LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNL 619
           R+ V   +  QL   LD  +++            IV+ Y          +  E M + + 
Sbjct: 56  RSTVDEKEQKQLLMDLDVVMRS-------SDCPYIVQFYGALFREGDCWICMELM-STSF 107

Query: 620 WDALHKGLVHLDWPTRH----KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP 675
                     LD         KI     + L +L   L   IIHRDIK +NILLD +   
Sbjct: 108 DKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNI 165

Query: 676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE----YAYSSKATTKCDVYSFGVVLME 731
           K+ DFGI+  L     K  T     G   Y+APE     A       + DV+S G+ L E
Sbjct: 166 KLCDFGISGQLVDSIAK--TRDA--GCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYE 221

Query: 732 LITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME----VLDKKLSGSFRDEMIQVLRIAI 787
           L TGR P    +    ++        D    +++     L       F    I  +    
Sbjct: 222 LATGRFP----YPKWNSVF-------DQLTQVVKGDPPQLSNSEEREFSPSFINFVN--- 267

Query: 788 RCTSKSPATRPTMNE 802
            C +K  + RP   E
Sbjct: 268 LCLTKDESKRPKYKE 282

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score =  134 bits (340), Expect = 1e-34
 Identities = 68/332 (20%), Positives = 122/332 (36%), Gaps = 52/332 (15%)

Query: 500 ETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKL 558
           +      F    +    +  D  E +       ++G G  G V+K     SG V+A K +
Sbjct: 13  QRKRLEAFLTQKQKVGELKDDDFEKIS------ELGAGNGGVVFKVSHKPSGLVMARKLI 66

Query: 559 WSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGN 618
                 +      + Q+ +    E++ L       IV  Y  F S     +  E+M  G+
Sbjct: 67  -----HLEIKPAIRNQIIR----ELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS 117

Query: 619 LWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA 678
           L D + K    +      K++  V +GL YL       I+HRD+K +NIL++   + K+ 
Sbjct: 118 L-DQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLC 174

Query: 679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           DFG++  L      DS      GT  Y++PE    +  + + D++S G+ L+E+  GR P
Sbjct: 175 DFGVSGQLI-----DSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYP 229

Query: 739 VEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI----------- 787
           +         +++   ++ D  E            +      +                 
Sbjct: 230 IPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPP 289

Query: 788 -----------------RCTSKSPATRPTMNE 802
                            +C  K+PA R  + +
Sbjct: 290 PKLPSGVFSLEFQDFVNKCLIKNPAERADLKQ 321

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score =  133 bits (337), Expect = 1e-34
 Identities = 67/300 (22%), Positives = 111/300 (37%), Gaps = 40/300 (13%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
            + +GQG +  V++     +G++ A+K        +S      +        E E L  +
Sbjct: 14  SDILGQGATANVFRGRHKKTGDLFAIKVF----NNISFLRPVDV-----QMREFEVLKKL 64

Query: 590 RHKNIVKLYCYFSSLYCNL--LVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQG 645
            HKNIVKL+            L+ E+ P G+L+  L        L       +   V  G
Sbjct: 65  NHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGG 124

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIA 700
           + +L  +G    I+HR+IK  NI+  +        K+ DFG A+ L+     D     + 
Sbjct: 125 MNHLRENG----IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE----DDEQFVSLY 176

Query: 701 GTYGYLAPE--------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           GT  YL P+          +  K     D++S GV      TG  P     G  +N    
Sbjct: 177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVM 236

Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP 812
             I      G +  + K  +G         +  ++     S   +  +  V+  + EAD 
Sbjct: 237 YKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSL-----SRGLQVLLTPVLANILEADQ 291

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score =  133 bits (337), Expect = 1e-34
 Identities = 76/313 (24%), Positives = 122/313 (38%), Gaps = 52/313 (16%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
           D        + +   +G+G  G V        +  +GE+VAVK L     K  A    + 
Sbjct: 24  DPTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKAL-----KADAGPQHR- 77

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
               G K E++ L  + H++I+K    C  +      LV EY+P G+L D L +    + 
Sbjct: 78  ---SGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRH--SIG 132

Query: 632 WPTRHKIAFGVAQGLAYLH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
                  A  + +G+AYLH  H      IHRD+ + N+LLD +   K+ DFG+AK +   
Sbjct: 133 LAQLLLFAQQICEGMAYLHAQH-----YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE- 186

Query: 690 GGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDF 743
            G +          G       APE     K     DV+SFGV L EL+T          
Sbjct: 187 -GHEYYR---VREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPT 242

Query: 744 GDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPAT 796
                   ++ +    +  +  + + +    G  R         +V  +   C     + 
Sbjct: 243 K-------FLELIGIAQGQMTVLRLTELLERG-ERLPRPDKCPAEVYHLMKNCWETEASF 294

Query: 797 RPTMNEVVQLLAE 809
           RPT   ++ +L  
Sbjct: 295 RPTFENLIPILKT 307

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score =  132 bits (334), Expect = 2e-34
 Identities = 73/286 (25%), Positives = 120/286 (41%), Gaps = 63/286 (22%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK-GLKTEVETLGNIR 590
           K+G+G  G V+K ID  + +VVA+K +          D ++ + +   ++ E+  L    
Sbjct: 29  KIGKGSFGEVFKGIDNRTQKVVAIKII----------DLEEAEDEIEDIQQEITVLSQCD 78

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF---GVAQGLA 647
              + K Y  +       ++ EY+  G+  D L  G +        +IA     + +GL 
Sbjct: 79  SPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPL-----DETQIATILREILKGLD 133

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH       IHRDIK+ N+LL  + + K+ADFG+A  L     K +T     GT  ++A
Sbjct: 134 YLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNT---FVGTPFWMA 187

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV- 766
           PE    S   +K D++S G+  +EL  G  P  +                      M+V 
Sbjct: 188 PEVIKQSAYDSKADIWSLGITAIELARGEPPHSE-------------------LHPMKVL 228

Query: 767 ----------LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
                     L+   S   ++  ++       C +K P+ RPT  E
Sbjct: 229 FLIPKNNPPTLEGNYSKPLKE-FVE------ACLNKEPSFRPTAKE 267

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score =  132 bits (334), Expect = 3e-34
 Identities = 71/299 (23%), Positives = 109/299 (36%), Gaps = 66/299 (22%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVETLG 587
            VG+GG G VY+  D     +VA+K +           ++ L  D   +T    E  T G
Sbjct: 41  LVGRGGMGDVYEAEDTVRERIVALKLM-----------SETLSSDPVFRTRMQREARTAG 89

Query: 588 NIRHKNIVKLY---CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            ++  ++V ++        LY   +    +   +L   L +    L  P    I   +  
Sbjct: 90  RLQEPHVVPIHDFGEIDGQLY---VDMRLINGVDLAAMLRRQ-GPLAPPRAVAIVRQIGS 145

Query: 645 GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT---VIA 700
            L   H  G      HRD+K  NIL+  +    + DFGIA         D   T      
Sbjct: 146 ALDAAHAAG----ATHRDVKPENILVSADDFAYLVDFGIA-----SATTDEKLTQLGNTV 196

Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY--------W 752
           GT  Y+APE    S AT + D+Y+   VL E +TG  P +   GD  +++          
Sbjct: 197 GTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQ---GDQLSVMGAHINQAIPR 253

Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR-PTMNEVVQLLAEA 810
            S     + GI    D                +  R  +K+P  R  T  ++      A
Sbjct: 254 PS---TVRPGIPVAFD---------------AVIARGMAKNPEDRYVTCGDLSAAAHAA 294

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score =  131 bits (333), Expect = 3e-34
 Identities = 65/273 (23%), Positives = 121/273 (44%), Gaps = 33/273 (12%)

Query: 535 GQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+GG    ++I D ++ EV A K +   ++ +        Q +K +  E+    ++ H++
Sbjct: 24  GKGGFAKCFEISDADTKEVFAGKIV--PKSLLLKPH----QREK-MSMEISIHRSLAHQH 76

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH-HG 652
           +V  + +F       +V E     +L + LHK    L  P        +  G  YLH + 
Sbjct: 77  VVGFHGFFEDNDFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRNR 135

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRD+K  N+ L+ + + K+ DFG+A  ++  G +      + GT  Y+APE   
Sbjct: 136 ----VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKV---LCGTPNYIAPEVLS 188

Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
               + + DV+S G ++  L+ G+ P E          Y   +++  K+     + K ++
Sbjct: 189 KKGHSFEVDVWSIGCIMYTLLVGKPPFET---SCLKETY---LRI--KKNEYS-IPKHIN 239

Query: 773 GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
                 +IQ      +     P  RPT+NE++ 
Sbjct: 240 PVAAS-LIQ------KMLQTDPTARPTINELLN 265

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score =  131 bits (331), Expect = 5e-34
 Identities = 65/296 (21%), Positives = 116/296 (39%), Gaps = 56/296 (18%)

Query: 530 EKNKVGQGGSGTVYKIDLN--SGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
              ++G G  G+V +        ++ VA+K L           T++   ++ ++ E + +
Sbjct: 14  ADIELGCGNFGSVRQGVYRMRKKQIDVAIKVL--------KQGTEKADTEEMMR-EAQIM 64

Query: 587 GNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
             + +  IV+L   C   +L    LV E    G L   L      +      ++   V+ 
Sbjct: 65  HQLDNPYIVRLIGVCQAEALM---LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSM 121

Query: 645 GLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           G+ YL   +      +HRD+ + N+LL   +  K++DFG++K L A    DS  T  +  
Sbjct: 122 GMKYLEEKN-----FVHRDLAARNVLLVNRHYAKISDFGLSKALGA---DDSYYTARSAG 173

Query: 703 ---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVD 758
                + APE     K +++ DV+S+GV + E ++ G+KP    +   K           
Sbjct: 174 KWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKP----YKKMKG---------- 219

Query: 759 TKEGIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
                 EV+     G  R E       ++  +   C       RP    V Q +  
Sbjct: 220 -----PEVMAFIEQG-KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRA 269

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  132 bits (335), Expect = 5e-34
 Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 38/239 (15%)

Query: 535 GQGGSGTVYKIDLNSGEVVAVKKL-------WSQRTKVSASDTDQLQLDKGLKTEVETLG 587
            QG    +   +    +  A+KK            TK +             K E++ + 
Sbjct: 40  NQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIIT 98

Query: 588 NIRHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH-------K 637
           +I+++  +      ++   +Y   ++YEYM N ++        V     T          
Sbjct: 99  DIKNEYCLTCEGIITNYDEVY---IIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKC 155

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           I   V    +Y+H+     I HRD+K +NIL+D N + K++DFG ++ +      D    
Sbjct: 156 IIKSVLNSFSYIHNEK--NICHRDVKPSNILMDKNGRVKLSDFGESEYMV-----DKKIK 208

Query: 698 VIAGTYGYLAPE-----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
              GTY ++ PE      +Y+     K D++S G+ L  +     P       +   ++
Sbjct: 209 GSRGTYEFMPPEFFSNESSYNGA---KVDIWSLGICLYVMFYNVVPFSLK--ISLVELF 262

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score =  132 bits (334), Expect = 7e-34
 Identities = 40/355 (11%), Positives = 97/355 (27%), Gaps = 61/355 (17%)

Query: 486 KRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK- 544
             R    +      E ++++ +P + ++       Q E    +     +  G    V+  
Sbjct: 24  YCREEALKEPAAMVEAVTATVWPQNAETTVDSLLSQGE--RKLKLVEPLRVGDRSVVFLV 81

Query: 545 IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL 604
            D+   E  A+K   +   + S S+ ++L               +  ++  +       L
Sbjct: 82  RDVERLEDFALKVF-TMGAENSRSELERL------HEATFAAARLLGESPEEARDRRRLL 134

Query: 605 YCN--------------------------LLVYEYM-----PNGNLWDALHKGLVHLDWP 633
             +                          LL+            +  D ++         
Sbjct: 135 LPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGIL 194

Query: 634 TRHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
             H +   + +  A L   G    ++H      N+ +  + +  + D      +      
Sbjct: 195 ALHILTAQLIRLAANLQSKG----LVHGHFTPDNLFIMPDGRLMLGDVSALWKV------ 244

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKA--TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
            +     +    Y   E+  +S A  T   + +  G+ +  +     P        K   
Sbjct: 245 GTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSW 304

Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
              S++V   + +       L    +  +I       R  +     R    E ++
Sbjct: 305 KRPSLRVPGTDSLAFGSCTPLPDFVKT-LIG------RFLNFDRRRRLLPLEAME 352

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score =  130 bits (329), Expect = 8e-34
 Identities = 61/308 (19%), Positives = 118/308 (38%), Gaps = 63/308 (20%)

Query: 517 ISFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           + +   EI  + +T   ++G G  G V          VA+K +     K  +   D+   
Sbjct: 14  LGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMI-----KEGSMSEDEFI- 67

Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR 635
                 E + + N+ H+ +V+LY   +      ++ EYM NG L + L +          
Sbjct: 68  -----EEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQL 122

Query: 636 HKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD 693
            ++   V + + YL          +HRD+ + N L++     KV+DFG+++ +      D
Sbjct: 123 LEMCKDVCEAMEYLESKQ-----FLHRDLAARNCLVNDQGVVKVSDFGLSRYVL-----D 172

Query: 694 STTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNI 749
              T   G+     +  PE    SK ++K D+++FGV++ E+ + G+ P           
Sbjct: 173 DEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP----------- 221

Query: 750 IYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPT 799
            Y               E  +    G  R        +++  ++     C  +    RPT
Sbjct: 222 -YE---------RFTNSETAEHIAQG-LRLYRPHLASEKVYTIMY---SCWHEKADERPT 267

Query: 800 MNEVVQLL 807
              ++  +
Sbjct: 268 FKILLSNI 275

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score =  133 bits (336), Expect = 8e-34
 Identities = 68/302 (22%), Positives = 111/302 (36%), Gaps = 44/302 (14%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
            + +GQG +  V++     +G++ A+K        +S               E E L  +
Sbjct: 14  SDILGQGATANVFRGRHKKTGDLFAIKVF----NNISFLRPVD-----VQMREFEVLKKL 64

Query: 590 RHKNIVKLYCYFSSLYCNL--LVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQG 645
            HKNIVKL+            L+ E+ P G+L+  L        L       +   V  G
Sbjct: 65  NHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGG 124

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTVIA 700
           + +L  +G    I+HR+IK  NI+  +        K+ DFG A+ L+     D     + 
Sbjct: 125 MNHLRENG----IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE----DDEQFVSLY 176

Query: 701 GTYGYLAPE--------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           GT  YL P+          +  K     D++S GV      TG  P     G  +N    
Sbjct: 177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVM 236

Query: 753 VSIKVDTKEGIMEVLDKKLSGS--FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
             I      G +  + K  +G   +  +M     +       S   +  +  V+  + EA
Sbjct: 237 YKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSL-------SRGLQVLLTPVLANILEA 289

Query: 811 DP 812
           D 
Sbjct: 290 DQ 291

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score =  131 bits (331), Expect = 1e-33
 Identities = 77/319 (24%), Positives = 128/319 (40%), Gaps = 68/319 (21%)

Query: 511 VKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-----IDLNSGEVVAVKKLWSQRTKV 565
           +K   RI F + E+     +   +G G  GTV+K        +    V +K +     + 
Sbjct: 3   MKVLARI-FKETEL----RKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVI-----ED 52

Query: 566 SASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL 623
            +       +       +  +G++ H +IV+L   C  SSL    LV +Y+P G+L D +
Sbjct: 53  KSGRQSFQAV---TD-HMLAIGSLDHAHIVRLLGLCPGSSLQ---LVTQYLPLGSLLDHV 105

Query: 624 HKGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFG 681
            +    L           +A+G+ YL  H      ++HR++ + N+LL    Q +VADFG
Sbjct: 106 RQHRGALGPQLLLNWGVQIAKGMYYLEEHG-----MVHRNLAARNVLLKSPSQVQVADFG 160

Query: 682 IAKVLQARGGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRK 737
           +A +L      D    + +       ++A E  +  K T + DV+S+GV + EL+T G +
Sbjct: 161 VADLLP----PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAE 216

Query: 738 PVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCT 790
           P            Y          G+   EV D    G  R        I V  + ++C 
Sbjct: 217 P------------YA---------GLRLAEVPDLLEKG-ERLAQPQICTIDVYMVMVKCW 254

Query: 791 SKSPATRPTMNEVVQLLAE 809
                 RPT  E+      
Sbjct: 255 MIDENIRPTFKELANEFTR 273

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  130 bits (328), Expect = 1e-33
 Identities = 70/276 (25%), Positives = 118/276 (42%), Gaps = 41/276 (14%)

Query: 535 GQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+G  G VY   +  +  ++A+K L   ++++     ++  ++  L+ E+E   ++RH N
Sbjct: 23  GKGKFGNVYLAREKQNKFIMALKVL--FKSQL-----EKEGVEHQLRREIEIQSHLRHPN 75

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           I+++Y YF     +Y   L+ E+ P G L+  L K     D          +A  L Y H
Sbjct: 76  ILRMYNYFHDRKRIY---LMLEFAPRGELYKELQKH-GRFDEQRSATFMEELADALHYCH 131

Query: 651 -HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
                  +IHRDIK  N+L+    + K+ADFG +    A   +  T     GT  YL PE
Sbjct: 132 ERK----VIHRDIKPENLLMGYKGELKIADFGWSV--HAPSLRRRTM---CGTLDYLPPE 182

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
                    K D++  GV+  E + G  P +     +    +   + VD K         
Sbjct: 183 MIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDS---PSHTETHRRIVNVDLK------FPP 233

Query: 770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            LS   +D + ++LR         P  R  +  V++
Sbjct: 234 FLSDGSKDLISKLLR-------YHPPQRLPLKGVME 262

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score =  130 bits (329), Expect = 1e-33
 Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 44/283 (15%)

Query: 534 VGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G VY   DL++   +A+K+       +   D+   Q    L  E+    +++HK
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKE-------IPERDSRYSQP---LHEEIALHKHLKHK 79

Query: 593 NIVKLYCYFSSLYCNLLVY---EYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGLA 647
           NIV+   Y  S   N  +    E +P G+L   L    G +  +  T       + +GL 
Sbjct: 80  NIVQ---YLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLK 136

Query: 648 YLHHGLLSPIIHRDIKSTNILLD-VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           YLH    + I+HRDIK  N+L++  +   K++DFG +K L        T     GT  Y+
Sbjct: 137 YLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTET---FTGTLQYM 190

Query: 707 APEYAYSSK--ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           APE             D++S G  ++E+ TG+ P   + G+ +  ++    KV   +   
Sbjct: 191 APEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPF-YELGEPQAAMF----KVGMFKVHP 245

Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           E + + +S   +  +++       C    P  R        LL
Sbjct: 246 E-IPESMSAEAKAFILK-------CFEPDPDKRAC---ANDLL 277

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score =  131 bits (331), Expect = 1e-33
 Identities = 62/276 (22%), Positives = 114/276 (41%), Gaps = 39/276 (14%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+GG    ++  D ++ EV A K +   ++ +        Q +K +  E+    ++ H++
Sbjct: 50  GKGGFAKCFEISDADTKEVFAGKIV--PKSLLLKPH----QREK-MSMEISIHRSLAHQH 102

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH-HG 652
           +V  + +F       +V E     +L + LHK    L  P        +  G  YLH + 
Sbjct: 103 VVGFHGFFEDNDFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRNR 161

Query: 653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY 712
               +IHRD+K  N+ L+ + + K+ DFG+A  ++  G +      + GT  Y+APE   
Sbjct: 162 ----VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKV---LCGTPNYIAPEVLS 214

Query: 713 SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLS 772
               + + DV+S G ++  L+ G+ P E                      + E   +   
Sbjct: 215 KKGHSFEVDVWSIGCIMYTLLVGKPPFET-------------------SCLKETYLRIKK 255

Query: 773 GSFR--DEMIQVLRIAI-RCTSKSPATRPTMNEVVQ 805
             +     +  V    I +     P  RPT+NE++ 
Sbjct: 256 NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLN 291

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score =  130 bits (329), Expect = 1e-33
 Identities = 68/308 (22%), Positives = 115/308 (37%), Gaps = 67/308 (21%)

Query: 515 HRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
           ++   +  E L       ++G G  G V+K     +G V+AVK++   R   +  +  ++
Sbjct: 20  YQAEINDLENLG------EMGSGTCGQVWKMRFRKTGHVIAVKQM---RRSGNKEENKRI 70

Query: 574 QLDKGLKTEVETLGN-IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
                   +++ +        IV+ +  F +     +  E M          +    +  
Sbjct: 71  L------MDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQGPIPE 123

Query: 633 PTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
               K+   + + L YL       +IHRD+K +NILLD   Q K+ DFGI+  L     K
Sbjct: 124 RILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAK 181

Query: 693 DSTTTVIAGTYGYLAPE-----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK 747
           D +    AG   Y+APE              + DV+S G+ L+EL TG+ P ++      
Sbjct: 182 DRS----AGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNC----- 232

Query: 748 NIIYWVSIKVDTKEGIMEVL-------------DKKLSGSFRDEMIQVLRIAIRCTSKSP 794
                        +   EVL                 SG F+   ++       C +K  
Sbjct: 233 -------------KTDFEVLTKVLQEEPPLLPGHMGFSGDFQS-FVK------DCLTKDH 272

Query: 795 ATRPTMNE 802
             RP  N+
Sbjct: 273 RKRPKYNK 280

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score =  129 bits (326), Expect = 2e-33
 Identities = 73/295 (24%), Positives = 121/295 (41%), Gaps = 62/295 (21%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             ++G G  G V+     + + VA+K +     +  A   +          E E +  + 
Sbjct: 13  VQEIGSGQFGLVHLGYWLNKDKVAIKTI-----REGAMSEEDFI------EEAEVMMKLS 61

Query: 591 HKNIVKLY--CYFSS-LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
           H  +V+LY  C   + +    LV E+M +G L D L          T   +   V +G+A
Sbjct: 62  HPKLVQLYGVCLEQAPIC---LVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMA 118

Query: 648 YL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT--- 702
           YL         +IHRD+ + N L+  N   KV+DFG+ + +      D   T   GT   
Sbjct: 119 YLEEAC-----VIHRDLAARNCLVGENQVIKVSDFGMTRFVL-----DDQYTSSTGTKFP 168

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             + +PE    S+ ++K DV+SFGV++ E+ + G+ P            Y          
Sbjct: 169 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIP------------YE--------- 207

Query: 762 GI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
                EV++   +G FR          V +I   C  + P  RP  + +++ LAE
Sbjct: 208 NRSNSEVVEDISTG-FRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAE 261

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score =  133 bits (337), Expect = 2e-33
 Identities = 80/304 (26%), Positives = 130/304 (42%), Gaps = 61/304 (20%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D  EI  E++  + K+G G  G V+    N    VAVK +     K  +   +       
Sbjct: 181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTM-----KPGSMSVEAFL---- 231

Query: 579 LKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPT 634
              E   +  ++H  +VKL+       +Y   ++ E+M  G+L D L   +G      P 
Sbjct: 232 --AEANVMKTLQHDKLVKLHAVVTKEPIY---IITEFMAKGSLLDFLKSDEGS-KQPLPK 285

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
               +  +A+G+A++        IHRD+++ NIL+  +   K+ADFG+A+V++     D+
Sbjct: 286 LIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIE-----DN 337

Query: 695 TTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII 750
             T   G      + APE       T K DV+SFG++LME++T GR P            
Sbjct: 338 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIP------------ 385

Query: 751 YWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMNEV 803
           Y          G+   EV+     G +R         ++  I +RC    P  RPT   +
Sbjct: 386 YP---------GMSNPEVIRALERG-YRMPRPENCPEELYNIMMRCWKNRPEERPTFEYI 435

Query: 804 VQLL 807
             +L
Sbjct: 436 QSVL 439

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score =  129 bits (326), Expect = 2e-33
 Identities = 76/312 (24%), Positives = 127/312 (40%), Gaps = 64/312 (20%)

Query: 518 SFDQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQ 572
           S    EI  E +     +G+G  G V++   +   +  + VA+K       K   SD+  
Sbjct: 6   STRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTC-----KNCTSDS-- 58

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
              +K L+ E  T+    H +IVKL      + ++   ++ E    G L   L      L
Sbjct: 59  -VREKFLQ-EALTMRQFDHPHIVKLIGVITENPVW---IIMELCTLGELRSFLQVRKYSL 113

Query: 631 DWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
           D  +    A+ ++  LAYL          +HRDI + N+L+  N   K+ DFG+++ ++ 
Sbjct: 114 DLASLILYAYQLSTALAYLESKR-----FVHRDIAARNVLVSSNDCVKLGDFGLSRYME- 167

Query: 689 RGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
               DST    +   G L     APE     + T+  DV+ FGV + E++  G KP    
Sbjct: 168 ----DSTYYKASK--GKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKP---- 217

Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATR 797
           F   KN                +V+ +  +G  R  M       +  +  +C +  P+ R
Sbjct: 218 FQGVKN---------------NDVIGRIENG-ERLPMPPNCPPTLYSLMTKCWAYDPSRR 261

Query: 798 PTMNEVVQLLAE 809
           P   E+   L+ 
Sbjct: 262 PRFTELKAQLST 273

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score =  128 bits (325), Expect = 2e-33
 Identities = 74/305 (24%), Positives = 126/305 (41%), Gaps = 65/305 (21%)

Query: 521 QREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
             E+  E +T   ++G G  G V          VAVK +     K  +   D+       
Sbjct: 2   HMELKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMI-----KEGSMSEDEFF----- 51

Query: 580 KTEVETLGNIRHKNIVKLY--CYFSS-LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
             E +T+  + H  +VK Y  C     +Y   +V EY+ NG L + L      L+     
Sbjct: 52  -QEAQTMMKLSHPKLVKFYGVCSKEYPIY---IVTEYISNGCLLNYLRSHGKGLEPSQLL 107

Query: 637 KIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
           ++ + V +G+A+L  H       IHRD+ + N L+D +   KV+DFG+ + +      D 
Sbjct: 108 EMCYDVCEGMAFLESHQ-----FIHRDLAARNCLVDRDLCVKVSDFGMTRYVL-----DD 157

Query: 695 TTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII 750
                 GT     + APE  +  K ++K DV++FG+++ E+ + G+ P    +    N  
Sbjct: 158 QYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMP----YDLYTN-- 211

Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNE 802
                         EV+ K   G  R        D + Q++     C  + P  RPT  +
Sbjct: 212 -------------SEVVLKVSQG-HRLYRPHLASDTIYQIMY---SCWHELPEKRPTFQQ 254

Query: 803 VVQLL 807
           ++  +
Sbjct: 255 LLSSI 259

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  132 bits (334), Expect = 3e-33
 Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 30/272 (11%)

Query: 491 KQRAITEPDE---TLSSSF-FPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-I 545
           K+R +    E   +LS +  F +   +    S   + + +       +G G  G V    
Sbjct: 96  KRRPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAF 155

Query: 546 DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF--SS 603
           +  + + VA++ +   + K +     +      ++TE+E L  + H  I+K+  +F    
Sbjct: 156 ERKTCKKVAIRII--SKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 213

Query: 604 LYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLH-HGLLSPIIHRD 661
            Y   +V E M  G L+D +       L   T     + +   + YLH +G    IIHRD
Sbjct: 214 YY---IVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHENG----IIHRD 264

Query: 662 IKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE---YAYSSK 715
           +K  N+LL    +    K+ DFG +K+L    G+ S    + GT  YLAPE      ++ 
Sbjct: 265 LKPENVLLSSQEEDCLIKITDFGHSKIL----GETSLMRTLCGTPTYLAPEVLVSVGTAG 320

Query: 716 ATTKCDVYSFGVVLMELITGRKPVEDDFGDNK 747
                D +S GV+L   ++G  P  +      
Sbjct: 321 YNRAVDCWSLGVILFICLSGYPPFSEHRTQVS 352

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score =  128 bits (325), Expect = 3e-33
 Identities = 68/309 (22%), Positives = 115/309 (37%), Gaps = 68/309 (22%)

Query: 515 HRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
             +  D  E +       ++G+G  G V K   + SG+++AVK++     + + +  +Q 
Sbjct: 2   MEVKADDLEPIM------ELGRGAYGVVEKMRHVPSGQIMAVKRI-----RATVNSQEQK 50

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
           +L   L     ++  +     V  Y          +  E M + +L D  +K ++     
Sbjct: 51  RLLMDLDI---SMRTVDCPFTVTFYGALFREGDVWICMELM-DTSL-DKFYKQVIDKGQT 105

Query: 634 TR----HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
                  KIA  + + L +LH  L   +IHRD+K +N+L++   Q K+ DFGI+  L   
Sbjct: 106 IPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDD 163

Query: 690 GGKDSTTTVIAGTYGYLAPE----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD 745
             K        G   Y+APE           + K D++S G+ ++EL   R P +     
Sbjct: 164 VAK---DIDA-GCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW--- 216

Query: 746 NKNIIYWVSIKVDTKEGIMEVL------------DKKLSGSFRDEMIQVLRIAIRCTSKS 793
                              + L              K S  F D          +C  K+
Sbjct: 217 ---------------GTPFQQLKQVVEEPSPQLPADKFSAEFVD-FTS------QCLKKN 254

Query: 794 PATRPTMNE 802
              RPT  E
Sbjct: 255 SKERPTYPE 263

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  130 bits (329), Expect = 4e-33
 Identities = 50/358 (13%), Positives = 108/358 (30%), Gaps = 79/358 (22%)

Query: 490 SKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLN 548
           + +   +  D  +S+S +    + F   S         +     +GQ       +  D  
Sbjct: 39  TSEYMQSAADSLVSTSLWNTG-QPFRVESELGERPRTLVRGT-VLGQEDPYAYLEATDQE 96

Query: 549 SGEVVAVKKLWSQRTKVSASDTDQL-------QLDKGLKTEVETLGNIR----------- 590
           +GE   V        +  ++   Q+       +L +G+K + +   ++R           
Sbjct: 97  TGESFEVHVP-YFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDP 155

Query: 591 -HKNIVKLYCYFSSLY-CNLLVYEYMPNGNLWDALHKGLVH------LDWPTRHKIAFGV 642
             K ++++      ++  +          NL       L H      L    R ++   V
Sbjct: 156 QKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQV 215

Query: 643 AQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
            + LA LH +G    ++H  ++  +I+LD      +  F           +D    V + 
Sbjct: 216 IRLLASLHHYG----LVHTYLRPVDIVLDQRGGVFLTGFEHLV-------RDGARVVSSV 264

Query: 702 TYGYLAPEY-----------AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
           + G+  PE               +  T   D ++ G+V+  +     P            
Sbjct: 265 SRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP----ITK----- 315

Query: 751 YWVSIKVDTKEGIMEVL---DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
                  D   G  E +    K +    R  +++               R    + ++
Sbjct: 316 -------DAALGGSEWIFRSCKNIPQPVRA-LLE------GFLRYPKEDRLLPLQAME 359

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score =  129 bits (326), Expect = 5e-33
 Identities = 74/310 (23%), Positives = 125/310 (40%), Gaps = 73/310 (23%)

Query: 532 NKVGQGGSGTVYK----IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
             +G G  GTVYK     +    ++ VA+K+L     + + S     ++   L  E   +
Sbjct: 21  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-----REATSPKANKEI---LD-EAYVM 71

Query: 587 GNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ 644
            ++ + ++ +L   C  S++    L+ + MP G L D + +   ++           +A+
Sbjct: 72  ASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128

Query: 645 GLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL-------QARGGKDST 695
           G+ YL         ++HRD+ + N+L+      K+ DFG+AK+L        A GGK   
Sbjct: 129 GMNYLEDRR-----LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK--- 180

Query: 696 TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVS 754
              I       A E       T + DV+S+GV + EL+T G KP            Y   
Sbjct: 181 -VPIKWM----ALESILHRIYTHQSDVWSYGVTVWELMTFGSKP------------YD-- 221

Query: 755 IKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                  GI   E+      G  R        I V  I ++C      +RP   E++   
Sbjct: 222 -------GIPASEISSILEKG-ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF 273

Query: 808 AE--ADPCRF 815
           ++   DP R+
Sbjct: 274 SKMARDPQRY 283

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score =  134 bits (340), Expect = 6e-33
 Identities = 59/290 (20%), Positives = 99/290 (34%), Gaps = 62/290 (21%)

Query: 533 KVGQGGSGTVYK-IDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            +  GG G +Y  +D N +G  V +K L      V + D +   +      E + L  + 
Sbjct: 87  CIAHGGLGWIYLALDRNVNGRPVVLKGL------VHSGDAEAQAM---AMAERQFLAEVV 137

Query: 591 HKNIVKLYCY--------FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
           H +IV+++ +            Y   +V EY+   +L  +  +    L           +
Sbjct: 138 HPSIVQIFNFVEHTDRHGDPVGY---IVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEI 191

Query: 643 AQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
              L+YLH  G    +++ D+K  NI+L    Q K+ D G    +      +S   +  G
Sbjct: 192 LPALSYLHSIG----LVYNDLKPENIMLTEE-QLKLIDLGAVSRI------NSFGYLY-G 239

Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
           T G+ APE    +  T   D+Y+ G  L  L          +                  
Sbjct: 240 TPGFQAPEIV-RTGPTVATDIYTVGRTLAALTLDLPTRNGRY---------------VDG 283

Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-TMNEVVQLLAEA 810
              +    K   S+        R+  R     P  R  T  E+   L   
Sbjct: 284 LPEDDPVLKTYDSYG-------RLLRRAIDPDPRQRFTTAEEMSAQLTGV 326

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score =  128 bits (323), Expect = 6e-33
 Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 31/217 (14%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T   K+GQG SGTVY  +D+ +G+ VA++++      +      +L     +  E+  + 
Sbjct: 23  TRFEKIGQGASGTVYTAMDVATGQEVAIRQM-----NLQQQPKKEL-----IINEILVMR 72

Query: 588 NIRHKNIVKLY-CYF--SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF---G 641
             ++ NIV     Y     L+   +V EY+  G+L D + +  +         IA     
Sbjct: 73  ENKNPNIVNYLDSYLVGDELW---VVMEYLAGGSLTDVVTETCMDEGQ-----IAAVCRE 124

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
             Q L +LH    + +IHRDIKS NILL ++   K+ DFG    +     K ST   + G
Sbjct: 125 CLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST---MVG 178

Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           T  ++APE         K D++S G++ +E+I G  P
Sbjct: 179 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score =  128 bits (323), Expect = 1e-32
 Identities = 75/306 (24%), Positives = 123/306 (40%), Gaps = 57/306 (18%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQ 574
             REI    +  +  +G G SG V           +V VA+K L     K   ++  +  
Sbjct: 42  FTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKAL-----KAGYTERQRRD 96

Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
               L  E   +G   H NI++L    +     ++V EYM NG+L   L           
Sbjct: 97  F---LS-EASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQ 152

Query: 635 RHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
              +  GV  G+ YL          +HRD+ + N+L+D N   KV+DFG+++VL+     
Sbjct: 153 LVGMLRGVGAGMRYLSDLG-----YVHRDLAARNVLVDSNLVCKVSDFGLSRVLE----- 202

Query: 693 DSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDN 746
           D        T G +     APE       ++  DV+SFGVV+ E++  G +P    + + 
Sbjct: 203 DDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERP----YWNM 258

Query: 747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMN 801
            N                +V+     G +R          + ++ + C  K  A RP  +
Sbjct: 259 TN---------------RDVISSVEEG-YRLPAPMGCPHALHQLMLDCWHKDRAQRPRFS 302

Query: 802 EVVQLL 807
           ++V +L
Sbjct: 303 QIVSVL 308

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score =  128 bits (323), Expect = 1e-32
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 34/226 (15%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D R +L++     K+G+G +G V    + +SG  VAVK +      +      +L     
Sbjct: 42  DPRLLLDSY---VKIGEGSTGIVCLAREKHSGRQVAVKMM-----DLRKQQRREL----- 88

Query: 579 LKTEVETLGNIRHKNIVKLY-CYF--SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR 635
           L  EV  + + +H N+V++Y  Y     L+   ++ E++  G L D + +  +       
Sbjct: 89  LFNEVVIMRDYQHFNVVEMYKSYLVGEELW---VLMEFLQGGALTDIVSQVRL-----NE 140

Query: 636 HKIAF---GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
            +IA     V Q LAYLH      +IHRDIKS +ILL ++ + K++DFG    +     K
Sbjct: 141 EQIATVCEAVLQALAYLHA---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK 197

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
             +   + GT  ++APE    S   T+ D++S G++++E++ G  P
Sbjct: 198 RKS---LVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPP 240

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score =  126 bits (320), Expect = 1e-32
 Identities = 68/316 (21%), Positives = 118/316 (37%), Gaps = 70/316 (22%)

Query: 517 ISFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEV----VAVKKLWSQRTKVSASDTD 571
           +   Q  I  E +     +G+G  G VY+    + +     VAVK       K   +   
Sbjct: 2   MGGPQYGIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTC-----KKDCTLD- 55

Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVH 629
               +K +  E   + N+ H +IVKL         +   ++ E  P G L   L +    
Sbjct: 56  --NKEKFMS-EAVIMKNLDHPHIVKLIGIIEEEPTW---IIMELYPYGELGHYLERNKNS 109

Query: 630 LDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ 687
           L   T    +  + + +AYL   +      +HRDI   NIL+      K+ DFG+++ ++
Sbjct: 110 LKVLTLVLYSLQICKAMAYLESIN-----CVHRDIAVRNILVASPECVKLGDFGLSRYIE 164

Query: 688 ARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
                D      +     L     +PE     + TT  DV+ F V + E+++ G++P   
Sbjct: 165 -----DEDYYKASV--TRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQP--- 214

Query: 742 DFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKS 793
            F   +N                +V+     G  R          +  ++    RC    
Sbjct: 215 -FFWLEN---------------KDVIGVLEKG-DRLPKPDLCPPVLYTLMT---RCWDYD 254

Query: 794 PATRPTMNEVVQLLAE 809
           P+ RP   E+V  L++
Sbjct: 255 PSDRPRFTELVCSLSD 270

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score =  127 bits (321), Expect = 2e-32
 Identities = 76/290 (26%), Positives = 117/290 (40%), Gaps = 53/290 (18%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK-GLKTEVETLGNIR 590
            +G G +  V         E VA+K++          + ++ Q     L  E++ +    
Sbjct: 22  VIGSGATAVVQAAYCAPKKEKVAIKRI----------NLEKCQTSMDELLKEIQAMSQCH 71

Query: 591 HKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR----HKIAF--- 640
           H NIV  Y  F     L+   LV + +  G++ D +   +   +  +       IA    
Sbjct: 72  HPNIVSYYTSFVVKDELW---LVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILR 128

Query: 641 GVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST---T 696
            V +GL YLH +G     IHRD+K+ NILL  +   ++ADFG++  L   G         
Sbjct: 129 EVLEGLEYLHKNG----QIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRK 184

Query: 697 TVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDD------FGDNKNI 749
           T + GT  ++APE     +    K D++SFG+  +EL TG  P                 
Sbjct: 185 TFV-GTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLM----LT 239

Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT 799
           +      ++T     E + KK   SFR  MI        C  K P  RPT
Sbjct: 240 LQNDPPSLETGVQDKE-MLKKYGKSFRK-MIS------LCLQKDPEKRPT 281

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score =  126 bits (319), Expect = 2e-32
 Identities = 71/293 (24%), Positives = 112/293 (38%), Gaps = 56/293 (19%)

Query: 533 KVGQGGSGTVYKIDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           ++G G  GTV K      +V   VAVK L     K  A   D    D+ L  E   +  +
Sbjct: 24  ELGSGNFGTVKKGYYQMKKVVKTVAVKIL-----KNEA--NDPALKDELLA-EANVMQQL 75

Query: 590 RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
            +  IV++   C   S     LV E    G L   L +   H+      ++   V+ G+ 
Sbjct: 76  DNPYIVRMIGICEAESWM---LVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMK 131

Query: 648 YL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT--- 702
           YL   +      +HRD+ + N+LL   +  K++DFG++K L+A    ++           
Sbjct: 132 YLEESN-----FVHRDLAARNVLLVTQHYAKISDFGLSKALRA---DENYYKAQTHGKWP 183

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             + APE     K ++K DV+SFGV++ E  + G+KP    +   K              
Sbjct: 184 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP----YRGMKG------------- 226

Query: 762 GIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
              EV      G  R         ++  +   C +     RP    V   L  
Sbjct: 227 --SEVTAMLEKG-ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRN 276

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score =  127 bits (321), Expect = 2e-32
 Identities = 74/337 (21%), Positives = 121/337 (35%), Gaps = 58/337 (17%)

Query: 529 TEKNKVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
             +  + +GG   VY+  D+ SG   A+K+       + +++ ++ +    +  EV  + 
Sbjct: 31  RVRRVLAEGGFAFVYEAQDVGSGREYALKR-------LLSNEEEKNRA---IIQEVCFMK 80

Query: 588 NIR-HKNIVKLYCYFSSLY-------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRH--K 637
            +  H NIV+     S             L+   +  G L + L K             K
Sbjct: 81  KLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLK 140

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
           I +   + + ++H     PIIHRD+K  N+LL      K+ DFG A  +        +  
Sbjct: 141 IFYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQ 199

Query: 698 VIA---------GTYGYLAPE--YAYSSK-ATTKCDVYSFGVVLMELITGRKPVEDDFGD 745
             A          T  Y  PE    YS+     K D+++ G +L  L   + P ED    
Sbjct: 200 RRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFED---- 255

Query: 746 NKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIR-CTSKSPATRPTMNEVV 804
                             + +++ K S    D    V    IR     +P  R ++ EVV
Sbjct: 256 ---------------GAKLRIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVV 300

Query: 805 QLLAEADPCRFESCKFPNKS----NKESSNATKIKNP 837
             L E    R  + K P       N    +AT  + P
Sbjct: 301 HQLQEIAAARNVNPKSPITELLEQNGGYGSATLSRGP 337

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score =  129 bits (325), Expect = 2e-32
 Identities = 41/351 (11%), Positives = 90/351 (25%), Gaps = 66/351 (18%)

Query: 490 SKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLN 548
           + +   +  D  +S+S +             +R           +GQ       +  D  
Sbjct: 44  TSEYMQSAADSLVSTSLWNTGQPFRVESELGERPRTLVRGTV--LGQEDPYAYLEATDQE 101

Query: 549 SGEVVAVKKLWSQRTKVSASDTDQLQ-------LDKGLKTEVETLGNIR---------HK 592
           +GE   V        +  ++   Q++       L +G+K + +   ++R           
Sbjct: 102 TGESFEVHVP-YFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDP 160

Query: 593 NIVKLYC-------YFSSLYCNLLVYEYMPNGNLWDALHKGLV---HLDWPTRHKIAFGV 642
              K+          +      L            + L         L    R ++   V
Sbjct: 161 QKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQV 220

Query: 643 AQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
            + LA LH +G    ++H  ++  +I+LD      +  F       A     S       
Sbjct: 221 IRLLASLHHYG----LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASA--VSPIGRGFA 274

Query: 702 TYGYLAPEYAYSSKA-----TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK 756
                A       +      T   D ++ G+ +  +     P      D           
Sbjct: 275 PPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLP----NTD----------- 319

Query: 757 VDTKEGIMEVLDKKLSGSFR--DEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
               +  +   +            +  +L             R    + ++
Sbjct: 320 ----DAALGGSEWIFRSCKNIPQPVRALLE---GFLRYPKEDRLLPLQAME 363

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score =  125 bits (317), Expect = 4e-32
 Identities = 70/315 (22%), Positives = 113/315 (35%), Gaps = 72/315 (22%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQ 572
           I  ++            +G+G  G VY    ID     +  A+K L              
Sbjct: 16  IPHERVVT----HSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSL-----SRITEMQQV 66

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
               +    E   +  + H N++ L             ++  YM +G+L   +     + 
Sbjct: 67  EAFLR----EGLLMRGLNHPNVLALIGIM-LPPEGLPHVLLPYMCHGDLLQFIRSPQRNP 121

Query: 631 DWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
                      VA+G+ YL          +HRD+ + N +LD ++  KVADFG+A+ +  
Sbjct: 122 TVKDLISFGLQVARGMEYLAEQK-----FVHRDLAARNCMLDESFTVKVADFGLARDIL- 175

Query: 689 RGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDD 742
                   +V    +  L     A E   + + TTK DV+SFGV+L EL+T G  P    
Sbjct: 176 ---DREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPP---- 228

Query: 743 FGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSK 792
                   Y           I   ++      G  R        D + QV++   +C   
Sbjct: 229 --------YR---------HIDPFDLTHFLAQG-RRLPQPEYCPDSLYQVMQ---QCWEA 267

Query: 793 SPATRPTMNEVVQLL 807
            PA RPT   +V  +
Sbjct: 268 DPAVRPTFRVLVGEV 282

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score =  128 bits (324), Expect = 6e-32
 Identities = 71/308 (23%), Positives = 120/308 (38%), Gaps = 65/308 (21%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL-GNI 589
           +  +G G SGTV       G  VAVK++              +        E++ L  + 
Sbjct: 20  EKILGYGSSGTVVFQGSFQGRPVAVKRM-------------LIDFCDIALMEIKLLTESD 66

Query: 590 RHKNIVKLYCYFSS---LYCNLLVYEYMPNGNLWD------ALHKGLVHLDWPTRHKIAF 640
            H N+++ YC  ++   LY   +  E   N NL D         + L          +  
Sbjct: 67  DHPNVIRYYCSETTDRFLY---IALELC-NLNLQDLVESKNVSDENLKLQKEYNPISLLR 122

Query: 641 GVAQGLAYLH-HGLLSPIIHRDIKSTNILLDV-------------NYQPKVADFGIAKVL 686
            +A G+A+LH       IIHRD+K  NIL+               N +  ++DFG+ K L
Sbjct: 123 QIASGVAHLHSLK----IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKL 178

Query: 687 QA-RGGKDSTTTVIAGTYGYLAPE-------YAYSSKATTKCDVYSFGVVLMELIT-GRK 737
            + +    +     +GT G+ APE            + T   D++S G V   +++ G+ 
Sbjct: 179 DSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKH 238

Query: 738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR 797
           P  D +    NII      + + + +  + D+ L     D +I       +     P  R
Sbjct: 239 PFGDKYSRESNIIR----GIFSLDEMKCLHDRSLIAEATD-LIS------QMIDHDPLKR 287

Query: 798 PTMNEVVQ 805
           PT  +V++
Sbjct: 288 PTAMKVLR 295

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score =  125 bits (315), Expect = 6e-32
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 66/295 (22%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             ++G G  G V+    N    VAVK L     K  +   D          E   +  ++
Sbjct: 18  VERLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPDAFL------AEANLMKQLQ 66

Query: 591 HKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFGVAQGL 646
           H+ +V+LY       +Y   ++ EYM NG+L D L    G+  L       +A  +A+G+
Sbjct: 67  HQRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGI-KLTINKLLDMAAQIAEGM 122

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT---Y 703
           A++        IHRD+++ NIL+      K+ADFG+A+++     +D+  T   G     
Sbjct: 123 AFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-----EDNEYTAREGAKFPI 174

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
            + APE       T K DV+SFG++L E++T GR P            Y          G
Sbjct: 175 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP------------YP---------G 213

Query: 763 I--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           +   EV+     G +R        +E+ Q++R    C  + P  RPT + +  +L
Sbjct: 214 MTNPEVIQNLERG-YRMVRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVL 264

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score =  127 bits (321), Expect = 6e-32
 Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 29/221 (13%)

Query: 532 NKVGQGGS--GTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
             +G+G     TV       +GE V V+++      + A   + +     L+ E+     
Sbjct: 31  TVIGKGFEDLMTVNLARYKPTGEYVTVRRI-----NLEACSNEMVTF---LQGELHVSKL 82

Query: 589 IRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVH-LDWPTRHKIAFGVAQ 644
             H NIV     F   + L+   +V  +M  G+  D +    +  ++      I  GV +
Sbjct: 83  FNHPNIVPYRATFIADNELW---VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLK 139

Query: 645 GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA--- 700
            L Y+H  G     +HR +K+++IL+ V+ +  ++       + + G +           
Sbjct: 140 ALDYIHHMG----YVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYS 195

Query: 701 -GTYGYLAPEYAYSSKA--TTKCDVYSFGVVLMELITGRKP 738
                +L+PE    +      K D+YS G+   EL  G  P
Sbjct: 196 VKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVP 236

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score =  127 bits (321), Expect = 7e-32
 Identities = 72/306 (23%), Positives = 122/306 (39%), Gaps = 57/306 (18%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGE----VVAVKKLWSQRTKVSASDTDQLQ 574
             +E+    ++    VG G  G V    L         VA+K L     KV  ++  +  
Sbjct: 38  FAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTL-----KVGYTEKQR-- 90

Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
             +    E   +G   H NI++L    +     ++V EYM NG+L   L K         
Sbjct: 91  --RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148

Query: 635 RHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
              +  G+A G+ YL          +HRD+ + NIL++ N   KV+DFG+ +VL+     
Sbjct: 149 LVGMLRGIASGMKYLSDMG-----YVHRDLAARNILINSNLVCKVSDFGLGRVLE----- 198

Query: 693 DSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDN 746
           D          G +     +PE     K T+  DV+S+G+VL E+++ G +P    + + 
Sbjct: 199 DDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP----YWEM 254

Query: 747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMN 801
            N                +V+     G +R          + ++ + C  K    RP   
Sbjct: 255 SN---------------QDVIKAVDEG-YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298

Query: 802 EVVQLL 807
           ++V +L
Sbjct: 299 QIVSIL 304

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score =  128 bits (324), Expect = 8e-32
 Identities = 86/304 (28%), Positives = 133/304 (43%), Gaps = 55/304 (18%)

Query: 517 ISFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           ++ D  EI  E++  + K+GQG  G V+    N    VA+K L     K      +    
Sbjct: 174 LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-----KPGTMSPEAFL- 227

Query: 576 DKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLD 631
                 E + +  +RH+ +V+LY       +Y   +V EYM  G+L D L    G  +L 
Sbjct: 228 -----QEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGK-YLR 278

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
            P    +A  +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++    
Sbjct: 279 LPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE--DN 333

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII 750
           + +          + APE A   + T K DV+SFG++L EL T GR P            
Sbjct: 334 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP------------ 381

Query: 751 YWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMNEV 803
           Y          G+   EVLD+   G +R          +  +  +C  K P  RPT   +
Sbjct: 382 YP---------GMVNREVLDQVERG-YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYL 431

Query: 804 VQLL 807
              L
Sbjct: 432 QAFL 435

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score =  125 bits (317), Expect = 8e-32
 Identities = 78/309 (25%), Positives = 130/309 (42%), Gaps = 58/309 (18%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEV-----VAVKKLWSQRTKVSASDTDQL 573
              EI    +T +  +G G  G VYK  L +        VA+K L     K   ++  ++
Sbjct: 37  FTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTL-----KAGYTEKQRV 91

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
                L  E   +G   H NI++L    S     +++ EYM NG L   L +        
Sbjct: 92  DF---LG-EAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVL 147

Query: 634 TRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
               +  G+A G+ YL   +      +HRD+ + NIL++ N   KV+DFG+++VL+    
Sbjct: 148 QLVGMLRGIAAGMKYLANMN-----YVHRDLAARNILVNSNLVCKVSDFGLSRVLE---- 198

Query: 692 KDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGD 745
            D        + G +     APE     K T+  DV+SFG+V+ E++T G +P    + +
Sbjct: 199 -DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP----YWE 253

Query: 746 NKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTM 800
             N                EV+     G FR          + ++ ++C  +  A RP  
Sbjct: 254 LSN---------------HEVMKAINDG-FRLPTPMDCPSAIYQLMMQCWQQERARRPKF 297

Query: 801 NEVVQLLAE 809
            ++V +L +
Sbjct: 298 ADIVSILDK 306

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score =  124 bits (314), Expect = 1e-31
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 68/300 (22%)

Query: 532 NKVGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
             +G+G  G VY    +D +  ++  AVK L            +  Q       E   + 
Sbjct: 31  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL-----NRITDIGEVSQFLT----EGIIMK 81

Query: 588 NIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           +  H N++ L   C  S     L+V  YM +G+L + +     +            VA+G
Sbjct: 82  DFSHPNVLSLLGICLRSEGS-PLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG 140

Query: 646 LAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           + YL          +HRD+ + N +LD  +  KVADFG+A+ +          +V   T 
Sbjct: 141 MKYLASKK-----FVHRDLAARNCMLDEKFTVKVADFGLARDMY----DKEYYSVHNKTG 191

Query: 704 GYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKV 757
             L     A E   + K TTK DV+SFGV+L EL+T G  P            Y      
Sbjct: 192 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP------------YP----- 234

Query: 758 DTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                +   ++    L G  R        D + +V+    +C       RP+ +E+V  +
Sbjct: 235 ----DVNTFDITVYLLQG-RRLLQPEYCPDPLYEVML---KCWHPKAEMRPSFSELVSRI 286

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score =  124 bits (314), Expect = 1e-31
 Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 25/211 (11%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+G+G  G+VYK I   +G++VA+K++              LQ    +  E+  +    
Sbjct: 35  EKLGEGSYGSVYKAIHKETGQIVAIKQV---------PVESDLQE---IIKEISIMQQCD 82

Query: 591 HKNIVKLY-CYF--SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
             ++VK Y  YF  + L+   +V EY   G++ D +      L       I     +GL 
Sbjct: 83  SPHVVKYYGSYFKNTDLW---IVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLE 139

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH       IHRDIK+ NILL+     K+ADFG+A  L     K    TVI GT  ++A
Sbjct: 140 YLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVI-GTPFWMA 193

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           PE           D++S G+  +E+  G+ P
Sbjct: 194 PEVIQEIGYNCVADIWSLGITAIEMAEGKPP 224

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score =  130 bits (327), Expect = 1e-31
 Identities = 64/300 (21%), Positives = 118/300 (39%), Gaps = 56/300 (18%)

Query: 526 EAMTEKNKVGQGGSGTVYK--IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
             +    ++G G  G+V +    +   ++ VA+K L           T++   ++ ++ E
Sbjct: 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVL--------KQGTEKADTEEMMR-E 386

Query: 583 VETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
            + +  + +  IV+L   C   +L    LV E    G L   L      +      ++  
Sbjct: 387 AQIMHQLDNPYIVRLIGVCQAEALM---LVMEMAGGGPLHKFLVGKREEIPVSNVAELLH 443

Query: 641 GVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
            V+ G+ YL   +      +HR++ + N+LL   +  K++DFG++K L A    DS  T 
Sbjct: 444 QVSMGMKYLEEKN-----FVHRNLAARNVLLVNRHYAKISDFGLSKALGA---DDSYYTA 495

Query: 699 IAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVS 754
            +       + APE     K +++ DV+S+GV + E ++ G+KP    +   K       
Sbjct: 496 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKP----YKKMKG------ 545

Query: 755 IKVDTKEGIMEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
                     EV+     G  R E       ++  +   C       RP    V Q +  
Sbjct: 546 ---------PEVMAFIEQG-KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRA 595

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score =  128 bits (324), Expect = 2e-31
 Identities = 78/307 (25%), Positives = 129/307 (42%), Gaps = 61/307 (19%)

Query: 518 SFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQL 575
           ++D+ E+    +T K+K+G G  G VY+       + VAVK L     K    + ++   
Sbjct: 211 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-----KEDTMEVEEFL- 264

Query: 576 DKGLKTEVETLGNIRHKNIVKLY--CYFSS-LYCNLLVYEYMPNGNLWDALHK-GLVHLD 631
                 E   +  I+H N+V+L   C      Y   ++ E+M  GNL D L +     + 
Sbjct: 265 -----KEAAVMKEIKHPNLVQLLGVCTREPPFY---IITEFMTYGNLLDYLRECNRQEVS 316

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
                 +A  ++  + YL        IHR++ + N L+  N+  KVADFG+++++     
Sbjct: 317 AVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMT---- 369

Query: 692 KDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNK 747
              T T  AG      + APE    +K + K DV++FGV+L E+ T G  P         
Sbjct: 370 -GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP--------- 419

Query: 748 NIIYWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTM 800
              Y          GI   +V +      +R E       +V  +   C   +P+ RP+ 
Sbjct: 420 ---YP---------GIDLSQVYELLEKD-YRMERPEGCPEKVYELMRACWQWNPSDRPSF 466

Query: 801 NEVVQLL 807
            E+ Q  
Sbjct: 467 AEIHQAF 473

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score =  123 bits (311), Expect = 2e-31
 Identities = 78/312 (25%), Positives = 133/312 (42%), Gaps = 71/312 (22%)

Query: 518 SFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEV-VAVKKLWSQRTKVSASDTDQLQL 575
           ++D+ E+    +T K+K+G G  G VY+       + VAVK L     K    + ++   
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-----KEDTMEVEEFL- 57

Query: 576 DKGLKTEVETLGNIRHKNIVKLY--CYFSS-LYCNLLVYEYMPNGNLWDALHK-GLVHLD 631
                 E   +  I+H N+V+L   C      Y   ++ E+M  GNL D L +     + 
Sbjct: 58  -----KEAAVMKEIKHPNLVQLLGVCTREPPFY---IITEFMTYGNLLDYLRECNRQEVS 109

Query: 632 WPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
                 +A  ++  + YL   +      IHRD+ + N L+  N+  KVADFG+++++   
Sbjct: 110 AVVLLYMATQISSAMEYLEKKN-----FIHRDLAARNCLVGENHLVKVADFGLSRLMT-- 162

Query: 690 GGKDSTTTVIAGT---YGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGD 745
                T T  AG      + APE    +K + K DV++FGV+L E+ T G  P       
Sbjct: 163 ---GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP------- 212

Query: 746 NKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPA 795
                Y          GI   +V +      +R        +++ +++R    C   +P+
Sbjct: 213 -----YP---------GIDLSQVYELLEKD-YRMERPEGCPEKVYELMR---ACWQWNPS 254

Query: 796 TRPTMNEVVQLL 807
            RP+  E+ Q  
Sbjct: 255 DRPSFAEIHQAF 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  127 bits (321), Expect = 2e-31
 Identities = 74/411 (18%), Positives = 143/411 (34%), Gaps = 49/411 (11%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
            +     +  L +L  ++N  T    L +   TNL  L+ + N      KL    +  LT
Sbjct: 56  DMTGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSN------KLTNLDVTPLT 106

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
           KL  +   T  L       +     LT L    N +T  I   +     L +L+ + N++
Sbjct: 107 KLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK 160

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
           +      ++   T+LT LD S N ++      + +   L  L    N+++ ++   +  +
Sbjct: 161 I---TKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQN 211

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
             LT L    N LT     D+   + L   D S N L+  L     S  KL     +Q  
Sbjct: 212 IQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT-ELDVSTLS--KLTTLHCIQTD 265

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNA 308
              +    L     L+ F+         +   +     + ++D      +      +   
Sbjct: 266 LLEI---DLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQN 317

Query: 309 RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK 368
             L  L++   +++    S       L  +   +  +     S +G +  LN       +
Sbjct: 318 PKLVYLYLNNTELTELDVSHN---TKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQ 372

Query: 369 LNSSIPNSLSSLK-----SLNVLDLSNNLLT-GYIPESLCELLPNSINFSN 413
             +    +L++       S ++LD   N +        + +   N+I + N
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWEN 423

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  118 bits (298), Expect = 2e-28
 Identities = 66/357 (18%), Positives = 119/357 (33%), Gaps = 38/357 (10%)

Query: 62  SSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQL 121
           +  F        V A   +      S   + +LT L+   + IT      I  L  L +L
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKL 69

Query: 122 ELYYNQQLAGTIPE-ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
               N      I   +L   T LT L    N L+  +   +  L KL  L    N L+  
Sbjct: 70  ICTSNN-----ITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-- 119

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
               ++ +  LT L+   N+LT     D+   + L  LD   NK    L     +  +L 
Sbjct: 120 -KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT--QLT 173

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP 300
                 N  + +    +++ K L R     N++   +   +     ++ +D S N  +  
Sbjct: 174 TLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-- 225

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
               V     L+      N ++    S +     L  +      L   I   + +  +L 
Sbjct: 226 -EIDVTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLE-ID--LTHNTQLI 278

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLS 417
               +  +    +   ++    L +LD     +T  +  S    L   +  +N  L+
Sbjct: 279 YFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELDLSQNPKL-VYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  117 bits (295), Expect = 5e-28
 Identities = 64/406 (15%), Positives = 132/406 (32%), Gaps = 43/406 (10%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
           +  D+ P  N      +         +S   L  L  L  + +    +  +    I +LT
Sbjct: 10  SFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS---SITDMTG--IEKLT 64

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
            L  ++  +  +   +   +   T+LT L    N +T ++   +  L  L  L    N+ 
Sbjct: 65  GLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL 118

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
               +   +     LT L+ + N L+ +I   +    +L  L  + N    ++   +   
Sbjct: 119 --TKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQ 169

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
           T LT L    N +T     D+ Q   L  L+   N ++  L        +L +     N 
Sbjct: 170 TQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITK-LDLNQNI--QLTFLDCSSNK 223

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNA 308
            + +    +     L  F  S N L   +     +L  ++ +              + + 
Sbjct: 224 LTEI---DVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL---EIDLTHN 274

Query: 309 RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK 368
             L     +  +    +  ++     L  +D     ++  +   +    KL  L L + +
Sbjct: 275 TQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTE 329

Query: 369 LNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNN 414
           L + +   +S    L  L   N  +  +        L N+      
Sbjct: 330 L-TELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQ 372

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score =  126 bits (319), Expect = 4e-31
 Identities = 77/313 (24%), Positives = 122/313 (38%), Gaps = 65/313 (20%)

Query: 511 VKSFHRISFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASD 569
           V +          + ++ +     +G+G  G V   D   G  VAVK +     K  A+ 
Sbjct: 177 VAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCI-----KNDATA 230

Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSS--LYCNLLVYEYMPNGNLWDALHK 625
              L        E   +  +RH N+V+L          LY   +V EYM  G+L D L  
Sbjct: 231 QAFLA-------EASVMTQLRHSNLVQLLGVIVEEKGGLY---IVTEYMAKGSLVDYLRS 280

Query: 626 -GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK 684
            G   L      K +  V + + YL     +  +HRD+ + N+L+  +   KV+DFG+ K
Sbjct: 281 RGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK 337

Query: 685 VL--QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
                   GK      +     + APE     K +TK DV+SFG++L E+ + GR P   
Sbjct: 338 EASSTQDTGK------LP--VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP--- 386

Query: 742 DFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSP 794
                    Y           I   +V+ +   G ++ +        V  +   C     
Sbjct: 387 ---------YP---------RIPLKDVVPRVEKG-YKMDAPDGCPPAVYDVMKNCWHLDA 427

Query: 795 ATRPTMNEVVQLL 807
           ATRPT  ++ + L
Sbjct: 428 ATRPTFLQLREQL 440

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score =  127 bits (321), Expect = 5e-31
 Identities = 86/306 (28%), Positives = 133/306 (43%), Gaps = 55/306 (17%)

Query: 515 HRISFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
             ++ D  EI  E++  + K+GQG  G V+    N    VA+K L     K      +  
Sbjct: 255 QGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-----KPGTMSPEAF 309

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVH 629
                   E + +  +RH+ +V+LY       +Y   +V EYM  G+L D L    G  +
Sbjct: 310 L------QEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGK-Y 359

Query: 630 LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
           L  P    +A  +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++  
Sbjct: 360 LRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-- 414

Query: 690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKN 748
             + +          + APE A   + T K DV+SFG++L EL T GR P          
Sbjct: 415 DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP---------- 464

Query: 749 IIYWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSKSPATRPTMN 801
             Y          G+   EVLD+   G +R          +  +  +C  K P  RPT  
Sbjct: 465 --YP---------GMVNREVLDQVERG-YRMPCPPECPESLHDLMCQCWRKEPEERPTFE 512

Query: 802 EVVQLL 807
            +   L
Sbjct: 513 YLQAFL 518

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score =  129 bits (324), Expect = 5e-31
 Identities = 75/299 (25%), Positives = 119/299 (39%), Gaps = 44/299 (14%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K ++G GG G V + I  ++GE VA+K+    R ++S  + ++         E++ +  +
Sbjct: 19  KERLGTGGFGYVLRWIHQDTGEQVAIKQC---RQELSPKNRERW------CLEIQIMKKL 69

Query: 590 RHKNIVKLYCYFSSL------YCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHKIAFG 641
            H N+V        L         LL  EY   G+L   L   +    L       +   
Sbjct: 70  NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSD 129

Query: 642 VAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTT 697
           ++  L YLH +     IIHRD+K  NI+L    Q    K+ D G AK L     +    T
Sbjct: 130 ISSALRYLHENR----IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELD----QGELCT 181

Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-----------GDN 746
              GT  YLAPE     K T   D +SFG +  E ITG +P   ++             N
Sbjct: 182 EFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSN 241

Query: 747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           ++I+ +  +    K   +      LSG    ++ + L+  +         R T  +   
Sbjct: 242 EHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMW---HQRQRGTDPQNPN 297

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score =  121 bits (307), Expect = 5e-31
 Identities = 75/302 (24%), Positives = 117/302 (38%), Gaps = 84/302 (27%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
              +G+G  G V   D   G  VAVK +     K  A+    L        E   +  +R
Sbjct: 26  LQTIGKGEFGDVMLGDYR-GNKVAVKCI-----KNDATAQAFLA-------EASVMTQLR 72

Query: 591 HKNIVKLY--CYFSS--LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQG 645
           H N+V+L          LY   +V EYM  G+L D L   G   L      K +  V + 
Sbjct: 73  HSNLVQLLGVIVEEKGGLY---IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 129

Query: 646 LAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL--QARGGKDSTTTVIAG 701
           + YL  ++      +HRD+ + N+L+  +   KV+DFG+ K        GK         
Sbjct: 130 MEYLEGNN-----FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK--------- 175

Query: 702 TYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSI 755
               L     APE     K +TK DV+SFG++L E+ + GR P            Y    
Sbjct: 176 ----LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP------------YP--- 216

Query: 756 KVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
                  I   +V+ +   G ++          + +V++    C     A RP+  ++ +
Sbjct: 217 ------RIPLKDVVPRVEKG-YKMDAPDGCPPAVYEVMK---NCWHLDAAMRPSFLQLRE 266

Query: 806 LL 807
            L
Sbjct: 267 QL 268

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score =  128 bits (323), Expect = 7e-31
 Identities = 84/392 (21%), Positives = 154/392 (39%), Gaps = 83/392 (21%)

Query: 438 GLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKRRFSKQRAITE 497
           G C  V  N + ++F + P  +  R L SI  +  +            +++  +   ++ 
Sbjct: 316 GYCRLV--NGATQSFIIRPQKEGERALPSIPKLANN------------EKQGVRSHTVSV 361

Query: 498 PDETLSSSFFPYDVKSFHRISFDQREIL-EAMTEKNKVGQGGSGTVYK---IDLNSGEV- 552
            +    +     +  ++   S    EI  E +     +G+G  G V++   +   +  + 
Sbjct: 362 SETDDYAEIIDEE-DTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMA 420

Query: 553 VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLV 610
           VA+K       K   SD+     +K L+ E  T+    H +IVKL      + ++   ++
Sbjct: 421 VAIKTC-----KNCTSDS---VREKFLQ-EALTMRQFDHPHIVKLIGVITENPVW---II 468

Query: 611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNIL 668
            E    G L   L      LD  +    A+ ++  LAYL          +HRDI + N+L
Sbjct: 469 MELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKR-----FVHRDIAARNVL 523

Query: 669 LDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVY 723
           +  N   K+ DFG+++ ++     DST      + G L     APE     + T+  DV+
Sbjct: 524 VSSNDCVKLGDFGLSRYME-----DSTYY--KASKGKLPIKWMAPESINFRRFTSASDVW 576

Query: 724 SFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFRDEM- 779
            FGV + E++  G KP            +          G+   +V+ +  +G  R  M 
Sbjct: 577 MFGVCMWEILMHGVKP------------FQ---------GVKNNDVIGRIENG-ERLPMP 614

Query: 780 ----IQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                 +  +  +C +  P+ RP   E+   L
Sbjct: 615 PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQL 646

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score =  121 bits (306), Expect = 9e-31
 Identities = 58/309 (18%), Positives = 114/309 (36%), Gaps = 75/309 (24%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
            E  K+G G  G+V+K +    G + A+K+  S++    + D            EV    
Sbjct: 14  HELEKIGSGEFGSVFKCVKRLDGCIYAIKR--SKKPLAGSVDEQNAL------REVYAHA 65

Query: 588 NI-RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDAL---HKGLVHLDWPTRHKIAF 640
            + +H ++V+ +  +     +    +  EY   G+L DA+   ++ + +        +  
Sbjct: 66  VLGQHSHVVRYFSAWAEDDHML---IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLL 122

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP-------------------KVADFG 681
            V +GL Y+H      ++H DIK +NI +     P                   K+ D G
Sbjct: 123 QVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLG 179

Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPE-----YAYSSKATTKCDVYSFGVVLMELITGR 736
               +       S+  V  G   +LA E     Y +  KA    D+++  + ++      
Sbjct: 180 HVTRI-------SSPQVEEGDSRFLANEVLQENYTHLPKA----DIFALALTVVCAAGAE 228

Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
                     +N   W  I    ++G +  + + LS  F + +++            P  
Sbjct: 229 PL-------PRNGDQWHEI----RQGRLPRIPQVLSQEFTE-LLK------VMIHPDPER 270

Query: 797 RPTMNEVVQ 805
           RP+   +V+
Sbjct: 271 RPSAMALVK 279

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score =  121 bits (305), Expect = 2e-30
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 34/219 (15%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            ++G G  G VYK  +  +G + A K        +     ++L+       E+E L    
Sbjct: 25  GELGDGAFGKVYKAKNKETGALAAAKV-------IETKSEEELED---YIVEIEILATCD 74

Query: 591 HKNIVKLY-CYF--SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF---GVAQ 644
           H  IVKL   Y+    L+   ++ E+ P G +   + +    L   T  +I      + +
Sbjct: 75  HPYIVKLLGAYYHDGKLW---IMIEFCPGGAVDAIMLELDRGL---TEPQIQVVCRQMLE 128

Query: 645 GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            L +LH      IIHRD+K+ N+L+ +    ++ADFG++        K    + I GT  
Sbjct: 129 ALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQK--RDSFI-GTPY 182

Query: 705 YLAPEYAYSSKAT-----TKCDVYSFGVVLMELITGRKP 738
           ++APE              K D++S G+ L+E+     P
Sbjct: 183 WMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPP 221

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score =  122 bits (307), Expect = 2e-30
 Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 26/242 (10%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           +S   + + +       +G G  G V    +  + + VA+K +   + K +     +   
Sbjct: 1   MSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKII--SKRKFAIGSAREADP 58

Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYF--SSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDW 632
              ++TE+E L  + H  I+K+  +F     Y   +V E M  G L+D +       L  
Sbjct: 59  ALNVETEIEILKKLNHPCIIKIKNFFDAEDYY---IVLELMEGGELFDKVVGNK--RLKE 113

Query: 633 PTRHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQA 688
            T     + +   + YLH +G    IIHRD+K  N+LL   + +   K+ DFG +K+L  
Sbjct: 114 ATCKLYFYQMLLAVQYLHENG----IIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL-- 167

Query: 689 RGGKDSTTTVIAGTYGYLAPE---YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD 745
             G+ S    + GT  YLAPE      ++      D +S GV+L   ++G  P  +    
Sbjct: 168 --GETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ 225

Query: 746 NK 747
             
Sbjct: 226 VS 227

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score =  121 bits (306), Expect = 2e-30
 Identities = 69/302 (22%), Positives = 118/302 (39%), Gaps = 75/302 (24%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-R 590
            VG G  G VYK   + +G++ A+K +      V+  + ++++       E+  L     
Sbjct: 31  LVGNGTYGQVYKGRHVKTGQLAAIKVM-----DVTGDEEEEIK------QEINMLKKYSH 79

Query: 591 HKNIVKLY-CYFSSLYCNL-----LVYEYMPNGNLWDALHKGLVHLDWP-TRHKIAF--- 640
           H+NI   Y  +       +     LV E+   G++ D +               IA+   
Sbjct: 80  HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIK---NTKGNTLKEEWIAYICR 136

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            + +GL++LH      +IHRDIK  N+LL  N + K+ DFG++  L    G+    T I 
Sbjct: 137 EILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR--RNTFI- 190

Query: 701 GTYGYLAPEYAYSSKAT-----TKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI 755
           GT  ++APE     +        K D++S G+  +E+  G  P+ D              
Sbjct: 191 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCD-------------- 236

Query: 756 KVDTKEGIMEVL------------DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV 803
                   M  L             KK S  F+  +         C  K+ + RP   ++
Sbjct: 237 -----MHPMRALFLIPRNPAPRLKSKKWSKKFQSFIES-------CLVKNHSQRPATEQL 284

Query: 804 VQ 805
           ++
Sbjct: 285 MK 286

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score =  122 bits (308), Expect = 3e-30
 Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 66/299 (22%)

Query: 532 NKVGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
             +G+G  G VY    +D +  ++  AVK L            +  Q       E   + 
Sbjct: 95  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL-----NRITDIGEVSQFLT----EGIIMK 145

Query: 588 NIRHKNIVKLY-CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           +  H N++ L      S    L+V  YM +G+L + +     +            VA+G+
Sbjct: 146 DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 205

Query: 647 AYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            +L          +HRD+ + N +LD  +  KVADFG+A+ +          +V   T  
Sbjct: 206 KFLASKK-----FVHRDLAARNCMLDEKFTVKVADFGLARDMY----DKEFDSVHNKTGA 256

Query: 705 YL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVD 758
            L     A E   + K TTK DV+SFGV+L EL+T G  P            Y       
Sbjct: 257 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP------------YP------ 298

Query: 759 TKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
               +   ++    L G  R        D + +V+    +C       RP+ +E+V  +
Sbjct: 299 ---DVNTFDITVYLLQG-RRLLQPEYCPDPLYEVML---KCWHPKAEMRPSFSELVSRI 350

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score =  121 bits (305), Expect = 4e-30
 Identities = 84/335 (25%), Positives = 125/335 (37%), Gaps = 85/335 (25%)

Query: 490 SKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLN 548
           +  RA +  D  ++  FF  D +            L       ++G G  G VY   D+ 
Sbjct: 31  AGGRAGSLKDPDVAELFFKDDPEKLF-------SDLR------EIGHGSFGAVYFARDVR 77

Query: 549 SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY-CYF--SSLY 605
           + EVVA+KK+    +       ++ Q    +  EV  L  +RH N ++   CY    + +
Sbjct: 78  NSEVVAIKKM----SYSGKQSNEKWQD---IIKEVRFLQKLRHPNTIQYRGCYLREHTAW 130

Query: 606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF---GVAQGLAYLHHGLLSPIIHRDI 662
              LV EY   G+  D L      L      +IA    G  QGLAYLH      +IHRD+
Sbjct: 131 ---LVMEYCL-GSASDLLEVHKKPLQ---EVEIAAVTHGALQGLAYLHS---HNMIHRDV 180

Query: 663 KSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT---K 719
           K+ NILL      K+ DFG A ++          + + GT  ++APE   +        K
Sbjct: 181 KAGNILLSEPGLVKLGDFGSASIMAPA------NSFV-GTPYWMAPEVILAMDEGQYDGK 233

Query: 720 CDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL------------ 767
            DV+S G+  +EL   + P+ +                      M  L            
Sbjct: 234 VDVWSLGITCIELAERKPPLFN-------------------MNAMSALYHIAQNESPALQ 274

Query: 768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
               S  FR+  +        C  K P  RPT   
Sbjct: 275 SGHWSEYFRN-FVD------SCLQKIPQDRPTSEV 302

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score =  120 bits (303), Expect = 6e-30
 Identities = 78/316 (24%), Positives = 122/316 (38%), Gaps = 89/316 (28%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           ++ +G+G  G V K  +    +    A+K++     K  AS  D          E+E L 
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRM-----KEYASKDDHRDFAG----ELEVLC 80

Query: 588 NI-RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL---------------WDALHKGLVH 629
            +  H NI+ L   C         L  EY P+GNL               +   +     
Sbjct: 81  KLGHHPNIINLLGACEHRGYLY--LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAST 138

Query: 630 LDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ 687
           L        A  VA+G+ YL          IHRD+ + NIL+  NY  K+ADFG+++   
Sbjct: 139 LSSQQLLHFAADVARGMDYLSQKQ-----FIHRDLAARNILVGENYVAKIADFGLSR--- 190

Query: 688 ARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED 741
                      +  T G L     A E    S  TT  DV+S+GV+L E+++ G  P   
Sbjct: 191 ------GQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP--- 241

Query: 742 DFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTS 791
                    Y          G+   E+ +K   G +R        DE+  ++R   +C  
Sbjct: 242 ---------YC---------GMTCAELYEKLPQG-YRLEKPLNCDDEVYDLMR---QCWR 279

Query: 792 KSPATRPTMNEVVQLL 807
           + P  RP+  +++  L
Sbjct: 280 EKPYERPSFAQILVSL 295

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  123 bits (311), Expect = 8e-30
 Identities = 91/426 (21%), Positives = 160/426 (37%), Gaps = 34/426 (7%)

Query: 22  LDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALH 81
           +D S N      P  +       +L+ ++N    + +L  S I  L+KLRI++++   + 
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQN---YISELWTSDILSLSKLRILIISHNRIQ 58

Query: 82  GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLT 141
               +       L  L+L+ N +   I        NL+ L+L +N   A  I +E GN++
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 142 ELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSL 201
           +L  L +S  HL       I  L   +VL +   +   +              SL+    
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFP 173

Query: 202 TGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS----- 256
           T +    +   S   V +L  + +   L    CS        +  N     L  +     
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 257 ---------LARCKNLLRFRVSNNHLEGSIPEGIL-----SLPHVSIIDLSYNSFSGPIA 302
                    L     +  F +SN  L+G +          SL  +SI  +  + F  P +
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 303 NTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLL 362
                  N++      +           +    + +D S+NLL+  +    G+L +L  L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 363 MLQSNKLNS--SIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSG 418
           +LQ N+L     I    + +KSL  LD+S N ++    +  C    +  S+N S+N L+ 
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 419 PIPLSL 424
            I   L
Sbjct: 414 TIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (292), Expect = 2e-27
 Identities = 86/435 (19%), Positives = 157/435 (36%), Gaps = 44/435 (10%)

Query: 9   TLPD--FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF- 65
            L    F   Q L  LDLS+N       +S     NL+ L  + N       LP    F 
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNA---FDALPICKEFG 112

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYY 125
            +++L+ + L+T  L       I ++     L + G        P    L++     L+ 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHI 170

Query: 126 NQQLAGTIPE------------ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLY 173
                                 EL N+  + + +     LS  I   +   PKL  L L 
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS--ILAKLQTNPKLSNLTLN 228

Query: 174 NNSLSGEISSVI---ANSTTLTMLSLYDNSLTGEVPQDLGQWSP-----LVVLDLSENKL 225
           N   +      I      TT+   S+ +  L G++      +S      L +  +  +  
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 226 SGPLPAKVCSRGKLQYFLVLQNMFSGVLPD-SLARCKNLLRFRVSNNHLEGSIPEGILSL 284
             P  + +                + ++     ++    L    SNN L  ++ E    L
Sbjct: 289 GFP-QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347

Query: 285 PHVSIIDLSYNSFS--GPIANTVGNARNLSELFMQRNQISGFIPSEI-YRAISLVKIDLS 341
             +  + L  N       IA      ++L +L + +N +S            SL+ +++S
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 342 DNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESL 401
            N+L+  I   +    ++ +L L SNK+  SIP  +  L++L  L++++N L   +P+ +
Sbjct: 408 SNILTDTIFRCL--PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK-SVPDGI 463

Query: 402 CELLPN--SINFSNN 414
            + L +   I    N
Sbjct: 464 FDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.9 bits (223), Expect = 8e-19
 Identities = 62/302 (20%), Positives = 107/302 (35%), Gaps = 38/302 (12%)

Query: 5   YLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNL---TNLEVLSFNENP--GFKLWKL 59
           Y    L        L  L L+N   T    + +  L   T +   S +     G   ++ 
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267

Query: 60  PESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLR 119
            + S   L  L I  + +              +++     T +            +    
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327

Query: 120 QLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLS--GKIPESILRLPKLRVLQLYNNSL 177
            L+   N  L  T+ E  G+LTEL  L + +N L    KI E   ++  L+ L +  NS+
Sbjct: 328 HLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

Query: 178 -SGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR 236
              E     + + +L  L++  N LT  + + L     + VLDL  NK+           
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK---------- 434

Query: 237 GKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYN 295
                           +P  + + + L    V++N L+ S+P+GI   L  +  I L  N
Sbjct: 435 ---------------SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

Query: 296 SF 297
            +
Sbjct: 479 PW 480

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score =  118 bits (299), Expect = 8e-30
 Identities = 61/315 (19%), Positives = 109/315 (34%), Gaps = 82/315 (26%)

Query: 531 KNKVGQGGSGTVYK---IDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
             ++G+   G VYK        GE    VA+K L     K  A    + +       E  
Sbjct: 14  MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTL-----KDKAEGPLREEFRH----EAM 64

Query: 585 TLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL---------------WDALHKGL 627
               ++H N+V L             +++ Y  +G+L                D      
Sbjct: 65  LRARLQHPNVVCLLGVVTKDQPLS--MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVK 122

Query: 628 VHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV 685
             L+ P    +   +A G+ YL  HH     ++H+D+ + N+L+      K++D G+ + 
Sbjct: 123 SALEPPDFVHLVAQIAAGMEYLSSHH-----VVHKDLATRNVLVYDKLNVKISDLGLFRE 177

Query: 686 LQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPV 739
           +       +           L     APE     K +   D++S+GVVL E+ + G +P 
Sbjct: 178 VY------AADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQP- 230

Query: 740 EDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFRDEM-----IQVLRIAIRCTSK 792
                      Y          G    +V++   +              V  + I C ++
Sbjct: 231 -----------YC---------GYSNQDVVEMIRNR-QVLPCPDDCPAWVYALMIECWNE 269

Query: 793 SPATRPTMNEVVQLL 807
            P+ RP   ++   L
Sbjct: 270 FPSRRPRFKDIHSRL 284

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score =  119 bits (300), Expect = 1e-29
 Identities = 75/335 (22%), Positives = 117/335 (34%), Gaps = 83/335 (24%)

Query: 509 YDVKSFHRISFDQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGE---VVAVKKLWSQ 561
           Y          D +E+  + +T    +G G  G VY+     + +      VAVK L   
Sbjct: 12  YCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTL--- 68

Query: 562 RTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL 619
                 S+ D+L        E   +    H+NIV+       S      ++ E M  G+L
Sbjct: 69  --PEVCSEQDELDFLM----EALIISKFNHQNIVRCIGVSLQSLPRF--ILMELMAGGDL 120

Query: 620 WDALHKGLVHLDWPTR------HKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDV 671
              L +       P+         +A  +A G  YL  +H      IHRDI + N LL  
Sbjct: 121 KSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH-----FIHRDIAARNCLLTC 175

Query: 672 ---NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVY 723
                  K+ DFG+A+ +     + S      G    L      PE       T+K D +
Sbjct: 176 PGPGRVAKIGDFGMARDIY----RASYYRK--GGCAMLPVKWMPPEAFMEGIFTSKTDTW 229

Query: 724 SFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR---- 776
           SFGV+L E+ + G  P            Y               EVL+   SG  R    
Sbjct: 230 SFGVLLWEIFSLGYMP------------YP---------SKSNQEVLEFVTSG-GRMDPP 267

Query: 777 ----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                 + +++    +C    P  RP    +++ +
Sbjct: 268 KNCPGPVYRIMT---QCWQHQPEDRPNFAIILERI 299

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score =  118 bits (298), Expect = 2e-29
 Identities = 78/357 (21%), Positives = 134/357 (37%), Gaps = 89/357 (24%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK-----IDLNSGEV-VAVKKLWSQRTKVSASDTDQ 572
           D+ E+  E +T   ++GQG  G VY+     +  +  E  VA+K +       +AS  ++
Sbjct: 18  DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTV-----NEAASMRER 72

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL------- 623
           ++       E   +      ++V+L             ++ E M  G+L   L       
Sbjct: 73  IEFLN----EASVMKEFNCHHVVRLLGVVSQGQPTL--VIMELMTRGDLKSYLRSLRPAM 126

Query: 624 --HKGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVAD 679
             +  L         ++A  +A G+AYL  +       +HRD+ + N ++  ++  K+ D
Sbjct: 127 ANNPVLAPPSLSKMIQMAGEIADGMAYLNANK-----FVHRDLAARNCMVAEDFTVKIGD 181

Query: 680 FGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT 734
           FG+ + +        T     G  G L     +PE       TT  DV+SFGVVL E+ T
Sbjct: 182 FGMTRDIY------ETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT 235

Query: 735 -GRKPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVL 783
              +P            Y          G+   +VL   + G           D + +++
Sbjct: 236 LAEQP------------YQ---------GLSNEQVLRFVMEG-GLLDKPDNCPDMLFELM 273

Query: 784 RIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKSNKESSNATKIKNPSEL 840
           R    C   +P  RP+  E++  + E     F    F        S   K+  P EL
Sbjct: 274 R---MCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF------YYSEENKLPEPEEL 321

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score =  118 bits (297), Expect = 3e-29
 Identities = 68/309 (22%), Positives = 115/309 (37%), Gaps = 76/309 (24%)

Query: 531 KNKVGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
              +G+G  G+V +      +   + VAVK +       ++S  +  +       E   +
Sbjct: 39  GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTM----KLDNSSQREIEEFLS----EAACM 90

Query: 587 GNIRHKNIVKLY--CYFSSLYCN---LLVYEYMPNGNLWDAL-----HKGLVHLDWPTRH 636
            +  H N+++L   C   S       +++  +M  G+L   L       G  H+   T  
Sbjct: 91  KDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLL 150

Query: 637 KIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
           K    +A G+ YL   +      +HRD+ + N +L  +    VADFG++K +      D 
Sbjct: 151 KFMVDIALGMEYLSNRN-----FLHRDLAARNCMLRDDMTVCVADFGLSKKIY---SGDY 202

Query: 695 TTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKN 748
                 G    +     A E       T+K DV++FGV + E+ T G  P          
Sbjct: 203 YR---QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTP---------- 249

Query: 749 IIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRP 798
             Y          G+   E+ D  L G  R        DE+ +++     C    P  RP
Sbjct: 250 --YP---------GVQNHEMYDYLLHG-HRLKQPEDCLDELYEIMY---SCWRTDPLDRP 294

Query: 799 TMNEVVQLL 807
           T + +   L
Sbjct: 295 TFSVLRLQL 303

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score =  117 bits (296), Expect = 3e-29
 Identities = 76/330 (23%), Positives = 129/330 (39%), Gaps = 90/330 (27%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGE---VVAVKKLWSQRTKVSASDTDQ 572
             + I    +  K ++G+G  G V+     +L+  +   +VAVK L     K   +   +
Sbjct: 8   HVQHIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKAL-----K-DPTLAAR 61

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL----------- 619
               +    E E L N++H++IVK Y  C         +V+EYM +G+L           
Sbjct: 62  KDFQR----EAELLTNLQHEHIVKFYGVCGDGDPLI--MVFEYMKHGDLNKFLRAHGPDA 115

Query: 620 ----WDALHKGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNY 673
                    +    L       IA  +A G+ YL   H      +HRD+ + N L+  N 
Sbjct: 116 MILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH-----FVHRDLATRNCLVGANL 170

Query: 674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVV 728
             K+ DFG+++ + +    D       G +  L      PE     K TT+ DV+SFGV+
Sbjct: 171 LVKIGDFGMSRDVYST---DYYR---VGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVI 224

Query: 729 LMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------D 777
           L E+ T G++P            ++          +   EV++    G            
Sbjct: 225 LWEIFTYGKQP------------WF---------QLSNTEVIECITQG-RVLERPRVCPK 262

Query: 778 EMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           E+  V+     C  + P  R  + E+ ++L
Sbjct: 263 EVYDVML---GCWQREPQQRLNIKEIYKIL 289

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (297), Expect = 4e-29
 Identities = 67/336 (19%), Positives = 133/336 (39%), Gaps = 50/336 (14%)

Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNH 152
            L  ++ +   +   +P    L  +   L+L  N+ +      +  NL  L  L +  N 
Sbjct: 32  HLRVVQCSDLGLE-KVPK--DLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK 87

Query: 153 LSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT---GEVPQD 208
           +S KI       L KL  L L  N L  E+   +  +  L  L +++N +T     V   
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNG 143

Query: 209 LGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRV 268
           L Q   ++V++L  N L                        SG+   +    K L   R+
Sbjct: 144 LNQ---MIVVELGTNPLK----------------------SSGIENGAFQGMKKLSYIRI 178

Query: 269 SNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSE 328
           ++ ++  +IP+G+   P ++ + L  N  +   A ++    NL++L +  N IS      
Sbjct: 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 329 IYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNS------SIPNSLSSLKS 382
           +     L ++ L++N L   +P G+ + K + ++ L +N +++        P   +   S
Sbjct: 236 LANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 383 LNVLDLSNNLLT-GYIPESLCELLPN--SINFSNNR 415
            + + L +N +    I  S    +    ++   N +
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (260), Expect = 3e-24
 Identities = 72/381 (18%), Positives = 128/381 (33%), Gaps = 111/381 (29%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
           +   LDL NN            +T ++   F                             
Sbjct: 53  DTALLDLQNN-----------KITEIKDGDF----------------------------- 72

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGL-LKNLRQLELYYNQQLAGTIPEE 136
                       N+ +L  L L  N I+  I P     L  L +L L  N QL   +PE+
Sbjct: 73  -----------KNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN-QLK-ELPEK 118

Query: 137 LGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSL-SGEISS-VIANSTTLTM 193
           +     L +L +  N ++ K+ +S+   L ++ V++L  N L S  I +        L+ 
Sbjct: 119 M--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 194 LSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVL 253
           + + D ++T  +PQ L     L  L L  NK+                        + V 
Sbjct: 176 IRIADTNIT-TIPQGL--PPSLTELHLDGNKI------------------------TKVD 208

Query: 254 PDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTVGNARNLS 312
             SL    NL +  +S N +  ++  G L+  PH+  + L+ N     +   + + + + 
Sbjct: 209 AASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQ 266

Query: 313 ELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSS 372
            +++  N IS  I S  +                   P         + + L SN +   
Sbjct: 267 VVYLHNNNIS-AIGSNDFCP-----------------PGYNTKKASYSGVSLFSNPVQYW 308

Query: 373 I--PNSLSSLKSLNVLDLSNN 391
              P++   +     + L N 
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.7 bits (249), Expect = 7e-23
 Identities = 64/292 (21%), Positives = 114/292 (39%), Gaps = 41/292 (14%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFR-LTK 69
           DF  ++NL  L L NN  + +     F  L  LE L  ++N   +L +LP   + + L +
Sbjct: 71  DFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN---QLKELP-EKMPKTLQE 125

Query: 70  LRIMVLATCALHGQIPASI-GNVTSLTDLELTGNFIT-GHIPPEI-GLLKNLRQLELYYN 126
           LR   +    +  ++  S+   +  +  +EL  N +    I       +K L  + +   
Sbjct: 126 LR---VHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 127 QQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVI 185
             +  TIP+ L     LT+L +  N ++ K+  + L  L  L  L L  NS+S   +  +
Sbjct: 182 -NIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
           AN+  L  L L +N L  +VP  L     + V+ L  N +S                 + 
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA----------------IG 279

Query: 246 QNMFSGVLPDSLARCKNLLRFRVSNNHLE-GSIPEGILS-LPHVSIIDLSYN 295
            N F    P    +  +     + +N ++   I       +   + + L   
Sbjct: 280 SNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 325 IPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLN 384
           +P ++        +DL +N ++        NLK L+ L+L +NK++   P + + L  L 
Sbjct: 46  VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103

Query: 385 VLDLSNNLLT---GYIPESLCELLPNSINFSNNRLS 417
            L LS N L      +P++L EL         N ++
Sbjct: 104 RLYLSKNQLKELPEKMPKTLQEL-----RVHENEIT 134

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score =  117 bits (294), Expect = 7e-29
 Identities = 65/310 (20%), Positives = 113/310 (36%), Gaps = 77/310 (24%)

Query: 531 KNKVGQGGSGTVYK---IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
              +G+G  G+V +      +   V VAVK L     K     +  ++       E   +
Sbjct: 28  GRMLGKGEFGSVREAQLKQEDGSFVKVAVKML-----KADIIASSDIE---EFLREAACM 79

Query: 587 GNIRHKNIVKLY--CY----FSSLYCNLLVYEYMPNGNLWDAL-----HKGLVHLDWPTR 635
               H ++ KL            L   +++  +M +G+L   L      +   +L   T 
Sbjct: 80  KEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTL 139

Query: 636 HKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD 693
            +    +A G+ YL   +      IHRD+ + N +L  +    VADFG+++ +       
Sbjct: 140 VRFMVDIACGMEYLSSRN-----FIHRDLAARNCMLAEDMTVCVADFGLSRKIY------ 188

Query: 694 STTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNK 747
           S      G    L     A E    +  T   DV++FGV + E++T G+ P         
Sbjct: 189 SGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTP--------- 239

Query: 748 NIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATR 797
              Y          GI   E+ +  + G  R        +E+  ++    +C S  P  R
Sbjct: 240 ---YA---------GIENAEIYNYLIGG-NRLKQPPECMEEVYDLMY---QCWSADPKQR 283

Query: 798 PTMNEVVQLL 807
           P+   +   L
Sbjct: 284 PSFTCLRMEL 293

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  119 bits (300), Expect = 2e-28
 Identities = 70/227 (30%), Positives = 98/227 (43%), Gaps = 28/227 (12%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
             K+G G  G V    D  +    A+K +  ++T VS S   +L        EV  L  +
Sbjct: 42  VKKLGSGAYGEVLLCRDKVTHVERAIKII--RKTSVSTSSNSKL------LEEVAVLKLL 93

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAY 648
            H NI+KLY +F       LV E    G L+D + H+     +      I   V  G+ Y
Sbjct: 94  DHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTY 151

Query: 649 LH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           LH H     I+HRD+K  N+LL   + +   K+ DFG++ V +             GT  
Sbjct: 152 LHKHN----IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE----NQKKMKERLGTAY 203

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
           Y+APE     K   KCDV+S GV+L  L+ G  P     G     I 
Sbjct: 204 YIAPE-VLRKKYDEKCDVWSIGVILFILLAGYPPF---GGQTDQEIL 246

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score =  116 bits (293), Expect = 2e-28
 Identities = 73/324 (22%), Positives = 115/324 (35%), Gaps = 83/324 (25%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGE---VVAVKKLWSQRTKVSASDTDQ 572
           D +E+  + +T    +G G  G VY+     + +      VAVK L         S+ D+
Sbjct: 64  DLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTL-----PEVCSEQDE 118

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
           L        E   +    H+NIV+       S      ++ E M  G+L   L +     
Sbjct: 119 LDFLM----EALIISKFNHQNIVRCIGVSLQSLPRF--ILLELMAGGDLKSFLRETRPRP 172

Query: 631 DWPTR------HKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDV---NYQPKVAD 679
             P+         +A  +A G  YL  +H      IHRDI + N LL         K+ D
Sbjct: 173 SQPSSLAMLDLLHVARDIACGCQYLEENH-----FIHRDIAARNCLLTCPGPGRVAKIGD 227

Query: 680 FGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT 734
           FG+A+ +     +        G    L      PE       T+K D +SFGV+L E+ +
Sbjct: 228 FGMARDIY----RAGYYRK--GGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 281

Query: 735 -GRKPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVL 783
            G  P            Y               EVL+   SG  R          + +++
Sbjct: 282 LGYMP------------YP---------SKSNQEVLEFVTSG-GRMDPPKNCPGPVYRIM 319

Query: 784 RIAIRCTSKSPATRPTMNEVVQLL 807
               +C    P  RP    +++ +
Sbjct: 320 T---QCWQHQPEDRPNFAIILERI 340

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score =  115 bits (290), Expect = 3e-28
 Identities = 54/338 (15%), Positives = 106/338 (31%), Gaps = 82/338 (24%)

Query: 529 TEKNKVGQGGSGTVYKI-DLNSGEVVAVKKL----------------------------- 558
                +G+GG G V++  +       A+K++                             
Sbjct: 9   EPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVR 68

Query: 559 -------------------WSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC 599
                                 + + +               ++  +     KN V    
Sbjct: 69  YFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQ 128

Query: 600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH--KIAFGVAQGLAYLH-HGLLSP 656
             S      +  +     NL D +++     D        I   +A+ + +LH  G    
Sbjct: 129 PSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKG---- 184

Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT---------TVIAGTYGYLA 707
           ++HRD+K +NI   ++   KV DFG+   +     + +           T   GT  Y++
Sbjct: 185 LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMS 244

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           PE  + +  + K D++S G++L EL+             +  I       D +     +L
Sbjct: 245 PEQIHGNNYSHKVDIFSLGLILFELLYSFST-----QMERVRII-----TDVRNLKFPLL 294

Query: 768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             +        M+Q         S SP  RP   ++++
Sbjct: 295 FTQKYPQEHM-MVQ------DMLSPSPTERPEATDIIE 325

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score =  114 bits (288), Expect = 3e-28
 Identities = 72/305 (23%), Positives = 113/305 (37%), Gaps = 68/305 (22%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVK-----KLWSQRTKVSASDTDQLQLDKG---------- 578
           G+G  G V    + N     A+K     KL  Q            +   G          
Sbjct: 22  GKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIE 81

Query: 579 -LKTEVETLGNIRHKNIVKLYCYF-----SSLYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
            +  E+  L  + H N+VKL           LY   +V+E +  G + +        L  
Sbjct: 82  QVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLY---MVFELVNQGPVMEVPTLK--PLSE 136

Query: 633 PTRHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
                    + +G+ YLH       IIHRDIK +N+L+  +   K+ADFG++   +    
Sbjct: 137 DQARFYFQDLIKGIEYLHYQK----IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDA 192

Query: 692 KDSTTTVIAGTYGYLAPE------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD 745
             S T    GT  ++APE        +S KA    DV++ GV L   + G+ P  D    
Sbjct: 193 LLSNT---VGTPAFMAPESLSETRKIFSGKA---LDVWAMGVTLYCFVFGQCPFMD---- 242

Query: 746 NKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR----DEMIQVLRIAI-RCTSKSPATRPTM 800
                          E IM +  K  S +       ++ + L+  I R   K+P +R  +
Sbjct: 243 ---------------ERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVV 287

Query: 801 NEVVQ 805
            E+  
Sbjct: 288 PEIKL 292

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score =  114 bits (288), Expect = 3e-28
 Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 32/235 (13%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K  +G+G S  V + I   + +  AVK +       S S  +  +L +    EV+ L  +
Sbjct: 22  KEILGRGVSSVVRRCIHKPTCKEYAVKII-DVTGGGSFSAEEVQELREATLKEVDILRKV 80

Query: 590 -RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQ 644
             H NI++L   +   +  +   LV++ M  G L+D L  K    L      KI   + +
Sbjct: 81  SGHPNIIQLKDTYETNTFFF---LVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLE 135

Query: 645 GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            +  LH       I+HRD+K  NILLD +   K+ DFG +  L            + GT 
Sbjct: 136 VICALHKLN----IVHRDLKPENILLDDDMNIKLTDFGFSCQLD----PGEKLREVCGTP 187

Query: 704 GYLAPE------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
            YLAPE               + D++S GV++  L+ G  P    F    + ++ 
Sbjct: 188 SYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP----FWHRKQMLML 238

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score =  117 bits (296), Expect = 6e-28
 Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 20/217 (9%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVK---KLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
             K+G G  G V    + N     A+K   K    + + S  + +  +  + +  E+  L
Sbjct: 41  VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLL 100

Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQG 645
            ++ H NI+KL+  F       LV E+   G L++ + ++     D      I   +  G
Sbjct: 101 KSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSG 158

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + YLH H     I+HRDIK  NILL   +     K+ DFG++        KD       G
Sbjct: 159 ICYLHKHN----IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFS----KDYKLRDRLG 210

Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           T  Y+APE     K   KCDV+S GV++  L+ G  P
Sbjct: 211 TAYYIAPE-VLKKKYNEKCDVWSCGVIMYILLCGYPP 246

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score =  114 bits (287), Expect = 7e-28
 Identities = 72/366 (19%), Positives = 132/366 (36%), Gaps = 93/366 (25%)

Query: 486 KRRFSKQ-RAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK 544
           K ++  + + I   +    +   P  +    +  F +  +         +G G  G V +
Sbjct: 9   KPKYQVRWKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNL----QFGKTLGAGAFGKVVE 64

Query: 545 ---IDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKL 597
                L   +    VAVK L     K +A   ++  L      E++ + ++ +H+NIV L
Sbjct: 65  ATAFGLGKEDAVLKVAVKML-----KSTAHADEKEALMS----ELKIMSHLGQHENIVNL 115

Query: 598 Y--CYFSSLYCNLLVYEYMPNGNLWDAL-------------HKGLVHLDWPTRHKIAFGV 642
              C         ++ EY   G+L + L                            +  V
Sbjct: 116 LGACTHGGPVL--VITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQV 173

Query: 643 AQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
           AQG+A+L   +      IHRD+ + N+LL   +  K+ DFG+A+ +       + +  I 
Sbjct: 174 AQGMAFLASKN-----CIHRDVAARNVLLTNGHVAKIGDFGLARDIM------NDSNYIV 222

Query: 701 GTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVS 754
                L     APE  +    T + DV+S+G++L E+ + G  P            Y   
Sbjct: 223 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNP------------YP-- 268

Query: 755 IKVDTKEGIM---EVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNEV 803
                  GI+   +       G ++          +  +++    C +  P  RPT  ++
Sbjct: 269 -------GILVNSKFYKLVKDG-YQMAQPAFAPKNIYSIMQ---ACWALEPTHRPTFQQI 317

Query: 804 VQLLAE 809
              L E
Sbjct: 318 CSFLQE 323

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score =  114 bits (287), Expect = 8e-28
 Identities = 75/331 (22%), Positives = 124/331 (37%), Gaps = 89/331 (26%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK---IDLNSGE---VVAVKKLWSQRTKVSASDTDQ 572
               I    +  K ++G+G  G V+     +L   +   +VAVK L     K  AS++ +
Sbjct: 34  CVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL-----K-EASESAR 87

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL----------- 619
               +    E E L  ++H++IV+ +  C         +V+EYM +G+L           
Sbjct: 88  QDFQR----EAELLTMLQHQHIVRFFGVCTEGRPLL--MVFEYMRHGDLNRFLRSHGPDA 141

Query: 620 ---WDALHKGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQ 674
                        L       +A  VA G+ YL   H      +HRD+ + N L+     
Sbjct: 142 KLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH-----FVHRDLATRNCLVGQGLV 196

Query: 675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVL 729
            K+ DFG+++ +           V  G    L      PE     K TT+ DV+SFGVVL
Sbjct: 197 VKIGDFGMSRDIY----STDYYRV--GGRTMLPIRWMPPESILYRKFTTESDVWSFGVVL 250

Query: 730 MELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DE 778
            E+ T G++P            ++          +   E +D    G            E
Sbjct: 251 WEIFTYGKQP------------WY---------QLSNTEAIDCITQG-RELERPRACPPE 288

Query: 779 MIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           +  ++R    C  + P  R ++ +V   L  
Sbjct: 289 VYAIMR---GCWQREPQQRHSIKDVHARLQA 316

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score =  114 bits (288), Expect = 9e-28
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 28/253 (11%)

Query: 490 SKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLN 548
           +K+    +P  T +  F     +         +E  +    K+ +G+G S  V + +   
Sbjct: 58  AKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRA 117

Query: 549 SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYF---SSL 604
           +G   AVK +  + T    S     ++ +  + E   L  +  H +I+ L   +   S +
Sbjct: 118 TGHEFAVKIM--EVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFM 175

Query: 605 YCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLH-HGLLSPIIHRDI 662
           +   LV++ M  G L+D L  K    L       I   + + +++LH +     I+HRD+
Sbjct: 176 F---LVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFLHANN----IVHRDL 226

Query: 663 KSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE------YAYSSKA 716
           K  NILLD N Q +++DFG +  L+           + GT GYLAPE             
Sbjct: 227 KPENILLDDNMQIRLSDFGFSCHLE----PGEKLRELCGTPGYLAPEILKCSMDETHPGY 282

Query: 717 TTKCDVYSFGVVL 729
             + D+++ GV+L
Sbjct: 283 GKEVDLWACGVIL 295

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score =  114 bits (288), Expect = 1e-27
 Identities = 79/321 (24%), Positives = 122/321 (38%), Gaps = 91/321 (28%)

Query: 531 KNKVGQGGSGTVYK-----IDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
              +G+G  G V       ID +  +    VAVK L     K  A++ D   L      E
Sbjct: 86  GKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKML-----KDDATEKDLSDLVS----E 136

Query: 583 VETLGNI-RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL---------------WDALH 624
           +E +  I +HKNI+ L   C         ++ EY   GNL               +D   
Sbjct: 137 MEMMKMIGKHKNIINLLGACTQDGPLY--VIVEYASKGNLREYLRARRPPGMEYSYDINR 194

Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                + +       + +A+G+ YL          IHRD+ + N+L+  N   K+ADFG+
Sbjct: 195 VPEEQMTFKDLVSCTYQLARGMEYLASQK-----CIHRDLAARNVLVTENNVMKIADFGL 249

Query: 683 AKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
           A+ +       +       T G L     APE  +    T + DV+SFGV++ E+ T G 
Sbjct: 250 ARDIN------NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGG 303

Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIA 786
            P            Y          GI   E+      G  R        +E+  ++R  
Sbjct: 304 SP------------YP---------GIPVEELFKLLKEG-HRMDKPANCTNELYMMMR-- 339

Query: 787 IRCTSKSPATRPTMNEVVQLL 807
             C    P+ RPT  ++V+ L
Sbjct: 340 -DCWHAVPSQRPTFKQLVEDL 359

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score =  113 bits (284), Expect = 1e-27
 Identities = 73/326 (22%), Positives = 124/326 (38%), Gaps = 96/326 (29%)

Query: 531 KNKVGQGGSGTVYK-----IDLNSGEV-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
              +G+G  G V K     +   +G   VAVK L     K +AS ++   L      E  
Sbjct: 28  GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKML-----KENASPSELRDLLS----EFN 78

Query: 585 TLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNLWDAL------------------- 623
            L  + H +++KLY  C         L+ EY   G+L   L                   
Sbjct: 79  VLKQVNHPHVIKLYGACSQDGPLL--LIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNS 136

Query: 624 ----HKGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKV 677
               H     L        A+ ++QG+ YL         ++HRD+ + NIL+    + K+
Sbjct: 137 SSLDHPDERALTMGDLISFAWQISQGMQYLAEMK-----LVHRDLAARNILVAEGRKMKI 191

Query: 678 ADFGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMEL 732
           +DFG+++ +          + +  + G +     A E  +    TT+ DV+SFGV+L E+
Sbjct: 192 SDFGLSRDVY------EEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEI 245

Query: 733 IT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQ 781
           +T G  P            Y          GI    + +   +G  R        +EM +
Sbjct: 246 VTLGGNP------------YP---------GIPPERLFNLLKTG-HRMERPDNCSEEMYR 283

Query: 782 VLRIAIRCTSKSPATRPTMNEVVQLL 807
           ++    +C  + P  RP   ++ + L
Sbjct: 284 LML---QCWKQEPDKRPVFADISKDL 306

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score =  112 bits (282), Expect = 1e-27
 Identities = 54/307 (17%), Positives = 99/307 (32%), Gaps = 75/307 (24%)

Query: 531 KNKVGQGGSGTVYK-------IDLNSGEV-VAVKKLWSQRTKVSASDTDQ--LQLDKGLK 580
              +GQG    ++K             E  V +K L       +  +  +   +      
Sbjct: 13  NESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVL-----DKAHRNYSESFFE------ 61

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
                +  + HK++V  Y        N+LV E++  G+L   L K    ++   + ++A 
Sbjct: 62  -AASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAK 120

Query: 641 GVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQP--------KVADFGIAKVLQARG 690
            +A  + +L  +      +IH ++ + NILL              K++D GI+  +    
Sbjct: 121 QLAAAMHFLEENT-----LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVL--- 172

Query: 691 GKDSTTTVIAGTYGYLAPE-YAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKN 748
            KD     I        PE            D +SFG  L E+ + G KP         +
Sbjct: 173 PKDILQERIPWV----PPECIENPKNLNLATDKWSFGTTLWEICSGGDKP----LSALDS 224

Query: 749 IIYWVSIKVDTKEGIMEVLDKKLSGSFR------DEMIQVLRIAIRCTSKSPATRPTMNE 802
                             L        +       E+  ++     C    P  RP+   
Sbjct: 225 ---------------QRKLQFYEDR-HQLPAPKAAELANLIN---NCMDYEPDHRPSFRA 265

Query: 803 VVQLLAE 809
           +++ L  
Sbjct: 266 IIRDLNS 272

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score =  112 bits (283), Expect = 2e-27
 Identities = 75/318 (23%), Positives = 116/318 (36%), Gaps = 81/318 (25%)

Query: 531 KNKVGQGGSGTVYK---IDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
              +G+G  G V +     ++       VAVK L     K  A+ ++   L      E++
Sbjct: 32  GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKML-----KEGATHSEHRALMS----ELK 82

Query: 585 TLGNI-RHKNIVKLY-CYFSSLYCNLLVYEYMPNGNLWDAL---------------HKGL 627
            L +I  H N+V L           +++ E+   GNL   L                   
Sbjct: 83  ILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYK 142

Query: 628 VHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV 685
             L        +F VA+G+ +L          IHRD+ + NILL      K+ DFG+A+ 
Sbjct: 143 DFLTLEHLICYSFQVAKGMEFLASRK-----CIHRDLAARNILLSEKNVVKICDFGLARD 197

Query: 686 LQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPV 739
           +            +      L     APE  +    T + DV+SFGV+L E+ + G  P 
Sbjct: 198 IY------KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP- 250

Query: 740 EDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR--------DEMIQVLRIAIRCTS 791
                      Y   +K+D      E   +   G  R         EM Q +     C  
Sbjct: 251 -----------YP-GVKIDE-----EFCRRLKEG-TRMRAPDYTTPEMYQTML---DCWH 289

Query: 792 KSPATRPTMNEVVQLLAE 809
             P+ RPT +E+V+ L  
Sbjct: 290 GEPSQRPTFSELVEHLGN 307

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  115 bits (290), Expect = 2e-27
 Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 24/218 (11%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +  +G+G  G V    D  +G+  AVK +   + +V      +      L  EV+ L  +
Sbjct: 31  QRVLGKGSFGEVILCKDKITGQECAVKVI--SKRQVKQKTDKES-----LLREVQLLKQL 83

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAY 648
            H NI+KLY +F       LV E    G L+D +  +           +I   V  G+ Y
Sbjct: 84  DHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK--RFSEVDAARIIRQVLSGITY 141

Query: 649 LH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           +H +     I+HRD+K  N+LL     +   ++ DFG++   +             GT  
Sbjct: 142 MHKNK----IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE----ASKKMKDKIGTAY 193

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           Y+APE         KCDV+S GV+L  L++G  P    
Sbjct: 194 YIAPE-VLHGTYDEKCDVWSTGVILYILLSGCPPFNGA 230

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score =  111 bits (280), Expect = 3e-27
 Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 42/234 (17%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
              +G+G  G V K  D  + +  AVK +   +      DT  +        EVE L  +
Sbjct: 27  VCMLGKGSFGEVLKCKDRITQQEYAVKVI--NKASAKNKDTSTI------LREVELLKKL 78

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFGVAQG 645
            H NI+KL+      SS Y   +V E    G L+D  + +           +I   V  G
Sbjct: 79  DHPNIMKLFEILEDSSSFY---IVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSG 133

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           + Y+H H     I+HRD+K  NILL   + +   K+ DFG++        +++      G
Sbjct: 134 ITYMHKHN----IVHRDLKPENILLESKEKDCDIKIIDFGLSTCF----QQNTKMKDRIG 185

Query: 702 TYGYLAPE---YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
           T  Y+APE     Y      KCDV+S GV+L  L++G  P    F G N+  I 
Sbjct: 186 TAYYIAPEVLRGTYD----EKCDVWSAGVILYILLSGTPP----FYGKNEYDIL 231

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score =  112 bits (283), Expect = 3e-27
 Identities = 79/323 (24%), Positives = 122/323 (37%), Gaps = 91/323 (28%)

Query: 531 KNKVGQGGSGTVYK-----IDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
              +G+G  G V       ID +  +    VAVK L     K  A++ D   L      E
Sbjct: 40  GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKML-----KDDATEKDLSDLVS----E 90

Query: 583 VETLGNI-RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL---------------WDALH 624
           +E +  I +HKNI+ L   C         ++ EY   GNL               +D   
Sbjct: 91  MEMMKMIGKHKNIINLLGACTQDGPLY--VIVEYASKGNLREYLRARRPPGMEYSYDINR 148

Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                + +       + +A+G+ YL          IHRD+ + N+L+  N   K+ADFG+
Sbjct: 149 VPEEQMTFKDLVSCTYQLARGMEYLASQK-----CIHRDLAARNVLVTENNVMKIADFGL 203

Query: 683 AKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
           A+ +       +       T G L     APE  +    T + DV+SFGV++ E+ T G 
Sbjct: 204 ARDIN------NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGG 257

Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIA 786
            P            Y          GI   E+      G  R        +E+  ++R  
Sbjct: 258 SP------------YP---------GIPVEELFKLLKEG-HRMDKPANCTNELYMMMR-- 293

Query: 787 IRCTSKSPATRPTMNEVVQLLAE 809
             C    P+ RPT  ++V+ L  
Sbjct: 294 -DCWHAVPSQRPTFKQLVEDLDR 315

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  113 bits (283), Expect = 3e-27
 Identities = 66/277 (23%), Positives = 103/277 (37%), Gaps = 60/277 (21%)

Query: 522 REILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
            E+ +    K  +GQG  G V   I+  +  + A+K +   + K+   +   ++    +K
Sbjct: 22  LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIM--NKNKIRQINPKDVE---RIK 76

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
           TEV  +  + H NI +LY  +       LV E    G+L D L+  +          +  
Sbjct: 77  TEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVK 136

Query: 641 G---------------------------------------VAQGLAYLH-HGLLSPIIHR 660
                                                   +   L YLH  G    I HR
Sbjct: 137 TQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQG----ICHR 192

Query: 661 DIKSTNILL--DVNYQPKVADFGIAKVLQ-ARGGKDSTTTVIAGTYGYLAPE--YAYSSK 715
           DIK  N L   + +++ K+ DFG++K       G+    T  AGT  ++APE     +  
Sbjct: 193 DIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNES 252

Query: 716 ATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
              KCD +S GV+L  L+ G  P    F G N     
Sbjct: 253 YGPKCDAWSAGVLLHLLLMGAVP----FPGVNDADTI 285

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  115 bits (290), Expect = 3e-27
 Identities = 67/234 (28%), Positives = 100/234 (42%), Gaps = 42/234 (17%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
              +G+G  G V K  D  + +  AVK +   +      DT  +        EVE L  +
Sbjct: 27  VCMLGKGSFGEVLKCKDRITQQEYAVKVI--NKASAKNKDTSTI------LREVELLKKL 78

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH-------KIAFGV 642
            H NI+KL+          +V E    G L+D + K         +        +I   V
Sbjct: 79  DHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIK--------RKRFSEHDAARIIKQV 130

Query: 643 AQGLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTV 698
             G+ Y+H H     I+HRD+K  NILL   + +   K+ DFG++   Q    +++    
Sbjct: 131 FSGITYMHKHN----IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ----QNTKMKD 182

Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
             GT  Y+APE         KCDV+S GV+L  L++G  P    F G N+  I 
Sbjct: 183 RIGTAYYIAPE-VLRGTYDEKCDVWSAGVILYILLSGTPP----FYGKNEYDIL 231

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  110 bits (277), Expect = 6e-27
 Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 43/236 (18%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K K+G G  G V+   + +SG    +K +   R++V             ++ E+E L ++
Sbjct: 27  KRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQ---------IEAEIEVLKSL 77

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ-- 644
            H NI+K++  F    ++Y   +V E    G L + +          +   +A  + Q  
Sbjct: 78  DHPNIIKIFEVFEDYHNMY---IVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMM 134

Query: 645 -GLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
             LAY H       ++H+D+K  NIL      +   K+ DFG+A++ +     D  +T  
Sbjct: 135 NALAYFHSQH----VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK----SDEHSTNA 186

Query: 700 AGTYGYLAPE---YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
           AGT  Y+APE      +     KCD++S GVV+  L+TG  P    F G +   + 
Sbjct: 187 AGTALYMAPEVFKRDVT----FKCDIWSAGVVMYFLLTGCLP----FTGTSLEEVQ 234

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score =  112 bits (281), Expect = 8e-27
 Identities = 37/274 (13%), Positives = 77/274 (28%), Gaps = 36/274 (13%)

Query: 498 PDETLSSSFFPYDVK-SFHRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSG 550
              +   + F +  K    +   + +   + +   + +G+G    VY+       D  + 
Sbjct: 36  KPVSSYPNTFEWQCKLPAIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNK 95

Query: 551 EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLV 610
           +   +K                          +E L        +K Y        ++LV
Sbjct: 96  QKFVLKVQ----------KPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLV 145

Query: 611 YEYMPNGNLWDALHKGLVH----LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTN 666
            E    G L +A++         +        A  +   +  +H      IIH DIK  N
Sbjct: 146 GELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE---IIHGDIKPDN 202

Query: 667 ILLDVNYQP-----------KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK 715
            +L   +              + D G +  ++        T     T G+   E   +  
Sbjct: 203 FILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKC-ETSGFQCVEMLSNKP 261

Query: 716 ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI 749
              + D +     +  ++ G      + G     
Sbjct: 262 WNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKP 295

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  114 bits (286), Expect = 1e-26
 Identities = 60/302 (19%), Positives = 104/302 (34%), Gaps = 57/302 (18%)

Query: 121 LELYYNQ--QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS 178
              +YN                 +      + N     + E ++   +   LQL   +LS
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLS 72

Query: 179 GEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGK 238
             +   +     +T+L +  N+L   +P+       L  LD  +N+LS            
Sbjct: 73  -SLPDNLPPQ--ITVLEITQNALI-SLPELPAS---LEYLDACDNRLS------------ 113

Query: 239 LQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFS 298
                         LP+  A  K+L    V NN L   +PE    L     I+   N  +
Sbjct: 114 -------------TLPELPASLKHL---DVDNNQLT-MLPELPALL---EYINADNNQLT 153

Query: 299 GPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKK 358
             +     +   L  L ++ NQ++ F+P       SL  +D+S NLL   +P+       
Sbjct: 154 M-LPELPTS---LEVLSVRNNQLT-FLPELP---ESLEALDVSTNLLES-LPAVPVRNHH 204

Query: 359 L----NLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNN 414
                     + N++ + IP ++ SL     + L +N L+  I ESL +           
Sbjct: 205 SEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 415 RL 416
             
Sbjct: 264 IY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  113 bits (284), Expect = 3e-26
 Identities = 64/324 (19%), Positives = 118/324 (36%), Gaps = 60/324 (18%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQ--QLAGTIPEELGNL 140
           I   I N  SL+      N I+G    +         +  L      +    + E L  +
Sbjct: 3   IMLPINNNFSLSQNSFY-NTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 141 TELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNS 200
            + ++L ++  +LS  +P+++   P++ VL++  N+L   +  + A+   L  L   DN 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 201 LTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARC 260
           L+  +P+       L  LD+  N+L+  LP        L+Y     N  + +LP+     
Sbjct: 112 LS-TLPELPAS---LKHLDVDNNQLTM-LPELP---ALLEYINADNNQLT-MLPELP--- 159

Query: 261 KNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQ 320
            +L    V NN L   +PE                              +L  L +  N 
Sbjct: 160 TSLEVLSVRNNQLT-FLPELP---------------------------ESLEALDVSTNL 191

Query: 321 ISGFIPSEIYRAISL----VKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNS 376
           +   +P+   R        +     +N ++  IP  I +L     ++L+ N L+S I  S
Sbjct: 192 LES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRES 249

Query: 377 LSSLKSLNVLDLSNNLLTGYIPES 400
           LS   +           +    + 
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  108 bits (272), Expect = 7e-25
 Identities = 51/321 (15%), Positives = 101/321 (31%), Gaps = 34/321 (10%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
           +L     +     L L+    +   P ++     + VL   +N    L  LPE       
Sbjct: 51  SLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQN---ALISLPEL----PA 100

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
            L  +      L   +P    +   L  L++  N +T  +P        L  +    NQ 
Sbjct: 101 SLEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPA---LLEYINADNNQ- 151

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG---EISSVI 185
               +PE   +L     L +  N L+  +PE       L  L +  N L           
Sbjct: 152 -LTMLPELPTSLEV---LSVRNNQLT-FLPEL---PESLEALDVSTNLLESLPAVPVRNH 203

Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
            +  T       +N +T  +P+++    P   + L +N LS     +  S+   Q     
Sbjct: 204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHG 261

Query: 246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTV 305
             ++  +         +             +    +  + H    +   N+FS    + +
Sbjct: 262 PRIYFSMSDGQQNTL-HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA-FLDRL 319

Query: 306 GNARNLSELFMQRNQISGFIP 326
            +  +       R Q++ ++ 
Sbjct: 320 SDTVSARNTSGFREQVAAWLE 340

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  107 bits (268), Expect = 2e-24
 Identities = 60/309 (19%), Positives = 111/309 (35%), Gaps = 34/309 (11%)

Query: 15  PMQNLRRL--DLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
           P+ N   L  +   N  +G +          E  +       +   L +  +  + +   
Sbjct: 6   PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSE 63

Query: 73  MVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGT 132
           + L    L   +P ++     +T LE+T N +   +P       +L  L+   N+ L+ T
Sbjct: 64  LQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPA---SLEYLDACDNR-LS-T 114

Query: 133 IPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLT 192
           +PE   +L  L   D+  N L+  +PE       L  +   NN L+  +  +  +   L 
Sbjct: 115 LPELPASLKHL---DVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPTS---LE 163

Query: 193 MLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL----QNM 248
           +LS+ +N LT  +P+       L  LD+S N L   LPA        +   +     +N 
Sbjct: 164 VLSVRNNQLT-FLPELPES---LEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENR 218

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNA 308
            +  +P+++          + +N L   I E +               FS          
Sbjct: 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

Query: 309 RNLSELFMQ 317
           R L++    
Sbjct: 278 RPLADAVTA 286

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score =  110 bits (276), Expect = 1e-26
 Identities = 82/353 (23%), Positives = 135/353 (38%), Gaps = 100/353 (28%)

Query: 500 ETLSSSFFPYDVK---SFHRISFDQREILEAMTEKNKVGQGGSGTVYK-----IDLNSGE 551
             +  +  PYD K     +R+SF +            +G G  G V +     +  +   
Sbjct: 5   VYIDPTQLPYDHKWEFPRNRLSFGK-----------TLGAGAFGKVVEATAYGLIKSDAA 53

Query: 552 V-VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY--CYFSSLYCN 607
           + VAVK L     K SA  T++  L      E++ L  +  H NIV L   C        
Sbjct: 54  MTVAVKML-----KPSAHLTEREALMS----ELKVLSYLGNHMNIVNLLGACTIGGPTL- 103

Query: 608 LLVYEYMPNGNL-----------------WDALHKGLVHLDWPTRHKIAFGVAQGLAYL- 649
            ++ EY   G+L                    +    + LD       ++ VA+G+A+L 
Sbjct: 104 -VITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA 162

Query: 650 -HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL-- 706
             +      IHRD+ + NILL      K+ DFG+A+ ++      + +  +      L  
Sbjct: 163 SKN-----CIHRDLAARNILLTHGRITKICDFGLARDIK------NDSNYVVKGNARLPV 211

Query: 707 ---APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
              APE  ++   T + DV+S+G+ L EL + G  P             +  + VD+   
Sbjct: 212 KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP-------------YPGMPVDS--- 255

Query: 763 IMEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
             +       G FR         EM  +++    C    P  RPT  ++VQL+
Sbjct: 256 --KFYKMIKEG-FRMLSPEHAPAEMYDIMK---TCWDADPLKRPTFKQIVQLI 302

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score =  110 bits (278), Expect = 2e-26
 Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 48/238 (20%)

Query: 521 QREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
            R+ ++    +   GQG  GTV    + ++G  VA+KK+              +Q D   
Sbjct: 18  SRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKV--------------IQ-DPRF 62

Query: 580 KT----EVETLGNIRHKNIVKLYCYFSS--------LYCNLLVYEYMPNGNLWDALHKGL 627
           +      ++ L  + H NIV+L  YF +        +Y N+ V EY+P     D LH+  
Sbjct: 63  RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNV-VMEYVP-----DTLHRCC 116

Query: 628 VHLDW-----PTRHK--IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVAD 679
            +        P        F + + +  LH   ++ + HRDIK  N+L++  +   K+ D
Sbjct: 117 RNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN-VCHRDIKPHNVLVNEADGTLKLCD 175

Query: 680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
           FG AK L      +     I   Y Y APE  + ++  TT  D++S G +  E++ G 
Sbjct: 176 FGSAKKL---SPSEPNVAYICSRY-YRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGE 229

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score =  108 bits (273), Expect = 2e-26
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 35/232 (15%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K ++G+G    V + +   +G   A K +     K+SA D  +L      + E      +
Sbjct: 11  KEELGKGAFSVVRRCVHKTTGLEFAAKII--NTKKLSARDFQKL------EREARICRKL 62

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQG 645
           +H NIV+L+      S  Y   LV++ +  G L++ +  +                + + 
Sbjct: 63  QHPNIVRLHDSIQEESFHY---LVFDLVTGGELFEDIVARE--FYSEADASHCIQQILES 117

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +AY H +G    I+HR++K  N+LL         K+ADFG+A  +             AG
Sbjct: 118 IAYCHSNG----IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN----DSEAWHGFAG 169

Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIYW 752
           T GYL+PE       +   D+++ GV+L  L+ G  P    F  ++++ +Y 
Sbjct: 170 TPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPP----FWDEDQHRLYA 217

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score =  110 bits (276), Expect = 2e-26
 Identities = 80/326 (24%), Positives = 123/326 (37%), Gaps = 96/326 (29%)

Query: 531 KNKVGQGGSGTVYK---IDLNSGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
              +G+G  G V++     L   E   +VAVK L     K  AS   Q    +    E  
Sbjct: 52  VRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKML-----KEEASADMQADFQR----EAA 102

Query: 585 TLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL----------------------- 619
            +    + NIVKL   C      C  L++EYM  G+L                       
Sbjct: 103 LMAEFDNPNIVKLLGVCAVGKPMC--LLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTR 160

Query: 620 WDALHKGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKV 677
                 G   L    +  IA  VA G+AYL          +HRD+ + N L+  N   K+
Sbjct: 161 ARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK-----FVHRDLATRNCLVGENMVVKI 215

Query: 678 ADFGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMEL 732
           ADFG+++ +       S     A     +      PE  + ++ TT+ DV+++GVVL E+
Sbjct: 216 ADFGLSRNIY------SADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEI 269

Query: 733 IT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQ 781
            + G +P            Y+         G+   EV+     G            E+  
Sbjct: 270 FSYGLQP------------YY---------GMAHEEVIYYVRDG-NILACPENCPLELYN 307

Query: 782 VLRIAIRCTSKSPATRPTMNEVVQLL 807
           ++R    C SK PA RP+   + ++L
Sbjct: 308 LMR---LCWSKLPADRPSFCSIHRIL 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  109 bits (275), Expect = 3e-26
 Identities = 66/315 (20%), Positives = 112/315 (35%), Gaps = 46/315 (14%)

Query: 132 TIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTL 191
            +P+E+    + T LD+  N +S    +    L  L  L L NN +S       +    L
Sbjct: 47  AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 192 TMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSG 251
             L +  N L  E+P +L   S LV L + +N++                          
Sbjct: 105 QKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRK------------------------ 137

Query: 252 VLPDSLARCKNLLRFRVSNNHL-EGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARN 310
           V     +  +N+    +  N L       G      ++ + +S    +G   +       
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ET 194

Query: 311 LSELFMQRNQISGFIPSEIYRAI-SLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNK 368
           L+EL +  N+I   I  E       L ++ L  N +   I +G    L  L  L L +NK
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNK 252

Query: 369 LNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSN---NRLSG-PIPLSL 424
           L S +P  L  LK L V+ L  N +T  +  +    +   +  +      L   P+P   
Sbjct: 253 L-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 425 IKEGLVESFSGNPGL 439
           ++     +F      
Sbjct: 311 VQPA---TFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (270), Expect = 1e-25
 Identities = 55/311 (17%), Positives = 110/311 (35%), Gaps = 26/311 (8%)

Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNH 152
            L  ++ +   +   +P EI    +   L+L  N  ++    ++   L  L  L +  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK 89

Query: 153 LSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ 211
           +S KI E     L KL+ L +  N L  EI   + +S  L  L ++DN +          
Sbjct: 90  IS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSG 145

Query: 212 WSPLVVLDLSENKL-SGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN 270
              +  +++  N L +           KL Y  + +   +G+  D       L    + +
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE---TLNELHLDH 202

Query: 271 NHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI 329
           N ++ +I    L     +  + L +N        ++     L EL +  N++S  +P+ +
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 330 YRAISLVKIDLSDNLLSGPIPSGI-------GNLKKLNLLMLQSNKLNSSI--PNSLSSL 380
                L  + L  N ++  +                 N + L +N +      P +   +
Sbjct: 261 PDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 381 KSLNVLDLSNN 391
                +   N 
Sbjct: 320 TDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 59/293 (20%), Positives = 102/293 (34%), Gaps = 44/293 (15%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
           DF  +Q+L  L L NN  +     +   L  L+ L  ++N    L ++P +    L +LR
Sbjct: 73  DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN---HLVEIPPNLPSSLVELR 129

Query: 72  IMVLATCALHG----QIPASI-GNVTSLTDLELTGNFIT-GHIPPEIGLLKNLRQLELYY 125
                   +H     ++P  +   + ++  +E+ GN +      P       L  L +  
Sbjct: 130 --------IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 126 NQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSV 184
            +     IP++L     L +L +  N +   I    L R  KL  L L +N +    +  
Sbjct: 182 AKL--TGIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           ++   TL  L L +N L+  VP  L     L V+ L  N ++                 V
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK----------------V 279

Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLE-GSIPEGILS-LPHVSIIDLSYN 295
             N F  V      +        + NN +    +       +     I     
Sbjct: 280 GVNDFCPVGF--GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 61/315 (19%), Positives = 107/315 (33%), Gaps = 50/315 (15%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
           +   LDL NN  + +     F  L +L  L    N   K+ K+ E +   L KL+ + ++
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN---KISKIHEKAFSPLRKLQKLYIS 110

Query: 77  TCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPE 135
              L  +IP ++   +SL +L +  N I   +P  +   L+N+  +E+  N         
Sbjct: 111 KNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 136 ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS-VIANSTTLTML 194
              +  +L  L +S   L+  IP+ +     L  L L +N +   I    +   + L  L
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRL 222

Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP 254
            L  N +       L     L  L L  NKLS                          +P
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-------------------------RVP 257

Query: 255 DSLARCKNLLRFRVSNNHLEGSIPEGI-------LSLPHVSIIDLSYN--SFSGPIANTV 305
             L   K L    +  N++   +           +   + + I L  N   +      T 
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 306 GNARNLSELFMQRNQ 320
               +   +     +
Sbjct: 317 RCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 47/224 (20%)

Query: 13  FSPMQNLRRLDLSNN-LFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
           FS ++N+  +++  N L    F    F+   L  L  +E               +LT   
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA--------------KLTG-- 186

Query: 72  IMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLA 130
                       IP       +L +L L  N I   I  E       L +L L +NQ   
Sbjct: 187 ------------IPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ--I 229

Query: 131 GTIPEE-LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS------ 183
             I    L  L  L +L +  N LS ++P  +  L  L+V+ L+ N+++ ++        
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPV 287

Query: 184 -VIANSTTLTMLSLYDNSLT-GEVPQDLGQWSP-LVVLDLSENK 224
                      +SL++N +   EV     +     + +     K
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score =  110 bits (277), Expect = 4e-26
 Identities = 81/321 (25%), Positives = 122/321 (38%), Gaps = 91/321 (28%)

Query: 531 KNKVGQGGSGTVYK---IDLNSGE-----VVAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
              +G+G  G V     I L+  +      VAVK L     K  A++ D   L      E
Sbjct: 74  GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKML-----KSDATEKDLSDLIS----E 124

Query: 583 VETLGNI-RHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL---------------WDALH 624
           +E +  I +HKNI+ L   C         ++ EY   GNL               ++  H
Sbjct: 125 MEMMKMIGKHKNIINLLGACTQDGPLY--VIVEYASKGNLREYLQARRPPGLEYSYNPSH 182

Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
                L        A+ VA+G+ YL          IHRD+ + N+L+  +   K+ADFG+
Sbjct: 183 NPEEQLSSKDLVSCAYQVARGMEYLASKK-----CIHRDLAARNVLVTEDNVMKIADFGL 237

Query: 683 AKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GR 736
           A+ +               T G L     APE  +    T + DV+SFGV+L E+ T G 
Sbjct: 238 ARDIH------HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGG 291

Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGI--MEVLDKKLSGSFR--------DEMIQVLRIA 786
            P            Y          G+   E+      G  R        +E+  ++R  
Sbjct: 292 SP------------YP---------GVPVEELFKLLKEG-HRMDKPSNCTNELYMMMR-- 327

Query: 787 IRCTSKSPATRPTMNEVVQLL 807
             C    P+ RPT  ++V+ L
Sbjct: 328 -DCWHAVPSQRPTFKQLVEDL 347

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (271), Expect = 6e-26
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 14/222 (6%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQF--PLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
            F  +  L +L LS+N  + +     S F  T+L+ L  + N    +  +  S+   L +
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMS-SNFLGLEQ 102

Query: 70  LRIMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQ 127
           L  +      L      S+  ++ +L  L+++           I   L +L  L++  N 
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNS 161

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIA 186
                +P+    L  LT LD+S   L  ++  +    L  L+VL + +N+     +    
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 187 NSTTLTMLSLYDNSLTGEVPQDL--GQWSPLVVLDLSENKLS 226
              +L +L    N +     +       S L  L+L++N  +
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (255), Expect = 8e-24
 Identities = 59/294 (20%), Positives = 104/294 (35%), Gaps = 61/294 (20%)

Query: 132 TIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLS--GEISSVIANS 188
           ++P  +   +  T L++  N L   +P  +  +L +L  L L +N LS  G  S     +
Sbjct: 21  SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
           T+L  L L  N +   +  +      L  LD   + L                 +   ++
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ---------------MSEFSV 121

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPI-ANTVG 306
           F           +NL+   +S+ H       GI + L  + ++ ++ NSF      +   
Sbjct: 122 FLS--------LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 307 NARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS 366
             RNL+ L + + Q+                  LS    +         L  L +L +  
Sbjct: 173 ELRNLTFLDLSQCQLE----------------QLSPTAFNS--------LSSLQVLNMSH 208

Query: 367 NKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNS---INFSNNRLS 417
           N   S        L SL VLD S N +     +   +  P+S   +N + N  +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 1e-23
 Identities = 59/307 (19%), Positives = 98/307 (31%), Gaps = 64/307 (20%)

Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNH 152
           S T++      +T  +P   G+  +  +LEL  N +L          LT+LT L +S N 
Sbjct: 8   SGTEIRCNSKGLT-SVPT--GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 153 LSGK--IPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT----GEVP 206
           LS K    +S      L+ L L  N +   +SS       L  L    ++L       V 
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 207 QDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRF 266
             L     L+ LD+S                                        +L   
Sbjct: 123 LSLRN---LIYLDISHTHTRV-AF-----------------------NGIFNGLSSLEVL 155

Query: 267 RVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFI 325
           +++ N  + +    I + L +++ +DLS             +  +L  L M  N     +
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SL 214

Query: 326 PSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSL-KSLN 384
            +  Y+                        L  L +L    N + +S    L     SL 
Sbjct: 215 DTFPYK-----------------------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251

Query: 385 VLDLSNN 391
            L+L+ N
Sbjct: 252 FLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 56/272 (20%), Positives = 94/272 (34%), Gaps = 45/272 (16%)

Query: 83  QIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQ-QLAGTIPEELGNL 140
            +P  I   +S T LEL  N +   +P  +   L  L +L L  N     G   +     
Sbjct: 21  SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 141 TELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEIS--SVIANSTTLTMLSLYD 198
           T L  LD+S N +   +  + L L +L  L   +++L  ++S  SV  +   L  L +  
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISH 135

Query: 199 NSLTGEVP----QDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP 254
                         L     L VL ++ N                             LP
Sbjct: 136 THTR-VAFNGIFNGLSS---LEVLKMAGNSFQ-----------------------ENFLP 168

Query: 255 DSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTVGNARNLSE 313
           D     +NL    +S   LE  +     + L  + ++++S+N+F            +L  
Sbjct: 169 DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

Query: 314 LFMQRNQISGFIPSEIYRAI--SLVKIDLSDN 343
           L    N I      +  +    SL  ++L+ N
Sbjct: 228 LDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score =  108 bits (273), Expect = 7e-26
 Identities = 78/373 (20%), Positives = 135/373 (36%), Gaps = 96/373 (25%)

Query: 486 KRRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQR-EI-LEAMTEKNKVGQGGSGTVY 543
           + R+  Q    +  +   SS   Y    F    +D + E   E +     +G G  G V 
Sbjct: 6   QFRYESQL---QMVQVTGSSDNEYFYVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVM 62

Query: 544 K---IDLNSGEV---VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVK 596
                 ++   V   VAVK L     K  A  +++    + L +E++ +  +  H+NIV 
Sbjct: 63  NATAYGISKTGVSIQVAVKML-----KEKADSSER----EALMSELKMMTQLGSHENIVN 113

Query: 597 LY--CYFSSLYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRH---------------- 636
           L   C  S      L++EY   G+L + L   +     D                     
Sbjct: 114 LLGACTLSGPIY--LIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTF 171

Query: 637 ----KIAFGVAQGLAYL--HHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
                 A+ VA+G+ +L          +HRD+ + N+L+      K+ DFG+A+ +    
Sbjct: 172 EDLLCFAYQVAKGMEFLEFKS-----CVHRDLAARNVLVTHGKVVKICDFGLARDIM--- 223

Query: 691 GKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG 744
              S +  +      L     APE  +    T K DV+S+G++L E+ + G  P      
Sbjct: 224 ---SDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNP------ 274

Query: 745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR--------DEMIQVLRIAIRCTSKSPAT 796
                 Y   I VD             +G F+        +E+  +++    C +     
Sbjct: 275 ------YP-GIPVDA-----NFYKLIQNG-FKMDQPFYATEEIYIIMQ---SCWAFDSRK 318

Query: 797 RPTMNEVVQLLAE 809
           RP+   +   L  
Sbjct: 319 RPSFPNLTSFLGC 331

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score =  108 bits (273), Expect = 8e-26
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 24/229 (10%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
              +G+G    V + I+  +G+  AVK +     K ++S     +    LK E      +
Sbjct: 29  CEVIGKGPFSVVRRCINRETGQQFAVKIV--DVAKFTSSPGLSTE---DLKREASICHML 83

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GL 646
           +H +IV+L   +SS     +V+E+M   +L   + K        +    +  + Q    L
Sbjct: 84  KHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEAL 143

Query: 647 AYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            Y H +     IIHRD+K   +LL   + +   K+  FG+A  L   G          GT
Sbjct: 144 RYCHDNN----IIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGG---RVGT 196

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             ++APE           DV+  GV+L  L++G  P    F   K  ++
Sbjct: 197 PHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLP----FYGTKERLF 241

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score =  108 bits (271), Expect = 9e-26
 Identities = 67/284 (23%), Positives = 116/284 (40%), Gaps = 56/284 (19%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+G    V     + +G  VA+K +   +T+++ +   +L        EV  +  + H N
Sbjct: 24  GKGNFAKVKLARHILTGREVAIKII--DKTQLNPTSLQKL------FREVRIMKILNHPN 75

Query: 594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYLH-H 651
           IVKL+    +     L+ EY   G ++D L   G   +           +   + Y H  
Sbjct: 76  IVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHG--RMKEKEARSKFRQIVSAVQYCHQK 133

Query: 652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY- 710
                I+HRD+K+ N+LLD +   K+ADFG +      GGK        G   Y APE  
Sbjct: 134 R----IVHRDLKAENLLLDADMNIKIADFGFSN-EFTVGGKLDAF---CGAPPYAAPELF 185

Query: 711 ---AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
               Y      + DV+S GV+L  L++G  P +                    + + E+ 
Sbjct: 186 QGKKYDGP---EVDVWSLGVILYTLVSGSLPFDG-------------------QNLKELR 223

Query: 768 DKKLSGSFR------DEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           ++ L G +R       +   +L+   R    +P  R T+ ++++
Sbjct: 224 ERVLRGKYRIPFYMSTDCENLLK---RFLVLNPIKRGTLEQIMK 264

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score =  107 bits (270), Expect = 9e-26
 Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 47/241 (19%)

Query: 518 SFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           S     I +       +G G    V+      +G++ A+K +                 D
Sbjct: 1   SMQTTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCI----------KKSPAFRD 50

Query: 577 KGLKTEVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDW 632
             L+ E+  L  I+H+NIV L   +   +  Y   LV + +  G L+D  L +G      
Sbjct: 51  SSLENEIAVLKKIKHENIVTLEDIYESTTHYY---LVMQLVSGGELFDRILERG------ 101

Query: 633 PTRH-------KIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFG 681
                       +   V   + YLH +G    I+HRD+K  N+L    + N +  + DFG
Sbjct: 102 ---VYTEKDASLVIQQVLSAVKYLHENG----IVHRDLKPENLLYLTPEENSKIMITDFG 154

Query: 682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED 741
           ++K+      ++   +   GT GY+APE       +   D +S GV+   L+ G  P  +
Sbjct: 155 LSKME-----QNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYE 209

Query: 742 D 742
           +
Sbjct: 210 E 210

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score =  109 bits (275), Expect = 1e-25
 Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 48/235 (20%)

Query: 521 QREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
            R    + T+   +G G  G VY+    +SGE+VA+KK+                 DK  
Sbjct: 49  DRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---------------LQDKRF 93

Query: 580 KT-EVETLGNIRHKNIVKLYCYFSS-------LYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           K  E++ +  + H NIV+L  +F S       +Y NL V +Y+P     + +++   H  
Sbjct: 94  KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL-VLDYVP-----ETVYRVARHYS 147

Query: 632 W-----PTRHK--IAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVN-YQPKVADFGI 682
                 P  +     + + + LAY+H  G    I HRDIK  N+LLD +    K+ DFG 
Sbjct: 148 RAKQTLPVIYVKLYMYQLFRSLAYIHSFG----ICHRDIKPQNLLLDPDTAVLKLCDFGS 203

Query: 683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
           AK L    G+ + + +   +  Y APE  + +   T+  DV+S G VL EL+ G+
Sbjct: 204 AKQLVR--GEPNVSYIC--SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQ 254

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  106 bits (267), Expect = 2e-25
 Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 30/226 (13%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G   TV    +L +    A+K L  +R  +  +    +        E + +  + H 
Sbjct: 38  LGEGSFSTVVLARELATSREYAIKIL-EKRHIIKENKVPYV------TRERDVMSRLDHP 90

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GL 646
             VKLY  F     LY       Y  NG L   + K     +  TR    F  A+    L
Sbjct: 91  FFVKLYFTFQDDEKLY---FGLSYAKNGELLKYIRKIGSFDETCTR----FYTAEIVSAL 143

Query: 647 AYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
            YLH  G    IIHRD+K  NILL+ +   ++ DFG AKVL     +    +   GT  Y
Sbjct: 144 EYLHGKG----IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANS-FVGTAQY 198

Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
           ++PE      A    D+++ G ++ +L+ G  P       N+ +I+
Sbjct: 199 VSPELLTEKSACKSSDLWALGCIIYQLVAGLPPF---RAGNEYLIF 241

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  110 bits (276), Expect = 3e-25
 Identities = 75/405 (18%), Positives = 143/405 (35%), Gaps = 29/405 (7%)

Query: 41  TNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASI-GNVTSLTDLEL 99
              + LS ++N    + +L    I  L++LR++ L+   +   +   +      L  L++
Sbjct: 52  PRTKALSLSQN---SISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 100 TGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPE 159
           + N +  +I      + +LR L+L +N      + +E GNLT+LT L +S      ++  
Sbjct: 108 SHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDL 163

Query: 160 SILRLPKLRVLQLYNNSLS---GEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLV 216
             +    L  + L   S     GE  S+   +TT+  L  + NSL              +
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 217 VL------DLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD--SLARCKNLLRFRV 268
            L      D +  +L   L         L   L                   + +    +
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 269 SNNHLEGSIPEGI-----LSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISG 323
            N  +   I          +L  + I  +    F             ++   +  +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 324 FIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNS--SIPNSLSSLK 381
                     S   ++ + N+ +  +  G   LK+L  L+LQ N L +   +     ++ 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 382 SLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLSL 424
           SL  LD+S N L  +  +  C    +   +N S+N L+G +   L
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (253), Expect = 2e-22
 Identities = 80/401 (19%), Positives = 147/401 (36%), Gaps = 32/401 (7%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
             PM +LR LDLS N F        F NLT L  L  +     K  +L    +  L    
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA---KFRQLDLLPVAHLHLSC 173

Query: 72  IMV-LATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ--- 127
           I++ L +  + G    S+    + T L L  +  +         +  L  L+L   +   
Sbjct: 174 ILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 128 ---QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRL---PKLRVLQLYNNSLSGEI 181
              Q   T   EL     L ++ +     + K    + +      +  L +YN +++  I
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 182 SSVIANSTTLTMLSLYDNSLTGEVPQDLGQW-----SPLVVLDLSENKLSGPLPAKVCSR 236
                  +   + SL    +  +V     +      + + +  LS +         VC  
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM--VCPP 350

Query: 237 G--KLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEG---ILSLPHVSIID 291
                 +    QN+F+  +    +  K L    +  N L+ +  +      ++  +  +D
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLD 409

Query: 292 LSYNSF-SGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIP 350
           +S NS  S     T   A ++  L +  N ++G +   +     +  +DL +N +   IP
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IP 466

Query: 351 SGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN 391
             + +L+ L  L + SN+L S        L SL  + L +N
Sbjct: 467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 54/351 (15%), Positives = 106/351 (30%), Gaps = 45/351 (12%)

Query: 107 HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI-LRLP 165
           H+P    L    + L L  N  ++     ++  L+EL  L +S N +   +   + L   
Sbjct: 45  HVPK--DLPPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQ 100

Query: 166 KLRVLQLYNNSL----------------------SGEISSVIANSTTLTMLSLYDNSLTG 203
            L  L + +N L                         +     N T LT L L       
Sbjct: 101 DLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160

Query: 204 EVPQDLGQWS-PLVVLDLSENKLSGPLPAKVCSRG--KLQYFLVLQNMFSGVLPDSLARC 260
                +       ++LDL    + G     +       L       ++FS  +  S+   
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 261 KNL----LRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGN---ARNLSE 313
            +L    ++    N     +    +   P +  + L +   +   +  +      R +  
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 314 LFMQRNQISGFIPSEIYRAI-----SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK 368
           L +    I+  I  E +        SL+   + + +      +      ++N+ ML  + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 369 LNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLS 417
                     S  S   L+ + N+ T       C  L    ++    N L 
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 54/259 (20%), Positives = 96/259 (37%), Gaps = 45/259 (17%)

Query: 182 SSVIAN-STTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ 240
           + V  +       LSL  NS++     D+   S L VL LS N++   L   V       
Sbjct: 44  THVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFL----- 97

Query: 241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSF-S 298
                               ++L    VS+N L+ +I    + SL H   +DLS+N F  
Sbjct: 98  ------------------FNQDLEYLDVSHNRLQ-NISCCPMASLRH---LDLSFNDFDV 135

Query: 299 GPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSG------ 352
            P+    GN   L+ L +   +    +       + L  I L  +L+S  I  G      
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILL--DLVSYHIKGGETESLQ 192

Query: 353 IGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLS-NNLLTGYIPESLCELLPNS--- 408
           I N   L+L+   ++  +  +  S+++L  L + ++  N+     +   L EL       
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 409 -INFSNNRLSGPIPLSLIK 426
            +   +   +    + L +
Sbjct: 253 NVTLQHIETTWKCSVKLFQ 271

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score =  106 bits (267), Expect = 3e-25
 Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 30/243 (12%)

Query: 519 FDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           F Q+++ +      ++G G    V K  + ++G   A K +  ++++ S     +    +
Sbjct: 5   FKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSR----E 60

Query: 578 GLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK 637
            ++ EV  L  + H N++ L+  + +    +L+ E +  G L+D     L   +  +  +
Sbjct: 61  EIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDF----LAQKESLSEEE 116

Query: 638 IAFGVAQ---GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQAR 689
               + Q   G+ YLH       I H D+K  NI+L     P    K+ DFG+A  ++  
Sbjct: 117 ATSFIKQILDGVNYLHTKK----IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE-- 170

Query: 690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKN 748
                    I GT  ++APE         + D++S GV+   L++G  P    F GD K 
Sbjct: 171 --DGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP----FLGDTKQ 224

Query: 749 IIY 751
              
Sbjct: 225 ETL 227

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score =  105 bits (265), Expect = 3e-25
 Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 27/219 (12%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+G  G V + +D  +    AVK L  ++ K+      +  +    K E++ L  +RHKN
Sbjct: 14  GEGSYGKVKEVLDSETLCRRAVKIL--KKKKLRRIPNGEANV----KKEIQLLRRLRHKN 67

Query: 594 IVKLY--CYFSS---LYCNLLVYEYMPNGN--LWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           +++L    Y      +Y   +V EY   G   + D++ +          H     +  GL
Sbjct: 68  VIQLVDVLYNEEKQKMY---MVMEYCVCGMQEMLDSVPEK--RFPVCQAHGYFCQLIDGL 122

Query: 647 AYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
            YLH  G    I+H+DIK  N+LL      K++  G+A+ L      D+  T   G+  +
Sbjct: 123 EYLHSQG----IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTS-QGSPAF 177

Query: 706 LAPEYAYSSK--ATTKCDVYSFGVVLMELITGRKPVEDD 742
             PE A      +  K D++S GV L  + TG  P E D
Sbjct: 178 QPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD 216

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score =  106 bits (267), Expect = 5e-25
 Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 29/229 (12%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           K ++G+G    V + +   +G   A K +     K+SA D  +L      + E      +
Sbjct: 34  KEELGKGAFSVVRRCVHKTTGLEFAAKII--NTKKLSARDFQKL------EREARICRKL 85

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAY 648
           +H NIV+L+        + LV++ +  G L++ +  +                + + +AY
Sbjct: 86  QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAY 143

Query: 649 LH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            H +G    I+HR++K  N+LL         K+ADFG+A  +             AGT G
Sbjct: 144 CHSNG----IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN----DSEAWHGFAGTPG 195

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIYW 752
           YL+PE       +   D+++ GV+L  L+ G  P    F  ++++ +Y 
Sbjct: 196 YLSPEVLKKDPYSKPVDIWACGVILYILLVGYPP----FWDEDQHRLYA 240

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score =  105 bits (264), Expect = 1e-24
 Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 30/244 (12%)

Query: 518 SFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           +F Q+++ +      ++G G    V K  + ++G   A K +     K  +  + +    
Sbjct: 4   TFKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFI----KKRQSRASRRGVCR 59

Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           + ++ EV  L  + H NI+ L+  + +    +L+ E +  G L+D     L   +  +  
Sbjct: 60  EEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDF----LAQKESLSEE 115

Query: 637 KIAFGVAQ---GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQA 688
           +    + Q   G+ YLH       I H D+K  NI+L     P    K+ DFG+A  ++ 
Sbjct: 116 EATSFIKQILDGVNYLHTKK----IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE- 170

Query: 689 RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNK 747
                     I GT  ++APE         + D++S GV+   L++G  P    F GD K
Sbjct: 171 ---DGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP----FLGDTK 223

Query: 748 NIIY 751
               
Sbjct: 224 QETL 227

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score =  107 bits (268), Expect = 1e-24
 Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 28/228 (12%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
             ++G+G    V + + + +G+  A   +     K+SA D  +L      + E      +
Sbjct: 16  FEELGKGAFSVVRRCVKVLAGQEYAAMII--NTKKLSARDHQKL------EREARICRLL 67

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFGVAQGLAY 648
           +H NIV+L+   S    + L+++ +  G L++  + +   +            + + + +
Sbjct: 68  KHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVARE--YYSEADASHCIQQILEAVLH 125

Query: 649 LH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
            H  G    ++HR++K  N+LL         K+ADFG+A  ++  G + +     AGT G
Sbjct: 126 CHQMG----VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE--GEQQAWFG-FAGTPG 178

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
           YL+PE           D+++ GV+L  L+ G  P    F  ++++ +Y
Sbjct: 179 YLSPEVLRKDPYGKPVDLWACGVILYILLVGYPP----FWDEDQHRLY 222

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score =  104 bits (262), Expect = 1e-24
 Identities = 69/288 (23%), Positives = 110/288 (38%), Gaps = 63/288 (21%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G  G V+  +D    + V VK +  ++ KV      +      +  E+  L  + H N
Sbjct: 33  GSGAFGFVWTAVDKEKNKEVVVKFI--KKEKVLEDCWIEDPKLGKVTLEIAILSRVEHAN 90

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGN-LWDAL-HKGLVHLDWPTRHKIAFGVAQGLAY 648
           I+K+   F +        LV E   +G  L+  +       LD P    I   +   + Y
Sbjct: 91  IIKVLDIFENQGFFQ---LVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGY 145

Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           L       IIHRDIK  NI++  ++  K+ DFG A  L+ RG    T     GT  Y AP
Sbjct: 146 LRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAYLE-RGKLFYTF---CGTIEYCAP 198

Query: 709 EY----AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII-------YWVSIKV 757
           E      Y      + +++S GV L  L+    P    F + +  +       Y VS   
Sbjct: 199 EVLMGNPYRGP---ELEMWSLGVTLYTLVFEENP----FCELEETVEAAIHPPYLVS--- 248

Query: 758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
              + +M ++           ++Q            P  R T+ ++V 
Sbjct: 249 ---KELMSLVSG---------LLQP----------VPERRTTLEKLVT 274

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score =  103 bits (260), Expect = 2e-24
 Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 63/288 (21%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK- 592
           G GG G+VY  I ++    VA+K +  ++ ++S  D  +L     +  EV  L  +    
Sbjct: 52  GSGGFGSVYSGIRVSDNLPVAIKHV--EKDRIS--DWGELPNGTRVPMEVVLLKKVSSGF 107

Query: 593 -NIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYL 649
             +++L  +F      +L+ E   P  +L+D +  +G   L         + V + + + 
Sbjct: 108 SGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHC 165

Query: 650 H-HGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           H  G    ++HRDIK  NIL+D+N  + K+ DFG   +L     KD+  T   GT  Y  
Sbjct: 166 HNCG----VLHRDIKDENILIDLNRGELKLIDFGSGALL-----KDTVYTDFDGTRVYSP 216

Query: 708 PEY----AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI 763
           PE+     Y  +      V+S G++L +++ G  P E D                     
Sbjct: 217 PEWIRYHRYHGR---SAAVWSLGILLYDMVCGDIPFEHD--------------------- 252

Query: 764 MEVLDKKLSGSFR------DEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
               ++ + G          E   ++R    C +  P+ RPT  E+  
Sbjct: 253 ----EEIIRGQVFFRQRVSSECQHLIR---WCLALRPSDRPTFEEIQN 293

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (262), Expect = 2e-24
 Identities = 55/335 (16%), Positives = 107/335 (31%), Gaps = 39/335 (11%)

Query: 67  LTKLRIMVLATCALHGQIPASI-----GNVTSLTDLELTGNFITGHIPPEIGLLKNLRQL 121
                + V+ + +       +        +   +   L        IP   GL + ++ L
Sbjct: 6   WMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLN------SIPS--GLTEAVKSL 57

Query: 122 ELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGE 180
           +L  N+ +      +L     L  L ++ N ++  I E     L  L  L L  N LS  
Sbjct: 58  DLSNNR-ITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSP-LVVLDLSENKLSGPLPAKVCSR-GK 238
            SS     ++LT L+L  N         L      L +L +        +  K  +    
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175

Query: 239 LQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSF 297
           L+   +  +      P SL   +N+    +        + E  +     V  ++L     
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234

Query: 298 SGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLK 357
                                +++S    + + +  +   + ++D  L   +   +  + 
Sbjct: 235 DTF----------------HFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQIS 277

Query: 358 KLNLLMLQSNKLNSSIPNS-LSSLKSLNVLDLSNN 391
            L  L    N+L  S+P+     L SL  + L  N
Sbjct: 278 GLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  100 bits (252), Expect = 4e-23
 Identities = 59/294 (20%), Positives = 102/294 (34%), Gaps = 47/294 (15%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
            ++ LDLSNN  T     S      NL+ L    N    +  + E S   L  L  + L+
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSN---GINTIEEDSFSSLGSLEHLDLS 108

Query: 77  TCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI--GLLKNLRQLELYYNQQLAGTI 133
              L   + +S    ++SLT L L GN     +        L  L+ L +         I
Sbjct: 109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT-KI 165

Query: 134 PEE-LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLT 192
             +    LT L +L++  + L    P+S+  +  +  L L+       +   +  ++++ 
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 193 MLSLYDN--------SLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
            L L D          L+      L +      + +++  L                   
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF------------------ 267

Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSF 297
                   +   L +   LL    S N L+ S+P+GI   L  +  I L  N +
Sbjct: 268 -------QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.1 bits (242), Expect = 8e-22
 Identities = 56/262 (21%), Positives = 101/262 (38%), Gaps = 31/262 (11%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFR-LTKL 70
           FS + +L  LDLS N  +     S F  L++L  L+   N       L E+S+F  LTKL
Sbjct: 96  FSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGN---PYKTLGETSLFSHLTKL 151

Query: 71  RIMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQ 128
           +I+ +       +I       +T L +LE+  + +     P+    ++N+  L L+  Q 
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQH 210

Query: 129 LAGTIPEEL-GNLTELTDLDMSVNHLSGKIPESI--------LRLPKLRVLQLYNNSLSG 179
               + E      + +  L++    L       +        ++    R +++ + SL  
Sbjct: 211 --ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF- 267

Query: 180 EISSVIANSTTLTMLSLYDNSLTGEVPQD-LGQWSPLVVLDLSENKLSGPLPAKVCSRGK 238
           ++  ++   + L  L    N L   VP     + + L  + L  N          CS  +
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW-------DCSCPR 319

Query: 239 LQYFLVLQNMFSGVLPDSLARC 260
           + Y     N  S     S A+C
Sbjct: 320 IDYLSRWLNKNSQKEQGS-AKC 340

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.3 bits (188), Expect = 6e-15
 Identities = 38/269 (14%), Positives = 93/269 (34%), Gaps = 37/269 (13%)

Query: 158 PESILRLPKLRVLQLYNNSLSGEISSVIAN-STTLTMLSLYDNSLTGEVPQDLGQWSPLV 216
            ++ L   +  + +  + SL+    S+ +  +  +  L L +N +T     DL +   L 
Sbjct: 24  NQASLSCDRNGICKGSSGSLN----SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQ 79

Query: 217 VLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGS 276
            L L+ N ++  +                   FS +         +L    +S N+L  +
Sbjct: 80  ALVLTSNGINT-IEEDS---------------FSSL--------GSLEHLDLSYNYLS-N 114

Query: 277 IPEGILS-LPHVSIIDLSYNSFSG-PIANTVGNARNLSELFMQRNQISGFIPSEI-YRAI 333
           +       L  ++ ++L  N +      +   +   L  L +        I  +      
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 334 SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLL 393
            L ++++  + L    P  + +++ ++ L+L   +    +   +    S+  L+L +  L
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 394 TG----YIPESLCELLPNSINFSNNRLSG 418
                  +       L     F N +++ 
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITD 263

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score =  104 bits (262), Expect = 4e-24
 Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 53/225 (23%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT-EVETLGNIR 590
            +G G  G V++   + S EV A+KK+                 DK  K  E++ +  ++
Sbjct: 47  VIGNGSFGVVFQAKLVESDEV-AIKKV---------------LQDKRFKNRELQIMRIVK 90

Query: 591 HKNIVKLYCYFSS---------LYCNLLVYEYMPNGNLWDALHKGLVHLDW-----PTRH 636
           H N+V L  +F S         L    LV EY+P     + +++   H        P   
Sbjct: 91  HPNVVDLKAFFYSNGDKKDEVFLN---LVLEYVP-----ETVYRASRHYAKLKQTMPMLL 142

Query: 637 --KIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARGGK 692
                + + + LAY+H  G    I HRDIK  N+LLD      K+ DFG AK+L    G+
Sbjct: 143 IKLYMYQLLRSLAYIHSIG----ICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL--IAGE 196

Query: 693 DSTTTVIAGTYGYLAPEYAY-SSKATTKCDVYSFGVVLMELITGR 736
            + + +   +  Y APE  + ++  TT  D++S G V+ EL+ G+
Sbjct: 197 PNVSYIC--SRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQ 239

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score =  103 bits (258), Expect = 5e-24
 Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 33/215 (15%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVETL 586
             VG+G  G V K  + ++G +VA+KK        S         DK +K     E++ L
Sbjct: 31  GLVGEGSYGMVMKCRNKDTGRIVAIKKF-----LES-------DDDKMVKKIAMREIKLL 78

Query: 587 GNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
             +RH+N+V L          Y   LV+E++ +  + D L      LD+    K  F + 
Sbjct: 79  KQLRHENLVNLLEVCKKKKRWY---LVFEFVDH-TILDDLELFPNGLDYQVVQKYLFQII 134

Query: 644 QGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            G+ + H H     IIHRDIK  NIL+  +   K+ DFG A+ L A  G+     V   T
Sbjct: 135 NGIGFCHSHN----IIHRDIKPENILVSQSGVVKLCDFGFARTLAAP-GEVYDDEVA--T 187

Query: 703 YGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
             Y APE            DV++ G ++ E+  G 
Sbjct: 188 RWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGE 222

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score =  103 bits (258), Expect = 5e-24
 Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 43/235 (18%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG-N 588
           K  +G G      + I   +    AVK +   +                   E+E L   
Sbjct: 27  KEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDP--------------TEEIEILLRY 72

Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH-------KIAFG 641
            +H NI+ L   +       +V E M  G L D + +         +         + F 
Sbjct: 73  GQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILR--------QKFFSEREASAVLFT 124

Query: 642 VAQGLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQP-KVADFGIAKVLQARGGKDSTT 696
           + + + YLH  G    ++HRD+K +NIL      N +  ++ DFG AK L+A  G   T 
Sbjct: 125 ITKTVEYLHAQG----VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMT- 179

Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
                T  ++APE          CD++S GV+L  ++TG  P  +   D    I 
Sbjct: 180 --PCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEIL 232

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score =  101 bits (254), Expect = 6e-24
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 44/234 (18%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +N +G+G  G V   +   +    A KK+              ++     K E+E + ++
Sbjct: 14  ENTIGRGSWGEVKIAVQKGTRIRRAAKKI----------PKYFVEDVDRFKQEIEIMKSL 63

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFGVAQG 645
            H NI++LY  F   + +Y   LV E    G L++  +HK           +I   V   
Sbjct: 64  DHPNIIRLYETFEDNTDIY---LVMELCTGGELFERVVHKR--VFRESDAARIMKDVLSA 118

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
           +AY H       + HRD+K  N L      +   K+ DFG+A   +             G
Sbjct: 119 VAYCHKLN----VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK----PGKMMRTKVG 170

Query: 702 TYGYLAPE---YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
           T  Y++P+     Y      +CD +S GV++  L+ G  P    F     + + 
Sbjct: 171 TPYYVSPQVLEGLYG----PECDEWSAGVMMYVLLCGYPP----FSAPTDSEVM 216

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score =  102 bits (256), Expect = 7e-24
 Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 33/215 (15%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVETL 586
            K+G+G  G V+K  + ++G++VA+KK        S       + D  +K     E+  L
Sbjct: 9   GKIGEGSYGVVFKCRNRDTGQIVAIKKF-----LES-------EDDPVIKKIALREIRML 56

Query: 587 GNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
             ++H N+V L   F     L+   LV+EY  +  +   L +    +       I +   
Sbjct: 57  KQLKHPNLVNLLEVFRRKRRLH---LVFEYCDH-TVLHELDRYQRGVPEHLVKSITWQTL 112

Query: 644 QGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           Q + + H H      IHRD+K  NIL+  +   K+ DFG A++L           V   T
Sbjct: 113 QAVNFCHKHN----CIHRDVKPENILITKHSVIKLCDFGFARLLTGP-SDYYDDEVA--T 165

Query: 703 YGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
             Y +PE            DV++ G V  EL++G 
Sbjct: 166 RWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGV 200

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score =  101 bits (254), Expect = 8e-24
 Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 36/234 (15%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
             ++G G    V K     +G+  A K +  +R   S     +    + ++ EV  L  I
Sbjct: 10  GEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSR----EEIEREVNILREI 65

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ-- 644
           RH NI+ L+  F   + +    L+ E +  G L+D     L   +  T  +    + Q  
Sbjct: 66  RHPNIITLHDIFENKTDVV---LILELVSGGELFDF----LAEKESLTEDEATQFLKQIL 118

Query: 645 -GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQARGGKDSTTTV 698
            G+ YLH       I H D+K  NI+L     P    K+ DFGIA  ++      +    
Sbjct: 119 DGVHYLHSKR----IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIE----AGNEFKN 170

Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
           I GT  ++APE         + D++S GV+   L++G  P    F G+ K    
Sbjct: 171 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP----FLGETKQETL 220

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score =  102 bits (255), Expect = 8e-24
 Identities = 68/290 (23%), Positives = 110/290 (37%), Gaps = 65/290 (22%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL----GNI 589
           G+GG GTV+    L     VA+K +   R +V                EV  L       
Sbjct: 40  GKGGFGTVFAGHRLTDRLQVAIKVI--PRNRVLGWSPLSDS--VTCPLEVALLWKVGAGG 95

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEY-MPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLA 647
            H  +++L  +F +    +LV E  +P  +L+D +  KG   L           V   + 
Sbjct: 96  GHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQ 153

Query: 648 YLH-HGLLSPIIHRDIKSTNILLDVNYQP-KVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
           + H  G    ++HRDIK  NIL+D+     K+ DFG   +L      D   T   GT  Y
Sbjct: 154 HCHSRG----VVHRDIKDENILIDLRRGCAKLIDFGSGALL-----HDEPYTDFDGTRVY 204

Query: 706 LAPEY----AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
             PE+     Y +       V+S G++L +++ G  P E D                   
Sbjct: 205 SPPEWISRHQYHAL---PATVWSLGILLYDMVCGDIPFERD------------------- 242

Query: 762 GIMEVLDKKLSGSFR------DEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
                  + L            +   ++R   RC +  P++RP++ E++ 
Sbjct: 243 ------QEILEAELHFPAHVSPDCCALIR---RCLAPKPSSRPSLEEILL 283

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score =  101 bits (254), Expect = 1e-23
 Identities = 62/263 (23%), Positives = 101/263 (38%), Gaps = 48/263 (18%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HK 592
           G+G    V   I+L + +  AVK +          +     +   +  EVE L   + H+
Sbjct: 22  GEGAHARVQTCINLITSQEYAVKII----------EKQPGHIRSRVFREVEMLYQCQGHR 71

Query: 593 NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH-------KIAFGVAQG 645
           N+++L  +F       LV+E M  G++   +HK         RH        +   VA  
Sbjct: 72  NVLELIEFFEEEDRFYLVFEKMRGGSILSHIHK--------RRHFNELEASVVVQDVASA 123

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQARGGKDSTTTV--- 698
           L +LH  G    I HRD+K  NIL +   Q    K+ DF +   ++  G     +T    
Sbjct: 124 LDFLHNKG----IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELL 179

Query: 699 -IAGTYGYLAPE-----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
              G+  Y+APE        +S    +CD++S GV+L  L++G  P    F         
Sbjct: 180 TPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPP----FVGRCGSDCG 235

Query: 753 VSIKVDTKEGIMEVLDKKLSGSF 775
                        + +    G +
Sbjct: 236 WDRGEACPACQNMLFESIQEGKY 258

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score =  101 bits (253), Expect = 1e-23
 Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 35/218 (16%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK-GLKT----EVET 585
            K+G+G  GTV+K  +  + E+VA+K++             +L  D  G+ +    E+  
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRV-------------RLDDDDEGVPSSALREICL 54

Query: 586 LGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
           L  ++HKNIV+L+        L    LV+E+    +L          LD        F +
Sbjct: 55  LKELKHKNIVRLHDVLHSDKKLT---LVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQL 110

Query: 643 AQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
            +GL + H       ++HRD+K  N+L++ N + K+A+FG+A+       +  +  V+  
Sbjct: 111 LKGLGFCHSRN----VLHRDLKPQNLLINRNGELKLANFGLARAFGIP-VRCYSAEVV-- 163

Query: 702 TYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKP 738
           T  Y  P+  + +K  +T  D++S G +  EL    +P
Sbjct: 164 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP 201

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score =  100 bits (251), Expect = 2e-23
 Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 37/220 (16%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G  G V       +G  VAVK L   R K+ + D     +   +K E++ L   RH +
Sbjct: 20  GVGTFGKVKIGEHQLTGHKVAVKIL--NRQKIRSLD-----VVGKIKREIQNLKLFRHPH 72

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYL 649
           I+KLY   S+    +   +V EY+  G L+D +   G   ++     ++   +   + Y 
Sbjct: 73  IIKLYQVISTPTDFF---MVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYC 127

Query: 650 H-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           H H     ++HRD+K  N+LLD +   K+ADFG++  + + G    T+    G+  Y AP
Sbjct: 128 HRHM----VVHRDLKPENVLLDAHMNAKIADFGLSN-MMSDGEFLRTS---CGSPNYAAP 179

Query: 709 E------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           E      YA       + D++S GV+L  L+ G  P +D+
Sbjct: 180 EVISGRLYAGP-----EVDIWSCGVILYALLCGTLPFDDE 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  101 bits (252), Expect = 2e-23
 Identities = 62/307 (20%), Positives = 94/307 (30%), Gaps = 42/307 (13%)

Query: 129 LAGTIPEELGNLTELTDLDMSVN-HLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIA- 186
           L     E  G    L  L   V+          I++   L+ L +    +   I      
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 187 --NSTTLTMLSLYDNSLTGEVPQDLGQ--WSPLVVLDLSENKLSGPLPAKVCSRGKLQYF 242
               + L  L+L +  +TG  P  L +     L +L+L     +                
Sbjct: 91  VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA------------ 138

Query: 243 LVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI- 301
                 +   L   L     L    ++  H      E +   P +S +DLS N   G   
Sbjct: 139 ------WLAELQQWLK--PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 302 ---ANTVGNARNLSELFMQRNQ---ISGFIPSEIYRAISLVKIDLSDNLLSG-PIPSGIG 354
              A        L  L ++       SG   +     + L  +DLS N L          
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 355 NLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFS 412
              +LN L L    L   +P  L +   L+VLDLS N L    P      LP   +++  
Sbjct: 251 WPSQLNSLNLSFTGL-KQVPKGLPA--KLSVLDLSYNRLDR-NPSPDE--LPQVGNLSLK 304

Query: 413 NNRLSGP 419
            N     
Sbjct: 305 GNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.3 bits (216), Expect = 7e-19
 Identities = 60/305 (19%), Positives = 93/305 (30%), Gaps = 62/305 (20%)

Query: 7   TGTLPDFSPMQNLRRLDLSNNLFTGQFP---LSVFNLTNLEVLSFNENPGFKLWKLPESS 63
            G   D     +L+RL +       +     L V  ++ L+ L+       ++       
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL---EVTGTAPPP 114

Query: 64  IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL 123
           +   T   + +L           ++ NV+  T                  L   L+ L +
Sbjct: 115 LLEATGPDLNIL-----------NLRNVSWATRDAWLAELQQ-------WLKPGLKVLSI 156

Query: 124 YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI----LRLPKLRVLQLYNN---S 176
                      E++     L+ LD+S N   G+         L+ P L+VL L N    +
Sbjct: 157 AQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSP-LVVLDLSENKLSGPLPAKVCS 235
            SG  S++ A    L  L L  NSL          W   L  L+LS   L          
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-------- 267

Query: 236 RGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYN 295
                            +P  L     L    +S N L+   P     LP V  + L  N
Sbjct: 268 -----------------VPKGLPA--KLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGN 306

Query: 296 SFSGP 300
            F   
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 6e-17
 Identities = 46/235 (19%), Positives = 75/235 (31%), Gaps = 19/235 (8%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLT--NLEVLSFNEN--PGFKLWKLPE 61
           +         +  L+ L L N   TG  P  +   T  +L +L+           W L E
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAE 142

Query: 62  SSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGL----LKN 117
              +    L+++ +A           +    +L+ L+L+ N   G       L       
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 118 LRQLELYYNQ--QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI-LRLPKLRVLQLYN 174
           L+ L L        +G          +L  LD+S N L             +L  L L  
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 175 NSLSGEISSVIANSTTLTMLSLYDNSLTG-EVPQDLGQWSPLVVLDLSENKLSGP 228
             L  ++   +     L++L L  N L     P +L Q   +  L L  N     
Sbjct: 263 TGLK-QVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQ---VGNLSLKGNPFLDS 311

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score =  101 bits (254), Expect = 2e-23
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 30/230 (13%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           ++ D +   +   + + +G+G   TVYK  D N+ ++VA+KK+     K+        + 
Sbjct: 1   MALDVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKI-----KLGHRS----EA 51

Query: 576 DKGLKT----EVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLV 628
             G+      E++ L  + H NI+ L   F   S++    LV+++M   +L   +    +
Sbjct: 52  KDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS---LVFDFMET-DLEVIIKDNSL 107

Query: 629 HLDWPTRHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ 687
            L             QGL YLH H     I+HRD+K  N+LLD N   K+ADFG+AK   
Sbjct: 108 VLTPSHIKAYMLMTLQGLEYLHQHW----ILHRDLKPNNLLLDENGVLKLADFGLAKSFG 163

Query: 688 ARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
           +   +  T  V+  T  Y APE  + ++      D+++ G +L EL+   
Sbjct: 164 S-PNRAYTHQVV--TRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV 210

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score =  101 bits (253), Expect = 2e-23
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 34/233 (14%)

Query: 530 EKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN 588
              ++G+G    V + I  ++G+  A K L  ++ +       ++        E+  L  
Sbjct: 33  TSKELGRGKFAVVRQCISKSTGQEYAAKFL--KKRRRGQDCRAEI------LHEIAVLEL 84

Query: 589 IRH-KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQ-- 644
            +    ++ L+  + +    +L+ EY   G ++     +    +   + + +   + Q  
Sbjct: 85  AKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMV---SENDVIRLIKQIL 141

Query: 645 -GLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
            G+ YLH +     I+H D+K  NILL         K+ DFG+++ +    G       I
Sbjct: 142 EGVYYLHQNN----IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI----GHACELREI 193

Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
            GT  YLAPE       TT  D+++ G++   L+T   P    F G++    Y
Sbjct: 194 MGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSP----FVGEDNQETY 242

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  104 bits (261), Expect = 2e-23
 Identities = 55/270 (20%), Positives = 105/270 (38%), Gaps = 33/270 (12%)

Query: 490 SKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLN 548
             +   T      +  F  +       +      +L+      ++G G  G V++  +  
Sbjct: 121 IVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERA 180

Query: 549 SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNL 608
           +G   A K +         SD + +      + E++T+  +RH  +V L+  F      +
Sbjct: 181 TGNNFAAKFV----MTPHESDKETV------RKEIQTMSVLRHPTLVNLHDAFEDDNEMV 230

Query: 609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLAYLH-HGLLSPIIHRDIKS 664
           ++YE+M  G L++ +      +   +  +    + Q   GL ++H +      +H D+K 
Sbjct: 231 MIYEFMSGGELFEKVADEHNKM---SEDEAVEYMRQVCKGLCHMHENN----YVHLDLKP 283

Query: 665 TNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDV 722
            NI+         K+ DFG+   L        +  V  GT  + APE A         D+
Sbjct: 284 ENIMFTTKRSNELKLIDFGLTAHLD----PKQSVKVTTGTAEFAAPEVAEGKPVGYYTDM 339

Query: 723 YSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
           +S GV+   L++G  P    F G+N +   
Sbjct: 340 WSVGVLSYILLSGLSP----FGGENDDETL 365

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score =  100 bits (251), Expect = 3e-23
 Identities = 56/253 (22%), Positives = 99/253 (39%), Gaps = 50/253 (19%)

Query: 526 EAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE 584
           +   +   +G+G      K +   S +  AVK +   +   +             + E+ 
Sbjct: 11  DLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKII--SKRMEAN-----------TQKEIT 57

Query: 585 TLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH------- 636
            L     H NIVKL+  F       LV E +  G L++ + K         +H       
Sbjct: 58  ALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKK--------KKHFSETEAS 109

Query: 637 KIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGK 692
            I   +   ++++H  G    ++HRD+K  N+L    + N + K+ DFG A++       
Sbjct: 110 YIMRKLVSAVSHMHDVG----VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQP 165

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
             T      T  Y APE    +     CD++S GV+L  +++G+ P    F  +      
Sbjct: 166 LKT---PCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVP----FQSHDR---- 214

Query: 753 VSIKVDTKEGIME 765
            S+   +   IM+
Sbjct: 215 -SLTCTSAVEIMK 226

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (255), Expect = 6e-23
 Identities = 58/267 (21%), Positives = 94/267 (35%), Gaps = 41/267 (15%)

Query: 132 TIPEELGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTT 190
            +P+ +   +    L++  N++   I     R L  L VLQL  NS+            +
Sbjct: 68  EVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124

Query: 191 LTMLSLYDNSLTG---EVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN 247
           L  L L+DN LT       + L +   L  L L  N +                      
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSK---LRELWLRNNPI---------------------- 159

Query: 248 MFSGVLPDSLARCKNLLRFRVS-NNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTV 305
               +   +  R  +L+R  +     LE  I EG    L ++  ++L   +        +
Sbjct: 160 --ESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDM--PNL 214

Query: 306 GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSG-IGNLKKLNLLML 364
                L EL M  N      P   +   SL K+ + ++ +S  I       L  L  L L
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNL 273

Query: 365 QSNKLNSSIPNSLSSLKSLNVLDLSNN 391
             N L+S   +  + L+ L  L L +N
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (252), Expect = 1e-22
 Identities = 63/254 (24%), Positives = 95/254 (37%), Gaps = 23/254 (9%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKL 70
            F  + +L  L L  N    Q  +  F  L +L  L   +N    L  +P  +   L+KL
Sbjct: 94  TFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN---WLTVIPSGAFEYLSKL 149

Query: 71  RIMVLATCALHGQIPASI-GNVTSLTDLELTG-NFITGHIPPEI-GLLKNLRQLELYYNQ 127
           R + L    +   IP+     V SL  L+L     +  +I       L NL+ L L    
Sbjct: 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCN 207

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIAN 187
            +   +P  L  L  L +L+MS NH     P S   L  L+ L + N+ +S    +    
Sbjct: 208 -IK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 188 STTLTMLSLYDNSLTGEVPQD-LGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQ 246
             +L  L+L  N+L+  +P D       LV L L  N    P     C    + +     
Sbjct: 265 LASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN----PW---NCDC-DILWLAWWL 315

Query: 247 NMFSGVLPDSLARC 260
             +         RC
Sbjct: 316 REYIPTNSTCCGRC 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 98.7 bits (246), Expect = 7e-22
 Identities = 56/326 (17%), Positives = 105/326 (32%), Gaps = 84/326 (25%)

Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNH 152
             + +  T   ++  +P   G+  N R L L  N  +     +   +L  L  L +  N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQ--GIPSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS 110

Query: 153 LSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ 211
           +  +I       L  L  L+L++N L+                      +     + L +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLT---------------------VIPSGAFEYLSK 148

Query: 212 WSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN- 270
              L  L L  N +                          +   +  R  +L+R  +   
Sbjct: 149 ---LRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGEL 181

Query: 271 NHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIY 330
             LE  I EG                             NL  L +    I   +P+ + 
Sbjct: 182 KKLE-YISEGAFE-----------------------GLFNLKYLNLGMCNIK-DMPN-LT 215

Query: 331 RAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSN 390
             + L ++++S N      P     L  L  L + +++++    N+   L SL  L+L++
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 391 NLLTGYIPESLCELLPN--SINFSNN 414
           N L+  +P  L   L     ++  +N
Sbjct: 276 NNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.6 bits (238), Expect = 7e-21
 Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 11/212 (5%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
           N R L+L  N        +  +L +LEVL    N    + ++   +   L  L  + L  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN---SIRQIEVGAFNGLASLNTLELFD 132

Query: 78  CALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPE 135
             L   IP+     ++ L +L L  N I   IP      + +L +L+L   ++L   I E
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YISE 189

Query: 136 E-LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTML 194
                L  L  L++ + ++   +P ++  L  L  L++  N             ++L  L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
            + ++ ++          + LV L+L+ N LS
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRL 67
            +P+ +P+  L  L++S N F  +     F  L++L+ L    +   ++  +  ++   L
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS---QVSLIERNAFDGL 265

Query: 68  TKLRIMVLATCALHGQIPASI-GNVTSLTDLELTGN 102
             L  + LA   L   +P  +   +  L +L L  N
Sbjct: 266 ASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 98.4 bits (246), Expect = 6e-23
 Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 65/291 (22%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+G  G V   ++  + E VAVK +     +        +   + +K E+     + H+N
Sbjct: 16  GEGAYGEVQLAVNRVTEEAVAVKIV--DMKRA-------VDCPENIKKEICINKMLNHEN 66

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHK----IAFGVAQ 644
           +VK Y +       Y   L  EY   G L+D +    G+   D   +      +A     
Sbjct: 67  VVKFYGHRREGNIQY---LFLEYCSGGELFDRIEPDIGMPEPD--AQRFFHQLMA----- 116

Query: 645 GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS--TTTVIAG 701
           G+ YLH  G    I HRDIK  N+LLD     K++DFG+A V +    ++         G
Sbjct: 117 GVVYLHGIG----ITHRDIKPENLLLDERDNLKISDFGLATVFR-YNNRERLLNKMC--G 169

Query: 702 TYGYLAPE----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV 757
           T  Y+APE      + ++     DV+S G+VL  ++ G  P +      +    W     
Sbjct: 170 TLPYVAPELLKRREFHAE---PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK---- 222

Query: 758 DTKEGIMEVLDKKLSGSFRD---EMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             ++       KK+  +      +++            +P+ R T+ ++ +
Sbjct: 223 --EKKTYLNPWKKIDSAPLALLHKILVE----------NPSARITIPDIKK 261

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 99.6 bits (249), Expect = 7e-23
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 36/234 (15%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
             ++G G    V K  + ++G   A K +  +RTK S     +    + ++ EV  L  I
Sbjct: 16  GEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSR----EDIEREVSILKEI 71

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ-- 644
           +H N++ L+  +   + +    L+ E +  G L+D     L   +  T  +    + Q  
Sbjct: 72  QHPNVITLHEVYENKTDVI---LILELVAGGELFDF----LAEKESLTEEEATEFLKQIL 124

Query: 645 -GLAYLH-HGLLSPIIHRDIKSTNILL----DVNYQPKVADFGIAKVLQARGGKDSTTTV 698
            G+ YLH       I H D+K  NI+L        + K+ DFG+A  +       +    
Sbjct: 125 NGVYYLHSLQ----IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----FGNEFKN 176

Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
           I GT  ++APE         + D++S GV+   L++G  P    F GD K    
Sbjct: 177 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP----FLGDTKQETL 226

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 98.8 bits (247), Expect = 1e-22
 Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 34/229 (14%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
              +G+G  G V++ ++ +S +    K +     KV  +D   +      K E+  L   
Sbjct: 10  AEDLGRGEFGIVHRCVETSSKKTYMAKFV-----KVKGTDQVLV------KKEISILNIA 58

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GL 646
           RH+NI+ L+  F S+   ++++E++   ++++ ++     L      +I   V Q    L
Sbjct: 59  RHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFEL---NEREIVSYVHQVCEAL 115

Query: 647 AYLH-HGLLSPIIHRDIKSTNILL--DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            +LH H     I H DI+  NI+     +   K+ +FG A+ L+          ++    
Sbjct: 116 QFLHSHN----IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK----PGDNFRLLFTAP 167

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
            Y APE       +T  D++S G ++  L++G  P    F  +    I 
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINP----FLAETNQQII 212

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 98.4 bits (246), Expect = 2e-22
 Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 34/215 (15%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL-KT---EVETL 586
           +K+G+G   TVYK     +  +VA+K++             +L+ ++G   T   EV  L
Sbjct: 8   DKLGEGTYATVYKGKSKLTDNLVALKEI-------------RLEHEEGAPCTAIREVSLL 54

Query: 587 GNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
            +++H NIV L+       SL    LV+EY+   +L   L      ++        F + 
Sbjct: 55  KDLKHANIVTLHDIIHTEKSLT---LVFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLL 110

Query: 644 QGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           +GLAY H       ++HRD+K  N+L++   + K+ADFG+A+       K     V+  T
Sbjct: 111 RGLAYCHRQK----VLHRDLKPQNLLINERGELKLADFGLARAKSIP-TKTYDNEVV--T 163

Query: 703 YGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
             Y  P+    S   +T+ D++  G +  E+ TGR
Sbjct: 164 LWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGR 198

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 33/229 (14%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
             ++G G  G V++ ++  +G V   K +          D   +      K E+  +  +
Sbjct: 56  LEELGSGAFGVVHRCVEKATGRVFVAKFI----NTPYPLDKYTV------KNEISIMNQL 105

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GL 646
            H  ++ L+  F   Y  +L+ E++  G L+D +      +   +  ++   + Q   GL
Sbjct: 106 HHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKM---SEAEVINYMRQACEGL 162

Query: 647 AYLH-HGLLSPIIHRDIKSTNILL--DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            ++H H     I+H DIK  NI+         K+ DFG+A  L      D    V   T 
Sbjct: 163 KHMHEHS----IVHLDIKPENIMCETKKASSVKIIDFGLATKLN----PDEIVKVTTATA 214

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
            + APE           D+++ GV+   L++G  P    F G++     
Sbjct: 215 EFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSP----FAGEDDLETL 259

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 66/291 (22%), Positives = 117/291 (40%), Gaps = 65/291 (22%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+G  G V   ++  + E VAVK +     +        +   + +K E+     + H+N
Sbjct: 16  GEGAYGEVQLAVNRVTEEAVAVKIV--DMKRA-------VDCPENIKKEICINKMLNHEN 66

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDAL--HKGLVHLDWPTRHK----IAFGVAQ 644
           +VK Y +       Y   L  EY   G L+D +    G+   +   +      +A     
Sbjct: 67  VVKFYGHRREGNIQY---LFLEYCSGGELFDRIEPDIGMP--EPDAQRFFHQLMA----- 116

Query: 645 GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS--TTTVIAG 701
           G+ YLH  G    I HRDIK  N+LLD     K++DFG+A V +    ++         G
Sbjct: 117 GVVYLHGIG----ITHRDIKPENLLLDERDNLKISDFGLATVFR-YNNRERLLNKMC--G 169

Query: 702 TYGYLAPE----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV 757
           T  Y+APE      + ++     DV+S G+VL  ++ G  P +      +    W     
Sbjct: 170 TLPYVAPELLKRREFHAE---PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK---- 222

Query: 758 DTKEGIMEVLDKKLSGSFRD---EMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             ++       KK+  +      +++            +P+ R T+ ++ +
Sbjct: 223 --EKKTYLNPWKKIDSAPLALLHKILVE----------NPSARITIPDIKK 261

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 99.0 bits (247), Expect = 2e-22
 Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 40/240 (16%)

Query: 512 KSFHRIS-FDQR-EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSAS 568
            +F+ +   D    +L+       +G G  G V    D      VA+KKL    ++   +
Sbjct: 9   NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKL----SRPFQN 64

Query: 569 DTDQLQLDKGLKTEVETLGNIRHKNIVKLY---------CYFSSLYCNLLVYEYMPNGNL 619
            T      K    E+  +  + HKNI+ L            F  +Y   +V E M   NL
Sbjct: 65  QTHA----KRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVY---IVMELMDA-NL 116

Query: 620 WDALHKGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPK 676
              +   L         ++++ + Q   G+ +LH      IIHRD+K +NI++  +   K
Sbjct: 117 CQVIQMEL------DHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLK 167

Query: 677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           + DFG+A+      G     T    T  Y APE           D++S G ++ E+I G 
Sbjct: 168 ILDFGLARTA----GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 223

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score =  100 bits (250), Expect = 2e-22
 Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 40/240 (16%)

Query: 512 KSFHRIS-FDQR-EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSAS 568
             F+ +   D    +L+       +G G  G V    D      VA+KKL    ++   +
Sbjct: 46  NQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKL----SRPFQN 101

Query: 569 DTDQLQLDKGLKTEVETLGNIRHKNIVKLY---------CYFSSLYCNLLVYEYMPNGNL 619
            T      K    E+  +  + HKNI+ L            F  +Y   LV E M   NL
Sbjct: 102 QTHA----KRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVY---LVMELMDA-NL 153

Query: 620 WDALHKGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPK 676
              +   L         ++++ + Q   G+ +LH      IIHRD+K +NI++  +   K
Sbjct: 154 CQVIQMEL------DHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLK 204

Query: 677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           + DFG+A+      G     T    T  Y APE           D++S G ++ E++  +
Sbjct: 205 ILDFGLARTA----GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 98.5 bits (246), Expect = 3e-22
 Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 43/226 (19%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK-GLKT----EVET 585
            K+GQG  G V+K     +G+ VA+KK+              ++ +K G       E++ 
Sbjct: 23  AKIGQGTFGEVFKARHRKTGQKVALKKV-------------LMENEKEGFPITALREIKI 69

Query: 586 LGNIRHKNIVKLY-----------CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
           L  ++H+N+V L                S+Y   LV+++  + +L   L   LV      
Sbjct: 70  LQLLKHENVVNLIEICRTKASPYNRCKGSIY---LVFDFCEH-DLAGLLSNVLVKFTLSE 125

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK---VLQARGG 691
             ++   +  GL Y+H    + I+HRD+K+ N+L+  +   K+ADFG+A+   + +    
Sbjct: 126 IKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQP 182

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
              T  V+  T  Y  PE     +      D++  G ++ E+ T  
Sbjct: 183 NRYTNRVV--TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRS 226

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 13/211 (6%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
             +R+ L  N  +     S     NL +L  + N    L ++  ++   L  L  + L+ 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN---VLARIDAAAFTGLALLEQLDLSD 89

Query: 78  CALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPE 135
            A    +  +    +  L  L L    +   + P +   L  L+ L L  N  L   +P+
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-LQ-ALPD 146

Query: 136 E-LGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLTM 193
           +   +L  LT L +  N +S  +PE   R L  L  L L+ N ++        +   L  
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 194 LSLYDNSLTGEVPQD-LGQWSPLVVLDLSEN 223
           L L+ N+L+  +P + L     L  L L++N
Sbjct: 206 LYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 48/266 (18%), Positives = 92/266 (34%), Gaps = 61/266 (22%)

Query: 132 TIPEELGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTT 190
            +P  +        + +  N +S  +P +  R    L +L L++N L+   ++       
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 191 LTMLSLYDNSLTGEVP----QDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQ 246
           L  L L DN+    V       LG+   L  L L    L   L                 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGR---LHTLHLDRCGLQE-LG---------------- 121

Query: 247 NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTV 305
                  P        L    + +N L+ ++P+     L +++ + L  N  S       
Sbjct: 122 -------PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 306 GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQ 365
               +L  L + +N+++  +    +R                       +L +L  L L 
Sbjct: 174 RGLHSLDRLLLHQNRVA-HVHPHAFR-----------------------DLGRLMTLYLF 209

Query: 366 SNKLNSSIPNSLSSLKSLNVLDLSNN 391
           +N L++    +L+ L++L  L L++N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.3 bits (209), Expect = 5e-18
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
           F+ +  L +LDLS+N        + F  L  L  L  +      L +L       L  L+
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC---GLQELGPGLFRGLAALQ 132

Query: 72  IMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQL 129
            + L   AL   +P     ++ +LT L L GN I+  +P      L +L +L L+ N ++
Sbjct: 133 YLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN-RV 189

Query: 130 AGTIPEE-LGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSL 177
           A  +      +L  L  L +  N+LS  +P   L  L  L+ L+L +N  
Sbjct: 190 A-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 56/262 (21%)

Query: 157 IPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLV 216
           +P  I      + + L+ N +S   ++       LT+L L+ N L           + L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 217 VLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGS 276
            LDLS+N     +                        P +      L    +    L+  
Sbjct: 84  QLDLSDNAQLRSVD-----------------------PATFHGLGRLHTLHLDRCGLQ-E 119

Query: 277 IPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRA-ISL 335
           +  G+                             L  L++Q N +   +P + +R   +L
Sbjct: 120 LGPGLFR-----------------------GLAALQYLYLQDNALQ-ALPDDTFRDLGNL 155

Query: 336 VKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT 394
             + L  N +S  +P      L  L+ L+L  N++    P++   L  L  L L  N L+
Sbjct: 156 THLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 395 GYIPESLCELLPN--SINFSNN 414
             +P      L     +  ++N
Sbjct: 215 -ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 325 IPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLN 384
           +P  I    +  +I L  N +S    +     + L +L L SN L      + + L  L 
Sbjct: 26  VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 385 VLDLSNNLLTGYIPESLCELLPN--SINFSNNRLS 417
            LDLS+N     +  +    L    +++     L 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 9   TLPD--FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIF 65
            LPD  F  + NL  L L  N  +   P   F  L +L+ L  ++N   ++  +   +  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN---RVAHVHPHAFR 198

Query: 66  RLTKLRIMVLATCALHGQIPASI-GNVTSLTDLELTGN 102
            L +L  + L    L   +P      + +L  L L  N
Sbjct: 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 96.7 bits (241), Expect = 3e-22
 Identities = 31/295 (10%), Positives = 72/295 (24%), Gaps = 86/295 (29%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
             G       ++ +D      VA+  +  Q         D LQ      +    L  I  
Sbjct: 38  FHGGVPPLQFWQALDTALDRQVALTFVDPQ----GVLPDDVLQE---TLSRTLRLSRIDK 90

Query: 592 KNIVKLY--------CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
             + ++                   +V E++  G+L +               +    +A
Sbjct: 91  PGVARVLDVVHTRAGGL--------VVAEWIRGGSLQEVADTSP---SPVGAIRAMQSLA 139

Query: 644 QGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
                 H  G    +       + + + ++    +A                        
Sbjct: 140 AAADAAHRAG----VALSIDHPSRVRVSIDGDVVLAYPA--------------------- 174

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG 762
              +         A  + D+   G  L  L+  R P+ +                     
Sbjct: 175 --TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEA----------------GVRS 209

Query: 763 IMEVLDKKLSG------SFRDEMIQVLR-IAIRCTSKSPATRPTMNEVVQLLAEA 810
            +   ++  +G          ++   +  +A R        R     ++ L+ +A
Sbjct: 210 GLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSAS-TLLNLMQQA 263

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 98.2 bits (245), Expect = 4e-22
 Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 39/235 (16%)

Query: 528 MTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           +++   +G G  G V+K  +  +G  +A K +           T  ++  + +K E+  +
Sbjct: 91  VSKTEILGGGRFGQVHKCEETATGLKLAAKII----------KTRGMKDKEEVKNEISVM 140

Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ-- 644
             + H N+++LY  F S    +LV EY+  G L+D +     +L   T       + Q  
Sbjct: 141 NQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNL---TELDTILFMKQIC 197

Query: 645 -GLAYLH-HGLLSPIIHRDIKSTNILL--DVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
            G+ ++H       I+H D+K  NIL       Q K+ DFG+A+  +          V  
Sbjct: 198 EGIRHMHQMY----ILHLDLKPENILCVNRDAKQIKIIDFGLARRYK----PREKLKVNF 249

Query: 701 GTYGYLAPE---YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
           GT  +LAPE   Y + S      D++S GV+   L++G  P    F GDN     
Sbjct: 250 GTPEFLAPEVVNYDFVSFP---TDMWSVGVIAYMLLSGLSP----FLGDNDAETL 297

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 97.8 bits (244), Expect = 4e-22
 Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 40/229 (17%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           ++++G+G +  VY+     + +  A+K L   +  V             ++TE+  L  +
Sbjct: 58  ESELGRGATSIVYRCKQKGTQKPYALKVL---KKTVDKKI---------VRTEIGVLLRL 105

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFGVAQ- 644
            H NI+KL   F   + +    LV E +  G L+D  + KG  +    +    A  V Q 
Sbjct: 106 SHPNIIKLKEIFETPTEIS---LVLELVTGGELFDRIVEKG--YY---SERDAADAVKQI 157

Query: 645 --GLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTV 698
              +AYLH +G    I+HRD+K  N+L      +   K+ADFG++K+++           
Sbjct: 158 LEAVAYLHENG----IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE----HQVLMKT 209

Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK 747
           + GT GY APE         + D++S G++   L+ G +P  D+ GD  
Sbjct: 210 VCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQF 258

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.1 bits (247), Expect = 4e-22
 Identities = 51/263 (19%), Positives = 85/263 (32%), Gaps = 33/263 (12%)

Query: 132 TIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTL 191
            +P+ +   T    L++  N +      S   L  L +LQL  N +             L
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 192 TMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSG 251
             L L+DN LT          S L  L L  N +                          
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI------------------------ES 150

Query: 252 VLPDSLARCKNLLRFRVS-NNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTVGNAR 309
           +   +  R  +L R  +     L   I EG    L ++  ++L+  +        +    
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLI 207

Query: 310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSG-IGNLKKLNLLMLQSNK 368
            L EL +  N +S   P      + L K+ +  + +   I      NL+ L  + L  N 
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNN 266

Query: 369 LNSSIPNSLSSLKSLNVLDLSNN 391
           L     +  + L  L  + L +N
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.7 bits (246), Expect = 6e-22
 Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 23/254 (9%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKL 70
            F  +++L  L LS N       +  F  L NL  L   +N   +L  +P  +   L+KL
Sbjct: 83  SFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN---RLTTIPNGAFVYLSKL 138

Query: 71  RIMVLATCALHGQIPASI-GNVTSLTDLELTG-NFITGHIPPEI-GLLKNLRQLELYYNQ 127
           + + L    +   IP+     + SL  L+L     ++ +I       L NLR L L    
Sbjct: 139 KELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCN 196

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIA 186
            L   IP  L  L +L +LD+S NHLS  I     + L  L+ L +  + +     +   
Sbjct: 197 -LR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 187 NSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQ 246
           N  +L  ++L  N+LT            L  + L  N    P     C+   + +     
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN----PW---NCNC-DILWLSWWI 304

Query: 247 NMFSGVLPDSLARC 260
              +       ARC
Sbjct: 305 KDMAPSNTACCARC 318

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.3 bits (245), Expect = 8e-22
 Identities = 61/278 (21%), Positives = 108/278 (38%), Gaps = 37/278 (13%)

Query: 142 ELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSL 201
           + + +     +L  ++P+ I      R+L L+ N +     +   +   L +L L  N +
Sbjct: 44  QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 202 TGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCK 261
                      + L  L+L +N+L+  +P                  F   L        
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTT-IPN---------------GAFVY-LS------- 136

Query: 262 NLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLS-YNSFSGPIANTVGNARNLSELFMQRN 319
            L    + NN +E SIP    + +P +  +DL      S           NL  L +   
Sbjct: 137 KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 320 QISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLS 378
            +   IP+ +   I L ++DLS N LS  I  G    L  L  L +  +++     N+  
Sbjct: 196 NLR-EIPN-LTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 379 SLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNN 414
           +L+SL  ++L++N LT  +P  L   L +   I+  +N
Sbjct: 253 NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.0 bits (239), Expect = 5e-21
 Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 11/212 (5%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
           N R L+L  N        S  +L +LE+L  + N    +  +   +   L  L  + L  
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN---HIRTIEIGAFNGLANLNTLELFD 121

Query: 78  CALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPE 135
             L   IP      ++ L +L L  N I   IP      + +LR+L+L   ++L+  I E
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISE 178

Query: 136 E-LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTML 194
                L+ L  L++++ +L  +IP ++  L KL  L L  N LS            L  L
Sbjct: 179 GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
            +  + +             LV ++L+ N L+
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRL 67
            +P+ +P+  L  LDLS N  +       F  L +L+ L   ++   ++  +  ++   L
Sbjct: 199 EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQS---QIQVIERNAFDNL 254

Query: 68  TKLRIMVLATCALHGQIPASI-GNVTSLTDLELTGN 102
             L  + LA   L   +P  +   +  L  + L  N
Sbjct: 255 QSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 95.7 bits (239), Expect = 7e-22
 Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 34/215 (15%)

Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK-GLKT----EVETL 586
            K+G+G  G VYK   N GE  A+KK+             +L+ +  G+ +    E+  L
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKI-------------RLEKEDEGIPSTTIREISIL 54

Query: 587 GNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
             ++H NIVKLY        L    LV+E++   +L   L      L+  T       + 
Sbjct: 55  KELKHSNIVKLYDVIHTKKRLV---LVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLL 110

Query: 644 QGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
            G+AY H       ++HRD+K  N+L++   + K+ADFG+A+       +  T  ++  T
Sbjct: 111 NGIAYCHDRR----VLHRDLKPQNLLINREGELKIADFGLARAFGIP-VRKYTHEIV--T 163

Query: 703 YGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
             Y AP+    SK  +T  D++S G +  E++ G 
Sbjct: 164 LWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGT 198

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 95.7 bits (239), Expect = 1e-21
 Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 35/218 (16%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT----EVETL 586
            K+G G   TVYK ++  +G  VA+K++             +L  ++G  +    E+  +
Sbjct: 11  EKLGNGTYATVYKGLNKTTGVYVALKEV-------------KLDSEEGTPSTAIREISLM 57

Query: 587 GNIRHKNIVKLYCYF---SSLYCNLLVYEYMPN--GNLWDALHKGLVHLDWPTRH--KIA 639
             ++H+NIV+LY      + L    LV+E+M N      D+   G               
Sbjct: 58  KELKHENIVRLYDVIHTENKLT---LVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQ 114

Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
           + + QGLA+ H      I+HRD+K  N+L++   Q K+ DFG+A+          ++ V+
Sbjct: 115 WQLLQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARAFGIP-VNTFSSEVV 170

Query: 700 AGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
             T  Y AP+    S+  +T  D++S G +L E+ITG+
Sbjct: 171 --TLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGK 206

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 61/231 (26%), Positives = 98/231 (42%), Gaps = 33/231 (14%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G    V  + +  +G+V A+K + ++   +   +          + E + L N   +
Sbjct: 69  IGRGAFSEVAVVKMKQTGQVYAMKIM-NKWDMLKRGEVSCF------REERDVLVNGDRR 121

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP-TRHKIAFGVAQGLAY 648
            I +L+  F   + LY   LV EY   G+L   L K    +     R  +A  +   +  
Sbjct: 122 WITQLHFAFQDENYLY---LVMEYYVGGDLLTLLSKFGERIPAEMARFYLA-EIVMAIDS 177

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           +H  G     +HRDIK  NILLD     ++ADFG    L+A G   S   V  GT  YL+
Sbjct: 178 VHRLG----YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAV--GTPDYLS 231

Query: 708 PE-------YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
           PE          +     +CD ++ GV   E+  G+ P    + D+    Y
Sbjct: 232 PEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPF---YADSTAETY 279

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 43/222 (19%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G  G      D  + E+VAVK +  +R            +D+ ++ E+    ++RH N
Sbjct: 29  GSGNFGVARLMRDKLTKELVAVKYI--ERGAA---------IDENVQREIINHRSLRHPN 77

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTR--HKIAFGVAQGLA 647
           IV+      +   L    ++ EY   G L++ + + G    D       ++  GV    +
Sbjct: 78  IVRFKEVILTPTHLA---IIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGV----S 130

Query: 648 YLH-HGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           Y H       I HRD+K  N LLD +  P  K+ DFG +K       +  +T    GT  
Sbjct: 131 YCHSMQ----ICHRDLKLENTLLDGSPAPRLKICDFGYSK-SSVLHSQPKST---VGTPA 182

Query: 705 YLAPE----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           Y+APE      Y  K     DV+S GV L  ++ G  P ED 
Sbjct: 183 YIAPEVLLRQEYDGK---IADVWSCGVTLYVMLVGAYPFEDP 221

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 45/251 (17%)

Query: 515 HRISFDQREILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQL 573
             ++FD  EIL A      +G+G  G V  +  N + ++ A+K +     K    + +++
Sbjct: 10  EDVNFDHFEILRA------IGKGSFGKVCIVQKNDTKKMYAMKYM----NKQKCVERNEV 59

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
              + +  E++ +  + H  +V L+  F     ++   +V + +  G+L         HL
Sbjct: 60  ---RNVFKELQIMQGLEHPFLVNLWYSFQDEEDMF---MVVDLLLGGDL-------RYHL 106

Query: 631 DWPTR---HKIAFGVAQ---GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
                     +   + +    L YL        IIHRD+K  NILLD +    + DF IA
Sbjct: 107 QQNVHFKEETVKLFICELVMALDYLQNQR----IIHRDMKPDNILLDEHGHVHITDFNIA 162

Query: 684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVE 740
            +L     +++  T +AGT  Y+APE   S K    +   D +S GV   EL+ GR+P  
Sbjct: 163 AMLP----RETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYH 218

Query: 741 DDFGDNKNIIY 751
                +   I 
Sbjct: 219 IRSSTSSKEIV 229

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 97.5 bits (243), Expect = 3e-21
 Identities = 70/273 (25%), Positives = 110/273 (40%), Gaps = 46/273 (16%)

Query: 492 QRAITEPDETLSSSFFPYDVKSFHRISFDQREILEA--MTEKN----KV-GQGGSGTVYK 544
           Q  +      L  + F   + S + + F Q + LEA  M E      +V G+GG G V+ 
Sbjct: 144 QPLLRAVLAHLGQAPFQEFLDSLYFLRFLQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFA 203

Query: 545 IDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF-- 601
             +  +G++ A KKL     K            +G   E + L  +  + IV L   F  
Sbjct: 204 CQMKATGKLYACKKL---NKKRLKKRKGY----QGAMVEKKILAKVHSRFIVSLAYAFET 256

Query: 602 -SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG----------VAQGLAYLH 650
            + L    LV   M  G++         H+         F           +  GL +LH
Sbjct: 257 KTDLC---LVMTIMNGGDI-------RYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH 306

Query: 651 -HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE 709
                  II+RD+K  N+LLD +   +++D G+A   + + G+  T    AGT G++APE
Sbjct: 307 QRN----IIYRDLKPENVLLDDDGNVRISDLGLAV--ELKAGQTKTKG-YAGTPGFMAPE 359

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
                +     D ++ GV L E+I  R P    
Sbjct: 360 LLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR 392

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 94.5 bits (236), Expect = 3e-21
 Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 34/215 (15%)

Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK-GLKT----EVETL 586
            KVG+G  G VYK   + G +VA+K++             +L  +  G+ +    E+  L
Sbjct: 27  EKVGEGTYGVVYKAKDSQGRIVALKRI-------------RLDAEDEGIPSTAIREISLL 73

Query: 587 GNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
             + H NIV L         L    LV+E+M   +L   L +    L         + + 
Sbjct: 74  KELHHPNIVSLIDVIHSERCLT---LVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLL 129

Query: 644 QGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
           +G+A+ H H     I+HRD+K  N+L++ +   K+ADFG+A+       +  T  V+  T
Sbjct: 130 RGVAHCHQHR----ILHRDLKPQNLLINSDGALKLADFGLARAFGIP-VRSYTHEVV--T 182

Query: 703 YGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
             Y AP+    SK  +T  D++S G +  E+ITG+
Sbjct: 183 LWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGK 217

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 96.4 bits (240), Expect = 3e-21
 Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 35/231 (15%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V  + L N+ +V A+K L ++   +  ++T         + E + L N   K
Sbjct: 82  IGRGAFGEVAVVKLKNADKVFAMKIL-NKWEMLKRAETACF------REERDVLVNGDSK 134

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GL 646
            I  L+  F   ++LY   LV +Y   G+L   L K    L         F +A+    +
Sbjct: 135 WITTLHYAFQDDNNLY---LVMDYYVGGDLLTLLSKFEDRLP---EEMARFYLAEMVIAI 188

Query: 647 AYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
             +H        +HRDIK  NIL+D+N   ++ADFG    L   G   S+  V  GT  Y
Sbjct: 189 DSVHQLH----YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAV--GTPDY 242

Query: 706 LAPE-----YAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
           ++PE          +   +CD +S GV + E++ G  P    + ++    Y
Sbjct: 243 ISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPF---YAESLVETY 290

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 96.8 bits (241), Expect = 3e-21
 Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 35/219 (15%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G G  G V       +G  VAVK L   R K+ + D     +   ++ E++ L   RH +
Sbjct: 25  GVGTFGKVKVGKHELTGHKVAVKIL--NRQKIRSLD-----VVGKIRREIQNLKLFRHPH 77

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHK---IAFGVAQGL 646
           I+KLY   S+   ++   +V EY+  G L+D +   G +     +R     I  GV    
Sbjct: 78  IIKLYQVISTPSDIF---MVMEYVSGGELFDYICKNGRLDEK-ESRRLFQQILSGVD--- 130

Query: 647 AYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
            Y H H     ++HRD+K  N+LLD +   K+ADFG++  + + G    T+    G+  Y
Sbjct: 131 -YCHRHM----VVHRDLKPENVLLDAHMNAKIADFGLSN-MMSDGEFLRTS---CGSPNY 181

Query: 706 LAPEYAYSSK--ATTKCDVYSFGVVLMELITGRKPVEDD 742
            APE   S +  A  + D++S GV+L  L+ G  P +DD
Sbjct: 182 AAPE-VISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD 219

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 94.7 bits (236), Expect = 4e-21
 Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 58/285 (20%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN 593
           G+G  G V       + + VA+K +   R  +  SD     +   ++ E+  L  +RH +
Sbjct: 18  GEGSFGKVKLATHYKTQQKVALKFI--SRQLLKKSD-----MHMRVEREISYLKLLRHPH 70

Query: 594 IVKLYCYFSS---LYCNLLVYEYMPNGNLWDAL-HKGLVHLDWPTRHKIAFGVAQGLAYL 649
           I+KLY   ++   +    +V EY   G L+D +  K    +      +    +   + Y 
Sbjct: 71  IIKLYDVITTPTDIV---MVIEYA-GGELFDYIVEKK--RMTEDEGRRFFQQIICAIEYC 124

Query: 650 H-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           H H     I+HRD+K  N+LLD N   K+ADFG++  +   G    T+    G+  Y AP
Sbjct: 125 HRHK----IVHRDLKPENLLLDDNLNVKIADFGLSN-IMTDGNFLKTS---CGSPNYAAP 176

Query: 709 EYAYSSK--ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV 766
           E   + K  A  + DV+S G+VL  ++ GR P +D                   E I  +
Sbjct: 177 E-VINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDD-------------------EFIPNL 216

Query: 767 LDKKLSGSFR------DEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             K  S  +            ++R   R     P  R T+ E+ +
Sbjct: 217 FKKVNSCVYVMPDFLSPGAQSLIR---RMIVADPMQRITIQEIRR 258

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 35/219 (15%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG-N 588
           K  +G G +G V +     +G+  A+K L          D+         + EV+     
Sbjct: 34  KQVLGLGVNGKVLECFHRRTGQKCALKLL---------YDS------PKARQEVDHHWQA 78

Query: 589 IRHKNIVKLYCYFSSLY----CNLLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFGVA 643
               +IV +   + +++    C L++ E M  G L+     +G          +I   + 
Sbjct: 79  SGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIG 138

Query: 644 QGLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
             + +LH H     I HRD+K  N+L    + +   K+ DFG AK          T    
Sbjct: 139 TAIQFLHSHN----IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETT--QNALQT---P 189

Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
             T  Y+APE     K    CD++S GV++  L+ G  P
Sbjct: 190 CYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPP 228

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 72/273 (26%), Positives = 110/273 (40%), Gaps = 40/273 (14%)

Query: 487 RRFSKQRAITEPDETLSSSFFP-YDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKI 545
           ++ S+Q ++ E        F   ++  S +    DQ + ++       +G G  G V  +
Sbjct: 7   KKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKT------LGTGSFGRVMLV 60

Query: 546 -DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF--- 601
               SG   A+K L     K       Q++       E   L  +    +VKL   F   
Sbjct: 61  KHKESGNHYAMKIL----DKQKVVKLKQIE---HTLNEKRILQAVNFPFLVKLEFSFKDN 113

Query: 602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPII 658
           S+LY   +V EY+  G ++  L +     +   R    F  AQ      YLH      +I
Sbjct: 114 SNLY---MVMEYVAGGEMFSHLRRIGRFSEPHAR----FYAAQIVLTFEYLHS---LDLI 163

Query: 659 HRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT 718
           +RD+K  N+L+D     +V DFG AK +     K  T T + GT   LAPE   S     
Sbjct: 164 YRDLKPENLLIDQQGYIQVTDFGFAKRV-----KGRTWT-LCGTPEALAPEIILSKGYNK 217

Query: 719 KCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             D ++ GV++ E+  G  P    F D    IY
Sbjct: 218 AVDWWALGVLIYEMAAGYPPF---FADQPIQIY 247

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 94.7 bits (236), Expect = 6e-21
 Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 44/242 (18%)

Query: 512 KSFHRIS-FDQR-EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSAS 568
             F+R        E+     +   VG G  G V   +D  +G  VA+KKL     +   S
Sbjct: 9   SGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKL----YRPFQS 64

Query: 569 DTDQLQLDKGLKTEVETLGNIRHKNIVKLY---------CYFSSLYCNLLVYEYMPNGNL 619
           +       K    E+  L ++RH+N++ L            F+  Y   LV  +M     
Sbjct: 65  ELFA----KRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFY---LVMPFM----- 112

Query: 620 WDA-LHKGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQP 675
               L K L+  +     +I F V Q   GL Y+H      IIHRD+K  N+ ++ + + 
Sbjct: 113 -GTDLGK-LMKHEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCEL 167

Query: 676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELIT 734
           K+ DFG+     AR      T  +  T  Y APE   +    T   D++S G ++ E+IT
Sbjct: 168 KILDFGL-----ARQADSEMTGYVV-TRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMIT 221

Query: 735 GR 736
           G+
Sbjct: 222 GK 223

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 95.2 bits (237), Expect = 6e-21
 Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 30/227 (13%)

Query: 534 VGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V  +   ++ +V A+K L S+   +  SD+           E + +      
Sbjct: 77  IGRGAFGEVQLVRHKSTRKVYAMKLL-SKFEMIKRSDSAFF------WEERDIMAFANSP 129

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
            +V+L+  F     LY   +V EYMP G+L + +    V   W  R   A  V   L  +
Sbjct: 130 WVVQLFYAFQDDRYLY---MVMEYMPGGDLVNLMSNYDVPEKW-ARFYTA-EVVLALDAI 184

Query: 650 H-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           H  G     IHRD+K  N+LLD +   K+ADFG    +   G     T V  GT  Y++P
Sbjct: 185 HSMG----FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAV--GTPDYISP 238

Query: 709 EYAYSSKATTK----CDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
           E   S          CD +S GV L E++ G  P    + D+    Y
Sbjct: 239 EVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPF---YADSLVGTY 282

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 94.3 bits (235), Expect = 7e-21
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 43/241 (17%)

Query: 512 KSFHRIS-FDQR-EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSAS 568
           K F++        E+ +       VG G  G+V   ID  SGE VA+KKL    ++   S
Sbjct: 8   KGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKL----SRPFQS 63

Query: 569 DTDQLQLDKGLKTEVETLGNIRHKNIVKLY---------CYFSSLYCNLLVYEYMPNGNL 619
           +       K    E+  L +++H+N++ L            F   Y   LV  +M   +L
Sbjct: 64  EIFA----KRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFY---LVMPFMQT-DL 115

Query: 620 WDALHKGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPK 676
              +          +  KI + V Q   GL Y+H      ++HRD+K  N+ ++ + + K
Sbjct: 116 QKIMGLKF------SEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELK 166

Query: 677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITG 735
           + DFG+     AR      T  +  T  Y APE   S        D++S G ++ E++TG
Sbjct: 167 ILDFGL-----ARHADAEMTGYVV-TRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTG 220

Query: 736 R 736
           +
Sbjct: 221 K 221

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 94.8 bits (236), Expect = 7e-21
 Identities = 62/258 (24%), Positives = 96/258 (37%), Gaps = 78/258 (30%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           +    +G G  G V +  D+ SG+  A+KK+              LQ  +    E++ + 
Sbjct: 10  SLGKTLGTGSFGIVCEVFDIESGKRFALKKV--------------LQDPRYKNRELDIMK 55

Query: 588 NIRHKNIVKLYCYFSS---------------------------------------LYCNL 608
            + H NI+KL  YF +                                        Y N+
Sbjct: 56  VLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNV 115

Query: 609 LVYEYMPNGNLWDALHKGLVHLDW-----PTRHK--IAFGVAQGLAYLH-HGLLSPIIHR 660
            + EY+P     D LHK L          P        + + + + ++H  G    I HR
Sbjct: 116 -IMEYVP-----DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLG----ICHR 165

Query: 661 DIKSTNILLDVN-YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TT 718
           DIK  N+L++      K+ DFG AK L     + S   +   +  Y APE    +   T 
Sbjct: 166 DIKPQNLLVNSKDNTLKLCDFGSAKKLIP--SEPSVAYIC--SRFYRAPELMLGATEYTP 221

Query: 719 KCDVYSFGVVLMELITGR 736
             D++S G V  ELI G+
Sbjct: 222 SIDLWSIGCVFGELILGK 239

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 93.9 bits (234), Expect = 8e-21
 Identities = 53/240 (22%), Positives = 87/240 (36%), Gaps = 29/240 (12%)

Query: 512 KSFHRISFDQR--EILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASD 569
                         +    T +  +  G  G V     + G  VA+K++++  +     +
Sbjct: 6   GEAAMRDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVN 65

Query: 570 TDQLQLD-KGLKTEVETLGNIRHKNIVKLY--------CYFSSLYCNLLVYEYMPNGNLW 620
                   K +  E+  L +  H NI+ L              LY   LV E M   +L 
Sbjct: 66  ILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLY---LVTELMRT-DLA 121

Query: 621 DALHKGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV 677
             +H   + +   +   I + +     GL  LH      ++HRD+   NILL  N    +
Sbjct: 122 QVIHDQRIVI---SPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLADNNDITI 175

Query: 678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
            DF +A+   A    D+  T       Y APE     K  T   D++S G V+ E+   +
Sbjct: 176 CDFNLAREDTA----DANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRK 231

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 41/221 (18%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK-GL-KT---EVET 585
            K+G+G  G VYK ID  + E VA+K++             +L+ ++ G+  T   EV  
Sbjct: 40  TKLGEGTYGEVYKAIDTVTNETVAIKRI-------------RLEHEEEGVPGTAIREVSL 86

Query: 586 LGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
           L  ++H+NI++L         L+   L++EY  N +L   + K    +         + +
Sbjct: 87  LKELQHRNIIELKSVIHHNHRLH---LIFEYAEN-DLKKYMDKN-PDVSMRVIKSFLYQL 141

Query: 643 AQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQP-----KVADFGIAKVLQARGGKDSTT 696
             G+ + H        +HRD+K  N+LL V+        K+ DFG+A+       +  T 
Sbjct: 142 INGVNFCHSRR----CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIP-IRQFTH 196

Query: 697 TVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
            +I  T  Y  PE    S+  +T  D++S   +  E++   
Sbjct: 197 EII--TLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT 235

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 65/274 (23%), Positives = 107/274 (39%), Gaps = 31/274 (11%)

Query: 492 QRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNK--------VGQGGSGTVY 543
           Q  I E  + L    F   ++S     F Q + +E               +G+GG G VY
Sbjct: 147 QPYIEEICQNLRGDVFQKFIESDKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGFGEVY 206

Query: 544 KIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF- 601
                ++G++ A+K L  +R K          L    +  +  +       IV +   F 
Sbjct: 207 GCRKADTGKMYAMKCLDKKRIK----MKQGETLALNERIMLSLVSTGDCPFIVCMSYAFH 262

Query: 602 --SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH-HGLLSPII 658
               L     + + M  G+L   L +  V  +   R   A  +  GL ++H       ++
Sbjct: 263 TPDKLS---FILDLMNGGDLHYHLSQHGVFSEADMRFYAA-EIILGLEHMHNRF----VV 314

Query: 659 HRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT 718
           +RD+K  NILLD +   +++D G+A        K        GT+GY+APE      A  
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLAC----DFSKKKPHA-SVGTHGYMAPEVLQKGVAYD 369

Query: 719 KC-DVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
              D +S G +L +L+ G  P       +K+ I 
Sbjct: 370 SSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEID 403

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 90.6 bits (225), Expect = 4e-20
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 16/186 (8%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
           +   L LS NL    F L+     T L  L+ +     +L KL       L  L  + L+
Sbjct: 32  DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRA---ELTKLQVDG--TLPVLGTLDLS 85

Query: 77  TCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPE 135
              L   +P     + +LT L+++ N +T  +P      L  L++L L  N +L  T+P 
Sbjct: 86  HNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN-ELK-TLPP 141

Query: 136 EL-GNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTM 193
            L     +L  L ++ N+L+ ++P  +L  L  L  L L  NSL   I      S  L  
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPF 199

Query: 194 LSLYDN 199
             L+ N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 9e-17
 Identities = 49/215 (22%), Positives = 71/215 (33%), Gaps = 37/215 (17%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL 143
           +P  +      T L L+ N +       +     L QL L   +    T  +  G L  L
Sbjct: 25  LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVL 79

Query: 144 TDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT- 202
             LD+S N L   +P     LP L VL +  N L+      +     L  L L  N L  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 203 --GEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARC 260
               +     +   L  L L+ N L+  LPA                +      + L   
Sbjct: 139 LPPGLLTPTPK---LEKLSLANNNLTE-LPA---------------GLL-----NGLE-- 172

Query: 261 KNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYN 295
            NL    +  N L  +IP+G      +    L  N
Sbjct: 173 -NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 42/169 (24%), Positives = 56/169 (33%), Gaps = 34/169 (20%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
            L     +  L  LDLS+N      PL    L  L VL  + N   +L  LP     R  
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN---RLTSLPL-GALR-- 121

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQ 127
                                 +  L +L L GN +   +PP +      L +L L  N 
Sbjct: 122 ---------------------GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN- 158

Query: 128 QLAGTIPEEL-GNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN 175
            L   +P  L   L  L  L +  N L   IP+       L    L+ N
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 52/258 (20%), Positives = 79/258 (30%), Gaps = 82/258 (31%)

Query: 139 NLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYD 198
            +    +++    +L+  +P  +       +L L  N L     + +   T LT L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 199 NSLTG-EVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSL 257
             LT  +V   L     L  LDLS N+L                           LP   
Sbjct: 65  AELTKLQVDGTLPV---LGTLDLSHNQLQ-------------------------SLPLLG 96

Query: 258 ARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQ 317
                L    VS N L  S+P G                  G           L EL+++
Sbjct: 97  QTLPALTVLDVSFNRLT-SLPLGA---------------LRGL--------GELQELYLK 132

Query: 318 RNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNS 376
            N++                           +P G+     KL  L L +N L       
Sbjct: 133 GNELKT-------------------------LPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 377 LSSLKSLNVLDLSNNLLT 394
           L+ L++L+ L L  N L 
Sbjct: 168 LNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 269 SNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSE 328
              +L  ++P  +      +I+ LS N        T+     L++L + R +++      
Sbjct: 18  DKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QV 72

Query: 329 IYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDL 388
                 L  +DLS N L   +P     L  L +L +  N+L S    +L  L  L  L L
Sbjct: 73  DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 389 SNNLLTGYIPESLCELLPN--SINFSNNRLS 417
             N L   +P  L    P    ++ +NN L+
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 91.1 bits (227), Expect = 4e-20
 Identities = 56/228 (24%), Positives = 88/228 (38%), Gaps = 49/228 (21%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV------- 583
            ++G G  GTVYK  D +SG  VA+K +             ++    G    +       
Sbjct: 15  AEIGVGAYGTVYKARDPHSGHFVALKSV-------------RVPNGGGGGGGLPISTVRE 61

Query: 584 ----ETLGNIRHKNIVKLY--------CYFSSLYCNLLVYEYMPN--GNLWDALHKGLVH 629
                 L    H N+V+L              +    LV+E++        D        
Sbjct: 62  VALLRRLEAFEHPNVVRLMDVCATSRTDREIKVT---LVFEHVDQDLRTYLD--KAPPPG 116

Query: 630 LDWPTRHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA 688
           L   T   +     +GL +LH +     I+HRD+K  NIL+      K+ADFG+A++   
Sbjct: 117 LPAETIKDLMRQFLRGLDFLHANC----IVHRDLKPENILVTSGGTVKLADFGLARIYSY 172

Query: 689 RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           +     T  V+  T  Y APE    S   T  D++S G +  E+   +
Sbjct: 173 Q--MALTPVVV--TLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 216

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 94.1 bits (234), Expect = 4e-20
 Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 31/264 (11%)

Query: 492 QRAITEPDETLSSSFFPYDVKSFHRISFDQREILEA--MTEKN----KV-GQGGSGTVYK 544
           Q       E LS + F   + S +   F Q + LE   +T+      +V G+GG G V  
Sbjct: 143 QELTRLTHEYLSVAPFADYLDSIYFNRFLQWKWLERQPVTKNTFRQYRVLGKGGFGEVCA 202

Query: 545 IDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS 603
             +  +G++ A KKL     K       +         E + L  +  + +V L   + +
Sbjct: 203 CQVRATGKMYACKKL---EKKRIKKRKGE----AMALNEKQILEKVNSRFVVSLAYAYET 255

Query: 604 ---LYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFGVAQGLAYLH-HGLLSPII 658
              L    LV   M  G+L   ++  G            A  +  GL  LH       I+
Sbjct: 256 KDALC---LVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRER----IV 308

Query: 659 HRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT 718
           +RD+K  NILLD +   +++D G+A  +     +  T     GT GY+APE   + + T 
Sbjct: 309 YRDLKPENILLDDHGHIRISDLGLAVHV----PEGQTIKGRVGTVGYMAPEVVKNERYTF 364

Query: 719 KCDVYSFGVVLMELITGRKPVEDD 742
             D ++ G +L E+I G+ P +  
Sbjct: 365 SPDWWALGCLLYEMIAGQSPFQQR 388

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 91.6 bits (228), Expect = 6e-20
 Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 34/227 (14%)

Query: 523 EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           ++    T  + +G+G  G V    D  +   VA+KK+     +            +    
Sbjct: 24  DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYC---------QRTLR 74

Query: 582 EVETLGNIRHKNIVKLY--------CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
           E++ L   RH+NI+ +              +Y   +V + M      D L+K L+     
Sbjct: 75  EIKILLRFRHENIIGINDIIRAPTIEQMKDVY---IVQDLMET----D-LYK-LLKTQHL 125

Query: 634 TRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
           +   I + + Q   GL Y+H      ++HRD+K +N+LL+     K+ DFG+A+V     
Sbjct: 126 SNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH 182

Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
                 T    T  Y APE   +SK  T   D++S G +L E+++ R
Sbjct: 183 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 229

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 91.0 bits (226), Expect = 1e-19
 Identities = 60/262 (22%), Positives = 107/262 (40%), Gaps = 49/262 (18%)

Query: 530 EKNKVGQGGSGTVYK---IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           E  KVG+G  G VYK    D    +  A+K++      +SA              E+  L
Sbjct: 25  EGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSAC------------REIALL 72

Query: 587 GNIRHKNIVKLYCYF-----SSLYCNLLVYEYMP-------NGNLWDALHKGLVHLDWPT 634
             ++H N++ L   F       ++   L+++Y           +     +K  V L    
Sbjct: 73  RELKHPNVISLQKVFLSHADRKVW---LLFDYAEHDLWHIIKFHRASKANKKPVQLPRGM 129

Query: 635 RHKIAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQP----KVADFGIAKVLQA- 688
              + + +  G+ YLH +     ++HRD+K  NIL+          K+AD G A++  + 
Sbjct: 130 VKSLLYQILDGIHYLHANW----VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSP 185

Query: 689 -RGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDF-GD 745
            +   D    V+  T+ Y APE    ++  T   D+++ G +  EL+T  +P+   F   
Sbjct: 186 LKPLADLDPVVV--TFWYRAPELLLGARHYTKAIDIWAIGCIFAELLT-SEPI---FHCR 239

Query: 746 NKNIIYWVSIKVDTKEGIMEVL 767
            ++I        D  + I  V+
Sbjct: 240 QEDIKTSNPYHHDQLDRIFNVM 261

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 65/263 (24%), Positives = 106/263 (40%), Gaps = 25/263 (9%)

Query: 492 QRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKV-GQGGSGTVYKIDL-NS 549
            R+ +  D + +        K  HR++ ++ E L       K+ G+G  G V  +    +
Sbjct: 120 FRSGSPSDNSGAEEMEVSLAKPKHRVTMNEFEYL-------KLLGKGTFGKVILVKEKAT 172

Query: 550 GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL 609
           G   A+K L  +   V+  +           TE   L N RH  +  L   F +      
Sbjct: 173 GRYYAMKIL-KKEVIVAKDEVAHT------LTENRVLQNSRHPFLTALKYSFQTHDRLCF 225

Query: 610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL 669
           V EY   G L+  L +  V  +   R   A  +   L YLH      +++RD+K  N++L
Sbjct: 226 VMEYANGGELFFHLSRERVFSEDRARFYGA-EIVSALDYLHSEK--NVVYRDLKLENLML 282

Query: 670 DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVL 729
           D +   K+ DFG+ K         +T     GT  YLAPE    +      D +  GVV+
Sbjct: 283 DKDGHIKITDFGLCK---EGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 339

Query: 730 MELITGRKPVEDDFGDNKNIIYW 752
            E++ GR P    +  +   ++ 
Sbjct: 340 YEMMCGRLPF---YNQDHEKLFE 359

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 16  MQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVL 75
           M +L  + L+N   T    +      N++ L+ N            + I  L+ L  + +
Sbjct: 43  MNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATNY-----NPISGLSNLERLRI 95

Query: 76  ATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPE 135
               +      ++  +TSLT L+++ +     I  +I  L  +  ++L YN  +  T   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI--TDIM 153

Query: 136 ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
            L  L EL  L++  + +       I   PKL  L  ++ ++ G+
Sbjct: 154 PLKTLPELKSLNIQFDGVH-DY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 5e-16
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 87  SIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDL 146
           +   + SLT + L    +T  +   I    N++ L +        T    +  L+ L  L
Sbjct: 39  TEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIH---ATNYNPISGLSNLERL 93

Query: 147 DMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVP 206
            +    ++     ++  L  L +L + +++    I + I     +  + L  N    ++ 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152

Query: 207 QDLGQWSPLVVLDLSENKLS 226
             L     L  L++  + + 
Sbjct: 153 MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 28/165 (16%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 261 KNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQ 320
           K  L   +  +         + SL ++++ +++    +G     +  A N+ +L +    
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIH 77

Query: 321 ISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSL 380
            + +  + I    +L ++ +    ++      +  L  L LL +  +  + SI   +++L
Sbjct: 78  ATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 381 KSLNVLDLSNNLLTGYIP--ESLCELLPNSINFSNNRLSGPIPLS 423
             +N +DLS N     I   ++L EL   S+N   + +     + 
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKTLPEL--KSLNIQFDGVHDYRGIE 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 31/239 (12%), Positives = 76/239 (31%), Gaps = 60/239 (25%)

Query: 157 IPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLV 216
           IP+S  +        L  +S +  I+   A   +LT ++L + ++T      +     + 
Sbjct: 17  IPDSTFK--AYLNGLLGQSSTA-NIT--EAQMNSLTYITLANINVTDLTG--IEYAHNIK 69

Query: 217 VLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGS 276
            L ++    +   P                          ++   NL R R+    +   
Sbjct: 70  DLTINNIHATNYNP--------------------------ISGLSNLERLRIMGKDVTSD 103

Query: 277 IPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLV 336
               +  L  ++++D+S+++    I   +     ++ + +  N                 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA--------------- 148

Query: 337 KIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG 395
              ++D          +  L +L  L +Q + ++      +     LN L   +  + G
Sbjct: 149 ---ITD-------IMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 30/118 (25%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           +P+ S + +L  LD+S++         +  L  +  +  + N               +T 
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-------------AITD 151

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
           +                 +  +  L  L +  + +  +    I     L QL  +   
Sbjct: 152 I---------------MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 16/196 (8%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKL 70
            F     L+ LDLS            + +L++L  L    N    +  L   +   L+ L
Sbjct: 47  SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN---PIQSLALGAFSGLSSL 102

Query: 71  RIMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQ 128
           + +V     L   +     G++ +L +L +  N I     PE    L NL  L+L  N +
Sbjct: 103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-K 160

Query: 129 LAGTIPEE----LGNLTELT-DLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS 183
           +  +I       L  +  L   LD+S+N ++  I     +  +L+ L L  N L      
Sbjct: 161 IQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDG 218

Query: 184 VIANSTTLTMLSLYDN 199
           +    T+L  + L+ N
Sbjct: 219 IFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.3 bits (217), Expect = 4e-19
 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 16/214 (7%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
           + + LDLS N          F +   L+VL  +     ++  + + +   L+ L  ++L 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILT 84

Query: 77  TCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIP 134
              +   +       ++SL  L      +   +     G LK L++L + +N   +  +P
Sbjct: 85  GNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 135 EELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRV----LQLYNNSLSGEISSVIANST 189
           E   NLT L  LD+S N +   I  + L  L ++ +    L L  N ++  I        
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN 223
            L  L+L  N L         + + L  + L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.5 bits (207), Expect = 9e-18
 Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEEL-GNLT 141
           IP ++    S  +L+L+ N +  H+          L+ L+L    ++  TI +    +L+
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-EIQ-TIEDGAYQSLS 76

Query: 142 ELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANS-TTLTMLSLYDN 199
            L+ L ++ N +   +       L  L+ L     +L+  + +       TL  L++  N
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134

Query: 200 SLTGEVPQD-----LGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYF---LVLQNMFS 250
            +            L     L  LDLS NK+   +         ++      L L     
Sbjct: 135 LIQ-SFKLPEYFSNLTN---LEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYN 295
             +     +   L    +  N L+ S+P+GI   L  +  I L  N
Sbjct: 190 NFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 45/212 (21%), Positives = 77/212 (36%), Gaps = 14/212 (6%)

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYFLVLQ- 246
            +   L L  N L          +  L VLDLS  ++   +          L   L+L  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLST-LILTG 85

Query: 247 NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSF-SGPIANT 304
           N    +   + +   +L +      +L  S+    +  L  +  +++++N   S  +   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 305 VGNARNLSELFMQRNQISGFIPSEIYRA-----ISLVKIDLSDNLLSGPIPSGIGNLKKL 359
             N  NL  L +  N+I   I     R      +  + +DLS N ++  I  G     +L
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRL 202

Query: 360 NLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN 391
             L L +N+L S        L SL  + L  N
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 55/266 (20%), Positives = 90/266 (33%), Gaps = 59/266 (22%)

Query: 108 IPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPK 166
           IP    L  + + L+L +N  L         +  EL  LD+S   +   I +     L  
Sbjct: 22  IPD--NLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 167 LRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN---SLTGEVPQDLGQWSPLVVLDLSEN 223
           L  L L  N +        +  ++L  L   +    SL       L     L  L+++ N
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT---LKELNVAHN 134

Query: 224 KLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL- 282
            +                   L   FS  L        NL    +S+N ++ SI    L 
Sbjct: 135 LIQ---------------SFKLPEYFSN-LT-------NLEHLDLSSNKIQ-SIYCTDLR 170

Query: 283 SLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSD 342
            L  + +++L                     L +  N ++ FI    ++ I L ++ L  
Sbjct: 171 VLHQMPLLNL--------------------SLDLSLNPMN-FIQPGAFKEIRLKELALDT 209

Query: 343 NLLSGPIPSGI-GNLKKLNLLMLQSN 367
           N L   +P GI   L  L  + L +N
Sbjct: 210 NQLKS-VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 10/147 (6%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIY-RAIS 334
            IP+ +        +DLS+N      + +  +   L  L + R +I   I    Y     
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 335 LVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSL-SSLKSLNVLDLSNNL 392
           L  + L+ N +   +  G    L  L  L+     L +S+ N     LK+L  L++++NL
Sbjct: 78  LSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNL 135

Query: 393 LTGYIPESLCELLPN--SINFSNNRLS 417
           +  +        L N   ++ S+N++ 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 12/184 (6%)

Query: 243 LVLQ-NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGP 300
           L L  N    +   S      L    +S   ++ +I +G    L H+S + L+ N     
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDN-LLSGPIPSGIGNLKKL 359
                    +L +L      ++      I    +L +++++ N + S  +P    NL  L
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 360 NLLMLQSNKLNSSIPN----SLSSLKSLNV-LDLSNNLLTGYIPESLCELLP-NSINFSN 413
             L L SNK+  SI       L  +  LN+ LDLS N +  +I     + +    +    
Sbjct: 152 EHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDT 209

Query: 414 NRLS 417
           N+L 
Sbjct: 210 NQLK 213

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 88.8 bits (221), Expect = 3e-19
 Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 42/233 (18%)

Query: 534 VGQGGSGTVY----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G+GG G V+        N+G++ A+K L   +  +   +          K E   L  +
Sbjct: 25  LGKGGYGKVFQVRKVTGANTGKIFAMKVL---KKAMIVRNAKDT---AHTKAERNILEEV 78

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR---HKIAFGVA 643
           +H  IV L   F     LY   L+ EY+  G L        + L+           F +A
Sbjct: 79  KHPFIVDLIYAFQTGGKLY---LILEYLSGGEL-------FMQLEREGIFMEDTACFYLA 128

Query: 644 Q---GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
           +    L +LH  G    II+RD+K  NI+L+     K+ DFG+ K         + T   
Sbjct: 129 EISMALGHLHQKG----IIYRDLKPENIMLNHQGHVKLTDFGLCKE---SIHDGTVTHTF 181

Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF-GDNKNIIY 751
            GT  Y+APE    S      D +S G ++ +++TG  P    F G+N+    
Sbjct: 182 CGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPP----FTGENRKKTI 230

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 48/247 (19%)

Query: 513 SFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTD 571
           S +   F   ++     +   +G GG+G V+  +D +  + VA+KK+       S     
Sbjct: 1   SMNIHGF---DLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKI-VLTDPQSVKHA- 55

Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLY-----------------CYFSSLYCNLLVYEYM 614
                  L+ E++ +  + H NIVK++                    +S+Y   +V EYM
Sbjct: 56  -------LR-EIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVY---IVQEYM 104

Query: 615 PNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLD- 670
                 D L   L        H     + Q   GL Y+H      ++HRD+K  N+ ++ 
Sbjct: 105 ET----D-LANVLEQGPLLEEH-ARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINT 155

Query: 671 VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVL 729
            +   K+ DFG+A+++          +    T  Y +P    S    T   D+++ G + 
Sbjct: 156 EDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIF 215

Query: 730 MELITGR 736
            E++TG+
Sbjct: 216 AEMLTGK 222

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 57/268 (21%), Positives = 99/268 (36%), Gaps = 51/268 (19%)

Query: 512 KSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDT 570
           ++ +        + +    K+ +G+G  G VY   D N+ + VA+KK+     ++     
Sbjct: 12  ENLYFQGIKNVHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKV----NRMFEDLI 67

Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLY--------CYFSSLYCNLLVYEYMPNGNLWDA 622
           D     K +  E+  L  ++   I++LY          F  LY   +V E        D 
Sbjct: 68  DC----KRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELY---IVLEIAD----SD- 115

Query: 623 LHKGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD 679
           L K      + T   I   +     G  ++H      IIHRD+K  N LL+ +   KV D
Sbjct: 116 LKKLFKTPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCD 172

Query: 680 FGIAKVLQARGGKDSTTTVIAGTYG-------------------YLAPEYAYSSKA-TTK 719
           FG+A+ + +    +    +                         Y APE     +  T  
Sbjct: 173 FGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKS 232

Query: 720 CDVYSFGVVLMELITGRKPVEDDFGDNK 747
            D++S G +  EL+   +   +D  +  
Sbjct: 233 IDIWSTGCIFAELLNMLQSHINDPTNRF 260

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 89.4 bits (222), Expect = 4e-19
 Identities = 58/242 (23%), Positives = 89/242 (36%), Gaps = 46/242 (19%)

Query: 535 GQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHK 592
           G G +G V +  +  + E  A+K L          D          + EVE      +  
Sbjct: 71  GLGINGKVLQIFNKRTQEKFALKML---------QDC------PKARREVELHWRASQCP 115

Query: 593 NIVKLYCYF----SSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFGVAQGLA 647
           +IV++   +    +   C L+V E +  G L+     +G          +I   + + + 
Sbjct: 116 HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 175

Query: 648 YLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
           YLH       I HRD+K  N+L      N   K+ DFG AK          TT     T 
Sbjct: 176 YLHSIN----IAHRDVKPENLLYTSKRPNAILKLTDFGFAKET--TSHNSLTTPC--YTP 227

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI 763
            Y+APE     K    CD++S GV++  L+ G  P    F  N          +    G+
Sbjct: 228 YYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPP----FYSNHG--------LAISPGM 275

Query: 764 ME 765
             
Sbjct: 276 KT 277

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 88.4 bits (220), Expect = 4e-19
 Identities = 70/255 (27%), Positives = 112/255 (43%), Gaps = 48/255 (18%)

Query: 512 KSFHRISFDQREILEAMTEKNKV-GQGGSGTVY----KIDLNSGEVVAVKKLWSQRTKVS 566
           +   +    Q E+L       KV GQG  G V+        ++ ++ A+K L     K +
Sbjct: 16  EGHEKADPSQFELL-------KVLGQGSFGKVFLVKKISGSDARQLYAMKVL----KKAT 64

Query: 567 ASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDAL 623
               D+++     K E + L  + H  IVKL+  F     LY   L+ +++  G+L+  L
Sbjct: 65  LKVRDRVRT----KMERDILVEVNHPFIVKLHYAFQTEGKLY---LILDFLRGGDLFTRL 117

Query: 624 HK-GLVHLDWPTRHKIAFGVAQ---GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVA 678
            K  +   +   +    F +A+    L +LH  G    II+RD+K  NILLD     K+ 
Sbjct: 118 SKEVMFTEED-VK----FYLAELALALDHLHSLG----IIYRDLKPENILLDEEGHIKLT 168

Query: 679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP 738
           DFG++K        +       GT  Y+APE       T   D +SFGV++ E++TG  P
Sbjct: 169 DFGLSKE---SIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLP 225

Query: 739 VEDDF-GDNKNIIYW 752
               F G ++     
Sbjct: 226 ----FQGKDRKETMT 236

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 88.1 bits (219), Expect = 5e-19
 Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 46/263 (17%)

Query: 487 RRFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-I 545
              S+ R  T+ +      ++ Y+    H + +      +      K+G+G    V++ I
Sbjct: 3   PVPSRARVYTDVNTHRPREYWDYES---HVVEW---GNQDDYQLVRKLGRGKYSEVFEAI 56

Query: 546 DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYF--S 602
           ++ + E V VK L             +    K +K E++ L N+R   NI+ L       
Sbjct: 57  NITNNEKVVVKIL-------------KPVKKKKIKREIKILENLRGGPNIITLADIVKDP 103

Query: 603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLAYLH-HGLLSPII 658
                 LV+E++ N +      +    L   T + I F + +    L Y H  G    I+
Sbjct: 104 VSRTPALVFEHVNNTDF----KQLYQTL---TDYDIRFYMYEILKALDYCHSMG----IM 152

Query: 659 HRDIKSTNILLDV-NYQPKVADFGIAKVLQARGGKDSTT-TVIAGTYGYLAPEYAYSSKA 716
           HRD+K  N+++D  + + ++ D+G+     A          V   +  +  PE     + 
Sbjct: 153 HRDVKPHNVMIDHEHRKLRLIDWGL-----AEFYHPGQEYNVRVASRYFKGPELLVDYQM 207

Query: 717 -TTKCDVYSFGVVLMELITGRKP 738
                D++S G +L  +I  ++P
Sbjct: 208 YDYSLDMWSLGCMLASMIFRKEP 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 54/305 (17%), Positives = 107/305 (35%), Gaps = 45/305 (14%)

Query: 90  NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMS 149
            + +   +    + +T         L  +  L  +       T  E +  L  L  L++ 
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 150 VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDL 209
            N ++      +  L K+  L+L  N L   +S+ IA   ++  L L    +T      L
Sbjct: 72  DNQITD--LAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD--VTPL 125

Query: 210 GQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVS 269
              S L VL L  N+++                              LA   NL    + 
Sbjct: 126 AGLSNLQVLYLDLNQITN--------------------------ISPLAGLTNLQYLSIG 159

Query: 270 NNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI 329
           N  +   +   + +L  ++ +    N  S    + + +  NL E+ ++ NQIS    S +
Sbjct: 160 NAQVS-DL-TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDV--SPL 213

Query: 330 YRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLS 389
               +L  + L++  ++        NL   N+  ++        P ++S   +    +L+
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV--VKGPSGAPIAPATISDNGTYASPNLT 271

Query: 390 NNLLT 394
            NL +
Sbjct: 272 WNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 43/258 (16%), Positives = 93/258 (36%), Gaps = 18/258 (6%)

Query: 137 LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSL 196
              L     +    ++++  + ++   L  +  L  +   ++  I   +     L  L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS 256
            DN +T      L   + +  L+LS N L       +     ++   +     + V    
Sbjct: 71  KDNQIT--DLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDV--TP 124

Query: 257 LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFM 316
           LA   NL    +  N +  +I   +  L ++  + +     S      + N   L+ L  
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 317 QRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNS 376
             N+IS    S +    +L+++ L +N +S    S + N   L ++ L +  + +     
Sbjct: 181 DDNKISDI--SPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFY 236

Query: 377 LSSLKSLNVLDLSNNLLT 394
            ++L   NV+   +    
Sbjct: 237 NNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 21/222 (9%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
           T+     + NL  L+L +N  T   PL   NLT +  L  + N    L  +  S+I  L 
Sbjct: 55  TIEGVQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGN---PLKNV--SAIAGLQ 107

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
            ++ + L +  +    P  +  +++L  L L  N IT +I P +  L NL+ L +   Q 
Sbjct: 108 SIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQV 163

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
              +    L NL++LT L    N +S  I   +  LP L  + L NN +S    S +AN+
Sbjct: 164 ---SDLTPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV--SPLANT 216

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLP 230
           + L +++L + ++T +        + LVV ++ +     P+ 
Sbjct: 217 SNLFIVTLTNQTITNQPVFYN---NNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 65/348 (18%), Positives = 121/348 (34%), Gaps = 79/348 (22%)

Query: 33  FPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVT 92
           FP     L N   ++  ++               +T                  +  ++ 
Sbjct: 13  FPDP--ALANAIKIAAGKS--------------NVTDT---------------VTQADLD 41

Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNH 152
            +T L   G  +T  I   +  L NL  LEL  NQ    T    L NLT++T+L++S N 
Sbjct: 42  GITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI---TDLAPLKNLTKITELELSGNP 96

Query: 153 LSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQW 212
           L  K   +I  L  ++ L L +  ++ +++  +A  + L +L L  N +T   P  L   
Sbjct: 97  L--KNVSAIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP--LAGL 150

Query: 213 SPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNH 272
           + L  L +   ++S                              LA    L   +  +N 
Sbjct: 151 TNLQYLSIGNAQVSD--------------------------LTPLANLSKLTTLKADDNK 184

Query: 273 LEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRA 332
           +   I   + SLP++  + L  N  S      + N  NL  + +    I+          
Sbjct: 185 IS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 333 ISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSL 380
           +         N++ GP  + I      +     S  L  ++ + ++++
Sbjct: 241 VVP-------NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNV 281

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 20/217 (9%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
               + +  +  L       T    +    L NL  L   +N   ++  L  + +  LTK
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDN---QITDL--APLKNLTK 86

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQL 129
           +  + L+   L  +  ++I  + S+  L+LT   IT  + P +  L NL+ L L  NQ  
Sbjct: 87  ITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQ-- 140

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
             T    L  LT L  L +    +S  +   +  L KL  L+  +N +S +IS  +A+  
Sbjct: 141 -ITNISPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKIS-DISP-LASLP 195

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
            L  + L +N ++   P  L   S L ++ L+   ++
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 63/308 (20%), Positives = 112/308 (36%), Gaps = 50/308 (16%)

Query: 16  MQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVL 75
           + N  ++    +  T     +  +L  +  LS                   +T +     
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGT--------------GVTTI----- 56

Query: 76  ATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPE 135
                       +  + +L  LEL  N IT  + P +  L  + +LEL  N         
Sbjct: 57  ----------EGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNP---LKNVS 101

Query: 136 ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLS 195
            +  L  +  LD++   ++   P  +  L  L+VL L  N ++  IS  +A  T L  LS
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLS 157

Query: 196 LYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD 255
           + +  ++   P  L   S L  L   +NK+S   P  + S   L    +  N  S V P 
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP- 212

Query: 256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIA-NTVGNARNLSEL 314
            LA   NL    ++N  +  + P  +    ++ + ++       PIA  T+ +    +  
Sbjct: 213 -LANTSNLFIVTLTNQTIT-NQP--VFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

Query: 315 FMQRNQIS 322
            +  N  S
Sbjct: 269 NLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 12/147 (8%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           +   + + NL+ L + N   +   PL+  NL+ L  L  ++N   K+  +  S +  L  
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDN---KISDI--SPLASLPN 196

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQL 129
           L  + L    +    P  + N ++L  + LT   IT      +    NL    +      
Sbjct: 197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPSG 251

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGK 156
           A   P  + +       +++ N  S  
Sbjct: 252 APIAPATISDNGTYASPNLTWNLTSFI 278

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 42/243 (17%)

Query: 510 DVKSFHRIS-FDQR-EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVS 566
           +  +F+R        E+ E     + VG G  G+V    D  +G  VAVKKL    ++  
Sbjct: 11  ERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKL----SRPF 66

Query: 567 ASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY---------CYFSSLYCNLLVYEYMPNG 617
            S        K    E+  L +++H+N++ L            F+ +Y   LV   M   
Sbjct: 67  QSIIHA----KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY---LVTHLMGA- 118

Query: 618 NLWDALHKGLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQ 674
              D L+  +        H + F + Q   GL Y+H      IIHRD+K +N+ ++ + +
Sbjct: 119 ---D-LNNIVKCQKLTDDH-VQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCE 170

Query: 675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELI 733
            K+ DFG+     AR   D  T  +A T  Y APE   +        D++S G ++ EL+
Sbjct: 171 LKILDFGL-----ARHTADEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL 224

Query: 734 TGR 736
           TGR
Sbjct: 225 TGR 227

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 86.5 bits (215), Expect = 2e-18
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 35/220 (15%)

Query: 532 NKVGQGGSGTVYK-IDL-NSGEVVAVKKLWSQRTK--VSASDTDQLQLDKGLKTEVETLG 587
            ++G+G  G V+K  DL N G  VA+K++  Q  +  +  S   ++ + + L+T      
Sbjct: 17  AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF----- 71

Query: 588 NIRHKNIVKLY--------CYFSSLYCNLLVYEYMPN--GNLWDALHKGLVHLDWPTRHK 637
              H N+V+L+           + L    LV+E++        D        +   T   
Sbjct: 72  --EHPNVVRLFDVCTVSRTDRETKLT---LVFEHVDQDLTTYLD--KVPEPGVPTETIKD 124

Query: 638 IAFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
           + F + +GL +LH H     ++HRD+K  NIL+  + Q K+ADFG+A++   +     T+
Sbjct: 125 MMFQLLRGLDFLHSHR----VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ--MALTS 178

Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
            V+  T  Y APE    S   T  D++S G +  E+   +
Sbjct: 179 VVV--TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRK 216

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 61/305 (20%), Positives = 100/305 (32%), Gaps = 66/305 (21%)

Query: 486 KRRFSKQRAITEPDETLSSSFFPYDVKSFHRIS--FDQREILEAMTEKNKVGQGGSGTVY 543
           +     Q  ++   +        +  K    +       +I +    ++ +G G  G V 
Sbjct: 11  QHNSGTQHTVSGSQQEGQQRKQHHSSKPTASMPRPHSDWQIPDRYEIRHLIGTGSYGHVC 70

Query: 544 K-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT---EVETLGNIRHKNIVKLY- 598
           +  D     VVA+KK+     +V     D        K    E+  L  + H ++VK+  
Sbjct: 71  EAYDKLEKRVVAIKKI----LRVFEDLID-------CKRILREIAILNRLNHDHVVKVLD 119

Query: 599 -------CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---GLAY 648
                    F  LY   +V E        D   K      + T   I   +     G+ Y
Sbjct: 120 IVIPKDVEKFDELY---VVLEIAD----SD-FKKLFRTPVYLTELHIKTLLYNLLVGVKY 171

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG--- 704
           +H  G    I+HRD+K  N L++ +   KV DFG+A+ +      +S   +         
Sbjct: 172 VHSAG----ILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNL 227

Query: 705 ---------------------YLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDD 742
                                Y APE     +  T   DV+S G +  EL+   K     
Sbjct: 228 VTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAY 287

Query: 743 FGDNK 747
             D  
Sbjct: 288 HADRG 292

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 86.5 bits (215), Expect = 3e-18
 Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 43/235 (18%)

Query: 523 EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
            I      K+ +G+G  G V       +GE+VA+KK+      + A              
Sbjct: 8   NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFA---------LRTLR 58

Query: 582 EVETLGNIRHKNIVKLY--------CYFSSLYCNLLVYEYMPNGNLWDA-LHKGLVHLDW 632
           E++ L + +H+NI+ ++          F+ +Y   ++ E M         LH+ +     
Sbjct: 59  EIKILKHFKHENIITIFNIQRPDSFENFNEVY---IIQELM------QTDLHRVISTQML 109

Query: 633 PTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR 689
              H I + + Q    +  LH      +IHRD+K +N+L++ N   KV DFG+A+++   
Sbjct: 110 SDDH-IQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIIDES 165

Query: 690 GGKDSTTTVIAG-------TYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGR 736
              +S  T           T  Y APE   +S   +   DV+S G +L EL   R
Sbjct: 166 AADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRR 220

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 85.3 bits (212), Expect = 4e-18
 Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 39/228 (17%)

Query: 534 VGQGGSGTVY---KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +G G  G V+        +G   A+K L     K       Q++       E   L  + 
Sbjct: 14  LGTGSFGRVHLIRSRH--NGRYYAMKVL----KKEIVVRLKQVE---HTNDERLMLSIVT 64

Query: 591 HKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ--- 644
           H  I++++  F     ++   ++ +Y+  G L+  L K     +   +    F  A+   
Sbjct: 65  HPFIIRMWGTFQDAQQIF---MIMDYIEGGELFSLLRKSQRFPNPVAK----FYAAEVCL 117

Query: 645 GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            L YLH       II+RD+K  NILLD N   K+ DFG AK +      D T T + GT 
Sbjct: 118 ALEYLHSKD----IIYRDLKPENILLDKNGHIKITDFGFAKYV-----PDVTYT-LCGTP 167

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
            Y+APE   +       D +SFG+++ E++ G  P    +  N    Y
Sbjct: 168 DYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPF---YDSNTMKTY 212

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.1 bits (215), Expect = 9e-18
 Identities = 52/328 (15%), Positives = 96/328 (29%), Gaps = 67/328 (20%)

Query: 90  NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMS 149
                    L    +T         L ++ Q+    +        + +  L  +T L ++
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD---IKSVQGIQYLPNVTKLFLN 73

Query: 150 VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDL 209
            N L+  I + +  L  L  L L  N +  ++SS + +   L  LSL  N ++      L
Sbjct: 74  GNKLT-DI-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS--DINGL 127

Query: 210 GQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVS 269
                L  L L  NK++                              L+R   L    + 
Sbjct: 128 VHLPQLESLYLGNNKITDI--------------------------TVLSRLTKLDTLSLE 161

Query: 270 NNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI 329
           +N +               I+ L+                 L  L++ +N IS      +
Sbjct: 162 DNQIS-------------DIVPLA-------------GLTKLQNLYLSKNHISDL--RAL 193

Query: 330 YRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLS 389
               +L  ++L          +   NL   N +      L +  P  +S        ++ 
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 251

Query: 390 NNLLTGYIPESLCELLPNSINFSNNRLS 417
            +L       S     P +I  +  R  
Sbjct: 252 WHLPEFTNEVSFIFYQPVTIGKAKARFH 279

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.6 bits (206), Expect = 8e-17
 Identities = 45/219 (20%), Positives = 82/219 (37%), Gaps = 18/219 (8%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
               + + ++ ++  +N+       +    L N+  L  N N   KL  +    +  L  
Sbjct: 36  AVTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGN---KLTDI--KPLTNLKN 88

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQL 129
           L  + L    +   +  S+ ++  L  L L  N I+  I   +  L  L  L L  N+  
Sbjct: 89  LGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNK-- 142

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
             T    L  LT+L  L +  N +S  I   +  L KL+ L L  N +S ++ + +A   
Sbjct: 143 -ITDITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLK 197

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGP 228
            L +L L+      +             +  ++  L  P
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.3 bits (200), Expect = 5e-16
 Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 42/217 (19%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           +          + +L     T     +   L +++ +  N +               +  
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNS--------------DIKS 57

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQL 129
           ++                I  + ++T L L GN +T  I P +  LKNL  L L  N+  
Sbjct: 58  VQ---------------GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKI- 99

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
                  L +L +L  L +  N +S  I   ++ LP+L  L L NN ++ +I+  ++  T
Sbjct: 100 --KDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLT 153

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
            L  LSL DN ++  VP  L   + L  L LS+N +S
Sbjct: 154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 28/211 (13%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNEN-----PGFK-LWKLPE- 61
           ++     + N+ +L L+ N  T   PL+  NL NL  L  +EN        K L KL   
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114

Query: 62  ----------SSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPE 111
                     + +  L +L  + L    +       +  +T L  L L  N I+  I P 
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP- 170

Query: 112 IGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ 171
           +  L  L+ L L  N     +    L  L  L  L++       K       L     ++
Sbjct: 171 LAGLTKLQNLYLSKNHI---SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLT 202
             + SL       I++       ++  +   
Sbjct: 228 NTDGSLVTPEI--ISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELF 315
           +     ++ +   +N+ ++ S+ +GI  LP+V+ + L+ N  +  I   + N +NL  LF
Sbjct: 38  TQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLF 93

Query: 316 MQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPN 375
           +  N+I      +  +   L  + L  N +S    +G+ +L +L  L L +NK+ + I  
Sbjct: 94  LDENKIKDLSSLKDLK--KLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKI-TDITV 148

Query: 376 SLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSG 435
            LS L  L+ L L +N ++  +P +    L  ++  S N +S    L+ +K   V     
Sbjct: 149 -LSRLTKLDTLSLEDNQISDIVPLAGLTKL-QNLYLSKNHISDLRALAGLKNLDVLELFS 206

Query: 436 NP 437
             
Sbjct: 207 QE 208

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 84.6 bits (210), Expect = 9e-18
 Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 40/236 (16%)

Query: 534 VGQGGSGTVY----KIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           +G G  G V+        ++G++ A+K L        A  T+        +TE + L +I
Sbjct: 62  LGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHT------RTERQVLEHI 115

Query: 590 RHKN-IVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR---HKIAFGV 642
           R    +V L+  F   + L+   L+ +Y+  G L         HL    R   H++   V
Sbjct: 116 RQSPFLVTLHYAFQTETKLH---LILDYINGGEL-------FTHLSQRERFTEHEVQIYV 165

Query: 643 AQ---GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
            +    L +LH  G    II+RDIK  NILLD N    + DFG++K  +    +      
Sbjct: 166 GEIVLALEHLHKLG----IIYRDIKLENILLDSNGHVVLTDFGLSK--EFVADETERAYD 219

Query: 699 IAGTYGYLAPE-YAYSSKATTK-CDVYSFGVVLMELITGRKP-VEDDFGDNKNIIY 751
             GT  Y+AP+          K  D +S GV++ EL+TG  P   D   +++  I 
Sbjct: 220 FCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEIS 275

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 84.2 bits (209), Expect = 1e-17
 Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 38/230 (16%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK 592
           +G+G  G V  +    +G   A+K L  +   ++  +           TE   L N RH 
Sbjct: 13  LGKGTFGKVILVREKATGRYYAMKIL-RKEVIIAKDEVAHT------VTESRVLQNTRHP 65

Query: 593 NIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTR---HKIAFGVAQ-- 644
            +  L   F     L     V EY   G L         HL         +  F  A+  
Sbjct: 66  FLTALKYAFQTHDRLC---FVMEYANGGEL-------FFHLSRERVFTEERARFYGAEIV 115

Query: 645 -GLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGT 702
             L YLH       +++RDIK  N++LD +   K+ DFG+ K         +T     GT
Sbjct: 116 SALEYLHSRD----VVYRDIKLENLMLDKDGHIKITDFGLCK---EGISDGATMKTFCGT 168

Query: 703 YGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
             YLAPE    +      D +  GVV+ E++ GR P    +  +   ++ 
Sbjct: 169 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPF---YNQDHERLFE 215

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 72/281 (25%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR- 590
           K+G G   TV+   D+ +   VA+K +   +    A+           + E++ L  +  
Sbjct: 26  KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAA-----------EDEIKLLQRVND 74

Query: 591 ----------HKNIVKLYCYFSSLYCNL------LVYEYMPNGNLWDAL----HKGLVHL 630
                       +I+KL  +F+  +         +V+E +   NL   +    H+G+   
Sbjct: 75  ADNTKEDSMGANHILKLLDHFN--HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGI--- 128

Query: 631 DWPTRH--KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP------KVADFGI 682
             P  +  +I+  +  GL Y+H      IIH DIK  N+L+++   P      K+AD G 
Sbjct: 129 --PLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLG- 183

Query: 683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRK--PVE 740
                A    +  T  I  T  Y +PE    +      D++S   ++ ELITG      +
Sbjct: 184 ----NACWYDEHYTNSIQ-TREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD 238

Query: 741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQ 781
           +     K+         D    I+E+L     G     +++
Sbjct: 239 EGHSYTKD--------DDHIAQIIELL-----GELPSYLLR 266

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 82.2 bits (203), Expect = 6e-17
 Identities = 49/303 (16%), Positives = 96/303 (31%), Gaps = 60/303 (19%)

Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNH 152
           S        + +T  IP    L +N  +L     + L            +L  +++S N 
Sbjct: 10  SNRVFLCQESKVT-EIPS--DLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQND 65

Query: 153 LSGKIPESILR-LPKLRVLQLYN-NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLG 210
           +   I   +   LPKL  +++   N+L         N   L  L + +  +   +P    
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 211 QWSP-LVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVS 269
             S   V+LD+ +N     +                 N F G+           +   ++
Sbjct: 125 IHSLQKVLLDIQDNINIHTIER---------------NSFVGL-------SFESVILWLN 162

Query: 270 NNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI 329
            N ++  I     +                         +         N +   +P+++
Sbjct: 163 KNGIQ-EIHNSAFNGT-----------------------QLDELNLSDNNNLE-ELPNDV 197

Query: 330 -YRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDL 388
            + A   V +D+S   +   +PS    L+ L  L  +S      +P +L  L +L    L
Sbjct: 198 FHGASGPVILDISRTRIH-SLPSYG--LENLKKLRARSTYNLKKLP-TLEKLVALMEASL 253

Query: 389 SNN 391
           +  
Sbjct: 254 TYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.7 bits (194), Expect = 8e-16
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 12/195 (6%)

Query: 12  DFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKL 70
            FS   +L ++++S N         VF NL  L  +   +     L  +   +   L  L
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN--NLLYINPEAFQNLPNL 106

Query: 71  RIMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI--GLLKNLRQLELYYNQ 127
           + ++++   +   +P     +      L++  N     I      GL      L L  N 
Sbjct: 107 QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 128 QLAGTIPEELGNLTELTDLD-MSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVI 185
                I     N T+L +L+    N+L  ++P  +        +L +    +    S  +
Sbjct: 166 I--QEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

Query: 186 ANSTTLTMLSLYDNS 200
            N   L   S Y+  
Sbjct: 223 ENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 34/261 (13%)

Query: 168 RVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG 227
           RV     + ++ EI S +        L      L          +  L  +++S+N +  
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 228 PLPAKVCSR-GKLQYFLVLQ-NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGI-LSL 284
            + A V S   KL    + + N    + P++     NL    +SN  ++  +P+   +  
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHS 127

Query: 285 PHVSIIDLSYNSFSGPIANTV--GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSD 342
               ++D+  N     I      G +     L++ +N I                 ++ +
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ----------------EIHN 171

Query: 343 NLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLC 402
           +  +G         +   L +  +N L     +         +LD+S   +   +P    
Sbjct: 172 SAFNG--------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL 222

Query: 403 ELLPNSINFSNNRLSGPIPLS 423
           E L      S   L     L 
Sbjct: 223 ENLKKLRARSTYNLKKLPTLE 243

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 48/310 (15%), Positives = 90/310 (29%), Gaps = 71/310 (22%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
           + R      +  T + P  +    N   L F      KL  + + + F            
Sbjct: 10  SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLT---KLRVIQKGA-FS----------- 51

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEE 136
                           L  +E++ N +   I  ++   L  L ++ +     L    PE 
Sbjct: 52  ------------GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99

Query: 137 LGNLTELTDLDMSVNHLSGKIPESI-LRLPKLRVLQLYNNSLSGEISSVIANS-----TT 190
             NL  L  L +S   +   +P+   +   +  +L + +N     I ++  NS       
Sbjct: 100 FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI---NIHTIERNSFVGLSFE 155

Query: 191 LTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFS 250
             +L L  N +  E+       + L  L+LS+N                       N   
Sbjct: 156 SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN-----------------------NNLE 191

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSFSGPIANTVGNAR 309
            +  D        +   +S   +  S+P   L +L  +             +   V    
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLEKLV---- 246

Query: 310 NLSELFMQRN 319
            L E  +   
Sbjct: 247 ALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 7e-12
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 14/168 (8%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLT-KL 70
           F  + NL+ L +SN       P     +     +L   +N    +  +  +S   L+ + 
Sbjct: 100 FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFES 156

Query: 71  RIMVLATCALHGQIPASIGNVTSLTDLELTG-NFITGHIPPEI-GLLKNLRQLELYYNQQ 128
            I+ L    +  +I  S  N T L +L L+  N +   +P ++         L++   + 
Sbjct: 157 VILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTR- 213

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS 176
           +       L NL +L     S  +L  K+P ++ +L  L    L   S
Sbjct: 214 IHSLPSYGLENLKKLRAR--STYNLK-KLP-TLEKLVALMEASLTYPS 257

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 27/225 (12%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G+G  G V   +   + E+ AVK L  +   +   D +          E   L    + 
Sbjct: 349 LGKGSFGKVMLSERKGTDELYAVKIL-KKDVVIQDDDVECT------MVEKRVLALPGKP 401

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
             + +L+  F     LY    V EY+  G+L   + +     +       A  +A GL +
Sbjct: 402 PFLTQLHSCFQTMDRLY---FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAA-EIAIGLFF 457

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           L   G    II+RD+K  N++LD     K+ADFG+ K          TT    GT  Y+A
Sbjct: 458 LQSKG----IIYRDLKLDNVMLDSEGHIKIADFGMCK---ENIWDGVTTKTFCGTPDYIA 510

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           PE           D ++FGV+L E++ G+ P E   G++++ ++ 
Sbjct: 511 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE---GEDEDELFQ 552

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 58/253 (22%)

Query: 516 RISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           R+      +L       K+G+G  G V+K ID  +GEVVAVKK+         + TD   
Sbjct: 2   RVDR---HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKI----FDAFQNSTD--- 51

Query: 575 LDKGLKT--EVETLGNIR-HKNIVKLY-----CYFSSLYCNLLVYEYMPNGNLWDA-LHK 625
                +T  E+  L  +  H+NIV L           +Y   LV++YM      +  LH 
Sbjct: 52  ---AQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY---LVFDYM------ETDLHA 99

Query: 626 GLVHLDWPTRHKIAFGVAQ---GLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
            ++  +        + V Q    + YLH G    ++HRD+K +NILL+     KVADFG+
Sbjct: 100 -VIRANILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGL 155

Query: 683 AKVLQARGGKDSTTTVIAGTYG------------------YLAPEYAYSSKA-TTKCDVY 723
           ++         +   +                        Y APE    S   T   D++
Sbjct: 156 SRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMW 215

Query: 724 SFGVVLMELITGR 736
           S G +L E++ G+
Sbjct: 216 SLGCILGEILCGK 228

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 51/248 (20%), Positives = 84/248 (33%), Gaps = 67/248 (27%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
                +G G +G V +  +  + E  A+K L          D          + EVE   
Sbjct: 21  VTSQVLGLGINGKVLQIFNKRTQEKFALKML---------QDC------PKARREVELHW 65

Query: 588 NI-RHKNIVKLYCYFSSLYCN----LLVYEYMPNGNLWDA-LHKGLVHLDWPTRHKIAFG 641
              +  +IV++   + +LY      L+V E +  G L+     +G          +I   
Sbjct: 66  RASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKS 125

Query: 642 VAQGLAYLH-HGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTT 697
           + + + YLH       I HRD+K  N+L      N   K+ DFG AK             
Sbjct: 126 IGEAIQYLHSIN----IAHRDVKPENLLYTSKRPNAILKLTDFGFAKE------------ 169

Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV 757
                Y                CD++S GV++  L+ G  P    F        + +  +
Sbjct: 170 TTGEKYD-------------KSCDMWSLGVIMYILLCGYPP----F--------YSNHGL 204

Query: 758 DTKEGIME 765
               G+  
Sbjct: 205 AISPGMKT 212

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 74/450 (16%), Positives = 155/450 (34%), Gaps = 85/450 (18%)

Query: 16  MQNLRRLDLSNNLFTGQFPLSVF----NLTNLEVLSFNEN----PGFK-LWKLPESSIFR 66
           +Q  + + L +   T      +         L  L+   N     G   + +  ++   +
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 67  LTKLRI---MVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI--GLLKN---L 118
           + KL +    +         + +++  + +L +L L+ N +       +  GLL     L
Sbjct: 87  IQKLSLQNCCLTGAGCGV--LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144

Query: 119 RQLELYYNQ---QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI---LRLP--KLRVL 170
            +L+L Y          +   L    +  +L +S N ++      +   L+    +L  L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 171 QLYNNSLSGE----ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQW-----SPLVVLDLS 221
           +L +  ++ +    +  ++A+  +L  L+L  N L      +L        S L  L + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 222 ENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGI 281
           E  ++    AK C                  L   L   ++L    ++ N L     EG 
Sbjct: 265 ECGIT----AKGCGD----------------LCRVLRAKESLKELSLAGNELG---DEGA 301

Query: 282 LSL--------PHVSIIDLSYNSFSG----PIANTVGNARNLSELFMQRNQISGFIPSEI 329
             L          +  + +   SF+       ++ +   R L EL +  N++      E+
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 330 YRAI-----SLVKIDLSDNLLS----GPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLS-S 379
            + +      L  + L+D  +S      + + +     L  L L +N L  +    L  S
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421

Query: 380 LKS----LNVLDLSNNLLTGYIPESLCELL 405
           ++     L  L L +   +  + + L  L 
Sbjct: 422 VRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 71/452 (15%), Positives = 145/452 (32%), Gaps = 94/452 (20%)

Query: 17  QNLRRLDLSNNLFTGQ-FPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVL 75
            +++ LD+     +   +   +  L   +V+  ++                LT+ R   +
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC--------------GLTEARCKDI 48

Query: 76  ATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIG-LLKN----LRQLELYYNQ--- 127
           ++          +    +L +L L  N +       +   L+     +++L L       
Sbjct: 49  SSA---------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGK----IPESILRL-PKLRVLQLYNNSLSGE-- 180
              G +   L  L  L +L +S N L       + E +L    +L  LQL   SLS    
Sbjct: 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 181 --ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ-----WSPLVVLDLSENKLSGPLPAKV 233
             ++SV+        L++ +N +     + L Q        L  L L    ++    +  
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT----SDN 215

Query: 234 CSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGS----IPEGIL-SLPHVS 288
           C                  L   +A   +L    + +N L       +  G+L     + 
Sbjct: 216 CR----------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 289 IIDLSYNSFSGP----IANTVGNARNLSELFMQRNQISGFIPSEIYRAI-----SLVKID 339
            + +     +      +   +    +L EL +  N++       +   +      L  + 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 340 LSDNLLSG----PIPSGIGNLKKLNLLMLQSNKLNSSIPNSLS-SLKS----LNVLDLSN 390
           +     +        S +   + L  L + +N+L  +    L   L      L VL L++
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 391 NLLTGYIPESLCELLPN-----SINFSNNRLS 417
             ++     SL   L        ++ SNN L 
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 38/248 (15%)

Query: 14  SPMQNLRRLDLSNNLFTGQFPLSVF----NLTNLEVLSFNEN----PGFK-LWKLPESSI 64
            P   L +L L     +      +        + + L+ + N     G + L +  + S 
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198

Query: 65  FRLTKLRIMVLATCALHGQIPASIGNV----TSLTDLELTGNFITGH-----IPPEIGLL 115
            +L  L+   L +C +       +  +     SL +L L  N +         P  +   
Sbjct: 199 CQLEALK---LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 255

Query: 116 KNLRQLELYYNQ---QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRL-----PKL 167
             LR L ++      +  G +   L     L +L ++ N L  +    +         +L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 168 RVLQLYNNSLSGE----ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQW-----SPLVVL 218
             L + + S +       SSV+A +  L  L + +N L     ++L Q      S L VL
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 219 DLSENKLS 226
            L++  +S
Sbjct: 376 WLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 45/247 (18%), Positives = 76/247 (30%), Gaps = 36/247 (14%)

Query: 14  SPMQNLRRLDLSNNLFTGQ----FPLSVFNLTNLEVLSFNENP----GFKLWKLPESSIF 65
                L  L L +   T          V +  +L  L+   N     G     L    + 
Sbjct: 196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE--LCPGLLH 253

Query: 66  RLTKLRIMVLATCALHGQ----IPASIGNVTSLTDLELTGNFITGHIPPEIGLL-----K 116
             ++LR + +  C +  +    +   +    SL +L L GN +       +         
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 117 NLRQLELYYNQ---QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI---LRLP--KLR 168
            L  L +                L     L +L +S N L       +   L  P   LR
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 169 VLQLYNNSLSGE----ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ-----WSPLVVLD 219
           VL L +  +S      +++ +  + +L  L L +N L       L +        L  L 
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433

Query: 220 LSENKLS 226
           L +   S
Sbjct: 434 LYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 41/259 (15%), Positives = 79/259 (30%), Gaps = 49/259 (18%)

Query: 188 STTLTMLSLYDNSLTGEVPQDLGQW-SPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQ 246
           S  +  L +    L+     +L        V+ L +  L+       C            
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT----EARCK----------- 46

Query: 247 NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGI---LSLPHVSI--IDLSYNSFS--- 298
                 +  +L     L    + +N L       +   L  P   I  + L     +   
Sbjct: 47  -----DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101

Query: 299 -GPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI-----SLVKIDLSDNLLS----GP 348
            G +++T+     L EL +  N +       +   +      L K+ L    LS     P
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 349 IPSGIGNLKKLNLLMLQSNKLNSS----IPNSLSSLK-SLNVLDLSNNLLTGYIPESLCE 403
           + S +        L + +N +N +    +   L      L  L L +  +T      LC 
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 404 LLPNS-----INFSNNRLS 417
           ++ +      +   +N+L 
Sbjct: 222 IVASKASLRELALGSNKLG 240

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 78.8 bits (195), Expect = 9e-16
 Identities = 63/235 (26%), Positives = 92/235 (39%), Gaps = 47/235 (20%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG-NIRH 591
           +G+G  G V            AVK L   + K      ++    K + +E   L  N++H
Sbjct: 46  IGKGSFGKVLLARHKAEEVFYAVKVL---QKKAILKKKEE----KHIMSERNVLLKNVKH 98

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG------- 641
             +V L+  F     LY    V +Y+  G L         HL    + +  F        
Sbjct: 99  PFLVGLHFSFQTADKLY---FVLDYINGGEL-------FYHL----QRERCFLEPRARFY 144

Query: 642 ---VAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTT 697
              +A  L YLH       I++RD+K  NILLD      + DFG+ K        +STT+
Sbjct: 145 AAEIASALGYLHSLN----IVYRDLKPENILLDSQGHIVLTDFGLCK---ENIEHNSTTS 197

Query: 698 VIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
              GT  YLAPE  +        D +  G VL E++ G  P    +  N   +Y 
Sbjct: 198 TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPF---YSRNTAEMYD 249

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 58/210 (27%), Positives = 84/210 (40%), Gaps = 36/210 (17%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
           + ++LDL +N  +   P   F  LT L +L  N+N   KL  LP      L  L      
Sbjct: 38  DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN---KLQTLPAGIFKELKNL------ 87

Query: 77  TCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPE 135
                               L +T N +   +P  +   L NL +L L  NQ L  ++P 
Sbjct: 88  ------------------ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LK-SLPP 126

Query: 136 EL-GNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTM 193
            +  +LT+LT L +  N L   +P+ +  +L  L+ L+LYNN L           T L  
Sbjct: 127 RVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185

Query: 194 LSLYDNSLTGEVPQDLGQWSPLVVLDLSEN 223
           L L +N L             L +L L EN
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 18/170 (10%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFN-LTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
           F  +  LR L L++N      P  +F  L NLE L   +N   KL  LP     +L  L 
Sbjct: 57  FHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN---KLQALPIGVFDQLVNLA 112

Query: 72  IMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEIGL---LKNLRQLELYYNQ 127
            + L    L   +P  +  ++T LT L L  N +   +P   G+   L +L++L LY NQ
Sbjct: 113 ELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK--GVFDKLTSLKELRLYNNQ 168

Query: 128 QLAGTIPEEL-GNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNN 175
                +PE     LTEL  L +  N L  ++PE     L KL++LQL  N
Sbjct: 169 --LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 30/206 (14%)

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYFLVLQN 247
                L L  N L+    +   + + L +L L++NKL   LPA +      L+   V  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 248 MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGN 307
               +      +  NL   R+  N L+ S+P  +          L+              
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFD-------SLT-------------- 133

Query: 308 ARNLSELFMQRNQISGFIPSEIYRA-ISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQ 365
              L+ L +  N++   +P  ++    SL ++ L +N L   +P G    L +L  L L 
Sbjct: 134 --KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLD 189

Query: 366 SNKLNSSIPNSLSSLKSLNVLDLSNN 391
           +N+L      +  SL+ L +L L  N
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 269 SNNHLEGSIPEGIL-SLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPS 327
            +N L  S+P      L  + ++ L+ N      A      +NL  L++  N++   +P 
Sbjct: 45  QSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPI 102

Query: 328 EIYRA-ISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSL-SSLKSLN 384
            ++   ++L ++ L  N L   +P  +  +L KL  L L  N+L  S+P  +   L SL 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLK 160

Query: 385 VLDLSNNLLTGYIPESLCELLPN--SINFSNNRLS 417
            L L NN L   +PE   + L    ++   NN+L 
Sbjct: 161 ELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK 194

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 50/328 (15%), Positives = 94/328 (28%), Gaps = 72/328 (21%)

Query: 90  NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMS 149
                    L    +T         L ++ Q+    +        + +  L  +T L ++
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD---IKSVQGIQYLPNVTKLFLN 76

Query: 150 VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDL 209
            N L+  I + +  L  L  L L  N +  ++SS + +   L  LSL  N ++      L
Sbjct: 77  GNKLT-DI-KPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS--DINGL 130

Query: 210 GQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVS 269
                L  L L  NK++                              L+R   L    + 
Sbjct: 131 VHLPQLESLYLGNNKITDI--------------------------TVLSRLTKLDTLSLE 164

Query: 270 NNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI 329
           +N +               I+ L+                 L  L++ +N IS      +
Sbjct: 165 DNQIS-------------DIVPLA-------------GLTKLQNLYLSKNHISDL--RAL 196

Query: 330 YRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLS 389
               +L  ++L          +   NL   N +      L +  P  +S        ++ 
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 254

Query: 390 NNLLTG-----YIPESLCELLPNSINFS 412
            +L        +I      +      F 
Sbjct: 255 WHLPEFTNEVSFIFYQPVTIGKAKARFH 282

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 18/219 (8%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
               + + ++ ++  +N+       +    L N+  L  N N    +       +  L  
Sbjct: 39  AVTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTDI-----KPLANLKN 91

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQL 129
           L  + L    +   +  S+ ++  L  L L  N I+  I   +  L  L  L L  N+  
Sbjct: 92  LGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNK-- 145

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
             T    L  LT+L  L +  N +S  I   +  L KL+ L L  N +S ++ + +A   
Sbjct: 146 -ITDITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLK 200

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGP 228
            L +L L+      +             +  ++  L  P
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 24/219 (10%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           +          + +L     T     +   L +++ +  N +    +       I  L  
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV-----QGIQYLPN 69

Query: 70  LRIMVLATCALHGQIP--ASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
           +  + L       ++     + N+ +L  L L  N +   +   +  LK L+ L L +N 
Sbjct: 70  VTKLFLN----GNKLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNG 123

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIAN 187
               +    L +L +L  L +  N ++  I   + RL KL  L L +N +S +I   +A 
Sbjct: 124 ---ISDINGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAG 176

Query: 188 STTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
            T L  L L  N ++    + L     L VL+L   +  
Sbjct: 177 LTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 16/194 (8%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
           ++     + N+ +L L+ N  T   PL+  NL NL  L  +EN   K+  L  SS+  L 
Sbjct: 60  SVQGIQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDEN---KVKDL--SSLKDLK 112

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
           KL+ + L    +   I   + ++  L  L L  N IT  I   +  L  L  L L  NQ 
Sbjct: 113 KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI 168

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
              +    L  LT+L +L +S NH+S  +  ++  L  L VL+L++     +  +  +N 
Sbjct: 169 ---SDIVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 189 TTLTMLSLYDNSLT 202
                +   D SL 
Sbjct: 224 VVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 52/260 (20%), Positives = 89/260 (34%), Gaps = 40/260 (15%)

Query: 135 EELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTML 194
                  E    ++    ++  + ++   L  +  +   N+ +   +   I     +T L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 73

Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP 254
            L  N LT   P  L     L  L L ENK+             L               
Sbjct: 74  FLNGNKLTDIKP--LANLKNLGWLFLDENKVK-----------DL--------------- 105

Query: 255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSEL 314
            SL   K L    + +N +   I  G++ LP +  + L  N  +      +     L  L
Sbjct: 106 SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161

Query: 315 FMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP 374
            ++ NQIS      +     L  + LS N +S      +  LK L++L L S +  +   
Sbjct: 162 SLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 217

Query: 375 NSLSSLKSLNVLDLSNNLLT 394
           N  S+L   N +  ++  L 
Sbjct: 218 NHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 16/193 (8%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           +   + ++NL  L L  N       L   +L  L+ LS   N    +  +  + +  L +
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHN---GISDI--NGLVHLPQ 135

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQL 129
           L  + L    +       +  +T L  L L  N I+  I P +  L  L+ L L  N   
Sbjct: 136 LESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNH-- 189

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
             +    L  L  L  L++       K       L     ++  + SL      +I++  
Sbjct: 190 -ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP--EIISDDG 246

Query: 190 TLTMLSLYDNSLT 202
                ++  +   
Sbjct: 247 DYEKPNVKWHLPE 259

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 27/225 (12%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G+G  G V    +  +G++ AVK L  +   +   D +         TE   L     H
Sbjct: 31  LGKGSFGKVMLARVKETGDLYAVKVL-KKDVILQDDDVECT------MTEKRILSLARNH 83

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
             + +L+C F     L+    V E++  G+L   + K     +   R   A  +   L +
Sbjct: 84  PFLTQLFCCFQTPDRLF---FVMEFVNGGDLMFHIQKSRRFDEARARFYAA-EIISALMF 139

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           LH  G    II+RD+K  N+LLD     K+ADFG+ K          TT    GT  Y+A
Sbjct: 140 LHDKG----IIYRDLKLDNVLLDHEGHCKLADFGMCK---EGICNGVTTATFCGTPDYIA 192

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           PE           D ++ GV+L E++ G  P E    +N++ ++ 
Sbjct: 193 PEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFE---AENEDDLFE 234

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 27/225 (12%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G+G  G V   +   + E+ AVK L  +   +   D +          E   L    + 
Sbjct: 28  LGKGSFGKVMLSERKGTDELYAVKIL-KKDVVIQDDDVECT------MVEKRVLALPGKP 80

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
             + +L+  F     LY    V EY+  G+L   + +     +       A  +A GL +
Sbjct: 81  PFLTQLHSCFQTMDRLY---FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAA-EIAIGLFF 136

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           L   G    II+RD+K  N++LD     K+ADFG+ K          TT    GT  Y+A
Sbjct: 137 LQSKG----IIYRDLKLDNVMLDSEGHIKIADFGMCK---ENIWDGVTTKTFCGTPDYIA 189

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           PE           D ++FGV+L E++ G+ P E   G++++ ++ 
Sbjct: 190 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE---GEDEDELFQ 231

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 76.9 bits (190), Expect = 3e-15
 Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 28/227 (12%)

Query: 533 KV-GQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG-NI 589
           K+ G+G  G V+  +   + +  A+K L     K      D +   +    E   L    
Sbjct: 23  KMLGKGSFGKVFLAEFKKTNQFFAIKAL----KKDVVLMDDDV---ECTMVEKRVLSLAW 75

Query: 590 RHKNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            H  +  ++C F    +L+    V EY+  G+L   +               A  +  GL
Sbjct: 76  EHPFLTHMFCTFQTKENLF---FVMEYLNGGDLMYHIQSCHKFDLSRATFYAA-EIILGL 131

Query: 647 AYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGY 705
            +LH  G    I++RD+K  NILLD +   K+ADFG+ K        D+ T    GT  Y
Sbjct: 132 QFLHSKG----IVYRDLKLDNILLDKDGHIKIADFGMCK---ENMLGDAKTNTFCGTPDY 184

Query: 706 LAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
           +APE     K     D +SFGV+L E++ G+ P     G ++  ++ 
Sbjct: 185 IAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFH---GQDEEELFH 228

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 76.9 bits (190), Expect = 3e-15
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 36/235 (15%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G+G    V  + L  +  + A+K +  +       D D +      +TE         H
Sbjct: 17  IGRGSYAKVLLVRLKKTDRIYAMKVV-KKELVNDDEDIDWV------QTEKHVFEQASNH 69

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQ---G 645
             +V L+  F   S L+    V EY+  G+L   + +     +   R    F  A+    
Sbjct: 70  PFLVGLHSCFQTESRLF---FVIEYVNGGDLMFHMQRQRKLPEEHAR----FYSAEISLA 122

Query: 646 LAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           L YLH  G    II+RD+K  N+LLD     K+ D+G+ K          TT+   GT  
Sbjct: 123 LNYLHERG----IIYRDLKLDNVLLDSEGHIKLTDYGMCK---EGLRPGDTTSTFCGTPN 175

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP------VEDDFGDNKNIIYWV 753
           Y+APE           D ++ GV++ E++ GR P       ++   + ++ ++ V
Sbjct: 176 YIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQV 230

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 54/359 (15%), Positives = 116/359 (32%), Gaps = 80/359 (22%)

Query: 93  SLTDLELTGNFITG----HIPPEIGLLKNLRQLELYYNQ---QLAGTIPEELGNLTELTD 145
           S+    L  + IT      +   +    +++++ L  N    + A  + E + +  +L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 146 LDMSVNHLSGK----------IPESILRLPKLRVLQLYNNSLSGE----ISSVIANSTTL 191
            + S                 + +++L+ PKL  ++L +N+        +   ++  T L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 192 TMLSLYDNSLTGE-------------VPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGK 238
             L L++N L  +             V +      PL  +    N+L      K      
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMK------ 177

Query: 239 LQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHL-----EGSIPEGILSLPHVSIIDLS 293
                            +    + L   ++  N +     E  + EG+     + ++DL 
Sbjct: 178 -------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 294 YNSFSGP----IANTVGNARNLSELFMQRNQISGFIPSEIYRAI------SLVKIDLSDN 343
            N+F+      +A  + +  NL EL +    +S    + +  A        L  + L  N
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284

Query: 344 LLSGPIPSGIG-----NLKKLNLLMLQSNKLN------SSIPNSLSSLKSLNVLDLSNN 391
            +       +       +  L  L L  N+ +        I    S+     + +L + 
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 55/337 (16%), Positives = 111/337 (32%), Gaps = 77/337 (22%)

Query: 137 LGNLTELTDLDMSVNHLSGK----IPESILRLPKLRVLQLYNNSLSGE----ISSVIANS 188
           +   + +    + ++ ++ +    +   +L    ++ + L  N++  E    +S  IA+ 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 189 TTLTMLSLYDNS---LTGEVPQDLGQWSP-------LVVLDLSENKLSGPLPAKVCSRGK 238
             L +    D     +  E+P+ L            L  + LS+N   GP   +      
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLI--- 115

Query: 239 LQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHL-------------EGSIPEGILSLP 285
                           D L++   L    + NN L             E ++ +   + P
Sbjct: 116 ----------------DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 286 HVSIIDLSYNSFSGP----IANTVGNARNLSELFMQRNQI-----SGFIPSEIYRAISLV 336
            +  I    N          A T  + R L  + M +N I        +   +     L 
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219

Query: 337 KIDLSDNLLSGP----IPSGIGNLKKLNLLMLQSNKLNS----SIPNSLSSL--KSLNVL 386
            +DL DN  +      +   + +   L  L L    L++    ++ ++ S L    L  L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 387 DLSNNLLTG----YIPESLCELLPN--SINFSNNRLS 417
            L  N +       +   + E +P+   +  + NR S
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 45/237 (18%), Positives = 74/237 (31%), Gaps = 41/237 (17%)

Query: 17  QNLRRLDLSNNLFT--GQFPLSVF--NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
             L  + LS+N F    Q PL  F    T LE L  + N               L     
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN--------------GLGPQAG 139

Query: 73  MVLATCALHGQIPASIGNVTSLTDLELTGNFITG----HIPPEIGLLKNLRQLELYYNQ- 127
             +A       +     N   L  +    N +               + L  +++  N  
Sbjct: 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199

Query: 128 ---QLAGTIPEELGNLTELTDLDMSVNHLSGK----IPESILRLPKLRVLQLYNNSLSGE 180
               +   + E L    EL  LD+  N  +      +  ++   P LR L L +  LS  
Sbjct: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

Query: 181 ----ISSVIAN--STTLTMLSLYDNSLTGEVPQDLGQ-----WSPLVVLDLSENKLS 226
               +    +   +  L  L L  N +  +  + L          L+ L+L+ N+ S
Sbjct: 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 55/326 (16%), Positives = 106/326 (32%), Gaps = 83/326 (25%)

Query: 16  MQNLRRLDLSNNLFT--GQFPLSVF--NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
             +++ + LS N         LS    +  +LE+  F++    ++      ++  L +  
Sbjct: 31  DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ-- 88

Query: 72  IMVLATCALHGQIPASIGNVTSLTDLELTGNFITG----HIPPEIGLLKNLRQLELYYNQ 127
              L  C               L  + L+ N         +   +     L  L L+ N 
Sbjct: 89  --ALLKC-------------PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133

Query: 128 -------QLAGTIPE-----ELGNLTELTDLDMSVNHLSGK----IPESILRLPKLRVLQ 171
                  ++A  + E     +  N   L  +    N L         ++      L  ++
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193

Query: 172 LYNNSLSGE-----ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ----WSPLVVLDLSE 222
           +  N +  E     +   +A    L +L L DN+ T      L      W  L  L L++
Sbjct: 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253

Query: 223 NKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKN--LLRFRVSNNHLEGSIPEG 280
             LS        +RG               + D+ ++ +N  L   R+  N +E    + 
Sbjct: 254 CLLS--------ARGAAA------------VVDAFSKLENIGLQTLRLQYNEIE---LDA 290

Query: 281 ILSL--------PHVSIIDLSYNSFS 298
           + +L        P +  ++L+ N FS
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNRFS 316

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 77.0 bits (190), Expect = 5e-15
 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 30/232 (12%)

Query: 534 VGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RH 591
           +G+G    V  + L  +  + A++ +  +       D D +      +TE         H
Sbjct: 60  IGRGSYAKVLLVRLKKTDRIYAMRVV-KKELVNDDEDIDWV------QTEKHVFEQASNH 112

Query: 592 KNIVKLYCYF---SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
             +V L+  F   S L+    V EY+  G+L   + +     +   R   A  ++  L Y
Sbjct: 113 PFLVGLHSCFQTESRLF---FVIEYVNGGDLMFHMQRQRKLPEEHARFYSA-EISLALNY 168

Query: 649 LH-HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           LH  G    II+RD+K  N+LLD     K+ D+G+ K          TT+   GT  Y+A
Sbjct: 169 LHERG----IIYRDLKLDNVLLDSEGHIKLTDYGMCK---EGLRPGDTTSTFCGTPNYIA 221

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKP------VEDDFGDNKNIIYWV 753
           PE           D ++ GV++ E++ GR P       ++   + ++ ++ V
Sbjct: 222 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQV 273

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 24/206 (11%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRL 67
            +P   P  + + L L         P   F NL N+  +  + +    L +L   S + L
Sbjct: 25  RIPSLPP--STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV--TLQQLESHSFYNL 79

Query: 68  TKLRIMVLA-TCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPE--IGLLKNLRQLEL 123
           +K+  + +  T  L   I       +  L  L +    +    P    +        LE+
Sbjct: 80  SKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137

Query: 124 YYNQQLAGTIPEE-LGNLT-ELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEI 181
             N  +  +IP      L  E   L +  N  +  +        KL  + L  N     +
Sbjct: 138 TDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKY---L 192

Query: 182 SSVIANS-----TTLTMLSLYDNSLT 202
           + +  ++     +  ++L +   S+T
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 14/201 (6%)

Query: 92  TSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEEL-GNLTELTDLDMS 149
            S   L+L    +   IP      L N+ ++ +  +  L   +      NL+++T +++ 
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIR 88

Query: 150 VNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIA--NSTTLTMLSLYDNSLTGEVP 206
                  I    L+ LP L+ L ++N  L      +    ++    +L + DN     +P
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 207 QDL--GQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP-DSLARCKNL 263
            +   G  +  + L L  N  +  +     +  KL    + +N +  V+  D+     + 
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 264 LRF-RVSNNHLEGSIPEGILS 283
                VS   +  ++P   L 
Sbjct: 207 PSLLDVSQTSVT-ALPSKGLE 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 13/169 (7%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFR-LTKL 70
           F  +  +  +++ N              L  L+ L         L   P+ +        
Sbjct: 76  FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT---GLKMFPDLTKVYSTDIF 132

Query: 71  RIMVLATCALHGQIPASI--GNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
            I+ +        IP +   G       L+L  N  T  +         L  + L  N+ 
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKY 191

Query: 129 LAGTIPEEL--GNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYN 174
           L   I ++   G  +  + LD+S   ++  +P   L  L +L     + 
Sbjct: 192 LT-VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 12/166 (7%)

Query: 259 RCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQR 318
            C     FRV+   ++  IP      P    + L         ++   N  N+S +++  
Sbjct: 9   ECHQEEDFRVTCKDIQ-RIPSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI 64

Query: 319 NQISGFIPSEIYRA-ISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPN- 375
           +     + S  +     +  I++ +      I       L  L  L + +  L    P+ 
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDL 123

Query: 376 -SLSSLKSLNVLDLSNNLLTGYIPESLCELLPN---SINFSNNRLS 417
             + S     +L++++N     IP +  + L N   ++   NN  +
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 14/186 (7%)

Query: 243 LVLQ-NMFSGVLPDSLARCKNLLRFRVS-NNHLEGSIPEGILS-LPHVSIIDLSYNSFSG 299
           L L       +   + +   N+ R  VS +  L+  +       L  V+ I++       
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 300 PI-ANTVGNARNLSELFMQRNQISGFIPSE--IYRAISLVKIDLSDNLLSGPIPSGI--G 354
            I  + +     L  L +    +    P    +Y       ++++DN     IP     G
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153

Query: 355 NLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINF--- 411
              +   L L +N   +S+     +   L+ + L+ N     I +     + +  +    
Sbjct: 154 LCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212

Query: 412 SNNRLS 417
           S   ++
Sbjct: 213 SQTSVT 218

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 15/151 (9%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGL--LKNLRQLELYYNQQLAGTIPEE-LGNL 140
           +P S+   +    L+L+ N ++  +  E     L NL  L L +N      I  E    +
Sbjct: 33  VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH--LNFISSEAFVPV 87

Query: 141 TELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
             L  LD+S NHL   + E +   L  L VL LYNN +     +   +   L  L L  N
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 200 SLTGEVP----QDLGQWSPLVVLDLSENKLS 226
            ++   P    +D  +   L++LDLS NKL 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 16/169 (9%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
               LDLS+N  +          LTNL  L  + N    L  +   +   +  LR + L+
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN---HLNFISSEAFVPVPNLRYLDLS 96

Query: 77  TCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIP 134
           +  LH  +   +  ++ +L  L L  N I   +       +  L++L L  NQ ++   P
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ-IS-RFP 152

Query: 135 EE----LGNLTELTDLDMSVNHLSGKIPESILRLPKL--RVLQLYNNSL 177
            E       L +L  LD+S N L       + +LP      L L+NN L
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 23/180 (12%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPIANTV-GNARNLSELFMQRNQISGFIPSEIYRAI- 333
           ++P+ +    + +++DLS+N+ S   A        NL  L +  N ++ FI SE +  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 334 SLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNL 392
           +L  +DLS N L   +   +  +L+ L +L+L +N +     N+   +  L  L LS N 
Sbjct: 89  NLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 393 LTGYIPESL---CELLPN--SINFSNNRLSGPIPL-------SLIKEGLVESFSGNPGLC 440
           ++   P  L      LP    ++ S+N+L   +PL       + +K GL      NP  C
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGL--YLHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 90  NVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEE-LGNLTELTDLD 147
            +T+L  L L+ N +   I  E    + NLR L+L  N  L  T+ E    +L  L  L 
Sbjct: 62  RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH-LH-TLDEFLFSDLQALEVLL 118

Query: 148 MSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEISSVIANS---TTLTMLSLYDNSLTG 203
           +  NH+   +  +    + +L+ L L  N +S     +I +      L +L L  N L  
Sbjct: 119 LYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177

Query: 204 EVPQDLGQWSPLVV--LDLSEN 223
               DL +    V   L L  N
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 51/243 (20%), Positives = 74/243 (30%), Gaps = 84/243 (34%)

Query: 157 IPESILRLPKLRVLQLYNNSLSGEISS--VIANSTTLTMLSLYDNSLTGEVP----QDLG 210
           +P+S+       +L L +N+LS  + +       T L  L L  N L   +       + 
Sbjct: 33  VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 211 QWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN 270
               L  LDLS N L   L                            +  + L    + N
Sbjct: 89  N---LRYLDLSSNHLHT-LD-----------------------EFLFSDLQALEVLLLYN 121

Query: 271 NHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIY 330
           NH+   +                  +F             L +L++ +NQIS   P E+ 
Sbjct: 122 NHIV-VVDRN---------------AFED--------MAQLQKLYLSQNQIS-RFPVELI 156

Query: 331 RAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSL--NVLDL 388
           +                        L KL LL L SNKL       L  L +   N L L
Sbjct: 157 K--------------------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 389 SNN 391
            NN
Sbjct: 197 HNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 9   TLPD--FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPE---S 62
           TL +  FS +Q L  L L NN        + F ++  L+ L  ++N   ++ + P     
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN---QISRFPVELIK 157

Query: 63  SIFRLTKLRIMVLATCALHGQIPASIGNVTSLT--DLELTGN 102
              +L KL ++ L++  L       +  + +     L L  N
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 41/226 (18%)

Query: 523 EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E+L+ +      G+G  G V K  D    + VA+K + +++     +             
Sbjct: 100 EVLKVI------GKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQA-----------AE 142

Query: 582 EVETLGNIRHK------NIVKLYCYFSSLYCN--LLVYEYMPNGNLWDALHKG-LVHLDW 632
           E+  L ++R +      N++ +   F   + N   + +E + + NL++ + K        
Sbjct: 143 EIRILEHLRKQDKDNTMNVIHMLENF--TFRNHICMTFELL-SMNLYELIKKNKFQGFSL 199

Query: 633 PTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARG 690
           P   K A  + Q L  LH    + IIH D+K  NILL    +   KV DFG +       
Sbjct: 200 PLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH--- 253

Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
                 T I   + Y APE    ++     D++S G +L EL+TG 
Sbjct: 254 --QRVYTYIQSRF-YRAPEVILGARYGMPIDMWSLGCILAELLTGY 296

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 74.0 bits (182), Expect = 4e-14
 Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 33/217 (15%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           + +G+G  G V K  D    E VA+K + +++  ++ +           + EV  L  + 
Sbjct: 60  SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQA-----------QIEVRLLELMN 108

Query: 591 H------KNIVKLYCYFSSLYCN--LLVYEYMPNGNLWDALHK-GLVHLDWPTRHKIAFG 641
                    IV L  +F  ++ N   LV+E + + NL+D L       +      K A  
Sbjct: 109 KHDTEMKYYIVHLKRHF--MFRNHLCLVFEML-SYNLYDLLRNTNFRGVSLNLTRKFAQQ 165

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP--KVADFGIAKVLQARGGKDSTTTVI 699
           +   L +L    LS IIH D+K  NILL    +   K+ DFG +  L            I
Sbjct: 166 MCTALLFLATPELS-IIHCDLKPENILLCNPKRSAIKIVDFGSSCQLG-----QRIYQYI 219

Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
              + Y +PE           D++S G +L+E+ TG 
Sbjct: 220 QSRF-YRSPEVLLGMPYDLAIDMWSLGCILVEMHTGE 255

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 73.8 bits (181), Expect = 4e-14
 Identities = 57/266 (21%), Positives = 92/266 (34%), Gaps = 45/266 (16%)

Query: 558 LWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNG 617
           L S+R +     T   +  +G         +++ +         S+    +         
Sbjct: 118 LRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVE 177

Query: 618 NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV 677
                       L        +F VA+G+ +L        IHRD+ + NILL      K+
Sbjct: 178 EEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKI 234

Query: 678 ADFGIAKVLQARGGKDSTTTVIAGTYGYL-----APEYAYSSKATTKCDVYSFGVVLMEL 732
            DFG+A+ +            +      L     APE  +    T + DV+SFGV+L E+
Sbjct: 235 CDFGLARDIY------KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 288

Query: 733 IT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFR--------DEMIQVL 783
            + G  P            Y   +K+D      E   +   G  R         EM Q +
Sbjct: 289 FSLGASP------------YP-GVKIDE-----EFCRRLKEG-TRMRAPDYTTPEMYQTM 329

Query: 784 RIAIRCTSKSPATRPTMNEVVQLLAE 809
                C    P+ RPT +E+V+ L  
Sbjct: 330 L---DCWHGEPSQRPTFSELVEHLGN 352

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 32/132 (24%)

Query: 506 FFPYDVKSF----HRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAV 555
             PYD   +     R+   +            +G+G  G V +          +   VAV
Sbjct: 9   RLPYDASKWEFPRDRLKLGK-----------PLGRGAFGQVIEADAFGIDKTATCRTVAV 57

Query: 556 KKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY-CYFSSLYCNLLVYEY 613
           K L     K  A+ ++     + L +E++ L +I  H N+V L           +++ E+
Sbjct: 58  KML-----KEGATHSEH----RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 108

Query: 614 MPNGNLWDALHK 625
              GNL   L  
Sbjct: 109 CKFGNLSTYLRS 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.4 bits (174), Expect = 8e-13
 Identities = 67/392 (17%), Positives = 115/392 (29%), Gaps = 112/392 (28%)

Query: 456 PHTKTR-RRLSSIWAVV---TSAVIIFIGLLL-----FLKRRFSKQRAITEPDETL---- 502
               +   RL   W ++      V  F+  +L     FL      ++        +    
Sbjct: 58  KDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 503 -------SSSFFPYDV---KSFHRISFDQREILEAMTEKNKV---GQGGSG-TVYKID-L 547
                  +  F  Y+V   + + ++    R+ L  +     V   G  GSG T   +D  
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKL----RQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 548 NSGEVVAV---KKLW--SQRTKVSASDTDQLQ-----LDKGLKTEVETLGNIRHKNIVKL 597
            S +V      K  W   +      +  + LQ     +D    +  +   NI+   I  +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSI 230

Query: 598 YCYFSSL-----YCN-LLVYEYMPNGNLWDALH---KGLVHLDWPTRHKIAFGVAQGLAY 648
                 L     Y N LLV   + N   W+A +   K L+     TR K           
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDFLSAATT 286

Query: 649 LHHGL--LSPIIHRDIKSTNIL---LDVNYQ--PKVADFG-------IAKVLQ------- 687
            H  L   S  +  D +  ++L   LD   Q  P+            IA+ ++       
Sbjct: 287 THISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 688 --ARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVY-SFGVVLMELITGRKPVEDDFG 744
                  D  TT+I  +   L P             ++    V               F 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYR--------KMFDRLSV---------------FP 382

Query: 745 DNKNI------IYWVSIKVDTKEGIMEVLDKK 770
            + +I      + W  +       ++  L K 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 4e-10
 Identities = 88/641 (13%), Positives = 178/641 (27%), Gaps = 223/641 (34%)

Query: 26  NNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIP 85
           + L+      + +N++ L+             KL ++    L +LR        + G   
Sbjct: 117 DRLYNDNQVFAKYNVSRLQ----------PYLKLRQA----LLELRPAKNVL--IDGV-- 158

Query: 86  ASIGNVTSLT-----DLELTGNF------IT-GHIPPEIGLLKNLRQLELYYNQQLAGTI 133
              G  T +        ++          +   +      +L+ L++L   Y  Q+    
Sbjct: 159 LGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LY--QIDP-- 211

Query: 134 PEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTM 193
                N T  +D   ++      I   + RL K +    Y N L                
Sbjct: 212 -----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCL---------------- 247

Query: 194 LSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVL 253
                                 +VL              V +      F +         
Sbjct: 248 ----------------------LVLL------------NVQNAKAWNAFNL--------- 264

Query: 254 PDSLARCKNLL--RFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNL 311
                 CK LL  RF+   + L  +         H+S+   S  +       T    ++L
Sbjct: 265 -----SCKILLTTRFKQVTDFLSAATTT------HISLDHHS-MTL------TPDEVKSL 306

Query: 312 SELFMQRNQISGFIPSEIY----RAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSN 367
              ++  +     +P E+     R +S++   + D        +   N K +N      +
Sbjct: 307 LLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDG------LATWDNWKHVNC-----D 353

Query: 368 KLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKE 427
           KL + I +SL+ L+      +       +  + L  + P S +         IP  L   
Sbjct: 354 KLTTIIESSLNVLEPAEYRKM-------F--DRL-SVFPPSAH---------IPTIL--- 391

Query: 428 GLVESFSGNPGLCVSVSVNSSDKNFPLCPHTKTRRRLSSIWAVVTSAVIIFIGLLLFLKR 487
                                               LS IW  V  + ++ + +    K 
Sbjct: 392 ------------------------------------LSLIWFDVIKSDVMVV-VNKLHKY 414

Query: 488 ----RFSKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVY 543
               +  K+  I+ P   L       +  + HR   D   I +     + +        Y
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 544 -------KIDLNSGEVVAVKKL-----WSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
                  K   +   +   + +     + ++ K+    T          + + TL  ++ 
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHDST----AWNASGSILNTLQQLKF 529

Query: 592 --KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
               I      +  L   +L +      NL  + +  L+ +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 62/384 (16%), Positives = 118/384 (30%), Gaps = 100/384 (26%)

Query: 509 YDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYKID--LNSGEVVAVKK--------- 557
            DV+   +    + EI   +  K+ V    SGT+      L+  E + V+K         
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAV----SGTLRLFWTLLSKQEEM-VQKFVEEVLRIN 90

Query: 558 ---LWSQ---RTKVSASDTDQL--QLDKGLKTEVETL--GNI-RHKNIVKLYCYFSSLYC 606
              L S      +  +  T     Q D+ L  + +     N+ R +  +KL         
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKL--------- 140

Query: 607 NLLVYEYMPNGNLWDALH--KG--------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSP 656
              + E  P  N+   +    G         V L +  + K+ F +     +L+      
Sbjct: 141 RQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI----FWLNLKN--- 191

Query: 657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY-GYLAPEYAYSSK 715
             +       +L  + YQ       I     +R   D ++ +    +           SK
Sbjct: 192 -CNSPETVLEMLQKLLYQ-------IDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSK 241

Query: 716 ATTKC-----DVYS------FGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD---TKE 761
               C     +V +      F +    L+T R     DF       +          T +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA---DPCRFESC 818
            +  +L K L    +D   +VL         +P         + ++AE+       +++ 
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTT-------NPR-------RLSIIAESIRDGLATWDNW 347

Query: 819 KFPNKSNKESSNATKIKN--PSEL 840
           K  N     +   + +    P+E 
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEY 371

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 20/174 (11%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRL 67
           ++     + N+R L L  N       +S    LTNL  L    N   +L  LP     +L
Sbjct: 55  SVQGIQYLPNVRYLALGGNKLH---DISALKELTNLTYLILTGN---QLQSLPNGVFDKL 108

Query: 68  TKLRIMVLATCALHGQIPASIGN-VTSLTDLELTGNFITGHIPPEIGL---LKNLRQLEL 123
           T L+ +VL    L   +P  + + +T+LT L L  N +   +P   G+   L NL +L+L
Sbjct: 109 TNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPK--GVFDKLTNLTELDL 164

Query: 124 YYNQQLAGTIPEEL-GNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNN 175
            YNQ  +  +PE +   LT+L DL +  N L   +P+ +  RL  L+ + L++N
Sbjct: 165 SYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 47/207 (22%), Positives = 70/207 (33%), Gaps = 28/207 (13%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ-QLAGTIPEELGNLTE 142
            P             L    +T     +  L  ++ Q+    +  +    I      L  
Sbjct: 13  FPDDAF--AETIKANLKKKSVT-DAVTQNEL-NSIDQIIANNSDIKSVQGIQY----LPN 64

Query: 143 LTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT 202
           +  L +  N L   I  ++  L  L  L L  N L    + V    T L  L L +N L 
Sbjct: 65  VRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 203 ---GEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR-GKLQYFLVLQNMFSGVLP---- 254
                V   L     L  L+L+ N+L   LP  V  +   L    +  N     LP    
Sbjct: 123 SLPDGVFDKLTN---LTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF 177

Query: 255 DSLARCKNLLRFRVSNNHLEGSIPEGI 281
           D L     L   R+  N L+ S+P+G+
Sbjct: 178 DKLT---QLKDLRLYQNQLK-SVPDGV 200

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 54/257 (21%), Positives = 90/257 (35%), Gaps = 66/257 (25%)

Query: 141 TELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNS 200
            E    ++    ++         L  +  +   N+ +       I     +  L+L  N 
Sbjct: 19  AETIKANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNK 74

Query: 201 LTGEVPQDLGQWSPLV---VLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSL 257
           L      D+     L     L L+ N+L   LP  V                     D L
Sbjct: 75  L-----HDISALKELTNLTYLILTGNQLQS-LPNGV--------------------FDKL 108

Query: 258 ARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQ 317
               NL    +  N L+ S+P+G+               F            NL+ L + 
Sbjct: 109 ---TNLKELVLVENQLQ-SLPDGV---------------FDKLT--------NLTYLNLA 141

Query: 318 RNQISGFIPSEIY-RAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPN 375
            NQ+   +P  ++ +  +L ++DLS N L   +P G+   L +L  L L  N+L S +P+
Sbjct: 142 HNQLQS-LPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS-VPD 198

Query: 376 -SLSSLKSLNVLDLSNN 391
                L SL  + L +N
Sbjct: 199 GVFDRLTSLQYIWLHDN 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 4e-12
 Identities = 54/318 (16%), Positives = 98/318 (30%), Gaps = 64/318 (20%)

Query: 94  LTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHL 153
           L    L                 + ++  L  ++        +     +L   ++SV   
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRP--ECWCRDSATDEQLFRCELSVEKS 361

Query: 154 SGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWS 213
           +  +   +    +L+ L+  N      I   I     L  L     +L          +S
Sbjct: 362 T-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETLQ--------YFS 409

Query: 214 PLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHL 273
            L  +D                     Y   L++ F            ++    +++  L
Sbjct: 410 TLKAVDPMR----------------AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 274 EGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI 333
             ++   +  L  V+ +DLS+N                             +P  +    
Sbjct: 454 --TVLCHLEQLLLVTHLDLSHNRLRA-------------------------LPPALAALR 486

Query: 334 SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNS-SIPNSLSSLKSLNVLDLSNNL 392
            L  +  SDN L      G+ NL +L  L+L +N+L   +    L S   L +L+L  N 
Sbjct: 487 CLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

Query: 393 LT---GYIPESLCELLPN 407
           L    G   E L E+LP+
Sbjct: 545 LCQEEGIQ-ERLAEMLPS 561

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 1e-10
 Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 11/200 (5%)

Query: 2   SFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPE 61
           S   L    P+         L +           ++   + L+ +           +   
Sbjct: 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 429

Query: 62  SSIFRLTKLRIMVLATCALHG---QIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNL 118
                + K+    +    L      +   +  +  +T L+L+ N +   +PP +  L+ L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488

Query: 119 RQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSG-KIPESILRLPKLRVLQLYNNSL 177
             L+   N        + + NL  L +L +  N L      + ++  P+L +L L  NSL
Sbjct: 489 EVLQASDNAL---ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

Query: 178 S---GEISSVIANSTTLTML 194
               G    +     +++ +
Sbjct: 546 CQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 5e-09
 Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 41/256 (16%)

Query: 166 KLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKL 225
            L    L +         +   S +     L          +D      L   +LS  K 
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLL-KDRPECWCRDSATDEQLFRCELSVEKS 361

Query: 226 SGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLP 285
           +         + +L+    LQ +        L     +               E +    
Sbjct: 362 T-------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE-----KETLQYFS 409

Query: 286 HVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLL 345
            +  +D                    + L   R++              +  + L+   L
Sbjct: 410 TLKAVDPM----------------RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 346 SGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL- 404
           +  +   +  L  +  L L  N+L  ++P +L++L+ L VL  S+N L      ++  + 
Sbjct: 454 T--VLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-----NVDGVA 505

Query: 405 -LPN--SINFSNNRLS 417
            LP    +   NNRL 
Sbjct: 506 NLPRLQELLLCNNRLQ 521

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 90  NVTSLTDLELTGNFITGHIPPEIGL---LKNLRQLELYYNQQLAGTIPEEL-GNLTELTD 145
               L  ++L+ N I+  + P       L++L  L LY N+ +   +P+ L   L  L  
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNK-IT-ELPKSLFEGLFSLQL 108

Query: 146 LDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
           L ++ N ++  +       L  L +L LY+N L        +    +  + L  N
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 36/162 (22%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
            +  + L  N      P   F     L  +  + N   ++ +L   +   L         
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN---QISELAPDAFQGLR-------- 80

Query: 77  TCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPE 135
                           SL  L L GN IT  +P  +   L +L+ L L  N+ +   +  
Sbjct: 81  ----------------SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANK-IN-CLRV 121

Query: 136 EL-GNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNN 175
           +   +L  L  L +  N L   I +     L  ++ + L  N
Sbjct: 122 DAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 9/143 (6%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEI-YRAIS 334
            IP  +     ++ I L  N+            + L  + +  NQIS  +  +      S
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 335 LVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLL 393
           L  + L  N ++  +P  +   L  L LL+L +NK+N    ++   L +LN+L L +N L
Sbjct: 82  LNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 394 TGYIPESLCELLPN--SINFSNN 414
              I +     L    +++ + N
Sbjct: 141 QT-IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFN-LTNLEVLSFNENPGFKLWKLPESSIF-RLTKL 70
           FSP + LRR+DLSNN  + +     F  L +L  L    N   K+ +LP  S+F  L  L
Sbjct: 52  FSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN---KITELP-KSLFEGLFSL 106

Query: 71  RIMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYN 126
           ++++L    ++  +      ++ +L  L L  N +   I       L+ ++ + L  N
Sbjct: 107 QLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 168 RVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVP----QDLGQWSPLVVLDLSEN 223
             ++L  N++        +    L  + L +N ++ E+     Q L     L  L L  N
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS---LNSLVLYGN 90

Query: 224 KLSGPLPAKVCSR-GKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL 282
           K++  LP  +      LQ  L+  N  + +  D+     NL    + +N L+ +I +G  
Sbjct: 91  KITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148

Query: 283 -SLPHVSIIDLSYNSF 297
             L  +  + L+ N F
Sbjct: 149 SPLRAIQTMHLAQNPF 164

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 43/211 (20%)

Query: 16  MQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVL 75
           + N  + +L     T         L+ ++  + + +               +  L     
Sbjct: 18  LANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNS--------------NIQSL----- 56

Query: 76  ATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPE 135
                     A +   T+L +L L+ N I+  + P +  L  L +L +  N+        
Sbjct: 57  ----------AGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRL---KNLN 101

Query: 136 ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLS 195
            + +   L+ L +  N L     +S++ L  L +L + NN L   I   +   + L +L 
Sbjct: 102 GIPSAC-LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLD 156

Query: 196 LYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
           L+ N +T      L +   +  +DL+  K  
Sbjct: 157 LHGNEIT--NTGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 49/280 (17%), Positives = 83/280 (29%), Gaps = 66/280 (23%)

Query: 115 LKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN 174
           L N  +  L        T       L+ + + +   +++   +   +     L+ L L +
Sbjct: 18  LANAVKQNLGKQS---VTDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSH 72

Query: 175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVC 234
           N +S ++S  + + T L  LS+  N L           + L  L L  N+L         
Sbjct: 73  NQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNNELRD------- 120

Query: 235 SRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSY 294
                               DSL   KNL    + NN L+             SI+ L  
Sbjct: 121 -------------------TDSLIHLKNLEILSIRNNKLK-------------SIVMLG- 147

Query: 295 NSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIG 354
                           L  L +  N+I+      + R   +  IDL+             
Sbjct: 148 ------------FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQP 193

Query: 355 NLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT 394
            L   N +     +  S  P  +S+  S     +   L  
Sbjct: 194 ELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 43/203 (21%)

Query: 24  LSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQ 83
                    FP     L N    +  +                +T L             
Sbjct: 4   QRPTPINQVFPDP--GLANAVKQNLGKQ--------------SVTDL------------- 34

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL 143
              S   ++ + +     + I   +   +    NL++L L +NQ    +    L +LT+L
Sbjct: 35  --VSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQ---ISDLSPLKDLTKL 87

Query: 144 TDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTG 203
            +L ++ N L   +  + +    L  L L NN L  +  S + +   L +LS+ +N L  
Sbjct: 88  EELSVNRNRLK-NL--NGIPSACLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKLKS 142

Query: 204 EVPQDLGQWSPLVVLDLSENKLS 226
            V   LG  S L VLDL  N+++
Sbjct: 143 IVM--LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 36/208 (17%), Positives = 64/208 (30%), Gaps = 40/208 (19%)

Query: 88  IGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLD 147
              + +     L    +T  +      L  ++      +          +   T L +L 
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNI---QSLAGMQFFTNLKELH 69

Query: 148 MSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQ 207
           +S N +S  +   +  L KL  L +  N L   ++ +   S  L+ L L +N L      
Sbjct: 70  LSHNQIS-DL-SPLKDLTKLEELSVNRNRLK-NLNGI--PSACLSRLFLDNNELRD--TD 122

Query: 208 DLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFR 267
            L     L +L +  NKL             +                 L     L    
Sbjct: 123 SLIHLKNLEILSIRNNKLK-----------SI---------------VMLGFLSKLEVLD 156

Query: 268 VSNNHLEGSIPEGILSLPHVSIIDLSYN 295
           +  N +  +   G+  L  V+ IDL+  
Sbjct: 157 LHGNEIT-NT-GGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 41/193 (21%)

Query: 10  LPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTK 69
           L     +  ++  +  N+       +     TNL+ L  + N              +++ 
Sbjct: 34  LVSQKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHLSHN--------------QISD 77

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQL 129
           L               + + ++T L +L +  N +  ++         L +L L  N+  
Sbjct: 78  L---------------SPLKDLTKLEELSVNRNRLK-NLNGIPSA--CLSRLFLDNNEL- 118

Query: 130 AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANST 189
                + L +L  L  L +  N L   I   +  L KL VL L+ N ++      +    
Sbjct: 119 --RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT-NTGG-LTRLK 172

Query: 190 TLTMLSLYDNSLT 202
            +  + L      
Sbjct: 173 KVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 39/252 (15%), Positives = 85/252 (33%), Gaps = 40/252 (15%)

Query: 164 LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN 223
           L       L   S++ ++ S     + +   +  ++++       +  ++ L  L LS N
Sbjct: 18  LANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHN 73

Query: 224 KLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS 283
           ++S            L                 L     L    V+ N L+ ++    + 
Sbjct: 74  QIS-----------DL---------------SPLKDLTKLEELSVNRNRLK-NLNG--IP 104

Query: 284 LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDN 343
              +S + L  N       +++ + +NL  L ++ N++       +     L  +DL  N
Sbjct: 105 SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGN 160

Query: 344 LLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLN-VLDLSNNLLTGYIPESLC 402
            ++     G+  LKK+N + L   K  +        L   N V D     ++ Y   +  
Sbjct: 161 EITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGG 218

Query: 403 ELLPNSINFSNN 414
             +   + +   
Sbjct: 219 SYVDGCVLWELP 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 16/169 (9%)

Query: 257 LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFM 316
                N ++  +    +  +       L  V   +   ++    +A  +    NL EL +
Sbjct: 15  DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQS-LAG-MQFFTNLKELHL 70

Query: 317 QRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNL--LMLQSNKLNSSIP 374
             NQIS   P  +     L ++ ++ N L       +  +    L  L L +N+L     
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNEL-RDTD 122

Query: 375 NSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLS 423
           + L  LK+L +L + NN L   +       L   ++   N ++    L+
Sbjct: 123 S-LIHLKNLEILSIRNNKLKSIVMLGFLSKL-EVLDLHGNEITNTGGLT 169

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 19/195 (9%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
           +L       NL+ L LS+N  +   PL   +LT LE LS N N      +L   +     
Sbjct: 55  SLAGMQFFTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRN------RLKNLNGIPSA 106

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
            L  + L    L  +   S+ ++ +L  L +  N +   I   +G L  L  L+L+ N+ 
Sbjct: 107 CLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEI 162

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVL-QLYNNSLSGEISSVIAN 187
              T    L  L ++  +D++         E +   P+L +   + +          I+N
Sbjct: 163 ---TNTGGLTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGRWISPYYISN 216

Query: 188 STTLTMLSLYDNSLT 202
             +     +      
Sbjct: 217 GGSYVDGCVLWELPV 231

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 10/144 (6%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPIANTV-GNARNLSELFMQRNQISGFIPSEIYRAIS 334
            IPE I    + + + L+ N F+   A  +      L ++    N+I+         A  
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 335 LVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPN-SLSSLKSLNVLDLSNNL 392
           + +I L+ N L   +   +   L+ L  LML+SN++ + + N S   L S+ +L L +N 
Sbjct: 83  VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 393 LTGYIPESLCELLPN--SINFSNN 414
           +T  +     + L +  ++N   N
Sbjct: 141 ITT-VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGL--LKNLRQLELYYNQQLAGTIPEE-LGNL 140
           IP  I       +L L  N  T  +        L  LR++    N+     I E      
Sbjct: 26  IPEHIP--QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGA 80

Query: 141 TELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
           + + ++ ++ N L   +   +   L  L+ L L +N ++   +      +++ +LSLYDN
Sbjct: 81  SGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 200 SLT 202
            +T
Sbjct: 140 QIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 35/163 (21%)

Query: 17  QNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVL 75
           Q    L L+NN FT      +F  L  L  ++F+ N   K+  + E +    +       
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN---KITDIEEGAFEGASG------ 82

Query: 76  ATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIP 134
                             + ++ LT N +   +  ++   L++L+ L L  N ++   + 
Sbjct: 83  ------------------VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSN-RIT-CVG 121

Query: 135 EEL-GNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNN 175
            +    L+ +  L +  N ++  +       L  L  L L  N
Sbjct: 122 NDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 37/164 (22%)

Query: 41  TNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELT 100
                L  N N   +   L  + IF+                        +  L  +  +
Sbjct: 32  QYTAELRLNNN---EFTVLEATGIFK-----------------------KLPQLRKINFS 65

Query: 101 GNFITGHIPPEIGL---LKNLRQLELYYNQQLAGTIPEEL-GNLTELTDLDMSVNHLSGK 156
            N IT  I    G       + ++ L  N+ L   +  ++   L  L  L +  N ++  
Sbjct: 66  NNKIT-DIEE--GAFEGASGVNEILLTSNR-LE-NVQHKMFKGLESLKTLMLRSNRIT-C 119

Query: 157 IPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
           +       L  +R+L LY+N ++           +L+ L+L  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFN-LTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
           F  +  LR+++ SNN  T       F   + +  +    N   +L  +       L  L+
Sbjct: 53  FKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN---RLENVQHKMFKGLESLK 108

Query: 72  IMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYN 126
            ++L +  +   +       ++S+  L L  N IT  + P     L +L  L L  N
Sbjct: 109 TLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 9   TLPD--FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIF 65
            + +  F     +  + L++N         +F  L +L+ L    N   ++  +   S  
Sbjct: 71  DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSN---RITCVGNDSFI 126

Query: 66  RLTKLRIMVLATCALHGQIPASI-GNVTSLTDLELTGN 102
            L+ +R++ L    +   +       + SL+ L L  N
Sbjct: 127 GLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 168 RVLQLYNNSLSG-EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
             L+L NN  +  E + +      L  ++  +N +T          S +  + L+ N+L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 227 GPLPAKVCSR-GKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SL 284
             +  K+      L+  ++  N  + V  DS     ++    + +N +  ++  G   +L
Sbjct: 95  N-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTL 152

Query: 285 PHVSIIDLSYNSF 297
             +S ++L  N F
Sbjct: 153 HSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 325 IPSEIYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSL 383
           IP  I       ++ L++N  +    +GI   L +L  +   +NK+      +      +
Sbjct: 26  IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 384 NVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLS 417
           N + L++N L   +   + + L +  ++   +NR++
Sbjct: 84  NEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT 118

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 14/161 (8%)

Query: 20  RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA 79
            +LDL +         +   LT L  L+ + N   +L  L       LT+L  + LA   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYN---QLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 80  LHGQIPASI-GNVTSLTDLELTGNFITGHIPPEIGL---LKNLRQLELYYNQQLAGTIPE 135
           L   +P  +  ++T L  L L GN +   +P   G+   L  L++L L  NQ  +  IP 
Sbjct: 95  LA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPS--GVFDRLTKLKELRLNTNQLQS--IPA 148

Query: 136 EL-GNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN 175
                LT L  L +S N L      +  RL KL+ + L+ N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 42/148 (28%), Positives = 57/148 (38%), Gaps = 15/148 (10%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL-GNLTE 142
           +P+ I        L+L    +          L  L  L L YNQ    T+   +  +LTE
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTE 84

Query: 143 LTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSL 201
           L  L ++ N L+  +P  +   L +L  L L  N L    S V    T L  L L  N L
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 202 TGEVPQ----DLGQWSPLVVLDLSENKL 225
              +P      L     L  L LS N+L
Sbjct: 144 Q-SIPAGAFDKLTN---LQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 52/205 (25%)

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
                L L    L           + L  L+L  N+L   L A V               
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGV--------------- 78

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNA 308
                 D L     L    ++NN L  S+P G+               F           
Sbjct: 79  -----FDDL---TELGTLGLANNQLA-SLPLGV---------------FDHLT------- 107

Query: 309 RNLSELFMQRNQISGFIPSEIY-RAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQS 366
             L +L++  NQ+   +PS ++ R   L ++ L+ N L   IP+G    L  L  L L +
Sbjct: 108 -QLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLST 164

Query: 367 NKLNSSIPNSLSSLKSLNVLDLSNN 391
           N+L S    +   L  L  + L  N
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 265 RFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGF 324
           +  + +  L          L  ++ ++L YN      A    +   L  L +  NQ++  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 325 IPSEIY-RAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSL-SSLK 381
           +P  ++     L K+ L  N L   +PSG+   L KL  L L +N+L  SIP      L 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLT 155

Query: 382 SLNVLDLSNNLLT 394
           +L  L LS N L 
Sbjct: 156 NLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 9   TLPD--FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIF 65
           TL    F  +  L  L L+NN      PL VF +LT L+ L    N   +L  LP     
Sbjct: 73  TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGN---QLKSLPSGVFD 128

Query: 66  RLTKLRIMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELY 124
           RLTKL+ + L T  L   IPA     +T+L  L L+ N +          L  L+ + L+
Sbjct: 129 RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187

Query: 125 YNQ 127
            NQ
Sbjct: 188 GNQ 190

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 49/342 (14%), Positives = 119/342 (34%), Gaps = 70/342 (20%)

Query: 123 LYYNQQL---AGTIPEELGNLTELTDLDMSVNHLSGKIPESILRL-----PKLRVLQLYN 174
           + Y   L   +  + E       +T LD+S+N+L       +++        +  L L  
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 175 NSLSGEISSVIA-----NSTTLTMLSLYDNSLTGEVPQDLGQW-----SPLVVLDLSENK 224
           NSL  + S  +          +T L+L  N L+ +   +L +        + VLDL  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 225 LSGPLPAKVCSRGKLQYFLVLQNMFSGV--LPDSLARC-KNLLRFRVSNNHL--EG--SI 277
            S                               + +    ++    +  N L  +    +
Sbjct: 121 FSS----------------------KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158

Query: 278 PEGILSLP-HVSIIDLSYNSFSGPIANTVGNA-----RNLSELFMQRNQISGFIPSEIYR 331
            + + ++P +V+ ++L  N+ +      +         +++ L +  N +     +E+  
Sbjct: 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218

Query: 332 AI-----SLVKIDLSDNLLSGP----IPSGIGNLKKLNLLMLQSNKLNS-------SIPN 375
                   +V ++L  N L GP    +     +LK L  + L  + + +       ++  
Sbjct: 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278

Query: 376 SLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLS 417
           +  +++ + ++D +   +       +  L+   ++   +  S
Sbjct: 279 AFPNIQKIILVDKNGKEIHPSHSIPISNLI-RELSGKADVPS 319

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 43/309 (13%), Positives = 94/309 (30%), Gaps = 67/309 (21%)

Query: 17  QNLRRLDLSNNLFT--GQFPLS---VFNLTNLEVLSFNENP-----GFKLWKLPESSIFR 66
             +  LDLS N         L         ++  L+ + N        +L ++  +    
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 67  LTKLRIMVLATCALHGQIPASIGNV-----TSLTDLELTGNFITGHIPPEIGLL-----K 116
           +T L    L+   L  +    +         ++T L+L  N  +     E          
Sbjct: 82  VTSLN---LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 117 NLRQLELYYNQ-------QLAGTIPEELGNLTELTDLDMSVNHLSGK----IPESILRLP 165
           ++  L L  N        +L   +     N+  L   ++  N+L+ K    + + +  +P
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSL---NLRGNNLASKNCAELAKFLASIP 195

Query: 166 K-LRVLQLYNNSLSGEISSVIA-----NSTTLTMLSLYDNSLTGEVPQDLGQW----SPL 215
             +  L L  N L  +  + +A         +  L+L  N L G   ++L         L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 216 VVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEG 275
             + L  + +      +  +                 L  +    + ++    +   +  
Sbjct: 256 QTVYLDYDIVKNMSKEQCKA-----------------LGAAFPNIQKIILVDKNGKEIH- 297

Query: 276 SIPEGILSL 284
             P   + +
Sbjct: 298 --PSHSIPI 304

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 49/256 (19%)

Query: 14  SPMQNLRRLDLSNNLFTGQ------FPLSVFNLTNLEVLSFNENP----GFKLWKLPESS 63
           +   ++  L+LS N    +        L+     N+  L+ + N           L ++ 
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAAIP-ANVTSLNLSGNFLSYKSSDE--LVKTL 104

Query: 64  IFRLTKLRIMVLATCALHGQIPASIGNV-----TSLTDLELTGNFITGHIPPEIGLL--- 115
                 + ++ L       +  +           S+T L L GN +      E+  +   
Sbjct: 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164

Query: 116 --KNLRQLELYYN-------QQLAGTIPEELGNLTELTDLDMSVNHLSGK----IPESIL 162
              N+  L L  N        +LA  +     ++T    LD+S N L  K    +     
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS---LDLSANLLGLKSYAELAYIFS 221

Query: 163 RLP-KLRVLQLYNNSLSGE----ISSVIANSTTLTMLSLYDNSL---TGEVPQDLGQWSP 214
            +P  +  L L  N L G     +  +  +   L  + L  + +   + E  + LG   P
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 215 ----LVVLDLSENKLS 226
               ++++D +  ++ 
Sbjct: 282 NIQKIILVDKNGKEIH 297

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 63.4 bits (153), Expect = 8e-11
 Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 42/205 (20%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQ---- 572
           + F      E +    K+G+G  G V++  +     VA+K +  +   +      +    
Sbjct: 11  VPFSHCLPTEKLQRCEKIGEGVFGEVFQT-IADHTPVAIKIIAIEGPDLVNGSHQKTFEE 69

Query: 573 -----------LQLDKGLKTEVETLGNIRHKNIVK---------LYCYFSSLYCNL---- 608
                        L   +    E    +   + V+          + +++S   +     
Sbjct: 70  ILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRP 129

Query: 609 ---------LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIH 659
                    +V E+   G   D            T   I   +   LA     L     H
Sbjct: 130 DFFKDDQLFIVLEFEFGGI--DLEQMRTKLSSLATAKSILHQLTASLAVAEASL--RFEH 185

Query: 660 RDIKSTNILLDVNYQPKVADFGIAK 684
           RD+   N+LL      K+      K
Sbjct: 186 RDLHWGNVLLKKTSLKKLHYTLNGK 210

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 50/255 (19%), Positives = 90/255 (35%), Gaps = 70/255 (27%)

Query: 519 FDQR-EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
            +    ++  M      G G  G V     +++ +  AVK + + +    ++        
Sbjct: 33  LNNAFLVIRKM------GDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSA-------- 78

Query: 577 KGLKTEVETLGNIRH-----KNIVKLYCYFSSLYCN--LLVYEYMPNGNLWDAL----HK 625
              K E + L  I++      NIVK +  F  +Y +   L++E +   +L++ +    + 
Sbjct: 79  ---KIEADILKKIQNDDINNNNIVKYHGKF--MYYDHMCLIFEPL-GPSLYEIITRNNYN 132

Query: 626 GLVHLDWPTRH--KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL-DVNYQPKVADFGI 682
           G                 + + L YL       + H D+K  NILL D  ++  +     
Sbjct: 133 GF-----HIEDIKLYCIEILKALNYLRK---MSLTHTDLKPENILLDDPYFEKSLITVRR 184

Query: 683 AKVLQARGGKDSTTTVI------AGTYG------------YLAPE----YAYSSKATTKC 720
               +      + +T I        T+             Y APE      +        
Sbjct: 185 VTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWD----VSS 240

Query: 721 DVYSFGVVLMELITG 735
           D++SFG VL EL TG
Sbjct: 241 DMWSFGCVLAELYTG 255

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 108 IPPEIGLLKNLRQLELYYNQQLAGTIPEE-LGNLTELTDLDMSVNHLSGKIPESILRLPK 166
               +   +NL +L +   Q L   +    L  L EL +L +  + L    P++    P+
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 167 LRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT 202
           L  L L  N+L   +S       +L  L L  N L 
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 74  VLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPE-IGLLKNLRQLELYYNQQLAGT 132
           +  T          +    +LT+L +       H+    +  L  LR L +  +  L   
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLR-F 70

Query: 133 IPEE-LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL 177
           +  +       L+ L++S N L   +    ++   L+ L L  N L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 325 IPSEIYRAISLVKIDLSDNLLSGPIPSG-IGNLKKLNLLMLQSNKLNSSIPNSLSSLKSL 383
               +  A +L ++ + +      +    +  L +L  L +  + L    P++      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 384 NVLDLSNNLLTGYIPESLCELLPNSINFSNNRL 416
           + L+LS N L     +++  L    +  S N L
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 2   SFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLP 60
           +      +L      +NL  L + N        L     L  L  L+  ++    L  + 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS---GLRFVA 72

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFIT 105
             +     +L  + L+  AL   +        SL +L L+GN + 
Sbjct: 73  PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 6e-06
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 309 RNLSELFMQRNQISGFIPSE-IYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQS 366
            NL+EL+++  Q    +    +     L  + +  + L   +         +L+ L L  
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF 89

Query: 367 NKLNSSIPNSLSSLKSLNVLDLSNNLLT 394
           N L  S+        SL  L LS N L 
Sbjct: 90  NAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPI-ANTVGNARNLSELFMQRNQISGFIPSEIYRAI- 333
                +    +++ + +        +    +     L  L + ++ +  F+  + +    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 334 SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLN 370
            L +++LS N L   +         L  L+L  N L+
Sbjct: 81  RLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 254 PDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLSYNSFSGPIANTVGNARNLS 312
              L   +NL    + N      +    L  L  +  + +  +       +       LS
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 313 ELFMQRNQISGFIPSEIYRAISLVKIDLSDN 343
            L +  N +   +  +  + +SL ++ LS N
Sbjct: 84  RLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 60/268 (22%), Positives = 94/268 (35%), Gaps = 65/268 (24%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G G  G +Y   D+ +GE VA+K             T   QL      E +    ++ 
Sbjct: 16  KIGSGSFGDIYLGTDIAAGEEVAIKL--------ECVKTKHPQLHI----ESKIYKMMQG 63

Query: 592 -KNIVKLYCYFSSLYCNLLVYEYMPNG-NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
              I  +    +    N++V E +  G +L D  +         T   +A  +   + Y+
Sbjct: 64  GVGIPTIRWCGAEGDYNVMVMELL--GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYI 121

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPK---VADFGIAK---------VLQARGGKDSTTT 697
           H       IHRD+K  N L+ +  +     + DFG+AK          +  R  K+ T T
Sbjct: 122 HS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGT 178

Query: 698 VIAGTYGYLAPEYAYSSKATTKC-------DVYSFGVVLMELITGRKPVEDDFGDNKNII 750
                         Y+S  T          D+ S G VLM    G  P            
Sbjct: 179 AR------------YASINTHLGIEQSRRDDLESLGYVLMYFNLGSLP------------ 214

Query: 751 YWVSIKVDTK-EGIMEVLDKKLSGSFRD 777
            W  +K  TK +    + +KK+S     
Sbjct: 215 -WQGLKAATKRQKYERISEKKMSTPIEV 241

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 65/265 (24%), Positives = 90/265 (33%), Gaps = 79/265 (29%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR- 590
           K+G G   TV+   D+   + VA+K        V  S     +       E+  L ++R 
Sbjct: 44  KLGWGHFSTVWLSWDIQGKKFVAMK--------VVKSAEHYTETAL---DEIRLLKSVRN 92

Query: 591 -------HKNIVKLYCYFS------SLYCNLLVYEYMPNG-NLWDALHKGLVH-LDWPTR 635
                   + +V+L   F       +  C  +V+E +  G +L   + K     L  P  
Sbjct: 93  SDPNDPNREMVVQLLDDFKISGVNGTHIC--MVFEVL--GHHLLKWIIKSNYQGLPLPCV 148

Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN----------------------- 672
            KI   V QGL YLH      IIH DIK  NILL VN                       
Sbjct: 149 KKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPS 206

Query: 673 ------------------YQPKVADFG---IAKVLQARGGKDSTTTVIAGTYGYLAPEYA 711
                              +PK A+     IA +  A       T  I  T  Y + E  
Sbjct: 207 GSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDI-QTRQYRSLEVL 265

Query: 712 YSSKATTKCDVYSFGVVLMELITGR 736
             S   T  D++S   +  EL TG 
Sbjct: 266 IGSGYNTPADIWSTACMAFELATGD 290

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL-GNLTE 142
           +P  I     +T+L L GN  T  +P E+   K+L  ++L  N+    T+  +   N+T+
Sbjct: 25  LPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNR--ISTLSNQSFSNMTQ 79

Query: 143 LTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
           L  L +S N L   IP      L  LR+L L+ N +S        + + L+ L++  N
Sbjct: 80  LLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 119 RQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSL 177
            +L L  NQ     +P+EL N   LT +D+S N +S  +       + +L  L L  N L
Sbjct: 34  TELYLDGNQ--FTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90

Query: 178 SGEISSVIANSTTLTMLSLYDNSL 201
                       +L +LSL+ N +
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 313 ELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNS 371
           EL++  NQ +  +P E+     L  IDLS+N +S  + +    N+ +L  L+L  N+L  
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLRC 92

Query: 372 SIPNSLSSLKSLNVLDLSNNLL 393
             P +   LKSL +L L  N +
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSI 64
            T    + S  ++L  +DLSNN  +       F N+T L  L  + N   +L  +P  + 
Sbjct: 43  FTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN---RLRCIPPRTF 98

Query: 65  FRLTKLRIMVLATCALHGQIPASI-GNVTSLTDLELTGN 102
             L  LR++ L    +   +P     ++++L+ L +  N
Sbjct: 99  DGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.0 bits (139), Expect = 5e-09
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 92  TSLTDLELTGNFITGHIPPEIG--LLKNLRQLELYY--NQQLAGTIPEEL------GNLT 141
            +L  LE+    +   +  +I    L NL +L LY                         
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 142 ELTDLDMSVNHLSGKIPESILR---LPKLRVLQLYNNSLSGE----ISSVIANSTTLTML 194
            L  L +        + E  L    LP+L  + +    L+ E    +   +     L  +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSEN 223
           ++  N L+ E+ ++L +  P + +D+S++
Sbjct: 313 NMKYNYLSDEMKKELQKSLP-MKIDVSDS 340

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.9 bits (123), Expect = 5e-07
 Identities = 26/221 (11%), Positives = 68/221 (30%), Gaps = 21/221 (9%)

Query: 213 SPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNH 272
              +   + ENK        +           +  +    L   L     L   ++    
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT- 182

Query: 273 LEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR--NLSEL---FMQRNQISGFIPS 327
              ++  G    P++  +++        +   +  +   NL +L       +       +
Sbjct: 183 --NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240

Query: 328 EIYRAIS------LVKIDLSDNLLSGPIPSGIGN---LKKLNLLMLQSNKLNSS----IP 374
                 S      L  + + D      +         L +L  + + +  L       + 
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300

Query: 375 NSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNR 415
           + +  +K L  +++  N L+  + + L + LP  I+ S+++
Sbjct: 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 27/198 (13%), Positives = 63/198 (31%), Gaps = 24/198 (12%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTN----LEVLSFNENPGFKLWKLPESSIFRLT 68
                +   L   +  F  +  +S     +    L+ +    N   K             
Sbjct: 135 KEKFAHFEGLFWGDIDFE-EQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRP 193

Query: 69  KLRIMVLATCALHGQIPASIG--NVTSLTDLEL---TGNFITGHIPPEI------GLLKN 117
            L+ + + +  L   +   I   ++ +L  L L     ++                   N
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253

Query: 118 LRQLELYYNQQLAGTIPEELGN---LTELTDLDMSVNHLSGK----IPESILRLPKLRVL 170
           L+ L +   +     + E       L +L  +D+S   L+ +    + + + ++  L+ +
Sbjct: 254 LKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 171 QLYNNSLSGEISSVIANS 188
            +  N LS E+   +  S
Sbjct: 313 NMKYNYLSDEMKKELQKS 330

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 54/271 (19%), Positives = 93/271 (34%), Gaps = 69/271 (25%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G+G  G +++  +L + + VA+K    +R+               L+ E  T   +  
Sbjct: 17  RIGEGSFGVIFEGTNLLNNQQVAIKFE-PRRSDAP-----------QLRDEYRTYKLLAG 64

Query: 592 -KNIVKLYCYFSSLYCNLLVYEYMPNG-NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
              I  +Y +      N+LV + +  G +L D L          T    A  +   +  +
Sbjct: 65  CTGIPNVYYFGQEGLHNVLVIDLL--GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSI 122

Query: 650 H-HGLLSPIIHRDIKSTNILLDVNYQPK-----VADFGIAKV---------LQARGGKDS 694
           H       +++RDIK  N L+            V DFG+ K          +  R  K+ 
Sbjct: 123 HEKS----LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNL 178

Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKC-------DVYSFGVVLMELITGRKPVEDDFGDNK 747
           + T              Y S  T          D+ + G V M  + G  P         
Sbjct: 179 SGTAR------------YMSINTHLGREQSRRDDLEALGHVFMYFLRGSLP--------- 217

Query: 748 NIIYWVSIKVDTKEGIME-VLDKKLSGSFRD 777
               W  +K  T +   E + +KK S   R+
Sbjct: 218 ----WQGLKAATNKQKYERIGEKKQSTPLRE 244

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 44/241 (18%), Positives = 83/241 (34%), Gaps = 55/241 (22%)

Query: 523 EILEAMTEKNKVGQGGSGTVYK-IDLNSG-EVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           EI+  +      G+G  G V + +D   G   VA+K + +      A+           +
Sbjct: 22  EIVGNL------GEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAA-----------R 64

Query: 581 TEVETLGNIRHK------NIVKLYCYFSSLYCN--LLVYEYMPNGNLWDALHK-GLVHLD 631
            E+  L  I+ K        V +  +F   +     + +E +   N ++ L +       
Sbjct: 65  LEINVLKKIKEKDKENKFLCVLMSDWF--NFHGHMCIAFELL-GKNTFEFLKENNFQPYP 121

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
            P    +A+ +   L +LH    + + H D+K  NIL   +    + +   +   ++   
Sbjct: 122 LPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKN 178

Query: 692 KD-------STTTVIAGTYGYL------APE----YAYSSKATTKCDVYSFGVVLMELIT 734
                    S T         +       PE      ++      CDV+S G +L E   
Sbjct: 179 TSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWA----QPCDVWSIGCILFEYYR 234

Query: 735 G 735
           G
Sbjct: 235 G 235

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 92  TSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEEL-GNLTELTDLDMS 149
            +L +L L  N +   +P  +   L  L  L+L  NQ     +P  +   L  L +L M 
Sbjct: 64  INLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLVHLKELFMC 120

Query: 150 VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
            N L+ ++P  I RL  L  L L  N L           ++LT   L+ N
Sbjct: 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 37/160 (23%)

Query: 20  RRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIF-RLTKLRIMVLAT 77
           + L L +N  T +    VF +L NL+ L    N   +L  LP   +F  LT+        
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSN---QLGALP-VGVFDSLTQ-------- 89

Query: 78  CALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQQLAGTIPEE 136
                           LT L+L  N +T  +P  +   L +L++L +  N+     +P  
Sbjct: 90  ----------------LTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNK--LTELPRG 130

Query: 137 LGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNN 175
           +  LT LT L +  N L   IP     RL  L    L+ N
Sbjct: 131 IERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL-GNLTE 142
           +PA I   T+   L L  N IT   P     L NL++L L  N QL   +P  +  +LT+
Sbjct: 34  VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLG-ALPVGVFDSLTQ 89

Query: 143 LTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSL 201
           LT LD+  N L+  +P ++  RL  L+ L +  N L+ E+   I   T LT L+L  N L
Sbjct: 90  LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIY-RAIS 334
           S+P GI +  +  I+ L  N  +        +  NL EL++  NQ+   +P  ++     
Sbjct: 33  SVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 335 LVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLL 393
           L  +DL  N L+  +PS +   L  L  L +  NKL + +P  +  L  L  L L  N L
Sbjct: 90  LTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 310 NLSELFMQRNQISGFIPSEIY-RAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK 368
            L+ L +  NQ++  +PS ++ R + L ++ +  N L+  +P GI  L  L  L L  N+
Sbjct: 89  QLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQ 146

Query: 369 LNSSIPNSLSSLKSLNVLDLSNN 391
           L S    +   L SL    L  N
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 168 RVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT---GEVPQDLGQWSPLVVLDLSENK 224
           ++L L++N ++     V  +   L  L L  N L      V   L Q   L VLDL  N+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ---LTVLDLGTNQ 99

Query: 225 LSGPLPAKVCSR-GKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEG 280
           L+  LP+ V  R   L+   +  N  +  LP  + R  +L    +  N L+ SIP G
Sbjct: 100 LTV-LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHG 153

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 9   TLPD--FSPMQNLRRLDLSNNLFTGQFPLSVFN-LTNLEVLSFNENPGFKLWKLPESSIF 65
            LP   F  +  L  LDL  N  T   P +VF+ L +L+ L    N   KL +LP   I 
Sbjct: 78  ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCN---KLTELPR-GIE 132

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGN 102
           RLT L  + L    L      +   ++SLT   L GN
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 58/268 (21%), Positives = 97/268 (36%), Gaps = 65/268 (24%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR- 590
           K+G G  G +Y   ++ + E VA+K             T   QL      E +    ++ 
Sbjct: 14  KIGSGSFGEIYLGTNIQTNEEVAIKLENV--------KTKHPQLLY----ESKIYRILQG 61

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNG-NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
              I  +  +      N+LV + +  G +L D  +     L   T   +A  +   + ++
Sbjct: 62  GTGIPNVRWFGVEGDYNVLVMDLL--GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFV 119

Query: 650 HHGLLSPIIHRDIKSTNILLDVNYQPK---VADFGIAKV---------LQARGGKDSTTT 697
           H       +HRDIK  N L+ +  +     + DFG+AK          +  R  K+ T T
Sbjct: 120 HS---KSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGT 176

Query: 698 VIAGTYGYLAPEYAYSSKATTKC-------DVYSFGVVLMELITGRKPVEDDFGDNKNII 750
                         Y+S  T          D+ S G VLM  + G  P            
Sbjct: 177 AR------------YASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLP------------ 212

Query: 751 YWVSIKVDTK-EGIMEVLDKKLSGSFRD 777
            W  +K  TK +   ++ +KK++ S   
Sbjct: 213 -WQGLKAGTKKQKYEKISEKKVATSIEA 239

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 65/246 (26%)

Query: 523 EILEAMTEKNKVGQGGSGTVYK-IDLNSG-EVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           EI++ +      G+G  G V + ID  +G   VAVK + +      A+           +
Sbjct: 17  EIVDTL------GEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAA-----------R 59

Query: 581 TEVETLGNIRHK------NIVKLYCYFSSLYCN--LLVYEYMPNGNLWDAL----HKGLV 628
           +E++ L ++           V++  +F   +     +V+E +   + +D +         
Sbjct: 60  SEIQVLEHLNTTDPNSTFRCVQMLEWF--EHHGHICIVFELL-GLSTYDFIKENGFLPF- 115

Query: 629 HLDWPTRH--KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL 686
                  H  K+A+ + + + +LH    + + H D+K  NIL   +   +  +  I +  
Sbjct: 116 ----RLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEAYNPKIKRDE 168

Query: 687 QARGGKD-------STTTVIAGTYGYL------APE----YAYSSKATTKCDVYSFGVVL 729
           +     D       S T         +      APE      +S      CDV+S G +L
Sbjct: 169 RTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWS----QPCDVWSIGCIL 224

Query: 730 MELITG 735
           +E   G
Sbjct: 225 IEYYLG 230

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 9/120 (7%)

Query: 276 SIPEGILSLP-HVSIIDLSYNSFSGPIANTV-GNARNLSELFMQRNQISGFIPSEIYRAI 333
            IP  I   P H + + L+ N      ++ + G   +L +L ++RNQ++G  P+    A 
Sbjct: 22  EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78

Query: 334 SLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPN-SLSSLKSLNVLDLSNN 391
            + ++ L +N +   I + +   L +L  L L  N++ S +   S   L SL  L+L++N
Sbjct: 79  HIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGL--LKNLRQLELYYNQQLAGTIPEEL-GNL 140
           IP  I      T+L L  N +   I  +     L +L +LEL  NQ     I        
Sbjct: 23  IPRDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQ--LTGIEPNAFEGA 77

Query: 141 TELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
           + + +L +  N +  +I   +   L +L+ L LY+N +S  +     +  +LT L+L  N
Sbjct: 78  SHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 119 RQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSL 177
            +L L  N+    +     G L  L  L++  N L+  I  +       ++ LQL  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 178 SGEISSVIANSTTLTMLSLYDNSLT 202
               + +      L  L+LYDN ++
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 313 ELFMQRNQISGFIPSEIY-RAISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLN 370
           EL +  N++       ++ R   LVK++L  N L+G I          +  L L  NK+ 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI- 90

Query: 371 SSIPNSL-SSLKSLNVLDLSNNLLTGYIPE 399
             I N +   L  L  L+L +N ++  +  
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISC-VMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLR 71
           F  + +L +L+L  N  TG    + F   ++++ L   EN   K+ ++       L +L+
Sbjct: 50  FGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGEN---KIKEISNKMFLGLHQLK 105

Query: 72  IMVLATCALHGQIPASIGNVTSLTDLELTGN 102
            + L    +   +P S  ++ SLT L L  N
Sbjct: 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 53/266 (19%), Positives = 87/266 (32%), Gaps = 69/266 (25%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G G  G +    +L + E VA+K L   +++              L  E      +  
Sbjct: 16  KIGCGNFGELRLGKNLYTNEYVAIK-LEPMKSRAP-----------QLHLEYRFYKQLGS 63

Query: 592 -KNIVKLYCYFSSLYCNLLVYEYMPNG-NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
              I ++Y +      N +V E +  G +L D            T   IA  +   + Y+
Sbjct: 64  GDGIPQVYYFGPCGKYNAMVLELL--GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYV 121

Query: 650 H-HGLLSPIIHRDIKSTNILLDVNYQPK-----VADFGIAK---------VLQARGGKDS 694
           H       +I+RD+K  N L+            + DF +AK          +  R  K  
Sbjct: 122 HSKN----LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSL 177

Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKC-------DVYSFGVVLMELITGRKPVEDDFGDNK 747
           T T              Y S  T          D+ + G + M  + G  P         
Sbjct: 178 TGTAR------------YMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLP--------- 216

Query: 748 NIIYWVSIKVDTKEGIME-VLDKKLS 772
               W  +K DT +   + + D K +
Sbjct: 217 ----WQGLKADTLKERYQKIGDTKRA 238

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 115 LKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN 174
                ++EL+        +   L  L     L +S N++  KI  S+  +  LR+L L  
Sbjct: 22  ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGR 79

Query: 175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
           N +  +I ++ A + TL  L +  N +       + +   L VL +S NK++
Sbjct: 80  NLIK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 17/131 (12%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEI-GL--LKNLRQLELYYNQQLAGTIPEELGNL 140
           + A++  + +   L L+ N I      +I  L  ++NLR L L  N        E L  +
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLI---KKIENLDAV 91

Query: 141 TE-LTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV--IANSTTLTMLSLY 197
            + L +L +S N ++  +   I +L  LRVL + NN ++     +  +A    L  L L 
Sbjct: 92  ADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLA 148

Query: 198 DNSLTGEVPQD 208
            N L  +  ++
Sbjct: 149 GNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 21/174 (12%)

Query: 260 CKNLLRFRVSNNHLEGSIPEGI-LSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQR 318
            K+ +R       +  +  E + L      I  +            +   +    L +  
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT---------LSTLKACKHLALST 57

Query: 319 NQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLS 378
           N I     S +    +L  + L  NL+   I +       L  L +  N++ +S+   + 
Sbjct: 58  NNIEKI--SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQI-ASLSG-IE 112

Query: 379 SLKSLNVLDLSNNLLTGYIPESLCEL--LPN--SINFSNNRLSGPIPLSLIKEG 428
            L +L VL +SNN +T +    + +L  L     +  + N L      +     
Sbjct: 113 KLVNLRVLYMSNNKITNW--GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 94  LTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP--EELGNLTELTDLDMSVN 151
             +L      I   +   +  LK  + L L  N      I     L  +  L  L +  N
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNN-----IEKISSLSGMENLRILSLGRN 80

Query: 152 HLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT--GEVPQDL 209
            +  KI         L  L +  N ++  +S  I     L +L + +N +T  GE+   L
Sbjct: 81  LIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEI-DKL 136

Query: 210 GQWSPLVVLDLSENKLS 226
                L  L L+ N L 
Sbjct: 137 AALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 32/165 (19%), Positives = 52/165 (31%), Gaps = 39/165 (23%)

Query: 21  RLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCAL 80
            L             ++  L   + L+ + N               + K+          
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTN--------------NIEKIS--------- 64

Query: 81  HGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ--QLAGTIPEELG 138
                 S+  + +L  L L  N I   I     +   L +L + YNQ   L+G     + 
Sbjct: 65  ------SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-----IE 112

Query: 139 NLTELTDLDMSVNHLSG-KIPESILRLPKLRVLQLYNNSLSGEIS 182
            L  L  L MS N ++     + +  L KL  L L  N L  +  
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 42/167 (25%)

Query: 14  SPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIM 73
           S ++  + L LS N       LS   + NL +LS   N               + K    
Sbjct: 45  STLKACKHLALSTNNIEKISSLS--GMENLRILSLGRN--------------LIKK---- 84

Query: 74  VLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTI 133
                     I        +L +L ++ N I   +   I  L NLR L +  N+      
Sbjct: 85  ----------IENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGE 132

Query: 134 PEELGNLTELTDLDMSVNHLSGKIPES----------ILRLPKLRVL 170
            ++L  L +L DL ++ N L     E+          + RLP L+ L
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 49/279 (17%), Positives = 86/279 (30%), Gaps = 67/279 (24%)

Query: 533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL---------DKGLKTEV 583
            +GQGG G +Y  D+NS E V          KV  SD   L                 + 
Sbjct: 42  PIGQGGFGCIYLADMNSSESVGSDAPC--VVKVEPSDNGPLFTELKFYQRAAKPEQIQKW 99

Query: 584 ETLGNIRHKNIVKLYCY----FSSLYCNLLVYEYMPNG-NLWDALHKGLVHLDWPTRHKI 638
                +++  + K +       +      ++ +    G +L              T  ++
Sbjct: 100 IRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF--GSDLQKIYEANAKRFSRKTVLQL 157

Query: 639 AFGVAQGLAYLH-HGLLSPIIHRDIKSTNILLDVNYQPKV--ADFGIAKVLQARGGKDST 695
           +  +   L Y+H H      +H DIK++N+LL+     +V   D+G+A            
Sbjct: 158 SLRILDILEYIHEHEY----VHGDIKASNLLLNYKNPDQVYLVDYGLAYRY-----CPEG 208

Query: 696 TTV---------IAGTYGYLAPEYAYSSKATTKC-------DVYSFGVVLMELITGRKPV 739
                         GT      E+   S             D+   G  +++ +TG  P 
Sbjct: 209 VHKAYAADPKRCHDGT-----IEFT--SIDAHNGVAPSRRGDLEILGYCMIQWLTGHLP- 260

Query: 740 EDDFGDNKNIIYWVSIKVDTK-EGIMEVLDKKLSGSFRD 777
                       W     D K     ++  ++   S  D
Sbjct: 261 ------------WEDNLKDPKYVRDSKIRYRENIASLMD 287

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 90  NVTSLTDLELTGNFIT-GHIPPEIGLLKNLRQLELYYNQ--QLAGTIPEELGNLTELTDL 146
              ++ +L L       G I        NL  L L       ++      L  L +L  L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----LPKLPKLKKL 76

Query: 147 DMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV--IANSTTLTMLSLYDNSLT 202
           ++S N + G +     +LP L  L L  N L  +IS++  +     L  L L++  +T
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 334 SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLL 393
           +L  + L +  L     S +  L KL  L L  N++   +      L +L  L+LS N L
Sbjct: 50  NLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 394 T 394
            
Sbjct: 108 K 108

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGN-LTE 142
           +P  I      T L+L  N +          L +L QL L  N +L  ++P  + N LT 
Sbjct: 22  VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQ-SLPNGVFNKLTS 77

Query: 143 LTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSL 201
           LT L++S N L   +P  +  +L +L+ L L  N L      V    T L  L LY N L
Sbjct: 78  LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIY-RAIS 334
           S+P GI +    + +DL  NS             +L++L++  N++   +P+ ++ +  S
Sbjct: 21  SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 335 LVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSL-SSLKSLNVLDLSNNL 392
           L  ++LS N L   +P+G+   L +L  L L +N+L  S+P+ +   L  L  L L  N 
Sbjct: 78  LTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQ 135

Query: 393 L 393
           L
Sbjct: 136 L 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 9   TLPD--FSPMQNLRRLDLSNNLFTGQFPLSVFN-LTNLEVLSFNENPGFKLWKLPESSIF 65
           +LP+  F+ + +L  L+LS N      P  VF+ LT L+ L+ N N   +L  LP+    
Sbjct: 66  SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTN---QLQSLPDGVFD 121

Query: 66  RLTKLRIMVLATCALHGQIPASI-GNVTSLTDLELTGN 102
           +LT+L+ + L    L   +P  +   +TSL  + L  N
Sbjct: 122 KLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 168 RVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDL-GQWSPLVVLDLSENKLS 226
             L L  NSL    + V    T+LT L L  N L   +P  +  + + L  L+LS N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 227 GPLPAKVCSR-GKLQYFLVLQNMFSGVLP----DSLARCKNLLRFRVSNNHLEGSIPEGI 281
             LP  V  +  +L+   +  N     LP    D L     L   R+  N L+ S+P+G+
Sbjct: 90  S-LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLT---QLKDLRLYQNQLK-SVPDGV 143

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 307 NARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS 366
           NA    EL ++  +I   I +          ID SDN +   +  G   L++L  L++ +
Sbjct: 17  NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73

Query: 367 NKLNSSIPNSLSSLKSLNVLDLSNNLLT 394
           N++         +L  L  L L+NN L 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 11/117 (9%)

Query: 90  NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP--EELGNLTELTDLD 147
           N     +L+L G  I   I      L     ++   N+     I   +    L  L  L 
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-----IRKLDGFPLLRRLKTLL 70

Query: 148 MSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV--IANSTTLTMLSLYDNSLT 202
           ++ N +          LP L  L L NNSL  E+  +  +A+  +LT L +  N +T
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 11/130 (8%)

Query: 97  LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELG-NLTELTDLDMSVNHLSG 155
           ++LT   I      +       R+L+L   +     + E LG  L +   +D S N +  
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIR- 55

Query: 156 KIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT--GEVPQDLGQWS 213
           K+ +    L +L+ L + NN +      +      LT L L +NSL   G++   L    
Sbjct: 56  KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLK 113

Query: 214 PLVVLDLSEN 223
            L  L +  N
Sbjct: 114 SLTYLCILRN 123

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEEL-GNLTE 142
           +P  I   +S T LEL  N +          L  L +L L  NQ    ++P+ +   LT+
Sbjct: 22  VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQSLPDGVFDKLTK 77

Query: 143 LTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
           LT L +  N L   +P  +  +L +L+ L L  N L      +    T+L  + L+ N
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 276 SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIY-RAIS 334
           S+P GI S    + ++L  N               L++L + +NQI   +P  ++ +   
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 335 LVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN 391
           L  + L +N L   +P+G+   L +L  L L +N+L S        L SL  + L  N
Sbjct: 78  LTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 90  NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLE-LYYNQQLAGTIPEELGNLTELTDLDM 148
             + + +L L  +          GL     +LE L        +I   L  L +L  L++
Sbjct: 15  TPSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLEL 71

Query: 149 SVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV--IANSTTLTMLSLYDNSLT 202
           S N +SG +     + P L  L L  N +  ++S++  +     L  L L++  +T
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 307 NARNLSELFMQRNQIS-GFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQ 365
              ++ EL +  ++ + G +         L  +   +  L+    + +  L KL  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 366 SNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL--LPN--SINFSNN 414
            N+++  +        +L  L+LS N +      ++  L  L N  S++  N 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 26/112 (23%)

Query: 115 LKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN 174
             ++++L L  ++   G +        EL  L      L+  I  ++ +L KL+ L+L +
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
           N +SG +  +      LT                         L+LS NK+ 
Sbjct: 74  NRVSGGLEVLAEKCPNLT------------------------HLNLSGNKIK 101

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 28/169 (16%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQL--------QLDKGLKTEV 583
           K+G GG G +Y     N  E  A   +     KV   +   L        ++ K    + 
Sbjct: 44  KIGSGGFGLIYLAFPTNKPEKDARHVV-----KVEYQENGPLFSELKFYQRVAKKDCIKK 98

Query: 584 -ETLGNIRHKNIVKLYCYFSSLYC----NLLVYEYMPNG-NLWDALHKGLVHLDWPTRHK 637
                 + +  I   Y    + +       +V E +  G +L   +          T  +
Sbjct: 99  WIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL--GIDLQK-ISGQNGTFKKSTVLQ 155

Query: 638 IAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV--ADFGIAK 684
           +   +   L Y+H    +  +H DIK+ N+LL      +V  AD+G++ 
Sbjct: 156 LGIRMLDVLEYIHE---NEYVHGDIKAANLLLGYKNPDQVYLADYGLSY 201

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 59/314 (18%), Positives = 108/314 (34%), Gaps = 68/314 (21%)

Query: 92  TSLTDLELTGNFITGHIPPEIGLL--------KNLRQLELYYNQQLAGTIPEE-----LG 138
           +SL  L L G  +T   P +  ++          L ++ L   Q     +        L 
Sbjct: 72  SSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASCQ-----LDPAGLRTLLP 123

Query: 139 NLTELTDLDMSVNHLSGKIPESI---LRLPK--LRVLQLYNNSLSGE----ISSVIANST 189
                  L + +N L  +  + +   L   +  +  L+L NN L+      +   +A +T
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 190 TLTMLSLYDNSLTGEVPQDLGQW----SPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
           ++T LSL    L  E  + L         L  L+++ N   G   A              
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAAL------------- 229

Query: 246 QNMFSGVLPDSLARCKNLLRFRVSNNHL--EG--SIPEGILSLPHVSIIDLSYNSFSGPI 301
                  L  +     +L    +  N L  EG   + +   +    + + +S    +   
Sbjct: 230 ------ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT--- 280

Query: 302 ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN- 360
           A +   +  LSE  +QRN  S +  + + R + L+  DL D+  +   P     L ++  
Sbjct: 281 AVSEYWSVILSE--VQRNLNS-WDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEG 337

Query: 361 ---LLMLQSNKLNS 371
               L+ Q     S
Sbjct: 338 EVRALLEQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 46/336 (13%), Positives = 94/336 (27%), Gaps = 85/336 (25%)

Query: 16  MQNLRRLDLSNNLFTGQFPLSVFNLTNL-EVLSFNENPGFKLWKLPESSIFRLTKLRIMV 74
           + +LR+L+L+         ++    T +  VL                            
Sbjct: 71  LSSLRQLNLAGV------RMTPVKCTVVAAVLGSGR------------------------ 100

Query: 75  LATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGL------LKNLRQLELYYNQ- 127
                             +L ++ L    +        GL          R+L L  N  
Sbjct: 101 -----------------HALDEVNLASCQLD-----PAGLRTLLPVFLRARKLGLQLNSL 138

Query: 128 --QLAGTIPEEL-GNLTELTDLDMSVNHLSGK----IPESILRLPKLRVLQLYNNSLSGE 180
             +    + + L  +  ++T L +S N L+      + E +     +  L L +  L  E
Sbjct: 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE 198

Query: 181 ----ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQW----SPLVVLDLSENKLSGPLPAK 232
               +++ +  +  L  L++  N         L +       L +L L  N+L      +
Sbjct: 199 GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL-SSEGRQ 257

Query: 233 V--CSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSII 290
           V     G  +    +    +     S      L   + + N  + +  +  L L    + 
Sbjct: 258 VLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLEL---LLR 314

Query: 291 DLSYNSFSGPIANTVGNA----RNLSELFMQRNQIS 322
           DL  +  +                +  L  Q     
Sbjct: 315 DLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 48/351 (13%), Positives = 98/351 (27%), Gaps = 62/351 (17%)

Query: 121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGE 180
           L   +N+ +   +   + NL  L +       L     + +     L  L  +       
Sbjct: 6   LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEF--QN 63

Query: 181 ISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ-----WSPLVVLDLSENKLSGPLPAKVCS 235
                   ++L  L+L    +T      +          L  ++L+  +L          
Sbjct: 64  QRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD----PAGLR 119

Query: 236 RGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGI------LSLPHVSI 289
                            L     R + L    +  N L    PE        L      I
Sbjct: 120 T----------------LLPVFLRARKL---GLQLNSLG---PEACKDLRDLLLHDQCQI 157

Query: 290 --IDLSYNSFSGP----IANTVGNARNLSELFMQRNQIS----GFIPSEIYRAISLVKID 339
             + LS N  +      +   +    +++ L +    +       + +++ R   L +++
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 340 LSDNLLSGP----IPSGIGNLKKLNLLMLQSNKLN-------SSIPNSLSSLKSLNVLDL 388
           ++ N         +         L LL L  N+L+         +  +      + V   
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277

Query: 389 SNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGL 439
               ++ Y    L E+  N    S +R      L L+   L +S       
Sbjct: 278 EGTAVSEYWSVILSEVQRN--LNSWDRARVQRHLELLLRDLEDSRGATLNP 326

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 42/271 (15%), Positives = 86/271 (31%), Gaps = 53/271 (19%)

Query: 532 NKVGQGGSGTVYK-IDLNSG--------EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTE 582
           +   +   G +Y+    ++         +  ++K L ++  ++        +  K L+  
Sbjct: 48  SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLK-LDAKDGRLFNEQNFFQRAAKPLQVN 106

Query: 583 VE-TLGNIRHKNIVKLYCYFSSLY-CNLLVYEYMPNG-NLWDALHK-GLVHLDWPTRHKI 638
               L +     I     +         LV   +  G +L  AL       L   +  ++
Sbjct: 107 KWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL--GRSLQSALDVSPKHVLSERSVLQV 164

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV--ADFGIAKVLQARGG----K 692
           A  +   L +LH    +  +H ++ + NI +D   Q +V  A +G A      G      
Sbjct: 165 ACRLLDALEFLHE---NEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYV 221

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKC-------DVYSFGVVLMELITGRKPVEDDFGD 745
           + + +   G       E+   S    K        D+ S G  +++ + G  P       
Sbjct: 222 EGSRSPHEGD-----LEFI--SMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLP------- 267

Query: 746 NKNIIYWVSIKVDT-KEGIMEVLDKKLSGSF 775
                 W +   +T      +       G F
Sbjct: 268 ------WTNCLPNTEDIMKQKQKFVDKPGPF 292

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 17/99 (17%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGL---LKNLRQLELYYNQQLAGTIPEELG-- 138
           +PA I   T    L L  N IT  + P  G+   L NL+QL    N+  A  IP   G  
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITK-LEP--GVFDHLVNLQQLYFNSNKLTA--IPT--GVF 77

Query: 139 -NLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNN 175
             LT+LT LD++ NHL   IP      L  L  + LYNN
Sbjct: 78  DKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 108 IPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPK 166
           +P  I    + ++L L  NQ +    P    +L  L  L  + N L+  IP  +  +L +
Sbjct: 27  VPAGI--PTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQ 82

Query: 167 LRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN 199
           L  L L +N L         N  +LT + LY+N
Sbjct: 83  LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 17/99 (17%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGL---LKNLRQLELYYNQQLAGTIPEELG-- 138
           +P  I   T+   L L  N IT  + P  G+   L  L +L+L  NQ     +P   G  
Sbjct: 24  VPTGI--PTTTQVLYLYDNQITK-LEP--GVFDRLTQLTRLDLDNNQLTV--LPA--GVF 74

Query: 139 -NLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNN 175
             LT+LT L ++ N L   IP      L  L  + L NN
Sbjct: 75  DKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 113 GLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESIL-RLPKLRVLQ 171
           G+    + L LY NQ +    P     LT+LT LD+  N L+  +P  +  +L +L  L 
Sbjct: 27  GIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS 84

Query: 172 LYNNSLSGEISSVIANSTTLTMLSLYDN 199
           L +N L         N  +LT + L +N
Sbjct: 85  LNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 32/240 (13%)

Query: 59  LPESSIFRLTKLRIMVLATCALH-GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKN 117
            P +  F   +++ M L+   +    +   +   + L +L L G  ++  I   +    N
Sbjct: 84  QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143

Query: 118 LRQLELYYNQQL-AGTIPEELGNLTELTDLDMS-VNHLSGKIPESILR--LPKLRVLQL- 172
           L +L L          +   L + + L +L++S     + K  +  +      +  L L 
Sbjct: 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 173 -YNNSLSGE-ISSVIANSTTLTMLSLYD-NSLTGEVPQDLGQWSPLVVLDLSENKLSGPL 229
            Y  +L    +S+++     L  L L D   L  +  Q+  Q + L  L LS        
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR------- 256

Query: 230 PAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSI 289
               C                      L     L   +V     +G++     +LPH+ I
Sbjct: 257 ----CYD------------IIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 300

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 38/245 (15%), Positives = 74/245 (30%), Gaps = 38/245 (15%)

Query: 13  FSPMQNLRRLDLSN-NLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRL---- 67
           F     +R+LDL    L T      +    NLEVL            + +  +  L    
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET-------RNVIGDRGLEVLAQYC 341

Query: 68  TKLRIMVLATCALHGQIPASIGNVT------------SLTDLELTGNFIT----GHIPPE 111
            +L+ + +   A    +    G V+             L  + +  + IT      I   
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 112 IGLLKNLRQLELYYNQQLAGTIPEE-----LGNLTELTDLDMSVN--HLSGKIPESILRL 164
           +  L + R + L   +++     +      L    +L      +    L+      I + 
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 165 -PKLRVLQLYNNSLSGE-ISSVIANSTTLTMLSLYDNSLTGE-VPQDLGQWSPLVVLDLS 221
            P +R + L     S E +         L  L +     +   +   + +   L  L + 
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

Query: 222 ENKLS 226
             + S
Sbjct: 522 GYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 52/428 (12%), Positives = 114/428 (26%), Gaps = 67/428 (15%)

Query: 18  NLRRLDLSNNLFT--GQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVL 75
            L+ +     + +      L+     +LE L  ++  GF         +  +        
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT-----TDGLLSIVT------ 161

Query: 76  ATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLL----KNLRQLELYYNQQLAG 131
                         +   +  L +  +  +      +  L     +L  L  Y  +    
Sbjct: 162 --------------HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI 207

Query: 132 T---IPEELGNLTELTDLDMS-VNHLSGKIPESIL-RLPKLRVLQLYNNSLSGEISSVIA 186
           +   +     N   L  + +     L           L +     L  +    E    + 
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267

Query: 187 NSTTLTMLSLYDNSLTGEVPQDLGQWSP-LVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
               L  L L    +       L  ++  +  LDL    L       +  +      L  
Sbjct: 268 FPRKLCRLGLSY--MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325

Query: 246 QNMFSGVLPDSLAR-CKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
           +N+      + LA+ CK L R R+     E  + +    +    +I L+           
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG--------- 376

Query: 305 VGNARNLSELFMQRNQISGFIPSEIYRA------ISLVKIDLSDNLLSGPIPSGIG---- 354
               + L  + +  + I+      I           LV +D  + +   P+ +G+     
Sbjct: 377 ---CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433

Query: 355 ---NLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SI 409
               L++    + Q    +  +        ++  + L     +           PN   +
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 410 NFSNNRLS 417
                  S
Sbjct: 494 EMRGCCFS 501

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 37/270 (13%), Positives = 87/270 (32%), Gaps = 23/270 (8%)

Query: 143 LTDLDMSVNHLSGKIPESILRL----PKLRVLQLYNNSLSGE-ISSVIANSTTLTMLSLY 197
             D ++  +   G +   I  +      L  ++L    ++ + +  +  +     +L L 
Sbjct: 79  FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138

Query: 198 D-NSLTGEVPQDLGQWSP-LVVLDLSENKLSGP----LPAKVCSRGKLQYFLVLQNMFSG 251
                + +    +      L  LDL E+ +       L     +   L   L +  + S 
Sbjct: 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS-LNISCLASE 197

Query: 252 VLPDSL----ARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSY------NSFSGPI 301
           V   +L     RC NL   +++       +   +   P +  +                +
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257

Query: 302 ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSD-NLLSGPIPSGIGNLKKLN 360
           +  +   + L  L    + +  ++P+       L  ++LS   + S  +   +    KL 
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317

Query: 361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSN 390
            L +     ++ +    S+ K L  L +  
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 65/415 (15%), Positives = 142/415 (34%), Gaps = 64/415 (15%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF----NLTNLEVLSFNENPGFKLWKLPESSIFRLTK---- 69
           NL+ LDL  +         +       T+L  L+ +        ++  S++ RL      
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS----EVSFSALERLVTRCPN 212

Query: 70  LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGL------LKNLRQLEL 123
           L+ + L       ++   +     L +L   G           GL       K LR L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 124 YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILR-LPKLRVLQLYNNSLSGEIS 182
           +++   A  +P      + LT L++S   +       +L   PKL+ L + +      + 
Sbjct: 273 FWDAVPAY-LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE 331

Query: 183 SVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYF 242
            + +    L  L ++ +       +       + + +     +S   P       KL+  
Sbjct: 332 VLASTCKDLRELRVFPS-------EPFVMEPNVALTEQGLVSVSMGCP-------KLESV 377

Query: 243 LVLQNMFSGVLPDSLAR-CKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI 301
           L      +     ++AR   N+ RFR+        I         +  +D+         
Sbjct: 378 LYFCRQMTNAALITIARNRPNMTRFRLC------IIEPKAPDYLTLEPLDIG-------F 424

Query: 302 ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGP---------IPSG 352
              V + ++L  L      +SG +  +++  I      +    ++           + SG
Sbjct: 425 GAIVEHCKDLRRL-----SLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479

Query: 353 IGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN 407
             +L+KL +        + ++  + S L+++  L +S+  ++    + L + +P 
Sbjct: 480 CDSLRKLEI--RDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPK 532

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	840
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.12
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.9
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.87
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.74
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.26
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.25
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.18
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.08
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.81
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.65
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.22
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.21
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.07
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.07
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.04
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.9
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.87
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.64
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.58
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.55
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.54
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.34
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	96.22
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	95.88
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.7
3mes_A	424	Choline kinase; malaria, structural genomics, stru	95.19
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	92.42
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	83.57

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.1e-57  Score=539.12  Aligned_cols=437  Identities=35%  Similarity=0.525  Sum_probs=351.2

Q ss_pred             CccccccccCCCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccc
Q 003199            1 MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCAL   80 (840)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l   80 (840)
                      ++.|.+++.+|.|..+++|++|+|++|.+++.+|..+.++++|++|+|++|.+   ....+..  .+++|++|+|++|.+
T Consensus       207 Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~--~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF---VGPIPPL--PLKSLQYLSLAENKF  281 (768)
T ss_dssp             CCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC---EESCCCC--CCTTCCEEECCSSEE
T ss_pred             CcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc---cCccCcc--ccCCCCEEECcCCcc
Confidence            35677888888899999999999999999988899999999999999999843   3211111  455555555555555


Q ss_pred             cccCCccccCC-CCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcc-cCCCCCCCeeeccCCcc-----
Q 003199           81 HGQIPASIGNV-TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEE-LGNLTELTDLDMSVNHL-----  153 (840)
Q Consensus        81 ~~~~~~~~~~l-~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~-l~~l~~L~~L~L~~n~l-----  153 (840)
                      ++.+|..+..+ ++|++|+|++|.+++..|..|..+++|++|+|++|+ +.+.+|.. +..+++|++|+|++|.+     
T Consensus       282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p  360 (768)
T 3rgz_A          282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELP  360 (768)
T ss_dssp             EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred             CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence            55555555443 555555555555555555555555555555555554 33344433 44455555555555544     


Q ss_pred             --------------------cccCCccccC--CCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCC
Q 003199          154 --------------------SGKIPESILR--LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ  211 (840)
Q Consensus       154 --------------------~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  211 (840)
                                          ++..|..+..  +++|++|++++|.+++..|..+.++++|++|+|++|++++..|..+..
T Consensus       361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  440 (768)
T 3rgz_A          361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS  440 (768)
T ss_dssp             TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc
Confidence                                4444444444  567788888888887788888999999999999999999889999999


Q ss_pred             CCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEe
Q 003199          212 WSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIID  291 (840)
Q Consensus       212 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  291 (840)
                      +++|+.|+|++|++++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|.++..+++|+.|+
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCCcccCCCCCCceeecccceeeeccchhhcc----------------------------------------
Q 003199          292 LSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYR----------------------------------------  331 (840)
Q Consensus       292 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~----------------------------------------  331 (840)
                      |++|++++.+|..++.+++|+.|+|++|++++.+|..++.                                        
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR  600 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999877765533                                        


Q ss_pred             ------------------------------cCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhccccc
Q 003199          332 ------------------------------AISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLK  381 (840)
Q Consensus       332 ------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  381 (840)
                                                    +++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|..|+.++
T Consensus       601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~  680 (768)
T 3rgz_A          601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR  680 (768)
T ss_dssp             GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence                                          46789999999999999999999999999999999999999999999999


Q ss_pred             CCCEEECcCccccccCCchhhcc-CCCeEEccCCCCcCcCCccc--ccCCCcccccCCCCCccccc
Q 003199          382 SLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLSL--IKEGLVESFSGNPGLCVSVS  444 (840)
Q Consensus       382 ~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~--~~~~~~~~~~~n~~~c~~~~  444 (840)
                      +|+.|||++|+|+|.+|..+..+ .++.||+++|+++|.+|..-  ..+ ...++.|||++||.+.
T Consensus       681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~-~~~~~~gN~~Lcg~~l  745 (768)
T 3rgz_A          681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLCGYPL  745 (768)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS-CGGGGCSCTEEESTTS
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC-CHHHhcCCchhcCCCC
Confidence            99999999999999999999998 57999999999999999752  222 4567999999999764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.7e-52  Score=499.19  Aligned_cols=428  Identities=32%  Similarity=0.475  Sum_probs=359.7

Q ss_pred             ccccccccCCCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccc
Q 003199            2 SFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALH   81 (840)
Q Consensus         2 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~   81 (840)
                      +.|.++|.+|. ..+++|++|+|++|.+++.+|. ++++++|++|+|++|   .+....+..|..+++|++|+|++|.+.
T Consensus       186 s~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n---~l~~~~~~~l~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          186 SGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN---KLSGDFSRAISTCTELKLLNISSNQFV  260 (768)
T ss_dssp             CSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS---CCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred             CCCcccccCCc-ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC---cCCCcccHHHhcCCCCCEEECCCCccc
Confidence            34555655543 7888899999999998877776 888999999999999   566555677889999999999999998


Q ss_pred             ccCCccccCCCCCcEEEccCCcccccCchhhhcC-CCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCcc
Q 003199           82 GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLL-KNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPES  160 (840)
Q Consensus        82 ~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l-~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~  160 (840)
                      +..|..  .+++|++|+|++|++++.+|..+..+ ++|++|+|++|+ +.+.+|..|+.+++|++|+|++|.+++.+|..
T Consensus       261 ~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~  337 (768)
T 3rgz_A          261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPMD  337 (768)
T ss_dssp             ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred             CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence            777765  78899999999999998889888775 999999999997 67789999999999999999999999777765


Q ss_pred             -ccCCCCCcEEEeeccccccccchhhhcCC-C--------------------------CCEEEccCCcCcccCCcCCCCC
Q 003199          161 -ILRLPKLRVLQLYNNSLSGEISSVIANST-T--------------------------LTMLSLYDNSLTGEVPQDLGQW  212 (840)
Q Consensus       161 -~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~--------------------------L~~L~L~~N~l~~~~~~~l~~l  212 (840)
                       +..+++|++|++++|++++..|..+..++ +                          |++|+|++|++++.+|..+..+
T Consensus       338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l  417 (768)
T 3rgz_A          338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC  417 (768)
T ss_dssp             HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred             HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence             89999999999999999877777666554 4                          5555555555555666677777


Q ss_pred             CCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEec
Q 003199          213 SPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDL  292 (840)
Q Consensus       213 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  292 (840)
                      ++|++|+|++|++++..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+.|+|
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence            78888888888888888888888888888888888888888888888888888888888888888888888899999999


Q ss_pred             cCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcc-------------------
Q 003199          293 SYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI-------------------  353 (840)
Q Consensus       293 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-------------------  353 (840)
                      ++|++++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|++|+++|.+|..+                   
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~  577 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY  577 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence            9999988888889999999999999999998999999999999999999998887776543                   


Q ss_pred             ---------------------------------------------------cCccccchhcccCCccCCCcchhcccccC
Q 003199          354 ---------------------------------------------------GNLKKLNLLMLQSNKLNSSIPNSLSSLKS  382 (840)
Q Consensus       354 ---------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  382 (840)
                                                                         +.+++|+.|+|++|+++|.+|..++.+++
T Consensus       578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  657 (768)
T 3rgz_A          578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY  657 (768)
T ss_dssp             EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence                                                               33567888999999999999999999999


Q ss_pred             CCEEECcCccccccCCchhhcc-CCCeEEccCCCCcCcCCcccccCC--CcccccCCC
Q 003199          383 LNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKEG--LVESFSGNP  437 (840)
Q Consensus       383 L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~~~~~--~~~~~~~n~  437 (840)
                      |+.|||++|+++|.+|..+..+ .++.||+++|+++|.+|..+....  ....+++|+
T Consensus       658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            9999999999999999999988 578999999999999998766543  345666665

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=6.4e-53  Score=441.56  Aligned_cols=257  Identities=27%  Similarity=0.384  Sum_probs=207.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|...+.||+|+||+||+|.+.      ++..||||++....          ....+.|.+|++++++++|||||+++|
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~----------~~~~~~f~~E~~il~~l~HpnIV~l~g   82 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS----------DNARKDFHREAELLTNLQHEHIVKFYG   82 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC----------HHHHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC----------hHHHHHHHHHHHHHHhCCCCCCccEEE
Confidence            45777889999999999999764      47889999985321          234578999999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcC------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCE
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKG------------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNI  667 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Ni  667 (840)
                      +|.+.+..++|||||++|+|.++++..            ...++|.++..|+.|||+||+|||+   ++||||||||+||
T Consensus        83 ~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NI  159 (299)
T 4asz_A           83 VCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNC  159 (299)
T ss_dssp             EECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGE
T ss_pred             EEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccCHhhE
Confidence            999999999999999999999999753            2469999999999999999999999   9999999999999


Q ss_pred             EEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCC
Q 003199          668 LLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDN  746 (840)
Q Consensus       668 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~  746 (840)
                      |+++++.+||+|||+|+...... .........||+.|||||++.+..++.++|||||||++|||+| |+.||.+..  .
T Consensus       160 Ll~~~~~~Ki~DFGla~~~~~~~-~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~--~  236 (299)
T 4asz_A          160 LVGENLLVKIGDFGMSRDVYSTD-YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS--N  236 (299)
T ss_dssp             EECGGGCEEECCCSCHHHHTGGG-CEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--H
T ss_pred             EECCCCcEEECCcccceecCCCC-ceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC--H
Confidence            99999999999999998764421 1122234569999999999999999999999999999999999 999997531  1


Q ss_pred             cchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          747 KNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      .....             .+......+.....+.++.+++.+||+.||++|||++||.+.|+++.
T Consensus       237 ~~~~~-------------~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~  288 (299)
T 4asz_A          237 NEVIE-------------CITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLA  288 (299)
T ss_dssp             HHHHH-------------HHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHH-------------HHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            11111             11111111112223456778888999999999999999999998753

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.2e-52  Score=441.37  Aligned_cols=257  Identities=22%  Similarity=0.329  Sum_probs=207.9

Q ss_pred             hcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      .+...+.||+|+||+||+|.+.      +++.||||++.....         ....+.|.+|+.++++++|||||+++|+
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~---------~~~~~~f~~E~~il~~l~HpNIV~l~g~   97 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE---------GPLREEFRHEAMLRARLQHPNVVCLLGV   97 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC---------C-CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC---------hHHHHHHHHHHHHHHhCCCCCCCCcceE
Confidence            3456678999999999999763      468899999854321         1234679999999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCC
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKST  665 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~  665 (840)
                      |.+....++|||||++|+|.+++....               ..++|.++..|+.|||+||+|||+   ++||||||||+
T Consensus        98 ~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~  174 (308)
T 4gt4_A           98 VTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATR  174 (308)
T ss_dssp             ECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             EEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCcccc
Confidence            999999999999999999999996431               358999999999999999999999   99999999999


Q ss_pred             CEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCC
Q 003199          666 NILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG  744 (840)
Q Consensus       666 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~  744 (840)
                      |||+++++.+||+|||+|+...... .........||+.|||||++.++.++.++|||||||++|||+| |+.||.+.. 
T Consensus       175 NILl~~~~~~Ki~DFGlar~~~~~~-~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~-  252 (308)
T 4gt4_A          175 NVLVYDKLNVKISDLGLFREVYAAD-YYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS-  252 (308)
T ss_dssp             GEEECGGGCEEECCSCCBCGGGGGG-CBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC-
T ss_pred             ceEECCCCCEEECCcccceeccCCC-ceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC-
Confidence            9999999999999999998765421 2223345679999999999999999999999999999999999 899997531 


Q ss_pred             CCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                       ......             .+......+...+.+..+.+++.+||+.||++||||+||+++|+.+.
T Consensus       253 -~~~~~~-------------~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~  305 (308)
T 4gt4_A          253 -NQDVVE-------------MIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG  305 (308)
T ss_dssp             -HHHHHH-------------HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             -HHHHHH-------------HHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence             111111             11111112222334456778899999999999999999999998753

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-52  Score=436.74  Aligned_cols=262  Identities=28%  Similarity=0.400  Sum_probs=203.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +++...++||+|+||+||+|.+++  .||||+++....        ..+..+.|.+|++++++++|||||+++|++.+ +
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~--------~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~  104 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP--------TPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-D  104 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC--------CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-S
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC--------CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-C
Confidence            345677899999999999998763  699999853321        13345789999999999999999999999865 5


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|||||++|+|.++++.....++|.++..|+.|||.||+|||+   ++||||||||+|||+++++.+||+|||+|+.
T Consensus       105 ~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~  181 (307)
T 3omv_A          105 NLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATV  181 (307)
T ss_dssp             SCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC
T ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeeccCcee
Confidence            6899999999999999998776689999999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcceecccccccccCcccccc---CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      .... ..........||+.|||||++.+   ..|+.++|||||||++|||+||+.||.+...  ......   ....   
T Consensus       182 ~~~~-~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~--~~~~~~---~~~~---  252 (307)
T 3omv_A          182 KSRW-SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN--RDQIIF---MVGR---  252 (307)
T ss_dssp             -------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC--HHHHHH---HHHT---
T ss_pred             cccC-CcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCCh--HHHHHH---HHhc---
Confidence            6432 12233455689999999999854   4689999999999999999999999975321  111111   0000   


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                        ....+.+.....+....+.+++.+||+.||++||||.||+++|+.+..
T Consensus       253 --~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~  300 (307)
T 3omv_A          253 --GYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH  300 (307)
T ss_dssp             --TCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred             --CCCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence              011112222223344567788889999999999999999999987643

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.9e-52  Score=442.78  Aligned_cols=257  Identities=26%  Similarity=0.345  Sum_probs=201.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|...++||+|+||+||+|.++      +++.||||++....          ....+.|.+|++++++++|||||+++|
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~----------~~~~~~f~~E~~il~~l~HpnIV~l~g  110 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS----------ESARQDFQREAELLTMLQHQHIVRFFG  110 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS----------HHHHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCC----------HHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence            35666789999999999999764      47899999984321          234578999999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC--------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL--------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKST  665 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~  665 (840)
                      +|.+....++|||||++|+|.++++...              ..++|.++..|+.|||+||+|||+   ++||||||||+
T Consensus       111 ~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~  187 (329)
T 4aoj_A          111 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATR  187 (329)
T ss_dssp             EECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGG
T ss_pred             EEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHh
Confidence            9999999999999999999999997642              358999999999999999999999   99999999999


Q ss_pred             CEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCC
Q 003199          666 NILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG  744 (840)
Q Consensus       666 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~  744 (840)
                      |||+++++.+||+|||+|+..... ..........||+.|||||++.+..++.++|||||||++|||+| |+.||.+.. 
T Consensus       188 NILl~~~~~~Ki~DFGla~~~~~~-~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~-  265 (329)
T 4aoj_A          188 NCLVGQGLVVKIGDFGMSRDIYST-DYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS-  265 (329)
T ss_dssp             GEEEETTTEEEECCCC-----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC-
T ss_pred             hEEECCCCcEEEcccccceeccCC-CcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC-
Confidence            999999999999999999876432 12223345679999999999999999999999999999999999 999997531 


Q ss_pred             CCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                       .......+   ...       .....+.   ....++.+++.+||+.||++||||+||+++|+.+.
T Consensus       266 -~~~~~~~i---~~g-------~~~~~p~---~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~  318 (329)
T 4aoj_A          266 -NTEAIDCI---TQG-------RELERPR---ACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALA  318 (329)
T ss_dssp             -HHHHHHHH---HHT-------CCCCCCT---TCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHH
T ss_pred             -HHHHHHHH---HcC-------CCCCCcc---cccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHh
Confidence             11111110   000       0111122   23456778888999999999999999999998764

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.2e-51  Score=437.41  Aligned_cols=252  Identities=24%  Similarity=0.360  Sum_probs=200.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++......        ....+.+.+|++++++++|||||++++++.+.
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~--------~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~   95 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS--------SKEREESRREVAVLANMKHPNIVQYRESFEEN   95 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC--------HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC--------HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEEC
Confidence            5788999999999999999965 57999999999544321        23356789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      +..|+|||||++|+|.+++.... ..+++.+++.|+.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|
T Consensus        96 ~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla  172 (350)
T 4b9d_A           96 GSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIA  172 (350)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEE
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCCEEEcccccc
Confidence            99999999999999999997543 457899999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +.+..   ........+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..     ......         
T Consensus       173 ~~~~~---~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-----~~~~~~---------  235 (350)
T 4b9d_A          173 RVLNS---TVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS-----MKNLVL---------  235 (350)
T ss_dssp             SCCCH---HHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHHH---------
T ss_pred             eeecC---CcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC-----HHHHHH---------
Confidence            87632   1122345679999999999999999999999999999999999999997531     111111         


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       .+......+.......++.+++.+||+.||++|||++|++++
T Consensus       236 -~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  277 (350)
T 4b9d_A          236 -KIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK  277 (350)
T ss_dssp             -HHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             -HHHcCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             111111111112233456778889999999999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-49  Score=466.82  Aligned_cols=436  Identities=21%  Similarity=0.205  Sum_probs=281.7

Q ss_pred             CccccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc
Q 003199            1 MSFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA   79 (840)
Q Consensus         1 ~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~   79 (840)
                      ++.|.+++..|. |+++++|++|+|++|.|++..|.+|.++++|++|+|++|   .+..+++..|..+++|++|+|++|.
T Consensus        40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~L~~n~  116 (606)
T 3t6q_A           40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN---PLIFMAETALSGPKALKHLFFIQTG  116 (606)
T ss_dssp             CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC---CCSEECTTTTSSCTTCCEEECTTSC
T ss_pred             ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC---cccccChhhhcccccccEeeccccC
Confidence            356777777664 888888888888888888777888888888888888888   5666677778888888888888888


Q ss_pred             ccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCC--eeeccCCcccccC
Q 003199           80 LHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELT--DLDMSVNHLSGKI  157 (840)
Q Consensus        80 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~--~L~L~~n~l~~~~  157 (840)
                      +++..|..++++++|++|+|++|++++..+..+..+++|++|++++|+ +.+..|..+..+++|+  +|++++|.+++..
T Consensus       117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~  195 (606)
T 3t6q_A          117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIE  195 (606)
T ss_dssp             CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred             cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccC
Confidence            877667778888888888888888875443444557788888887776 4444455566666666  6666666666544


Q ss_pred             CccccCC---------------------------------------------------CCCcEEEeeccccccccchhhh
Q 003199          158 PESILRL---------------------------------------------------PKLRVLQLYNNSLSGEISSVIA  186 (840)
Q Consensus       158 ~~~~~~l---------------------------------------------------~~L~~L~L~~N~l~~~~~~~~~  186 (840)
                      |..|...                                                   .+|+.|++++|.+++..+..|.
T Consensus       196 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~  275 (606)
T 3t6q_A          196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH  275 (606)
T ss_dssp             TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT
T ss_pred             hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhc
Confidence            4333210                                                   0344444444444444444455


Q ss_pred             cCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCcccc-------------------------CCCCchh
Q 003199          187 NSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVC-------------------------SRGKLQY  241 (840)
Q Consensus       187 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-------------------------~l~~L~~  241 (840)
                      .+++|++|++++|+++ .+|..+..+++|++|++++|++++..|..+.                         .+++|++
T Consensus       276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            5555555555555555 3444555555555555555555544444444                         4455555


Q ss_pred             hhcccccccccC--CcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCc-ccCCCCCCceeeccc
Q 003199          242 FLVLQNMFSGVL--PDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIAN-TVGNARNLSELFMQR  318 (840)
Q Consensus       242 L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~  318 (840)
                      |++++|.+.+..  +..+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..+. .+..+++|+.|++++
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH  434 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred             EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence            555555554443  44555556666666666666555555666666666666666666554433 356666666666666


Q ss_pred             ceeeeccchhhcccCcccEEEcCCCccCCC---CCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccc
Q 003199          319 NQISGFIPSEIYRAISLVKIDLSDNLLSGP---IPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG  395 (840)
Q Consensus       319 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  395 (840)
                      |.+++..|..+..+++|+.|+|++|++++.   .+..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++
T Consensus       435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence            666666666666666777777777766642   22456667777777777777776667777777777777777777777


Q ss_pred             cCCchhhccCCCeEEccCCCCcCcCCccccc--CCCcccccCCCCCcc
Q 003199          396 YIPESLCELLPNSINFSNNRLSGPIPLSLIK--EGLVESFSGNPGLCV  441 (840)
Q Consensus       396 ~~p~~~~~~~~~~l~l~~N~l~~~~p~~~~~--~~~~~~~~~n~~~c~  441 (840)
                      .+|..+..+....|++++|++++..|..+..  ......+.+|||.|.
T Consensus       515 ~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          515 SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             GGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             CChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            7777777663227777888877766654322  224567888888883

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-49  Score=480.69  Aligned_cols=433  Identities=22%  Similarity=0.262  Sum_probs=252.2

Q ss_pred             ccccccccCCC-CCCCCCCCEEecCCCcCcccC-CccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc
Q 003199            2 SFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQF-PLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA   79 (840)
Q Consensus         2 ~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~-p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~   79 (840)
                      ++|.+++..|. |.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|   .+..+.+..|.++++|++|+|++|.
T Consensus        32 s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N---~l~~~~p~~~~~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS---KIYFLHPDAFQGLFHLFELRLYFCG  108 (844)
T ss_dssp             ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC---CCCEECTTSSCSCSSCCCEECTTCC
T ss_pred             CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC---cCcccCHhHccCCcccCEeeCcCCC
Confidence            34555555443 556666666666665333232 555566666666666666   4445555555566666666666666


Q ss_pred             ccccCCcc--ccCCCCCcEEEccCCcccccCc-hhhhcCCCCCeeecccCccccccCCcccCCC--CCCCeeeccCCccc
Q 003199           80 LHGQIPAS--IGNVTSLTDLELTGNFITGHIP-PEIGLLKNLRQLELYYNQQLAGTIPEELGNL--TELTDLDMSVNHLS  154 (840)
Q Consensus        80 l~~~~~~~--~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l--~~L~~L~L~~n~l~  154 (840)
                      +.+..|..  |+++++|++|+|++|.+++..+ ..|+++++|++|+|++|. +.+..+..+..+  ++|+.|+|++|.+.
T Consensus       109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEECCCCccc
Confidence            55444333  5556666666666666554433 355556666666665554 333333333333  34444444444444


Q ss_pred             ccCCccccCCCC------CcEEEeeccccccccchhhhc--------------------------------------CCC
Q 003199          155 GKIPESILRLPK------LRVLQLYNNSLSGEISSVIAN--------------------------------------STT  190 (840)
Q Consensus       155 ~~~~~~~~~l~~------L~~L~L~~N~l~~~~~~~~~~--------------------------------------l~~  190 (840)
                      +..|..+..+++      |+.|++++|.+++..+..+..                                      .++
T Consensus       188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~  267 (844)
T 3j0a_A          188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS  267 (844)
T ss_dssp             CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred             cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence            333333333222      444444444433222221111                                      134


Q ss_pred             CCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeC
Q 003199          191 LTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN  270 (840)
Q Consensus       191 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  270 (840)
                      |++|+|++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  347 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK  347 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence            55555555555544455555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ceeeccCCccccCCCcccEEeccCCcccccCC----------------------------------------cccCCCCC
Q 003199          271 NHLEGSIPEGILSLPHVSIIDLSYNSFSGPIA----------------------------------------NTVGNARN  310 (840)
Q Consensus       271 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------------------~~~~~l~~  310 (840)
                      |++.+..+..|..+++|+.|+|++|.+++...                                        ..+..+++
T Consensus       348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~  427 (844)
T 3j0a_A          348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH  427 (844)
T ss_dssp             CCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred             CCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCc
Confidence            55554444445555555555555555443110                                        01235566


Q ss_pred             Cceeecccceeeeccch-hhcccCcccEEEcCCCccC-----CCCCCcccCccccchhcccCCccCCCcchhcccccCCC
Q 003199          311 LSELFMQRNQISGFIPS-EIYRAISLVKIDLSDNLLS-----GPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLN  384 (840)
Q Consensus       311 L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  384 (840)
                      |+.|+|++|++++..+. .+..+++|+.|+|++|.++     +..+..|.++++|+.|+|++|+|++.+|..|..+++|+
T Consensus       428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  507 (844)
T 3j0a_A          428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR  507 (844)
T ss_dssp             CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred             cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh
Confidence            66666666666644332 2344567777777777775     33446688899999999999999999999999999999


Q ss_pred             EEECcCccccccCCchhhccCCCeEEccCCCCcCcCCcccccCCCcccccCCCCCc
Q 003199          385 VLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLC  440 (840)
Q Consensus       385 ~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~p~~~~~~~~~~~~~~n~~~c  440 (840)
                      .|+|++|+|++..|..+. ..++.|++++|+++|..|..+... ....+.+|||.|
T Consensus       508 ~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L-~~l~l~~Np~~C  561 (844)
T 3j0a_A          508 GLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSL-SVLDITHNKFIC  561 (844)
T ss_dssp             EEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSC-CEEEEEEECCCC
T ss_pred             eeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCc-CEEEecCCCccc
Confidence            999999999976666555 567899999999999999776533 567899999999

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=5.5e-51  Score=424.92  Aligned_cols=269  Identities=23%  Similarity=0.289  Sum_probs=215.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....       ......+.+.+|++++++++|||||++++++.+.
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~-------~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  104 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHI-------IKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD  104 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHC-------CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC
Confidence            4688999999999999999955 5799999999854321       1122356789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..|+||||+++|+|.+++.+.. .+++.++..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+
T Consensus       105 ~~~yivmEy~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~  180 (311)
T 4aw0_A          105 EKLYFGLSYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAK  180 (311)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEEcCCCCEEEEEcCCce
Confidence            99999999999999999998764 69999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+... .........+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..     ...........     
T Consensus       181 ~~~~~-~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-----~~~~~~~i~~~-----  249 (311)
T 4aw0_A          181 VLSPE-SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN-----EGLIFAKIIKL-----  249 (311)
T ss_dssp             ECCTT-TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHT-----
T ss_pred             ecCCC-CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-----HHHHHHHHHcC-----
Confidence            76432 22233456789999999999999999999999999999999999999997531     11111111110     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCCCCCCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPN  822 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~~~~~~  822 (840)
                         +..++..+   ..++.+++.+|+++||++|||++|+..+-+-.....|...+|..
T Consensus       250 ---~~~~p~~~---s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw~~  301 (311)
T 4aw0_A          250 ---EYDFPEKF---FPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWEN  301 (311)
T ss_dssp             ---CCCCCTTC---CHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTT
T ss_pred             ---CCCCCccc---CHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCCCHHH
Confidence               01122222   33566788899999999999999976554444455555555544

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=9.8e-51  Score=429.61  Aligned_cols=250  Identities=25%  Similarity=0.376  Sum_probs=204.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..++||+|+||+||+|.. .+|+.||||++......          ..+.+.+|+++++.++|||||++++++.+.
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----------~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~  143 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----------RRELLFNEVVIMRDYQHENVVEMYNSYLVG  143 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS----------SGGGGHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchh----------HHHHHHHHHHHHHhCCCCCCCcEEEEEEEC
Confidence            4578888999999999999965 47999999998543211          123477899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..|+|||||++|+|.+++...  .+++.++..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+
T Consensus       144 ~~~~ivmEy~~gg~L~~~l~~~--~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~  218 (346)
T 4fih_A          144 DELWVVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCA  218 (346)
T ss_dssp             TEEEEEECCCTTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CEEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEECCCCCEEEecCcCce
Confidence            9999999999999999999875  58999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+..   ........+||+.|||||++.+..|+.++||||+||++|||++|+.||.+..    ........        .
T Consensus       219 ~~~~---~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----~~~~~~~i--------~  283 (346)
T 4fih_A          219 QVSK---EVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP----PLKAMKMI--------R  283 (346)
T ss_dssp             ECCS---SSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHH--------H
T ss_pred             ecCC---CCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHH--------H
Confidence            7643   2223456789999999999999999999999999999999999999997531    11111100        0


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ......+ ........++.+++.+||+.||++|||+.|+++|
T Consensus       284 ~~~~~~~-~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          284 DNLPPRL-KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  324 (346)
T ss_dssp             HSSCCCC-SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             cCCCCCC-CccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            0001111 1122234566778889999999999999999986

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.7e-50  Score=425.11  Aligned_cols=253  Identities=23%  Similarity=0.280  Sum_probs=201.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...++||+|+||+||+|.. .+|+.||||++.....               ..+|+.++++++|||||++++++.+.
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~---------------~~~E~~il~~l~HpnIV~l~~~~~~~  122 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF---------------RVEELVACAGLSSPRIVPLYGAVREG  122 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---------------CTHHHHTTTTCCCTTBCCEEEEEEET
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh---------------HHHHHHHHHhCCCCCCCcEEEEEEEC
Confidence            4577788999999999999965 5799999999854321               13699999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-CCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~Dfg~a  683 (840)
                      ...|+|||||++|+|.+++.+.. .+++..+..++.||+.||+|||+   ++||||||||+|||++.++ .+||+|||+|
T Consensus       123 ~~~~ivmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla  198 (336)
T 4g3f_A          123 PWVNIFMELLEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHA  198 (336)
T ss_dssp             TEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTC
T ss_pred             CEEEEEEeccCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCC
Confidence            99999999999999999998764 69999999999999999999999   9999999999999999987 6999999999


Q ss_pred             hhhhccCCCC--cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          684 KVLQARGGKD--STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       684 ~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +.+...+...  ......+||+.|||||++.+..|+.++|||||||++|||+||+.||.+.....  ....+   .....
T Consensus       199 ~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~--~~~~i---~~~~~  273 (336)
T 4g3f_A          199 LCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP--LCLKI---ASEPP  273 (336)
T ss_dssp             EEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC--CHHHH---HHSCC
T ss_pred             eEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH--HHHHH---HcCCC
Confidence            8775432111  12234679999999999999999999999999999999999999997643221  11110   00000


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .     ...+++.+   ...+.+++.+||++||++|||+.|++++|...
T Consensus       274 ~-----~~~~~~~~---s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~  314 (336)
T 4g3f_A          274 P-----IREIPPSC---APLTAQAIQEGLRKEPVHRASAMELRRKVGKA  314 (336)
T ss_dssp             G-----GGGSCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             C-----chhcCccC---CHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence            0     01122222   34566778899999999999999999988653

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.8e-50  Score=426.42  Aligned_cols=272  Identities=25%  Similarity=0.278  Sum_probs=200.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|...+.||+|+||+||+|.+. |+.||||++....           .....+..|+..+.+++|||||+++++|.+.+
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~-----------~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~   70 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-----------ERSWFREAEIYQTVMLRHENILGFIAADNKDN   70 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG-----------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC
T ss_pred             cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccc-----------hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecC
Confidence            45677789999999999999885 8999999984321           11223445777778899999999999997654


Q ss_pred             ----cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhc-----CCCCeEecCCCCCCEEEcCCCCCe
Q 003199          606 ----CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG-----LLSPIIHRDIKSTNILLDVNYQPK  676 (840)
Q Consensus       606 ----~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~Dlk~~Nill~~~~~~k  676 (840)
                          ..+||||||++|+|.++++..  .++|+.+..++.|++.||+|||+.     +.++||||||||+|||++.++.+|
T Consensus        71 ~~~~~~~lV~Ey~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~K  148 (303)
T 3hmm_A           71 GTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCC  148 (303)
T ss_dssp             SSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEE
T ss_pred             CCceEEEEEecCCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEE
Confidence                568999999999999999875  589999999999999999999973     123999999999999999999999


Q ss_pred             eecccchhhhhccCCC-CcceecccccccccCccccccC------CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcch
Q 003199          677 VADFGIAKVLQARGGK-DSTTTVIAGTYGYLAPEYAYSS------KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI  749 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~  749 (840)
                      |+|||+|+........ ........||+.|||||++.+.      .++.++|||||||++|||+||+.||..........
T Consensus       149 i~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~  228 (303)
T 3hmm_A          149 IADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY  228 (303)
T ss_dssp             ECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTT
T ss_pred             EEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccc
Confidence            9999999876432111 1223346799999999998764      36789999999999999999988875432211111


Q ss_pred             hhhhhhhhccccchhhhcc----cccCCCc--HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          750 IYWVSIKVDTKEGIMEVLD----KKLSGSF--RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ..+.............+..    +.++..+  .+....+.+++.+||+.||++||||.||++.|+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~  296 (303)
T 3hmm_A          229 YDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS  296 (303)
T ss_dssp             TTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred             hhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence            1100000000000011112    2222222  245667889999999999999999999999998764

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=4.9e-50  Score=416.23  Aligned_cols=247  Identities=25%  Similarity=0.345  Sum_probs=194.6

Q ss_pred             CccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec----
Q 003199          529 TEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS----  603 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----  603 (840)
                      ...++||+|+||+||+|.. .++..||||++......        ....+.|.+|++++++++|||||+++++|.+    
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~--------~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~  100 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT--------KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKG  100 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--------HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETT
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC--------HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCC
Confidence            3456799999999999965 47899999998543311        2335679999999999999999999999865    


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCCEEEcC-CCCCeeecc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSP--IIHRDIKSTNILLDV-NYQPKVADF  680 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~~-~~~~kl~Df  680 (840)
                      ....++|||||++|+|.+++.+.. .+++..+..|+.||+.||+|||+   ++  ||||||||+|||++. ++.+||+||
T Consensus       101 ~~~~~lvmEy~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~ylH~---~~~~IiHRDlKp~NILl~~~~g~vKl~DF  176 (290)
T 3fpq_A          101 KKCIVLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDL  176 (290)
T ss_dssp             EEEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCCCCCGGGEEESSTTSCEEECCT
T ss_pred             CcEEEEEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCCCEEecccChhheeEECCCCCEEEEeC
Confidence            355799999999999999998764 69999999999999999999998   66  999999999999984 789999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |+|+...     .......+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+...    ............
T Consensus       177 Gla~~~~-----~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~----~~~~~~~i~~~~  246 (290)
T 3fpq_A          177 GLATLKR-----ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRVTSGV  246 (290)
T ss_dssp             TGGGGCC-----TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHHTTTC
T ss_pred             cCCEeCC-----CCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc----HHHHHHHHHcCC
Confidence            9997532     223445689999999998865 699999999999999999999999964311    111111100000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            ........   ...++.+++.+||+.||++|||++|+++|
T Consensus       247 ------~~~~~~~~---~~~~~~~li~~~L~~dP~~R~s~~e~l~H  283 (290)
T 3fpq_A          247 ------KPASFDKV---AIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             ------CCGGGGGC---CCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ------CCCCCCcc---CCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                  00111111   12356778889999999999999999976

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.2e-48  Score=453.74  Aligned_cols=416  Identities=21%  Similarity=0.190  Sum_probs=372.2

Q ss_pred             CccccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc
Q 003199            1 MSFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA   79 (840)
Q Consensus         1 ~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~   79 (840)
                      ++.|.+++..|+ |+++++|++|+|++|.+++..|..|.++++|++|+|++|   .+..+++..|..+++|++|++++|.
T Consensus        64 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n---~i~~l~~~~~~~l~~L~~L~L~~n~  140 (606)
T 3t6q_A           64 LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT---GISSIDFIPLHNQKTLESLYLGSNH  140 (606)
T ss_dssp             CTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS---CCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred             CCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc---CcccCCcchhccCCcccEEECCCCc
Confidence            456778888776 999999999999999999888999999999999999999   6777777779999999999999999


Q ss_pred             ccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCC--eeecccCcccccc-------------------------
Q 003199           80 LHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLR--QLELYYNQQLAGT-------------------------  132 (840)
Q Consensus        80 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~--~L~L~~n~~~~~~-------------------------  132 (840)
                      +.+..+..+..+++|++|+|++|.+++..|..|..+++|+  .|++++|++ .+.                         
T Consensus       141 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l-~~~~~~~~~~~~L~~L~l~~~~~~~~~~  219 (606)
T 3t6q_A          141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIF  219 (606)
T ss_dssp             CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC-CEECTTTTTTCEEEEEECTTCSCHHHHH
T ss_pred             ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc-CccChhHhhhccccccccCCchhHHHHh
Confidence            9875545555699999999999999988888899999888  778877752 221                         


Q ss_pred             --------------------------------------------------CCcccCCCCCCCeeeccCCcccccCCcccc
Q 003199          133 --------------------------------------------------IPEELGNLTELTDLDMSVNHLSGKIPESIL  162 (840)
Q Consensus       133 --------------------------------------------------~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~  162 (840)
                                                                        .+..|..+++|++|++++|+++ .+|..+.
T Consensus       220 ~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~  298 (606)
T 3t6q_A          220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV  298 (606)
T ss_dssp             HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC
T ss_pred             hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc
Confidence                                                              2233777899999999999999 6788899


Q ss_pred             CCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCc-CCCCCCCcceeccccccccccC--CccccCCCCc
Q 003199          163 RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQ-DLGQWSPLVVLDLSENKLSGPL--PAKVCSRGKL  239 (840)
Q Consensus       163 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L  239 (840)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|++|++++|++++..  +..+..+++|
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  378 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL  378 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred             ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC
Confidence            999999999999999988888999999999999999999855554 5899999999999999999876  7889999999


Q ss_pred             hhhhcccccccccCCcccccccCCceEEeeCceeeccCCc-cccCCCcccEEeccCCcccccCCcccCCCCCCceeeccc
Q 003199          240 QYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPE-GILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQR  318 (840)
Q Consensus       240 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  318 (840)
                      ++|++++|.+.+..+..|..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+..++.+++|++|+|++
T Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  458 (606)
T 3t6q_A          379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG  458 (606)
T ss_dssp             CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence            9999999999999999999999999999999999977665 488999999999999999999999999999999999999


Q ss_pred             ceeeec---cchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccc
Q 003199          319 NQISGF---IPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG  395 (840)
Q Consensus       319 N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  395 (840)
                      |++++.   .+..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..|..|..+++| .|+|++|++++
T Consensus       459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            999863   33678999999999999999999889999999999999999999999999999999999 99999999998


Q ss_pred             cCCchhhcc-CCCeEEccCCCCcCcCCc
Q 003199          396 YIPESLCEL-LPNSINFSNNRLSGPIPL  422 (840)
Q Consensus       396 ~~p~~~~~~-~~~~l~l~~N~l~~~~p~  422 (840)
                      .+|..+..+ .++.+++++|++.|.++.
T Consensus       538 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          538 ILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             cCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            888888777 679999999999999884

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=7.6e-50  Score=410.95  Aligned_cols=250  Identities=24%  Similarity=0.349  Sum_probs=190.5

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..+|+..+.||+|+||+||+|.. .+|+.||||++......       .....+.+.+|++++++++|||||++++++.+
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~-------~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~   84 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLA-------KSDMQGRIEREISYLRLLRHPHIIKLYDVIKS   84 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC-------------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcC-------CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE
Confidence            46799999999999999999965 57999999998543321       12335678999999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .+..++||||+ +|+|.+++.+.. .+++.++..++.||+.||+|||+   ++|+||||||+|||+++++.+||+|||+|
T Consensus        85 ~~~~~ivmEy~-~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDiKP~NILl~~~~~vkl~DFGla  159 (275)
T 3hyh_A           85 KDEIIMVIEYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFGLS  159 (275)
T ss_dssp             SSEEEEEEECC-CEEHHHHHHHSC-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTCCEEECCSSCC
T ss_pred             CCEEEEEEeCC-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCChHHeEECCCCCEEEeecCCC
Confidence            99999999999 789999998765 69999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +....    ........||+.|||||++.+..+ +.++||||+||++|||+||+.||.+..     .....+......  
T Consensus       160 ~~~~~----~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~-----~~~~~~~i~~~~--  228 (275)
T 3hyh_A          160 NIMTD----GNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES-----IPVLFKNISNGV--  228 (275)
T ss_dssp             -------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHTC--
T ss_pred             eecCC----CCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHcCC--
Confidence            87643    223345789999999999988876 579999999999999999999997531     111111111100  


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            ..++...   ..++.+++.+|++.||++|||++|++++
T Consensus       229 ------~~~p~~~---s~~~~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          229 ------YTLPKFL---SPGAAGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             ------CCCCTTS---CHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             ------CCCCCCC---CHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence                  1112222   3456678889999999999999999986

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.8e-49  Score=430.40  Aligned_cols=250  Identities=25%  Similarity=0.377  Sum_probs=204.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..+.||+|+||+||+|.. .+|+.||||++......          ..+.+.+|+.+|+.++|||||++++++.+.
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----------~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~  220 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----------RRELLFNEVVIMRDYQHENVVEMYNSYLVG  220 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS----------SGGGHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchh----------HHHHHHHHHHHHHhCCCCCCCceEEEEEEC
Confidence            4588889999999999999965 57999999998543211          124578999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..|+|||||++|+|.+++...  .+++.++..|+.||+.||+|||+   ++||||||||+|||++.+|.+||+|||+|+
T Consensus       221 ~~~~iVmEy~~gG~L~~~i~~~--~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~  295 (423)
T 4fie_A          221 DELWVVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCA  295 (423)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCE
T ss_pred             CEEEEEEeCCCCCcHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEecCccce
Confidence            9999999999999999999765  58999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+..   ........+||+.|||||++.+..|+.++|||||||++|||++|+.||.+..    .. ......       .
T Consensus       296 ~~~~---~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----~~-~~~~~i-------~  360 (423)
T 4fie_A          296 QVSK---EVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP----PL-KAMKMI-------R  360 (423)
T ss_dssp             ECCS---SCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HH-HHHHHH-------H
T ss_pred             ECCC---CCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HH-HHHHHH-------H
Confidence            7643   2223456789999999999999999999999999999999999999997531    11 111100       0


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ......+ ........++.+++.+||+.||++|||+.|+++|
T Consensus       361 ~~~~~~~-~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          361 DNLPPRL-KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             HSCCCCC-SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             cCCCCCC-cccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            0011111 1111233456678889999999999999999986

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.8e-49  Score=424.63  Aligned_cols=258  Identities=26%  Similarity=0.342  Sum_probs=205.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC-CCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH-KNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~  598 (840)
                      ++|+..+.||+|+||+||+|.+..      ++.||||++.....         ....+.|.+|++++++++| ||||+++
T Consensus        64 ~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~---------~~~~~~~~~E~~il~~l~hhpnIV~l~  134 (353)
T 4ase_A           64 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---------HSEHRALMSELKILIHIGHHLNVVNLL  134 (353)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC---------HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             HHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---------hHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            578889999999999999997542      36899999854321         2335679999999999975 8999999


Q ss_pred             eEEecC-ccceEEEeecCCCChHHHhhcC---------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCC
Q 003199          599 CYFSSL-YCNLLVYEYMPNGNLWDALHKG---------------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDI  662 (840)
Q Consensus       599 ~~~~~~-~~~~lV~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl  662 (840)
                      |+|.+. ...++|||||++|+|.++++..               ...++|.++..++.|||+||+|||+   ++||||||
T Consensus       135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRDL  211 (353)
T 4ase_A          135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDL  211 (353)
T ss_dssp             EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCC
T ss_pred             EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh---CCeecCcc
Confidence            999664 5689999999999999999753               1348999999999999999999999   99999999


Q ss_pred             CCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCC
Q 003199          663 KSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVED  741 (840)
Q Consensus       663 k~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~  741 (840)
                      ||+|||+++++.+||+|||+|+.+... ..........||+.|||||++.+..|+.++|||||||++|||+| |+.||.+
T Consensus       212 K~~NILl~~~~~vKi~DFGlar~~~~~-~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~  290 (353)
T 4ase_A          212 AARNILLSEKNVVKICDFGLARDIYKD-PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG  290 (353)
T ss_dssp             SGGGEEECGGGCEEECCCGGGSCTTTC-TTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred             CccceeeCCCCCEEECcchhhhhcccC-CCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999876432 12233445679999999999999999999999999999999998 9999975


Q ss_pred             CCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          742 DFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .... ......    +.      .-.....+.   ....++.+++.+||+.||++|||++||+++|+++
T Consensus       291 ~~~~-~~~~~~----i~------~g~~~~~p~---~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l  345 (353)
T 4ase_A          291 VKID-EEFCRR----LK------EGTRMRAPD---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  345 (353)
T ss_dssp             CCCS-HHHHHH----HH------HTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCHH-HHHHHH----HH------cCCCCCCCc---cCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence            3211 111110    00      000111122   2234677888899999999999999999999865

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.7e-47  Score=454.77  Aligned_cols=437  Identities=21%  Similarity=0.208  Sum_probs=259.0

Q ss_pred             ccccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccc
Q 003199            2 SFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCAL   80 (840)
Q Consensus         2 ~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l   80 (840)
                      +.|.+++..+. |+++++|++|+|++|.+++..|..|.++++|++|+|++|   .+..++...|..+++|++|+|++|.+
T Consensus        33 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           33 THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN---ELSQLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             CSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS---CCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC---ccCccChhhhccCCCCCEEECCCCcc
Confidence            34555555543 666666666666666666666666666666666666666   45555655566666666666666666


Q ss_pred             cccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCcc-------------------------ccccCCc
Q 003199           81 HGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ-------------------------LAGTIPE  135 (840)
Q Consensus        81 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~-------------------------~~~~~p~  135 (840)
                      .+..|..|+++++|++|+|++|.+++..|..|..+++|++|++++|++                         +.+..|.
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence            655555566666666666666666655555555555555555555531                         1111111


Q ss_pred             ---------------------------------------------------ccCCC--CCCCeeeccCCcccccCCcccc
Q 003199          136 ---------------------------------------------------ELGNL--TELTDLDMSVNHLSGKIPESIL  162 (840)
Q Consensus       136 ---------------------------------------------------~l~~l--~~L~~L~L~~n~l~~~~~~~~~  162 (840)
                                                                         .|.++  ++|++|+|++|.+++..|..|.
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~  269 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA  269 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence                                                               11122  1255555555555555555555


Q ss_pred             CCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcc-----cCC----cCCCCCCCcceeccccccccccCCccc
Q 003199          163 RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTG-----EVP----QDLGQWSPLVVLDLSENKLSGPLPAKV  233 (840)
Q Consensus       163 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~  233 (840)
                      .+++|++|++++|++.+..+..|.++++|++|++++|...+     .+|    ..|..+++|++|++++|++++..+..|
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  349 (680)
T 1ziw_A          270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF  349 (680)
T ss_dssp             TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred             CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence            55555555555555554444333332222222222211110     000    023334444444444455544444444


Q ss_pred             cCCCCchhhh----------------------------cccccccccCCcccccccCCceEEeeCceeeccCC-ccccCC
Q 003199          234 CSRGKLQYFL----------------------------VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP-EGILSL  284 (840)
Q Consensus       234 ~~l~~L~~L~----------------------------l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l  284 (840)
                      ..+++|++|+                            +++|.+.+..|.+|..+++|+.|++++|.+.+.+| ..|..+
T Consensus       350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l  429 (680)
T 1ziw_A          350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL  429 (680)
T ss_dssp             TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred             ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence            4333333333                            23334444445555555555555555555554333 344445


Q ss_pred             CcccEEeccCCc------------------------cc--ccCCcccCCCCCCceeecccceeeeccchhhcccCcccEE
Q 003199          285 PHVSIIDLSYNS------------------------FS--GPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKI  338 (840)
Q Consensus       285 ~~L~~L~L~~N~------------------------l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  338 (840)
                      ++|+.|++++|+                        ++  +..|..|+.+++|+.|+|++|++++..+..+..+++|+.|
T Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L  509 (680)
T 1ziw_A          430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL  509 (680)
T ss_dssp             TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence            555555555554                        43  3456677778888888888888887777778888888888


Q ss_pred             EcCCCccCCCCC--------CcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeE
Q 003199          339 DLSDNLLSGPIP--------SGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSI  409 (840)
Q Consensus       339 ~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l  409 (840)
                      +|++|++++..+        ..++++++|+.|+|++|+++...+..|..+++|+.|||++|+|++..+..+..+ .++.|
T Consensus       510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  589 (680)
T 1ziw_A          510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL  589 (680)
T ss_dssp             ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence            888888875422        236788889999999999986656678999999999999999996555555555 67899


Q ss_pred             EccCCCCcCcCCcccc---cCCCcccccCCCCCcc
Q 003199          410 NFSNNRLSGPIPLSLI---KEGLVESFSGNPGLCV  441 (840)
Q Consensus       410 ~l~~N~l~~~~p~~~~---~~~~~~~~~~n~~~c~  441 (840)
                      ++++|++++..|..+.   .......+.+|||.|.
T Consensus       590 ~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             ECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             ECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            9999999987776433   2335678899999995

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.7e-48  Score=450.67  Aligned_cols=428  Identities=22%  Similarity=0.210  Sum_probs=311.9

Q ss_pred             ccccccccCC-CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccc
Q 003199            2 SFMYLTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCAL   80 (840)
Q Consensus         2 ~~~~~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l   80 (840)
                      +.|.+++..+ .|.++++|++|+|++|.|++..|.+|.++++|++|+|++|   .+..+++..|.++++|++|+|++|.+
T Consensus        40 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n---~l~~~~p~~~~~l~~L~~L~L~~n~l  116 (606)
T 3vq2_A           40 SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN---PIQSFSPGSFSGLTSLENLVAVETKL  116 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC---CCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred             CCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC---cccccChhhcCCcccCCEEEccCCcc
Confidence            4456666666 4677777777777777777666667777777777777777   55666666677777777777777777


Q ss_pred             cccCCccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCeeecccCccccccCCcccCCCCCCC----eeeccCCcccc
Q 003199           81 HGQIPASIGNVTSLTDLELTGNFITG-HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELT----DLDMSVNHLSG  155 (840)
Q Consensus        81 ~~~~~~~~~~l~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~----~L~L~~n~l~~  155 (840)
                      .+..+..|+++++|++|+|++|.+++ .+|..|.++++|++|+|++|+ +.+..|..+..+++|+    +|++++|.+++
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~  195 (606)
T 3vq2_A          117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDF  195 (606)
T ss_dssp             CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred             ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcce
Confidence            66665667777777777777777764 346677777777777777775 3444444454444333    56666666654


Q ss_pred             cCCccccCCCCCcEEEeecccccc--------------------------------------------------------
Q 003199          156 KIPESILRLPKLRVLQLYNNSLSG--------------------------------------------------------  179 (840)
Q Consensus       156 ~~~~~~~~l~~L~~L~L~~N~l~~--------------------------------------------------------  179 (840)
                      ..+..+... +|+.|++++|.+.+                                                        
T Consensus       196 ~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~  274 (606)
T 3vq2_A          196 IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF  274 (606)
T ss_dssp             ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTC
T ss_pred             eCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccc
Confidence            433333322 55555555554420                                                        


Q ss_pred             --ccch---------------------hhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCC
Q 003199          180 --EISS---------------------VIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR  236 (840)
Q Consensus       180 --~~~~---------------------~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  236 (840)
                        ..+.                     .+..+++|++|++++|++. .+| .+ .+++|+.|++++|+..+..  .+..+
T Consensus       275 ~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l  349 (606)
T 3vq2_A          275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVAL  349 (606)
T ss_dssp             CGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCC
T ss_pred             cccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccC
Confidence              1111                     2333445555555555552 334 23 5555555555555433222  45677


Q ss_pred             CCchhhhccccccccc--CCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCC-cccCCCCCCce
Q 003199          237 GKLQYFLVLQNMFSGV--LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIA-NTVGNARNLSE  313 (840)
Q Consensus       237 ~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~  313 (840)
                      ++|++|++++|.+.+.  .+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++.+..+ ..+..+++|+.
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            8888888888888776  3788889999999999999998 467889999999999999999998877 68899999999


Q ss_pred             eecccceeeeccchhhcccCcccEEEcCCCccCC-CCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCcc
Q 003199          314 LFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSG-PIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNL  392 (840)
Q Consensus       314 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  392 (840)
                      |++++|++++..|..+..+++|+.|++++|++++ .+|..++.+++|+.|+|++|++++..|..|..+++|++|+|++|+
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            9999999999899999999999999999999997 478899999999999999999998889999999999999999999


Q ss_pred             ccccCCchhhcc-CCCeEEccCCCCcCcCCcccccC---CCcccccCCCCCcc
Q 003199          393 LTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKE---GLVESFSGNPGLCV  441 (840)
Q Consensus       393 l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~~~~---~~~~~~~~n~~~c~  441 (840)
                      +++.+|..+..+ .++.|++++|+++ .+|..+...   .....+.+|||.|.
T Consensus       509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence            999889998887 5789999999998 566554443   34568899999984

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=8.3e-50  Score=416.38  Aligned_cols=250  Identities=25%  Similarity=0.326  Sum_probs=196.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||+||+|..    .+++.||||++........        ....+.+|++++++++|||||++++++
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~--------~~~~~~~E~~il~~l~HpnIv~l~~~~   95 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVR--------DRVRTKMERDILVEVNHPFIVKLHYAF   95 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEE--------ECC------CCCCCCCCTTEECEEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChH--------HHHHHHHHHHHHHHCCCCCCCeEEEEE
Confidence            4688999999999999999965    2578999999865432211        123477899999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+.+..|+|||||++|+|.+++.+.. .+++.++..++.||+.||+|||+   ++||||||||+|||+++++.+||+|||
T Consensus        96 ~~~~~~~ivmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFG  171 (304)
T 3ubd_A           96 QTEGKLYLILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFG  171 (304)
T ss_dssp             EETTEEEEEECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTSCEEEESSE
T ss_pred             EECCEEEEEEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHeEEcCCCCEEecccc
Confidence            99999999999999999999998765 69999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +|+.....   .......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..   .  ..........  
T Consensus       172 la~~~~~~---~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~---~--~~~~~~i~~~--  241 (304)
T 3ubd_A          172 LSKESIDH---EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKD---R--KETMTMILKA--  241 (304)
T ss_dssp             EEEC--------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS---H--HHHHHHHHHC--
T ss_pred             cceeccCC---CccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcC---H--HHHHHHHHcC--
Confidence            99865432   223345789999999999999999999999999999999999999997531   1  1111111110  


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~  806 (840)
                            ....+..   ...++.+++.+||+.||++|||     ++|+++|
T Consensus       242 ------~~~~p~~---~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H  282 (304)
T 3ubd_A          242 ------KLGMPQF---LSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH  282 (304)
T ss_dssp             ------CCCCCTT---SCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred             ------CCCCCCc---CCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence                  0111222   2345667888999999999998     4677765

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=3.6e-48  Score=406.42  Aligned_cols=253  Identities=21%  Similarity=0.348  Sum_probs=191.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||+|.. .+|+.||||++....         .....+.+.+|++++++++|||||++++++.+
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---------~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~   74 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN---------RELAREKVMREVKALAKLEHPGIVRYFNAWLE   74 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS---------SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC---------CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe
Confidence            45789999999999999999965 479999999985432         12335678999999999999999999999865


Q ss_pred             Cc------------cceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE
Q 003199          604 LY------------CNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL  669 (840)
Q Consensus       604 ~~------------~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill  669 (840)
                      .+            ..|+|||||++|+|.+++....  ...++..++.++.||+.||+|||+   ++||||||||+|||+
T Consensus        75 ~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~---~~IiHRDlKp~NILl  151 (299)
T 4g31_A           75 KNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHS---KGLMHRDLKPSNIFF  151 (299)
T ss_dssp             EC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEE
T ss_pred             cCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH---CcCccccCcHHHeEE
Confidence            43            3689999999999999998653  234567789999999999999999   999999999999999


Q ss_pred             cCCCCCeeecccchhhhhccCCCC---------cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCC
Q 003199          670 DVNYQPKVADFGIAKVLQARGGKD---------STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVE  740 (840)
Q Consensus       670 ~~~~~~kl~Dfg~a~~~~~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~  740 (840)
                      +.++.+||+|||+|+.+.......         ......+||+.|||||++.+..|+.++|||||||++|||++   ||.
T Consensus       152 ~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~  228 (299)
T 4g31_A          152 TMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFS  228 (299)
T ss_dssp             CTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCS
T ss_pred             CCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCC
Confidence            999999999999998875422111         12234579999999999999999999999999999999996   775


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..    ....          .....+.....++.+.+......+++.+||+.||++|||+.|++++
T Consensus       229 ~~----~~~~----------~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  280 (299)
T 4g31_A          229 TQ----MERV----------RTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN  280 (299)
T ss_dssp             SH----HHHH----------HHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             Cc----cHHH----------HHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            31    0000          0011112222333334444566788999999999999999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.7e-46  Score=437.21  Aligned_cols=410  Identities=20%  Similarity=0.191  Sum_probs=358.7

Q ss_pred             CccccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc
Q 003199            1 MSFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA   79 (840)
Q Consensus         1 ~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~   79 (840)
                      ++.|.+++..|+ |.++++|++|+|++|.|++..|..|.++++|++|+|++|   .+..+++..|..+++|++|++++|.
T Consensus        63 Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~n~  139 (606)
T 3vq2_A           63 LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET---KLASLESFPIGQLITLKKLNVAHNF  139 (606)
T ss_dssp             CTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS---CCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred             CCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC---ccccccccccCCCCCCCEEeCCCCc
Confidence            456788888785 899999999999999999888999999999999999999   7778887789999999999999999


Q ss_pred             ccc-cCCccccCCCCCcEEEccCCcccccCchhhhcCCCCC----eeecccCccccccCCcc------------------
Q 003199           80 LHG-QIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLR----QLELYYNQQLAGTIPEE------------------  136 (840)
Q Consensus        80 l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~----~L~L~~n~~~~~~~p~~------------------  136 (840)
                      +.+ .+|..|+++++|++|+|++|++++..|..|..+++|+    .|++++|+ +.+..+..                  
T Consensus       140 l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~  218 (606)
T 3vq2_A          140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSS  218 (606)
T ss_dssp             CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCH
T ss_pred             ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcccccCceeeeeeccCCccch
Confidence            986 5699999999999999999999988888777766554    56666665 22111111                  


Q ss_pred             --------------------------------------------------------------cCCCCCCCeeeccCCccc
Q 003199          137 --------------------------------------------------------------LGNLTELTDLDMSVNHLS  154 (840)
Q Consensus       137 --------------------------------------------------------------l~~l~~L~~L~L~~n~l~  154 (840)
                                                                                    +..+++|+.|++++|.+.
T Consensus       219 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  298 (606)
T 3vq2_A          219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK  298 (606)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC
T ss_pred             hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch
Confidence                                                                          334566666777777766


Q ss_pred             ccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccccc--CCcc
Q 003199          155 GKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGP--LPAK  232 (840)
Q Consensus       155 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~~~~  232 (840)
                       .+| .+..+++|++|++++|.+. .+| .+ .+++|++|++++|+..+..  .+..+++|++|++++|++++.  .+..
T Consensus       299 -~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~  371 (606)
T 3vq2_A          299 -YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYS  371 (606)
T ss_dssp             -CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHH
T ss_pred             -hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhh
Confidence             344 7888899999999999995 555 45 9999999999999665433  678999999999999999977  4888


Q ss_pred             ccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCC-ccccCCCcccEEeccCCcccccCCcccCCCCCC
Q 003199          233 VCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP-EGILSLPHVSIIDLSYNSFSGPIANTVGNARNL  311 (840)
Q Consensus       233 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  311 (840)
                      +..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..| ..+..+++|+.|++++|++++..+..++.+++|
T Consensus       372 ~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  450 (606)
T 3vq2_A          372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL  450 (606)
T ss_dssp             HHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             hccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence            9999999999999999886 55889999999999999999998777 688999999999999999999999999999999


Q ss_pred             ceeecccceeee-ccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcC
Q 003199          312 SELFMQRNQISG-FIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSN  390 (840)
Q Consensus       312 ~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  390 (840)
                      ++|+|++|++++ ..|..+..+++|+.|+|++|++++..|..++++++|+.|+|++|++++.+|..|..+++|++|||++
T Consensus       451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  530 (606)
T 3vq2_A          451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF  530 (606)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence            999999999997 4788999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             ccccccCCchhhccC--CCeEEccCCCCcCcCCcc
Q 003199          391 NLLTGYIPESLCELL--PNSINFSNNRLSGPIPLS  423 (840)
Q Consensus       391 N~l~~~~p~~~~~~~--~~~l~l~~N~l~~~~p~~  423 (840)
                      |+|+ .+|..+..+.  ++.+++++|++.|.++..
T Consensus       531 N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          531 NRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             SCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             CcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            9999 7888788773  789999999999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-46  Score=451.35  Aligned_cols=413  Identities=24%  Similarity=0.260  Sum_probs=301.8

Q ss_pred             cccccccC-C-CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCC--CCcccccccccccEEEecCc
Q 003199            3 FMYLTGTL-P-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWK--LPESSIFRLTKLRIMVLATC   78 (840)
Q Consensus         3 ~~~~~~~~-~-~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~--l~~~~~~~l~~L~~L~L~~n   78 (840)
                      .|+..+.+ | .|+++++|++|+|++|.|++..|..|.++++|++|+|++|   .+..  .+...|..+++|++|+|++|
T Consensus        57 ~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A           57 SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC---GLSDAVLKDGYFRNLKALTRLDLSKN  133 (844)
T ss_dssp             TTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC---CCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred             CCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC---CCCcccccCccccccCCCCEEECCCC
Confidence            34455565 4 3999999999999999999888999999999999999999   5554  23345899999999999999


Q ss_pred             cccccCC-ccccCCCCCcEEEccCCcccccCchhhhcC--CCCCeeecccCccccccCCcccCCCCC------CCeeecc
Q 003199           79 ALHGQIP-ASIGNVTSLTDLELTGNFITGHIPPEIGLL--KNLRQLELYYNQQLAGTIPEELGNLTE------LTDLDMS  149 (840)
Q Consensus        79 ~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l--~~L~~L~L~~n~~~~~~~p~~l~~l~~------L~~L~L~  149 (840)
                      .+.+..+ ..|+++++|++|+|++|.+++..+..|..+  ++|+.|+|+.|. +.+..|..+..+++      |++|+|+
T Consensus       134 ~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls  212 (844)
T 3j0a_A          134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVS  212 (844)
T ss_dssp             CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred             cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc-cccccccchhhcCCccccCceeEEecC
Confidence            9987755 579999999999999999998888888877  777777777775 44444444433333      5555555


Q ss_pred             CCcccccCCccccC--------------------------------------CCCCcEEEeeccccccccchhhhcCCCC
Q 003199          150 VNHLSGKIPESILR--------------------------------------LPKLRVLQLYNNSLSGEISSVIANSTTL  191 (840)
Q Consensus       150 ~n~l~~~~~~~~~~--------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L  191 (840)
                      +|.+++..+..+..                                      .++|+.|+|++|.+.+..+..|..+++|
T Consensus       213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  292 (844)
T 3j0a_A          213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL  292 (844)
T ss_dssp             SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCC
T ss_pred             CCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCC
Confidence            55544333222211                                      1345555555555555555555555555


Q ss_pred             CEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCc
Q 003199          192 TMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNN  271 (840)
Q Consensus       192 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N  271 (840)
                      +.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus       293 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             eeec------------------cCCc----------------------cccCCCcccEEeccCCcccccCCc-ccCCCCC
Q 003199          272 HLEG------------------SIPE----------------------GILSLPHVSIIDLSYNSFSGPIAN-TVGNARN  310 (840)
Q Consensus       272 ~l~~------------------~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~  310 (840)
                      .+++                  .+|.                      .+..+++|+.|+|++|++++..+. .+..+++
T Consensus       373 ~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  452 (844)
T 3j0a_A          373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS  452 (844)
T ss_dssp             CSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT
T ss_pred             CCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCc
Confidence            5442                  2221                      133688999999999999876544 4667899


Q ss_pred             Cceeecccceee-----eccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCE
Q 003199          311 LSELFMQRNQIS-----GFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNV  385 (840)
Q Consensus       311 L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  385 (840)
                      |+.|+|++|.++     +..+..+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++.++..+.  ++|+.
T Consensus       453 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~  530 (844)
T 3j0a_A          453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI  530 (844)
T ss_dssp             CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred             cccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence            999999999997     34456788899999999999999999999999999999999999999988777776  89999


Q ss_pred             EECcCccccccCCchhhccCCCeEEccCCCCcCcCCcc
Q 003199          386 LDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLS  423 (840)
Q Consensus       386 L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~p~~  423 (840)
                      |||++|+|++.+|..+.  .+..+++++|++.|.++..
T Consensus       531 L~Ls~N~l~~~~~~~~~--~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          531 LDISRNQLLAPNPDVFV--SLSVLDITHNKFICECELS  566 (844)
T ss_dssp             EEEEEECCCCCCSCCCS--SCCEEEEEEECCCCSSSCC
T ss_pred             EECCCCcCCCCChhHhC--CcCEEEecCCCcccccccH
Confidence            99999999999998775  4689999999999998853

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.3e-47  Score=441.85  Aligned_cols=416  Identities=19%  Similarity=0.252  Sum_probs=212.7

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCcc----C------CCCcc--------------------ccc-
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKL----W------KLPES--------------------SIF-   65 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l----~------~l~~~--------------------~~~-   65 (840)
                      .+++.|+|++|+++|.+|.++++|++|+.|+|++|.+...    .      .+|..                    .+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            5799999999999999999999999999999999943000    0      00000                    000 


Q ss_pred             ------------------ccccccEEEec--CccccccCCccccCCCCCcEEEccCCccccc-----------------C
Q 003199           66 ------------------RLTKLRIMVLA--TCALHGQIPASIGNVTSLTDLELTGNFITGH-----------------I  108 (840)
Q Consensus        66 ------------------~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~  108 (840)
                                        ....++.+.+.  +|.+++ +|..|+++++|++|+|++|.+++.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                              00001111111  344444 455555555555555555555542                 4


Q ss_pred             chhhh--cCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCc-ccc-cCCccccCC------CCCcEEEeeccccc
Q 003199          109 PPEIG--LLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNH-LSG-KIPESILRL------PKLRVLQLYNNSLS  178 (840)
Q Consensus       109 p~~~~--~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~N~l~  178 (840)
                      |..++  .+++|++|+|++|+ +.+.+|..|+++++|++|+|++|+ +++ .+|..+..+      ++|++|+|++|+++
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             chhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            55544  55555555555554 344455555555555555555554 544 444444443      55555555555555


Q ss_pred             cccch--hhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCC-chhhhcccccccccCCc
Q 003199          179 GEISS--VIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGK-LQYFLVLQNMFSGVLPD  255 (840)
Q Consensus       179 ~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~  255 (840)
                       .+|.  .+.++++|++|+|++|++++.+| .|..+++|+.|+|++|+++ .+|..+..+++ |++|++++|.+. .+|.
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence             3333  45555555555555555554444 4555555555555555555 44444555555 555555555555 3444


Q ss_pred             cccccc--CCceEEeeCceeeccCCcccc-------CCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccc
Q 003199          256 SLARCK--NLLRFRVSNNHLEGSIPEGIL-------SLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP  326 (840)
Q Consensus       256 ~~~~l~--~L~~L~l~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  326 (840)
                      .+..++  +|+.|++++|++++..|..+.       .+++|+.|+|++|+++...+..+..+++|++|+|++|+++ .+|
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~  473 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP  473 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence            444332  455555555555555554444       4445555555555555433333444555555555555555 333


Q ss_pred             hhhcccC--------cccEEEcCCCccCCCCCCccc--CccccchhcccCCccCCCcchhcccccCCCEEEC------cC
Q 003199          327 SEIYRAI--------SLVKIDLSDNLLSGPIPSGIG--NLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDL------SN  390 (840)
Q Consensus       327 ~~~~~l~--------~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l------~~  390 (840)
                      ..+....        +|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|      ++
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred             HHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence            3222211        4555555555555 3444443  55555555555555554 4455555555555555      33


Q ss_pred             ccccccCCchhhcc-CCCeEEccCCCCcCcCCcccccCCCcccccCCCCCccc
Q 003199          391 NLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVS  442 (840)
Q Consensus       391 N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~~~~~~~~~~~~n~~~c~~  442 (840)
                      |++.+.+|..+..+ .++.|++++|++ +.+|..+........+.+||+.|..
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCEEE
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCcccc
Confidence            44555555555444 344555555555 4445443333334445555555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-46  Score=432.14  Aligned_cols=426  Identities=21%  Similarity=0.240  Sum_probs=255.1

Q ss_pred             cccccccCC-CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccc
Q 003199            3 FMYLTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALH   81 (840)
Q Consensus         3 ~~~~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~   81 (840)
                      .|.+++..+ .|.++++|++|+|++|.|++..|..|.++++|++|+|++|   .+..+++..|.++++|++|++++|.++
T Consensus        37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~  113 (570)
T 2z63_A           37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVAVETNLA  113 (570)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC---CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC---cCCccCHhhhcCccccccccccccccc
Confidence            344444444 3556666666666666666555555666666666666666   445555555666666666666666665


Q ss_pred             ccCCccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCeeecccCccccccCCcccCCCCCC----CeeeccCCccccc
Q 003199           82 GQIPASIGNVTSLTDLELTGNFITG-HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL----TDLDMSVNHLSGK  156 (840)
Q Consensus        82 ~~~~~~~~~l~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L----~~L~L~~n~l~~~  156 (840)
                      +..+..++++++|++|+|++|.+++ .+|..|.++++|++|++++|+ +.+..+..+..+++|    ++|++++|.+++.
T Consensus       114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~  192 (570)
T 2z63_A          114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  192 (570)
T ss_dssp             CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceec
Confidence            4444455666666666666666654 245556666666666666654 333334445555555    5556666655554


Q ss_pred             CCccccCCCCCcEEEeecc----------------------------------------------------------ccc
Q 003199          157 IPESILRLPKLRVLQLYNN----------------------------------------------------------SLS  178 (840)
Q Consensus       157 ~~~~~~~l~~L~~L~L~~N----------------------------------------------------------~l~  178 (840)
                      .+..|..+ +|+.|++++|                                                          .+.
T Consensus       193 ~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~  271 (570)
T 2z63_A          193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL  271 (570)
T ss_dssp             CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEE
T ss_pred             CHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhh
Confidence            44444433 4555555554                                                          222


Q ss_pred             cccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccc
Q 003199          179 GEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLA  258 (840)
Q Consensus       179 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  258 (840)
                      +..+..|..+++|++|++++|.++ .+|..+..+ +|+.|++++|.+. .+|.  ..+++|+.|++.+|.+.+..+.  .
T Consensus       272 ~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~  344 (570)
T 2z63_A          272 DDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--V  344 (570)
T ss_dssp             SCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--C
T ss_pred             hhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--c
Confidence            233445566677777777777777 466666666 7777777777776 3333  3455566666666665544443  5


Q ss_pred             cccCCceEEeeCceeeccC--CccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccc-hhhcccCcc
Q 003199          259 RCKNLLRFRVSNNHLEGSI--PEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIP-SEIYRAISL  335 (840)
Q Consensus       259 ~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L  335 (840)
                      .+++|++|++++|++++..  |..+..+++|+.|++++|++.+..+. +..+++|++|++++|.+.+..| ..+..+++|
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            5666777777777666433  45566666777777777766655444 6666677777777777665544 355666677


Q ss_pred             cEEEcCCCccCCCCCCcccCccccchhcccCCccC-CCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccC
Q 003199          336 VKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLN-SSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSN  413 (840)
Q Consensus       336 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~  413 (840)
                      +.|++++|++++..|..+.++++|+.|+|++|+++ +.+|..+..+++|++|+|++|++++..|..+..+ .++.|++++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            77777777766666666666677777777777665 4566666667777777777777766666666655 456677777


Q ss_pred             CCCcCcCCcccccC--CCcccccCCCCCcc
Q 003199          414 NRLSGPIPLSLIKE--GLVESFSGNPGLCV  441 (840)
Q Consensus       414 N~l~~~~p~~~~~~--~~~~~~~~n~~~c~  441 (840)
                      |++++..|..+...  .....+.+||+.|.
T Consensus       504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            77666655433322  13445666666663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.9e-45  Score=434.41  Aligned_cols=416  Identities=20%  Similarity=0.215  Sum_probs=277.5

Q ss_pred             cccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccc
Q 003199            3 FMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALH   81 (840)
Q Consensus         3 ~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~   81 (840)
                      .|.+++..+. |+++++|++|+|++|.+++..|..|.++++|++|+|++|   .+..+++..|..+++|++|++++|.++
T Consensus        82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS---CCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC---cccccCchhhcccccCCEEEccCCccc
Confidence            3444444432 666666666666666666555555666666666666666   344444444444555555555544444


Q ss_pred             c--------------------------cCCccccCC---------------------------CCCcEEEccCCcccccC
Q 003199           82 G--------------------------QIPASIGNV---------------------------TSLTDLELTGNFITGHI  108 (840)
Q Consensus        82 ~--------------------------~~~~~~~~l---------------------------~~L~~L~L~~n~i~~~~  108 (840)
                      +                          ..|..+..+                           ++|+.|++++|.+++..
T Consensus       159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~  238 (680)
T 1ziw_A          159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS  238 (680)
T ss_dssp             CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred             ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence            3                          333322221                           22233333333333333


Q ss_pred             chhhhcCCC--CCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccc-------------------------
Q 003199          109 PPEIGLLKN--LRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI-------------------------  161 (840)
Q Consensus       109 p~~~~~l~~--L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~-------------------------  161 (840)
                      |..|..++.  |+.|+|++|+ +.+..|..|..+++|++|+|++|++++..|..|                         
T Consensus       239 ~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l  317 (680)
T 1ziw_A          239 NTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL  317 (680)
T ss_dssp             TTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred             hhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence            334444433  6666666665 344445556666666666666666665544433                         


Q ss_pred             --------cCCCCCcEEEeeccccccccchhhhcCCCCCEEEcc----------------------------CCcCcccC
Q 003199          162 --------LRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLY----------------------------DNSLTGEV  205 (840)
Q Consensus       162 --------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~----------------------------~N~l~~~~  205 (840)
                              ..+++|++|++++|.+++..+..|.++++|++|+++                            +|+++++.
T Consensus       318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~  397 (680)
T 1ziw_A          318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE  397 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred             cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence                    344555555555555555555555555555444444                            34444445


Q ss_pred             CcCCCCCCCcceeccccccccccCC-ccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceee--ccCCcccc
Q 003199          206 PQDLGQWSPLVVLDLSENKLSGPLP-AKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLE--GSIPEGIL  282 (840)
Q Consensus       206 ~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~  282 (840)
                      +..|..+++|+.|+|++|++++.++ ..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.  +..|..|.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            5556666666666666666655443 45666666666666666666666666666777777777777665  46788889


Q ss_pred             CCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccch--------hhcccCcccEEEcCCCccCCCCCCccc
Q 003199          283 SLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPS--------EIYRAISLVKIDLSDNLLSGPIPSGIG  354 (840)
Q Consensus       283 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~p~~~~  354 (840)
                      .+++|+.|++++|++++..+..|..+++|++|+|++|++++..+.        .+..+++|+.|+|++|+++...+..|.
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            999999999999999999999999999999999999999865332        378889999999999999965556799


Q ss_pred             CccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhh-cc-CCCeEEccCCCCcCcCCc
Q 003199          355 NLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLC-EL-LPNSINFSNNRLSGPIPL  422 (840)
Q Consensus       355 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~~-~~~~l~l~~N~l~~~~p~  422 (840)
                      ++++|+.|+|++|+|++.++..|..+++|+.|+|++|+|++..|..+. .+ .++.+++++|++.|.++.
T Consensus       558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999999999988888899999999999999999987777665 33 578999999999999884

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-45  Score=432.65  Aligned_cols=407  Identities=20%  Similarity=0.275  Sum_probs=322.2

Q ss_pred             CccccccccCCC-CCCCCCCCEEecCCCcCc------c---------------------------cCCcccc--------
Q 003199            1 MSFMYLTGTLPD-FSPMQNLRRLDLSNNLFT------G---------------------------QFPLSVF--------   38 (840)
Q Consensus         1 ~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~------~---------------------------~~p~~~~--------   38 (840)
                      ++.+.+.|.+|. |+.|++|++|+|++|.++      +                           .+|..+.        
T Consensus        88 L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~  167 (636)
T 4eco_A           88 LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN  167 (636)
T ss_dssp             CTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred             ecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhh
Confidence            355788999986 999999999999999762      1                           1111111        


Q ss_pred             -----------CCCCCCEEeCC--CCCCCccCCCCcccccccccccEEEecCcccccc-----------------CCccc
Q 003199           39 -----------NLTNLEVLSFN--ENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQ-----------------IPASI   88 (840)
Q Consensus        39 -----------~l~~L~~L~L~--~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~   88 (840)
                                 ....++.+.+.  .|   .+..+|. .|.++++|++|+|++|.+++.                 +|..+
T Consensus       168 ~~l~~~~~~~~~~~~l~~l~l~~~~n---~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l  243 (636)
T 4eco_A          168 SDPQQKSIKKSSRITLKDTQIGQLSN---NITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL  243 (636)
T ss_dssp             HCTTSCCCCCCCCCCCCTTTTTCCSC---EEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             cCccccccccccccchhhhhhccccC---CCccCCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence                       11122222222  34   5555654 588888888888888888875                 88888


Q ss_pred             c--CCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccc-cCCcccCCC------CCCCeeeccCCcccccCCc
Q 003199           89 G--NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAG-TIPEELGNL------TELTDLDMSVNHLSGKIPE  159 (840)
Q Consensus        89 ~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~~~  159 (840)
                      +  ++++|++|+|++|.+.+.+|..|.++++|++|+|++|+.+.+ .+|..++.+      ++|++|+|++|+++ .+|.
T Consensus       244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence            8  888888888888888888888888888888888888864555 677777665      88888888888888 6777


Q ss_pred             --cccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCC-cceeccccccccccCCccccCC
Q 003199          160 --SILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSP-LVVLDLSENKLSGPLPAKVCSR  236 (840)
Q Consensus       160 --~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~l  236 (840)
                        .+..+++|++|++++|++++.+| .|..+++|++|+|++|+++ .+|..+..+++ |++|+|++|+++ .+|..+...
T Consensus       323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~  399 (636)
T 4eco_A          323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK  399 (636)
T ss_dssp             HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTT
T ss_pred             hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhc
Confidence              78888888888888888886677 7888888888888888888 67777888888 888888888888 667777665


Q ss_pred             C--CchhhhcccccccccCCcccc-------cccCCceEEeeCceeeccCCcc-ccCCCcccEEeccCCcccccCCcccC
Q 003199          237 G--KLQYFLVLQNMFSGVLPDSLA-------RCKNLLRFRVSNNHLEGSIPEG-ILSLPHVSIIDLSYNSFSGPIANTVG  306 (840)
Q Consensus       237 ~--~L~~L~l~~n~~~~~~~~~~~-------~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~  306 (840)
                      .  +|++|++++|.+.+..|..+.       .+++|++|++++|+++ .+|.. +..+++|+.|+|++|+++...+..+.
T Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  478 (636)
T 4eco_A          400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLK  478 (636)
T ss_dssp             CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred             ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence            4  788888888888888888887       7788999999999998 45544 45688999999999999855555554


Q ss_pred             CCC-------CCceeecccceeeeccchhhc--ccCcccEEEcCCCccCCCCCCcccCccccchhcc------cCCccCC
Q 003199          307 NAR-------NLSELFMQRNQISGFIPSEIY--RAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLML------QSNKLNS  371 (840)
Q Consensus       307 ~l~-------~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~  371 (840)
                      ...       +|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|      ++|++.+
T Consensus       479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~  556 (636)
T 4eco_A          479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR  556 (636)
T ss_dssp             ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred             cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence            433       8999999999998 6777776  88999999999999986 8888888999999998      5677888


Q ss_pred             CcchhcccccCCCEEECcCccccccCCchhhccCCCeEEccCCCCcCcC
Q 003199          372 SIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPI  420 (840)
Q Consensus       372 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~  420 (840)
                      .+|..+..+++|++|+|++|++ +.+|..+. -.++.|++++|++....
T Consensus       557 ~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          557 EWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEEE
T ss_pred             cChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcccc
Confidence            9999999999999999999999 58888766 46789999999877543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-45  Score=436.38  Aligned_cols=414  Identities=21%  Similarity=0.247  Sum_probs=351.7

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeC-CCCCC------------------------------------------
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSF-NENPG------------------------------------------   53 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L-~~N~~------------------------------------------   53 (840)
                      ..++.|+|++|+++|.+|..|++|++|+.|+| ++|.+                                          
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57889999999999999999999999999999 66621                                          


Q ss_pred             --------------------------------CccCCCCcccccccccccEEEecCccccc-----------------cC
Q 003199           54 --------------------------------FKLWKLPESSIFRLTKLRIMVLATCALHG-----------------QI   84 (840)
Q Consensus        54 --------------------------------~~l~~l~~~~~~~l~~L~~L~L~~n~l~~-----------------~~   84 (840)
                                                      ..+..+|. .|.++++|+.|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                            01222554 59999999999999999998                 38


Q ss_pred             Ccccc--CCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccc-cCCcccCCC-------CCCCeeeccCCccc
Q 003199           85 PASIG--NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAG-TIPEELGNL-------TELTDLDMSVNHLS  154 (840)
Q Consensus        85 ~~~~~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~p~~l~~l-------~~L~~L~L~~n~l~  154 (840)
                      |..++  ++++|++|+|++|.+.+.+|..|..+++|+.|+|++|+.+.+ .+|..++.+       ++|++|+|++|+++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            99988  999999999999999999999999999999999999974555 677655544       59999999999999


Q ss_pred             ccCCc--cccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCC-cceeccccccccccCCc
Q 003199          155 GKIPE--SILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSP-LVVLDLSENKLSGPLPA  231 (840)
Q Consensus       155 ~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~  231 (840)
                       .+|.  .|..+++|+.|+|++|+++ .+| .|..+++|++|+|++|+++ .+|..+..+++ |+.|+|++|+++ .+|.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence             7888  8999999999999999999 556 8999999999999999999 78888999999 999999999999 6788


Q ss_pred             cccCCCC--chhhhcccccccccCCccc---c--cccCCceEEeeCceeeccCCcccc-CCCcccEEeccCCcccccCCc
Q 003199          232 KVCSRGK--LQYFLVLQNMFSGVLPDSL---A--RCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSFSGPIAN  303 (840)
Q Consensus       232 ~~~~l~~--L~~L~l~~n~~~~~~~~~~---~--~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~  303 (840)
                      .+.....  |+.|++++|.+.+.+|...   .  .+++|+.|+|++|.++ .+|..+. .+++|+.|+|++|+++.....
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~  715 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPEN  715 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChH
Confidence            8877754  9999999999998766432   2  3458999999999999 6676654 789999999999999965555


Q ss_pred             ccCCC-------CCCceeecccceeeeccchhhc--ccCcccEEEcCCCccCCCCCCcccCccccchhcccC------Cc
Q 003199          304 TVGNA-------RNLSELFMQRNQISGFIPSEIY--RAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS------NK  368 (840)
Q Consensus       304 ~~~~l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~  368 (840)
                      .+...       ++|+.|+|++|+|+ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |+
T Consensus       716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~  793 (876)
T 4ecn_A          716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR  793 (876)
T ss_dssp             SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred             HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence            55433       39999999999999 7888887  99999999999999997 799999999999999976      88


Q ss_pred             cCCCcchhcccccCCCEEECcCccccccCCchhhccCCCeEEccCCCCcCcCCcccccC--CCcccccCCCCCcc
Q 003199          369 LNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKE--GLVESFSGNPGLCV  441 (840)
Q Consensus       369 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~p~~~~~~--~~~~~~~~n~~~c~  441 (840)
                      +.+.+|..|..+++|+.|+|++|+| +.+|..+.. .++.|++++|++....+..+...  .....+.+|++.|.
T Consensus       794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~-~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I  866 (876)
T 4ecn_A          794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTP-QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI  866 (876)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCS-SSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred             ccccChHHHhcCCCCCEEECCCCCC-CccCHhhcC-CCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence            8899999999999999999999999 689988764 67899999999986655443221  13456667777663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-45  Score=426.68  Aligned_cols=409  Identities=20%  Similarity=0.238  Sum_probs=358.4

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      +++++|+|++|.|++..+.+|.++++|++|+|++|   .+..+++..|.++++|++|+|++|.+++..|..|+++++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n---~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCC---cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            57999999999999888889999999999999999   778888889999999999999999999888899999999999


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCC----cEEEe
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKL----RVLQL  172 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L  172 (840)
                      |+|++|.+++..+..|+.+++|++|+|++|.+....+|..|+++++|++|++++|.+++..+..+..+++|    +.|++
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            99999999966666799999999999999984333578999999999999999999998888888888888    89999


Q ss_pred             eccccccccchhhhcCCCCCEEEccCC-----------------------------------------------------
Q 003199          173 YNNSLSGEISSVIANSTTLTMLSLYDN-----------------------------------------------------  199 (840)
Q Consensus       173 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-----------------------------------------------------  199 (840)
                      ++|.+.+..+..|... +|+.|++++|                                                     
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            9999998888888766 7999988887                                                     


Q ss_pred             -----cCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceee
Q 003199          200 -----SLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLE  274 (840)
Q Consensus       200 -----~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~  274 (840)
                           .+.+..+..+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|.  ..+++|+.|++++|.+.
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~  338 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGG  338 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSC
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccc
Confidence                 333455677788899999999999998 577778888 9999999999998 4444  47889999999999998


Q ss_pred             ccCCccccCCCcccEEeccCCcccccC--CcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCC-C
Q 003199          275 GSIPEGILSLPHVSIIDLSYNSFSGPI--ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIP-S  351 (840)
Q Consensus       275 ~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~  351 (840)
                      +..+.  ..+++|+.|++++|++++..  +..+..+++|++|++++|++.+..+. +..+++|+.|++++|.+++..| .
T Consensus       339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred             ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence            66554  78999999999999998764  67788999999999999999976555 9999999999999999998766 5


Q ss_pred             cccCccccchhcccCCccCCCcchhcccccCCCEEECcCcccc-ccCCchhhcc-CCCeEEccCCCCcCcCCcccccCC-
Q 003199          352 GIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT-GYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKEG-  428 (840)
Q Consensus       352 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~~~~~-  428 (840)
                      .+.++++|+.|+|++|++++..|..|..+++|++|+|++|.++ +.+|..+..+ .++.|++++|++++..|..+.... 
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            7899999999999999999999999999999999999999998 6789888877 578999999999998887654432 


Q ss_pred             -CcccccCCC
Q 003199          429 -LVESFSGNP  437 (840)
Q Consensus       429 -~~~~~~~n~  437 (840)
                       ....+.+|.
T Consensus       496 L~~L~l~~n~  505 (570)
T 2z63_A          496 LQVLNMASNQ  505 (570)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEeCCCCc
Confidence             345566664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.7e-45  Score=435.53  Aligned_cols=403  Identities=21%  Similarity=0.270  Sum_probs=348.3

Q ss_pred             CccccccccCCC-CCCCCCCCEEec-CCCcCccc----------------------------------------------
Q 003199            1 MSFMYLTGTLPD-FSPMQNLRRLDL-SNNLFTGQ----------------------------------------------   32 (840)
Q Consensus         1 ~~~~~~~~~~~~-~~~l~~L~~L~L-s~n~i~~~----------------------------------------------   32 (840)
                      ++.+.+.|.+|. |+.|++|++|+| ++|.+.+.                                              
T Consensus       330 Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~  409 (876)
T 4ecn_A          330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN  409 (876)
T ss_dssp             CTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred             CccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence            355788999996 999999999999 77755433                                              


Q ss_pred             ------------------------------CCccccCCCCCCEEeCCCCCCCccCC------------------CCccc-
Q 003199           33 ------------------------------FPLSVFNLTNLEVLSFNENPGFKLWK------------------LPESS-   63 (840)
Q Consensus        33 ------------------------------~p~~~~~l~~L~~L~L~~N~~~~l~~------------------l~~~~-   63 (840)
                                                    +|..|+++++|+.|+|++|   .+..                  +|... 
T Consensus       410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N---~Lsg~~i~~~~~~~s~n~~~g~iP~~l~  486 (876)
T 4ecn_A          410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS---PFTYDNIAVDWEDANSDYAKQYENEELS  486 (876)
T ss_dssp             TCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC---CCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             hCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC---cCCCCcccccccccccccccccCChhhh
Confidence                                          7889999999999999999   5555                  66653 


Q ss_pred             ccccccccEEEecCccccccCCccccCCCCCcEEEccCCc-ccc-cCchhhhcCC-------CCCeeecccCccccccCC
Q 003199           64 IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNF-ITG-HIPPEIGLLK-------NLRQLELYYNQQLAGTIP  134 (840)
Q Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~p~~~~~l~-------~L~~L~L~~n~~~~~~~p  134 (840)
                      |.++++|+.|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+..++       +|+.|+|++|+ +. .+|
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~-~ip  564 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE-EFP  564 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC-BCC
T ss_pred             hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC-ccC
Confidence            4499999999999999999999999999999999999998 987 7888888776       99999999998 33 888


Q ss_pred             c--ccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCC-CCEEEccCCcCcccCCcCCCC
Q 003199          135 E--ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTT-LTMLSLYDNSLTGEVPQDLGQ  211 (840)
Q Consensus       135 ~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~l~~  211 (840)
                      .  .+.++++|++|+|++|+++ .+| .|..+++|+.|+|++|+++ .+|..+..+++ |++|+|++|+++ .+|..+..
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~  640 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA  640 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred             ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence            8  8999999999999999999 777 8999999999999999999 67778999999 999999999999 67888877


Q ss_pred             CCC--cceeccccccccccCCcccc-----CCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCC
Q 003199          212 WSP--LVVLDLSENKLSGPLPAKVC-----SRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSL  284 (840)
Q Consensus       212 l~~--L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l  284 (840)
                      ++.  |+.|+|++|++++.+|...+     ...+|+.|++++|.+....+..+..+++|+.|+|++|+++ .+|..+...
T Consensus       641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~  719 (876)
T 4ecn_A          641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP  719 (876)
T ss_dssp             TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC
T ss_pred             cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcc
Confidence            654  99999999999987664332     3458999999999999554455568999999999999999 677655543


Q ss_pred             --------CcccEEeccCCcccccCCcccC--CCCCCceeecccceeeeccchhhcccCcccEEEcCC------CccCCC
Q 003199          285 --------PHVSIIDLSYNSFSGPIANTVG--NARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSD------NLLSGP  348 (840)
Q Consensus       285 --------~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~  348 (840)
                              ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|+|++ +|..+..+++|+.|+|++      |++.+.
T Consensus       720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~  797 (876)
T 4ecn_A          720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ  797 (876)
T ss_dssp             TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred             ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc
Confidence                    29999999999999 5666676  89999999999999997 799999999999999977      888889


Q ss_pred             CCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCCCCcC
Q 003199          349 IPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSG  418 (840)
Q Consensus       349 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~  418 (840)
                      +|..+.++++|+.|+|++|+| +.+|..+.  ++|+.|||++|++....+..++.. ....+.+.+|++..
T Consensus       798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            999999999999999999999 68888765  699999999999997767776665 45667788887653

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-45  Score=400.92  Aligned_cols=267  Identities=21%  Similarity=0.301  Sum_probs=200.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec-
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS-  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-  603 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....        .....+.+.+|+++|+.++|||||++++++.. 
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~--------~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~  125 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD--------VVTNAKRTLRELKILKHFKHDNIIAIKDILRPT  125 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS--------SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCS
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc--------chHHHHHHHHHHHHHHhcCCCCcceEeeeeecc
Confidence            4688899999999999999955 5899999999954321        12335678899999999999999999998754 


Q ss_pred             -----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          604 -----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       604 -----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                           ....|+|||||+ |+|.+++.... .+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+||+
T Consensus       126 ~~~~~~~~~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NIl~~~~~~~Ki~  200 (398)
T 4b99_A          126 VPYGEFKSVYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIG  200 (398)
T ss_dssp             SCTTTCCCEEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEEC
T ss_pred             cccccCCEEEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CcCcCCCcCccccccCCCCCEEEe
Confidence                 356799999995 78999998764 79999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCC-CCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          679 DFGIAKVLQARGG-KDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       679 Dfg~a~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |||+|+.+..... ........+||+.|||||++.+. .++.++||||+||++|||++|+.||.+.... ..+.......
T Consensus       201 DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~-~~l~~I~~~~  279 (398)
T 4b99_A          201 DFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV-HQLQLIMMVL  279 (398)
T ss_dssp             CCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHHH
T ss_pred             ecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH-HHHHHHHHhc
Confidence            9999987643211 22334567899999999998775 5699999999999999999999999763210 0000000000


Q ss_pred             hccc-cc--------hhh---hcccccCCCcH----HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          757 VDTK-EG--------IME---VLDKKLSGSFR----DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       757 ~~~~-~~--------~~~---~~~~~~~~~~~----~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .... ..        ...   ......+..+.    ....++.+|+.+|+..||++|||+.|+++|
T Consensus       280 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          280 GTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             CCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             CCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            0000 00        000   00001111111    123467788999999999999999999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-44  Score=419.25  Aligned_cols=412  Identities=20%  Similarity=0.175  Sum_probs=308.9

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      ++|++|+|++|.|++..|..|.++++|++|+|++|   .+..+++..|.++++|++|+|++|.+++..|..|+++++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n---~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS---RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCC---CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence            78999999999999888999999999999999999   777888889999999999999999999887788999999999


Q ss_pred             EEccCCccccc-CchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecc
Q 003199           97 LELTGNFITGH-IPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN  175 (840)
Q Consensus        97 L~L~~n~i~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  175 (840)
                      |+|++|.+++. .|..|..+++|++|++++|+.+....+..+.++++|++|++++|.+++..|..+..+++|++|+++.|
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            99999999863 56789999999999999997444444468999999999999999999989999999999999999999


Q ss_pred             ccccccchhhhcCCCCCEEEccCCcCcccC--C-cCCCCCCCcceeccccccccccCCccc----cC-------------
Q 003199          176 SLSGEISSVIANSTTLTMLSLYDNSLTGEV--P-QDLGQWSPLVVLDLSENKLSGPLPAKV----CS-------------  235 (840)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~-~~l~~l~~L~~L~L~~N~l~~~~~~~~----~~-------------  235 (840)
                      .+.......+..+++|++|++++|++++..  + .....+++|+.|++++|.+++..+..+    ..             
T Consensus       183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            988665555677999999999999998642  1 222345566666666665543221111    11             


Q ss_pred             ----------------------------------------------CCCchhhhcccccccccCCccc-ccccCCceEEe
Q 003199          236 ----------------------------------------------RGKLQYFLVLQNMFSGVLPDSL-ARCKNLLRFRV  268 (840)
Q Consensus       236 ----------------------------------------------l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l  268 (840)
                                                                    .++|+.|++++|.+. .+|..+ ..+++|++|++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~L  341 (549)
T 2z81_A          263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL  341 (549)
T ss_dssp             EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEEC
T ss_pred             ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEc
Confidence                                                          234555555555554 334333 45677777777


Q ss_pred             eCceeeccCC---ccccCCCcccEEeccCCcccccCC--cccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCC
Q 003199          269 SNNHLEGSIP---EGILSLPHVSIIDLSYNSFSGPIA--NTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDN  343 (840)
Q Consensus       269 ~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  343 (840)
                      ++|++++..|   ..+..+++|+.|++++|++++..+  ..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|
T Consensus       342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N  420 (549)
T 2z81_A          342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST  420 (549)
T ss_dssp             CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTS
T ss_pred             cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCC
Confidence            7777765443   235566777777777777765432  34666777777777777776 45666666677777777777


Q ss_pred             ccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhccCCCeEEccCCCCcCcCCcc
Q 003199          344 LLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLS  423 (840)
Q Consensus       344 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~p~~  423 (840)
                      +++ .+|..+.  ++|+.|+|++|+|++.+    ..+++|++|+|++|+|+ .+|....-..++.|++++|++++..|..
T Consensus       421 ~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~  492 (549)
T 2z81_A          421 GIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGI  492 (549)
T ss_dssp             CCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTG
T ss_pred             Ccc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHH
Confidence            766 3343332  46777777777776532    47889999999999998 7776433226789999999999988865


Q ss_pred             cccCC--CcccccCCCCCcc
Q 003199          424 LIKEG--LVESFSGNPGLCV  441 (840)
Q Consensus       424 ~~~~~--~~~~~~~n~~~c~  441 (840)
                      +....  ....+.+|||.|.
T Consensus       493 ~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          493 FDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             GGGCTTCCEEECCSSCBCCC
T ss_pred             HhcCcccCEEEecCCCccCC
Confidence            54432  4568889999884

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.2e-44  Score=390.35  Aligned_cols=200  Identities=24%  Similarity=0.386  Sum_probs=168.2

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      +.+.|+..+.||+|+||+||+|..+    +++.||||++....            ....+.+|+++++.+ .|||||+++
T Consensus        19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~------------~~~~~~~E~~~l~~~~~h~nIv~l~   86 (361)
T 4f9c_A           19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS------------HPIRIAAELQCLTVAGGQDNVMGVK   86 (361)
T ss_dssp             GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS------------CHHHHHHHHHHHHHTCSBTTBCCCS
T ss_pred             ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc------------CHHHHHHHHHHHHHhcCCCCCceEE
Confidence            3467999999999999999999542    47899999884332            124577899999988 699999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC-CCCee
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKV  677 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl  677 (840)
                      +++.+.+..++||||+++|+|.+++.    .+++.++..++.|++.||+|||+   +|||||||||+|||++.+ +.+||
T Consensus        87 ~~~~~~~~~~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiLl~~~~~~~kl  159 (361)
T 4f9c_A           87 YCFRKNDHVVIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFLYNRRLKKYAL  159 (361)
T ss_dssp             EEEEETTEEEEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEE
T ss_pred             EEEEECCEEEEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeEEeCCCCeEEE
Confidence            99999999999999999999999984    48999999999999999999999   999999999999999876 79999


Q ss_pred             ecccchhhhhccCCC-------------------------CcceecccccccccCccccccC-CCCccccchhHHHHHHH
Q 003199          678 ADFGIAKVLQARGGK-------------------------DSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLME  731 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~-------------------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~e  731 (840)
                      +|||+|+...+....                         .......+||+.|||||++.+. .++.++||||+||++||
T Consensus       160 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~e  239 (361)
T 4f9c_A          160 VDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLS  239 (361)
T ss_dssp             CCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHH
T ss_pred             CcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHH
Confidence            999999765331100                         1122345799999999998775 58999999999999999


Q ss_pred             HHhCCCCCCCC
Q 003199          732 LITGRKPVEDD  742 (840)
Q Consensus       732 l~tg~~p~~~~  742 (840)
                      |++|+.||...
T Consensus       240 ll~G~~Pf~~~  250 (361)
T 4f9c_A          240 LLSGRYPFYKA  250 (361)
T ss_dssp             HHHTCSSSSCC
T ss_pred             HHHCCCCCCCC
Confidence            99999999643

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.2e-44  Score=409.55  Aligned_cols=255  Identities=22%  Similarity=0.298  Sum_probs=200.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++........    ...........++.+++.++|||||++++++.+.
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~----~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~  264 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMK----QGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP  264 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHT----TCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchh----hhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEEC
Confidence            4688889999999999999965 4799999999954332110    1112222334456778888999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..|+|||||+||+|.+++.+.. .+++..+..++.||+.||+|||+   ++||||||||+|||++.+|++||+|||+|+
T Consensus       265 ~~lylVmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPeNILld~~G~vKL~DFGlA~  340 (689)
T 3v5w_A          265 DKLSFILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLAC  340 (689)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHeEEeCCCCEEecccceee
Confidence            99999999999999999998765 69999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .+..     ......+||+.|||||++.+ ..|+.++||||+||++|||++|+.||.+.......  ........     
T Consensus       341 ~~~~-----~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~--~i~~~i~~-----  408 (689)
T 3v5w_A          341 DFSK-----KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH--EIDRMTLT-----  408 (689)
T ss_dssp             ECSS-----CCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHH--HHHHHHHH-----
T ss_pred             ecCC-----CCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH--HHHHhhcC-----
Confidence            7633     22345689999999999964 57999999999999999999999999753221111  11111100     


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~  806 (840)
                         ....++..+   ..++.+++.+|++.||++|++     ++||++|
T Consensus       409 ---~~~~~p~~~---S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H  450 (689)
T 3v5w_A          409 ---MAVELPDSF---SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  450 (689)
T ss_dssp             ---CCCCCCTTS---CHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred             ---CCCCCCccC---CHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence               011122222   345667788999999999998     7888876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.9e-44  Score=414.93  Aligned_cols=407  Identities=20%  Similarity=0.218  Sum_probs=328.3

Q ss_pred             CccccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc
Q 003199            1 MSFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA   79 (840)
Q Consensus         1 ~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~   79 (840)
                      ++.|.+++..|. |.++++|++|+|++|.|++..|.+|.++++|++|+|++|   .+..+++..|..+++|++|+|++|.
T Consensus        33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN---HLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS---CCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC---ccCccCHHHhccCCCCcEEECCCCc
Confidence            456788888775 999999999999999999888899999999999999999   7888888889999999999999999


Q ss_pred             ccc-cCCccccCCCCCcEEEccCCc-ccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccC
Q 003199           80 LHG-QIPASIGNVTSLTDLELTGNF-ITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKI  157 (840)
Q Consensus        80 l~~-~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~  157 (840)
                      +++ ..|..++++++|++|+|++|. +....+..|..+++|++|++++|+ +.+..|..+..+++|++|++++|.+....
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  188 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLL  188 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccCcccccc
Confidence            986 357789999999999999998 554445789999999999999998 66677888888888888888777776333


Q ss_pred             CccccCCCCCcEEEeecccccccc-------------------------------chhhhcCCCCCEEEccCCcCcccCC
Q 003199          158 PESILRLPKLRVLQLYNNSLSGEI-------------------------------SSVIANSTTLTMLSLYDNSLTGEVP  206 (840)
Q Consensus       158 ~~~~~~l~~L~~L~L~~N~l~~~~-------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~  206 (840)
                      ...+..+++|++|++++|++++..                               +..+..+++|+.|++++|.+.+...
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~  268 (549)
T 2z81_A          189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD  268 (549)
T ss_dssp             HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred             hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence            223345777777777777776531                               1122344555666666655543210


Q ss_pred             ---------cCC--------------------------CCCCCcceeccccccccccCCccc-cCCCCchhhhccccccc
Q 003199          207 ---------QDL--------------------------GQWSPLVVLDLSENKLSGPLPAKV-CSRGKLQYFLVLQNMFS  250 (840)
Q Consensus       207 ---------~~l--------------------------~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~n~~~  250 (840)
                               ..+                          ....+|+.|++++|+++ .+|..+ ..+++|++|++++|.+.
T Consensus       269 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~  347 (549)
T 2z81_A          269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV  347 (549)
T ss_dssp             CCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCC
T ss_pred             ccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccc
Confidence                     001                          11246888888888887 456555 57999999999999999


Q ss_pred             ccCC---cccccccCCceEEeeCceeeccCC--ccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeecc
Q 003199          251 GVLP---DSLARCKNLLRFRVSNNHLEGSIP--EGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFI  325 (840)
Q Consensus       251 ~~~~---~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  325 (840)
                      +..|   ..++.+++|++|++++|++++..+  ..+..+++|+.|++++|+++ .+|..+..+++|++|+|++|++++ +
T Consensus       348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l  425 (549)
T 2z81_A          348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-V  425 (549)
T ss_dssp             HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-C
T ss_pred             cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-c
Confidence            8764   347889999999999999985432  45888999999999999999 467788899999999999999984 4


Q ss_pred             chhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-
Q 003199          326 PSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-  404 (840)
Q Consensus       326 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-  404 (840)
                      |..+.  ++|+.|+|++|++++.+    ..+++|+.|+|++|+|+ .+|. ...+++|++|||++|+|++.+|..+..+ 
T Consensus       426 ~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  497 (549)
T 2z81_A          426 KTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT  497 (549)
T ss_dssp             CTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred             cchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence            54442  58999999999999643    57899999999999998 5665 4679999999999999999888888877 


Q ss_pred             CCCeEEccCCCCcCcCCc
Q 003199          405 LPNSINFSNNRLSGPIPL  422 (840)
Q Consensus       405 ~~~~l~l~~N~l~~~~p~  422 (840)
                      .++.|++++|++.|.+|.
T Consensus       498 ~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          498 SLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             TCCEEECCSSCBCCCHHH
T ss_pred             ccCEEEecCCCccCCCcc
Confidence            578999999999999983

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=5.7e-44  Score=408.77  Aligned_cols=254  Identities=21%  Similarity=0.343  Sum_probs=206.8

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +.++|+..+.||+|+||+||+|.. .+|+.||||++....          ....+.+.+|+.+|+.++|||||++++++.
T Consensus       155 il~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~----------~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~  224 (573)
T 3uto_A          155 VLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH----------ESDKETVRKEIQTMSVLRHPTLVNLHDAFE  224 (573)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----------HHHHHHHHHHHHHHHHTCCTTBCCEEEEEE
T ss_pred             CccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc----------hhhHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence            346799999999999999999955 579999999985432          223467889999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC--CCCeeecc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN--YQPKVADF  680 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~--~~~kl~Df  680 (840)
                      +....++|||||++|+|.+++......+++.++..++.||+.||+|||+   ++|+||||||+|||++.+  +.+||+||
T Consensus       225 ~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DF  301 (573)
T 3uto_A          225 DDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDF  301 (573)
T ss_dssp             CSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCC
T ss_pred             ECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhccccCCCCCCEEEeec
Confidence            9999999999999999999997665579999999999999999999999   999999999999999854  78999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |+|+.+..    .......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+...  ...   ........
T Consensus       302 G~a~~~~~----~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~--~~~---~~~i~~~~  372 (573)
T 3uto_A          302 GLTAHLDP----KQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND--DET---LRNVKSCD  372 (573)
T ss_dssp             SSCEECCT----TSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHH---HHHHHTTC
T ss_pred             cceeEccC----CCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHH---HHHHHhCC
Confidence            99987632    3344566899999999999999999999999999999999999999975311  111   10000000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..    ..   ...+......+.+++.+||+.||.+|||+.|+++|
T Consensus       373 ~~----~~---~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H  411 (573)
T 3uto_A          373 WN----MD---DSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH  411 (573)
T ss_dssp             CC----CC---SGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CC----CC---cccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            00    00   01112223456678889999999999999999986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1e-42  Score=393.08  Aligned_cols=370  Identities=19%  Similarity=0.157  Sum_probs=236.9

Q ss_pred             EEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccc-cCCccccCCCCCcEEEc
Q 003199           21 RLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHG-QIPASIGNVTSLTDLEL   99 (840)
Q Consensus        21 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L   99 (840)
                      .++.++++++ .+|. +  .++|++|+|++|   .+..+++..|.++++|++|+|++|.+.+ ..+..|.++++|++|+|
T Consensus        14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n---~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L--PAHVNYVDLSLN---SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             EEECCSSCCS-SCCC-C--CTTCCEEECCSS---CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCcCCCCcc-cCCC-C--CCccCEEEecCC---ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            4555555555 4444 2  145555555555   4444445555555555555555555542 22345555666666666


Q ss_pred             cCCcccccCchhhhcCCCCCeeecccCccccccCCc--ccCCCCCCCeeeccCCcccccCCcc-ccCCCCCcEEEeeccc
Q 003199          100 TGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPE--ELGNLTELTDLDMSVNHLSGKIPES-ILRLPKLRVLQLYNNS  176 (840)
Q Consensus       100 ~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~  176 (840)
                      ++|++++..|..|..+++|++|+|++|+ +.+..+.  .+..+++|++|+|++|.+++..|.. +..+++|++|++++|+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            6666655555556666666666666555 2222222  2555666666666666665554443 5556666666666666


Q ss_pred             cccccchhhhcC--CCCCEEEccCCcCcccCCcC--------CCCCCCcceeccccccccccCCccccCC---CCchhhh
Q 003199          177 LSGEISSVIANS--TTLTMLSLYDNSLTGEVPQD--------LGQWSPLVVLDLSENKLSGPLPAKVCSR---GKLQYFL  243 (840)
Q Consensus       177 l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~--------l~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~  243 (840)
                      +++..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|+|++|++++..|..+...   .+|+.|+
T Consensus       166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence            655555555544  45666666666665433322        2234556666666666655555544433   4555555


Q ss_pred             cccccccc----------cCCcccccc--cCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCC
Q 003199          244 VLQNMFSG----------VLPDSLARC--KNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNL  311 (840)
Q Consensus       244 l~~n~~~~----------~~~~~~~~l--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  311 (840)
                      +++|.+.+          ..+..+..+  ++|+.|++++|++.+..|..+..+++|+.|+|++|++++..+..|+.+++|
T Consensus       246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL  325 (455)
T ss_dssp             CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence            55553332          222333333  578888888888887778888888888888888888888778888888888


Q ss_pred             ceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCc
Q 003199          312 SELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN  391 (840)
Q Consensus       312 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  391 (840)
                      ++|+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            88888888888777888888888888888888888777888888888888888888888766677788888888888888


Q ss_pred             cccccCC
Q 003199          392 LLTGYIP  398 (840)
Q Consensus       392 ~l~~~~p  398 (840)
                      ++++.+|
T Consensus       406 ~l~~~~~  412 (455)
T 3v47_A          406 PWDCSCP  412 (455)
T ss_dssp             CBCCCTT
T ss_pred             CcccCCC
Confidence            8887777

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=399.61  Aligned_cols=419  Identities=21%  Similarity=0.239  Sum_probs=319.4

Q ss_pred             CccccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc
Q 003199            1 MSFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA   79 (840)
Q Consensus         1 ~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~   79 (840)
                      ++.+.+++ +|. +.  ++|++|+|++|.|++..|..|.++++|++|+|++|   ++..+++..|.++++|++|+|++|.
T Consensus         7 ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            7 RSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN---RIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS---CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             cCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCC---ccCCcChHHhhcccCCCEEecCCCc
Confidence            35677775 554 54  89999999999999888889999999999999999   7778888889999999999999999


Q ss_pred             ccccCCccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCeeecccCccccccCCcccCCCCCC--CeeeccCCcc--c
Q 003199           80 LHGQIPASIGNVTSLTDLELTGNFITG-HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL--TDLDMSVNHL--S  154 (840)
Q Consensus        80 l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L--~~L~L~~n~l--~  154 (840)
                      +++ +|..  .+++|++|+|++|++++ ..|..|+.+++|++|+|++|++ .+   ..+..+++|  ++|+|++|.+  .
T Consensus        81 l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           81 LVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             eee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch---hhccccccceeeEEEeeccccccc
Confidence            984 5555  79999999999999996 3689999999999999999983 32   356777888  9999999999  5


Q ss_pred             ccCCccccC--------------------------CCCCcEEEeeccc-------cccccchhhhcCCCCCEEEccCCcC
Q 003199          155 GKIPESILR--------------------------LPKLRVLQLYNNS-------LSGEISSVIANSTTLTMLSLYDNSL  201 (840)
Q Consensus       155 ~~~~~~~~~--------------------------l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l  201 (840)
                      +..|..+..                          +++|+.|++++|.       +.+.++ .+..+++|++|++++|.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            566655554                          6678888888876       555444 677788888888887777


Q ss_pred             cccCCcCCC---CCCCcceeccccccccccCCccc-----cCCCCchhhhcccccccccCC-cccccc---cCCceEEee
Q 003199          202 TGEVPQDLG---QWSPLVVLDLSENKLSGPLPAKV-----CSRGKLQYFLVLQNMFSGVLP-DSLARC---KNLLRFRVS  269 (840)
Q Consensus       202 ~~~~~~~l~---~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~l~  269 (840)
                      ++..+..+.   ..++|+.|++++|++++.+|..+     ..+.+|+.+++++|.+  .+| ..+..+   .+|+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence            643221111   13578888888888888888877     7788888888888888  344 455544   568888888


Q ss_pred             CceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeee--ccchhhcccCcccEEEcCCCccCC
Q 003199          270 NNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISG--FIPSEIYRAISLVKIDLSDNLLSG  347 (840)
Q Consensus       270 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~  347 (840)
                      +|.+... + .+..+++|++|++++|++++..+..++.+++|++|+|++|++++  .+|..+..+++|+.|+|++|++++
T Consensus       311 ~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~  388 (520)
T 2z7x_B          311 GTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY  388 (520)
T ss_dssp             SSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred             CCccccc-c-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence            8887632 2 12567788888888888887777788888888888888888876  455677888888888888888886


Q ss_pred             CCCC-cccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCCCCcCcCCcc-c
Q 003199          348 PIPS-GIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLS-L  424 (840)
Q Consensus       348 ~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~-~  424 (840)
                      .+|. .+..+++|+.|+|++|++++..|..+.  ++|+.|||++|+++ .+|..+..+ .++.|++++|++++ +|.. +
T Consensus       389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~  464 (520)
T 2z7x_B          389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIF  464 (520)
T ss_dssp             CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTT
T ss_pred             ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHh
Confidence            4554 477788888888888888777766654  67888888888888 677766655 56788888888874 5543 3


Q ss_pred             ccC--CCcccccCCCCCcc
Q 003199          425 IKE--GLVESFSGNPGLCV  441 (840)
Q Consensus       425 ~~~--~~~~~~~~n~~~c~  441 (840)
                      ...  .....+.+||+.|.
T Consensus       465 ~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          465 DRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             TTCTTCCEEECCSSCBCCC
T ss_pred             ccCCcccEEECcCCCCccc
Confidence            222  23456778888774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-41  Score=401.65  Aligned_cols=402  Identities=21%  Similarity=0.213  Sum_probs=257.1

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      +++++|||++|.|++..|.+|.++++|++|+|++|   .|..+++.+|.++++|++|+|++|.+++..++.|.++++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N---~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC---CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC---cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            36888888888888777778888888888888888   677778888888888888888888888777777888888888


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCC----cEEEe
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKL----RVLQL  172 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L  172 (840)
                      |+|++|+|++..+..|+.+++|++|+|++|++.....|..+..+++|++|+|++|++++..+..|..+.++    ..+++
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence            88888888866666788888888888888874444567778888888888888888876666555443322    23334


Q ss_pred             eccccccccch---------------------------------------------------------------------
Q 003199          173 YNNSLSGEISS---------------------------------------------------------------------  183 (840)
Q Consensus       173 ~~N~l~~~~~~---------------------------------------------------------------------  183 (840)
                      +.|.+..+.+.                                                                     
T Consensus       209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~  288 (635)
T 4g8a_A          209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  288 (635)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred             ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence            33333221111                                                                     


Q ss_pred             ----------------------------------hhhcCCCCCEEEccCCcCcccCCcC-------------------CC
Q 003199          184 ----------------------------------VIANSTTLTMLSLYDNSLTGEVPQD-------------------LG  210 (840)
Q Consensus       184 ----------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~-------------------l~  210 (840)
                                                        .+.....|+.|++.+|.+....+..                   ..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  368 (635)
T 4g8a_A          289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV  368 (635)
T ss_dssp             ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred             hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence                                              1122234444444444443222111                   11


Q ss_pred             CCCCcceeccccccccc--cCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCC-ccccCCCcc
Q 003199          211 QWSPLVVLDLSENKLSG--PLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIP-EGILSLPHV  287 (840)
Q Consensus       211 ~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L  287 (840)
                      .+++|+.|++++|.+..  ..+..+..+.+|+++++..|.+.. .+..+..+++|+.+++++|......+ ..+..++++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccc
Confidence            23344444444444421  223333344444444444444432 23345556666666666666553333 345556667


Q ss_pred             cEEeccCCcccccCCcccCCCCCCceeecccceee-eccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccC
Q 003199          288 SIIDLSYNSFSGPIANTVGNARNLSELFMQRNQIS-GFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS  366 (840)
Q Consensus       288 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  366 (840)
                      +.+++++|.+.+..+..+..++.|+.|+|++|.+. +..|..+..+++|+.|+|++|+|++..|..|+++++|+.|+|++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            77777777776666666666777777777776643 34556666667777777777777766666677777777777777


Q ss_pred             CccCCCcchhcccccCCCEEECcCccccccCCchhhcc--CCCeEEccCCCCcCcCCc
Q 003199          367 NKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL--LPNSINFSNNRLSGPIPL  422 (840)
Q Consensus       367 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~--~~~~l~l~~N~l~~~~p~  422 (840)
                      |+|++..|..|..+++|++|||++|+|++..|..+..+  .++.|++++|++.|.|..
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            77776666667777777777777777776666666655  356677777777766653

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=6.7e-42  Score=367.33  Aligned_cols=273  Identities=35%  Similarity=0.548  Sum_probs=220.9

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..++|+..+.||+|+||.||+|..++|+.||||++....          ....+.+.+|+++++.++||||+++++++.+
T Consensus        37 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  106 (321)
T 2qkw_B           37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES----------SQGIEEFETEIETLSFCRHPHLVSLIGFCDE  106 (321)
T ss_dssp             CCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC----------SSHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred             HHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccC----------hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence            446788899999999999999998889999999874432          1234678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCC---CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      ....++||||+++|+|.+++....   ..++|..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+||
T Consensus       107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Df  183 (321)
T 2qkw_B          107 RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDF  183 (321)
T ss_dssp             TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCCEEECCC
T ss_pred             CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCCEEEeec
Confidence            999999999999999999997653   358999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCC-Ccchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGD-NKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~  759 (840)
                      |+++..... ..........||+.|+|||++.+..++.++||||||+++|||++|+.||...... ......|...... 
T Consensus       184 g~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~-  261 (321)
T 2qkw_B          184 GISKKGTEL-DQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHN-  261 (321)
T ss_dssp             TTCEECSSS-SCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHT-
T ss_pred             ccccccccc-cccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccc-
Confidence            999764321 1122234456899999999998889999999999999999999999999764332 2223333322111 


Q ss_pred             ccchhhhcccccCC-CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          760 KEGIMEVLDKKLSG-SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       760 ~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      .......+++.... ...+....+.+++.+||+.||++|||+.|++++|+.+.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l  314 (321)
T 2qkw_B          262 NGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL  314 (321)
T ss_dssp             TTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence            11223334444433 33567788999999999999999999999999998653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.9e-42  Score=394.33  Aligned_cols=404  Identities=21%  Similarity=0.248  Sum_probs=344.3

Q ss_pred             CccccccccCC-CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc
Q 003199            1 MSFMYLTGTLP-DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA   79 (840)
Q Consensus         1 ~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~   79 (840)
                      ++.|.+++..| .|+++++|++|+|++|.|++..|..|.++++|++|+|++|   .+..+|..   .+++|++|+|++|.
T Consensus        28 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N---~l~~lp~~---~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           28 ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN---KLVKISCH---PTVNLKHLDLSFNA  101 (520)
T ss_dssp             CCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS---CCCEEECC---CCCCCSEEECCSSC
T ss_pred             CCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC---ceeecCcc---ccCCccEEeccCCc
Confidence            45678888776 4999999999999999999888999999999999999999   56667765   89999999999999


Q ss_pred             ccc-cCCccccCCCCCcEEEccCCcccccCchhhhcCCCC--CeeecccCccc-cccCCcccC-----------------
Q 003199           80 LHG-QIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNL--RQLELYYNQQL-AGTIPEELG-----------------  138 (840)
Q Consensus        80 l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L--~~L~L~~n~~~-~~~~p~~l~-----------------  138 (840)
                      +++ .+|..|+++++|++|+|++|.+++   ..+..+++|  +.|++++|++. .+..|..+.                 
T Consensus       102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  178 (520)
T 2z7x_B          102 FDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF  178 (520)
T ss_dssp             CSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred             cccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence            987 478999999999999999999985   468888888  99999999731 344444444                 


Q ss_pred             ---------CCCCCCeeeccCCc-------ccccCCccccCCCCCcEEEeeccccccccchhhh---cCCCCCEEEccCC
Q 003199          139 ---------NLTELTDLDMSVNH-------LSGKIPESILRLPKLRVLQLYNNSLSGEISSVIA---NSTTLTMLSLYDN  199 (840)
Q Consensus       139 ---------~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N  199 (840)
                               .+++|+.|++++|.       +.+.++ .+..+++|+.|++++|.+++..+..+.   ..++|++|++++|
T Consensus       179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n  257 (520)
T 2z7x_B          179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV  257 (520)
T ss_dssp             CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred             hhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence                     47788889999887       665555 788999999999999998754332221   2569999999999


Q ss_pred             cCcccCCcCC-----CCCCCcceeccccccccccCC-ccccCC---CCchhhhcccccccccCCcccccccCCceEEeeC
Q 003199          200 SLTGEVPQDL-----GQWSPLVVLDLSENKLSGPLP-AKVCSR---GKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN  270 (840)
Q Consensus       200 ~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  270 (840)
                      ++++.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++
T Consensus       258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~  333 (520)
T 2z7x_B          258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSN  333 (520)
T ss_dssp             EEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred             cccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeEC
Confidence            9998889888     8999999999999999  344 455544   67999999999987543  136889999999999


Q ss_pred             ceeeccCCccccCCCcccEEeccCCcccc--cCCcccCCCCCCceeecccceeeeccch-hhcccCcccEEEcCCCccCC
Q 003199          271 NHLEGSIPEGILSLPHVSIIDLSYNSFSG--PIANTVGNARNLSELFMQRNQISGFIPS-EIYRAISLVKIDLSDNLLSG  347 (840)
Q Consensus       271 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~  347 (840)
                      |++++..|..+..+++|+.|++++|++++  ..|..++.+++|++|+|++|++++.+|. .+..+++|+.|++++|++++
T Consensus       334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence            99998899999999999999999999997  4557799999999999999999985665 47888999999999999998


Q ss_pred             CCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCch-hhcc-CCCeEEccCCCCcCcCCc
Q 003199          348 PIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPES-LCEL-LPNSINFSNNRLSGPIPL  422 (840)
Q Consensus       348 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~-~~~~l~l~~N~l~~~~p~  422 (840)
                      ..|..+.  ++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|+ .+|.. +..+ .++.|++++|+++|.++.
T Consensus       414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            8877665  79999999999998 78887789999999999999999 56665 6665 578999999999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.5e-41  Score=391.72  Aligned_cols=403  Identities=22%  Similarity=0.241  Sum_probs=222.4

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      ...+++++++|+++ .+|..+.  ++|++|+|++|   .+..+++..|..+++|++|+|++|.+++..|+.|+++++|++
T Consensus        31 ~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           31 ELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQN---SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             --CCEEECTTSCCC-SCCTTSC--TTCCEEECCSS---CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCC---CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            33456666666666 4554443  56666666666   455556566666666666666666666666666666666666


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCC--cEEEeec
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKL--RVLQLYN  174 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~  174 (840)
                      |+|++|+|+ .+|..  .+++|++|+|++|++....+|..|.++++|++|+|++|.++..   .+..+++|  +.|++++
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            666666666 34443  5666666666666522223345666666666666666666542   23333444  6666666


Q ss_pred             ccc--ccccchhhhc--------------------------CCCCCEEEccCCc--------------------------
Q 003199          175 NSL--SGEISSVIAN--------------------------STTLTMLSLYDNS--------------------------  200 (840)
Q Consensus       175 N~l--~~~~~~~~~~--------------------------l~~L~~L~L~~N~--------------------------  200 (840)
                      |.+  ++..+..+..                          +++|+.|++++|+                          
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            666  4444433333                          2344444444442                          


Q ss_pred             --Cccc----CCcCCCCCCCcceeccccccccccCCccc-----cCCCCchhhhcccccccccCC-cccccc---cCCce
Q 003199          201 --LTGE----VPQDLGQWSPLVVLDLSENKLSGPLPAKV-----CSRGKLQYFLVLQNMFSGVLP-DSLARC---KNLLR  265 (840)
Q Consensus       201 --l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~  265 (840)
                        +.+.    .+..+ ..++|++|++++|++++.+|..+     ..+..|+.+++..+.+  .+| ..+..+   .+|++
T Consensus       259 ~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          259 IETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred             CcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence              2110    00011 12377888888888887777766     5555555555555554  222 222222   45666


Q ss_pred             EEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeec--cchhhcccCcccEEEcCCC
Q 003199          266 FRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGF--IPSEIYRAISLVKIDLSDN  343 (840)
Q Consensus       266 L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N  343 (840)
                      |++++|.+... + ....+++|++|++++|++++..+..++.+++|++|+|++|++++.  .|..+..+++|+.|+|++|
T Consensus       336 L~l~~n~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          336 LSISDTPFIHM-V-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN  413 (562)
T ss_dssp             EEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred             EEccCCCcccc-c-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence            66666665421 1 114556666666666666665666666666666666666666642  2345566666666666666


Q ss_pred             ccCCCCCC-cccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCCCCcCcCC
Q 003199          344 LLSGPIPS-GIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIP  421 (840)
Q Consensus       344 ~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p  421 (840)
                      ++++.+|. .+..+++|+.|+|++|++++..|..+.  ++|++|+|++|+|+ .+|..+..+ .++.|++++|++++ +|
T Consensus       414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~  489 (562)
T 3a79_B          414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VP  489 (562)
T ss_dssp             CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CC
T ss_pred             cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CC
Confidence            66653333 355666666666666666555444433  46666666666666 455554444 34566666666663 34


Q ss_pred             cc-cccC--CCcccccCCCCCc
Q 003199          422 LS-LIKE--GLVESFSGNPGLC  440 (840)
Q Consensus       422 ~~-~~~~--~~~~~~~~n~~~c  440 (840)
                      .. +...  .....+.+|||.|
T Consensus       490 ~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          490 DGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             TTSTTTCTTCCCEECCSCCBCC
T ss_pred             HHHHhcCCCCCEEEecCCCcCC
Confidence            32 2211  1234556666665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.8e-41  Score=381.42  Aligned_cols=371  Identities=19%  Similarity=0.178  Sum_probs=325.6

Q ss_pred             CEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCeee
Q 003199           44 EVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITG-HIPPEIGLLKNLRQLE  122 (840)
Q Consensus        44 ~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~  122 (840)
                      +.++.+++   .+..+|.    -.++|++|+|++|.+++..|..|+++++|++|+|++|.+.+ ..+..|..+++|++|+
T Consensus        13 ~~~~c~~~---~l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A           13 YNAICINR---GLHQVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             TEEECCSS---CCSSCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             cccCcCCC---CcccCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            45777777   5666665    22789999999999999989999999999999999999974 4467899999999999


Q ss_pred             cccCccccccCCcccCCCCCCCeeeccCCcccccCCcc--ccCCCCCcEEEeeccccccccchh-hhcCCCCCEEEccCC
Q 003199          123 LYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPES--ILRLPKLRVLQLYNNSLSGEISSV-IANSTTLTMLSLYDN  199 (840)
Q Consensus       123 L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N  199 (840)
                      |++|+ +.+..|..|.++++|++|+|++|.+++..+..  |..+++|++|+|++|++++..+.. +.++++|++|+|++|
T Consensus        86 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           86 LDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             CTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             CCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            99998 56677889999999999999999999755444  899999999999999999887765 899999999999999


Q ss_pred             cCcccCCcCCCCC--CCcceeccccccccccCCccc--------cCCCCchhhhcccccccccCCcccccc---cCCceE
Q 003199          200 SLTGEVPQDLGQW--SPLVVLDLSENKLSGPLPAKV--------CSRGKLQYFLVLQNMFSGVLPDSLARC---KNLLRF  266 (840)
Q Consensus       200 ~l~~~~~~~l~~l--~~L~~L~L~~N~l~~~~~~~~--------~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L  266 (840)
                      ++++..+..+..+  .+|+.|++++|.+.+..+..+        ..+++|++|++++|.+.+..+..+...   ++|+.|
T Consensus       165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L  244 (455)
T 3v47_A          165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL  244 (455)
T ss_dssp             CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred             cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence            9998888888776  789999999999997665543        366899999999999999888887765   899999


Q ss_pred             EeeCceeeccC----------CccccC--CCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCc
Q 003199          267 RVSNNHLEGSI----------PEGILS--LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAIS  334 (840)
Q Consensus       267 ~l~~N~l~~~~----------~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  334 (840)
                      ++++|.+.+..          +..+..  .++|+.|++++|++++..+..|+.+++|++|+|++|++++..|..+..+++
T Consensus       245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  324 (455)
T 3v47_A          245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH  324 (455)
T ss_dssp             ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence            99998665321          122222  368999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccC
Q 003199          335 LVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSN  413 (840)
Q Consensus       335 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~  413 (840)
                      |+.|+|++|++++..|..|+++++|+.|+|++|++++..|.+|..+++|++|+|++|++++..+..+..+ .++.|++++
T Consensus       325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccC
Confidence            9999999999998888999999999999999999998889999999999999999999997666666666 578999999


Q ss_pred             CCCcCcCCc
Q 003199          414 NRLSGPIPL  422 (840)
Q Consensus       414 N~l~~~~p~  422 (840)
                      |+++|.+|.
T Consensus       405 N~l~~~~~~  413 (455)
T 3v47_A          405 NPWDCSCPR  413 (455)
T ss_dssp             SCBCCCTTT
T ss_pred             CCcccCCCc
Confidence            999999994

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=7.9e-42  Score=367.81  Aligned_cols=279  Identities=38%  Similarity=0.645  Sum_probs=222.6

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ....++|...+.||+|+||.||+|...+|+.||||++......         .....+.+|+++++.++||||+++++++
T Consensus        26 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---------~~~~~~~~e~~~l~~l~h~~iv~~~~~~   96 (326)
T 3uim_A           26 QVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQ---------GGELQFQTEVEMISMAVHRNLLRLRGFC   96 (326)
T ss_dssp             HTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC--------------CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred             HHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCc---------hHHHHHHHHHHHHHhccCCCccceEEEE
Confidence            3456789999999999999999998888999999998543321         1122588999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCC---CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      ......++||||+++|+|.+++....   ..++|..+..++.|++.||+|||+.+..+|+||||||+||+++.++.+||+
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~  176 (326)
T 3uim_A           97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG  176 (326)
T ss_dssp             CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred             ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence            99999999999999999999998653   348999999999999999999999222299999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCC---CCCCcchhhhhhh
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD---FGDNKNIIYWVSI  755 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~---~~~~~~~~~~~~~  755 (840)
                      |||+++....  ..........||+.|+|||++.+..++.++||||||+++|||++|+.||+..   .........|...
T Consensus       177 Dfg~~~~~~~--~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  254 (326)
T 3uim_A          177 DFGLAKLMDY--KDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG  254 (326)
T ss_dssp             CCSSCEECCS--SSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTT
T ss_pred             cCccccccCc--ccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHH
Confidence            9999987643  2223344556999999999998888999999999999999999999999631   1222333344332


Q ss_pred             hhccccchhhhcccccCC-CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          756 KVDTKEGIMEVLDKKLSG-SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      .... .......+..... ...+....+.+++.+|++.||++|||+.|++++|++...
T Consensus       255 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~  311 (326)
T 3uim_A          255 LLKE-KKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGL  311 (326)
T ss_dssp             TTSS-CCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSC
T ss_pred             Hhhc-hhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcch
Confidence            2222 2233444444433 336677889999999999999999999999999986433

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.6e-42  Score=367.94  Aligned_cols=261  Identities=26%  Similarity=0.342  Sum_probs=207.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+|...+.||+|+||.||+|...    .+..||||++....         .....+.+.+|+.++++++||||+++++++
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~  119 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY---------TERQRRDFLSEASIMGQFDHPNIIRLEGVV  119 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC---------CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC---------CHHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            56788899999999999999764    34569999985332         123456789999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+....++||||+++|+|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg  196 (325)
T 3kul_A          120 TRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFG  196 (325)
T ss_dssp             CGGGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCS
T ss_pred             EeCCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEECCCCCEEECCCC
Confidence            99999999999999999999998766679999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++................+|+.|+|||++.+..++.++||||||+++|||++ |+.||.....  .....         
T Consensus       197 ~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~--~~~~~---------  265 (325)
T 3kul_A          197 LSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN--RDVIS---------  265 (325)
T ss_dssp             SCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCH--HHHHH---------
T ss_pred             cccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCH--HHHHH---------
Confidence            99876543223333344556789999999998899999999999999999999 9999965311  11100         


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                          .+......+........+.+++.+||+.||++|||+.++++.|+.+...
T Consensus       266 ----~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~  314 (325)
T 3kul_A          266 ----SVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS  314 (325)
T ss_dssp             ----HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ----HHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence                0001111111122335677788899999999999999999999986543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.2e-41  Score=364.68  Aligned_cols=250  Identities=23%  Similarity=0.318  Sum_probs=204.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|...+.||+|+||.||+|.. .+|+.||||++.....        .....+.+.+|+++++.++||||+++++++.+.
T Consensus        15 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~   86 (328)
T 3fe3_A           15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQL--------NPTSLQKLFREVRIMKILNHPNIVKLFEVIETE   86 (328)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS--------CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             CCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcC--------CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC
Confidence            4688889999999999999965 6899999999854321        123356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus        87 ~~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~  162 (328)
T 3fe3_A           87 KTLYLIMEYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFGFSN  162 (328)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTCCG
T ss_pred             CEEEEEEECCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCCHHHEEEcCCCCEEEeeccCce
Confidence            99999999999999999997764 68999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCC-ccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKAT-TKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ....    ........||+.|+|||++.+..++ .++||||+||++|||++|+.||.+..     ............   
T Consensus       163 ~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~~~~i~~~~---  230 (328)
T 3fe3_A          163 EFTV----GGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN-----LKELRERVLRGK---  230 (328)
T ss_dssp             GGSS----SCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHCC---
T ss_pred             ecCC----CCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC-----HHHHHHHHHhCC---
Confidence            7643    2234556799999999999887765 89999999999999999999997531     111111100000   


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                           ...+..   ....+.+++.+|++.||.+|||++|++++-
T Consensus       231 -----~~~p~~---~s~~~~~li~~~L~~dP~~R~t~~eil~h~  266 (328)
T 3fe3_A          231 -----YRIPFY---MSTDCENLLKRFLVLNPIKRGTLEQIMKDR  266 (328)
T ss_dssp             -----CCCCTT---SCHHHHHHHHHHCCSSTTTSCCHHHHTTCT
T ss_pred             -----CCCCCC---CCHHHHHHHHHHCCCChhHCcCHHHHhcCH
Confidence                 011111   234566788899999999999999999874

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.2e-41  Score=355.54  Aligned_cols=255  Identities=25%  Similarity=0.343  Sum_probs=207.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|...+++.||||++.....           ..+.+.+|++++++++||||+++++++.+..
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   78 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----------SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA   78 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-----------CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-----------CHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            46788899999999999999988899999999854321           1356889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           79 PICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  155 (269)
T ss_dssp             SEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             ceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHh---CCeecCCcchheEEEcCCCCEEecccccccc
Confidence            9999999999999999998776679999999999999999999999   9999999999999999999999999999986


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....  .........+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||.....  .   ......       .
T Consensus       156 ~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~--~---~~~~~~-------~  221 (269)
T 4hcu_A          156 VLDD--QYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--S---EVVEDI-------S  221 (269)
T ss_dssp             BCCH--HHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--H---HHHHHH-------H
T ss_pred             cccc--ccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH--H---HHHHHH-------h
Confidence            5321  1112234456788999999998899999999999999999999 9999975311  1   000000       0


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      .......+..   ....+.+++.+|++.||++|||+.+++++|+++.
T Consensus       222 ~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~  265 (269)
T 4hcu_A          222 TGFRLYKPRL---ASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA  265 (269)
T ss_dssp             TTCCCCCCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cCccCCCCCc---CCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHH
Confidence            0001111111   2345677888999999999999999999998764

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=8.9e-42  Score=372.95  Aligned_cols=260  Identities=27%  Similarity=0.355  Sum_probs=197.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+|...+.||+|+||.||+|...    ++..||||++....         .....+.+.+|+.++++++||||+++++++
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~niv~~~~~~  115 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY---------TEKQRRDFLGEASIMGQFDHPNIIRLEGVV  115 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC---------CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc---------CHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            46888899999999999999764    57789999984322         123456799999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+....++||||+++|+|.+++......+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus       116 ~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg  192 (373)
T 2qol_A          116 TKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFG  192 (373)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             eeCCceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcCc
Confidence            99999999999999999999998876679999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++................+++.|+|||++.+..++.++||||||+++|||++ |+.||....  .....   ..     
T Consensus       193 ~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~--~~~~~---~~-----  262 (373)
T 2qol_A          193 LGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMS--NQDVI---KA-----  262 (373)
T ss_dssp             ---------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC--HHHHH---HH-----
T ss_pred             cccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC--HHHHH---HH-----
Confidence            99876543222222233446788999999999999999999999999999998 999996531  11110   00     


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                           +......+........+.+++.+||+.||++||++.++++.|+++..
T Consensus       263 -----i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~  309 (373)
T 2qol_A          263 -----VDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIR  309 (373)
T ss_dssp             -----HHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -----HHcCCCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHh
Confidence                 00000111112234567788889999999999999999999987643

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=2.2e-41  Score=369.59  Aligned_cols=257  Identities=25%  Similarity=0.347  Sum_probs=206.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe--------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL--------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~  596 (840)
                      ++|...+.||+|+||.||+|..        .++..||||++....         .....+.+.+|+++++++ +||||++
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~~hpnIv~  151 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---------TEKDLSDLVSEMEMMKMIGKHKNIIN  151 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC---------BHHHHHHHHHHHHHHHHSCCCTTBCC
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc---------CHHHHHHHHHHHHHHHHhcCCCCEee
Confidence            5678889999999999999965        245679999985332         123456789999999999 8999999


Q ss_pred             eeeEEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          597 LYCYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      +++++.+....++||||+++|+|.+++....               ..+++.++..++.||+.||+|||+   ++|+|||
T Consensus       152 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrD  228 (370)
T 2psq_A          152 LLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRD  228 (370)
T ss_dssp             EEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             EEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeccc
Confidence            9999999999999999999999999997643               247899999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+|||++.++.+||+|||+++...... .........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.
T Consensus       229 lkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~  307 (370)
T 2psq_A          229 LAARNVLVTENNVMKIADFGLARDINNID-YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP  307 (370)
T ss_dssp             CCGGGEEECTTCCEEECCCSSCEETTCCC-TTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             cchhhEEECCCCCEEEccccCCcccCccc-ceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999998664321 1122334567889999999999999999999999999999999 999997


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      +..  .......             +...............+.+++.+||+.||++||++.|++++|+++
T Consensus       308 ~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i  362 (370)
T 2psq_A          308 GIP--VEELFKL-------------LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  362 (370)
T ss_dssp             TCC--GGGHHHH-------------HHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCC--HHHHHHH-------------HhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            531  1111100             000001111112334577788899999999999999999999875

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=1.8e-41  Score=354.18  Aligned_cols=257  Identities=23%  Similarity=0.335  Sum_probs=208.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|..+++..||||++.....           ..+.+.+|++++++++||||+++++++.+..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   76 (268)
T 3sxs_A            8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-----------SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEY   76 (268)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-----------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-----------cHHHHHHHHHHHHhCCCCCEeeEEEEEccCC
Confidence            56788899999999999999999888999999854321           1356889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++......+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~  153 (268)
T 3sxs_A           77 PIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRY  153 (268)
T ss_dssp             SEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEEE
T ss_pred             ceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCcccee
Confidence            9999999999999999998765569999999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ...  ..........+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.....  ...  .....        
T Consensus       154 ~~~--~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~--~~~~~--------  219 (268)
T 3sxs_A          154 VLD--DQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN--SEV--VLKVS--------  219 (268)
T ss_dssp             CCT--TCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH--HHH--HHHHH--------
T ss_pred             cch--hhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh--HHH--HHHHH--------
Confidence            543  12222334456778999999988889999999999999999999 9999975311  000  00000        


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      .......+..   ....+.+++.+|++.||++|||+.|++++|+.+...
T Consensus       220 ~~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          220 QGHRLYRPHL---ASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             TTCCCCCCTT---SCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             cCCCCCCCCc---ChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            0000011111   224567788899999999999999999999988653

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.8e-41  Score=358.83  Aligned_cols=261  Identities=25%  Similarity=0.392  Sum_probs=209.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||+||+|.. .+++.||+|++....          ....+.+.+|++++++++||||+++++++.+.
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~----------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   79 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFD----------EETQRTFLKEVKVMRCLEHPNVLKFIGVLYKD   79 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCC----------HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCC----------HHHHHHHHHHHHHHHhCCCcCcccEEEEEecC
Confidence            4677889999999999999966 478999999884321          34457789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++......+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  156 (310)
T 3s95_A           80 KRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLAR  156 (310)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEECTTSCEEECCCTTCE
T ss_pred             CeeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCcCeEEECCCCCEEEeecccce
Confidence            99999999999999999998866689999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCC-----------cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          685 VLQARGGKD-----------STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       685 ~~~~~~~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      .........           .......||+.|+|||++.+..++.++||||||+++|||++|..|+............. 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~-  235 (310)
T 3s95_A          157 LMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLN-  235 (310)
T ss_dssp             ECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBC-
T ss_pred             ecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhh-
Confidence            764321111           11124679999999999999999999999999999999999999987532221111100 


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                               .....+...+...   ...+.+++.+||+.||++|||+.++++.|+++..
T Consensus       236 ---------~~~~~~~~~~~~~---~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~  282 (310)
T 3s95_A          236 ---------VRGFLDRYCPPNC---PPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRM  282 (310)
T ss_dssp             ---------HHHHHHHTCCTTC---CTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ---------hhccccccCCCCC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence                     1111111111111   2346678889999999999999999999987653

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=2.2e-41  Score=360.41  Aligned_cols=259  Identities=32%  Similarity=0.450  Sum_probs=199.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .+|+..+.||+|+||+||+|... |+.||||++.....        .....+.+.+|++++++++||||+++++++.+..
T Consensus        37 ~~y~i~~~lG~G~~g~V~~~~~~-~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~  107 (309)
T 3p86_A           37 CDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDF--------HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP  107 (309)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEET-TEEEEEEEECCCCC--------SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT
T ss_pred             hHceeeeEeecCCCeEEEEEEEC-CCcEEEEEecCCCC--------CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC
Confidence            56888899999999999999774 89999999854321        1233567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCCEEEcCCCCCeeeccc
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSP--IIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ..++||||+++|+|.+++....  ..+++..+..++.|++.||+|||+   .+  |+||||||+||+++.++.+||+|||
T Consensus       108 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~~~ivH~Dikp~NIll~~~~~~kL~Dfg  184 (309)
T 3p86_A          108 NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN---RNPPIVHRNLKSPNLLVDKKYTVKVCDFG  184 (309)
T ss_dssp             CCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHT---SSSCCCCTTCCGGGEEECTTCCEEECCCC
T ss_pred             ceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCCEECCCCChhhEEEeCCCcEEECCCC
Confidence            9999999999999999998753  238999999999999999999999   88  9999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +++....   .........||+.|+|||++.+..++.++||||||+++|||++|+.||.....  ........  ..   
T Consensus       185 ~a~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~--~~~~~~~~--~~---  254 (309)
T 3p86_A          185 LSRLKAS---TFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNP--AQVVAAVG--FK---  254 (309)
T ss_dssp             --------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCH--HHHHHHHH--HS---
T ss_pred             CCccccc---cccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHH--hc---
Confidence            9976432   12223456799999999999999999999999999999999999999975311  11110000  00   


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                          ......+..   ....+.+++.+||+.||++|||+.++++.|+.+...
T Consensus       255 ----~~~~~~~~~---~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          255 ----CKRLEIPRN---LNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             ----CCCCCCCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             ----CCCCCCCcc---CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence                001111222   234567788899999999999999999999877554

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2e-41  Score=358.92  Aligned_cols=252  Identities=25%  Similarity=0.351  Sum_probs=204.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||+|.. .+|+.||||++.....          ...+.+.+|+.+++.++||||+++++++..
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   88 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ----------PKKELIINEILVMRENKNPNIVNYLDSYLV   88 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGC----------SCHHHHHHHHHHHHHCCCTTBCCEEEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccc----------cHHHHHHHHHHHHhcCCCCCCCeEeEEEEE
Confidence            35788899999999999999964 5799999999854321          123568899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .+..++||||+++|+|.+++...  .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||++
T Consensus        89 ~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~  163 (297)
T 3fxz_A           89 GDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFC  163 (297)
T ss_dssp             TTEEEEEEECCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             CCEEEEEEECCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCc
Confidence            99999999999999999999875  58999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....   .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....    ............   
T Consensus       164 ~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~~~~~~~~---  233 (297)
T 3fxz_A          164 AQITP---EQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP----LRALYLIATNGT---  233 (297)
T ss_dssp             EECCS---TTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHHCS---
T ss_pred             eecCC---cccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHhCCC---
Confidence            76543   22233456799999999999999999999999999999999999999975311    100000000000   


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                           .. ..........+.+++.+||+.||++|||+.|++++-
T Consensus       234 -----~~-~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~  271 (297)
T 3fxz_A          234 -----PE-LQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQ  271 (297)
T ss_dssp             -----CC-CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCG
T ss_pred             -----CC-CCCccccCHHHHHHHHHHccCChhHCcCHHHHhhCh
Confidence                 00 001122334567788899999999999999999863

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=2.3e-40  Score=353.17  Aligned_cols=280  Identities=35%  Similarity=0.544  Sum_probs=222.8

Q ss_pred             hHHHHHHhcCcc------CeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCC
Q 003199          520 DQREILEAMTEK------NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN  593 (840)
Q Consensus       520 ~~~~~~~~~~~~------~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n  593 (840)
                      +...++..|...      +.||+|+||.||+|.. +++.||||++......      ......+.+.+|+.++++++|||
T Consensus        19 ~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~------~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           19 ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDI------TTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             HHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTS------CTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCc------chHHHHHHHHHHHHHHHhcCCCC
Confidence            344555666655      8999999999999987 4899999998543211      11234567899999999999999


Q ss_pred             cceeeeEEecCccceEEEeecCCCChHHHhhcC--CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC
Q 003199          594 IVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKG--LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV  671 (840)
Q Consensus       594 iv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~  671 (840)
                      |+++++++.+....++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+   ++|+||||||+||+++.
T Consensus        92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nili~~  168 (307)
T 2nru_A           92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDE  168 (307)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECT
T ss_pred             eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCCCHHHEEEcC
Confidence            999999999999999999999999999998743  3468999999999999999999999   99999999999999999


Q ss_pred             CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhh
Q 003199          672 NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       672 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~  751 (840)
                      ++.+||+|||+++..... ..........||+.|+|||.+.+ .++.++||||||+++|||++|+.||..... ......
T Consensus       169 ~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~~~  245 (307)
T 2nru_A          169 AFTAKISDFGLARASEKF-AQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLD  245 (307)
T ss_dssp             TCCEEECCCTTCEECCSC-SSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBS-SSBTTH
T ss_pred             CCcEEEeecccccccccc-cccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcc-hHHHHH
Confidence            999999999999765331 11222334579999999998765 588999999999999999999999976432 222222


Q ss_pred             hhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      +..........+...+++............+.+++.+||+.||.+|||+.+++++|+++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          246 IKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             HHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             HHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            2222222233344556666666667778889999999999999999999999999998753

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=2.3e-41  Score=362.89  Aligned_cols=268  Identities=27%  Similarity=0.321  Sum_probs=204.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .+|+..+.||+|+||+||+|... ++.||||++....           .....+.+|+.++++++||||+++++++....
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-----------~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   91 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-----------KQSWQNEYEVYSLPGMKHENILQFIGAEKRGT   91 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-----------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC
T ss_pred             hhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-----------hHHHHHHHHHHHHhcCCCCCchhhcceeccCC
Confidence            46788899999999999999876 8999999984321           22344566999999999999999999997754


Q ss_pred             c----ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCC----------CeEecCCCCCCEEEcC
Q 003199          606 C----NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLS----------PIIHRDIKSTNILLDV  671 (840)
Q Consensus       606 ~----~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~----------~ivH~Dlk~~Nill~~  671 (840)
                      .    .++||||+++|+|.+++...  .++|..+..++.|++.||+|||+   .          +|+||||||+||+++.
T Consensus        92 ~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~LH~---~~~~l~~~~~~~ivH~Dlkp~Nill~~  166 (322)
T 3soc_A           92 SVDVDLWLITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHE---DIPGLKDGHKPAISHRDIKSKNVLLKN  166 (322)
T ss_dssp             SSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHTC---CEEEETTEEECEEECSCCSGGGEEECT
T ss_pred             CCCceEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHh---hccccccccCCCEEeCCCChHhEEECC
Confidence            3    59999999999999999875  58999999999999999999998   7          9999999999999999


Q ss_pred             CCCCeeecccchhhhhccCCCCcceecccccccccCcccccc-----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCC
Q 003199          672 NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDN  746 (840)
Q Consensus       672 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~  746 (840)
                      ++.+||+|||+++...... .........||+.|+|||++.+     ..++.++|||||||++|||++|+.||.......
T Consensus       167 ~~~~kL~DFg~a~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~  245 (322)
T 3soc_A          167 NLTACIADFGLALKFEAGK-SAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEY  245 (322)
T ss_dssp             TCCEEECCCTTCEEECTTS-CCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCC
T ss_pred             CCeEEEccCCccccccccc-CccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchh
Confidence            9999999999997764321 1222334679999999999876     355678999999999999999999997643322


Q ss_pred             cchhhhhhhhhccccchhh-hccccc----CCCc--HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          747 KNIIYWVSIKVDTKEGIME-VLDKKL----SGSF--RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~--~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ................... ......    ...+  ......+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~  317 (322)
T 3soc_A          246 MLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQ  317 (322)
T ss_dssp             CCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ccchhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            1111000000000000111 111111    1111  234566889999999999999999999999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.6e-40  Score=385.01  Aligned_cols=400  Identities=19%  Similarity=0.237  Sum_probs=324.5

Q ss_pred             ccccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccc
Q 003199            2 SFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCAL   80 (840)
Q Consensus         2 ~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l   80 (840)
                      +.+.+++ +|. +.  ++|++|+|++|.|++..|..|.++++|++|+|++|   .+..+++..|.++++|++|+|++|.+
T Consensus        39 s~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~Ls~N~l  112 (562)
T 3a79_B           39 SNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN---RIRSLDFHVFLFNQDLEYLDVSHNRL  112 (562)
T ss_dssp             TTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC---CCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC---CCCcCCHHHhCCCCCCCEEECCCCcC
Confidence            4456675 454 43  89999999999999888889999999999999999   77888888999999999999999999


Q ss_pred             cccCCccccCCCCCcEEEccCCccccc-CchhhhcCCCCCeeecccCccccccCCcccCCCCCC--CeeeccCCcc--cc
Q 003199           81 HGQIPASIGNVTSLTDLELTGNFITGH-IPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL--TDLDMSVNHL--SG  155 (840)
Q Consensus        81 ~~~~~~~~~~l~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L--~~L~L~~n~l--~~  155 (840)
                      + .+|..  .+++|++|+|++|++++. .|..|.++++|++|+|++|++ ..   ..+..+++|  ++|+|++|.+  ++
T Consensus       113 ~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~L~~n~l~~~~  185 (562)
T 3a79_B          113 Q-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ---LDLLPVAHLHLSCILLDLVSYHIKG  185 (562)
T ss_dssp             C-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT---TTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred             C-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-cc---CchhhhhhceeeEEEeecccccccc
Confidence            8 45655  799999999999999963 468999999999999999983 32   245555666  9999999999  66


Q ss_pred             cCCccccC--------------------------CCCCcEEEeeccc----------------------------cccc-
Q 003199          156 KIPESILR--------------------------LPKLRVLQLYNNS----------------------------LSGE-  180 (840)
Q Consensus       156 ~~~~~~~~--------------------------l~~L~~L~L~~N~----------------------------l~~~-  180 (840)
                      ..|..+..                          +++|+.|++++|+                            +.+. 
T Consensus       186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~  265 (562)
T 3a79_B          186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC  265 (562)
T ss_dssp             SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred             cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence            66665554                          4466677777663                            1110 


Q ss_pred             ---cchhhhcCCCCCEEEccCCcCcccCCcCC-----CCCCCcceeccccccccccCC-ccccC---CCCchhhhccccc
Q 003199          181 ---ISSVIANSTTLTMLSLYDNSLTGEVPQDL-----GQWSPLVVLDLSENKLSGPLP-AKVCS---RGKLQYFLVLQNM  248 (840)
Q Consensus       181 ---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~-~~~~~---l~~L~~L~l~~n~  248 (840)
                         .+. ....++|++|++++|++++.+|..+     ..++.|+.++++.|.+  .+| ..+..   ..+|+.|++++|.
T Consensus       266 ~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~  342 (562)
T 3a79_B          266 SVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP  342 (562)
T ss_dssp             HHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC
Confidence               011 1123489999999999998888877     7788888888888877  334 23322   3679999999998


Q ss_pred             ccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccC--CcccCCCCCCceeecccceeeeccc
Q 003199          249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI--ANTVGNARNLSELFMQRNQISGFIP  326 (840)
Q Consensus       249 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p  326 (840)
                      +....  ....+++|++|++++|++++..|..+..+++|+.|++++|++++..  +..++.+++|++|+|++|++++.+|
T Consensus       343 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  420 (562)
T 3a79_B          343 FIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY  420 (562)
T ss_dssp             CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred             ccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence            86432  1267899999999999999889999999999999999999999743  4678999999999999999998455


Q ss_pred             h-hhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCch-hhcc
Q 003199          327 S-EIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPES-LCEL  404 (840)
Q Consensus       327 ~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~  404 (840)
                      . .+..+++|+.|+|++|++++.+|..+.  ++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|+ .+|.. +..+
T Consensus       421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l  496 (562)
T 3a79_B          421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL  496 (562)
T ss_dssp             SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred             hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence            4 577889999999999999987777664  78999999999998 67776779999999999999999 56765 6665


Q ss_pred             -CCCeEEccCCCCcCcCCcc
Q 003199          405 -LPNSINFSNNRLSGPIPLS  423 (840)
Q Consensus       405 -~~~~l~l~~N~l~~~~p~~  423 (840)
                       .++.+++++|++.|.+|..
T Consensus       497 ~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          497 TSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             TTCCCEECCSCCBCCCHHHH
T ss_pred             CCCCEEEecCCCcCCCcchH
Confidence             5688999999999998853

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.4e-39  Score=384.04  Aligned_cols=415  Identities=20%  Similarity=0.187  Sum_probs=320.9

Q ss_pred             CCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEE
Q 003199           19 LRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLE   98 (840)
Q Consensus        19 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   98 (840)
                      -++.+-++.+++ .+|..+.  +++++|+|++|   .|+.+++..|.++++|++|+|++|.|+++.|++|.++++|++|+
T Consensus        33 ~~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N---~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~  106 (635)
T 4g8a_A           33 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFN---PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI  106 (635)
T ss_dssp             TTEEECTTSCCS-SCCSSSC--TTCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCCcC-ccCCCCC--cCCCEEEeeCC---CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEE
Confidence            356788888898 7887553  48999999999   78889999999999999999999999998899999999999999


Q ss_pred             ccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCccccc-CCccccCCCCCcEEEeecccc
Q 003199           99 LTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGK-IPESILRLPKLRVLQLYNNSL  177 (840)
Q Consensus        99 L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l  177 (840)
                      |++|+|++..+..|.++++|++|+|++|+ +.+..+..|+++++|++|+|++|.+++. .|..+..+++|++|+|++|+|
T Consensus       107 Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          107 LTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             CTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            99999998778899999999999999998 4555556799999999999999999864 578889999999999999999


Q ss_pred             ccccchhhhcCCCCC----EEEccCCcCcccCCcCCCCC-----------------------------------------
Q 003199          178 SGEISSVIANSTTLT----MLSLYDNSLTGEVPQDLGQW-----------------------------------------  212 (840)
Q Consensus       178 ~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~l~~l-----------------------------------------  212 (840)
                      ++..+..|..+.+++    .++++.|.+..+.+..+...                                         
T Consensus       186 ~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~  265 (635)
T 4g8a_A          186 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG  265 (635)
T ss_dssp             CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             cccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence            988888887665443    67777777764333222211                                         


Q ss_pred             --------------------------------------------------------------CCcceeccccccccccCC
Q 003199          213 --------------------------------------------------------------SPLVVLDLSENKLSGPLP  230 (840)
Q Consensus       213 --------------------------------------------------------------~~L~~L~L~~N~l~~~~~  230 (840)
                                                                                    ..|+.|++.+|.+....+
T Consensus       266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  345 (635)
T 4g8a_A          266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT  345 (635)
T ss_dssp             CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC
T ss_pred             ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc
Confidence                                                                          122222333332221111


Q ss_pred             cc-------------------ccCCCCchhhhcccccccc--cCCcccccccCCceEEeeCceeeccCCccccCCCcccE
Q 003199          231 AK-------------------VCSRGKLQYFLVLQNMFSG--VLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSI  289 (840)
Q Consensus       231 ~~-------------------~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  289 (840)
                      ..                   ...+++|+.++++.|.+..  ..+..+..+.+|+.+++..|.+. ..+..+..+++|+.
T Consensus       346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~  424 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEH  424 (635)
T ss_dssp             CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCE
T ss_pred             ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccc
Confidence            10                   1122333344444443321  12223333444445555555444 33455667788888


Q ss_pred             EeccCCcccccCC-cccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCcc-CCCCCCcccCccccchhcccCC
Q 003199          290 IDLSYNSFSGPIA-NTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLL-SGPIPSGIGNLKKLNLLMLQSN  367 (840)
Q Consensus       290 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N  367 (840)
                      ++++.|......+ ..|..+++++.++++.|.+.+..+..+..++.|+.|+|++|.+ .+..|..|..+++|+.|+|++|
T Consensus       425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N  504 (635)
T 4g8a_A          425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  504 (635)
T ss_dssp             EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence            8888777665443 5678899999999999999999999999999999999999985 4468889999999999999999


Q ss_pred             ccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCCCCcCcCCcccccC---CCcccccCCCCCcc
Q 003199          368 KLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKE---GLVESFSGNPGLCV  441 (840)
Q Consensus       368 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~~~~---~~~~~~~~n~~~c~  441 (840)
                      +|++.+|.+|.++++|++|+|++|+|++..|..+..+ .++.|++++|++++..|..+...   .....+.+|||.|.
T Consensus       505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999999999999999999999998888888877 67999999999999999876543   34578999999994

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.7e-40  Score=351.25  Aligned_cols=270  Identities=27%  Similarity=0.349  Sum_probs=208.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|.. .+++.||+|++......       .....+.+.+|+.++++++||||+++++++.+.
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~   83 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPRE-------KEETLKRFEREVHNSSQLSHQNIVSMIDVDEED   83 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSC-------CHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECS
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccc-------cHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeC
Confidence            4688889999999999999964 47899999998543321       234457789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus        84 ~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~  159 (294)
T 4eqm_A           84 DCYYLVMEYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAK  159 (294)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCSSST
T ss_pred             CeEEEEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEEeCCCcc
Confidence            99999999999999999998764 68999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....  .........||+.|+|||.+.+..++.++||||+|+++|||++|+.||.....    .............   
T Consensus       160 ~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~----~~~~~~~~~~~~~---  230 (294)
T 4eqm_A          160 ALSET--SLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETA----VSIAIKHIQDSVP---  230 (294)
T ss_dssp             TC---------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCH----HHHHHHHHSSCCC---
T ss_pred             ccccc--cccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh----HHHHHHHhhccCC---
Confidence            76431  22233446799999999999999999999999999999999999999975311    0000000000000   


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHhhhcCCCCCCCCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-TMNEVVQLLAEADPCRFESCK  819 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-s~~evl~~L~~~~~~~~~~~~  819 (840)
                       ........   +....+.+++.+|++.||++|| +++++.+.|+.+........+
T Consensus       231 -~~~~~~~~---~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~~~~~  282 (294)
T 4eqm_A          231 -NVTTDVRK---DIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENRANED  282 (294)
T ss_dssp             -CHHHHSCT---TSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSSTTCC
T ss_pred             -Ccchhccc---CCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhccCCcc
Confidence             00001111   1234567788899999999998 999999999887655544433

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=4.4e-41  Score=354.25  Aligned_cols=254  Identities=22%  Similarity=0.307  Sum_probs=204.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|...++..||||++.....           ..+.+.+|++++++++||||+++++++.+..
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   92 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----------SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR   92 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-----------CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-----------CHHHHHHHHHHHhcCCCCCEeeEEEEEecCC
Confidence            56788899999999999999999888999999854321           1356889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++......+++.++..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.
T Consensus        93 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~  169 (283)
T 3gen_A           93 PIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRY  169 (283)
T ss_dssp             SEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTSCEEECSTTGGGG
T ss_pred             CeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccceEEEcCCCCEEEcccccccc
Confidence            9999999999999999998755579999999999999999999999   9999999999999999999999999999986


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....  .........+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||.....  ...   ...       +.
T Consensus       170 ~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~--~~~---~~~-------~~  235 (283)
T 3gen_A          170 VLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN--SET---AEH-------IA  235 (283)
T ss_dssp             BCCH--HHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH--HHH---HHH-------HH
T ss_pred             cccc--ccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh--hHH---HHH-------Hh
Confidence            5321  1112233456788999999998899999999999999999998 9999975311  000   000       00


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ...........   ...+.+++.+||+.||++|||+++++++|.++
T Consensus       236 ~~~~~~~~~~~---~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~  278 (283)
T 3gen_A          236 QGLRLYRPHLA---SEKVYTIMYSCWHEKADERPTFKILLSNILDV  278 (283)
T ss_dssp             TTCCCCCCTTC---CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             cccCCCCCCcC---CHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence            00111111111   34567788899999999999999999999865

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=1.6e-41  Score=372.25  Aligned_cols=258  Identities=23%  Similarity=0.299  Sum_probs=205.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|... +++.||||++....         .....+.+.+|++++++++||||+++++++...
T Consensus       114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  184 (377)
T 3cbl_A          114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL---------PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK  184 (377)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS---------CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred             HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC---------CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecC
Confidence            46778899999999999999776 78999999985321         123345688999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus       185 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~  261 (377)
T 3cbl_A          185 QPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFGMSR  261 (377)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             CCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcCCcccCHHHEEEcCCCcEEECcCCCce
Confidence            99999999999999999998765578999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ..... ..........+++.|+|||.+.+..++.++|||||||++|||++ |+.||.....  .......    ..    
T Consensus       262 ~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~--~~~~~~~----~~----  330 (377)
T 3cbl_A          262 EEADG-VYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN--QQTREFV----EK----  330 (377)
T ss_dssp             ECTTS-EEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH--HHHHHHH----HT----
T ss_pred             ecCCC-ceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHH----Hc----
Confidence            54221 00111122345778999999988899999999999999999998 9999975311  1110000    00    


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                        ......+.   .....+.+++.+||+.||++|||+.++++.|+++.
T Consensus       331 --~~~~~~~~---~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~  373 (377)
T 3cbl_A          331 --GGRLPCPE---LCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR  373 (377)
T ss_dssp             --TCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --CCCCCCCC---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence              00001111   12345677888999999999999999999998764

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=8.7e-41  Score=356.45  Aligned_cols=271  Identities=24%  Similarity=0.342  Sum_probs=205.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .++|+..+.||+|+||+||+|...+|+.||||++.....        .....+.+.+|++++++++||||+++++++.+.
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   91 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAE--------DEGIPSTAIREISLLKELHHPNIVSLIDVIHSE   91 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC--------------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCS
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccc--------cchhhHHHHHHHHHHHHcCCCCEeeeeeEEccC
Confidence            467888999999999999999888899999999854321        122346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||++ |+|.+.+......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        92 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  167 (311)
T 3niz_A           92 RCLTLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLAR  167 (311)
T ss_dssp             SCEEEEEECCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CEEEEEEcCCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchHhEEECCCCCEEEccCcCce
Confidence            99999999997 58888888776679999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh-ccccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV-DTKEG  762 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~~  762 (840)
                      ....   .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||........ ......... .....
T Consensus       168 ~~~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~~~~~~~  243 (311)
T 3niz_A          168 AFGI---PVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQ-LPKIFSILGTPNPRE  243 (311)
T ss_dssp             ETTS---CCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTH-HHHHHHHHCCCCTTT
T ss_pred             ecCC---CcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHHCCCChHH
Confidence            7632   2223344578999999999876 5689999999999999999999999976432221 111111000 00000


Q ss_pred             hhhh------cc---cccCCC-----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcC
Q 003199          763 IMEV------LD---KKLSGS-----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEAD  811 (840)
Q Consensus       763 ~~~~------~~---~~~~~~-----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~  811 (840)
                      ....      ..   ......     ......++.+++.+|++.||++|||++|++++  +++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  308 (311)
T 3niz_A          244 WPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDLD  308 (311)
T ss_dssp             SGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTSC
T ss_pred             hhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcccccCC
Confidence            0000      00   000000     01123467788899999999999999999985  44443

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.6e-41  Score=359.75  Aligned_cols=270  Identities=26%  Similarity=0.325  Sum_probs=203.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|+..+.||+|+||+||+|.+     .+++.||||++....          ....+.+.+|++++++++||||++++++
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l~h~~iv~~~~~   79 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST----------EEHLRDFEREIEILKSLQHDNIVKYKGV   79 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC----------HHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC----------HHHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            5678889999999999999974     368999999985322          2335678999999999999999999999


Q ss_pred             Eec--CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          601 FSS--LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       601 ~~~--~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      +..  ....++||||+++|+|.+++......+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+
T Consensus        80 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~  156 (295)
T 3ugc_A           80 CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIG  156 (295)
T ss_dssp             ECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEEC
T ss_pred             EecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEc
Confidence            855  345799999999999999998876569999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++................++..|+|||.+.+..++.++||||||+++|||++|..|+......   ..........
T Consensus       157 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~---~~~~~~~~~~  233 (295)
T 3ugc_A          157 DFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGNDKQ  233 (295)
T ss_dssp             CCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH---HHHHHCTTCC
T ss_pred             cCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH---HHhhhcCccc
Confidence            9999987654322223334456778899999999999999999999999999999999998642100   0000000000


Q ss_pred             ----cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          759 ----TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       759 ----~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                          ..............+........+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~  290 (295)
T 3ugc_A          234 GQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR  290 (295)
T ss_dssp             THHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence                00000001111111112233456778888999999999999999999998763

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.3e-41  Score=359.32  Aligned_cols=251  Identities=21%  Similarity=0.316  Sum_probs=205.6

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|...+.||+|+||.||+|... +|+.||+|.+....           .....+.+|+.+++.++||||+++++++.+
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-----------~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~   72 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-----------TDQVLVKKEISILNIARHRNILHLHESFES   72 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-----------HHHHHHHHHHHHHHHSCCTTBCCEEEEEEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-----------ccHHHHHHHHHHHHhCCCCCCCeEeEEEec
Confidence            357888999999999999999654 68999999984321           224568899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC--CCCCeeeccc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV--NYQPKVADFG  681 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~--~~~~kl~Dfg  681 (840)
                      ....++||||+++|+|.+++......+++.++..++.|++.||+|||+   ++|+||||||+||+++.  ++.+||+|||
T Consensus        73 ~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~givH~Dlkp~NIl~~~~~~~~~kl~Dfg  149 (321)
T 1tki_A           73 MEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFG  149 (321)
T ss_dssp             TTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCT
T ss_pred             CCEEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEccCCCCCEEEEECC
Confidence            999999999999999999998766679999999999999999999999   99999999999999987  7899999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +++....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  .   ....       
T Consensus       150 ~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~---~~~~-------  213 (321)
T 1tki_A          150 QARQLKP----GDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN--Q---QIIE-------  213 (321)
T ss_dssp             TCEECCT----TCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH--H---HHHH-------
T ss_pred             CCeECCC----CCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH--H---HHHH-------
Confidence            9987632    2334556799999999999888899999999999999999999999975311  1   1110       


Q ss_pred             chhhhcccccCC---CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          762 GIMEVLDKKLSG---SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       762 ~~~~~~~~~~~~---~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                         .+.......   .+.....++.+++.+|+..||++|||+.|++++-.
T Consensus       214 ---~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~  260 (321)
T 1tki_A          214 ---NIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPW  260 (321)
T ss_dssp             ---HHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred             ---HHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcChh
Confidence               011111100   01122356778888999999999999999999754

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.1e-40  Score=358.06  Aligned_cols=251  Identities=24%  Similarity=0.298  Sum_probs=203.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|..+ +|+.||||++......       .......+.+|+.+++.++||||+++++++.+.
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~   77 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVII-------AKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH   77 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH-------HTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhh-------hhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeC
Confidence            56888899999999999999665 7999999998543210       112345688999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus        78 ~~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~  153 (337)
T 1o6l_A           78 DRLCFVMEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCK  153 (337)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             CEEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCCHHHEEECCCCCEEEeeccchh
Confidence            99999999999999999998754 68999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....   .........||+.|+|||++.+..++.++|||||||++|||++|+.||....   .  ..........     
T Consensus       154 ~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~---~--~~~~~~i~~~-----  220 (337)
T 1o6l_A          154 EGIS---DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD---H--ERLFELILME-----  220 (337)
T ss_dssp             CSCC---TTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS---H--HHHHHHHHHC-----
T ss_pred             hccc---CCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC---H--HHHHHHHHcC-----
Confidence            5422   1223445679999999999999999999999999999999999999997531   1  1111110000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                         ...++..+   ...+.+++.+|++.||++||     ++.|+++|
T Consensus       221 ---~~~~p~~~---s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          221 ---EIRFPRTL---SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             ---CCCCCTTS---CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             ---CCCCCCCC---CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence               01122222   34566778899999999999     89999887

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=3.3e-40  Score=353.82  Aligned_cols=275  Identities=23%  Similarity=0.272  Sum_probs=208.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||+||+|... +|+.||||++.....         ....+.+.+|++++++++||||+++++++...
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   79 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF---------LRPVDVQMREFEVLKKLNHKNIVKLFAIEEET   79 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG---------GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc---------cchHHHHHHHHHHHHhcCCCCcceEEEEeecC
Confidence            45788899999999999999665 689999999853321         12245678899999999999999999998765


Q ss_pred             c--cceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE----cCCCCCe
Q 003199          605 Y--CNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL----DVNYQPK  676 (840)
Q Consensus       605 ~--~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~k  676 (840)
                      .  ..++||||+++|+|.+++....  ..+++.++..++.|++.||+|||+   .+|+||||||+||++    +.++.+|
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~k  156 (319)
T 4euu_A           80 TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYK  156 (319)
T ss_dssp             TTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEECTTSCEEEE
T ss_pred             CCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEeccCCCCceEE
Confidence            5  6799999999999999998653  238999999999999999999999   999999999999999    7778899


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccc--------cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY--------SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                      |+|||+++....    ........||+.|+|||++.        +..++.++|||||||++|||++|+.||.........
T Consensus       157 L~Dfg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~  232 (319)
T 4euu_A          157 LTDFGAARELED----DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN  232 (319)
T ss_dssp             ECCCTTCEECCT----TCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGC
T ss_pred             EccCCCceecCC----CCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchh
Confidence            999999987633    22334457999999999875        567899999999999999999999999753322211


Q ss_pred             hhhhhhhhhccc-cchhhh---------cccccC---CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          749 IIYWVSIKVDTK-EGIMEV---------LDKKLS---GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       749 ~~~~~~~~~~~~-~~~~~~---------~~~~~~---~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                      ............ ......         .....+   .........+.+++.+|++.||++|||++|++++..+....+.
T Consensus       233 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~~~~  312 (319)
T 4euu_A          233 KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRGN  312 (319)
T ss_dssp             HHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC---
T ss_pred             HHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhhcCC
Confidence            111111111000 000000         000111   1224566678889999999999999999999999998777665


Q ss_pred             C
Q 003199          816 E  816 (840)
Q Consensus       816 ~  816 (840)
                      .
T Consensus       313 ~  313 (319)
T 4euu_A          313 S  313 (319)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=2.2e-40  Score=368.58  Aligned_cols=258  Identities=21%  Similarity=0.271  Sum_probs=206.0

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.++|...+.||+|+||.||+|.. .+|+.||+|++.....        .....+.+.+|+++++.++||||+++++++
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~--------~~~~~~~~~~E~~il~~l~hpnIv~l~~~~   79 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL--------SARDHQKLEREARICRLLKHPNIVRLHDSI   79 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC--------HHHHHHHHHHHHHHHHHCCBTTBCCEEEEE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC--------CHHHHHHHHHHHHHHHhCCCcCCCeEEEEE
Confidence            4668899999999999999999954 5799999999854432        123356788999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc---CCCCCeee
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD---VNYQPKVA  678 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~  678 (840)
                      .+....++||||+++|+|.+.+.... .+++..+..++.||+.||+|||+   ++|+||||||+||+++   .++.+||+
T Consensus        80 ~~~~~~~lv~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~lH~---~givHrDlKp~NIll~~~~~~~~vkL~  155 (444)
T 3soa_A           80 SEEGHHYLIFDLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLA  155 (444)
T ss_dssp             ECSSEEEEEECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSSTTEEESBSSTTCCEEEC
T ss_pred             EECCEEEEEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEeccCCCCcEEEc
Confidence            99999999999999999999998764 69999999999999999999999   9999999999999998   45789999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++....   .........||+.|+|||++.+..++.++||||+||++|||++|+.||.+..    ....+......
T Consensus       156 DFG~a~~~~~---~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~----~~~~~~~i~~~  228 (444)
T 3soa_A          156 DFGLAIEVEG---EQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDED----QHRLYQQIKAG  228 (444)
T ss_dssp             CCSSCBCCCT---TCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSS----HHHHHHHHHHT
T ss_pred             cCceeEEecC---CCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCcc----HHHHHHHHHhC
Confidence            9999976543   2223345679999999999999899999999999999999999999997531    11111111000


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ..        ....+.+......+.+++.+|++.||++|||+.|++++-
T Consensus       229 ~~--------~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp  269 (444)
T 3soa_A          229 AY--------DFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHP  269 (444)
T ss_dssp             CC--------CCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSC
T ss_pred             CC--------CCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcCc
Confidence            00        001111222345667788899999999999999999873

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.2e-40  Score=361.13  Aligned_cols=260  Identities=22%  Similarity=0.286  Sum_probs=205.8

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +.+.|...+.||+|+||.||+|... +|+.||||++..........    ....+.+.+|+.+++.++||||+++++++.
T Consensus        10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~----~~~~~~~~~E~~il~~l~hpnIv~l~~~~~   85 (361)
T 2yab_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRR----GVCREEIEREVSILRQVLHPNIITLHDVYE   85 (361)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSS----SBCHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccc----hhHHHHHHHHHHHHHhCCCcCCCcEEEEEE
Confidence            3457888999999999999999654 79999999996554321111    112457889999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC----CCeee
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY----QPKVA  678 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~  678 (840)
                      +....++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   .+|+||||||+||+++.++    .+||+
T Consensus        86 ~~~~~~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~~vkl~  161 (361)
T 2yab_A           86 NRTDVVLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLI  161 (361)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCccCEEEE
Confidence            9999999999999999999997654 69999999999999999999999   9999999999999998876    79999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++....    ........||+.|+|||++.+..++.++||||+||++|||++|..||.+...  .   ........
T Consensus       162 DFG~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~--~---~~~~~i~~  232 (361)
T 2yab_A          162 DFGLAHEIED----GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--Q---ETLANITA  232 (361)
T ss_dssp             CCSSCEECCT----TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--H---HHHHHHHT
T ss_pred             ecCCceEcCC----CCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH--H---HHHHHHHh
Confidence            9999987633    2233456799999999999988999999999999999999999999975311  0   01000000


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ....    .+...   +......+.+++.+|+..||++|||+.|++++-
T Consensus       233 ~~~~----~~~~~---~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp  274 (361)
T 2yab_A          233 VSYD----FDEEF---FSQTSELAKDFIRKLLVKETRKRLTIQEALRHP  274 (361)
T ss_dssp             TCCC----CCHHH---HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTST
T ss_pred             cCCC----CCchh---ccCCCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence            0000    00000   011234567788899999999999999999763

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=8.4e-41  Score=364.83  Aligned_cols=261  Identities=25%  Similarity=0.317  Sum_probs=207.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|+..+.||+|+||+||+|.+.      +++.||||++....         .......+.+|+.++++++||||+++++
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~hpnIv~~~~  141 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---------SEQDELDFLMEALIISKFNHQNIVRCIG  141 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC---------CHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc---------ChhhHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            56788899999999999999743      46789999984322         1233457889999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      ++.+....++||||+++|+|.+++....      ..+++.+++.++.|++.||+|||+   ++|+||||||+|||++.++
T Consensus       142 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~  218 (367)
T 3l9p_A          142 VSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPG  218 (367)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSS
T ss_pred             EEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEEecCC
Confidence            9999999999999999999999997643      358999999999999999999999   9999999999999999554


Q ss_pred             ---CCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcch
Q 003199          674 ---QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNI  749 (840)
Q Consensus       674 ---~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~  749 (840)
                         .+||+|||+++...... .........||+.|+|||++.+..++.++|||||||++|||++ |+.||....  ....
T Consensus       219 ~~~~~kL~DFG~a~~~~~~~-~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~--~~~~  295 (367)
T 3l9p_A          219 PGRVAKIGDFGMARDIYRAG-YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS--NQEV  295 (367)
T ss_dssp             TTCCEEECCCHHHHHHHHHS-SCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--HHHH
T ss_pred             CCceEEECCCcccccccccc-ccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHH
Confidence               59999999998765432 2233445678999999999999999999999999999999998 999997531  1111


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCC
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR  814 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~  814 (840)
                      ...             +...............+.+++.+||+.||++|||+.+++++|+.+....
T Consensus       296 ~~~-------------i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          296 LEF-------------VTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             HHH-------------HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             HHH-------------HHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence            100             0000011111122345778888999999999999999999998765443

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.5e-40  Score=356.28  Aligned_cols=257  Identities=25%  Similarity=0.388  Sum_probs=204.7

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||+|... +++.||||++.....         ....+.+.+|+.+++.++||||+++++++.+
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~   76 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHENVVKFYGHRRE   76 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------------CHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc---------cchHHHHHHHHHHHHhCCCCCCCeEEEEEec
Confidence            357888999999999999999655 799999999854321         1223567889999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++.... .+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        77 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~a  152 (323)
T 3tki_A           77 GNIQYLFLEYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLA  152 (323)
T ss_dssp             SSEEEEEEECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             CCeEEEEEEcCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccccchHHEEEeCCCCEEEEEeecc
Confidence            999999999999999999997654 68999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +.+... ..........||+.|+|||++.+..+ +.++|||||||++|||++|+.||............|....      
T Consensus       153 ~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~------  225 (323)
T 3tki_A          153 TVFRYN-NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKK------  225 (323)
T ss_dssp             EECEET-TEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTC------
T ss_pred             ceeccC-CcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhccc------
Confidence            765432 12222345679999999999987765 7899999999999999999999976433222222221110      


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                             ............+.+++.+|++.||++|||+.|++++-.
T Consensus       226 -------~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~  264 (323)
T 3tki_A          226 -------TYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRW  264 (323)
T ss_dssp             -------TTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTT
T ss_pred             -------ccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhChh
Confidence                   001111223345677888999999999999999998754

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2e-40  Score=360.67  Aligned_cols=256  Identities=22%  Similarity=0.320  Sum_probs=205.8

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.+.|+..+.||+|+||.||+|.. .+|+.||||++......        ....+.+.+|+.+++.++||||+++++++
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--------~~~~~~~~~E~~il~~l~hpnIv~~~~~~   97 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS--------ARDFQKLEREARICRKLQHPNIVRLHDSI   97 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC--------HHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC--------HHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            4567899999999999999999965 47899999998544321        23346788999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC---CCCeee
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN---YQPKVA  678 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~  678 (840)
                      .+....++||||+++|+|.+++.... .+++.++..++.||+.||+|||+   ++|+||||||+||+++.+   +.+||+
T Consensus        98 ~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~  173 (362)
T 2bdw_A           98 QEESFHYLVFDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLA  173 (362)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEEC
T ss_pred             EeCCEEEEEEecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEe
Confidence            99999999999999999999997654 68999999999999999999999   999999999999999865   459999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||++.....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+..    ....+......
T Consensus       174 DfG~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~----~~~~~~~i~~~  245 (362)
T 2bdw_A          174 DFGLAIEVND----SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED----QHRLYAQIKAG  245 (362)
T ss_dssp             CCTTCBCCTT----CCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHT
T ss_pred             ecCcceEecC----CcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHhC
Confidence            9999976643    222345679999999999999899999999999999999999999997531    11111111000


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..        ......+......+.+++.+|++.||++||++.|++++
T Consensus       246 ~~--------~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          246 AY--------DYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             CC--------CCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             CC--------CCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            00        00011122234567788889999999999999999876

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=2e-40  Score=359.63  Aligned_cols=263  Identities=25%  Similarity=0.353  Sum_probs=208.8

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      .++|...+.||+|+||.||+|...      +++.||||++....         .....+.+.+|+.++++++||||++++
T Consensus        46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~hp~iv~~~  116 (343)
T 1luf_A           46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---------SADMQADFQREAALMAEFDNPNIVKLL  116 (343)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---------CHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc---------CHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            357888899999999999999764      34899999985332         123456789999999999999999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC-----------------------CCCChHHHHHHHHHHHHHHHHHhhcCCC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL-----------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLS  655 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~  655 (840)
                      +++.+....++||||+++|+|.+++....                       ..+++.+++.++.|++.||+|||+   +
T Consensus       117 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~---~  193 (343)
T 1luf_A          117 GVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---R  193 (343)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             EEEccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence            99999999999999999999999997632                       468999999999999999999999   9


Q ss_pred             CeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-
Q 003199          656 PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-  734 (840)
Q Consensus       656 ~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-  734 (840)
                      +|+||||||+||+++.++.+||+|||+++...... .........+|+.|+|||.+.+..++.++||||||+++|||++ 
T Consensus       194 ~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~  272 (343)
T 1luf_A          194 KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSAD-YYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSY  272 (343)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGG-CBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CeecCCCCcceEEECCCCeEEEeecCCCcccccCc-cccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhc
Confidence            99999999999999999999999999998764421 1122344568899999999998899999999999999999999 


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCC
Q 003199          735 GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR  814 (840)
Q Consensus       735 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~  814 (840)
                      |+.||.+...  ...   ..          .+.+.............+.+++.+||+.||++||++.+++++|+++....
T Consensus       273 g~~p~~~~~~--~~~---~~----------~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~  337 (343)
T 1luf_A          273 GLQPYYGMAH--EEV---IY----------YVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERA  337 (343)
T ss_dssp             TCCTTTTSCH--HHH---HH----------HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred             CCCcCCCCCh--HHH---HH----------HHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhh
Confidence            9999975311  111   00          01111111111122346777888999999999999999999999887654


Q ss_pred             C
Q 003199          815 F  815 (840)
Q Consensus       815 ~  815 (840)
                      .
T Consensus       338 ~  338 (343)
T 1luf_A          338 E  338 (343)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.6e-40  Score=355.07  Aligned_cols=260  Identities=24%  Similarity=0.320  Sum_probs=206.8

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.+.|...+.||+|+||.||+|... +|+.||||++..........    ....+.+.+|+.++++++||||+++++++
T Consensus         8 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~----~~~~~~~~~E~~~l~~l~hp~iv~~~~~~   83 (326)
T 2y0a_A            8 NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRR----GVSREDIEREVSILKEIQHPNVITLHEVY   83 (326)
T ss_dssp             CHHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSS----SBCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             CcccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccc----hhhHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            35577999999999999999999654 79999999986544321111    11246788999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC----CCee
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY----QPKV  677 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl  677 (840)
                      .+....++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++    .+||
T Consensus        84 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl  159 (326)
T 2y0a_A           84 ENKTDVILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKI  159 (326)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSSSCCEEE
T ss_pred             EeCCEEEEEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHH---CCeEcCCCCHHHEEEecCCCCCCCEEE
Confidence            99999999999999999999997654 68999999999999999999999   9999999999999999877    7999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +|||+++....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  ...  ..... 
T Consensus       160 ~Dfg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~--~~~~~-  230 (326)
T 2y0a_A          160 IDFGLAHKIDF----GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QET--LANVS-  230 (326)
T ss_dssp             CCCTTCEECCT----TSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HHH--HHHHH-
T ss_pred             EECCCCeECCC----CCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH--HHH--HHHHH-
Confidence            99999987632    1223446799999999999988999999999999999999999999975311  000  00000 


Q ss_pred             ccccchhhhcccccCC-CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTKEGIMEVLDKKLSG-SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ..        ...... .+......+.+++.+|++.||++|||+.|++++-
T Consensus       231 ~~--------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp  273 (326)
T 2y0a_A          231 AV--------NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP  273 (326)
T ss_dssp             HT--------CCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHST
T ss_pred             hc--------CCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcCC
Confidence            00        000000 0011234567788899999999999999999864

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=2.3e-40  Score=348.25  Aligned_cols=255  Identities=23%  Similarity=0.295  Sum_probs=193.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||.||+|....    +..||+|++....         .....+.+.+|+.++++++||||+++++++
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   85 (281)
T 1mp8_A           15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---------SDSVREKFLQEALTMRQFDHPHIVKLIGVI   85 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---------SHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC---------CHHHHHHHHHHHHHHHhCCCCccceEEEEE
Confidence            568888999999999999996642    4579999874322         123456789999999999999999999998


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      . ....++||||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||
T Consensus        86 ~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg  161 (281)
T 1mp8_A           86 T-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG  161 (281)
T ss_dssp             C-SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC--
T ss_pred             c-cCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEECccc
Confidence            5 456789999999999999998776679999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++.....  .........+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.+...  ......        
T Consensus       162 ~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~--~~~~~~--------  229 (281)
T 1mp8_A          162 LSRYMEDS--TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVIGR--------  229 (281)
T ss_dssp             -------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHH--------
T ss_pred             cccccCcc--cccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH--HHHHHH--------
Confidence            99876432  1222334457789999999988899999999999999999997 9999975321  111111        


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                           +......+........+.+++.+|++.||++|||+.|++++|+++
T Consensus       230 -----i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~  274 (281)
T 1mp8_A          230 -----IENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI  274 (281)
T ss_dssp             -----HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----HHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                 001111111112334567788899999999999999999999865

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-40  Score=357.93  Aligned_cols=251  Identities=25%  Similarity=0.357  Sum_probs=201.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|...+.||+|+||.||+|.. .+|+.||||++......       .......+.+|+.+++.++||||+++++++.+.
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~   81 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLK-------KSDMHMRVEREISYLKLLRHPHIIKLYDVITTP   81 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHH-------HTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHcc-------chhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC
Confidence            4678889999999999999965 67999999998432211       112235688999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+ +|+|.+++.... .+++.++..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||++.
T Consensus        82 ~~~~lv~E~~-~g~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG~s~  156 (336)
T 3h4j_B           82 TDIVMVIEYA-GGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSN  156 (336)
T ss_dssp             SEEEEEECCC-CEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCSSCTB
T ss_pred             CEEEEEEECC-CCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEeccce
Confidence            9999999999 789999887654 69999999999999999999999   899999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ....    ........||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+......  ..          .+
T Consensus       157 ~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~--~~----------~i  220 (336)
T 3h4j_B          157 IMTD----GNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL--FK----------KV  220 (336)
T ss_dssp             TTTT----SBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC--BC----------CC
T ss_pred             eccC----CcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH--HH----------HH
Confidence            7643    223345679999999999988776 7899999999999999999999975321110  00          00


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .. .....+..   ....+.+++.+|++.||.+|||++|++++-.
T Consensus       221 ~~-~~~~~p~~---~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~  261 (336)
T 3h4j_B          221 NS-CVYVMPDF---LSPGAQSLIRRMIVADPMQRITIQEIRRDPW  261 (336)
T ss_dssp             CS-SCCCCCTT---SCHHHHHHHHTTSCSSGGGSCCHHHHTTCHH
T ss_pred             Hc-CCCCCccc---CCHHHHHHHHHHcCCChhHCcCHHHHHhChh
Confidence            00 00011112   2345667888999999999999999998743

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.3e-40  Score=374.05  Aligned_cols=256  Identities=26%  Similarity=0.389  Sum_probs=205.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|...+.||+|+||.||+|..+++..||||++....           ...+.|.+|+.++++++||||+++++++. ..
T Consensus       188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-----------~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~  255 (454)
T 1qcf_A          188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-----------MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KE  255 (454)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-----------BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SS
T ss_pred             HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-----------ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CC
Confidence            4677888999999999999999888999999985432           12467899999999999999999999986 56


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++|+|.+++.... ..+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||+++
T Consensus       256 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~  332 (454)
T 1qcf_A          256 PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLAR  332 (454)
T ss_dssp             SCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTCCEEECSTTGGG
T ss_pred             ccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCCcEEEeeCCCce
Confidence            7899999999999999997542 368899999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  .........+|+.|+|||++....++.++|||||||++|||++ |+.||.+...  .......          
T Consensus       333 ~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i----------  398 (454)
T 1qcf_A          333 VIEDN--EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN--PEVIRAL----------  398 (454)
T ss_dssp             GBCCH--HHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHH----------
T ss_pred             EcCCC--ceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHHH----------
Confidence            75321  1111233456789999999998899999999999999999999 9999975311  1111000          


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                         ......+........+.+++.+||+.||++|||+.+|++.|+++...
T Consensus       399 ---~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~  445 (454)
T 1qcf_A          399 ---ERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA  445 (454)
T ss_dssp             ---HHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred             ---HcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence               00000111122345677888899999999999999999999987643

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=1.7e-40  Score=357.02  Aligned_cols=258  Identities=24%  Similarity=0.336  Sum_probs=198.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcE----EEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEV----VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|+..+.||+|+||+||+|... +|+.    ||+|.+....         .....+.+.+|+.++++++||||++++++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   85 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---------SPKANKEILDEAYVMASVDNPHVCRLLGI   85 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC----------------CHHHHHHHHHHHHHCCBTTBCCEEEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc---------CHHHHHHHHHHHHHHHhCCCCCEeEEEEE
Confidence            46788899999999999999754 5554    5777663221         12335678999999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +.+.. .++|+||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+||
T Consensus        86 ~~~~~-~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Df  161 (327)
T 3poz_A           86 CLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDF  161 (327)
T ss_dssp             EESSS-EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCT
T ss_pred             EecCC-eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEccC
Confidence            98754 689999999999999998876689999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+++...... .........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.....  ........     
T Consensus       162 g~a~~~~~~~-~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~-----  233 (327)
T 3poz_A          162 GLAKLLGAEE-KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILE-----  233 (327)
T ss_dssp             THHHHHTTTC-C-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHH-----
T ss_pred             cceeEccCCc-ccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH--HHHHHHHH-----
Confidence            9998875422 2223334567889999999999999999999999999999999 9999975311  11111100     


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                              ..............+.+++.+||+.||++||++.|++++|+.+..
T Consensus       234 --------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          234 --------KGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             --------TTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             --------cCCCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence                    000011112233467788889999999999999999999987644

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.2e-40  Score=345.67  Aligned_cols=256  Identities=26%  Similarity=0.337  Sum_probs=207.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|...+++.||+|++.....           ..+.+.+|++++++++||||+++++++.+..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-----------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   76 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----------SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA   76 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-----------CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-----------CHHHHHHHHHHHHhCCCCCEeeEEEEEccCC
Confidence            46778889999999999999988889999999854321           1356889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++......+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++.
T Consensus        77 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~  153 (267)
T 3t9t_A           77 PICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  153 (267)
T ss_dssp             SCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             CeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEECCCCCEEEcccccccc
Confidence            9999999999999999998776678999999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....  .........+++.|+|||.+.+..++.++||||||+++|||++ |+.||....  ..   .......       
T Consensus       154 ~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~---~~~~~i~-------  219 (267)
T 3t9t_A          154 VLDD--QYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS--NS---EVVEDIS-------  219 (267)
T ss_dssp             BCCH--HHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--HH---HHHHHHH-------
T ss_pred             cccc--cccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC--HH---HHHHHHh-------
Confidence            5321  1112233457788999999988899999999999999999999 899987531  11   1110000       


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      .......+..   ....+.+++.+|++.||++|||+.+++++|+++..
T Consensus       220 ~~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          220 TGFRLYKPRL---ASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             TTCCCCCCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCcCCCCcc---CcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            0000111111   23456778889999999999999999999987643

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.9e-40  Score=350.13  Aligned_cols=265  Identities=24%  Similarity=0.333  Sum_probs=199.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||+||+|...+|+.||||++......        ....+.+.+|++++++++||||+++++++.+..
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   73 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED--------EGIPSTTIREISILKELKHSNIVKLYDVIHTKK   73 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG--------GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccc--------cccchhHHHHHHHHHhcCCCCEeeeeeEEccCC
Confidence            467888999999999999998888999999998543311        122356778999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++ +|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.
T Consensus        74 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  149 (288)
T 1ob3_A           74 RLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARA  149 (288)
T ss_dssp             CEEEEEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHH
T ss_pred             eEEEEEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECccccc
Confidence            99999999975 9999998765679999999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh-ccccch
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV-DTKEGI  763 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~  763 (840)
                      ...   .........||+.|+|||++.+. .++.++||||+||++|||++|+.||...... ........... ......
T Consensus       150 ~~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~  225 (288)
T 1ob3_A          150 FGI---PVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEA-DQLMRIFRILGTPNSKNW  225 (288)
T ss_dssp             HCC------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCTTTS
T ss_pred             cCc---cccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHHCCCChhhc
Confidence            642   12223445789999999998764 5899999999999999999999999753211 00000000000 000000


Q ss_pred             hh-----hccccc--------CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 ME-----VLDKKL--------SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~-----~~~~~~--------~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..     ..+...        ..........+.+++.+|++.||++|||+.|++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  281 (288)
T 1ob3_A          226 PNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (288)
T ss_dssp             TTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             hhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            00     000000        00011223456788889999999999999999876

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=360.13  Aligned_cols=253  Identities=24%  Similarity=0.343  Sum_probs=202.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|... +|+.||+|++.....       ......+.+.+|+.+++.++||||+++++++.+.
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~-------~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~   87 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKC-------VERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDE   87 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhc-------ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC
Confidence            56888999999999999999654 689999999853321       1122346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        88 ~~~~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~  163 (384)
T 4fr4_A           88 EDMFMVVDLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFNIAA  163 (384)
T ss_dssp             SEEEEEECCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEECCCCCEEEeccceee
Confidence            99999999999999999998764 69999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCcccccc---CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ....    ........||+.|+|||++.+   ..++.++|||||||++|||++|+.||........  .........   
T Consensus       164 ~~~~----~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~--~~~~~~~~~---  234 (384)
T 4fr4_A          164 MLPR----ETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSS--KEIVHTFET---  234 (384)
T ss_dssp             ECCT----TCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCH--HHHHHHHHH---
T ss_pred             eccC----CCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccH--HHHHHHHhh---
Confidence            6532    233455689999999999864   4589999999999999999999999975322111  111110000   


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-MNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-~~evl~~  806 (840)
                           .....+..   ....+.+++.+|++.||++||+ +.++.++
T Consensus       235 -----~~~~~p~~---~s~~~~~li~~lL~~dP~~R~s~~~~l~~h  272 (384)
T 4fr4_A          235 -----TVVTYPSA---WSQEMVSLLKKLLEPNPDQRFSQLSDVQNF  272 (384)
T ss_dssp             -----CCCCCCTT---SCHHHHHHHHHHSCSSGGGSCCSHHHHHTS
T ss_pred             -----cccCCCCc---CCHHHHHHHHHHhcCCHhHhcccHHHHHcC
Confidence                 00111222   2345677888999999999998 7777764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1.2e-40  Score=363.79  Aligned_cols=259  Identities=26%  Similarity=0.351  Sum_probs=204.4

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCccee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKL  597 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l  597 (840)
                      .++|...+.||+|+||.||+|.+      .+++.||||++....         .....+.+.+|++++.++ +||||+++
T Consensus        21 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           21 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA---------THSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC---------CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC---------CHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            35788899999999999999963      356899999985332         123356789999999999 78999999


Q ss_pred             eeEEecCcc-ceEEEeecCCCChHHHhhcCCC------------------------------------------------
Q 003199          598 YCYFSSLYC-NLLVYEYMPNGNLWDALHKGLV------------------------------------------------  628 (840)
Q Consensus       598 ~~~~~~~~~-~~lV~e~~~~gsL~~~l~~~~~------------------------------------------------  628 (840)
                      ++++.+... .++||||+++|+|.+++.....                                                
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK  171 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence            999987554 8999999999999999976431                                                


Q ss_pred             -----------------CCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCC
Q 003199          629 -----------------HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG  691 (840)
Q Consensus       629 -----------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~  691 (840)
                                       .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++..... .
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~-~  247 (359)
T 3vhe_A          172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD-P  247 (359)
T ss_dssp             ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC-T
T ss_pred             ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEeccceeeeccc-c
Confidence                             18899999999999999999999   99999999999999999999999999999866432 2


Q ss_pred             CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcccc
Q 003199          692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK  770 (840)
Q Consensus       692 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (840)
                      .........||+.|+|||++.+..++.++||||||+++|||++ |+.||....... ....  ...        ......
T Consensus       248 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~~~~--~~~--------~~~~~~  316 (359)
T 3vhe_A          248 DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCR--RLK--------EGTRMR  316 (359)
T ss_dssp             TCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-HHHH--HHH--------HTCCCC
T ss_pred             cchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH-HHHH--HHH--------cCCCCC
Confidence            2233445678999999999999999999999999999999998 999997532111 1100  000        000111


Q ss_pred             cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       771 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ....   ....+.+++.+||+.||++|||+.|++++|+++
T Consensus       317 ~~~~---~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~  353 (359)
T 3vhe_A          317 APDY---TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  353 (359)
T ss_dssp             CCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence            1111   234567788899999999999999999999865

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=4.3e-40  Score=350.03  Aligned_cols=262  Identities=27%  Similarity=0.361  Sum_probs=200.1

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhc--cCCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN--IRHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~  602 (840)
                      .++|+..+.||+|+||+||+|.. +|+.||||++....             ...+..|.+++..  ++||||+++++++.
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~-------------~~~~~~e~~~~~~~~l~h~niv~~~~~~~   72 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD-------------EKSWFRETELYNTVMLRHENILGFIASDM   72 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG-------------HHHHHHHHHHHHHTCCCCTTBCCEEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc-------------chhhHHHHHHHHHhhccCcCeeeEEEeec
Confidence            45788899999999999999987 58999999984321             2344556666555  79999999999865


Q ss_pred             c----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHh--------hcCCCCeEecCCCCCCEEEc
Q 003199          603 S----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH--------HGLLSPIIHRDIKSTNILLD  670 (840)
Q Consensus       603 ~----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlk~~Nill~  670 (840)
                      .    ....++||||+++|+|.+++...  .+++..+..++.|++.||+|||        +   ++|+||||||+||+++
T Consensus        73 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~Nill~  147 (301)
T 3q4u_A           73 TSRHSSTQLWLITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGK---PAIAHRDLKSKNILVK  147 (301)
T ss_dssp             EEETTEEEEEEEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCB---CEEECSCCCGGGEEEC
T ss_pred             cccCCCceeEEehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCC---CCeecCCCChHhEEEc
Confidence            4    34578999999999999999754  6899999999999999999999        7   8999999999999999


Q ss_pred             CCCCCeeecccchhhhhccCCCC-cceecccccccccCccccccC------CCCccccchhHHHHHHHHHhC--------
Q 003199          671 VNYQPKVADFGIAKVLQARGGKD-STTTVIAGTYGYLAPEYAYSS------KATTKCDVYSFGVVLMELITG--------  735 (840)
Q Consensus       671 ~~~~~kl~Dfg~a~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~tg--------  735 (840)
                      .++.+||+|||+++......... .......||+.|+|||++.+.      .++.++|||||||++|||++|        
T Consensus       148 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~  227 (301)
T 3q4u_A          148 KNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVE  227 (301)
T ss_dssp             TTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCC
T ss_pred             CCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccc
Confidence            99999999999997654321111 112345799999999998776      455799999999999999999        


Q ss_pred             --CCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCC--cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          736 --RKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGS--FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       736 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                        +.||....................      ......+..  .......+.+++.+||+.||++|||+.|+++.|++++
T Consensus       228 ~~~~pf~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~  301 (301)
T 3q4u_A          228 DYKPPFYDVVPNDPSFEDMRKVVCVD------QQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKID  301 (301)
T ss_dssp             CCCCTTTTTSCSSCCHHHHHHHHTTS------CCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHC
T ss_pred             cccccccccCCCCcchhhhhHHHhcc------CCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhccC
Confidence              788765433322222211111000      011111111  1245677889999999999999999999999998763

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=4.3e-40  Score=360.09  Aligned_cols=255  Identities=20%  Similarity=0.298  Sum_probs=205.4

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +.+.|...+.||+|+||.||+|.. .+|+.||+|++....          ......+.+|+++++.++||||+++++++.
T Consensus        49 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~----------~~~~~~~~~E~~il~~l~hpnIv~~~~~~~  118 (387)
T 1kob_A           49 VYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY----------PLDKYTVKNEISIMNQLHHPKLINLHDAFE  118 (387)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----------HHHHHHHHHHHHHHTTCCSTTBCCEEEEEE
T ss_pred             cccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc----------hhhHHHHHHHHHHHHhCCCcCCCeEEEEEE
Confidence            346788999999999999999965 478999999985332          122456889999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC--CCCCeeecc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV--NYQPKVADF  680 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~--~~~~kl~Df  680 (840)
                      +....++||||+++|+|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.  ++.+||+||
T Consensus       119 ~~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~vkL~DF  195 (387)
T 1kob_A          119 DKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDF  195 (387)
T ss_dssp             CSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCC
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccchHHeEEecCCCCceEEEec
Confidence            9999999999999999999998766679999999999999999999999   99999999999999974  467999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |+++....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+...    . ..........
T Consensus       196 G~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~----~-~~~~~i~~~~  266 (387)
T 1kob_A          196 GLATKLNP----DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD----L-ETLQNVKRCD  266 (387)
T ss_dssp             TTCEECCT----TSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH----H-HHHHHHHHCC
T ss_pred             ccceecCC----CcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH----H-HHHHHHHhCC
Confidence            99987632    2233455799999999999999999999999999999999999999975311    1 1110000000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      .    ..+   ...+......+.+++.+|++.||++|||+.|++++-
T Consensus       267 ~----~~~---~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp  306 (387)
T 1kob_A          267 W----EFD---EDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHP  306 (387)
T ss_dssp             C----CCC---SSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTST
T ss_pred             C----CCC---ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCc
Confidence            0    001   111122345677888899999999999999999873

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=2.2e-40  Score=362.23  Aligned_cols=256  Identities=21%  Similarity=0.294  Sum_probs=201.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  603 (840)
                      ++|+..+.||+|+||+||+|..+ +++.||||++.......       ....+.+.+|..++.++ +||||+++++++.+
T Consensus        52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~-------~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~  124 (396)
T 4dc2_A           52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVND-------DEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT  124 (396)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC-----------CCHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC-------HHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEE
Confidence            56888999999999999999665 68899999986543211       12234567889998887 89999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|..++.... .+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||+|
T Consensus       125 ~~~~~lV~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DFGla  200 (396)
T 4dc2_A          125 ESRLFFVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMC  200 (396)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             CCEEEEEEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEECCCCCEEEeeccee
Confidence            999999999999999999998764 69999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc---hhhh-hhhhhcc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN---IIYW-VSIKVDT  759 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~---~~~~-~~~~~~~  759 (840)
                      +....   ........+||+.|+|||++.+..++.++|||||||++|||++|+.||.........   .... ...... 
T Consensus       201 ~~~~~---~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~-  276 (396)
T 4dc2_A          201 KEGLR---PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE-  276 (396)
T ss_dssp             BCCCC---TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHH-
T ss_pred             eeccc---CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhc-
Confidence            75322   223345678999999999999999999999999999999999999999753221110   0000 000000 


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM------NEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~------~evl~~  806 (840)
                             ....++..   ...++.+++.+|++.||++||++      .|++++
T Consensus       277 -------~~~~~p~~---~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H  319 (396)
T 4dc2_A          277 -------KQIRIPRS---LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  319 (396)
T ss_dssp             -------CCCCCCTT---SCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred             -------cccCCCCc---CCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence                   01112222   23456678889999999999985      677766

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=6.5e-40  Score=351.22  Aligned_cols=250  Identities=26%  Similarity=0.350  Sum_probs=201.8

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |...+.||+|+||.||+|... +|+.||||++.....          ...+.+.+|+.++++++||||+++++++.....
T Consensus        47 ~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~----------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  116 (321)
T 2c30_A           47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ----------QRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEE  116 (321)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----------CSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE
T ss_pred             hhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch----------hHHHHHHHHHHHHHhCCCCCcceEEEEEEECCE
Confidence            666778999999999999765 799999999854321          124568899999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++||||+++|+|.+++...  .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++..
T Consensus       117 ~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~  191 (321)
T 2c30_A          117 LWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYLHA---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQI  191 (321)
T ss_dssp             EEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCcEEEeeeeeeeec
Confidence            99999999999999998764  68999999999999999999999   99999999999999999999999999998765


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      ...   ........||+.|+|||++.+..++.++||||||+++|||++|+.||.....    . ......       ...
T Consensus       192 ~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~----~-~~~~~~-------~~~  256 (321)
T 2c30_A          192 SKD---VPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP----V-QAMKRL-------RDS  256 (321)
T ss_dssp             CSS---SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----H-HHHHHH-------HHS
T ss_pred             ccC---ccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----H-HHHHHH-------hcC
Confidence            331   1223456799999999999999999999999999999999999999975311    1 111000       000


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ...... ........+.+++.+|++.||++|||+.|++++-.
T Consensus       257 ~~~~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~  297 (321)
T 2c30_A          257 PPPKLK-NSHKVSPVLRDFLERMLVRDPQERATAQELLDHPF  297 (321)
T ss_dssp             SCCCCT-TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGG
T ss_pred             CCCCcC-ccccCCHHHHHHHHHHccCChhhCcCHHHHhcChh
Confidence            011110 11122345677888999999999999999998743

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.8e-40  Score=362.14  Aligned_cols=258  Identities=26%  Similarity=0.322  Sum_probs=206.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC--------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN--------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~  596 (840)
                      ++|...+.||+|+||.||+|...        .+..||||++....         .....+.+.+|+++++++ +||||++
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~~hpnIv~  139 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA---------TEKDLSDLISEMEMMKMIGKHKNIIN  139 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC---------CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc---------CHHHHHHHHHHHHHHHHhcCCchhhh
Confidence            57788899999999999999642        34679999985432         123456788999999999 8999999


Q ss_pred             eeeEEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          597 LYCYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      +++++......++||||+++|+|.+++....               ..+++.++..++.|++.||+|||+   .+|+|||
T Consensus       140 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~D  216 (382)
T 3tt0_A          140 LLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRD  216 (382)
T ss_dssp             EEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             heeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCEecCC
Confidence            9999999999999999999999999998653               358999999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+||+++.++.+||+|||+++...... .........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.
T Consensus       217 lkp~NIll~~~~~~kL~DFG~a~~~~~~~-~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~  295 (382)
T 3tt0_A          217 LAARNVLVTEDNVMKIADFGLARDIHHID-YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  295 (382)
T ss_dssp             CCGGGEEECTTCCEEECSCSCCCCSSCCC-TTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CCcceEEEcCCCcEEEcccCccccccccc-ccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999998664321 1123344567889999999999999999999999999999999 999997


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ...  ..   ........       .........   ....+.+++.+||+.||++|||+.|++++|+++.
T Consensus       296 ~~~--~~---~~~~~~~~-------~~~~~~~~~---~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~  351 (382)
T 3tt0_A          296 GVP--VE---ELFKLLKE-------GHRMDKPSN---CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV  351 (382)
T ss_dssp             TCC--HH---HHHHHHHT-------TCCCCCCSS---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCC--HH---HHHHHHHc-------CCCCCCCcc---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            531  11   11110000       001111122   2345677888999999999999999999998754

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=9.5e-41  Score=361.15  Aligned_cols=252  Identities=25%  Similarity=0.319  Sum_probs=198.6

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      .++|+..+.||+|+||+||+|..+ +|+.||||++.....       ......+.+.+|..+++.+ .||||+++++++.
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~-------~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~   94 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVI-------LQDDDVECTMTEKRILSLARNHPFLTQLFCCFQ   94 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-------HHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHh-------cchhHHHHHHHHHHHHHhccCCCceeeEEEEEE
Confidence            467888999999999999999654 689999999854321       1123356678899999988 6999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      +....++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||+
T Consensus        95 ~~~~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g~ikL~DFG~  170 (353)
T 3txo_A           95 TPDRLFFVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGM  170 (353)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCCCEEEccccc
Confidence            9999999999999999999998764 69999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      |+....   ........+||+.|+|||++.+..++.++||||+||++|||++|+.||.....     ..........   
T Consensus       171 a~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i~~~---  239 (353)
T 3txo_A          171 CKEGIC---NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE-----DDLFEAILND---  239 (353)
T ss_dssp             CBCSCC------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHC---
T ss_pred             eeeccc---CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH-----HHHHHHHHcC---
Confidence            975322   22334556899999999999988899999999999999999999999975311     1111111100   


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM------NEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~------~evl~~  806 (840)
                           ....+..+   ...+.+++.+|++.||++||++      .|+++|
T Consensus       240 -----~~~~p~~~---~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h  281 (353)
T 3txo_A          240 -----EVVYPTWL---HEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH  281 (353)
T ss_dssp             -----CCCCCTTS---CHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred             -----CCCCCCCC---CHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence                 01112222   2446678889999999999998      788775

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=6.1e-41  Score=360.87  Aligned_cols=278  Identities=24%  Similarity=0.296  Sum_probs=207.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|+..+.||+|+||.||+|.+     .+++.||||++....          ....+.+.+|++++++++||||++++++
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l~h~~i~~~~~~   92 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG----------PDQQRDFQREIQILKALHSDFIVKYRGV   92 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC----------HHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC----------HHHHHHHHHHHHHHHhcCCCceeEEEEE
Confidence            4678889999999999999974     468899999985332          2335678999999999999999999998


Q ss_pred             Ee--cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          601 FS--SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       601 ~~--~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      +.  +....++||||+++++|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+
T Consensus        93 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~  169 (327)
T 3lxl_A           93 SYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIA  169 (327)
T ss_dssp             EECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEEC
T ss_pred             EecCCCceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEc
Confidence            86  4556789999999999999998755569999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++................||+.|+|||++.+..++.++||||||+++|||++|+.||............+.. ...
T Consensus       170 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~-~~~  248 (327)
T 3lxl_A          170 DFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCER-DVP  248 (327)
T ss_dssp             CGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC-----CC
T ss_pred             ccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhccccc-ccc
Confidence            9999987643222222334456888999999998888999999999999999999999998642110000000000 000


Q ss_pred             cccchhhhccc-ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCC
Q 003199          759 TKEGIMEVLDK-KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFES  817 (840)
Q Consensus       759 ~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~  817 (840)
                      ........... ............+.+++.+|++.||++|||+.|++++|+.+.......
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~  308 (327)
T 3lxl_A          249 ALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRGC  308 (327)
T ss_dssp             HHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-------
T ss_pred             cHHHHHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcCc
Confidence            00000111111 111112233456778888999999999999999999999876554433

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=5.3e-40  Score=353.93  Aligned_cols=260  Identities=19%  Similarity=0.204  Sum_probs=205.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  603 (840)
                      .+|...+.||+|+||.||+|.. .+|+.||||++.....            .+.+.+|+++++++ +||||+++++++..
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------------~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   76 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR------------APQLHLEYRFYKQLGSGDGIPQVYYFGPC   76 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS------------SCCHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc------------hHHHHHHHHHHHHhhCCCCCCEEEEEEec
Confidence            4678889999999999999965 5799999999854321            12477899999999 89999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC-----Ceee
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ-----PKVA  678 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~-----~kl~  678 (840)
                      ....++||||+ +++|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.     +||+
T Consensus        77 ~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~  152 (330)
T 2izr_A           77 GKYNAMVLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHII  152 (330)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEEC
T ss_pred             CCccEEEEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEE
Confidence            99999999999 999999998765579999999999999999999999   99999999999999998876     9999


Q ss_pred             cccchhhhhccCCCC----cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          679 DFGIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      |||+++.+.......    .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.....  ......
T Consensus       153 DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~--~~~~~~  230 (330)
T 2izr_A          153 DFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT--LKERYQ  230 (330)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSS--HHHHHH
T ss_pred             EcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccccc--HHHHHH
Confidence            999998764422211    12245689999999999999999999999999999999999999998642211  111111


Q ss_pred             hhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .......   ..........+   . ++.+++.+|++.||.+||++.++.+.|+++
T Consensus       231 ~i~~~~~---~~~~~~~~~~~---p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~  279 (330)
T 2izr_A          231 KIGDTKR---ATPIEVLCENF---P-EMATYLRYVRRLDFFEKPDYDYLRKLFTDL  279 (330)
T ss_dssp             HHHHHHH---HSCHHHHTTTC---H-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred             HHHhhhc---cCCHHHHhccC---h-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence            0000000   00000011111   2 677888899999999999999999998754

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.7e-40  Score=354.38  Aligned_cols=262  Identities=27%  Similarity=0.367  Sum_probs=200.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC-----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS-----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      +.|+..+.||+|+||.||+|....     +..||||++....         .......+.+|+.++++++||||++++++
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~  114 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY---------TEKQRVDFLGEAGIMGQFSHHNIIRLEGV  114 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC---------CHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC---------CHHHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            346667899999999999996542     2369999985332         12335678899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +.+....++||||+++|+|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus       115 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Df  191 (333)
T 1mqb_A          115 ISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDF  191 (333)
T ss_dssp             ECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC
T ss_pred             EecCCCcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECCC
Confidence            999999999999999999999998766679999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+++................+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.....  ...   ..     
T Consensus       192 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~--~~~---~~-----  261 (333)
T 1mqb_A          192 GLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN--HEV---MK-----  261 (333)
T ss_dssp             CC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHH---HH-----
T ss_pred             CcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH--HHH---HH-----
Confidence            999876543222222334456789999999998899999999999999999999 9999965311  000   00     


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR  814 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~  814 (840)
                           .+......+........+.+++.+||+.||++||++.+++++|+++....
T Consensus       262 -----~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~  311 (333)
T 1mqb_A          262 -----AINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP  311 (333)
T ss_dssp             -----HHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             -----HHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence                 00111111111223345778888999999999999999999998765433

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=5.5e-40  Score=350.27  Aligned_cols=248  Identities=26%  Similarity=0.374  Sum_probs=202.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|... +|+.||+|++.....       ......+.+.+|+.+++.++||||+++++++.+.
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~   78 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIV-------VRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA   78 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-------hhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeC
Confidence            56888899999999999999664 799999999854321       1112346678899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus        79 ~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~  154 (318)
T 1fot_A           79 QQIFMIMDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAK  154 (318)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCE
T ss_pred             CEEEEEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChheEEEcCCCCEEEeecCcce
Confidence            99999999999999999998764 68999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....      ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+..    .. .........     
T Consensus       155 ~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~----~~-~~~~~i~~~-----  218 (318)
T 1fot_A          155 YVPD------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN----TM-KTYEKILNA-----  218 (318)
T ss_dssp             ECSS------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS----HH-HHHHHHHHC-----
T ss_pred             ecCC------ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC----HH-HHHHHHHhC-----
Confidence            6432      2334679999999999999999999999999999999999999997531    11 111111100     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                         ....+..+   ..++.+++.+|++.||++||     ++.|+++|
T Consensus       219 ---~~~~p~~~---~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h  259 (318)
T 1fot_A          219 ---ELRFPPFF---NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  259 (318)
T ss_dssp             ---CCCCCTTS---CHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ---CCCCCCCC---CHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence               01112222   24566778899999999999     89999976

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5e-39  Score=363.26  Aligned_cols=346  Identities=27%  Similarity=0.364  Sum_probs=268.2

Q ss_pred             CCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCC
Q 003199           15 PMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSL   94 (840)
Q Consensus        15 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   94 (840)
                      .+++|+.|++++|.++ .+|. +..+++|++|+|++|   .+..+++  +..+++|++|++++|.+.+..+  ++++++|
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n---~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  114 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN---QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL  114 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSS---CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             HhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCC---ccCCchh--hhccccCCEEECCCCccccChh--hcCCCCC
Confidence            3678899999999988 5564 788899999999999   5566654  8888999999999999886544  8889999


Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeec
Q 003199           95 TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN  174 (840)
Q Consensus        95 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  174 (840)
                      ++|+|++|.+++. +. +..+++|++|++++|+  ...++ .+..+++|++|+++ |.+.+..  .+..+++|+.|++++
T Consensus       115 ~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~--l~~~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~  186 (466)
T 1o6v_A          115 TGLTLFNNQITDI-DP-LKNLTNLNRLELSSNT--ISDIS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISS  186 (466)
T ss_dssp             CEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEE--ECCCG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCS
T ss_pred             CEEECCCCCCCCC-hH-HcCCCCCCEEECCCCc--cCCCh-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcC
Confidence            9999999998854 33 8889999999999887  22343 48888899999986 4555332  388889999999999


Q ss_pred             cccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCC
Q 003199          175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP  254 (840)
Q Consensus       175 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  254 (840)
                      |.+.+.  ..+..+++|++|++++|++.+..+  +..+++|+.|++++|++++.  ..+..+++|+.|++++|.+.+..+
T Consensus       187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  260 (466)
T 1o6v_A          187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP  260 (466)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence            988754  347888899999999999886544  67788899999999988754  356777788888888888776554


Q ss_pred             cccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCc
Q 003199          255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAIS  334 (840)
Q Consensus       255 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  334 (840)
                        +..+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  ++.+++|+.|+|++|++++..|  +..+++
T Consensus       261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~  332 (466)
T 1o6v_A          261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK  332 (466)
T ss_dssp             --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc
Confidence              7777888888888888874433  6777888888888888876544  6777888888888888876655  667778


Q ss_pred             ccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccc
Q 003199          335 LVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG  395 (840)
Q Consensus       335 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  395 (840)
                      |+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            88888888888754  457777888888888888877666  7777888888888888875

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=8.2e-41  Score=355.75  Aligned_cols=273  Identities=25%  Similarity=0.311  Sum_probs=205.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      +.|+..+.||+|+||.||+|.+     .+++.||||++.....         ....+.+.+|+++++.++||||++++++
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~h~~i~~~~~~   91 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG---------GNHIADLKKEIEILRNLYHENIVKYKGI   91 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC--------------CCHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEeccccc---------chhHHHHHHHHHHHHhCCCCCeeeeeeE
Confidence            3477889999999999999973     4689999999854321         1234678899999999999999999999


Q ss_pred             EecC--ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          601 FSSL--YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       601 ~~~~--~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      +...  ...++||||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+
T Consensus        92 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~  168 (302)
T 4e5w_A           92 CTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIG  168 (302)
T ss_dssp             EEC---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEEC
T ss_pred             EecCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEEC
Confidence            9876  66799999999999999997666679999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++................||..|+|||.+.+..++.++||||+|+++|||++|+.|+...................
T Consensus       169 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~  248 (302)
T 4e5w_A          169 DFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMT  248 (302)
T ss_dssp             CCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGH
T ss_pred             cccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccC
Confidence            99999876543222233445678889999999998899999999999999999999999864321000000000000000


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ..............+........+.+++.+||+.||.+|||+.++++.|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  300 (302)
T 4e5w_A          249 VTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL  300 (302)
T ss_dssp             HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            0000000111111111122345677888899999999999999999999864

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.1e-40  Score=349.09  Aligned_cols=249  Identities=21%  Similarity=0.257  Sum_probs=194.3

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      ..++|+..+.||+|+||+||+|... +|+.||||++......        ......+..|+..+.++ .||||+++++++
T Consensus        55 ~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~  126 (311)
T 3p1a_A           55 FQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRG--------PKDRARKLAEVGSHEKVGQHPCCVRLEQAW  126 (311)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCS--------HHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccC--------hHHHHHHHHHHHHHHHhcCCCcEEEEEEEE
Confidence            3468999999999999999999665 7999999987443211        12233445566655555 899999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+....++||||+ +++|.+++......++|..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       127 ~~~~~~~lv~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG  202 (311)
T 3p1a_A          127 EEGGILYLQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFG  202 (311)
T ss_dssp             EETTEEEEEEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCT
T ss_pred             EeCCEEEEEEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEccce
Confidence            9999999999999 779999988776679999999999999999999999   899999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ++.....    ........||+.|+|||++.+ .++.++|||||||++|||++|..|+...       ..|.....    
T Consensus       203 ~a~~~~~----~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~-------~~~~~~~~----  266 (311)
T 3p1a_A          203 LLVELGT----AGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG-------EGWQQLRQ----  266 (311)
T ss_dssp             TCEECC----------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH-------HHHHHHTT----
T ss_pred             eeeeccc----CCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc-------cHHHHHhc----
Confidence            9876532    223345569999999998876 7899999999999999999997766431       01111100    


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         .........   .....+.+++.+|++.||++|||+.|++++
T Consensus       267 ---~~~~~~~~~---~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  305 (311)
T 3p1a_A          267 ---GYLPPEFTA---GLSSELRSVLVMMLEPDPKLRATAEALLAL  305 (311)
T ss_dssp             ---TCCCHHHHT---TSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ---cCCCccccc---CCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence               000011111   123567788889999999999999999975

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=6.4e-40  Score=346.92  Aligned_cols=266  Identities=23%  Similarity=0.297  Sum_probs=200.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|... +|+.||||++......        ......+.+|+.++++++||||+++++++.+.
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   73 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD--------EGVPSSALREICLLKELKHKNIVRLHDVLHSD   73 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS--------TTHHHHHHHHHHHHTTCCCTTBCCEEEEEEET
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCc--------CCcchHHHHHHHHHhcCCCCCEeeEEeEEEeC
Confidence            46888899999999999999664 7899999998544321        22346678999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++ ++.+.+......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus        74 ~~~~lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~  149 (292)
T 3o0g_A           74 KKLTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLAR  149 (292)
T ss_dssp             TEEEEEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccce
Confidence            999999999975 6766666655579999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCC-CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc-cccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD-TKEG  762 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~  762 (840)
                      ....   .........||+.|+|||++.+.. ++.++||||+||++|||++|..||................... ....
T Consensus       150 ~~~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~  226 (292)
T 3o0g_A          150 AFGI---PVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQ  226 (292)
T ss_dssp             ECCS---CCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTT
T ss_pred             ecCC---ccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhh
Confidence            6532   222334567899999999987765 7999999999999999999888864322111111111100000 0000


Q ss_pred             hhhh---c----------ccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 IMEV---L----------DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~~~~---~----------~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....   .          ..............+.+++.+|++.||++|||++|++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  283 (292)
T 3o0g_A          227 WPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             CTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence            0000   0          000011112234566788889999999999999999986

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=8.6e-40  Score=366.67  Aligned_cols=250  Identities=26%  Similarity=0.348  Sum_probs=201.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|.+. |+.||||++....            ..+.|.+|+.++++++||||+++++++.+..
T Consensus       193 ~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~------------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~  259 (450)
T 1k9a_A          193 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA------------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK  259 (450)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT------------TSHHHHHHHHHHHTCCCTTBCCEEEEEECTT
T ss_pred             HHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch------------HHHHHHHHHHHHHhccCCCEEEEEEEEEcCC
Confidence            46778899999999999999887 7899999985332            1356889999999999999999999987655


Q ss_pred             -cceEEEeecCCCChHHHhhcCCC-CCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          606 -CNLLVYEYMPNGNLWDALHKGLV-HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       606 -~~~lV~e~~~~gsL~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                       ..++||||+++|+|.+++..... .+++..+..++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||++
T Consensus       260 ~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a  336 (450)
T 1k9a_A          260 GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLT  336 (450)
T ss_dssp             SCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred             CceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCc
Confidence             78999999999999999987543 37999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +....      ......+++.|+|||.+.+..++.++|||||||++|||++ |+.||......  .....+   ..    
T Consensus       337 ~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~--~~~~~i---~~----  401 (450)
T 1k9a_A          337 KEASS------TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRV---EK----  401 (450)
T ss_dssp             EECC------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTT--THHHHH---HT----
T ss_pred             ccccc------cccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHH---Hc----
Confidence            75321      1223357889999999999999999999999999999998 99999754211  111110   00    


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                         -.....+   ......+.+++.+||+.||++|||+.++++.|+++..
T Consensus       402 ---~~~~~~p---~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~  445 (450)
T 1k9a_A          402 ---GYKMDAP---DGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRT  445 (450)
T ss_dssp             ---TCCCCCC---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ---CCCCCCC---CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence               0001111   2233567778889999999999999999999987654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=2.7e-40  Score=358.77  Aligned_cols=256  Identities=23%  Similarity=0.264  Sum_probs=202.6

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +.+.|+..+.||+|+||+||+|.. .+|+.||||++........     .....+.+.+|+.+++.++||||+++++++.
T Consensus        22 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-----~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~   96 (351)
T 3c0i_A           22 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSS-----PGLSTEDLKREASICHMLKHPHIVELLETYS   96 (351)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTS-----SSCCHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             cccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhcccc-----ccchHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            456799999999999999999965 5799999999843321100     0112467889999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC---Ce
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ---PK  676 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~k  676 (840)
                      +....++||||+++|+|.+.+...   ...+++..+..++.||+.||+|||+   ++|+||||||+||+++.++.   +|
T Consensus        97 ~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivHrDlkp~NIl~~~~~~~~~vk  173 (351)
T 3c0i_A           97 SDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPVK  173 (351)
T ss_dssp             ETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECSSSTTCCEE
T ss_pred             eCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChHHeEEecCCCCCcEE
Confidence            999999999999999998887643   2358999999999999999999999   99999999999999987654   99


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |+|||+++.....   ........||+.|+|||++.+..++.++|||||||++|||++|+.||....   ...  +..  
T Consensus       174 l~Dfg~a~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~---~~~--~~~--  243 (351)
T 3c0i_A          174 LGGFGVAIQLGES---GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK---ERL--FEG--  243 (351)
T ss_dssp             ECCCTTCEECCTT---SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH---HHH--HHH--
T ss_pred             EecCcceeEecCC---CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH---HHH--HHH--
Confidence            9999999776431   222345679999999999999899999999999999999999999997521   110  100  


Q ss_pred             hccccchhhhcccccCC---CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          757 VDTKEGIMEVLDKKLSG---SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                               +.......   .+......+.+++.+|++.||++|||+.|++++
T Consensus       244 ---------i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  287 (351)
T 3c0i_A          244 ---------IIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNH  287 (351)
T ss_dssp             ---------HHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ---------HHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence                     00001100   001123567788889999999999999999875

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=5.1e-40  Score=353.07  Aligned_cols=272  Identities=22%  Similarity=0.304  Sum_probs=214.7

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      .++|+..+.||+|+||.||+|...      +++.||||++....         .......+.+|+.+++.++||||++++
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~i~~~~   94 (322)
T 1p4o_A           24 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---------SMRERIEFLNEASVMKEFNCHHVVRLL   94 (322)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---------CHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred             hhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc---------CHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence            357888999999999999998654      36889999985322         123345788999999999999999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC---------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL---------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL  669 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill  669 (840)
                      +++.+....++||||+++|+|.+++....         ..+++..+..++.|++.||+|||+   ++|+||||||+||++
T Consensus        95 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~NIli  171 (322)
T 1p4o_A           95 GVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMV  171 (322)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEE
T ss_pred             EEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCCccCCCccceEEE
Confidence            99999999999999999999999987531         357899999999999999999999   999999999999999


Q ss_pred             cCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcc
Q 003199          670 DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKN  748 (840)
Q Consensus       670 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~  748 (840)
                      +.++.+||+|||+++...... .........+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.....  ..
T Consensus       172 ~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~  248 (322)
T 1p4o_A          172 AEDFTVKIGDFGMTRDIYETD-YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN--EQ  248 (322)
T ss_dssp             CTTCCEEECCTTCCCGGGGGG-CEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH--HH
T ss_pred             cCCCeEEECcCcccccccccc-ccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH--HH
Confidence            999999999999998764321 1122234467889999999998899999999999999999999 8999875310  11


Q ss_pred             hhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCCCCCCCCc
Q 003199          749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKFPNKS  824 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~~~~~~~~  824 (840)
                      .   ..          .+...............+.+++.+|++.||++|||+.|++++|++.....+...+++..+
T Consensus       249 ~---~~----------~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~~~~~~~~~~~  311 (322)
T 1p4o_A          249 V---LR----------FVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSE  311 (322)
T ss_dssp             H---HH----------HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHHHCSTTST
T ss_pred             H---HH----------HHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccCCccccccccc
Confidence            1   00          011111111112233456778889999999999999999999998877766665554443

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1e-39  Score=346.68  Aligned_cols=264  Identities=17%  Similarity=0.191  Sum_probs=207.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  603 (840)
                      ++|...+.||+|+||.||+|.. .+|+.||||++.....            .+.+.+|+.+++.+ .|+|++++++++.+
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------------~~~~~~e~~~~~~l~~~~~i~~~~~~~~~   77 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD------------APQLRDEYRTYKLLAGCTGIPNVYYFGQE   77 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT------------SCCHHHHHHHHHHTTTCTTCCCEEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc------------cHHHHHHHHHHHHHhcCCCCCeEEeecCC
Confidence            4688889999999999999964 6799999998853321            12467899999999 79999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC-----Ceee
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ-----PKVA  678 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~-----~kl~  678 (840)
                      ....++||||+ +++|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.     +||+
T Consensus        78 ~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~  153 (298)
T 1csn_A           78 GLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVV  153 (298)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             CceeEEEEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEE
Confidence            99999999999 999999998766679999999999999999999999   99999999999999987776     9999


Q ss_pred             cccchhhhhccCCCC----cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          679 DFGIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      |||+++.........    .......||+.|+|||.+.+..++.++||||||+++|||++|+.||.......... ....
T Consensus       154 Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~-~~~~  232 (298)
T 1csn_A          154 DFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ-KYER  232 (298)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHH-HHHH
T ss_pred             ECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHH-HHHH
Confidence            999998765422211    12345679999999999999999999999999999999999999997642221111 1110


Q ss_pred             hhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      ......    .........   .....+.+++.+||+.||++||+++++++.|+++...
T Consensus       233 ~~~~~~----~~~~~~~~~---~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~  284 (298)
T 1csn_A          233 IGEKKQ----STPLRELCA---GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  284 (298)
T ss_dssp             HHHHHH----HSCHHHHTT---TSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHhhcc----CccHHHHHh---hCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence            000000    000000111   1234677788899999999999999999999876543

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=7.9e-40  Score=353.26  Aligned_cols=257  Identities=21%  Similarity=0.284  Sum_probs=202.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  603 (840)
                      ++|+..+.||+|+||.||+|..+ +|+.||||++......       .....+.+.+|+.++.++ +||||+++++++.+
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~-------~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~   81 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVN-------DDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT   81 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSC-------SHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhc-------chHHHHHHHHHHHHHHhcCCCCccCeEEEEEEe
Confidence            46888899999999999999765 6899999998643311       123356688899999988 89999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++|+||||||+||+++.++.+||+|||++
T Consensus        82 ~~~~~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFG~a  157 (345)
T 3a8x_A           82 ESRLFFVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMC  157 (345)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCGGGC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEEecccc
Confidence            999999999999999999998754 68999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc---hhhhhhhhhccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN---IIYWVSIKVDTK  760 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~---~~~~~~~~~~~~  760 (840)
                      +....   .........||+.|+|||++.+..++.++|||||||++|||++|+.||.........   ........... 
T Consensus       158 ~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~-  233 (345)
T 3a8x_A          158 KEGLR---PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE-  233 (345)
T ss_dssp             BCSCC---TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHH-
T ss_pred             ccccC---CCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHc-
Confidence            75422   122344568999999999999999999999999999999999999999753211100   00000000000 


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM------NEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~------~evl~~  806 (840)
                            ....++..   ....+.+++.+|++.||++||++      .|+++|
T Consensus       234 ------~~~~~p~~---~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h  276 (345)
T 3a8x_A          234 ------KQIRIPRS---LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  276 (345)
T ss_dssp             ------CCCCCCTT---SCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred             ------CCCCCCCC---CCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence                  00112222   23456678889999999999995      777766

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=6e-40  Score=368.14  Aligned_cols=256  Identities=29%  Similarity=0.401  Sum_probs=200.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.|+..+.||+|+||.||+|..+++..||||++.....           ..+.|.+|++++++++||||+++++++.+ .
T Consensus       184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~  251 (452)
T 1fmk_A          184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----------SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E  251 (452)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-----------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-----------CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-C
Confidence            46778889999999999999998888999999854321           13568899999999999999999999876 6


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++|+|.+++... ...+++.++..++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+++
T Consensus       252 ~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  328 (452)
T 1fmk_A          252 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  328 (452)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             ceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECCCccce
Confidence            789999999999999999753 2358999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  .........+++.|+|||.+.+..++.++||||||+++|||++ |+.||.+...  ......           
T Consensus       329 ~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~~~~~-----------  393 (452)
T 1fmk_A          329 LIEDN--EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQ-----------  393 (452)
T ss_dssp             ----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHH-----------
T ss_pred             ecCCC--ceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHH-----------
Confidence            76432  1222234457789999999998899999999999999999999 9999975311  111000           


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                        +......+........+.+++.+||+.||++|||+.++++.|+++...
T Consensus       394 --i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~  441 (452)
T 1fmk_A          394 --VERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  441 (452)
T ss_dssp             --HHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             --HHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence              000000111122334677788899999999999999999999987543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=4.2e-40  Score=373.27  Aligned_cols=255  Identities=25%  Similarity=0.309  Sum_probs=206.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|.+. ++..||||++.....           ..+.|.+|+.++++++||||++++++|...
T Consensus       220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-----------~~~~~~~E~~~l~~l~hpniv~l~~~~~~~  288 (495)
T 1opk_A          220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-----------EVEEFLKEAAVMKEIKHPNLVQLLGVCTRE  288 (495)
T ss_dssp             GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-----------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-----------chHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            45778889999999999999776 488999999854321           145789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+++|+|.+++... ...+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||++
T Consensus       289 ~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a  365 (495)
T 1opk_A          289 PPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLS  365 (495)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTTCE
T ss_pred             CcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEECCCCcEEEeecccc
Confidence            9999999999999999999864 3468999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +....  ..........+++.|+|||++.+..++.++|||||||++|||++ |+.||.....  .......         
T Consensus       366 ~~~~~--~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~--~~~~~~~---------  432 (495)
T 1opk_A          366 RLMTG--DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL--SQVYELL---------  432 (495)
T ss_dssp             ECCTT--CCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHHHHH---------
T ss_pred             eeccC--CceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHHH---------
Confidence            87633  11122233456789999999998899999999999999999999 9999975321  1111100         


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                       .........   ......+.+++.+||+.||++|||+.++++.|+.+.
T Consensus       433 -~~~~~~~~~---~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~  477 (495)
T 1opk_A          433 -EKDYRMERP---EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF  477 (495)
T ss_dssp             -HTTCCCCCC---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             -HcCCCCCCC---CCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence             000011111   123356677888999999999999999999999875

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=351.75  Aligned_cols=254  Identities=22%  Similarity=0.341  Sum_probs=199.6

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ..++|+..+.||+|+||.||+|... +|+.||||++.....         ....+.+.+|++++++++||||+++++++.
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~hpniv~~~~~~~   74 (332)
T 3qd2_B            4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR---------ELAREKVMREVKALAKLEHPGIVRYFNAWL   74 (332)
T ss_dssp             HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST---------TTHHHHHHHHHHHHTSCCCTTBCCEEEEEE
T ss_pred             hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc---------hhHHHHHHHHHHHHHhCCCCCEeeEEEEEE
Confidence            4678999999999999999999765 899999999854321         223567899999999999999999999985


Q ss_pred             cCc---------------------------------------------------------cceEEEeecCCCChHHHhhc
Q 003199          603 SLY---------------------------------------------------------CNLLVYEYMPNGNLWDALHK  625 (840)
Q Consensus       603 ~~~---------------------------------------------------------~~~lV~e~~~~gsL~~~l~~  625 (840)
                      +..                                                         ..++||||+++|+|.+++..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~  154 (332)
T 3qd2_B           75 ETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNR  154 (332)
T ss_dssp             ECCSCHHHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHT
T ss_pred             EeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhc
Confidence            543                                                         27899999999999999987


Q ss_pred             CC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCC---------Cc
Q 003199          626 GL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK---------DS  694 (840)
Q Consensus       626 ~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~---------~~  694 (840)
                      ..  ...++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++........         ..
T Consensus       155 ~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~  231 (332)
T 3qd2_B          155 RCSLEDREHGVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYA  231 (332)
T ss_dssp             CCSGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------
T ss_pred             ccCccchhhHHHHHHHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccc
Confidence            53  235667789999999999999999   99999999999999999999999999999876432111         11


Q ss_pred             ceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCC
Q 003199          695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGS  774 (840)
Q Consensus       695 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  774 (840)
                      ......||+.|+|||++.+..++.++||||||+++|||++|..|+...          ..       ..........+..
T Consensus       232 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~----------~~-------~~~~~~~~~~~~~  294 (332)
T 3qd2_B          232 THTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER----------VR-------IITDVRNLKFPLL  294 (332)
T ss_dssp             CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH----------HH-------HHHHHHTTCCCHH
T ss_pred             cccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH----------HH-------HHHHhhccCCCcc
Confidence            223457999999999999999999999999999999999987764310          00       0111111122222


Q ss_pred             cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          775 FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       775 ~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .......+.+++.+|++.||++|||+.|++++
T Consensus       295 ~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  326 (332)
T 3qd2_B          295 FTQKYPQEHMMVQDMLSPSPTERPEATDIIEN  326 (332)
T ss_dssp             HHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred             cccCChhHHHHHHHHccCCCCcCCCHHHHhhc
Confidence            33445667889999999999999999999975

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=6.3e-40  Score=351.04  Aligned_cols=257  Identities=24%  Similarity=0.348  Sum_probs=205.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|...+.||+|+||.||+|..      .+++.||||++....         .....+.+.+|++++++++||||+++++
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~hp~iv~~~~   93 (314)
T 2ivs_A           23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA---------SPSELRDLLSEFNVLKQVNHPHVIKLYG   93 (314)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC---------CHHHHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC---------CHHHHHHHHHHHHHHhhCCCCceeeEEE
Confidence            5678889999999999999964      345899999985322         1233567899999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC-----------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL-----------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSP  656 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~  656 (840)
                      ++.+....++||||+++|+|.+++....                       ..+++.++..++.|++.||+|||+   ++
T Consensus        94 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~  170 (314)
T 2ivs_A           94 ACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MK  170 (314)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             EEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH---CC
Confidence            9999999999999999999999998643                       237899999999999999999999   99


Q ss_pred             eEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-C
Q 003199          657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-G  735 (840)
Q Consensus       657 ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g  735 (840)
                      |+||||||+||+++.++.+||+|||+++...... .........+|+.|+|||.+.+..++.++||||||+++|||++ |
T Consensus       171 ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g  249 (314)
T 2ivs_A          171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEED-SYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLG  249 (314)
T ss_dssp             EECCCCSGGGEEEETTTEEEECCCTTCEECTTTS-CEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTS
T ss_pred             CcccccchheEEEcCCCCEEEccccccccccccc-cceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999997664321 1122334567889999999988889999999999999999999 9


Q ss_pred             CCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          736 RKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       736 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      +.||.+...  ........          .........   .....+.+++.+|++.||++||++.|++++|+++
T Consensus       250 ~~p~~~~~~--~~~~~~~~----------~~~~~~~~~---~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~  309 (314)
T 2ivs_A          250 GNPYPGIPP--ERLFNLLK----------TGHRMERPD---NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM  309 (314)
T ss_dssp             CCSSTTCCG--GGHHHHHH----------TTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCCCCCCH--HHHHHHhh----------cCCcCCCCc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            999975321  11111000          000011111   2334577788899999999999999999999875

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=6e-40  Score=343.22  Aligned_cols=254  Identities=29%  Similarity=0.419  Sum_probs=192.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|... |+.||||++......      ......+.+.+|+++++.++||||+++++++.+..
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~------~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   79 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDE------DISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEP   79 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC-
T ss_pred             hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcc------cHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            46778889999999999999876 899999998543321      11233567889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC---eEecCCCCCCEEEcC--------CCC
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSP---IIHRDIKSTNILLDV--------NYQ  674 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~---ivH~Dlk~~Nill~~--------~~~  674 (840)
                      ..++||||+++++|.+++...  .+++..+..++.|++.||+|||+   ++   |+||||||+||+++.        ++.
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH~---~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~  154 (271)
T 3dtc_A           80 NLCLVMEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYLHD---EAIVPIIHRDLKSSNILILQKVENGDLSNKI  154 (271)
T ss_dssp             -CEEEEECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHHH---SSSSCCCCSCCSGGGEEESSCCSSSCCSSCC
T ss_pred             ceEEEEEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCCCceeecCCchHHEEEecccccccccCcc
Confidence            999999999999999999754  68999999999999999999999   77   999999999999986        678


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +||+|||+++.....     ......||+.|+|||.+.+..++.++||||||+++|||++|+.||.....   ....+. 
T Consensus       155 ~kl~Dfg~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~~~~~-  225 (271)
T 3dtc_A          155 LKITDFGLAREWHRT-----TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG---LAVAYG-  225 (271)
T ss_dssp             EEECCCCC------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCH---HHHHHH-
T ss_pred             eEEccCCcccccccc-----cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHh-
Confidence            999999999865431     22245789999999999988999999999999999999999999975311   000000 


Q ss_pred             hhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ...       .........   .....+.+++.+|++.||++|||+.|++++|+++
T Consensus       226 ~~~-------~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          226 VAM-------NKLALPIPS---TCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             HHT-------SCCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             hhc-------CCCCCCCCc---ccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            000       000111112   2234567788899999999999999999999864

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.8e-40  Score=347.73  Aligned_cols=265  Identities=20%  Similarity=0.258  Sum_probs=208.1

Q ss_pred             hcCccC-eeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          527 AMTEKN-KVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       527 ~~~~~~-~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +|...+ .||+|+||.||+|...   ++..||||++....         .....+.+.+|++++++++||||+++++++ 
T Consensus        10 ~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-   79 (287)
T 1u59_A           10 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---------EKADTEEMMREAQIMHQLDNPYIVRLIGVC-   79 (287)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---------CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-
T ss_pred             HhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc---------chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-
Confidence            444554 8999999999999653   57889999985432         123456789999999999999999999999 


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      ..+..++||||+++++|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~  156 (287)
T 1u59_A           80 QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGL  156 (287)
T ss_dssp             ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTT
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCchheEEEcCCCCEEECcccc
Confidence            4556899999999999999998766679999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ++................+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.....  .......   ..   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~i---~~---  228 (287)
T 1u59_A          157 SKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFI---EQ---  228 (287)
T ss_dssp             CEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT--HHHHHHH---HT---
T ss_pred             eeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHH---hc---
Confidence            9876432222222334557899999999988889999999999999999998 9999975321  1111110   00   


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCCCC
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCK  819 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~~~  819 (840)
                          ........   .....+.+++.+||+.||++||++.+++++|+.+.........
T Consensus       229 ----~~~~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~  279 (287)
T 1u59_A          229 ----GKRMECPP---ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVE  279 (287)
T ss_dssp             ----TCCCCCCT---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             ----CCcCCCCC---CcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCccc
Confidence                00011112   2335677788899999999999999999999876554444433

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=4.4e-40  Score=353.66  Aligned_cols=263  Identities=22%  Similarity=0.276  Sum_probs=192.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC-Cc---EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS-GE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~-~~---~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|...+.||+|+||.||+|.... ++   .||||++......        ....+.+.+|++++++++||||+++++++
T Consensus        23 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   94 (323)
T 3qup_A           23 QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIA--------SSDIEEFLREAACMKEFDHPHVAKLVGVS   94 (323)
T ss_dssp             --CEEEEEEEEETTEEEEEEEC-------CEEEEEEC--------------CHHHHHHHHHHHHHTTCCCTTBCCCCEEE
T ss_pred             hHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccC--------HHHHHHHHHHHHHHHHCCCCceehhhcee
Confidence            468888999999999999997653 32   7999998543211        22356789999999999999999999999


Q ss_pred             ecCccc------eEEEeecCCCChHHHhhcCC-----CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc
Q 003199          602 SSLYCN------LLVYEYMPNGNLWDALHKGL-----VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD  670 (840)
Q Consensus       602 ~~~~~~------~lV~e~~~~gsL~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~  670 (840)
                      ......      ++||||+++|+|.+++....     ..+++.++..++.|++.||+|||+   ++|+||||||+||+++
T Consensus        95 ~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~Dikp~NIli~  171 (323)
T 3qup_A           95 LRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS---RNFIHRDLAARNCMLA  171 (323)
T ss_dssp             ECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEC
T ss_pred             eccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHc---CCcccCCCCcceEEEc
Confidence            877655      89999999999999986432     258999999999999999999999   9999999999999999


Q ss_pred             CCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcch
Q 003199          671 VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNI  749 (840)
Q Consensus       671 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~  749 (840)
                      .++.+||+|||+++...... .........+++.|+|||.+.+..++.++|||||||++|||++ |+.||.+...  ...
T Consensus       172 ~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~--~~~  248 (323)
T 3qup_A          172 EDMTVCVADFGLSRKIYSGD-YYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN--AEI  248 (323)
T ss_dssp             TTSCEEECCCCC------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGH
T ss_pred             CCCCEEEeeccccccccccc-cccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh--HHH
Confidence            99999999999998764321 1222334557889999999999999999999999999999999 9999975321  111


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                      ..             .................+.+++.+|++.||++|||+.++++.|+++-....
T Consensus       249 ~~-------------~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~  301 (323)
T 3qup_A          249 YN-------------YLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLS  301 (323)
T ss_dssp             HH-------------HHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred             HH-------------HHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhh
Confidence            10             011111111112233467788889999999999999999999997655544

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=5.6e-40  Score=358.47  Aligned_cols=248  Identities=24%  Similarity=0.327  Sum_probs=194.7

Q ss_pred             ccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccce
Q 003199          530 EKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  608 (840)
                      ..+.||+|+||.||+|.. .+|+.||||++....          ....+.+.+|++++++++||||+++++++.+....+
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  162 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG----------MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIV  162 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCS----------HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc----------cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEE
Confidence            356899999999999965 579999999985432          123467889999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE--cCCCCCeeecccchhhh
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL--DVNYQPKVADFGIAKVL  686 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill--~~~~~~kl~Dfg~a~~~  686 (840)
                      +||||+++|+|.+++......+++..+..++.|++.||+|||+   .+|+||||||+|||+  +.++.+||+|||+++..
T Consensus       163 lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~  239 (373)
T 2x4f_A          163 LVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRY  239 (373)
T ss_dssp             EEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEEC
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCceec
Confidence            9999999999999997765579999999999999999999999   999999999999999  56778999999999876


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV  766 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (840)
                      ..    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  ..  .... .......    
T Consensus       240 ~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~--~~--~~~~-i~~~~~~----  306 (373)
T 2x4f_A          240 KP----REKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND--AE--TLNN-ILACRWD----  306 (373)
T ss_dssp             CT----TCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH--HH--HHHH-HHHTCCC----
T ss_pred             CC----ccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH--HH--HHHH-HHhccCC----
Confidence            33    2223345799999999999888899999999999999999999999975311  10  0000 0000000    


Q ss_pred             cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       767 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .   ....+......+.+++.+|++.||.+|||+.|++++
T Consensus       307 ~---~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~h  343 (373)
T 2x4f_A          307 L---EDEEFQDISEEAKEFISKLLIKEKSWRISASEALKH  343 (373)
T ss_dssp             S---CSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             C---ChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0   011112234567778889999999999999999985

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=7.1e-40  Score=354.14  Aligned_cols=249  Identities=24%  Similarity=0.300  Sum_probs=203.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|... +|+.||||++.....       ......+.+.+|+.+++.++||||+++++++.+.
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  113 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKV-------VKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN  113 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHh-------ccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            56888899999999999999665 799999999844321       1122346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus       114 ~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFg~a~  189 (350)
T 1rdq_E          114 SNLYMVMEYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAK  189 (350)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCccceEEECCCCCEEEcccccce
Confidence            99999999999999999998754 68999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....      ......||+.|+|||++.+..++.++|||||||++|||++|+.||....     ...........     
T Consensus       190 ~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-----~~~~~~~i~~~-----  253 (350)
T 1rdq_E          190 RVKG------RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ-----PIQIYEKIVSG-----  253 (350)
T ss_dssp             ECSS------CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHC-----
T ss_pred             eccC------CcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC-----HHHHHHHHHcC-----
Confidence            6532      2234679999999999999999999999999999999999999997531     11111110100     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHHh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQLL  807 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~L  807 (840)
                         ...++..+   ...+.+++.+|++.||++||+     ++|++++-
T Consensus       254 ---~~~~p~~~---~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~  295 (350)
T 1rdq_E          254 ---KVRFPSHF---SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHK  295 (350)
T ss_dssp             ---CCCCCTTC---CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSG
T ss_pred             ---CCCCCCCC---CHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCc
Confidence               01112222   345667888999999999998     89998764

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=2.5e-40  Score=354.39  Aligned_cols=269  Identities=26%  Similarity=0.347  Sum_probs=204.8

Q ss_pred             cCccCeeeccCCcEEEEEEeC-----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      |+..+.||+|+||+||+|.+.     +|+.||||++....         .....+.+.+|++++++++||||+++++++.
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  103 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA---------GPQHRSGWKQEIDILRTLYHEHIIKYKGCCE  103 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC---------CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc---------ChHHHHHHHHHHHHHHhCCCcchhhEEEEEe
Confidence            378889999999999988653     68899999985432         1234567899999999999999999999998


Q ss_pred             cC--ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          603 SL--YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       603 ~~--~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +.  ...++||||+++|+|.+++...  .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus       104 ~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~i~~~l~~~l~~LH~---~~ivH~Dikp~Nil~~~~~~~kl~Df  178 (318)
T 3lxp_A          104 DAGAASLQLVMEYVPLGSLRDYLPRH--SIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDF  178 (318)
T ss_dssp             ETTTTEEEEEECCCTTCBHHHHGGGS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCG
T ss_pred             cCCCceEEEEEecccCCcHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEEcCCCCEEECCc
Confidence            74  5678999999999999999875  48999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |+++................+|+.|+|||.+.+..++.++||||||+++|||++|+.||............+........
T Consensus       179 g~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~  258 (318)
T 3lxp_A          179 GLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVL  258 (318)
T ss_dssp             GGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHH
T ss_pred             cccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHH
Confidence            99987644222222334556888999999999889999999999999999999999998642110000000000000000


Q ss_pred             cchhhhcccc-cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          761 EGIMEVLDKK-LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       761 ~~~~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                       .....+... ...........+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       259 -~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~  309 (318)
T 3lxp_A          259 -RLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVH  309 (318)
T ss_dssp             -HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -HHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence             011111111 11112233456778888999999999999999999998764

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.1e-39  Score=344.44  Aligned_cols=262  Identities=30%  Similarity=0.409  Sum_probs=194.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .+|+..+.||+|+||.||+|...  ..||||++.....        .....+.+.+|++++++++||||+++++++ ...
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~   92 (289)
T 3og7_A           24 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAP--------TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAP   92 (289)
T ss_dssp             TSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSC--------CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSS
T ss_pred             cceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCC--------CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCC
Confidence            45778899999999999999765  3599999854332        133457789999999999999999999966 455


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++......+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.
T Consensus        93 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~  169 (289)
T 3og7_A           93 QLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATE  169 (289)
T ss_dssp             SCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC----
T ss_pred             ccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEEccceeccc
Confidence            6799999999999999998776679999999999999999999999   9999999999999999999999999999976


Q ss_pred             hhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ..... .........||+.|+|||.+.   +..++.++||||||+++|||++|+.||...... .......   ..    
T Consensus       170 ~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~---~~----  240 (289)
T 3og7_A          170 KSRWS-GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR-DQIIEMV---GR----  240 (289)
T ss_dssp             ---------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH-HHHHHHH---HH----
T ss_pred             ccccc-ccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH-HHHHHHh---cc----
Confidence            54321 122334567999999999886   567889999999999999999999999753211 1111100   00    


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                        .................+.+++.+|++.||++|||+.++++.|+++..
T Consensus       241 --~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          241 --GSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             --TSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             --cccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence              001111111112334567788889999999999999999999998753

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=4e-40  Score=353.86  Aligned_cols=258  Identities=24%  Similarity=0.330  Sum_probs=196.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcE----EEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEV----VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|...+.||+|+||.||+|... +++.    ||+|.+.....         ....+.+.+|+.++++++||||++++++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~---------~~~~~~~~~E~~~l~~l~hp~iv~~~~~   85 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---------PKANKEILDEAYVMASVDNPHVCRLLGI   85 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSS---------CCCHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccC---------HHHHHHHHHHHHHHHhCCCCCeeEEEEE
Confidence            46788899999999999999654 5654    46666532221         1234678899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +.... .++|+||+.+|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+||
T Consensus        86 ~~~~~-~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kL~Df  161 (327)
T 3lzb_A           86 CLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDF  161 (327)
T ss_dssp             EESSS-EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCT
T ss_pred             EecCC-ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh---CCCcCCCCCHHHEEEcCCCCEEEccC
Confidence            98764 789999999999999998876679999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+++...... .........+|+.|+|||.+.+..++.++|||||||++|||++ |+.||.....  ........     
T Consensus       162 G~a~~~~~~~-~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~--~~~~~~~~-----  233 (327)
T 3lzb_A          162 GLAKLLGAEE-KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILE-----  233 (327)
T ss_dssp             TC-----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHH-----
T ss_pred             cceeEccCcc-ccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHH-----
Confidence            9998764321 2222334557889999999999999999999999999999999 9999975321  11111100     


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                              ..............+.+++.+||+.||.+||++.|+++.|+++..
T Consensus       234 --------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  278 (327)
T 3lzb_A          234 --------KGERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             --------TTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred             --------cCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence                    000011111223456778889999999999999999999987654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-39  Score=353.83  Aligned_cols=262  Identities=23%  Similarity=0.308  Sum_probs=206.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|..      .++..||||++.....         ....+.+.+|+.+++++ .||||++++
T Consensus        45 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~~hp~iv~~~  115 (344)
T 1rjb_A           45 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD---------SSEREALMSELKMMTQLGSHENIVNLL  115 (344)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------------CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             HHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC---------HHHHHHHHHHHHHHHhhcCCCCeeeEE
Confidence            6788899999999999999975      2456899999853321         12246788999999999 899999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCCC----------------------CCChHHHHHHHHHHHHHHHHHhhcCCCC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGLV----------------------HLDWPTRHKIAFGVAQGLAYLHHGLLSP  656 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~  656 (840)
                      +++......++||||+++|+|.+++.....                      .+++..+..++.|++.||+|||+   ++
T Consensus       116 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~  192 (344)
T 1rjb_A          116 GACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KS  192 (344)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             EEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            999999999999999999999999976532                      37899999999999999999999   99


Q ss_pred             eEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-C
Q 003199          657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-G  735 (840)
Q Consensus       657 ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g  735 (840)
                      |+||||||+||+++.++.+||+|||++...... ..........||+.|+|||.+.+..++.++||||||+++|||+| |
T Consensus       193 ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~-~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g  271 (344)
T 1rjb_A          193 CVHRDLAARNVLVTHGKVVKICDFGLARDIMSD-SNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLG  271 (344)
T ss_dssp             EEETTCSGGGEEEETTTEEEECCCGGGSCGGGC-TTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTS
T ss_pred             cccCCCChhhEEEcCCCcEEeCCCccCcccccC-ccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999876542 22223345567889999999988899999999999999999998 9


Q ss_pred             CCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCC
Q 003199          736 RKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR  814 (840)
Q Consensus       736 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~  814 (840)
                      +.||...... ........          .........   .....+.+++.+||+.||++|||+.+++++|+.+....
T Consensus       272 ~~p~~~~~~~-~~~~~~~~----------~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~  336 (344)
T 1rjb_A          272 VNPYPGIPVD-ANFYKLIQ----------NGFKMDQPF---YATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADA  336 (344)
T ss_dssp             CCSSTTCCCS-HHHHHHHH----------TTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred             CCCcccCCcH-HHHHHHHh----------cCCCCCCCC---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHH
Confidence            9999764211 11111100          000111111   12345777888999999999999999999998765543

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=2.6e-40  Score=356.28  Aligned_cols=252  Identities=25%  Similarity=0.383  Sum_probs=201.8

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      .++|...+.||+|+||+||+|..+ +|+.||||++......       .....+.+..|..++..+ +||||+++++++.
T Consensus        16 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~   88 (345)
T 1xjd_A           16 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVL-------MDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQ   88 (345)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHH-------HTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhh-------hhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEE
Confidence            467888999999999999999765 6899999998543211       112245677888898877 8999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      +....++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+
T Consensus        89 ~~~~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~  164 (345)
T 1xjd_A           89 TKENLFFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGM  164 (345)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCCCEEEeEChh
Confidence            9999999999999999999998754 68999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ++....   .........||+.|+|||++.+..++.++||||+||++|||++|+.||.+..    ....+......    
T Consensus       165 a~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~i~~~----  233 (345)
T 1xjd_A          165 CKENML---GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD----EEELFHSIRMD----  233 (345)
T ss_dssp             CBCCCC---TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHC----
T ss_pred             hhhccc---CCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHhC----
Confidence            975422   1223455689999999999999999999999999999999999999997531    11111111000    


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH-HHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN-EVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~-evl~~  806 (840)
                           ....+..+   ...+.+++.+|++.||++||++. +++++
T Consensus       234 -----~~~~p~~~---s~~~~~li~~lL~~dp~~R~~~~~~i~~h  270 (345)
T 1xjd_A          234 -----NPFYPRWL---EKEAKDLLVKLFVREPEKRLGVRGDIRQH  270 (345)
T ss_dssp             -----CCCCCTTS---CHHHHHHHHHHSCSSGGGSBTTBSCGGGS
T ss_pred             -----CCCCCccc---CHHHHHHHHHHhcCCHhHcCCChHHHHcC
Confidence                 11122222   34566788899999999999997 77654

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=7.2e-40  Score=354.88  Aligned_cols=251  Identities=25%  Similarity=0.368  Sum_probs=188.6

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .+.|...+.||+|+||.||+|... +++.||||++....            ..+.+.+|++++++++||||+++++++.+
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~------------~~~~~~~E~~~l~~l~h~niv~~~~~~~~  119 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV------------DKKIVRTEIGVLLRLSHPNIIKLKEIFET  119 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------------------CHHHHHCCCTTBCCEEEEEEC
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch------------hHHHHHHHHHHHHhCCCCCCcceeeeEec
Confidence            456888899999999999999765 68899999985322            13457789999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---CCCCeeecc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---NYQPKVADF  680 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~Df  680 (840)
                      ....++||||+++|+|.+++.... .+++.++..++.|++.||+|||+   .+|+||||||+||+++.   ++.+||+||
T Consensus       120 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Df  195 (349)
T 2w4o_A          120 PTEISLVLELVTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADF  195 (349)
T ss_dssp             SSEEEEEECCCCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCC
T ss_pred             CCeEEEEEEeCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEccC
Confidence            999999999999999999998754 68999999999999999999999   99999999999999975   889999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |+++....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||......   ...+... ....
T Consensus       196 g~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~~~~i-~~~~  267 (349)
T 2w4o_A          196 GLSKIVEH----QVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD---QFMFRRI-LNCE  267 (349)
T ss_dssp             C--------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH---HHHHHHH-HTTC
T ss_pred             ccccccCc----ccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc---HHHHHHH-HhCC
Confidence            99987532    22234567999999999999989999999999999999999999999753211   1011110 0000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .       ....+........+.+++.+|++.||++|||+.|++++
T Consensus       268 ~-------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  306 (349)
T 2w4o_A          268 Y-------YFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH  306 (349)
T ss_dssp             C-------CCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             C-------ccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0       00111112234567788889999999999999999986

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-39  Score=343.16  Aligned_cols=253  Identities=32%  Similarity=0.475  Sum_probs=196.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||+||+|... ++.||||++...            ...+.+.+|++++++++||||+++++++.+  
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--   72 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE------------SERKAFIVELRQLSRVNHPNIVKLYGACLN--   72 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST------------THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--
T ss_pred             hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh------------hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--
Confidence            46778889999999999999876 789999998422            124678899999999999999999998874  


Q ss_pred             cceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC-Ceeecccc
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ-PKVADFGI  682 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~-~kl~Dfg~  682 (840)
                      ..++||||+++|+|.+++....  ..+++..+..++.|+++||+|||+.+.++|+||||||+||+++.++. +||+|||+
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~  152 (307)
T 2eva_A           73 PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGT  152 (307)
T ss_dssp             TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC
T ss_pred             CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccc
Confidence            4789999999999999998654  24788999999999999999999865568999999999999998887 79999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +.....      ......||+.|+|||.+.+..++.++||||||+++|||++|+.||...... .....|...       
T Consensus       153 ~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~-------  218 (307)
T 2eva_A          153 ACDIQT------HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGP-AFRIMWAVH-------  218 (307)
T ss_dssp             ------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSS-HHHHHHHHH-------
T ss_pred             cccccc------ccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCcc-HHHHHHHHh-------
Confidence            976532      122346899999999999989999999999999999999999999753211 111111100       


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                           ..............+.+++.+||+.||++|||+.++++.|+.+..
T Consensus       219 -----~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  263 (307)
T 2eva_A          219 -----NGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMR  263 (307)
T ss_dssp             -----TTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGG
T ss_pred             -----cCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence                 000111111223456778889999999999999999999987643

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=2.7e-40  Score=353.03  Aligned_cols=262  Identities=24%  Similarity=0.333  Sum_probs=195.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|.. .+++.||||++.....       ........+.+|+.++++++||||+++++++...
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   84 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLA-------RDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAE   84 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTT-------TSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCcccc-------CCHHHHHHHHHHHHHHHcCCCCCcceEEEeeecc
Confidence            5788899999999999999965 6799999999854321       1234456789999999999999999999998776


Q ss_pred             ccc----eEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          605 YCN----LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       605 ~~~----~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      ...    ++||||+++|+|.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+||+++.++.+||+||
T Consensus        85 ~~~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Df  160 (311)
T 3ork_A           85 TPAGPLPYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDF  160 (311)
T ss_dssp             ETTEEEEEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEETTSCEEECCC
T ss_pred             CCCCcccEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEcCCCCEEEeec
Confidence            544    99999999999999998764 68999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |+++................||+.|+|||++.+..++.++||||||+++|||++|+.||.....   ....+.  .....
T Consensus       161 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~---~~~~~~--~~~~~  235 (311)
T 3ork_A          161 GIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP---VSVAYQ--HVRED  235 (311)
T ss_dssp             SCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHH--HHHCC
T ss_pred             cCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh---HHHHHH--HhcCC
Confidence            9998765433333334456799999999999999999999999999999999999999975311   110000  00000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH-hhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL-LAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~-L~~~  810 (840)
                      ...    .....   ......+.+++.+||+.||++||++.+++++ +...
T Consensus       236 ~~~----~~~~~---~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  279 (311)
T 3ork_A          236 PIP----PSARH---EGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV  279 (311)
T ss_dssp             CCC----HHHHS---TTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             CCC----ccccc---CCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence            000    00001   1123456778889999999999977666554 4443

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=3.4e-40  Score=354.45  Aligned_cols=258  Identities=24%  Similarity=0.327  Sum_probs=198.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcE----EEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEV----VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|...+.||+|+||+||+|... +++.    ||+|.+......         .....+.+|+.++++++||||++++++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~---------~~~~~~~~e~~~l~~l~h~~iv~~~~~   83 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR---------QSFQAVTDHMLAIGSLDHAHIVRLLGL   83 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSC---------SCBCSCCHHHHHHHTCCCTTBCCEEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccH---------HHHHHHHHHHHHHhcCCCCCcCeEEEE
Confidence            45778889999999999999654 5554    777776433211         112345679999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +. ....++||||+++|+|.+++......+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+||
T Consensus        84 ~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Df  159 (325)
T 3kex_A           84 CP-GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADF  159 (325)
T ss_dssp             EC-BSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSSCEEECSC
T ss_pred             Ec-CCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCCeEEECCC
Confidence            86 456789999999999999998765578999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+++..... ..........||+.|+|||.+.+..++.++||||||+++|||++ |+.||.....  ........   ..
T Consensus       160 g~a~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~---~~  233 (325)
T 3kex_A          160 GVADLLPPD-DKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL--AEVPDLLE---KG  233 (325)
T ss_dssp             SGGGGSCCC-TTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT--THHHHHHH---TT
T ss_pred             CcccccCcc-cccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH--HHHHHHHH---cC
Confidence            999876442 22223345678889999999998999999999999999999999 9999976321  11111110   00


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      .       .......   ....+.+++.+||+.||.+||++.+++++|+.+..
T Consensus       234 ~-------~~~~~~~---~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~  276 (325)
T 3kex_A          234 E-------RLAQPQI---CTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR  276 (325)
T ss_dssp             C-------BCCCCTT---BCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred             C-------CCCCCCc---CcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            0       0001111   12245668889999999999999999999987654

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=4.1e-39  Score=339.87  Aligned_cols=259  Identities=28%  Similarity=0.491  Sum_probs=202.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+++.||||++......   .........+.+.+|++++++++||||+++++++.+.
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   95 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSE---GETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP   95 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTT---CCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccc---cchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC
Confidence            4677888999999999999966 57999999998543321   1111122236789999999999999999999999765


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCCEEEcCCCC-----Cee
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSP--IIHRDIKSTNILLDVNYQ-----PKV  677 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~~~~~-----~kl  677 (840)
                      .  ++||||+++|+|.+.+......+++..+..++.|++.||+|||+   ++  |+||||||+||+++.++.     +||
T Consensus        96 ~--~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~~ivH~dikp~Nil~~~~~~~~~~~~kl  170 (287)
T 4f0f_A           96 P--RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQN---QNPPIVHRDLRSPNIFLQSLDENAPVCAKV  170 (287)
T ss_dssp             T--EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCSCCSGGGEEESCCCTTCSCCEEE
T ss_pred             C--eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHh---CCCCeecCCCCcceEEEeccCCCCceeEEe
Confidence            5  69999999999999998776689999999999999999999999   88  999999999999988776     999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccc--cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY--SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      +|||+++...      .......||+.|+|||.+.  ...++.++||||||+++|||++|+.||..............  
T Consensus       171 ~Dfg~~~~~~------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~--  242 (287)
T 4f0f_A          171 ADFGLSQQSV------HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMI--  242 (287)
T ss_dssp             CCCTTCBCCS------SCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHH--
T ss_pred             CCCCcccccc------ccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHH--
Confidence            9999987432      2344567999999999983  45578999999999999999999999975322111111100  


Q ss_pred             hhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                       ..      .........   .....+.+++.+||+.||++|||+.|+++.|+++
T Consensus       243 -~~------~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          243 -RE------EGLRPTIPE---DCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             -HH------SCCCCCCCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             -hc------cCCCCCCCc---ccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence             00      001111222   2234577788899999999999999999999864

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.1e-39  Score=349.32  Aligned_cols=267  Identities=28%  Similarity=0.390  Sum_probs=202.3

Q ss_pred             HHHHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc--CCCCcceee
Q 003199          521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI--RHKNIVKLY  598 (840)
Q Consensus       521 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~  598 (840)
                      ...+.++|...+.||+|+||.||+|... |+.||||++....             ...+..|.+++...  +||||++++
T Consensus        32 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-------------~~~~~~e~~~~~~~~~~h~~i~~~~   97 (337)
T 3mdy_A           32 QRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE-------------EASWFRETEIYQTVLMRHENILGFI   97 (337)
T ss_dssp             HTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG-------------HHHHHHHHHHHTSTTCCCTTBCCEE
T ss_pred             ccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc-------------cchhhhHHHHHHHHhhcCCCeeeEE
Confidence            4556789999999999999999999876 8999999984321             22344455555554  899999999


Q ss_pred             eEEecC----ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCC--------CeEecCCCCCC
Q 003199          599 CYFSSL----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLS--------PIIHRDIKSTN  666 (840)
Q Consensus       599 ~~~~~~----~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~--------~ivH~Dlk~~N  666 (840)
                      +++...    ...++||||+++|+|.+++...  .+++..+..++.|++.||+|||+   .        +|+||||||+|
T Consensus        98 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~~~~ivH~Dikp~N  172 (337)
T 3mdy_A           98 AADIKGTGSWTQLYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLHT---EIFSTQGKPAIAHRDLKSKN  172 (337)
T ss_dssp             EEEEESCGGGCEEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHS---CBCSTTCBCCEECSCCCGGG
T ss_pred             EEEccCCCCCCceEEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHH---hhhhhccCCCEEecccchHH
Confidence            999876    6789999999999999999775  58999999999999999999998   6        99999999999


Q ss_pred             EEEcCCCCCeeecccchhhhhccCCC-CcceecccccccccCccccccCCCCcc------ccchhHHHHHHHHHhC----
Q 003199          667 ILLDVNYQPKVADFGIAKVLQARGGK-DSTTTVIAGTYGYLAPEYAYSSKATTK------CDVYSFGVVLMELITG----  735 (840)
Q Consensus       667 ill~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~slG~il~el~tg----  735 (840)
                      |+++.++.+||+|||+++........ ........||+.|+|||++.+...+.+      +|||||||++|||++|    
T Consensus       173 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~  252 (337)
T 3mdy_A          173 ILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSG  252 (337)
T ss_dssp             EEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBT
T ss_pred             EEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcc
Confidence            99999999999999999765432111 112234579999999999987766655      9999999999999999    


Q ss_pred             ------CCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCC--cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          736 ------RKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGS--FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       736 ------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                            +.||..................      ........+..  ..+....+.+++.+||+.||++|||+.|++++|
T Consensus       253 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  326 (337)
T 3mdy_A          253 GIVEEYQLPYHDLVPSDPSYEDMREIVC------IKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTL  326 (337)
T ss_dssp             TBCCCCCCTTTTTSCSSCCHHHHHHHHT------TSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             cccccccccHhhhcCCCCchhhhHHHHh------hhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHH
Confidence                  5666543222222111111100      00011111111  125567788999999999999999999999999


Q ss_pred             hhcCC
Q 003199          808 AEADP  812 (840)
Q Consensus       808 ~~~~~  812 (840)
                      +++..
T Consensus       327 ~~l~~  331 (337)
T 3mdy_A          327 AKMSE  331 (337)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87643

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.3e-39  Score=349.94  Aligned_cols=253  Identities=24%  Similarity=0.323  Sum_probs=194.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEe----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||.||+|..    .+|+.||||++......      ........+.+|+.+++.++||||+++++++
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~------~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~   90 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIV------RNAKDTAHTKAERNILEEVKHPFIVDLIYAF   90 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------------HHHHHHHCCCTTBCCEEEEE
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhh------hhhhHHHHHHHHHHHHHhCCCCCccceeEEE
Confidence            5788899999999999999976    47899999998543211      1122345678899999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ......++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||
T Consensus        91 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~Dfg  166 (327)
T 3a62_A           91 QTGGKLYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFG  166 (327)
T ss_dssp             ECSSCEEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTSCEEECCCS
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCCcEEEEeCC
Confidence            99999999999999999999998654 68999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +++.....   ........||+.|+|||++.+..++.++||||||+++|||++|+.||.....     ..........  
T Consensus       167 ~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~~~~~i~~~--  236 (327)
T 3a62_A          167 LCKESIHD---GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR-----KKTIDKILKC--  236 (327)
T ss_dssp             CC-------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHHT--
T ss_pred             cccccccC---CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHhC--
Confidence            99764321   2223456799999999999998999999999999999999999999975311     0111000000  


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHh
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQLL  807 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~L  807 (840)
                            ...++..+   ...+.+++.+|++.||++||     ++.|++++-
T Consensus       237 ------~~~~p~~~---~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp  278 (327)
T 3a62_A          237 ------KLNLPPYL---TQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHP  278 (327)
T ss_dssp             ------CCCCCTTS---CHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSG
T ss_pred             ------CCCCCCCC---CHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCC
Confidence                  01112222   34566788899999999999     888998863

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=5.5e-40  Score=363.82  Aligned_cols=260  Identities=22%  Similarity=0.262  Sum_probs=203.7

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||+|..+ +++.||||++......       .......+.+|+.++..++||||+++++++.+
T Consensus        73 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~-------~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  145 (437)
T 4aw2_A           73 REDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEML-------KRAETACFREERDVLVNGDSKWITTLHYAFQD  145 (437)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHH-------HTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhh-------hHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            367889999999999999999765 5889999998532211       11112347889999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++......+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+||+|||+|
T Consensus       146 ~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILl~~~g~vkL~DFGla  222 (437)
T 4aw2_A          146 DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSC  222 (437)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeeEcCCCCEEEcchhhh
Confidence            999999999999999999998755579999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      +....  ..........||+.|+|||++.     ...++.++|||||||++|||++|+.||.+...    ...... ...
T Consensus       223 ~~~~~--~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~----~~~~~~-i~~  295 (437)
T 4aw2_A          223 LKLME--DGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL----VETYGK-IMN  295 (437)
T ss_dssp             EECCT--TSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHH-HHT
T ss_pred             hhccc--CCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCCh----hHHHHh-hhh
Confidence            76533  1222334568999999999986     45789999999999999999999999975311    101100 000


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHh
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT--RPTMNEVVQLL  807 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rps~~evl~~L  807 (840)
                      ..      .....+.........+.+++.+|+..+|++  ||+++|++++=
T Consensus       296 ~~------~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hp  340 (437)
T 4aw2_A          296 HK------ERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHP  340 (437)
T ss_dssp             HH------HHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSG
T ss_pred             cc------ccccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCCC
Confidence            00      000111111123345667778999888888  99999999873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.1e-39  Score=362.85  Aligned_cols=324  Identities=21%  Similarity=0.209  Sum_probs=213.3

Q ss_pred             CEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeec
Q 003199           44 EVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL  123 (840)
Q Consensus        44 ~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L  123 (840)
                      +.++.+++   .+..+|...   .++|+.|+|++|.+++..+..|.++++|++|+|++|.|++..|..|..+++|++|+|
T Consensus        14 ~~v~c~~~---~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           14 RAVLCHRK---RFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TEEECCSC---CCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCC---CcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence            34555555   444555432   134555566666655555555555555566666555555555555555555555555


Q ss_pred             ccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcc
Q 003199          124 YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTG  203 (840)
Q Consensus       124 ~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  203 (840)
                      ++|+ +....+..|.++++|++|+|++|.++...+..|..+++|++|+|++|.+.+..+..|.++++|++|+|++|++++
T Consensus        88 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A           88 RSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             CSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             CCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence            5554 222222334555555555555555554445555555555555555555554444455555555555555555554


Q ss_pred             cCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccC
Q 003199          204 EVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS  283 (840)
Q Consensus       204 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  283 (840)
                      ..+..|..+++|+.|+|++|.+                        .+..+..|..+++|++|++++|.+.+.+|..+..
T Consensus       167 ~~~~~l~~l~~L~~L~l~~n~i------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  222 (477)
T 2id5_A          167 IPTEALSHLHGLIVLRLRHLNI------------------------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY  222 (477)
T ss_dssp             CCHHHHTTCTTCCEEEEESCCC------------------------CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred             cChhHhcccCCCcEEeCCCCcC------------------------cEeChhhcccCcccceeeCCCCccccccCccccc
Confidence            3333444445555555555444                        4455556777788888888887776677776666


Q ss_pred             CCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhc
Q 003199          284 LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLM  363 (840)
Q Consensus       284 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  363 (840)
                      ..+|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..|..+++|+.|+
T Consensus       223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  302 (477)
T 2id5_A          223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN  302 (477)
T ss_dssp             TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred             CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence            67888888888888876667788888888888888888887777888888899999999998888888888899999999


Q ss_pred             ccCCccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          364 LQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       364 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      |++|+|++..+..|..+++|+.|+|++|+|++..+
T Consensus       303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            99999988777788889999999999999886544

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=5.4e-40  Score=361.16  Aligned_cols=258  Identities=23%  Similarity=0.272  Sum_probs=201.9

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|...+.||+|+||+||+|..+ +++.||+|++......       .....+.+.+|+.+++.++||||+++++++.+
T Consensus        68 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~-------~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           68 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMI-------KRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH-------HTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             ccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhh-------hhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            357888999999999999999665 6899999998542211       01112347789999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++...  .+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DFG~a  215 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTC  215 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeeECCCCCEEEecccee
Confidence            99999999999999999999865  58999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCC----CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK----ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      +....  ..........||+.|+|||++.+..    ++.++|||||||++|||++|+.||.....     ..........
T Consensus       216 ~~~~~--~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~~~i~~~  288 (410)
T 3v8s_A          216 MKMNK--EGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-----VGTYSKIMNH  288 (410)
T ss_dssp             EECCT--TSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHTH
T ss_pred             Eeecc--CCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCCh-----hhHHHHHHhc
Confidence            76533  1122334668999999999987655    78999999999999999999999975311     1111000000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHhh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT--RPTMNEVVQLLA  808 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rps~~evl~~L~  808 (840)
                      ..   . .  ..+ ........+.+++.+|++.+|.+  ||+++||++|-.
T Consensus       289 ~~---~-~--~~p-~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~  332 (410)
T 3v8s_A          289 KN---S-L--TFP-DDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLF  332 (410)
T ss_dssp             HH---H-C--CCC-TTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGG
T ss_pred             cc---c-c--cCC-CcccccHHHHHHHHHHccChhhhCCCCCHHHHhcCcc
Confidence            00   0 0  011 01112345667778999999988  999999999843

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=2.1e-39  Score=339.04  Aligned_cols=252  Identities=23%  Similarity=0.352  Sum_probs=201.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC-
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-  604 (840)
                      ++|...+.||+|+||.||+|... |+.||||++.....        .....+.+.+|+.++++++||||+++++++.+. 
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   80 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDW--------STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPP   80 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTC--------CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTT
T ss_pred             HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEeccccc--------CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCC
Confidence            46788899999999999999886 89999999854321        123356799999999999999999999999877 


Q ss_pred             -ccceEEEeecCCCChHHHhhcCCC-CCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCCEEEcCCCCCeeecc
Q 003199          605 -YCNLLVYEYMPNGNLWDALHKGLV-HLDWPTRHKIAFGVAQGLAYLHHGLLSP--IIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       605 -~~~~lV~e~~~~gsL~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                       ...++||||+++|+|.+++..... .+++..+..++.|++.||+|||+   .+  ++||||||+||+++.++.++++||
T Consensus        81 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~l~~~  157 (271)
T 3kmu_A           81 APHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT---LEPLIPRHALNSRSVMIDEDMTARISMA  157 (271)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTT---SSSCCTTCCCSGGGEEECTTSCEEEEGG
T ss_pred             CCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc---CCCceecCCCccceEEEcCCcceeEEec
Confidence             778999999999999999987642 58999999999999999999999   78  999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCc---cccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATT---KCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      |++....        .....||+.|+|||.+.+..++.   ++||||||+++|||++|+.||.....    ........ 
T Consensus       158 ~~~~~~~--------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~~~~-  224 (271)
T 3kmu_A          158 DVKFSFQ--------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN----MEIGMKVA-  224 (271)
T ss_dssp             GSCCTTS--------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH----HHHHHHHH-
T ss_pred             cceeeec--------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh----HHHHHHHH-
Confidence            8875432        22346899999999988765444   89999999999999999999975311    00000000 


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                            ...........   ....+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       225 ------~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~  269 (271)
T 3kmu_A          225 ------LEGLRPTIPPG---ISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ  269 (271)
T ss_dssp             ------HSCCCCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             ------hcCCCCCCCCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence                  00011112222   2345677888999999999999999999998865

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-39  Score=355.77  Aligned_cols=261  Identities=25%  Similarity=0.321  Sum_probs=193.8

Q ss_pred             cCccCeeeccCCcEEEEEEeC--CC--cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN--SG--EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      |...+.||+|+||.||+|...  ++  ..||||.+....         .....+.+.+|+.++++++||||+++++++..
T Consensus        91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~  161 (373)
T 3c1x_A           91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---------DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR  161 (373)
T ss_dssp             EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS---------CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECC
T ss_pred             eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC---------CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEc
Confidence            556678999999999999653  22  368999874322         12335678999999999999999999998754


Q ss_pred             -CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          604 -LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       604 -~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                       ....++||||+++|+|.+++......+++.++..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+
T Consensus       162 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG~  238 (373)
T 3c1x_A          162 SEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGL  238 (373)
T ss_dssp             CSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC--
T ss_pred             CCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCccchheEEECCCCCEEEeeccc
Confidence             567799999999999999998776678999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCC-CcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          683 AKVLQARGGK-DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       683 a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ++........ ........+|+.|+|||.+.+..++.++||||||+++|||++ |.+||......  ......   ....
T Consensus       239 a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~--~~~~~~---~~~~  313 (373)
T 3c1x_A          239 ARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYL---LQGR  313 (373)
T ss_dssp             -------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS--CHHHHH---HTTC
T ss_pred             cccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH--HHHHHH---HcCC
Confidence            9876432111 112234567889999999999999999999999999999999 77787653211  111111   0000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                             ....+.   .....+.+++.+||+.||++|||+.|+++.|+++.....
T Consensus       314 -------~~~~p~---~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~  358 (373)
T 3c1x_A          314 -------RLLQPE---YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI  358 (373)
T ss_dssp             -------CCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred             -------CCCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence                   001111   123457778889999999999999999999987654443

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.4e-39  Score=348.14  Aligned_cols=259  Identities=26%  Similarity=0.371  Sum_probs=207.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|..      .+++.||||++.....         ....+.+.+|+.+++++ +||||++++
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~~h~~i~~~~   93 (313)
T 1t46_A           23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---------LTEREALMSELKVLSYLGNHMNIVNLL   93 (313)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---------HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchh---------HHHHHHHHHHHHHHhhcccCCCeeeEE
Confidence            5688889999999999999964      3578999999853321         22356789999999999 899999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCCC-----------------CCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGLV-----------------HLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      +++......++||||+++|+|.+++.....                 .+++..+..++.|++.||+|||+   ++|+|||
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~d  170 (313)
T 1t46_A           94 GACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRD  170 (313)
T ss_dssp             EEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             EEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH---CCeecCC
Confidence            999999999999999999999999976532                 48999999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+||+++.++.+||+|||+++...... .........||+.|+|||.+.+..++.++||||||+++|||++ |+.||.
T Consensus       171 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  249 (313)
T 1t46_A          171 LAARNILLTHGRITKICDFGLARDIKNDS-NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYP  249 (313)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCTTSCT-TSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             CccceEEEcCCCCEEEccccccccccccc-cceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999998764421 1122334567889999999999999999999999999999999 999997


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ..... .......          ..........   .....+.+++.+|++.||.+|||+.|++++|+++.
T Consensus       250 ~~~~~-~~~~~~~----------~~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  306 (313)
T 1t46_A          250 GMPVD-SKFYKMI----------KEGFRMLSPE---HAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI  306 (313)
T ss_dssp             TCCSS-HHHHHHH----------HHTCCCCCCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cccch-hHHHHHh----------ccCCCCCCcc---cCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence            53211 1111000          0001111111   22345677888999999999999999999998653

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=345.75  Aligned_cols=259  Identities=24%  Similarity=0.323  Sum_probs=194.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccC----------------chhhHHHHHHHHHHHHHHhc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSAS----------------DTDQLQLDKGLKTEVETLGN  588 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~----------------~~~~~~~~~~~~~E~~~l~~  588 (840)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++..........                ........+.+.+|++++++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   92 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK   92 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence            4688889999999999999965 578999999986543211000                00011224568899999999


Q ss_pred             cCCCCcceeeeEEec--CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCC
Q 003199          589 IRHKNIVKLYCYFSS--LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTN  666 (840)
Q Consensus       589 l~h~niv~l~~~~~~--~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~N  666 (840)
                      ++||||+++++++.+  ....++||||+++++|.+++...  .+++..+..++.|++.||+|||+   .+|+||||||+|
T Consensus        93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~N  167 (298)
T 2zv2_A           93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK--PLSEDQARFYFQDLIKGIEYLHY---QKIIHRDIKPSN  167 (298)
T ss_dssp             CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGG
T ss_pred             CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHH
Confidence            999999999999986  56789999999999998876543  68999999999999999999999   999999999999


Q ss_pred             EEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCC---CCccccchhHHHHHHHHHhCCCCCCCCC
Q 003199          667 ILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK---ATTKCDVYSFGVVLMELITGRKPVEDDF  743 (840)
Q Consensus       667 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~slG~il~el~tg~~p~~~~~  743 (840)
                      |+++.++.+||+|||+++....   .........||+.|+|||.+.+..   ++.++|||||||++|||++|+.||....
T Consensus       168 il~~~~~~~kl~Dfg~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  244 (298)
T 2zv2_A          168 LLVGEDGHIKIADFGVSNEFKG---SDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER  244 (298)
T ss_dssp             EEECTTSCEEECCCTTCEECSS---SSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             EEECCCCCEEEecCCCcccccc---ccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence            9999999999999999976543   122334567999999999987655   3788999999999999999999997531


Q ss_pred             CCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           ...+........      ..  . +........+.+++.+||+.||++|||+.|++++
T Consensus       245 -----~~~~~~~~~~~~------~~--~-~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h  293 (298)
T 2zv2_A          245 -----IMCLHSKIKSQA------LE--F-PDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLH  293 (298)
T ss_dssp             -----HHHHHHHHHHCC------CC--C-CSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred             -----HHHHHHHHhccc------CC--C-CCccccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence                 111111000000      00  0 0111223456778889999999999999999865

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=2e-39  Score=352.86  Aligned_cols=253  Identities=24%  Similarity=0.306  Sum_probs=191.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||+||+|... +|+.||||++.....           ..+.+.+|+.+++.++||||+++++++.+.
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----------~~~~~~~E~~~l~~l~hpniv~~~~~~~~~   88 (361)
T 3uc3_A           20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-----------IDENVQREIINHRSLRHPNIVRFKEVILTP   88 (361)
T ss_dssp             TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-----------SCHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-----------ccHHHHHHHHHHHhCCCCCCCcEEEEEeeC
Confidence            46888999999999999999665 799999999854321           124577899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC--Ceeecccc
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ--PKVADFGI  682 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~--~kl~Dfg~  682 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.  +||+|||+
T Consensus        89 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~  164 (361)
T 3uc3_A           89 THLAIIMEYASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGY  164 (361)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCCC
T ss_pred             CEEEEEEEeCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCceEEEeecCc
Confidence            99999999999999999997654 69999999999999999999999   99999999999999987765  99999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCcc-ccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTK-CDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ++....    ........||+.|+|||++.+..++.+ +||||+||++|||++|+.||........ .............
T Consensus       165 a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~-~~~~~~~~~~~~~  239 (361)
T 3uc3_A          165 SKSSVL----HSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRD-YRKTIQRILSVKY  239 (361)
T ss_dssp             C-------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCC-HHHHHHHHHTTCC
T ss_pred             cccccc----cCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHH-HHHHHHHHhcCCC
Confidence            975422    222344579999999999988777655 8999999999999999999976422111 1111111110000


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                              ..+. .......+.+++.+|++.||++|||+.|++++-
T Consensus       240 --------~~~~-~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp  276 (361)
T 3uc3_A          240 --------SIPD-DIRISPECCHLISRIFVADPATRISIPEIKTHS  276 (361)
T ss_dssp             --------CCCT-TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSH
T ss_pred             --------CCCC-cCCCCHHHHHHHHHHccCChhHCcCHHHHHhCc
Confidence                    0111 011234567788899999999999999999884

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3e-39  Score=340.35  Aligned_cols=256  Identities=22%  Similarity=0.320  Sum_probs=204.1

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|.. .+|+.||+|++......        ....+.+.+|+.++++++||||+++++++.+
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   76 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS--------ARDFQKLEREARICRKLQHPNIVRLHDSIQE   76 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC--------HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC--------HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEc
Confidence            35788899999999999999965 46899999998543321        2334678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC---Ceeecc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ---PKVADF  680 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~Df  680 (840)
                      ....++||||+++++|.+.+.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.   +||+||
T Consensus        77 ~~~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~Df  152 (284)
T 3kk8_A           77 ESFHYLVFDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADF  152 (284)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSTTCCEEECCC
T ss_pred             CCEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcCcCCCCHHHEEEecCCCCCcEEEeec
Confidence            999999999999999999887764 68999999999999999999999   99999999999999986655   999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |++.....    ........||+.|+|||.+.+..++.++||||+|+++|||++|+.||.....  ...  .........
T Consensus       153 g~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~--~~~--~~~~~~~~~  224 (284)
T 3kk8_A          153 GLAIEVND----SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRL--YAQIKAGAY  224 (284)
T ss_dssp             TTCEECCS----SCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHH--HHHHHHTCC
T ss_pred             eeeEEccc----CccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCch--hHH--HHHHHhccc
Confidence            99976532    2233456799999999999999999999999999999999999999975311  111  111000000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                              ....+........+.+++.+|++.||++|||+.|++++-.
T Consensus       225 --------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~  264 (284)
T 3kk8_A          225 --------DYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPW  264 (284)
T ss_dssp             --------CCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHH
T ss_pred             --------cCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcCcc
Confidence                    0011111223345677888999999999999999998643

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1.8e-39  Score=350.43  Aligned_cols=259  Identities=25%  Similarity=0.346  Sum_probs=205.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe--------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL--------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~  596 (840)
                      ++|+..+.||+|+||.||+|..        .++..||||++....         .....+.+.+|+++++++ +||||++
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~~hp~iv~  105 (334)
T 2pvf_A           35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---------TEKDLSDLVSEMEMMKMIGKHKNIIN  105 (334)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC---------CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC---------cHHHHHHHHHHHHHHHHhhcCCCEee
Confidence            5788889999999999999975        356789999985332         123356788999999999 8999999


Q ss_pred             eeeEEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          597 LYCYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      +++++.+....++||||+++|+|.+++....               ..+++.++..++.|++.||+|||+   .+|+|||
T Consensus       106 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~D  182 (334)
T 2pvf_A          106 LLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRD  182 (334)
T ss_dssp             EEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             EEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeCCC
Confidence            9999999999999999999999999998653               248999999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+||+++.++.+||+|||+++...... .........+|+.|+|||++.+..++.++||||||+++|||++ |+.||.
T Consensus       183 lkp~NIll~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  261 (334)
T 2pvf_A          183 LAARNVLVTENNVMKIADFGLARDINNID-YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP  261 (334)
T ss_dssp             CSGGGEEECTTCCEEECCCTTCEECTTTS-SEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CccceEEEcCCCCEEEccccccccccccc-cccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcC
Confidence            99999999999999999999997654321 1122334467889999999988889999999999999999999 999997


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      +..  ....   .....       .........   .....+.+++.+||+.||++|||+.|++++|+++..
T Consensus       262 ~~~--~~~~---~~~~~-------~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~  318 (334)
T 2pvf_A          262 GIP--VEEL---FKLLK-------EGHRMDKPA---NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT  318 (334)
T ss_dssp             TCC--HHHH---HHHHH-------HTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCC--HHHH---HHHHh-------cCCCCCCCc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            531  1111   10000       000011111   223456778889999999999999999999987643

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.8e-39  Score=363.36  Aligned_cols=250  Identities=26%  Similarity=0.397  Sum_probs=202.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ..|...+.||+|+||.||+|... +|+.||||++.....       ........+.+|+.+++.++||||+++++++...
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~-------~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~   88 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKI-------RSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTP   88 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHH-------HHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhc-------cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC
Confidence            46788899999999999999665 799999999853321       1122346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        89 ~~~~lv~E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp~NIll~~~~~vkL~DFG~a~  164 (476)
T 2y94_A           89 SDIFMVMEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSN  164 (476)
T ss_dssp             SEEEEEEECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEECTTCCEEECCCSSCE
T ss_pred             CEEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccHHHEEEecCCCeEEEeccchh
Confidence            99999999999999999998654 68999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ....    ........||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+...  ...   ........   
T Consensus       165 ~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~--~~~---~~~i~~~~---  232 (476)
T 2y94_A          165 MMSD----GEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV--PTL---FKKICDGI---  232 (476)
T ss_dssp             ECCT----TCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS--HHH---HHHHHTTC---
T ss_pred             hccc----cccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH--HHH---HHHHhcCC---
Confidence            7532    222345679999999999988765 7899999999999999999999975311  111   11000000   


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           ...+..   ....+.+++.+|++.||++|||+.|++++
T Consensus       233 -----~~~p~~---~s~~~~~Li~~~L~~dP~~Rpt~~eil~h  267 (476)
T 2y94_A          233 -----FYTPQY---LNPSVISLLKHMLQVDPMKRATIKDIREH  267 (476)
T ss_dssp             -----CCCCTT---CCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             -----cCCCcc---CCHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence                 001111   22456778889999999999999999986

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1e-39  Score=352.69  Aligned_cols=252  Identities=25%  Similarity=0.287  Sum_probs=202.5

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      .++|...+.||+|+||+||+|..+ +|+.||||++......       .....+.+..|..++..+ .||+|+++++++.
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~-------~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~   91 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVI-------QDDDVECTMVEKRVLALPGKPPFLTQLHSCFQ   91 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHH-------HTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-------cchHHHHHHHHHHHHHhcCCCCEEeeEEEEEE
Confidence            457888999999999999999765 5889999998543211       112345678899999988 7999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      +....++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||+
T Consensus        92 ~~~~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~  167 (353)
T 2i0e_A           92 TMDRLYFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGM  167 (353)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             cCCEEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEEcCCCcEEEEeCCc
Confidence            9999999999999999999998754 68999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      ++....   .........||+.|+|||++.+..++.++|||||||++|||++|+.||.+..   .  ..........   
T Consensus       168 a~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~---~--~~~~~~i~~~---  236 (353)
T 2i0e_A          168 CKENIW---DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED---E--DELFQSIMEH---  236 (353)
T ss_dssp             CBCCCC---TTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS---H--HHHHHHHHHC---
T ss_pred             cccccc---CCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC---H--HHHHHHHHhC---
Confidence            975322   1223445689999999999999999999999999999999999999997531   1  1111111100   


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~  806 (840)
                           ....+..   ....+.+++.+|++.||++||+     +.+++++
T Consensus       237 -----~~~~p~~---~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h  277 (353)
T 2i0e_A          237 -----NVAYPKS---MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  277 (353)
T ss_dssp             -----CCCCCTT---SCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred             -----CCCCCCC---CCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence                 0111222   2345667888999999999995     6888776

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.1e-39  Score=356.26  Aligned_cols=276  Identities=17%  Similarity=0.234  Sum_probs=204.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC------CcEEEEEEecccccccccC-chhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS------GEVVAVKKLWSQRTKVSAS-DTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|....      ++.||||++.......... ..........+..|+..++.++||||++++
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~  114 (364)
T 3op5_A           35 AAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYW  114 (364)
T ss_dssp             CEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEE
T ss_pred             CeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEE
Confidence            468888999999999999997754      4789999985443110000 000011123455677788899999999999


Q ss_pred             eEEecC----ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc--CC
Q 003199          599 CYFSSL----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD--VN  672 (840)
Q Consensus       599 ~~~~~~----~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~--~~  672 (840)
                      +++...    ...++||||+ +++|.+++......+++.++..++.||+.||+|||+   ++|+||||||+|||++  .+
T Consensus       115 ~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Nill~~~~~  190 (364)
T 3op5_A          115 GSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKASNLLLNYKNP  190 (364)
T ss_dssp             EEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEESSCT
T ss_pred             eeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCHHHEEEecCCC
Confidence            998764    4579999999 999999998876679999999999999999999999   9999999999999999  88


Q ss_pred             CCCeeecccchhhhhccCCCC----cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          673 YQPKVADFGIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                      +.+||+|||+++.+.......    .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.... ..
T Consensus       191 ~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~-~~  269 (364)
T 3op5_A          191 DQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD-PK  269 (364)
T ss_dssp             TCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC-HH
T ss_pred             CeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC-HH
Confidence            999999999998764422111    1223456999999999999999999999999999999999999999753222 11


Q ss_pred             hhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ...+..  ...........+..+..  ......+.+++..||+.||++||++.++++.|+++
T Consensus       270 ~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~  327 (364)
T 3op5_A          270 YVRDSK--IRYRENIASLMDKCFPA--ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG  327 (364)
T ss_dssp             HHHHHH--HHHHHCHHHHHHHHSCT--TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHH--HHhhhhHHHHHHHhccc--ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence            111111  11111122333322211  11134567788899999999999999999998754

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=3.8e-39  Score=355.53  Aligned_cols=274  Identities=20%  Similarity=0.262  Sum_probs=205.7

Q ss_pred             HhcCccCeeecc--CCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          526 EAMTEKNKVGQG--GSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       526 ~~~~~~~~lg~G--~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      .+|+..+.||+|  +||.||+|... +|+.||||++.....        .....+.+.+|+.+++.++||||+++++++.
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~   96 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEAC--------SNEMVTFLQGELHVSKLFNHPNIVPYRATFI   96 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGS--------CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEeccccc--------ChHHHHHHHHHHHHHHhCCCCCCCcEeEEEE
Confidence            468889999999  99999999665 799999999854321        1234577889999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      +....++||||+++|+|.+++... ...+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~kl~dfg  173 (389)
T 3gni_B           97 ADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLR  173 (389)
T ss_dssp             ETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCGG
T ss_pred             ECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcccc
Confidence            999999999999999999999765 2468999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCC----CcceecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          682 IAKVLQARGGK----DSTTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       682 ~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      .+......+..    ........||+.|+|||++.+  ..++.++|||||||++|||++|+.||.+........ .....
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~-~~~~~  252 (389)
T 3gni_B          174 SNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLL-EKLNG  252 (389)
T ss_dssp             GCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHH-HC---
T ss_pred             cceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHhcC
Confidence            98655332111    112233478999999999987  578999999999999999999999997632221110 00000


Q ss_pred             hhcc--------ccc-------------hhhhcc----------cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 003199          756 KVDT--------KEG-------------IMEVLD----------KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVV  804 (840)
Q Consensus       756 ~~~~--------~~~-------------~~~~~~----------~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl  804 (840)
                      ....        .+.             ......          ....+........+.+++.+||+.||++|||+.|++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell  332 (389)
T 3gni_B          253 TVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLL  332 (389)
T ss_dssp             -----------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHT
T ss_pred             CCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHh
Confidence            0000        000             000000          000001112235678899999999999999999999


Q ss_pred             HH--hhhcC
Q 003199          805 QL--LAEAD  811 (840)
Q Consensus       805 ~~--L~~~~  811 (840)
                      ++  +.++.
T Consensus       333 ~hp~f~~~~  341 (389)
T 3gni_B          333 NHSFFKQIK  341 (389)
T ss_dssp             TSGGGGGC-
T ss_pred             cCHHHHHHh
Confidence            87  44443

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=2.7e-39  Score=340.61  Aligned_cols=254  Identities=26%  Similarity=0.379  Sum_probs=197.2

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++.+.|...+.||+|+||.||+|.. .++..||+|++......         ...+.+.+|++++++++||||+++++++
T Consensus        19 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---------~~~~~~~~E~~~l~~l~hp~iv~~~~~~   89 (285)
T 3is5_A           19 TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ---------VPMEQIEAEIEVLKSLDHPNIIKIFEVF   89 (285)
T ss_dssp             CHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC---------SCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             ChhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccc---------hhHHHHHHHHHHHHhCCCchHHhHHHhe
Confidence            4567899999999999999999965 47899999998544321         1246788999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE---cCCCCC
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQP  675 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~  675 (840)
                      .+....++||||+++|+|.+++...   ...+++..+..++.|++.||+|||+   .+|+||||||+||++   +.++.+
T Consensus        90 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~  166 (285)
T 3is5_A           90 EDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPI  166 (285)
T ss_dssp             ECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCE
T ss_pred             ecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCE
Confidence            9999999999999999999988543   2478999999999999999999999   999999999999999   456789


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|||+++....    ........||+.|+|||.+. ..++.++||||||+++|||++|+.||.....  .   .....
T Consensus       167 kl~Dfg~a~~~~~----~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~--~---~~~~~  236 (285)
T 3is5_A          167 KIIDFGLAELFKS----DEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSL--E---EVQQK  236 (285)
T ss_dssp             EECCCCCCCC--------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--H---HHHHH
T ss_pred             EEEeeecceecCC----cccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCH--H---HHHhh
Confidence            9999999976533    22234567999999999875 5789999999999999999999999975310  0   00000


Q ss_pred             hhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       ..       ................+.+++.+|++.||++|||+.|++++
T Consensus       237 -~~-------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  279 (285)
T 3is5_A          237 -AT-------YKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHH  279 (285)
T ss_dssp             -HH-------HCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred             -hc-------cCCcccccccCcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             00       00011111111123456778889999999999999999875

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=376.82  Aligned_cols=251  Identities=22%  Similarity=0.278  Sum_probs=196.1

Q ss_pred             eeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceE
Q 003199          533 KVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      .||+|+||.||+|.+.   ++..||||++.....         ....+.+.+|++++++++|||||++++++.. +..++
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~---------~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~l  412 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE---------KADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALML  412 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCS---------STTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEE
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCC---------hHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEE
Confidence            7999999999999653   466899999854321         1235678999999999999999999999976 56899


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+++|+|.+++......+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||+++.....
T Consensus       413 v~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~  489 (613)
T 2ozo_A          413 VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKALGAD  489 (613)
T ss_dssp             EEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--
T ss_pred             EEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCC
Confidence            999999999999998766679999999999999999999999   99999999999999999999999999999876432


Q ss_pred             CCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhcc
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD  768 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  768 (840)
                      ...........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.....  ......+             ..
T Consensus       490 ~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~--~~~~~~i-------------~~  554 (613)
T 2ozo_A          490 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFI-------------EQ  554 (613)
T ss_dssp             ------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS--HHHHHHH-------------HT
T ss_pred             CceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHH-------------Hc
Confidence            222222233456789999999998999999999999999999998 9999976321  1111110             00


Q ss_pred             cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          769 KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       769 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      .............+.+++.+||+.||++||++.++++.|+++.
T Consensus       555 ~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~  597 (613)
T 2ozo_A          555 GKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACY  597 (613)
T ss_dssp             TCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            0011111223456778888999999999999999999998753

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=2.4e-39  Score=340.48  Aligned_cols=255  Identities=24%  Similarity=0.304  Sum_probs=200.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|...+.||+|+||.||+|....    +..||||++....         .....+.+.+|+.++++++||||+++++++
T Consensus        12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   82 (281)
T 3cc6_A           12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC---------TLDNKEKFMSEAVIMKNLDHPHIVKLIGII   82 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS---------CHHHHHHHHHHHHHHHHHCCTTBCCEEEEE
T ss_pred             cceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc---------CchHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            567888999999999999996542    3469999885432         123356789999999999999999999998


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+. ..++||||+++++|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||
T Consensus        83 ~~~-~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg  158 (281)
T 3cc6_A           83 EEE-PTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDFG  158 (281)
T ss_dssp             CSS-SCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEEETTEEEECCCC
T ss_pred             cCC-CCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEECCCCcEEeCccC
Confidence            754 5689999999999999998766679999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      ++......  .........+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.....  ........   .  
T Consensus       159 ~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~--~~~~~~~~---~--  229 (281)
T 3cc6_A          159 LSRYIEDE--DYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN--KDVIGVLE---K--  229 (281)
T ss_dssp             GGGCC-----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG--GGHHHHHH---H--
T ss_pred             CCcccccc--cccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh--HHHHHHHh---c--
Confidence            99876432  1122334567889999999988899999999999999999998 9999975321  11111100   0  


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                           .........   ....+.+++.+|++.||++|||+.|++++|+++
T Consensus       230 -----~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~  271 (281)
T 3cc6_A          230 -----GDRLPKPDL---CPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDV  271 (281)
T ss_dssp             -----TCCCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----CCCCCCCCC---CCHHHHHHHHHHccCCchhCcCHHHHHHHHHHH
Confidence                 000011111   234567788899999999999999999999865

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=2.6e-39  Score=339.83  Aligned_cols=252  Identities=29%  Similarity=0.445  Sum_probs=200.9

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|... +++.||||++....       .........+.+|++++++++||||+++++++.+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   80 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQ-------LEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD   80 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHH-------HHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccc-------cchhhHHHHHHHHHHHHHcCCCCCCcchhheEec
Confidence            357888999999999999999554 67899999984322       1122335678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~Dfg~~  156 (279)
T 3fdn_A           81 ATRVYLILEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWS  156 (279)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHT---TTCEECCCCGGGEEECTTSCEEECSCCEE
T ss_pred             CCEEEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHhEEEcCCCCEEEEecccc
Confidence            999999999999999999998754 68999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....     .......||+.|+|||.+.+..++.++||||||+++|||++|+.||....    ....+... .      
T Consensus       157 ~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~~-~------  220 (279)
T 3fdn_A          157 VHAPS-----SRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT----YQETYKRI-S------  220 (279)
T ss_dssp             SCC-------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHH-H------
T ss_pred             ccCCc-----ccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc----HHHHHHHH-H------
Confidence            65422     22344578999999999999899999999999999999999999997531    00000000 0      


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                        ......+...   ...+.+++.+|++.||++|||+.|++++-.
T Consensus       221 --~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~e~l~h~~  260 (279)
T 3fdn_A          221 --RVEFTFPDFV---TEGARDLISRLLKHNPSQRPMLREVLEHPW  260 (279)
T ss_dssp             --HTCCCCCTTS---CHHHHHHHHHHCCSSGGGSCCHHHHHHCHH
T ss_pred             --hCCCCCCCcC---CHHHHHHHHHHhccChhhCCCHHHHhhCcc
Confidence              0111112222   245667888999999999999999998843

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.5e-39  Score=343.79  Aligned_cols=257  Identities=25%  Similarity=0.307  Sum_probs=200.1

Q ss_pred             HhcCccC-eeeccCCcEEEEEEe---CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKN-KVGQGGSGTVYKIDL---NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~-~lg~G~~g~Vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|...+ .||+|+||.||+|..   .+++.||||++.....        .....+.+.+|+++++.++||||+++++++
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   87 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN--------DPALKDELLAEANVMQQLDNPYIVRMIGIC   87 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeeccccc--------CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            3566666 899999999999954   3468899999854321        123356789999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                       .....++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        88 -~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg  162 (291)
T 1xbb_A           88 -EAESWMLVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFG  162 (291)
T ss_dssp             -ESSSEEEEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCT
T ss_pred             -CCCCcEEEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCCcEEEccCC
Confidence             5567889999999999999998764 68999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++................+++.|+|||.+.+..++.++||||||+++|||++ |+.||.....  .......   ..  
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~~~~---~~--  235 (291)
T 1xbb_A          163 LSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG--SEVTAML---EK--  235 (291)
T ss_dssp             TCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHHH---HT--
T ss_pred             cceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHH---Hc--
Confidence            99876432222222333456789999999988889999999999999999999 9999975311  1111000   00  


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                           ........   .....+.+++.+||+.||++||++.++++.|+++
T Consensus       236 -----~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~  277 (291)
T 1xbb_A          236 -----GERMGCPA---GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY  277 (291)
T ss_dssp             -----TCCCCCCT---TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             -----CCCCCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                 00011112   2334677788899999999999999999999875

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.8e-39  Score=341.08  Aligned_cols=254  Identities=25%  Similarity=0.380  Sum_probs=203.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|...+.||+|+||.||+|...++..||||++.....           ..+.+.+|++++++++||||+++++++.+ +
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-----------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~   80 (279)
T 1qpc_A           13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-----------SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-E   80 (279)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-----------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-----------cHHHHHHHHHHHHhCCCcCcceEEEEEcC-C
Confidence            56788899999999999999988888999999854321           13568899999999999999999999874 4


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++++|.+++.... ..+++.++..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||++.
T Consensus        81 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  157 (279)
T 1qpc_A           81 PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLAR  157 (279)
T ss_dssp             SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHhhEEEcCCCCEEECCCcccc
Confidence            5799999999999999997542 258999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  .........+++.|+|||.+.+..++.++||||||+++|||++ |+.||.+...  ...   ......     
T Consensus       158 ~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~---~~~~~~-----  225 (279)
T 1qpc_A          158 LIEDN--EYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN--PEV---IQNLER-----  225 (279)
T ss_dssp             ECSSS--CEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHH---HHHHHT-----
T ss_pred             cccCc--ccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH--HHH---HHHHhc-----
Confidence            76431  1122234456789999999988889999999999999999999 9999975311  111   100000     


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                        ........   .....+.+++.+|++.||++|||+.++++.|+++.
T Consensus       226 --~~~~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~  268 (279)
T 1qpc_A          226 --GYRMVRPD---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF  268 (279)
T ss_dssp             --TCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --ccCCCCcc---cccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHH
Confidence              00111111   22346777888999999999999999999998754

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.8e-39  Score=339.42  Aligned_cols=253  Identities=26%  Similarity=0.431  Sum_probs=184.0

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|...+.||+|+||.||+|.. .+|+.||||++.....       ......+.+.+|+.++++++||||+++++++.+
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   82 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAM-------YKAGMVQRVQNEVKIHCQLKHPSILELYNYFED   82 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEEC
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhh-------hhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEcc
Confidence            35788899999999999999965 5799999999843221       112234678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++++|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        83 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~  159 (278)
T 3cok_A           83 SNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADFGLA  159 (278)
T ss_dssp             SSEEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTCCEEECCCTTC
T ss_pred             CCeEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEEeecce
Confidence            999999999999999999998766679999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ......   ........||+.|+|||.+.+..++.++||||||+++|||++|+.||........ . .  . ..      
T Consensus       160 ~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~-~--~-~~------  225 (278)
T 3cok_A          160 TQLKMP---HEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT-L-N--K-VV------  225 (278)
T ss_dssp             EECC-------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------CC------
T ss_pred             eeccCC---CCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH-H-H--H-Hh------
Confidence            765321   1122345789999999999988899999999999999999999999975321110 0 0  0 00      


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        ..+...+..   ....+.+++.+|++.||++|||+.+++++
T Consensus       226 --~~~~~~~~~---~~~~~~~li~~~l~~dp~~Rps~~~~l~h  263 (278)
T 3cok_A          226 --LADYEMPSF---LSIEAKDLIHQLLRRNPADRLSLSSVLDH  263 (278)
T ss_dssp             --SSCCCCCTT---SCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             --hcccCCccc---cCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence              000111122   23456678889999999999999999875

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.9e-39  Score=342.74  Aligned_cols=255  Identities=25%  Similarity=0.312  Sum_probs=207.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|+..+.||+|+||.||+|... ++..||||++....           ...+.+.+|++++++++||||+++++++.+.
T Consensus        13 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----------~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   81 (288)
T 3kfa_A           13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----------MEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE   81 (288)
T ss_dssp             GGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-----------THHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             cceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-----------HHHHHHHHHHHHHHhCCCCCEeeEEEEEccC
Confidence            56788899999999999999665 58899999985322           2246788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+++++|.+++... ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        82 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~  158 (288)
T 3kfa_A           82 PPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLS  158 (288)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCCCGG
T ss_pred             CCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccCccc
Confidence            9999999999999999999864 3458999999999999999999999   89999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      .....  ..........+|+.|+|||.+.+..++.++||||||+++|||++ |..||....  ........         
T Consensus       159 ~~~~~--~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~--~~~~~~~~---------  225 (288)
T 3kfa_A          159 RLMTG--DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELL---------  225 (288)
T ss_dssp             GTSCS--SSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHH---------
T ss_pred             eeccC--CccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHH---------
Confidence            87643  22233344567889999999998899999999999999999999 999997531  11111100         


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                       ..........   .....+.+++.+|++.||.+|||+.++++.|+.+.
T Consensus       226 -~~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~  270 (288)
T 3kfa_A          226 -EKDYRMERPE---GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF  270 (288)
T ss_dssp             -HTTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -hccCCCCCCC---CCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence             0001111111   22345777888999999999999999999998653

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=3.8e-39  Score=345.78  Aligned_cols=261  Identities=22%  Similarity=0.276  Sum_probs=206.7

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.+.|...+.||+|+||.||+|... +|+.||||++..........    ....+.+.+|+.++++++||||+++++++
T Consensus         9 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   84 (321)
T 2a2a_A            9 KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRR----GVSREEIEREVSILRQVLHHNVITLHDVY   84 (321)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSS----SBCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hhhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEeccccccccc----chhHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            35678999999999999999999654 78999999986544321111    11246788999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC----CCee
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY----QPKV  677 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl  677 (840)
                      .+....++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++    .+||
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH~---~~ivH~dikp~NIl~~~~~~~~~~~kl  160 (321)
T 2a2a_A           85 ENRTDVVLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKL  160 (321)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEE
T ss_pred             ecCCEEEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChHHEEEecCCCCcCCEEE
Confidence            99999999999999999999998754 68999999999999999999999   9999999999999999887    7999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +|||+++....    ........||+.|+|||.+.+..++.++||||||+++|||++|+.||.....    ....... .
T Consensus       161 ~Dfg~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~~~i-~  231 (321)
T 2a2a_A          161 IDFGLAHEIED----GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK----QETLANI-T  231 (321)
T ss_dssp             CCCTTCEECCT----TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH----HHHHHHH-H
T ss_pred             ccCccceecCc----cccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH----HHHHHHH-H
Confidence            99999976533    2223445799999999999988999999999999999999999999975311    0000000 0


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ....    ..+....   ......+.+++.+|++.||++|||+.|++++-
T Consensus       232 ~~~~----~~~~~~~---~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp  274 (321)
T 2a2a_A          232 SVSY----DFDEEFF---SHTSELAKDFIRKLLVKETRKRLTIQEALRHP  274 (321)
T ss_dssp             TTCC----CCCHHHH---TTCCHHHHHHHHTTSCSSTTTSCCHHHHHHST
T ss_pred             hccc----ccChhhh---cccCHHHHHHHHHHcCCChhhCcCHHHHhcCc
Confidence            0000    0000000   11234567788899999999999999999863

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1.7e-39  Score=348.39  Aligned_cols=248  Identities=22%  Similarity=0.344  Sum_probs=179.4

Q ss_pred             cCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecCccce
Q 003199          531 KNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~  608 (840)
                      .+.||+|+||.||+|... +|+.||||++...             ....+.+|+.+++.+. ||||+++++++.+....+
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-------------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~   82 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-------------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTF   82 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-------------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh-------------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEE
Confidence            378999999999999664 7899999998422             2356778999999997 999999999999999999


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC---CCeeecccchhh
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY---QPKVADFGIAKV  685 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~Dfg~a~~  685 (840)
                      +||||+++|+|.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+||+++.++   .+||+|||+++.
T Consensus        83 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~  158 (325)
T 3kn6_A           83 LVMELLNGGELFERIKKKK-HFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARL  158 (325)
T ss_dssp             EEECCCCSCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEC----CEEEECCCTTCEE
T ss_pred             EEEEccCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHHHEEEecCCCcccEEEecccccee
Confidence            9999999999999998764 79999999999999999999999   9999999999999998765   799999999976


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCC--cchhhhhhhhhccccch
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN--KNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~  763 (840)
                      ...   .........||+.|+|||++.+..++.++|||||||++|||++|+.||.......  .......          
T Consensus       159 ~~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~----------  225 (325)
T 3kn6_A          159 KPP---DNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIM----------  225 (325)
T ss_dssp             CCC-------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHH----------
T ss_pred             cCC---CCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHH----------
Confidence            532   1223345678999999999999999999999999999999999999997642211  0111100          


Q ss_pred             hhhcccccC--C-CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          764 MEVLDKKLS--G-SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       764 ~~~~~~~~~--~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ..+......  . .+......+.+++.+|++.||++|||+.|++++-.
T Consensus       226 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w  273 (325)
T 3kn6_A          226 KKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEW  273 (325)
T ss_dssp             HHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGG
T ss_pred             HHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChh
Confidence            111111111  1 11223456788889999999999999999987643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.4e-38  Score=356.02  Aligned_cols=369  Identities=26%  Similarity=0.281  Sum_probs=271.2

Q ss_pred             ccccccccCCC-CCCCCCCCEEecCCCcCcccCCccccCCCCC-------------CEEeCCCCCCCccCCCCccccccc
Q 003199            2 SFMYLTGTLPD-FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNL-------------EVLSFNENPGFKLWKLPESSIFRL   67 (840)
Q Consensus         2 ~~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L-------------~~L~L~~N~~~~l~~l~~~~~~~l   67 (840)
                      +.+.+ |.+|+ |+.+++|++|+|++|.+++.+|..++.+.+|             ++|++++|   .+..+|.    -.
T Consensus        19 ~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~---~l~~lp~----~~   90 (454)
T 1jl5_A           19 HSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL---GLSSLPE----LP   90 (454)
T ss_dssp             ----------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS---CCSCCCS----CC
T ss_pred             ccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC---ccccCCC----Cc
Confidence            45666 78885 9999999999999999999999999988865             99999999   5555554    13


Q ss_pred             ccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeee
Q 003199           68 TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLD  147 (840)
Q Consensus        68 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~  147 (840)
                      ++|+.|++++|.+++ +|..   +++|++|++++|++++ +|..   .++|++|++++|+ +. .+| .++++++|++|+
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~-l~-~lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQ-LE-KLP-ELQNSSFLKIID  159 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSC-CS-SCC-CCTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCC-CC-CCc-ccCCCCCCCEEE
Confidence            789999999999986 5653   3789999999999984 3322   2789999999998 33 477 599999999999


Q ss_pred             ccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccc
Q 003199          148 MSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG  227 (840)
Q Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  227 (840)
                      +++|++++ +|..   .++|++|++++|++++. | .+.++++|++|++++|++++ +|...   ++|++|++++|+++ 
T Consensus       160 l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          160 VDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-  228 (454)
T ss_dssp             CCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-
T ss_pred             CCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-
Confidence            99999995 5543   35899999999999874 4 58999999999999999985 44433   58999999999998 


Q ss_pred             cCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCC
Q 003199          228 PLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGN  307 (840)
Q Consensus       228 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  307 (840)
                      .+| .+..+++|++|++++|.+.+ +|..   +++|+.|++++|++++ +|..   .++|+.|++++|++++...    .
T Consensus       229 ~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~----~  295 (454)
T 1jl5_A          229 ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE----L  295 (454)
T ss_dssp             SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC----C
T ss_pred             ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC----c
Confidence            556 48899999999999999986 3432   4789999999999984 5653   3789999999999987421    1


Q ss_pred             CCCCceeecccceeeeccchhhccc-CcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEE
Q 003199          308 ARNLSELFMQRNQISGFIPSEIYRA-ISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVL  386 (840)
Q Consensus       308 l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  386 (840)
                      .++|+.|++++|++++. +    .+ .+|+.|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|++|
T Consensus       296 ~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L  362 (454)
T 1jl5_A          296 PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQL  362 (454)
T ss_dssp             CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred             CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEE
Confidence            36899999999999863 2    23 489999999999996 6654   588999999999998 4565   47899999


Q ss_pred             ECcCccccc--cCCchhhcc--------------CCCeEEccCCCCcC--cCCccccc
Q 003199          387 DLSNNLLTG--YIPESLCEL--------------LPNSINFSNNRLSG--PIPLSLIK  426 (840)
Q Consensus       387 ~l~~N~l~~--~~p~~~~~~--------------~~~~l~l~~N~l~~--~~p~~~~~  426 (840)
                      ++++|++++  .+|.++..+              .++.|++++|+++|  .+|.++..
T Consensus       363 ~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~  420 (454)
T 1jl5_A          363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED  420 (454)
T ss_dssp             ECCSSCCSSCCCCCTTCCEEECCC----------------------------------
T ss_pred             ECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence            999999998  788887765              35788999999987  77765443

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.1e-39  Score=356.48  Aligned_cols=272  Identities=23%  Similarity=0.279  Sum_probs=208.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||+||+|... +|+.||||++.....         ....+.+.+|++++++++||||+++++++...
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~   79 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF---------LRPVDVQMREFEVLKKLNHKNIVKLFAIEEET   79 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG---------GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc---------cchHHHHHHHHHHHHhcCCCCCCeEEEeeccC
Confidence            46788899999999999999665 699999999853321         12245678899999999999999999999775


Q ss_pred             c--cceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE----cCCCCCe
Q 003199          605 Y--CNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL----DVNYQPK  676 (840)
Q Consensus       605 ~--~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~k  676 (840)
                      .  ..++||||+++|+|.+++....  ..+++..+..++.|++.||+|||+   .+|+||||||+||++    +.++.+|
T Consensus        80 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~k  156 (396)
T 4eut_A           80 TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYK  156 (396)
T ss_dssp             TTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEECTTSCEEEE
T ss_pred             CCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCcCHHHEEEeecCCCceeEE
Confidence            5  6799999999999999998653  238999999999999999999999   999999999999999    7777899


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCcccccc--------CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS--------SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                      |+|||+++....    ........||+.|+|||++.+        ..++.++|||||||++|||++|+.||.........
T Consensus       157 L~DFG~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~  232 (396)
T 4eut_A          157 LTDFGAARELED----DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN  232 (396)
T ss_dssp             ECCGGGCEECCC----GGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTC
T ss_pred             EecCCCceEccC----CCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccch
Confidence            999999976532    223345679999999998865        56788999999999999999999999753332222


Q ss_pred             hhhhhhhhhccc-cchhhh---------ccccc---CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          749 IIYWVSIKVDTK-EGIMEV---------LDKKL---SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       749 ~~~~~~~~~~~~-~~~~~~---------~~~~~---~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      ............ .....+         .....   ..........+.+++.+|++.||++||++.|+++.++++-..
T Consensus       233 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          233 KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             HHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence            111111111100 000000         00011   112245667788899999999999999999999999876543

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=346.23  Aligned_cols=266  Identities=23%  Similarity=0.331  Sum_probs=198.6

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||+|... +|+.||||++.....        .....+.+.+|++++++++||||+++++++.+
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   73 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED--------DPVIKKIALREIRMLKQLKHPNLVNLLEVFRR   73 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC---------HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc--------chHHHHHHHHHHHHHHhCCCCCccchhheeec
Confidence            357888999999999999999665 699999998844321        23345678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        74 ~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  149 (311)
T 4agu_A           74 KRRLHLVFEYCDHTVLHELDRYQR-GVPEHLVKSITWQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGFA  149 (311)
T ss_dssp             TTEEEEEEECCSEEHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CCeEEEEEEeCCCchHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCCc
Confidence            999999999999999998887653 68999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc---
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT---  759 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~---  759 (840)
                      +....   .........||+.|+|||.+.+ ..++.++||||+|+++|||++|+.||......  ............   
T Consensus       150 ~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~  224 (311)
T 4agu_A          150 RLLTG---PSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDV--DQLYLIRKTLGDLIP  224 (311)
T ss_dssp             EECC---------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHHHCSCCH
T ss_pred             hhccC---cccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhccccc
Confidence            76542   1222345578999999999876 67899999999999999999999999753211  111000000000   


Q ss_pred             --------ccchhh--hcccccCC----CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          760 --------KEGIME--VLDKKLSG----SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       760 --------~~~~~~--~~~~~~~~----~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                              ......  ..+.....    .+......+.+++.+|++.||++|||++|++++-
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  286 (311)
T 4agu_A          225 RHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHP  286 (311)
T ss_dssp             HHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSG
T ss_pred             ccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcCh
Confidence                    000000  00000000    0112344577899999999999999999999873

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=356.50  Aligned_cols=259  Identities=24%  Similarity=0.250  Sum_probs=201.8

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||+|..+ +|+.||||++.....       ......+.+.+|..++..++||||+++++++.+
T Consensus        60 ~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~-------~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  132 (412)
T 2vd5_A           60 RDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDM-------LKRGEVSCFREERDVLVNGDRRWITQLHFAFQD  132 (412)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-------HHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHh-------hhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            467888999999999999999764 799999999853221       111223457889999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++.+....+++..+..++.||+.||+|||+   ++||||||||+|||++.++++||+|||++
T Consensus       133 ~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~g~vkL~DFGla  209 (412)
T 2vd5_A          133 ENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCGHIRLADFGSC  209 (412)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCCCCEEEeechhh
Confidence            999999999999999999998765579999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccc-------cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAY-------SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      +.....  .........||+.|+|||++.       +..++.++|||||||++|||++|+.||.....    ...+.. .
T Consensus       210 ~~~~~~--~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~----~~~~~~-i  282 (412)
T 2vd5_A          210 LKLRAD--GTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADST----AETYGK-I  282 (412)
T ss_dssp             EECCTT--SCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHH-H
T ss_pred             eeccCC--CccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCH----HHHHHH-H
Confidence            775431  122233468999999999986       35689999999999999999999999975311    111110 0


Q ss_pred             hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCC---CCHHHHHHHh
Q 003199          757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATR---PTMNEVVQLL  807 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---ps~~evl~~L  807 (840)
                      .....   ..   ..+........++.+++.+|+. +|++|   |+++|+++|=
T Consensus       283 ~~~~~---~~---~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hp  329 (412)
T 2vd5_A          283 VHYKE---HL---SLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHP  329 (412)
T ss_dssp             HTHHH---HC---CCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSG
T ss_pred             Hhccc---Cc---CCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCC
Confidence            00000   00   0111011223456678889999 99998   5999999873

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-39  Score=351.53  Aligned_cols=255  Identities=22%  Similarity=0.319  Sum_probs=195.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC--CCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH--KNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~  603 (840)
                      +.|+..+.||+|+||.||+|...+++.||||++.....        .....+.+.+|+.++++++|  +||+++++++.+
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~   80 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--------DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT   80 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC--------CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc--------chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEee
Confidence            35788899999999999999888899999999854321        13345778999999999986  999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||| +.+|+|.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+|||++ ++.+||+|||++
T Consensus        81 ~~~~~lv~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~-~~~~kl~DFG~a  154 (343)
T 3dbq_A           81 DQYIYMVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIA  154 (343)
T ss_dssp             SSEEEEEEC-CCSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEE-TTEEEECCCSSS
T ss_pred             CCEEEEEEe-CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEE-CCcEEEeecccc
Confidence            999999999 55889999998764 68999999999999999999999   9999999999999997 578999999999


Q ss_pred             hhhhccCCCCcceecccccccccCcccccc-----------CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhh
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYS-----------SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW  752 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~  752 (840)
                      +..... ..........||+.|+|||++.+           ..++.++|||||||++|||++|+.||.....   .....
T Consensus       155 ~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~~~  230 (343)
T 3dbq_A          155 NQMQPD-TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN---QISKL  230 (343)
T ss_dssp             CCC-------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCS---HHHHH
T ss_pred             cccCcc-cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh---HHHHH
Confidence            876432 11222345679999999999864           6789999999999999999999999975311   11110


Q ss_pred             hhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .. ....      ......+...   ...+.+++.+||+.||.+|||+.|++++-.
T Consensus       231 ~~-~~~~------~~~~~~~~~~---~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~  276 (343)
T 3dbq_A          231 HA-IIDP------NHEIEFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLAHPY  276 (343)
T ss_dssp             HH-HHCT------TSCCCCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred             HH-HhcC------CcccCCcccC---CHHHHHHHHHHcCCChhHCCCHHHHHhCcc
Confidence            00 0000      0001111111   235667888999999999999999998754

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=3.5e-39  Score=355.65  Aligned_cols=255  Identities=24%  Similarity=0.318  Sum_probs=191.0

Q ss_pred             HHHhcCcc-CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhc-cCCCCcceeeeE
Q 003199          524 ILEAMTEK-NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN-IRHKNIVKLYCY  600 (840)
Q Consensus       524 ~~~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~  600 (840)
                      +.+.|... +.||+|+||+||+|.. .+|+.||||++...               ..+.+|++++.+ .+||||++++++
T Consensus        59 ~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~---------------~~~~~E~~~~~~~~~hp~iv~l~~~  123 (400)
T 1nxk_A           59 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC---------------PKARREVELHWRASQCPHIVRIVDV  123 (400)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS---------------HHHHHHHHHHHHHTTSTTBCCEEEE
T ss_pred             ccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc---------------hhHHHHHHHHHHhcCCCCcceEeEE
Confidence            34556655 6899999999999965 47899999998321               235678887644 489999999998


Q ss_pred             Eec----CccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---C
Q 003199          601 FSS----LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---N  672 (840)
Q Consensus       601 ~~~----~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~  672 (840)
                      +..    ....++||||+++|+|.+++.... ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.   +
T Consensus       124 ~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~  200 (400)
T 1nxk_A          124 YENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPN  200 (400)
T ss_dssp             EEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTT
T ss_pred             EeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCC
Confidence            865    567899999999999999998753 468999999999999999999999   99999999999999997   7


Q ss_pred             CCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhh
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW  752 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~  752 (840)
                      +.+||+|||+++....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.............
T Consensus       201 ~~~kl~DFG~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~  276 (400)
T 1nxk_A          201 AILKLTDFGFAKETTS----HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK  276 (400)
T ss_dssp             CCEEECCCTTCEECC---------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHH
T ss_pred             ccEEEEecccccccCC----CCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHH
Confidence            8899999999976532    223345678999999999999999999999999999999999999997643221110000


Q ss_pred             hhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ...... ..   ..    ....+......+.+++.+||+.||++|||+.|++++-.
T Consensus       277 ~~i~~~-~~---~~----~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~  324 (400)
T 1nxk_A          277 TRIRMG-QY---EF----PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPW  324 (400)
T ss_dssp             HHHHHT-CC---CC----CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred             HHHHcC-cc---cC----CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCcc
Confidence            000000 00   00    01111223455777888999999999999999999854

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.5e-39  Score=351.14  Aligned_cols=258  Identities=24%  Similarity=0.345  Sum_probs=204.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CC-----cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SG-----EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~-----~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|...+.||+|+||.||+|... ++     ..||||++....         .....+.+.+|+.+++.+ +||||++++
T Consensus        46 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~~h~~iv~~~  116 (333)
T 2i1m_A           46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA---------HADEKEALMSELKIMSHLGQHENIVNLL  116 (333)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC---------CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             HHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc---------ChHHHHHHHHHHHHHHhhcCCCCeeeEE
Confidence            56888899999999999999754 23     479999985432         123356789999999999 899999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcC-------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKG-------------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKST  665 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~-------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~  665 (840)
                      +++......++||||+++|+|.+++...             ...+++..+..++.|++.||+|||+   ++|+||||||+
T Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~  193 (333)
T 2i1m_A          117 GACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAAR  193 (333)
T ss_dssp             EEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             EEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCcccc
Confidence            9999999999999999999999998753             2357999999999999999999999   99999999999


Q ss_pred             CEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCC
Q 003199          666 NILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFG  744 (840)
Q Consensus       666 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~  744 (840)
                      ||+++.++.+||+|||+++..... ..........||+.|+|||.+.+..++.++||||||+++|||++ |..||.+...
T Consensus       194 NIl~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  272 (333)
T 2i1m_A          194 NVLLTNGHVAKIGDFGLARDIMND-SNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV  272 (333)
T ss_dssp             GCEEEGGGEEEBCCCGGGCCGGGC-TTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS
T ss_pred             eEEECCCCeEEECccccccccccc-cceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch
Confidence            999999999999999999876442 12222334567889999999998899999999999999999999 9999975321


Q ss_pred             CCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          745 DNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      . ........          ..........   ....+.+++.+||+.||.+|||+.|++++|+++
T Consensus       273 ~-~~~~~~~~----------~~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~  324 (333)
T 2i1m_A          273 N-SKFYKLVK----------DGYQMAQPAF---APKNIYSIMQACWALEPTHRPTFQQICSFLQEQ  324 (333)
T ss_dssp             S-HHHHHHHH----------HTCCCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             h-HHHHHHHh----------cCCCCCCCCC---CCHHHHHHHHHHhccChhhCcCHHHHHHHHHHH
Confidence            1 11111000          0001111111   234567788899999999999999999999865

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=350.08  Aligned_cols=255  Identities=22%  Similarity=0.276  Sum_probs=204.9

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      .+..++|...+.||+|+||.||+|. ..+|+.||||++..........  ........+.+|+.++++++||||++++++
T Consensus        20 ~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~   97 (335)
T 3dls_A           20 GEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCW--IEDPKLGKVTLEIAILSRVEHANIIKVLDI   97 (335)
T ss_dssp             THHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSE--EEETTTEEEEHHHHHHTTCCCTTBCCEEEE
T ss_pred             cccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccc--cchHHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            3567899999999999999999996 4578999999986543221100  001112346679999999999999999999


Q ss_pred             EecCccceEEEeecCCC-ChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          601 FSSLYCNLLVYEYMPNG-NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~g-sL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      +.+....++||||+.+| +|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|
T Consensus        98 ~~~~~~~~lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~D  173 (335)
T 3dls_A           98 FENQGFFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAVGYLRL---KDIIHRDIKDENIVIAEDFTIKLID  173 (335)
T ss_dssp             EECSSEEEEEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECC
T ss_pred             EeeCCEEEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeEEeccCHHHEEEcCCCcEEEee
Confidence            99999999999999777 9999998764 69999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      ||+++....    ........||+.|+|||++.+..+ +.++|||||||++|||++|+.||.....       .      
T Consensus       174 fg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-------~------  236 (335)
T 3dls_A          174 FGSAAYLER----GKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE-------T------  236 (335)
T ss_dssp             CTTCEECCT----TCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG-------G------
T ss_pred             cccceECCC----CCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH-------H------
Confidence            999976533    223344679999999999988776 8899999999999999999999964210       0      


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                          .....  ..+..   ....+.+++.+|++.||++|||+.+++++-.
T Consensus       237 ----~~~~~--~~~~~---~~~~l~~li~~~L~~dP~~Rps~~ell~hp~  277 (335)
T 3dls_A          237 ----VEAAI--HPPYL---VSKELMSLVSGLLQPVPERRTTLEKLVTDPW  277 (335)
T ss_dssp             ----TTTCC--CCSSC---CCHHHHHHHHHHTCSSGGGSCCHHHHHHCTT
T ss_pred             ----Hhhcc--CCCcc---cCHHHHHHHHHHccCChhhCcCHHHHhcCcc
Confidence                00000  01111   2245677888999999999999999999844

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=6.5e-39  Score=359.84  Aligned_cols=260  Identities=23%  Similarity=0.291  Sum_probs=194.9

Q ss_pred             HHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||+|. ..+|+.||||++....        ......+.+.+|+.+++.++||||+++++++..
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~--------~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~  132 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF--------QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTP  132 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG--------GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECS
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc--------cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEcc
Confidence            4678889999999999999995 4579999999985432        113345678899999999999999999999965


Q ss_pred             Cc------cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 LY------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 ~~------~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      ..      ..++||||+++ ++.+.+..   .+++..+..++.|++.||+|||+   ++|+||||||+|||++.++.+||
T Consensus       133 ~~~~~~~~~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~~~kl  205 (464)
T 3ttj_A          133 QKTLEEFQDVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKI  205 (464)
T ss_dssp             CCSTTTCCEEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEE
T ss_pred             CCccccCCeEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCCCEEE
Confidence            43      46999999965 56666654   48999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +|||+|+....    ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+..    ....+.....
T Consensus       206 ~DFG~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~----~~~~~~~i~~  277 (464)
T 3ttj_A          206 LDFGLARTAGT----SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD----YIDQWNKVIE  277 (464)
T ss_dssp             CCCCCC---------CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHH
T ss_pred             EEEEeeeecCC----CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHH
Confidence            99999987632    223445689999999999999999999999999999999999999997532    1111111000


Q ss_pred             ccc--------------------------cchhhhccccc-CCCc---HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTK--------------------------EGIMEVLDKKL-SGSF---RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~--------------------------~~~~~~~~~~~-~~~~---~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ...                          ........... ....   ......+.+++.+|++.||++|||++|+++|=
T Consensus       278 ~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp  357 (464)
T 3ttj_A          278 QLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHP  357 (464)
T ss_dssp             HHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTST
T ss_pred             hcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcCh
Confidence            000                          00000000000 0000   11245688999999999999999999999873

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=3.1e-39  Score=349.27  Aligned_cols=253  Identities=27%  Similarity=0.359  Sum_probs=201.8

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .+.|...+.||+|+||.||+|.. .+|+.||||++.....       ......+.+.+|++++++++||||+++++++.+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~  125 (348)
T 1u5q_A           53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-------QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR  125 (348)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSS-------CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE
T ss_pred             hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccc-------cchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE
Confidence            45688899999999999999965 5799999999854321       123345678999999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+. |++.+.+......+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus       126 ~~~~~lv~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a  201 (348)
T 1u5q_A          126 EHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSA  201 (348)
T ss_dssp             TTEEEEEEECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTC
T ss_pred             CCeEEEEEecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeeccCc
Confidence            999999999996 78888887655679999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +....       .....||+.|+|||++.   +..++.++|||||||++|||++|+.||.....    ....... ....
T Consensus       202 ~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~----~~~~~~~-~~~~  269 (348)
T 1u5q_A          202 SIMAP-------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA----MSALYHI-AQNE  269 (348)
T ss_dssp             BSSSS-------BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHH-HHSC
T ss_pred             eecCC-------CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh----HHHHHHH-HhcC
Confidence            76532       23457999999999884   56789999999999999999999999965311    0000000 0000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhh
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE  809 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~  809 (840)
                            ........+   ...+.+++.+||+.||++|||+.+++++..-
T Consensus       270 ------~~~~~~~~~---~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~  309 (348)
T 1u5q_A          270 ------SPALQSGHW---SEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV  309 (348)
T ss_dssp             ------CCCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHTTCHHH
T ss_pred             ------CCCCCCCCC---CHHHHHHHHHHcccChhhCcCHHHHhhChhh
Confidence                  000011122   2346678889999999999999999987543

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=5.5e-39  Score=343.47  Aligned_cols=258  Identities=22%  Similarity=0.334  Sum_probs=193.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|...+.||+|+||.||+|...    ++..||||++.....        .....+.+.+|+.++++++||||+++++++
T Consensus        34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  105 (313)
T 3brb_A           34 NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS--------SQREIEEFLSEAACMKDFSHPNVIRLLGVC  105 (313)
T ss_dssp             GGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC--------CHHHHHHHHHHHHHHHTCCCTTBCCCCEEE
T ss_pred             HHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc--------chhHHHHHHHHHHHHhcCCCCCeeeeeEEE
Confidence            56788899999999999999553    345899999854321        123356788999999999999999999999


Q ss_pred             ecCcc-----ceEEEeecCCCChHHHhhc-----CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC
Q 003199          602 SSLYC-----NLLVYEYMPNGNLWDALHK-----GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV  671 (840)
Q Consensus       602 ~~~~~-----~~lV~e~~~~gsL~~~l~~-----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~  671 (840)
                      .+...     .++||||+++|+|.+++..     ....+++..++.++.|++.||+|||+   ++|+||||||+||+++.
T Consensus       106 ~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~  182 (313)
T 3brb_A          106 IEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN---RNFLHRDLAARNCMLRD  182 (313)
T ss_dssp             EC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCSGGGEEECT
T ss_pred             eeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcC
Confidence            77553     4899999999999999853     23468999999999999999999999   99999999999999999


Q ss_pred             CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchh
Q 003199          672 NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII  750 (840)
Q Consensus       672 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~  750 (840)
                      ++.+||+|||+++...... .........+++.|+|||.+.+..++.++||||||+++|||++ |+.||.....  ....
T Consensus       183 ~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~  259 (313)
T 3brb_A          183 DMTVCVADFGLSKKIYSGD-YYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN--HEMY  259 (313)
T ss_dssp             TSCEEECSCSCC-----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHH
T ss_pred             CCcEEEeecCcceeccccc-ccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH--HHHH
Confidence            9999999999998764321 1123344567889999999999999999999999999999999 8899875321  1111


Q ss_pred             hhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ..             ................+.+++.+||+.||++|||+.+++++|+++
T Consensus       260 ~~-------------~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l  306 (313)
T 3brb_A          260 DY-------------LLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL  306 (313)
T ss_dssp             HH-------------HHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HH-------------HHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            10             011111111122334677888899999999999999999999875

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=2.9e-39  Score=358.86  Aligned_cols=264  Identities=23%  Similarity=0.357  Sum_probs=194.4

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ..+.++|...+.||+|+||+||+|.. .+++.||||++........  ..........+.+|+.++++++||||++++++
T Consensus       131 ~~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~--~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~  208 (419)
T 3i6u_A          131 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIG--SAREADPALNVETEIEILKKLNHPCIIKIKNF  208 (419)
T ss_dssp             HHHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC----------CCHHHHHHHHHHCCCTTBCCCCEE
T ss_pred             hhhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhccc--ccccchhHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            45678899999999999999999955 5789999999865432211  11112223457899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC---CCCee
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN---YQPKV  677 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl  677 (840)
                      +... ..++||||+++|+|.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+|||++.+   +.+||
T Consensus       209 ~~~~-~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kl  283 (419)
T 3i6u_A          209 FDAE-DYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKI  283 (419)
T ss_dssp             EESS-EEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSSSCCEEE
T ss_pred             EecC-ceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCCcceEEE
Confidence            8654 5789999999999999987664 68999999999999999999999   999999999999999754   45999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCcccccc---CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +|||+|+....    ........||+.|+|||++.+   ..++.++|||||||++|||++|+.||........ ......
T Consensus       284 ~DFG~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~-~~~~i~  358 (419)
T 3i6u_A          284 TDFGHSKILGE----TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-LKDQIT  358 (419)
T ss_dssp             CCSSTTTSCC---------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC-HHHHHH
T ss_pred             eecccceecCC----CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH-HHHHHh
Confidence            99999987532    223345679999999999853   5688999999999999999999999975322111 111000


Q ss_pred             hhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                         ....       ......+......+.+++.+|++.||++|||+.|++++=
T Consensus       359 ---~~~~-------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp  401 (419)
T 3i6u_A          359 ---SGKY-------NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHP  401 (419)
T ss_dssp             ---TTCC-------CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSG
T ss_pred             ---cCCC-------CCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCCc
Confidence               0000       000000112235677888899999999999999999863

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=6.3e-39  Score=336.58  Aligned_cols=250  Identities=24%  Similarity=0.303  Sum_probs=202.1

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++.++|+..+.||+|+||.||+|... ++..||+|++.....          ...+.+.+|++++++++||||+++++++
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~----------~~~~~~~~E~~~l~~l~h~~i~~~~~~~   75 (277)
T 3f3z_A            6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV----------EDVDRFKQEIEIMKSLDHPNIIRLYETF   75 (277)
T ss_dssp             CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC----------SCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc----------chHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            45678999999999999999999655 578999999854321          1245688999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE---cCCCCCeee
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQPKVA  678 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~  678 (840)
                      .+....++||||+++++|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||++   +.++.+||+
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~  151 (277)
T 3f3z_A           76 EDNTDIYLVMELCTGGELFERVVHKR-VFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLI  151 (277)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred             ecCCeEEEEEeccCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEE
Confidence            99999999999999999999987754 68999999999999999999999   999999999999999   788899999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||++.....    ........||+.|+|||.+.+ .++.++||||||+++|||++|+.||.....    .......   
T Consensus       152 Dfg~~~~~~~----~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~~~---  219 (277)
T 3f3z_A          152 DFGLAARFKP----GKMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTD----SEVMLKI---  219 (277)
T ss_dssp             CCTTCEECCT----TSCBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHH---
T ss_pred             ecccceeccC----ccchhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCH----HHHHHHH---
Confidence            9999976532    223345579999999998765 489999999999999999999999975311    0000000   


Q ss_pred             cccchhhhcccccCC---CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 TKEGIMEVLDKKLSG---SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                              .......   ........+.+++.+|++.||++|||+.+++++
T Consensus       220 --------~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h  262 (277)
T 3f3z_A          220 --------REGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH  262 (277)
T ss_dssp             --------HHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             --------HhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                    0000000   001223567788889999999999999999875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=2.9e-39  Score=375.72  Aligned_cols=251  Identities=25%  Similarity=0.320  Sum_probs=195.8

Q ss_pred             CeeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccce
Q 003199          532 NKVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  608 (840)
                      +.||+|+||+||+|.+.   +++.||||+++....        .....+.+.+|++++++++|||||++++++.. +..+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~--------~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~  445 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN--------DPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWM  445 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGG--------CGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccC--------CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEE
Confidence            47999999999999553   568899999854321        12335779999999999999999999999965 4578


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhc
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA  688 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~  688 (840)
                      +||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+.+..
T Consensus       446 lv~E~~~~g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~  521 (635)
T 4fl3_A          446 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  521 (635)
T ss_dssp             EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC
T ss_pred             EEEEccCCCCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCcccccc
Confidence            9999999999999998754 68999999999999999999999   9999999999999999999999999999988754


Q ss_pred             cCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhc
Q 003199          689 RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL  767 (840)
Q Consensus       689 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  767 (840)
                      ............+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+...  ......             +.
T Consensus       522 ~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~--~~~~~~-------------i~  586 (635)
T 4fl3_A          522 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG--SEVTAM-------------LE  586 (635)
T ss_dssp             -------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHH-------------HH
T ss_pred             CccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHH-------------HH
Confidence            3222233344567889999999999999999999999999999998 9999975321  111000             00


Q ss_pred             ccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       768 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ..............+.+++.+||+.||++||++.++++.|+++
T Consensus       587 ~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~  629 (635)
T 4fl3_A          587 KGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY  629 (635)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            0111111122345677888899999999999999999999864

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=352.40  Aligned_cols=277  Identities=16%  Similarity=0.196  Sum_probs=201.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccC-chhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSAS-DTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ++|...+.||+|+||.||+|...    ++..||||++.......... ..........+.+|+..++.++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            46788899999999999999765    57899999986443211000 00011123457789999999999999999999


Q ss_pred             Eec----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC--C
Q 003199          601 FSS----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY--Q  674 (840)
Q Consensus       601 ~~~----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~--~  674 (840)
                      +..    ....++||||+ +++|.+++.... .+++.++..++.|++.||+|||+   .+|+||||||+||+++.++  .
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~  191 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIHE---NEYVHGDIKAANLLLGYKNPDQ  191 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEESSSTTS
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCcCHHHEEEccCCCCc
Confidence            977    67889999999 999999998765 78999999999999999999999   9999999999999999887  9


Q ss_pred             CeeecccchhhhhccCCC----CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchh
Q 003199          675 PKVADFGIAKVLQARGGK----DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII  750 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~  750 (840)
                      +||+|||+++.+......    ........||+.|+|||++.+..++.++|||||||++|||++|+.||...........
T Consensus       192 ~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~  271 (345)
T 2v62_A          192 VYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQ  271 (345)
T ss_dssp             EEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHH
T ss_pred             EEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHH
Confidence            999999999876432211    1122456799999999999998999999999999999999999999964322111111


Q ss_pred             hhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                       ......  ..............  ......+.+++.+||+.||++||++.++++.|++...
T Consensus       272 -~~~~~~--~~~~~~~~~~~~~~--~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          272 -TAKTNL--LDELPQSVLKWAPS--GSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             -HHHHHH--HHTTTHHHHHHSCT--TSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             -HHHHhh--cccccHHHHhhccc--cccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence             110000  00001111000000  0123467778889999999999999999999998765

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=2.4e-39  Score=349.02  Aligned_cols=256  Identities=23%  Similarity=0.300  Sum_probs=200.1

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCY  600 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~  600 (840)
                      .+.+.|+..+.||+|+||.||+|..+ +|+.||||++.....              ...+|++++.++ +||||++++++
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------------~~~~E~~~l~~~~~hp~iv~~~~~   84 (342)
T 2qr7_A           19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR--------------DPTEEIEILLRYGQHPNIITLKDV   84 (342)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC--------------CCHHHHHHHHHHTTSTTBCCEEEE
T ss_pred             CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC--------------ChHHHHHHHHHhcCCCCcCeEEEE
Confidence            45678999999999999999999654 789999999854321              123578888887 79999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC-C---CCe
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-Y---QPK  676 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~---~~k  676 (840)
                      +.+....++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++|+||||||+||++.++ +   .+|
T Consensus        85 ~~~~~~~~lv~E~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~k  160 (342)
T 2qr7_A           85 YDDGKYVYVVTELMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIR  160 (342)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEE
T ss_pred             EEcCCEEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEE
Confidence            999999999999999999999998764 68999999999999999999999   999999999999998543 3   499


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |+|||+++.....   ........||+.|+|||++.+..++.++|||||||++|||++|+.||.......  ........
T Consensus       161 l~Dfg~a~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~--~~~~~~~i  235 (342)
T 2qr7_A          161 ICDFGFAKQLRAE---NGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT--PEEILARI  235 (342)
T ss_dssp             ECCCTTCEECBCT---TCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSC--HHHHHHHH
T ss_pred             EEECCCcccCcCC---CCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCC--HHHHHHHH
Confidence            9999999865432   222345678999999999988889999999999999999999999997532211  11111110


Q ss_pred             hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .....   . ..   .+.+......+.+++.+|++.||++||++.|++++-.
T Consensus       236 ~~~~~---~-~~---~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~  280 (342)
T 2qr7_A          236 GSGKF---S-LS---GGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPW  280 (342)
T ss_dssp             HHCCC---C-CC---STTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHH
T ss_pred             ccCCc---c-cC---ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCe
Confidence            00000   0 00   1111223345677888999999999999999998743

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.3e-39  Score=359.03  Aligned_cols=270  Identities=25%  Similarity=0.367  Sum_probs=192.4

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeee
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYC  599 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~  599 (840)
                      +.+.++|+..+.||+|+||.||+|.. .+|+.||||++.....        .....+.+.+|+.+++.+. ||||+++++
T Consensus         5 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~--------~~~~~~~~~~E~~~l~~l~~h~niv~l~~   76 (388)
T 3oz6_A            5 RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ--------NSTDAQRTFREIMILTELSGHENIVNLLN   76 (388)
T ss_dssp             HHHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--C--------CHHHHHHHHHHHHHHHHTTTCTTBCCEEE
T ss_pred             CcccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccccc--------ChHHHHHHHHHHHHHHhccCCCCCCeeee
Confidence            45678899999999999999999954 5799999999843321        1234566789999999997 999999999


Q ss_pred             EEecCc--cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          600 YFSSLY--CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       600 ~~~~~~--~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      ++...+  ..++||||++ |+|.+++...  .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||
T Consensus        77 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl  150 (388)
T 3oz6_A           77 VLRADNDRDVYLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLHS---GGLLHRDMKPSNILLNAECHVKV  150 (388)
T ss_dssp             EEECTTSSCEEEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEE
T ss_pred             EEecCCCCEEEEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHeEEcCCCCEEe
Confidence            997543  6799999997 6999998874  68999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccC------------------CCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCC
Q 003199          678 ADFGIAKVLQARG------------------GKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKP  738 (840)
Q Consensus       678 ~Dfg~a~~~~~~~------------------~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p  738 (840)
                      +|||+|+.+....                  ..........||+.|+|||++.+ ..++.++||||+||++|||++|+.|
T Consensus       151 ~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~p  230 (388)
T 3oz6_A          151 ADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPI  230 (388)
T ss_dssp             CCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             cCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCC
Confidence            9999997653210                  01122344679999999999876 6789999999999999999999999


Q ss_pred             CCCCCCCCcchhhhhhhh-hccccchhhh------------------cccccCCCcH-------------HHHHHHHHHH
Q 003199          739 VEDDFGDNKNIIYWVSIK-VDTKEGIMEV------------------LDKKLSGSFR-------------DEMIQVLRIA  786 (840)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------------~~~~~~~~~~-------------~~~~~l~~l~  786 (840)
                      |.+.... .......... ....+.+...                  ........+.             .....+.+++
T Consensus       231 f~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll  309 (388)
T 3oz6_A          231 FPGSSTM-NQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLL  309 (388)
T ss_dssp             CCCSSHH-HHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHH
T ss_pred             CCCCCHH-HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHH
Confidence            9753210 0000000000 0000000000                  0000111111             1234677899


Q ss_pred             HHccCCCCCCCCCHHHHHHH
Q 003199          787 IRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       787 ~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+|++.||++|||+.|+++|
T Consensus       310 ~~~L~~dP~~R~t~~e~l~H  329 (388)
T 3oz6_A          310 DKLLQFNPNKRISANDALKH  329 (388)
T ss_dssp             HHHCCSSGGGSCCHHHHTTS
T ss_pred             HHhhccCcccCCCHHHHhCC
Confidence            99999999999999999988

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=2.8e-39  Score=366.08  Aligned_cols=255  Identities=25%  Similarity=0.315  Sum_probs=204.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|... +|+.||||++......       .......+.+|+.+++.++||||+++++++.+.
T Consensus       184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~-------~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~  256 (576)
T 2acx_A          184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIK-------KRKGEAMALNEKQILEKVNSRFVVSLAYAYETK  256 (576)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHH-------HTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhh-------hhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeC
Confidence            45778889999999999999664 7999999998543211       122345678999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+++|+|.+++.... ..+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||++
T Consensus       257 ~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DFGla  333 (576)
T 2acx_A          257 DALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLA  333 (576)
T ss_dssp             SEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             CEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEecccc
Confidence            99999999999999999997653 358999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.......... ........     
T Consensus       334 ~~~~~----~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~-~i~~~i~~-----  403 (576)
T 2acx_A          334 VHVPE----GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKRE-EVERLVKE-----  403 (576)
T ss_dssp             EECCT----TCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHH-HHHHHHHH-----
T ss_pred             eeccc----CccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHH-HHHHHhhc-----
Confidence            76532    223345689999999999999899999999999999999999999997642211111 11111000     


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                         ........+   ...+.+++.+|++.||++||     ++.|+++|
T Consensus       404 ---~~~~~p~~~---s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H  445 (576)
T 2acx_A          404 ---VPEEYSERF---SPQARSLCSQLLCKDPAERLGCRGGSAREVKEH  445 (576)
T ss_dssp             ---CCCCCCTTS---CHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred             ---ccccCCccC---CHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence               011122222   34566788899999999999     78999877

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=1e-38  Score=346.05  Aligned_cols=267  Identities=26%  Similarity=0.354  Sum_probs=208.6

Q ss_pred             HHHHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhc--cCCCCcceee
Q 003199          521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGN--IRHKNIVKLY  598 (840)
Q Consensus       521 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~  598 (840)
                      ...+.++|...+.||+|+||.||+|... |+.||||++...             ....+.+|++++..  ++||||++++
T Consensus        37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~-------------~~~~~~~e~~~~~~~~l~h~ni~~~~  102 (342)
T 1b6c_B           37 QRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR-------------EERSWFREAEIYQTVMLRHENILGFI  102 (342)
T ss_dssp             HHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGG-------------GHHHHHHHHHHHHHSCCCCTTBCCEE
T ss_pred             cccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCch-------------hHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence            4567789999999999999999999875 899999998422             13456778888877  7899999999


Q ss_pred             eEEecCc----cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHh--------hcCCCCeEecCCCCCC
Q 003199          599 CYFSSLY----CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH--------HGLLSPIIHRDIKSTN  666 (840)
Q Consensus       599 ~~~~~~~----~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlk~~N  666 (840)
                      +++....    ..++||||+++|+|.+++...  .+++..+..++.|++.||+|||        +   .+|+||||||+|
T Consensus       103 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~N  177 (342)
T 1b6c_B          103 AADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGK---PAIAHRDLKSKN  177 (342)
T ss_dssp             EEEECCCSSCCCEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB---CEEECSCCSGGG
T ss_pred             eeecccCCccceeEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCeeeCCCCHHH
Confidence            9998775    789999999999999999875  5899999999999999999999        6   899999999999


Q ss_pred             EEEcCCCCCeeecccchhhhhccCCCC-cceecccccccccCccccccCC------CCccccchhHHHHHHHHHhC----
Q 003199          667 ILLDVNYQPKVADFGIAKVLQARGGKD-STTTVIAGTYGYLAPEYAYSSK------ATTKCDVYSFGVVLMELITG----  735 (840)
Q Consensus       667 ill~~~~~~kl~Dfg~a~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~slG~il~el~tg----  735 (840)
                      |+++.++.+||+|||+++......... .......||+.|+|||.+.+..      ++.++||||||+++|||++|    
T Consensus       178 Ill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~  257 (342)
T 1b6c_B          178 ILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIG  257 (342)
T ss_dssp             EEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBT
T ss_pred             EEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcC
Confidence            999999999999999997664321110 1234557999999999987652      34789999999999999999    


Q ss_pred             ------CCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCc--HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          736 ------RKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSF--RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       736 ------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                            +.||............+......      ......+...+  .+....+.+++.+||+.||++|||+.|++++|
T Consensus       258 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L  331 (342)
T 1b6c_B          258 GIHEDYQLPYYDLVPSDPSVEEMRKVVCE------QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL  331 (342)
T ss_dssp             TBCCCCCCTTTTTSCSSCCHHHHHHHHTT------SCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHH
T ss_pred             CcccccccCccccCcCcccHHHHHHHHHH------HHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHH
Confidence                  67876543322222222211110      01111222211  24566788999999999999999999999999


Q ss_pred             hhcCC
Q 003199          808 AEADP  812 (840)
Q Consensus       808 ~~~~~  812 (840)
                      +++..
T Consensus       332 ~~i~~  336 (342)
T 1b6c_B          332 SQLSQ  336 (342)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.1e-39  Score=341.58  Aligned_cols=266  Identities=22%  Similarity=0.260  Sum_probs=199.0

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ...++|...+.||+|+||.||+|... +++.||||++.....       ......+.+.+|+.++++++||||+++++++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~  103 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLS-------SDPVFRTRMQREARTAGRLQEPHVVPIHDFG  103 (309)
T ss_dssp             ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGG-------GSHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccc-------cCHHHHHHHHHHHHHHhhcCCCCeeEEEEEE
Confidence            34577899999999999999999664 789999999854321       1234457789999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ......++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||
T Consensus       104 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~~~kl~Dfg  179 (309)
T 2h34_A          104 EIDGQLYVDMRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADDFAYLVDFG  179 (309)
T ss_dssp             EETTEEEEEEECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSCC
T ss_pred             eeCCeEEEEEEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCCCEEEecCc
Confidence            99999999999999999999998754 68999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ++......  .........||+.|+|||.+.+..++.++||||||+++|||++|+.||....   ..   ..........
T Consensus       180 ~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~---~~~~~~~~~~  251 (309)
T 2h34_A          180 IASATTDE--KLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ---LS---VMGAHINQAI  251 (309)
T ss_dssp             C------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH---HH---HHHHHHHSCC
T ss_pred             cCcccccc--ccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch---HH---HHHHHhccCC
Confidence            99776432  1222345578999999999999899999999999999999999999997531   00   1110110000


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHhhhcCCCC
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-TMNEVVQLLAEADPCR  814 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-s~~evl~~L~~~~~~~  814 (840)
                      ...    .....   .....+.+++.+||+.||++|| +++++++.|+.+-...
T Consensus       252 ~~~----~~~~~---~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~  298 (309)
T 2h34_A          252 PRP----STVRP---GIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA  298 (309)
T ss_dssp             CCG----GGTST---TCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred             CCc----cccCC---CCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence            000    01111   2233566788899999999999 9999999998765444

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=348.73  Aligned_cols=264  Identities=22%  Similarity=0.289  Sum_probs=194.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||+||+|... +++.||||++......         .....+.+|++++++++||||+++++++.+.
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---------~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   72 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEE---------GAPCTAIREVSLLKDLKHANIVTLHDIIHTE   72 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC---------------CCCCCCCHHHHSCCCCTTBCCEEEEEECS
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccccc---------ccchhHHHHHHHHHhcCCCCCCeeeeEEeeC
Confidence            46888899999999999999665 7899999998543311         1112344699999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||++ |+|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        73 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  148 (324)
T 3mtl_A           73 KSLTLVFEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHR---QKVLHRDLKPQNLLINERGELKLADFGLAR  148 (324)
T ss_dssp             SCEEEEEECCS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCCGGGEEECTTCCEEECSSSEEE
T ss_pred             CEEEEEecccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCcCHHHEEECCCCCEEEccCcccc
Confidence            99999999996 69999998776679999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh--cccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV--DTKE  761 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~--~~~~  761 (840)
                      ....   .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+...  ...........  ....
T Consensus       149 ~~~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--~~~~~~i~~~~~~~~~~  223 (324)
T 3mtl_A          149 AKSI---PTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTV--EEQLHFIFRILGTPTEE  223 (324)
T ss_dssp             CC---------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHHHCCCCTT
T ss_pred             cccC---CccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHhCCCChH
Confidence            6532   1223344578999999999876 5689999999999999999999999976321  11111100000  0000


Q ss_pred             chhhhc---------ccccC-CC----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          762 GIMEVL---------DKKLS-GS----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       762 ~~~~~~---------~~~~~-~~----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ......         .+... ..    .......+.+++.+|++.||++|||++|++++=
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp  283 (324)
T 3mtl_A          224 TWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHP  283 (324)
T ss_dssp             TSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSG
T ss_pred             hchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcCh
Confidence            000000         00000 00    011234667888999999999999999999863

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-39  Score=346.29  Aligned_cols=269  Identities=23%  Similarity=0.266  Sum_probs=197.4

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC---CCCcceeee
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR---HKNIVKLYC  599 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~  599 (840)
                      +.++|+..+.||+|+||+||+|.. .+|+.||||++.........     ......+.+|++++++++   ||||+++++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~-----~~~~~~~~~e~~~l~~l~~~~h~niv~~~~   81 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGG-----GGLPISTVREVALLRRLEAFEHPNVVRLMD   81 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTS-----SCCCHHHHHHHHHHHHHHHHCCTTBCCEEE
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccc-----cccchhHHHHHHHHHHHhhcCCCCeEEeee
Confidence            356899999999999999999965 57899999998644321110     111234556777776664   999999999


Q ss_pred             EEecCc-----cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC
Q 003199          600 YFSSLY-----CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY  673 (840)
Q Consensus       600 ~~~~~~-----~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~  673 (840)
                      ++....     ..++||||+. |+|.+++.... ..+++.++..++.|++.||+|||+   ++|+||||||+||+++.++
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~  157 (308)
T 3g33_A           82 VCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGG  157 (308)
T ss_dssp             EEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEECTTS
T ss_pred             eeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCC
Confidence            997655     4789999996 69999998764 348999999999999999999999   9999999999999999999


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      .+||+|||+++....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||....... ......
T Consensus       158 ~~kl~Dfg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~  232 (308)
T 3g33_A          158 TVKLADFGLARIYSY----QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIF  232 (308)
T ss_dssp             CEEECSCSCTTTSTT----CCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHH-HHHHHH
T ss_pred             CEEEeeCccccccCC----CcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHH
Confidence            999999999986632    223345678999999999999999999999999999999999999997532110 000000


Q ss_pred             hhh-hccccchh-------hhcccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          754 SIK-VDTKEGIM-------EVLDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       754 ~~~-~~~~~~~~-------~~~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ... ........       ...........    .+....+.+++.+|++.||++|||+.|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          233 DLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             HHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence            000 00000000       00000000000    1223567788889999999999999999976

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=3.2e-39  Score=345.50  Aligned_cols=264  Identities=23%  Similarity=0.314  Sum_probs=187.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|... +|+.||||++......         ...+.+.+|++++++++||||+++++++.+.
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   75 (317)
T 2pmi_A            5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEE---------GTPSTAIREISLMKELKHENIVRLYDVIHTE   75 (317)
T ss_dssp             --------------CEEEEEECSSSCCEEEEEEEECCSTT---------CSCHHHHHHHHHHTTCCBTTBCCEEEEECCT
T ss_pred             cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccccc---------ccHHHHHHHHHHHHhcCCCCcceEEEEEEEC
Confidence            56788899999999999999654 6899999998543311         1124577899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCC-----CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGL-----VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      ...++||||++ |+|.+++....     ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        76 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~D  151 (317)
T 2pmi_A           76 NKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGD  151 (317)
T ss_dssp             TEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECC
T ss_pred             CeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECc
Confidence            99999999997 69999886532     358999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      ||+++.....   ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.... ............
T Consensus       152 fg~~~~~~~~---~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~  227 (317)
T 2pmi_A          152 FGLARAFGIP---VNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDE-EQLKLIFDIMGT  227 (317)
T ss_dssp             CSSCEETTSC---CCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCS
T ss_pred             CccceecCCC---cccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCC
Confidence            9999876321   222344578999999999876 46899999999999999999999999753211 000000000000


Q ss_pred             c-ccchhh---------hcccccCCCcH---------HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 T-KEGIME---------VLDKKLSGSFR---------DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ~-~~~~~~---------~~~~~~~~~~~---------~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      . ......         ...........         .....+.+++.+|++.||++|||+.|++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          228 PNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             CCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             CChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence            0 000000         00000000111         123467788889999999999999999986

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=2.5e-39  Score=352.26  Aligned_cols=246  Identities=25%  Similarity=0.296  Sum_probs=190.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHH-HhccCCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET-LGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~  603 (840)
                      ++|+..+.||+|+||+||+|..+ +++.||||++......       .......+..|..+ ++.++||||+++++++.+
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~-------~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~  110 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAIL-------KKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT  110 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC--------------------CCBCCCCCTTBCCEEEEEEC
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhh-------hhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEe
Confidence            56888999999999999999665 6899999998654321       11223455667776 577899999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||++
T Consensus       111 ~~~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~ikL~DFG~a  186 (373)
T 2r5t_A          111 ADKLYFVLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLC  186 (373)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCBC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEeeCccc
Confidence            999999999999999999998754 68999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +....   .........||+.|+|||++.+..++.++|||||||++|||++|+.||....     ...........    
T Consensus       187 ~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~-----~~~~~~~i~~~----  254 (373)
T 2r5t_A          187 KENIE---HNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN-----TAEMYDNILNK----  254 (373)
T ss_dssp             GGGBC---CCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB-----HHHHHHHHHHS----
T ss_pred             ccccc---CCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC-----HHHHHHHHHhc----
Confidence            86432   2223456689999999999999999999999999999999999999997531     11111100100    


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN  801 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~  801 (840)
                          ...+...+   ...+.+++.+|++.||++||++.
T Consensus       255 ----~~~~~~~~---~~~~~~li~~lL~~dp~~R~~~~  285 (373)
T 2r5t_A          255 ----PLQLKPNI---TNSARHLLEGLLQKDRTKRLGAK  285 (373)
T ss_dssp             ----CCCCCSSS---CHHHHHHHHHHTCSSGGGSTTTT
T ss_pred             ----ccCCCCCC---CHHHHHHHHHHcccCHHhCCCCC
Confidence                01112222   23566778899999999999974

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=3.5e-39  Score=340.85  Aligned_cols=254  Identities=20%  Similarity=0.272  Sum_probs=199.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CC-------cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCccee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SG-------EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKL  597 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l  597 (840)
                      ++|...+.||+|+||.||+|... ++       ..||+|++....          ....+.+.+|++++++++||||+++
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~----------~~~~~~~~~E~~~l~~l~h~~iv~~   77 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH----------RNYSESFFEAASMMSKLSHKHLVLN   77 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG----------GGGHHHHHHHHHHHHTSCCTTBCCE
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc----------HHHHHHHHHHHHHHHhCCCCCEeEE
Confidence            46788899999999999999554 34       479999984322          2335678999999999999999999


Q ss_pred             eeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC---
Q 003199          598 YCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ---  674 (840)
Q Consensus       598 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---  674 (840)
                      ++++.+....++||||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.   
T Consensus        78 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~  154 (289)
T 4fvq_A           78 YGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRKT  154 (289)
T ss_dssp             EEEECCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEEECCBGGG
T ss_pred             EEEEEeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhh---CCeECCCcCcceEEEecCCcccc
Confidence            999999999999999999999999998876569999999999999999999999   99999999999999998887   


Q ss_pred             -----CeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          675 -----PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       675 -----~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                           +||+|||++.....       .....||+.|+|||.+.+ ..++.++||||||+++|||++|..|+.....  ..
T Consensus       155 ~~~~~~kl~Dfg~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~--~~  225 (289)
T 4fvq_A          155 GNPPFIKLSDPGISITVLP-------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALD--SQ  225 (289)
T ss_dssp             TBCCEEEECCCCSCTTTSC-------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--HH
T ss_pred             cccceeeeccCcccccccC-------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccc--hH
Confidence                 99999999865422       233568899999999887 6789999999999999999996544432111  00


Q ss_pred             hhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                        ........         ........   ...+.+++.+||+.||++|||+.|++++|+++.....
T Consensus       226 --~~~~~~~~---------~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~  278 (289)
T 4fvq_A          226 --RKLQFYED---------RHQLPAPK---AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL  278 (289)
T ss_dssp             --HHHHHHHT---------TCCCCCCS---SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred             --HHHHHhhc---------cCCCCCCC---CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence              00000000         00111111   2345678889999999999999999999998866444

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.2e-38  Score=334.41  Aligned_cols=256  Identities=25%  Similarity=0.394  Sum_probs=205.7

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ..++|+..+.||+|+||.||+|... +|+.||||++.....         ....+.+.+|+.+++.++||||+++++++.
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   75 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHENVVKFYGHRR   75 (276)
T ss_dssp             HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGC---------TTHHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccc---------hhhhHHHHHHHHHHHhcCCCCceeeeeEEE
Confidence            4678999999999999999999665 789999999854321         123467889999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      +....++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||.
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~  151 (276)
T 2yex_A           76 EGNIQYLFLEYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGL  151 (276)
T ss_dssp             ETTEEEEEEECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             cCCEEEEEEEecCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCChHHEEEccCCCEEEeeCCC
Confidence            9999999999999999999997653 68999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +...... ..........||+.|+|||.+.+..+ +.++||||||+++|||++|+.||............|...   .  
T Consensus       152 ~~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~---~--  225 (276)
T 2yex_A          152 ATVFRYN-NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK---K--  225 (276)
T ss_dssp             CEECEET-TEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTT---C--
T ss_pred             ccccCCC-cchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhc---c--
Confidence            9765432 11122345678999999999987665 789999999999999999999997643322222222110   0  


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                              ............+.+++.+|++.||++|||+.|++++
T Consensus       226 --------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (276)
T 2yex_A          226 --------TYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (276)
T ss_dssp             --------TTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             --------cccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence                    0001111223456778889999999999999999875

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=6.1e-39  Score=340.57  Aligned_cols=259  Identities=25%  Similarity=0.327  Sum_probs=199.7

Q ss_pred             hcCccCeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE-
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF-  601 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-  601 (840)
                      .|...+.||+|+||.||+|...+    +..||||.+....         .....+.+.+|+.++++++||||+++++++ 
T Consensus        26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   96 (298)
T 3f66_A           26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---------DIGEVSQFLTEGIIMKDFSHPNVLSLLGICL   96 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC---------SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEC
T ss_pred             ehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC---------CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEE
Confidence            46677899999999999997542    2368999885322         123456788999999999999999999986 


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ......++||||+++|+|.+++......+++.++..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||
T Consensus        97 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg  173 (298)
T 3f66_A           97 RSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFG  173 (298)
T ss_dssp             CSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSCG
T ss_pred             cCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEECCCCCEEECccc
Confidence            45567799999999999999998766678999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCC-CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          682 IAKVLQARGG-KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       682 ~a~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      +++....... .........||+.|+|||.+.+..++.++||||+|+++|||++ |.+||......  ......   ...
T Consensus       174 ~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~--~~~~~~---~~~  248 (298)
T 3f66_A          174 LARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYL---LQG  248 (298)
T ss_dssp             GGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTT--THHHHH---HTT
T ss_pred             ccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHH--HHHHHH---hcC
Confidence            9976543211 1123344567889999999999999999999999999999999 55666543211  111100   000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      .       .......   ....+.+++.+|++.||++|||+.|+++.|+++..
T Consensus       249 ~-------~~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  291 (298)
T 3f66_A          249 R-------RLLQPEY---CPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS  291 (298)
T ss_dssp             C-------CCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             C-------CCCCCcc---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            0       0011111   23457778889999999999999999999987644

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.6e-39  Score=341.52  Aligned_cols=258  Identities=24%  Similarity=0.314  Sum_probs=202.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe--
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS--  602 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--  602 (840)
                      ++|+..+.||+|+||.||+|... +|+.||+|++......        ....+.+.+|++++++++||||+++++++.  
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   77 (279)
T 2w5a_A            6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT--------EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR   77 (279)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC--------HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEG
T ss_pred             hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC--------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecC
Confidence            57888899999999999999665 7899999998543211        233567899999999999999999999874  


Q ss_pred             cCccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCC-----eEecCCCCCCEEEcCCCC
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSP-----IIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~Dlk~~Nill~~~~~  674 (840)
                      .....++||||+++++|.+++...   ...+++..++.++.|++.||+|||+   .+     |+||||||+||+++.++.
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~ivH~dl~p~NIl~~~~~~  154 (279)
T 2w5a_A           78 TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR---RSDGGHTVLHRDLKPANVFLDGKQN  154 (279)
T ss_dssp             GGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HC------CCCCCSGGGEEECSSSC
T ss_pred             CCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhc---ccCCCCeeEEeccchhhEEEcCCCC
Confidence            456789999999999999998754   2348999999999999999999999   77     999999999999999999


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +||+|||.++.....   ........||+.|+|||.+.+..++.++||||||+++|||++|+.||....  ....   ..
T Consensus       155 ~kl~dfg~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~---~~  226 (279)
T 2w5a_A          155 VKLGDFGLARILNHD---TSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS--QKEL---AG  226 (279)
T ss_dssp             EEECCCCHHHHC------CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHH---HH
T ss_pred             EEEecCchheeeccc---cccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC--HHHH---HH
Confidence            999999999876431   122234578999999999998899999999999999999999999997531  0100   00


Q ss_pred             hhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      ..       .......+...   ....+.+++.+||+.||++||++.|+++++....+
T Consensus       227 ~i-------~~~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~  274 (279)
T 2w5a_A          227 KI-------REGKFRRIPYR---YSDELNEIITRMLNLKDYHRPSVEEILENPLILEH  274 (279)
T ss_dssp             HH-------HHTCCCCCCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGG
T ss_pred             HH-------hhcccccCCcc---cCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhh
Confidence            00       00000111222   23456778889999999999999999998765443

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=1.1e-38  Score=338.22  Aligned_cols=266  Identities=20%  Similarity=0.198  Sum_probs=201.6

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.++|+..+.||+|+||.||+|.. .+++.||||++.....            ...+.+|+++++.++|++++..++++
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------------~~~~~~e~~~l~~l~~~~~i~~~~~~   73 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK------------HPQLHIESKIYKMMQGGVGIPTIRWC   73 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---------------CCCHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc------------chHHHHHHHHHHHhcCCCCCCeeeee
Confidence            3457899999999999999999965 6789999998643321            12467899999999988877776665


Q ss_pred             -ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE---cCCCCCee
Q 003199          602 -SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQPKV  677 (840)
Q Consensus       602 -~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl  677 (840)
                       ......++||||+ +++|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||++   +.++.+||
T Consensus        74 ~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL  149 (296)
T 4hgt_A           74 GAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYI  149 (296)
T ss_dssp             EEETTEEEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECCGGGTTCEEE
T ss_pred             cCCCCceEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeeeeccCCCCeEEE
Confidence             6677779999999 999999998665679999999999999999999999   999999999999999   78899999


Q ss_pred             ecccchhhhhccCCCC----cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          678 ADFGIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      +|||+++.........    .......||+.|+|||.+.+..++.++|||||||++|||++|+.||........... ..
T Consensus       150 ~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-~~  228 (296)
T 4hgt_A          150 IDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK-YE  228 (296)
T ss_dssp             CCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH-HH
T ss_pred             ecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhh-hh
Confidence            9999998764422111    123456799999999999999999999999999999999999999976432211111 00


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      ........    .........   ....+.+++.+|++.||++|||+.++++.|+++..
T Consensus       229 ~~~~~~~~----~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~  280 (296)
T 4hgt_A          229 RISEKKMS----TPIEVLCKG---YPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  280 (296)
T ss_dssp             HHHHHHHH----SCHHHHTTT---SCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred             hhhccccc----chhhhhhcc---CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            00000000    000000111   13467788889999999999999999999987543

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=4.7e-39  Score=353.59  Aligned_cols=254  Identities=22%  Similarity=0.320  Sum_probs=196.7

Q ss_pred             hcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC--CCCcceeeeEEecC
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR--HKNIVKLYCYFSSL  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~  604 (840)
                      .|...+.||+|+||.||+|...+++.||||++.....        .....+.+.+|+.++++++  ||||+++++++...
T Consensus        57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~  128 (390)
T 2zmd_A           57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--------DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD  128 (390)
T ss_dssp             EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC--------CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc--------cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecC
Confidence            4888899999999999999888899999999854321        1334577899999999996  59999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||| +.+++|.+++.... .+++.++..++.||+.||+|||+   .+|+||||||+|||++ ++.+||+|||+++
T Consensus       129 ~~~~lv~E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~-~~~~kl~DFG~a~  202 (390)
T 2zmd_A          129 QYIYMVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIAN  202 (390)
T ss_dssp             SEEEEEEE-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEES-SSCEEECCCSSSC
T ss_pred             CEEEEEEe-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEEE-CCeEEEEecCccc
Confidence            99999999 56899999998765 78999999999999999999999   9999999999999995 5799999999998


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-----------CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-----------SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      .+... ..........||+.|+|||++.+           ..++.++|||||||++|||++|+.||.....   .. ...
T Consensus       203 ~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~---~~-~~~  277 (390)
T 2zmd_A          203 QMQPD-TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN---QI-SKL  277 (390)
T ss_dssp             CC----------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC---HH-HHH
T ss_pred             cccCC-CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH---HH-HHH
Confidence            76432 11122345679999999999865           4689999999999999999999999975311   10 000


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .......      .....+...   ...+.+++.+||+.||++|||+.|++++-.
T Consensus       278 ~~~~~~~------~~~~~~~~~---~~~~~~li~~~L~~dP~~Rps~~ell~hp~  323 (390)
T 2zmd_A          278 HAIIDPN------HEIEFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLAHPY  323 (390)
T ss_dssp             HHHHCTT------SCCCCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred             HHHhCcc------ccCCCCccc---hHHHHHHHHHHcccChhhCCCHHHHhhCcC
Confidence            0000000      001111122   245677888999999999999999998743

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=2.2e-39  Score=370.82  Aligned_cols=256  Identities=29%  Similarity=0.401  Sum_probs=205.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|.+.++..||||++.....           ..+.|.+|++++++++|+||+++++++.+ .
T Consensus       267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----------~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~  334 (535)
T 2h8h_A          267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----------SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E  334 (535)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-----------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-----------CHHHHHHHHHHHHhCCCCCEeeEEEEEee-c
Confidence            46778889999999999999998888999999854321           13568899999999999999999999876 6


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++|+|.+++... ...+++.++..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+++
T Consensus       335 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~  411 (535)
T 2h8h_A          335 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  411 (535)
T ss_dssp             SCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCTTSTT
T ss_pred             cceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEcccccce
Confidence            789999999999999999753 2358999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .....  .........++..|+|||.+....++.++|||||||++|||++ |+.||.+...  ......           
T Consensus       412 ~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~--~~~~~~-----------  476 (535)
T 2h8h_A          412 LIEDN--EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQ-----------  476 (535)
T ss_dssp             TCCCH--HHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH--HHHHHH-----------
T ss_pred             ecCCC--ceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHH-----------
Confidence            65321  1111223456789999999998899999999999999999999 9999975311  111100           


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                        +...............+.+++.+||+.||++|||+.++++.|+++...
T Consensus       477 --i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~  524 (535)
T 2h8h_A          477 --VERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  524 (535)
T ss_dssp             --HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred             --HHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence              000000011112334577788899999999999999999999987543

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.2e-39  Score=348.76  Aligned_cols=267  Identities=24%  Similarity=0.245  Sum_probs=202.2

Q ss_pred             HHHHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          521 QREILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       521 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ..++.++|...+.||+|+||.||+|.. .+++.||||++.......     ......+.+.+|++++++++||||+++++
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----~~~~~~~~~~~E~~~l~~l~hpniv~~~~   95 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQ-----INPKDVERIKTEVRLMKKLHHPNIARLYE   95 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC--------CHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcc-----cCHHHHHHHHHHHHHHHhCCCCCcceeeh
Confidence            357788999999999999999999965 578999999985432110     01233567899999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcC---------------------------------------CCCCChHHHHHHHH
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKG---------------------------------------LVHLDWPTRHKIAF  640 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~---------------------------------------~~~~~~~~~~~i~~  640 (840)
                      ++.+....++||||+++|+|.+++...                                       ...+++..++.++.
T Consensus        96 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (345)
T 3hko_A           96 VYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMR  175 (345)
T ss_dssp             EEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHH
T ss_pred             hhccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHH
Confidence            999999999999999999999988521                                       11235677889999


Q ss_pred             HHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC--CCeeecccchhhhhccCCC-CcceecccccccccCcccccc--CC
Q 003199          641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY--QPKVADFGIAKVLQARGGK-DSTTTVIAGTYGYLAPEYAYS--SK  715 (840)
Q Consensus       641 ~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~--~~kl~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~--~~  715 (840)
                      |++.||+|||+   .+|+||||||+||+++.++  .+||+|||+++.+...... ........||+.|+|||.+.+  ..
T Consensus       176 qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  252 (345)
T 3hko_A          176 QIFSALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNES  252 (345)
T ss_dssp             HHHHHHHHHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSC
T ss_pred             HHHHHHHHHHH---CCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCC
Confidence            99999999999   9999999999999998776  8999999999876442221 223345679999999999865  67


Q ss_pred             CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCC
Q 003199          716 ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPA  795 (840)
Q Consensus       716 ~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~  795 (840)
                      ++.++||||||+++|||++|+.||......     ...........       ....+.+......+.+++.+|++.||.
T Consensus       253 ~~~~~DiwslG~il~el~~g~~pf~~~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~li~~~l~~~p~  320 (345)
T 3hko_A          253 YGPKCDAWSAGVLLHLLLMGAVPFPGVNDA-----DTISQVLNKKL-------CFENPNYNVLSPLARDLLSNLLNRNVD  320 (345)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHHHHCCC-------CTTSGGGGGSCHHHHHHHHHHSCSCTT
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCCCCCChH-----HHHHHHHhccc-------ccCCcccccCCHHHHHHHHHHcCCChh
Confidence            899999999999999999999999753110     00000000000       000111122345677888899999999


Q ss_pred             CCCCHHHHHHHh
Q 003199          796 TRPTMNEVVQLL  807 (840)
Q Consensus       796 ~Rps~~evl~~L  807 (840)
                      +||++.|++++-
T Consensus       321 ~Rps~~~~l~hp  332 (345)
T 3hko_A          321 ERFDAMRALQHP  332 (345)
T ss_dssp             TSCCHHHHHHSH
T ss_pred             HCCCHHHHhcCh
Confidence            999999999863

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=3.9e-39  Score=345.22  Aligned_cols=260  Identities=25%  Similarity=0.335  Sum_probs=205.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCccee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKL  597 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l  597 (840)
                      .++|...+.||+|+||.||+|..      .+++.||||++....         .....+.+.+|+.++.++ +||||+++
T Consensus        26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA---------THSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC---------CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC---------CcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            35788899999999999999963      356899999985432         123346788999999999 69999999


Q ss_pred             eeEEecCc-cceEEEeecCCCChHHHhhcCCCC---------------CChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          598 YCYFSSLY-CNLLVYEYMPNGNLWDALHKGLVH---------------LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       598 ~~~~~~~~-~~~lV~e~~~~gsL~~~l~~~~~~---------------~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      ++++.... ..++||||+++|+|.+++......               +++..+..++.|++.||+|||+   ++|+|||
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~d  173 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRD  173 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh---CCccccc
Confidence            99987654 489999999999999999875422               7899999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+||+++.++.+||+|||+++..... ..........||+.|+|||++.+..++.++||||||+++|||++ |+.||.
T Consensus       174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~  252 (316)
T 2xir_A          174 LAARNILLSEKNVVKICDFGLARDIYKD-PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP  252 (316)
T ss_dssp             CSGGGEEECGGGCEEECCCGGGSCTTTC-TTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CccceEEECCCCCEEECCCccccccccC-ccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCc
Confidence            9999999999999999999999876432 12223345568899999999999999999999999999999998 999997


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ...... .....  ...        .........   ....+.+++.+||+.||++|||+.|++++|+++.
T Consensus       253 ~~~~~~-~~~~~--~~~--------~~~~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  309 (316)
T 2xir_A          253 GVKIDE-EFCRR--LKE--------GTRMRAPDY---TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL  309 (316)
T ss_dssp             TCCCSH-HHHHH--HHH--------TCCCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ccchhH-HHHHH--hcc--------CccCCCCCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            532111 11000  000        000111111   2345777888999999999999999999998653

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=7.3e-39  Score=342.01  Aligned_cols=267  Identities=21%  Similarity=0.303  Sum_probs=198.6

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..+|...+.||+|+||.||+|.. .+|+.||||++.....       ........+.+|+.++++++||||+++++++..
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~  103 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDL-------MDAKARADCIKEIDLLKQLNHPNVIKYYASFIE  103 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSS-------CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhc-------cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc
Confidence            35788899999999999999965 5799999999854221       113345678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      ....++||||+++|+|.+++..   ....+++..++.++.|++.||+|||+   .+++||||||+||+++.++.+||+||
T Consensus       104 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIl~~~~~~~kl~Df  180 (310)
T 2wqm_A          104 DNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDL  180 (310)
T ss_dssp             TTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC
T ss_pred             CCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCcHHHEEEcCCCCEEEEec
Confidence            9999999999999999998864   23468999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |+++.....   ........|++.|+|||.+.+..++.++||||||+++|||++|+.||......   ............
T Consensus       181 g~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~~  254 (310)
T 2wqm_A          181 GLGRFFSSK---TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKIEQCD  254 (310)
T ss_dssp             ---------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC---HHHHHHHHHTTC
T ss_pred             cceeeecCC---CccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh---HHHHHHHhhccc
Confidence            999876431   12233457899999999999989999999999999999999999999753211   111111000000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCC
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFE  816 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~  816 (840)
                            .......   .....+.+++.+||+.||++|||+.++++.|+++.+...+
T Consensus       255 ------~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~  301 (310)
T 2wqm_A          255 ------YPPLPSD---HYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTAS  301 (310)
T ss_dssp             ------SCCCCTT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred             ------CCCCccc---ccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhh
Confidence                  0000011   1234567788899999999999999999999987655443

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.5e-39  Score=363.11  Aligned_cols=254  Identities=23%  Similarity=0.285  Sum_probs=194.9

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++......       .......+.+|+.+++.++||||+++++++.+
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-------~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  219 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIV-------AKDEVAHTLTENRVLQNSRHPFLTALKYSFQT  219 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC--------------------CCCCCSCTTSCCEEEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhh-------hhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee
Confidence            35788899999999999999965 57999999998543211       12234567789999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .+..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+.  ++|+||||||+|||++.++.+||+|||+|
T Consensus       220 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~--~giiHrDlkp~NIll~~~~~~kl~DFG~a  296 (446)
T 4ejn_A          220 HDRLCFVMEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLC  296 (446)
T ss_dssp             TTEEEEEECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCCCCGGGEEECSSSCEEECCCCCC
T ss_pred             CCEEEEEEeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhc--CCEEECCCCHHHEEECCCCCEEEccCCCc
Confidence            999999999999999999997764 689999999999999999999962  68999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +....   .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  .   .........    
T Consensus       297 ~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~---~~~~~i~~~----  364 (446)
T 4ejn_A          297 KEGIK---DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--E---KLFELILME----  364 (446)
T ss_dssp             CTTCC--------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--H---HHHHHHHHC----
T ss_pred             eeccC---CCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH--H---HHHHHHHhC----
Confidence            76432   22234457899999999999999999999999999999999999999975311  1   111100000    


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHh
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQLL  807 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~L  807 (840)
                          ....+...   ...+.+++.+|++.||++||     +++|+++|-
T Consensus       365 ----~~~~p~~~---~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp  406 (446)
T 4ejn_A          365 ----EIRFPRTL---GPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHR  406 (446)
T ss_dssp             ----CCCCCTTS---CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSG
T ss_pred             ----CCCCCccC---CHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCc
Confidence                01112222   34567788899999999999     999999863

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-38  Score=337.78  Aligned_cols=259  Identities=23%  Similarity=0.294  Sum_probs=201.0

Q ss_pred             cCccCeeeccCCcEEEEEEeC-CC---cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          528 MTEKNKVGQGGSGTVYKIDLN-SG---EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~-~~---~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      |...+.||+|+||+||+|... ++   ..||+|++....         .....+.+.+|+.++++++||||+++++++.+
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   93 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT---------EMQQVEAFLREGLLMRGLNHPNVLALIGIMLP   93 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC---------SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc---------cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec
Confidence            445678999999999999653 23   379999984322         12345678899999999999999999999977


Q ss_pred             Cccc-eEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          604 LYCN-LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       604 ~~~~-~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      .+.. ++||||+.+|+|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        94 ~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~  170 (298)
T 3pls_A           94 PEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGL  170 (298)
T ss_dssp             SSSCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTTS
T ss_pred             CCCCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCCC
Confidence            6655 89999999999999998866678999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCC-CCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          683 AKVLQARGG-KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       683 a~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ++....... .........+|+.|+|||.+.+..++.++||||||+++|||++|..|+..... .........   ..  
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~-~~~~~~~~~---~~--  244 (298)
T 3pls_A          171 ARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHID-PFDLTHFLA---QG--  244 (298)
T ss_dssp             SCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC-GGGHHHHHH---TT--
T ss_pred             cccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCC-HHHHHHHhh---cC--
Confidence            976543211 11233445688999999999999999999999999999999996655433211 111111100   00  


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                           .......   .....+.+++.+|++.||.+|||+.++++.|+++..
T Consensus       245 -----~~~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~  287 (298)
T 3pls_A          245 -----RRLPQPE---YCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVS  287 (298)
T ss_dssp             -----CCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -----CCCCCCc---cchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence                 0001111   123457778889999999999999999999987643

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=3.5e-38  Score=343.85  Aligned_cols=260  Identities=26%  Similarity=0.417  Sum_probs=207.0

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeee
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYC  599 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~  599 (840)
                      ..+.++|...+.||+|+||.||+|... +|+.||||++.......  .........+.+.+|+.+++++ .||||+++++
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~--~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  167 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERL--SPEQLEEVREATRRETHILRQVAGHPHIITLID  167 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCC--CHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEcccccc--CHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence            456678999999999999999999765 79999999985543221  1122334467789999999999 7999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      ++......++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .||+||||||+||+++.++.+||+|
T Consensus       168 ~~~~~~~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~~~ikl~D  243 (365)
T 2y7j_A          168 SYESSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSD  243 (365)
T ss_dssp             EEEBSSEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECC
T ss_pred             EEeeCCEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEEe
Confidence            9999999999999999999999998654 68999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCcccccc------CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS------SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      ||++..+..    ........||+.|+|||++.+      ..++.++|||||||++|||++|+.||....    ..... 
T Consensus       244 fG~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~----~~~~~-  314 (365)
T 2y7j_A          244 FGFSCHLEP----GEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR----QILML-  314 (365)
T ss_dssp             CTTCEECCT----TCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHHHH-
T ss_pred             cCcccccCC----CcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC----HHHHH-
Confidence            999976643    222345679999999998853      358899999999999999999999996531    11000 


Q ss_pred             hhhhccccchhhhcccccCCC---cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          754 SIKVDTKEGIMEVLDKKLSGS---FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..          +........   +......+.+++.+|++.||++|||+.|++++
T Consensus       315 ~~----------i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  360 (365)
T 2y7j_A          315 RM----------IMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH  360 (365)
T ss_dssp             HH----------HHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HH----------HHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            00          000000000   01123457788889999999999999999985

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.1e-38  Score=335.98  Aligned_cols=258  Identities=25%  Similarity=0.323  Sum_probs=201.9

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|... +|+.||||++.........    .....+.+.+|+.++++++||||+++++++.+
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   79 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSR----RGVSREEIEREVNILREIRHPNIITLHDIFEN   79 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCS----SSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccc----cchHHHHHHHHHHHHHhCCCCCeeehhheecC
Confidence            467899999999999999999665 7999999998654422111    11224678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC----CCeeec
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY----QPKVAD  679 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~D  679 (840)
                      ....++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+++||||||+||+++.++    .+||+|
T Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~~kl~d  155 (283)
T 3bhy_A           80 KTDVVLILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLID  155 (283)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCCEEECC
T ss_pred             CCeEEEEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCceEEEe
Confidence            999999999999999999997654 68999999999999999999999   9999999999999998877    799999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ||++.....    ........||+.|+|||.+.+..++.++||||||+++|||++|+.||.....    ...+.... ..
T Consensus       156 fg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~-~~  226 (283)
T 3bhy_A          156 FGIAHKIEA----GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK----QETLTNIS-AV  226 (283)
T ss_dssp             CTTCEECC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHHHH-TT
T ss_pred             cccceeccC----CCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch----HHHHHHhH-hc
Confidence            999976532    2223445689999999999988999999999999999999999999975311    00010000 00


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..    ......   .......+.+++.+|++.||++|||+.|++++
T Consensus       227 ~~----~~~~~~---~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  266 (283)
T 3bhy_A          227 NY----DFDEEY---FSNTSELAKDFIRRLLVKDPKRRMTIAQSLEH  266 (283)
T ss_dssp             CC----CCCHHH---HTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred             cc----CCcchh---cccCCHHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence            00    000000   01123457788889999999999999999985

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.4e-38  Score=355.35  Aligned_cols=354  Identities=19%  Similarity=0.169  Sum_probs=288.4

Q ss_pred             CCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEE
Q 003199           19 LRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLE   98 (840)
Q Consensus        19 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   98 (840)
                      -+.++.++++++ .+|..+.  ++|+.|+|++|   .+..+++..|..+++|++|+|++|.+.+..|..|.++++|++|+
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   86 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKN---RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG   86 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC--TTCSEEECCSS---CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCC---ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence            468999999999 7787664  68999999999   77888888999999999999999999999999999999999999


Q ss_pred             ccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccc
Q 003199           99 LTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS  178 (840)
Q Consensus        99 L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  178 (840)
                      |++|+++...+..|..+++|++|+|++|+ +.+..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++
T Consensus        87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           87 LRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            99999997666789999999999999998 56667888999999999999999999888999999999999999999999


Q ss_pred             cccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccc
Q 003199          179 GEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLA  258 (840)
Q Consensus       179 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  258 (840)
                      +..+..|.++++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.++..                        ..
T Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------------------~~  221 (477)
T 2id5_A          166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN------------------------CL  221 (477)
T ss_dssp             SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT------------------------TT
T ss_pred             ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc------------------------cc
Confidence            888888999999999999999999888889999999999999998876544432                        22


Q ss_pred             cccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEE
Q 003199          259 RCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKI  338 (840)
Q Consensus       259 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  338 (840)
                      ...+|++|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|+.|
T Consensus       222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred             cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence            23467777777777774333566777788888888888877777777778888888888888887777788888888888


Q ss_pred             EcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc
Q 003199          339 DLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL  404 (840)
Q Consensus       339 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  404 (840)
                      +|++|+|++..+..|..+++|+.|+|++|++....+. ..-...+..+++.++...+.-|..+...
T Consensus       302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~~~g~  366 (477)
T 2id5_A          302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATPEFVQGK  366 (477)
T ss_dssp             ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEESGGGTTC
T ss_pred             ECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch-HhHHhhhhccccCccCceeCCchHHcCC
Confidence            8888888866666777888888888888888643221 1112233445556666665556554433

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.1e-39  Score=346.83  Aligned_cols=274  Identities=24%  Similarity=0.294  Sum_probs=199.5

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ....++|...+.||+|+||.||+|... +|+.||||++.......     ......+.+.+|+++++.++||||++++++
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   80 (346)
T 1ua2_A            6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSE-----AKDGINRTALREIKLLQELSHPNIIGLLDA   80 (346)
T ss_dssp             -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC-----------------CTHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcch-----hhhhhhHHHHHHHHHHhhCCCCCCCeEEEE
Confidence            445678999999999999999999765 68999999985432111     111123467889999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +.+....++||||+++ +|.+++......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        81 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Df  156 (346)
T 1ua2_A           81 FGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADF  156 (346)
T ss_dssp             ECCTTCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCC
T ss_pred             EeeCCceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCCCEEEEec
Confidence            9999999999999975 8999888776678999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh-hhc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI-KVD  758 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-~~~  758 (840)
                      |+++.....   ........||+.|+|||.+.+. .++.++|||||||++|||++|.+||.+.... ......... ...
T Consensus       157 g~a~~~~~~---~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~-~~~~~i~~~~~~~  232 (346)
T 1ua2_A          157 GLAKSFGSP---NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL-DQLTRIFETLGTP  232 (346)
T ss_dssp             GGGSTTTSC---CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCC
T ss_pred             ccceeccCC---cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHcCCC
Confidence            999876432   2233456789999999998654 5899999999999999999999998753210 000000000 000


Q ss_pred             cccchhhh------cc-cccCCCc-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          759 TKEGIMEV------LD-KKLSGSF-----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       759 ~~~~~~~~------~~-~~~~~~~-----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ........      .. .......     ......+.+++.+|++.||++|||+.|++++-.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~  294 (346)
T 1ua2_A          233 TEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKY  294 (346)
T ss_dssp             CTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGG
T ss_pred             ChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChh
Confidence            00000000      00 0000000     122356788888999999999999999999854

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=1.8e-38  Score=336.57  Aligned_cols=266  Identities=20%  Similarity=0.191  Sum_probs=204.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE-ec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF-SS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~  603 (840)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++.....            .+.+.+|+.+++.++|++++..+.++ ..
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------------~~~~~~e~~~l~~l~~~~~i~~~~~~~~~   76 (296)
T 3uzp_A            9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK------------HPQLHIESKIYKMMQGGVGIPTIRWCGAE   76 (296)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS------------CCHHHHHHHHHHHHTTSTTCCCEEEEEEE
T ss_pred             cEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc------------hhHHHHHHHHHHHhhcCCCCCccccccCC
Confidence            5688889999999999999965 6799999999854321            12477899999999988877766655 55


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE---cCCCCCeeecc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQPKVADF  680 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~Df  680 (840)
                      ....++||||+ +++|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||++   +.++.+||+||
T Consensus        77 ~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Df  152 (296)
T 3uzp_A           77 GDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDF  152 (296)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCC
T ss_pred             CCceEEEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeC
Confidence            67779999999 999999998665679999999999999999999999   999999999999999   48889999999


Q ss_pred             cchhhhhccCCCC----cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          681 GIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       681 g~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |+++.........    .......||+.|+|||.+.+..++.++|||||||++|||++|+.||........... +....
T Consensus       153 g~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-~~~~~  231 (296)
T 3uzp_A          153 GLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK-YERIS  231 (296)
T ss_dssp             TTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH-HHHHH
T ss_pred             CCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhh-hhhhc
Confidence            9998764422111    123456799999999999999999999999999999999999999976432211110 00000


Q ss_pred             hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                      .....    .........   ....+.+++.+||+.||++|||+.++++.|+++.....
T Consensus       232 ~~~~~----~~~~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~  283 (296)
T 3uzp_A          232 EKKMS----TPIEVLCKG---YPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             HHHHH----SCHHHHTTT---SCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             ccccC----CchHHHHhh---CCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence            00000    000001111   22457778889999999999999999999987654443

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=9e-39  Score=343.91  Aligned_cols=261  Identities=25%  Similarity=0.308  Sum_probs=202.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|...+.||+|+||.||+|..      .+++.||||++....         .......+.+|+.++++++||||+++++
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~  100 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---------SEQDELDFLMEALIISKFNHQNIVRCIG  100 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC---------CHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc---------chhhHHHHHHHHHHHhhCCCCCCCeEEE
Confidence            5788899999999999999963      357799999984322         1233457889999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC--
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV--  671 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~--  671 (840)
                      ++......++||||+++|+|.+++....      ..+++..++.++.|++.||+|||+   .+|+||||||+||+++.  
T Consensus       101 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~i~H~dlkp~NIli~~~~  177 (327)
T 2yfx_A          101 VSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPG  177 (327)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSS
T ss_pred             EEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeecCcCCHhHEEEecCC
Confidence            9999999999999999999999998653      358999999999999999999999   99999999999999984  


Q ss_pred             -CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcch
Q 003199          672 -NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNI  749 (840)
Q Consensus       672 -~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~  749 (840)
                       +..+||+|||+++...... .........||+.|+|||.+.+..++.++||||||+++|||++ |+.||....  ....
T Consensus       178 ~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~  254 (327)
T 2yfx_A          178 PGRVAKIGDFGMARDIYRAS-YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS--NQEV  254 (327)
T ss_dssp             TTCCEEECCCHHHHHHHC-------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--HHHH
T ss_pred             CcceEEECcccccccccccc-ccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcC--HHHH
Confidence             4469999999998764321 1223345568899999999988899999999999999999998 999987531  1111


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCC
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR  814 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~  814 (840)
                      ....   ...       .......   .....+.+++.+||+.||++||++.+++++|+.+....
T Consensus       255 ~~~~---~~~-------~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          255 LEFV---TSG-------GRMDPPK---NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             HHHH---HTT-------CCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             HHHH---hcC-------CCCCCCC---CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence            1110   000       0011111   22345677888999999999999999999998765443

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=6.6e-39  Score=343.40  Aligned_cols=265  Identities=23%  Similarity=0.334  Sum_probs=194.6

Q ss_pred             HhcCcc-CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          526 EAMTEK-NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       526 ~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      +.|... +.||+|+||.||+|.. .+++.||||++.....          ...+.+.+|++++.++ +||||+++++++.
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----------~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~   81 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG----------HIRSRVFREVEMLYQCQGHRNVLELIEFFE   81 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS----------CCHHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc----------hhHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            356653 6799999999999965 4799999999854321          1245688899999885 7999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC---Ceeec
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ---PKVAD  679 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~D  679 (840)
                      +....++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.   +||+|
T Consensus        82 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~D  157 (316)
T 2ac3_A           82 EEDRFYLVFEKMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICD  157 (316)
T ss_dssp             ETTEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECC
T ss_pred             eCCEEEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEE
Confidence            9999999999999999999998764 68999999999999999999999   99999999999999998776   89999


Q ss_pred             ccchhhhhccCCC----CcceecccccccccCcccccc-----CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchh
Q 003199          680 FGIAKVLQARGGK----DSTTTVIAGTYGYLAPEYAYS-----SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII  750 (840)
Q Consensus       680 fg~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~  750 (840)
                      ||+++.....+..    ........||+.|+|||++.+     ..++.++|||||||++|||++|+.||.........  
T Consensus       158 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~--  235 (316)
T 2ac3_A          158 FDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCG--  235 (316)
T ss_dssp             TTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSC--
T ss_pred             ccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccc--
Confidence            9999765432111    112234569999999999865     56889999999999999999999999764322110  


Q ss_pred             hhhhhhhc---cccchhhhcccccCC---CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          751 YWVSIKVD---TKEGIMEVLDKKLSG---SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       751 ~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                       |......   .......+......-   ........+.+++.+|++.||++|||+.|++++-
T Consensus       236 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp  297 (316)
T 2ac3_A          236 -WDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHP  297 (316)
T ss_dssp             -C----CCHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHST
T ss_pred             -ccccccchhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcCh
Confidence             1000000   000000011111100   0011235677888999999999999999999863

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.3e-37  Score=351.59  Aligned_cols=347  Identities=25%  Similarity=0.345  Sum_probs=301.9

Q ss_pred             cCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCC
Q 003199           38 FNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKN  117 (840)
Q Consensus        38 ~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~  117 (840)
                      ..+++|+.|++++|   .+..++.  +..+++|++|+|++|.+++..+  ++++++|++|+|++|.+++..+  +..+++
T Consensus        43 ~~l~~l~~L~l~~~---~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~  113 (466)
T 1o6v_A           43 TDLDQVTTLQADRL---GIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTN  113 (466)
T ss_dssp             HHHHTCCEEECCSS---CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred             hHhccccEEecCCC---CCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCC
Confidence            45788999999999   5566653  8889999999999999986644  9999999999999999995544  999999


Q ss_pred             CCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEcc
Q 003199          118 LRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLY  197 (840)
Q Consensus       118 L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  197 (840)
                      |++|+|++|+ +. .++. +..+++|++|++++|.+++. + .+..+++|+.|+++ |.+.+..  .+.++++|++|+++
T Consensus       114 L~~L~L~~n~-l~-~~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          114 LTGLTLFNNQ-IT-DIDP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDIS  185 (466)
T ss_dssp             CCEEECCSSC-CC-CCGG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECC
T ss_pred             CCEEECCCCC-CC-CChH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECc
Confidence            9999999997 33 3443 89999999999999999953 3 58999999999997 5565443  38999999999999


Q ss_pred             CCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccC
Q 003199          198 DNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSI  277 (840)
Q Consensus       198 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  277 (840)
                      +|+++..  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..
T Consensus       186 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~  259 (466)
T 1o6v_A          186 SNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA  259 (466)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             CCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch
Confidence            9999854  458899999999999999997765  77889999999999999864  46889999999999999998654


Q ss_pred             CccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCcc
Q 003199          278 PEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLK  357 (840)
Q Consensus       278 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  357 (840)
                      +  +..+++|+.|++++|++++..+  +..+++|+.|+|++|++++..+  +..+++|+.|+|++|++++..|  +..++
T Consensus       260 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~  331 (466)
T 1o6v_A          260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT  331 (466)
T ss_dssp             G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred             h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc
Confidence            4  8899999999999999997655  8899999999999999997655  7899999999999999997766  78999


Q ss_pred             ccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCCCCcCc
Q 003199          358 KLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGP  419 (840)
Q Consensus       358 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~  419 (840)
                      +|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+ .++.|++++|++++.
T Consensus       332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            999999999999865  478999999999999999998887  5555 568999999999973

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=9.3e-39  Score=342.40  Aligned_cols=263  Identities=22%  Similarity=0.301  Sum_probs=201.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe--
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS--  602 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--  602 (840)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++....          ....+.+.+|+++++.++||||+++++++.  
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   98 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE----------QQDREEAQREADMHRLFNHPNILRLVAYCLRE   98 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS----------HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC----------HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec
Confidence            4688899999999999999965 579999999884322          234567889999999999999999999986  


Q ss_pred             --cCccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          603 --SLYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       603 --~~~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                        .....++||||+++|+|.+++..   ....+++.+++.++.|++.||+|||+   .+|+||||||+||+++.++.+||
T Consensus        99 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl  175 (317)
T 2buj_A           99 RGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVL  175 (317)
T ss_dssp             ETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEE
T ss_pred             cCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEE
Confidence              34467899999999999998876   23468999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCC------cceecccccccccCccccccCC---CCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          678 ADFGIAKVLQARGGKD------STTTVIAGTYGYLAPEYAYSSK---ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                      +|||++..........      .......||+.|+|||.+.+..   ++.++||||||+++|||++|+.||.........
T Consensus       176 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~  255 (317)
T 2buj_A          176 MDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDS  255 (317)
T ss_dssp             CCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSC
T ss_pred             EecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccch
Confidence            9999886542210000      0112345799999999987554   688999999999999999999998532111111


Q ss_pred             hhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCC
Q 003199          749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCR  814 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~  814 (840)
                      .....             ......+........+.+++.+||+.||.+|||+.+++++|+.+.+..
T Consensus       256 ~~~~~-------------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~  308 (317)
T 2buj_A          256 VALAV-------------QNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPA  308 (317)
T ss_dssp             HHHHH-------------HCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCC
T ss_pred             hhHHh-------------hccCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCC
Confidence            11000             000000111122346778888999999999999999999999886543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=7.9e-39  Score=344.34  Aligned_cols=259  Identities=26%  Similarity=0.350  Sum_probs=201.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEE--EEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVV--AVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~v--avK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      ++|...+.||+|+||.||+|... +|..+  |||++.....         ....+.+.+|+++++++ +||||+++++++
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~---------~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~   95 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS---------KDDHRDFAGELEVLCKLGHHPNIINLLGAC   95 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------------CHHHHHHHHHTTCCCCTTBCCEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccc---------hHHHHHHHHHHHHHHhccCCCchhhhceee
Confidence            56788899999999999999654 56654  9998853221         12345688999999999 899999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCC
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTN  666 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~N  666 (840)
                      .+....++||||+++|+|.+++....               ..+++..++.++.|++.||+|||+   ++|+||||||+|
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~N  172 (327)
T 1fvr_A           96 EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARN  172 (327)
T ss_dssp             EETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGG
T ss_pred             eeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCccce
Confidence            99999999999999999999997653               368999999999999999999999   999999999999


Q ss_pred             EEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCC
Q 003199          667 ILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGD  745 (840)
Q Consensus       667 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~  745 (840)
                      |+++.++.+||+|||+++....    ........+++.|+|||.+.+..++.++||||||+++|||++ |+.||..... 
T Consensus       173 Il~~~~~~~kL~Dfg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-  247 (327)
T 1fvr_A          173 ILVGENYVAKIADFGLSRGQEV----YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-  247 (327)
T ss_dssp             EEECGGGCEEECCTTCEESSCE----ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH-
T ss_pred             EEEcCCCeEEEcccCcCccccc----cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH-
Confidence            9999999999999999874322    122234567889999999988889999999999999999998 9999975311 


Q ss_pred             CcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          746 NKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                          ...... .      ..........   .....+.+++.+|++.||++|||+.|++++|.++...+.
T Consensus       248 ----~~~~~~-~------~~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  303 (327)
T 1fvr_A          248 ----AELYEK-L------PQGYRLEKPL---NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  303 (327)
T ss_dssp             ----HHHHHH-G------GGTCCCCCCT---TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             ----HHHHHH-h------hcCCCCCCCC---CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence                011100 0      0000011111   223457778889999999999999999999987655544

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=9.5e-39  Score=343.38  Aligned_cols=260  Identities=21%  Similarity=0.272  Sum_probs=202.5

Q ss_pred             HHHHHHhcCcc-CeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCccee
Q 003199          521 QREILEAMTEK-NKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKL  597 (840)
Q Consensus       521 ~~~~~~~~~~~-~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l  597 (840)
                      ...+.+.|... +.||+|+||.||+|... +|+.||||++......        ......+.+|+.++..+. ||||+++
T Consensus        23 ~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~~~e~~~l~~l~~~~~iv~~   94 (327)
T 3lm5_A           23 MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRG--------QDCRAEILHEIAVLELAKSCPRVINL   94 (327)
T ss_dssp             HHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETT--------EECHHHHHHHHHHHHHTTTCTTBCCE
T ss_pred             HHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcc--------hHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            34566777776 88999999999999655 7999999998544321        122457889999999995 6999999


Q ss_pred             eeEEecCccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---CC
Q 003199          598 YCYFSSLYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---NY  673 (840)
Q Consensus       598 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~  673 (840)
                      ++++.+....++||||+++|+|.+++... ...+++.++..++.|++.||+|||+   .+|+||||||+||+++.   ++
T Consensus        95 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl~~~~~~~~  171 (327)
T 3lm5_A           95 HEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLG  171 (327)
T ss_dssp             EEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESCBTTBC
T ss_pred             EEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCChHHEEEecCCCCC
Confidence            99999999999999999999999998654 3468999999999999999999999   99999999999999987   78


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      .+||+|||+++....    ........||+.|+|||++.+..++.++||||||+++|||++|+.||.....    .....
T Consensus       172 ~~kL~Dfg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~  243 (327)
T 3lm5_A          172 DIKIVDFGMSRKIGH----ACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDN----QETYL  243 (327)
T ss_dssp             CEEECCGGGCEEC-------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHH
T ss_pred             cEEEeeCccccccCC----ccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc----hHHHH
Confidence            999999999986632    2223446799999999999999999999999999999999999999975311    00000


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ...        ..........+......+.+++.+|++.||++|||++|++++-
T Consensus       244 ~i~--------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~  289 (327)
T 3lm5_A          244 NIS--------QVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHS  289 (327)
T ss_dssp             HHH--------HTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCG
T ss_pred             HHH--------hcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCH
Confidence            000        0000011111222345567788899999999999999999874

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=344.79  Aligned_cols=248  Identities=15%  Similarity=0.143  Sum_probs=197.2

Q ss_pred             HhcCccCeeeccCCcEEEEE------EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC---CCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKI------DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR---HKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~------~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~  596 (840)
                      +.|...+.||+|+||+||+|      ...+++.||||++....             ...+..|+++++.++   |+|+++
T Consensus        65 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-------------~~~~~~e~~~~~~l~~~~~~~iv~  131 (365)
T 3e7e_A           65 KLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN-------------PWEFYIGTQLMERLKPSMQHMFMK  131 (365)
T ss_dssp             SEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC-------------HHHHHHHHHHHHHSCGGGGGGBCC
T ss_pred             EEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC-------------hhHHHHHHHHHHHhhhhhhhhhhh
Confidence            46778889999999999999      45578999999984322             235667777777776   999999


Q ss_pred             eeeEEecCccceEEEeecCCCChHHHhhc----CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-
Q 003199          597 LYCYFSSLYCNLLVYEYMPNGNLWDALHK----GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-  671 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~~~~gsL~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-  671 (840)
                      +++++...+..++||||+++|+|.+++..    ....++|..+..++.|++.||+|||+   ++||||||||+|||++. 
T Consensus       132 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiKp~NIll~~~  208 (365)
T 3e7e_A          132 FYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNG  208 (365)
T ss_dssp             EEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECGG
T ss_pred             hheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEeccc
Confidence            99999999999999999999999999974    23469999999999999999999999   99999999999999998 


Q ss_pred             ----------CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCC
Q 003199          672 ----------NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED  741 (840)
Q Consensus       672 ----------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  741 (840)
                                ++.+||+|||+|+.+... ..........||+.|+|||++.+..++.++|||||||++|||+||+.||..
T Consensus       209 ~~~~~~~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  287 (365)
T 3e7e_A          209 FLEQDDEDDLSAGLALIDLGQSIDMKLF-PKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVK  287 (365)
T ss_dssp             GTCC------CTTEEECCCTTCEEGGGS-CTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             ccCccccccccCCEEEeeCchhhhhhcc-CCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCcccc
Confidence                      899999999999765432 223344567799999999999999999999999999999999999999854


Q ss_pred             CCCCCcchhhhhhhhhccccchhhhcccccCC-CcHHHHHHHHHHHHHccCCCCCCC-CCHHHHHHHhhhcC
Q 003199          742 DFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSG-SFRDEMIQVLRIAIRCTSKSPATR-PTMNEVVQLLAEAD  811 (840)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~R-ps~~evl~~L~~~~  811 (840)
                      ......              .    ....... ...+   .+.+++..|+..+|.+| |+++++.+.|+++-
T Consensus       288 ~~~~~~--------------~----~~~~~~~~~~~~---~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l  338 (365)
T 3e7e_A          288 NEGGEC--------------K----PEGLFRRLPHLD---MWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVF  338 (365)
T ss_dssp             EETTEE--------------E----ECSCCTTCSSHH---HHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCce--------------e----echhccccCcHH---HHHHHHHHHcCCCCCCcchHHHHHHHHHHHHH
Confidence            211100              0    0111111 1223   34456668999999999 57888888887653

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.3e-38  Score=361.55  Aligned_cols=257  Identities=26%  Similarity=0.336  Sum_probs=203.5

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ..+.++|...+.||+|+||+||+|... +|+.||||++......        ......+.+|++++++++||||++++++
T Consensus        18 g~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~~~E~~~l~~l~hpniv~~~~~   89 (486)
T 3mwu_A           18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK--------NKDTSTILREVELLKKLDHPNIMKLFEI   89 (486)
T ss_dssp             CHHHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHB--------CSCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             CChhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEeccccc--------chHHHHHHHHHHHHHhCCCCCcCeEEEE
Confidence            356788999999999999999999654 7999999998543211        1124678899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc---CCCCCee
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD---VNYQPKV  677 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl  677 (840)
                      +.+....++||||+++|+|.+.+.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++   .++.+||
T Consensus        90 ~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl  165 (486)
T 3mwu_A           90 LEDSSSFYIVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKI  165 (486)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEESSSSTTCCEEE
T ss_pred             EEcCCEEEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEE
Confidence            999999999999999999999887654 68999999999999999999999   9999999999999995   4567999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +|||+++....    ........||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+...  ...   .....
T Consensus       166 ~Dfg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~---~~~i~  235 (486)
T 3mwu_A          166 IDFGLSTCFQQ----NTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDI---LKRVE  235 (486)
T ss_dssp             CSCSCTTTBCC----C----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHH---HHHHH
T ss_pred             EECCcCeECCC----CCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHH---HHHHH
Confidence            99999986632    223345679999999998875 589999999999999999999999975311  111   00000


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ....      . ...+.+......+.+++.+|++.||++|||+.|++++-
T Consensus       236 ~~~~------~-~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp  278 (486)
T 3mwu_A          236 TGKY------A-FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHP  278 (486)
T ss_dssp             HTCC------C-SCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCH
T ss_pred             hCCC------C-CCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCH
Confidence            0000      0 00111222345677888899999999999999999973

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=348.50  Aligned_cols=267  Identities=27%  Similarity=0.352  Sum_probs=205.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      +.|+..+.||+|+||.||+|.+     .+|+.||||++....          ....+.+.+|++++++++||||++++++
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l~h~~iv~~~~~  110 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST----------EEHLRDFEREIEILKSLQHDNIVKYKGV  110 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC----------SHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC----------HHHHHHHHHHHHHHHhCCCCCeeeEEEE
Confidence            4577889999999999999973     468999999985422          2335678999999999999999999999


Q ss_pred             EecCc--cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          601 FSSLY--CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       601 ~~~~~--~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      +....  ..++||||+++++|.+++......+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+
T Consensus       111 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~  187 (326)
T 2w1i_A          111 CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIG  187 (326)
T ss_dssp             ECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEEC
T ss_pred             EEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEe
Confidence            86644  6799999999999999998876679999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++................++..|+|||.+.+..++.++||||||+++|||++|..|+.....      .+......
T Consensus       188 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~------~~~~~~~~  261 (326)
T 2w1i_A          188 DFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA------EFMRMIGN  261 (326)
T ss_dssp             CCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH------HHHHHHCT
T ss_pred             cCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH------HHHHhhcc
Confidence            999998764322111222344577889999999888899999999999999999999998763210      00000000


Q ss_pred             cc------cchhhhccc-ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          759 TK------EGIMEVLDK-KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       759 ~~------~~~~~~~~~-~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ..      ......+.. ...+........+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~  321 (326)
T 2w1i_A          262 DKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR  321 (326)
T ss_dssp             TCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            00      000011111 111111223456777888999999999999999999998753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.4e-38  Score=351.70  Aligned_cols=351  Identities=22%  Similarity=0.224  Sum_probs=263.2

Q ss_pred             CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCC
Q 003199           12 DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNV   91 (840)
Q Consensus        12 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   91 (840)
                      .++.+++|++|+|++|.|++ +| .+..+++|++|+|++|   .+..++   +..+++|++|++++|.+++. +  ++++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n---~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l  105 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSN---NITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPL  105 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSS---CCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred             ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCC---cCCeEc---cccCCCCCEEECcCCCCcee-e--cCCC
Confidence            46778999999999999995 46 6899999999999999   555554   88899999999999999864 3  8899


Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEE
Q 003199           92 TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ  171 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (840)
                      ++|++|+|++|++++ +|  +..+++|++|++++|+ +.+ ++  ++.+++|++|++++|+..+.+  .+..+++|+.|+
T Consensus       106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~-l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNT-LTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSC-CSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCc-cce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            999999999999995 44  8899999999999998 333 43  788999999999999554444  478899999999


Q ss_pred             eeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccc
Q 003199          172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSG  251 (840)
Q Consensus       172 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~  251 (840)
                      +++|+++++.   +..+++|+.|++++|++++.   .+..+++|+.|+|++|++++ +|  +..+++|++|++++|.+.+
T Consensus       177 ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          177 CSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            9999998753   78889999999999999865   48889999999999999987 44  7788889999999999887


Q ss_pred             cCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccch----
Q 003199          252 VLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPS----  327 (840)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~----  327 (840)
                      ..+.   .+++|+.|++++|+              |+.|++++|.+.+..|  ++.+++|+.|+|++|...+.+|.    
T Consensus       248 ~~~~---~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~  308 (457)
T 3bz5_A          248 LDVS---TLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAG  308 (457)
T ss_dssp             CCCT---TCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred             cCHH---HCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCc
Confidence            6544   44555555554443              2334444444433333  23444555555555543333332    


Q ss_pred             ----hhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhc
Q 003199          328 ----EIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCE  403 (840)
Q Consensus       328 ----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~  403 (840)
                          .+..+++|+.|++++|++++. +  ++.+++|+.|++++|+|++        ++.|..|++++|.++|. + .+  
T Consensus       309 L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-~-~~--  373 (457)
T 3bz5_A          309 ITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-G-QT--  373 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-E-EE--
T ss_pred             ceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-c-ee--
Confidence                123346788888888888874 3  7888888888888888875        24566677888888876 2 11  


Q ss_pred             cCCCeEEccCCCCcCcCCcccc
Q 003199          404 LLPNSINFSNNRLSGPIPLSLI  425 (840)
Q Consensus       404 ~~~~~l~l~~N~l~~~~p~~~~  425 (840)
                      ..+..+++++|+++|.+|..+.
T Consensus       374 ~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          374 ITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             EECCCBCCBTTBEEEECCTTCB
T ss_pred             eecCccccccCcEEEEcChhHh
Confidence            1346678899999999987543

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=1.4e-38  Score=338.83  Aligned_cols=255  Identities=24%  Similarity=0.361  Sum_probs=202.5

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ..+.++|...+.||+|+||.||+|... +|+.||||++.....          ...+.+.+|+.++++++||||++++++
T Consensus         5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~----------~~~~~~~~e~~~l~~l~h~~i~~~~~~   74 (304)
T 2jam_A            5 TNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA----------FRDSSLENEIAVLKKIKHENIVTLEDI   74 (304)
T ss_dssp             -CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC----------------HHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cchhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc----------cchHHHHHHHHHHHhCCCCCeeehhhh
Confidence            345678999999999999999999664 799999999854321          123567899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE---cCCCCCee
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQPKV  677 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl  677 (840)
                      +.+....++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||++   +.++.+||
T Consensus        75 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl  150 (304)
T 2jam_A           75 YESTTHYYLVMQLVSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMI  150 (304)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEB
T ss_pred             cccCCEEEEEEEcCCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEE
Confidence            999999999999999999999987654 68999999999999999999999   999999999999999   77889999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +|||+++....     .......||+.|+|||.+.+..++.++||||||+++|||++|+.||.....  ...  .... .
T Consensus       151 ~Dfg~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~--~~~i-~  220 (304)
T 2jam_A          151 TDFGLSKMEQN-----GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE--SKL--FEKI-K  220 (304)
T ss_dssp             CSCSTTCCCCC-----BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH--HHH--HHHH-H
T ss_pred             ccCCcceecCC-----CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHH--HHHH-H
Confidence            99999865321     223345689999999999998999999999999999999999999975311  100  0000 0


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ....   . ..   ..........+.+++.+|++.||++|||+.|++++-
T Consensus       221 ~~~~---~-~~---~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~  263 (304)
T 2jam_A          221 EGYY---E-FE---SPFWDDISESAKDFICHLLEKDPNERYTCEKALSHP  263 (304)
T ss_dssp             HCCC---C-CC---TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSH
T ss_pred             cCCC---C-CC---ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCc
Confidence            0000   0 00   111122335677788899999999999999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.5e-38  Score=358.51  Aligned_cols=197  Identities=24%  Similarity=0.340  Sum_probs=154.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec-
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS-  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-  603 (840)
                      ++|...+.||+|+||+||+|.. .+|+.||||++....        ......+.+.+|+++++.++||||+++++++.. 
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~--------~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  124 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF--------EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPK  124 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTT--------SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCS
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh--------cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecC
Confidence            5788999999999999999954 479999999984322        123345778999999999999999999999843 


Q ss_pred             ----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          604 ----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       604 ----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                          ....++||||+ +|+|.+++.... .+++..+..++.||+.||+|||+   .+||||||||+|||++.++.+||+|
T Consensus       125 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH~---~~iiHrDlKp~NILl~~~~~~kl~D  199 (458)
T 3rp9_A          125 DVEKFDELYVVLEIA-DSDFKKLFRTPV-YLTELHIKTLLYNLLVGVKYVHS---AGILHRDLKPANCLVNQDCSVKVCD  199 (458)
T ss_dssp             CTTTCCCEEEEECCC-SEEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECC
T ss_pred             CcccCceEEEEEecc-ccchhhhcccCC-CCCHHHHHHHHHHHHHHHHHHHh---CCcCCCCCChhhEEECCCCCEeecc
Confidence                35679999998 579999987754 69999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCC------------------------CcceecccccccccCcccc-ccCCCCccccchhHHHHHHHHHh
Q 003199          680 FGIAKVLQARGGK------------------------DSTTTVIAGTYGYLAPEYA-YSSKATTKCDVYSFGVVLMELIT  734 (840)
Q Consensus       680 fg~a~~~~~~~~~------------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~t  734 (840)
                      ||+|+........                        ........||+.|+|||++ .+..++.++|||||||++|||++
T Consensus       200 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          200 FGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             CTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             cccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            9999876432111                        0123456789999999976 55679999999999999999999


Q ss_pred             C
Q 003199          735 G  735 (840)
Q Consensus       735 g  735 (840)
                      |
T Consensus       280 g  280 (458)
T 3rp9_A          280 M  280 (458)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=7.2e-39  Score=336.28  Aligned_cols=250  Identities=26%  Similarity=0.348  Sum_probs=194.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC-
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-  604 (840)
                      ++|+..+.||+|+||.||+|... |+.||||++....            ..+.+.+|++++++++||||+++++++.+. 
T Consensus        21 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~------------~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   87 (278)
T 1byg_A           21 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA------------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK   87 (278)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC--------------HHHHHTHHHHTTCCCTTBCCEEEEECCC-
T ss_pred             hhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh------------HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence            57888899999999999999876 8999999984322            235688999999999999999999987554 


Q ss_pred             ccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+   ++++||||||+||+++.++.+||+|||++
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~  164 (278)
T 1byg_A           88 GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLT  164 (278)
T ss_dssp             -CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-
T ss_pred             CceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCcceEEEeCCCcEEEeecccc
Confidence            57899999999999999997653 237899999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +....      ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||.....  ......    .     
T Consensus       165 ~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~--~~~~~~----~-----  227 (278)
T 1byg_A          165 KEASS------TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVVPR----V-----  227 (278)
T ss_dssp             -----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG--GGHHHH----H-----
T ss_pred             ccccc------cccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHH----H-----
Confidence            76532      1223457889999999998899999999999999999998 9999975311  111100    0     


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                       ..........   .....+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       228 -~~~~~~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~  273 (278)
T 1byg_A          228 -EKGYKMDAPD---GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  273 (278)
T ss_dssp             -TTTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -hcCCCCCCcc---cCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence             0000111112   223456778889999999999999999999987643

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=1.6e-38  Score=334.93  Aligned_cols=253  Identities=25%  Similarity=0.387  Sum_probs=204.1

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      .....+|+..+.||+|+||.||+|... +|+.||||++....              +.+.+|++++++++||||++++++
T Consensus         7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------------~~~~~e~~~l~~l~h~~i~~~~~~   72 (284)
T 2a19_B            7 KRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN--------------EKAEREVKALAKLDHVNIVHYNGC   72 (284)
T ss_dssp             HHHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS--------------GGGHHHHHHHHHCCCTTBCCEEEE
T ss_pred             chhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc--------------HHHHHHHHHHHhCCCCCEEEEeee
Confidence            345678999999999999999999765 79999999985432              235679999999999999999998


Q ss_pred             Eec----------------CccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCC
Q 003199          601 FSS----------------LYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIK  663 (840)
Q Consensus       601 ~~~----------------~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk  663 (840)
                      +..                ....++||||+++|+|.+++... ...+++..+..++.|++.||+|||+   .+|+|||||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlk  149 (284)
T 2a19_B           73 WDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS---KKLINRDLK  149 (284)
T ss_dssp             EEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCS
T ss_pred             EeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCC
Confidence            854                44578999999999999999754 2468999999999999999999999   999999999


Q ss_pred             CCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCC
Q 003199          664 STNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF  743 (840)
Q Consensus       664 ~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~  743 (840)
                      |+||+++.++.+||+|||+++.....    .......||+.|+|||.+.+..++.++||||||+++|||++|..|+... 
T Consensus       150 p~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-  224 (284)
T 2a19_B          150 PSNIFLVDTKQVKIGDFGLVTSLKND----GKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET-  224 (284)
T ss_dssp             GGGEEEEETTEEEECCCTTCEESSCC----SCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-
T ss_pred             HHHEEEcCCCCEEECcchhheecccc----ccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-
Confidence            99999999999999999999776431    2233456899999999999989999999999999999999999886421 


Q ss_pred             CCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                            ..+.          .......+...+.   ..+.+++.+|++.||++|||+.|++++|+.+.....
T Consensus       225 ------~~~~----------~~~~~~~~~~~~~---~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~  277 (284)
T 2a19_B          225 ------SKFF----------TDLRDGIISDIFD---KKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE  277 (284)
T ss_dssp             ------HHHH----------HHHHTTCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred             ------HHHH----------HHhhcccccccCC---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence                  0000          1111111222222   345678889999999999999999999998765443

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=6.3e-39  Score=345.10  Aligned_cols=267  Identities=19%  Similarity=0.266  Sum_probs=193.2

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ...++|+..+.||+|+||+||+|.. .+|+.||||++......        ....+.+.+|++++++++||||+++++++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~~iv~~~~~~  102 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEE--------EGVPGTAIREVSLLKELQHRNIIELKSVI  102 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC----------------CHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccc--------cccchhHHHHHHHHHHcCCCCcceEEEEE
Confidence            3456899999999999999999954 57999999998543211        22345677899999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc-----CCCCCe
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD-----VNYQPK  676 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-----~~~~~k  676 (840)
                      .+....++||||++ |+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++     .++.+|
T Consensus       103 ~~~~~~~lv~e~~~-~~L~~~~~~~~-~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~k  177 (329)
T 3gbz_A          103 HHNHRLHLIFEYAE-NDLKKYMDKNP-DVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASETPVLK  177 (329)
T ss_dssp             EETTEEEEEEECCS-EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----CCEEE
T ss_pred             ecCCEEEEEEecCC-CCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCccceEE
Confidence            99999999999997 59999998765 68999999999999999999999   9999999999999994     445599


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      |+|||+++....   .........||+.|+|||++.+. .++.++|||||||++|||++|+.||...... .........
T Consensus       178 l~Dfg~a~~~~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~~~~~  253 (329)
T 3gbz_A          178 IGDFGLARAFGI---PIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEI-DQLFKIFEV  253 (329)
T ss_dssp             ECCTTHHHHHC--------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHH
T ss_pred             ECcCCCccccCC---cccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHH-HHHHHHHHH
Confidence            999999987643   12233455789999999998774 4899999999999999999999999753211 000000000


Q ss_pred             h-hccccch---------hhhcccccCCCcHH-----HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          756 K-VDTKEGI---------MEVLDKKLSGSFRD-----EMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       756 ~-~~~~~~~---------~~~~~~~~~~~~~~-----~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      . .......         ..............     ....+.+++.+|++.||++|||+.|++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  319 (329)
T 3gbz_A          254 LGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH  319 (329)
T ss_dssp             HCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             hCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence            0 0000000         00000000011111     23567788999999999999999999975

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=9.6e-39  Score=345.30  Aligned_cols=270  Identities=24%  Similarity=0.322  Sum_probs=194.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHH--HHHHHHhccCCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK--TEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~--~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ++|...+.||+|+||.||+|.. +++.||||++....             ...+.  .|+..+..++||||+++++++..
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~-------------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~   78 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN-------------RQNFINEKNIYRVPLMEHDNIARFIVGDER   78 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG-------------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEE
T ss_pred             HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc-------------hhhHHHHHHHHHHHhccCcchhhheecccc
Confidence            4678889999999999999976 58999999984321             12233  34444556899999999985532


Q ss_pred             -----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCC---------CeEecCCCCCCEEE
Q 003199          604 -----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLS---------PIIHRDIKSTNILL  669 (840)
Q Consensus       604 -----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~---------~ivH~Dlk~~Nill  669 (840)
                           ....++||||+++|+|.+++...  ..++..+..++.|++.||+|||+   .         +|+||||||+|||+
T Consensus        79 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~~L~~LH~---~~~~~~~~~~~ivH~Dikp~Nill  153 (336)
T 3g2f_A           79 VTADGRMEYLLVMEYYPNGSLXKYLSLH--TSDWVSSCRLAHSVTRGLAYLHT---ELPRGDHYKPAISHRDLNSRNVLV  153 (336)
T ss_dssp             ECTTSCEEEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHC---CBCCGGGCBCCEECSSCSGGGEEE
T ss_pred             cccCCCceEEEEEecCCCCcHHHHHhhc--ccchhHHHHHHHHHHHHHHHHHh---hhccccccccceeecccccceEEE
Confidence                 33568999999999999999876  45899999999999999999999   7         99999999999999


Q ss_pred             cCCCCCeeecccchhhhhccCC-----CCcceecccccccccCcccccc-------CCCCccccchhHHHHHHHHHhCCC
Q 003199          670 DVNYQPKVADFGIAKVLQARGG-----KDSTTTVIAGTYGYLAPEYAYS-------SKATTKCDVYSFGVVLMELITGRK  737 (840)
Q Consensus       670 ~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slG~il~el~tg~~  737 (840)
                      +.++.+||+|||+++.+.....     .........||+.|+|||++.+       ..++.++|||||||++|||++|..
T Consensus       154 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~  233 (336)
T 3g2f_A          154 KNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCT  233 (336)
T ss_dssp             CTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBG
T ss_pred             cCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCC
Confidence            9999999999999987643211     1122334579999999999876       456779999999999999999977


Q ss_pred             CCCCCCCCCcchhhhhhhhhc--cccchh-----hhcccccCCC---cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          738 PVEDDFGDNKNIIYWVSIKVD--TKEGIM-----EVLDKKLSGS---FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       738 p~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~---~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ||............+......  ......     ......++..   .......+.+++.+||+.||++|||++|+++.|
T Consensus       234 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L  313 (336)
T 3g2f_A          234 DLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERM  313 (336)
T ss_dssp             GGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             cCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHH
Confidence            764322211111111000000  000000     0001111111   123566788999999999999999999999999


Q ss_pred             hhcCCCC
Q 003199          808 AEADPCR  814 (840)
Q Consensus       808 ~~~~~~~  814 (840)
                      +++-...
T Consensus       314 ~~ll~~~  320 (336)
T 3g2f_A          314 AELMMIW  320 (336)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHH
Confidence            8755433

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=3.8e-38  Score=333.00  Aligned_cols=248  Identities=25%  Similarity=0.353  Sum_probs=194.8

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec---
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS---  603 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~---  603 (840)
                      |...+.||+|+||.||+|.. .++..||+|++......        ....+.+.+|+.++++++||||+++++++..   
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   99 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT--------KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVK   99 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--------HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESS
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhC--------HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccC
Confidence            56677899999999999965 47889999998543211        2335778999999999999999999998865   


Q ss_pred             -CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCCEEEc-CCCCCeeec
Q 003199          604 -LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSP--IIHRDIKSTNILLD-VNYQPKVAD  679 (840)
Q Consensus       604 -~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~-~~~~~kl~D  679 (840)
                       ....++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+  |+||||||+||+++ .++.+||+|
T Consensus       100 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~kl~D  175 (290)
T 1t4h_A          100 GKKCIVLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGD  175 (290)
T ss_dssp             SCEEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECC
T ss_pred             CCceEEEEEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHc---CCCCEEECCCCHHHEEEECCCCCEEEee
Confidence             456799999999999999998754 68999999999999999999999   77  99999999999998 789999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ||++.....     .......||+.|+|||.+. +.++.++||||+|+++|||++|+.||.....    ...........
T Consensus       176 fg~~~~~~~-----~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~----~~~~~~~~~~~  245 (290)
T 1t4h_A          176 LGLATLKRA-----SFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRVTSG  245 (290)
T ss_dssp             TTGGGGCCT-----TSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHHTTT
T ss_pred             CCCcccccc-----cccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCc----HHHHHHHHhcc
Confidence            999975422     2334557999999999876 4689999999999999999999999975311    11111100000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .      ........   ....+.+++.+||+.||++|||+.|++++
T Consensus       246 ~------~~~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~ell~h  283 (290)
T 1t4h_A          246 V------KPASFDKV---AIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             C------CCGGGGGC---CCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             C------CccccCCC---CCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence            0      00011111   12457788889999999999999999976

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=3.6e-39  Score=341.07  Aligned_cols=265  Identities=26%  Similarity=0.382  Sum_probs=196.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC--CCc--EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN--SGE--VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~--~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||.||+|.+.  +++  .||||++.....       ......+.+.+|++++++++||||+++++++
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   90 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVL-------SQPEAMDDFIREVNAMHSLDHRNLIRLYGVV   90 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---------------CHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCcc-------CCHHHHHHHHHHHHHHHhCCCCCcccEEEEE
Confidence            46888899999999999999653  333  689998853321       1123457789999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .... .++||||+++++|.+++......+++..+..++.|++.||+|||+   ++++||||||+||+++.++.+||+|||
T Consensus        91 ~~~~-~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg  166 (291)
T 1u46_A           91 LTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFG  166 (291)
T ss_dssp             CSSS-CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCT
T ss_pred             ccCC-ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEEcccc
Confidence            8765 789999999999999998765568999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++................+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.....  ..   .........
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~---~~~~~~~~~  241 (291)
T 1u46_A          167 LMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG--SQ---ILHKIDKEG  241 (291)
T ss_dssp             TCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HH---HHHHHHTSC
T ss_pred             ccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH--HH---HHHHHHccC
Confidence            99876443222223344567889999999988889999999999999999999 9999975311  11   110000000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                               ............+.+++.+|++.||++|||+.+++++|+++.+...
T Consensus       242 ---------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~  287 (291)
T 1u46_A          242 ---------ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDM  287 (291)
T ss_dssp             ---------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC----
T ss_pred             ---------CCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCccch
Confidence                     0001111233567788889999999999999999999998876554

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.7e-38  Score=359.25  Aligned_cols=256  Identities=24%  Similarity=0.315  Sum_probs=202.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|+||+||+|..+ +|+.||||++......       .......+.+|++++++++||||+++++++.+.
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~-------~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~  257 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLK-------KRKGYQGAMVEKKILAKVHSRFIVSLAYAFETK  257 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHH-------HTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhh-------hhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeC
Confidence            45777889999999999999765 7999999998543211       122346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ...++||||+++|+|.+++...   ...+++..+..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||
T Consensus       258 ~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~---~gIvHrDLKP~NILl~~~g~vkL~DFG  334 (543)
T 3c4z_A          258 TDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLG  334 (543)
T ss_dssp             SEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             CEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH---cCCcccCCChHHEEEeCCCCEEEeecc
Confidence            9999999999999999998764   2368999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +++.....   ........||+.|+|||++.+..++.++|||||||++|||++|+.||........ ...........  
T Consensus       335 la~~~~~~---~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~-~~~~~~~i~~~--  408 (543)
T 3c4z_A          335 LAVELKAG---QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE-NKELKQRVLEQ--  408 (543)
T ss_dssp             TCEECCTT---CCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCC-HHHHHHHHHHC--
T ss_pred             eeeeccCC---CcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchh-HHHHHHHHhhc--
Confidence            99875431   1223345899999999999999999999999999999999999999976422111 11111111100  


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM-----NEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~-----~evl~~  806 (840)
                            ....+..+   ...+.+++.+|++.||++||++     .+++++
T Consensus       409 ------~~~~p~~~---s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~H  449 (543)
T 3c4z_A          409 ------AVTYPDKF---SPASKDFCEALLQKDPEKRLGFRDGSCDGLRTH  449 (543)
T ss_dssp             ------CCCCCTTS---CHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTS
T ss_pred             ------ccCCCccc---CHHHHHHHHHhccCCHhHCCCCcccCHHHHHcC
Confidence                  01112222   3456677889999999999964     777765

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.9e-38  Score=344.90  Aligned_cols=197  Identities=27%  Similarity=0.339  Sum_probs=172.5

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-----CCCcceee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-----HKNIVKLY  598 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~  598 (840)
                      .++|...+.||+|+||+||+|.. .+++.||||++...           ......+..|+++++.+.     ||||++++
T Consensus        34 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----------~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~  102 (360)
T 3llt_A           34 NNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-----------KKYTRSAKIEADILKKIQNDDINNNNIVKYH  102 (360)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-----------HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred             cCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-----------hhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence            46788999999999999999966 57899999998421           233456778999999886     99999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC------
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV------  671 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~------  671 (840)
                      +++...+..++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+   ++||||||||+|||++.      
T Consensus       103 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~~~  178 (360)
T 3llt_A          103 GKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLKPENILLDDPYFEKS  178 (360)
T ss_dssp             EEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCTTCCEE
T ss_pred             ceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCcccEEEcccccccc
Confidence            9999999999999999 999999998753 358999999999999999999999   99999999999999975      


Q ss_pred             -------------------CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHH
Q 003199          672 -------------------NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMEL  732 (840)
Q Consensus       672 -------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el  732 (840)
                                         ++.+||+|||+|+....      ......||+.|+|||++.+..++.++|||||||++|||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  252 (360)
T 3llt_A          179 LITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD------YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAEL  252 (360)
T ss_dssp             EEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS------CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred             ccchhcccccccccccccCCCCEEEEeccCceecCC------CCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHH
Confidence                               78899999999976432      22345789999999999999999999999999999999


Q ss_pred             HhCCCCCCCC
Q 003199          733 ITGRKPVEDD  742 (840)
Q Consensus       733 ~tg~~p~~~~  742 (840)
                      ++|+.||...
T Consensus       253 l~g~~pf~~~  262 (360)
T 3llt_A          253 YTGSLLFRTH  262 (360)
T ss_dssp             HHSSCSCCCS
T ss_pred             HHCCCCCCCC
Confidence            9999999753

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.6e-38  Score=334.85  Aligned_cols=250  Identities=25%  Similarity=0.391  Sum_probs=202.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|... +++.||||++.....       ......+.+.+|++++++++||||+++++++.+.
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   86 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQL-------EKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDR   86 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEccccc-------chHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcC
Confidence            56888899999999999999665 688999999843221       1122346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++.
T Consensus        87 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~  162 (284)
T 2vgo_A           87 KRIYLMLEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCHE---RKVIHRDIKPENLLMGYKGELKIADFGWSV  162 (284)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEEcCCCCEEEecccccc
Confidence            99999999999999999998764 68999999999999999999999   999999999999999999999999999986


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....     .......|++.|+|||.+.+..++.++||||||+++|||++|+.||.....    . ........      
T Consensus       163 ~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~-~~~~~~~~------  226 (284)
T 2vgo_A          163 HAPS-----LRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH----T-ETHRRIVN------  226 (284)
T ss_dssp             ECSS-----SCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH----H-HHHHHHHT------
T ss_pred             cCcc-----cccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCH----h-HHHHHHhc------
Confidence            5422     223345789999999999998999999999999999999999999975311    0 00000000      


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                        .+...+..+   ...+.+++.+|++.||.+||++.+++++-
T Consensus       227 --~~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~~ll~h~  264 (284)
T 2vgo_A          227 --VDLKFPPFL---SDGSKDLISKLLRYHPPQRLPLKGVMEHP  264 (284)
T ss_dssp             --TCCCCCTTS---CHHHHHHHHHHSCSSGGGSCCHHHHHTCH
T ss_pred             --cccCCCCcC---CHHHHHHHHHHhhcCHhhCCCHHHHhhCH
Confidence              011122222   24566788899999999999999999863

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.7e-38  Score=360.97  Aligned_cols=255  Identities=26%  Similarity=0.367  Sum_probs=198.7

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .+.+.|...+.||+|+||+||+|... ++..||||++......        ......+.+|+.+++.++||||+++++++
T Consensus        34 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~--------~~~~~~~~~E~~~l~~l~hpniv~~~~~~  105 (494)
T 3lij_A           34 HLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVS--------TSSNSKLLEEVAVLKLLDHPNIMKLYDFF  105 (494)
T ss_dssp             CHHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-------------CTTHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             chhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccC--------chHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            46678999999999999999999664 7899999998644321        11235688999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---CCCCeee
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---NYQPKVA  678 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~  678 (840)
                      .+....++||||+++|+|.+.+.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.   ++.+||+
T Consensus       106 ~~~~~~~lv~e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~  181 (494)
T 3lij_A          106 EDKRNYYLVMECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIV  181 (494)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred             EeCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChhhEEEeCCCCCCcEEEE
Confidence            99999999999999999999887654 68999999999999999999999   99999999999999976   4459999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++....    ........||+.|+|||++. ..++.++||||+||++|+|++|+.||.+...  ...   ......
T Consensus       182 DfG~a~~~~~----~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~---~~~i~~  251 (494)
T 3lij_A          182 DFGLSAVFEN----QKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTD--QEI---LRKVEK  251 (494)
T ss_dssp             CCTTCEECBT----TBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHH---HHHHHH
T ss_pred             ECCCCeECCC----CccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCH--HHH---HHHHHh
Confidence            9999977632    22334567999999999876 5699999999999999999999999975311  111   100000


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...       ....+.+......+.+++.+|++.||.+|||+.|++++
T Consensus       252 ~~~-------~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          252 GKY-------TFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             TCC-------CCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             CCC-------CCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence            000       00011112234557778889999999999999999976

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.7e-38  Score=333.06  Aligned_cols=250  Identities=25%  Similarity=0.377  Sum_probs=193.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|... +|+.||||++.....       ......+.+.+|+.+++.++||||+++++++...
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   83 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKI-------RSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTP   83 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccc-------cchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecC
Confidence            46788899999999999999765 799999999843221       1123356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||++.
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~  159 (276)
T 2h6d_A           84 TDFFMVMEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSN  159 (276)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCCCGGG
T ss_pred             CeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeeccccc
Confidence            99999999999999999997764 68999999999999999999999   899999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ....    ........||+.|+|||.+.+..+ +.++||||||+++|||++|+.||....     ............   
T Consensus       160 ~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~~~~~~~~~~---  227 (276)
T 2h6d_A          160 MMSD----GEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH-----VPTLFKKIRGGV---  227 (276)
T ss_dssp             CCCC-----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHCC---
T ss_pred             ccCC----CcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc-----HHHHHHHhhcCc---
Confidence            6532    122334578999999999987765 689999999999999999999997531     111110000000   


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           ...+..   ....+.+++.+|++.||++|||+.|++++
T Consensus       228 -----~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          228 -----FYIPEY---LNRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             -----CCCCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             -----ccCchh---cCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence                 011112   22456678889999999999999999986

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=2e-38  Score=360.16  Aligned_cols=257  Identities=25%  Similarity=0.357  Sum_probs=205.5

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +.++|...+.||+|+||.||+|... +|+.||||++.......       ....+.+.+|+.++++++||||+++++++.
T Consensus        24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-------~~~~~~~~~E~~~l~~l~hpniv~~~~~~~   96 (484)
T 3nyv_A           24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ-------KTDKESLLREVQLLKQLDHPNIMKLYEFFE   96 (484)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCB-------SSCHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhccc-------chHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            4578999999999999999999665 79999999985443211       122467889999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE---cCCCCCeeec
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQPKVAD  679 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~D  679 (840)
                      +....++||||+.+|+|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||++   +.++.+||+|
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  172 (484)
T 3nyv_A           97 DKGYFYLVGEVYTGGELFDEIISRK-RFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIID  172 (484)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECC
T ss_pred             eCCEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEEe
Confidence            9999999999999999999997764 68999999999999999999999   999999999999999   4678999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ||+++.+..    ........||+.|+|||++.+ .++.++||||+||++|||++|+.||.+..  .......+   ...
T Consensus       173 fg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~--~~~~~~~i---~~~  242 (484)
T 3nyv_A          173 FGLSTHFEA----SKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGAN--EYDILKKV---EKG  242 (484)
T ss_dssp             TTHHHHBCC----CCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHH---HHC
T ss_pred             eeeeEEccc----ccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCC--HHHHHHHH---HcC
Confidence            999987643    223345679999999998866 68999999999999999999999997531  11111100   000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ..      . ...+.+......+.+++.+|++.||.+|||+.|++++-.
T Consensus       243 ~~------~-~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~  284 (484)
T 3nyv_A          243 KY------T-FELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEW  284 (484)
T ss_dssp             CC------C-CCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHH
T ss_pred             CC------C-CCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChh
Confidence            00      0 001112233456778888999999999999999998743

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.6e-38  Score=338.07  Aligned_cols=251  Identities=27%  Similarity=0.402  Sum_probs=203.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|...+.||+|+||.||+|.. .+++.||||++......         ...+.+.+|+.+++.++||||+++++++.+.
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   92 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE---------DEIEDIQQEITVLSQCDSPYVTKYYGSYLKD   92 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS---------TTHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH---------HHHHHHHHHHHHHHhCCCCCEeEEEEEEecC
Confidence            4588889999999999999965 57899999998543311         2246788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|.+++...  .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++.
T Consensus        93 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~  167 (303)
T 3a7i_A           93 TKLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAG  167 (303)
T ss_dssp             TEEEEEEECCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CeEEEEEEeCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCCCEEEeecccce
Confidence            9999999999999999999764  68999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........||+.|+|||.+.+..++.++||||||+++|||++|+.||.....  ...   ....       .
T Consensus       168 ~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~---~~~~-------~  232 (303)
T 3a7i_A          168 QLTDT---QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHP--MKV---LFLI-------P  232 (303)
T ss_dssp             ECBTT---BCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHH---HHHH-------H
T ss_pred             ecCcc---ccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCH--HHH---HHHh-------h
Confidence            65431   2223456789999999999999999999999999999999999999975311  000   0000       0


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      ..........+   ...+.+++.+||+.||++|||+.|++++..
T Consensus       233 ~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~~~  273 (303)
T 3a7i_A          233 KNNPPTLEGNY---SKPLKEFVEACLNKEPSFRPTAKELLKHKF  273 (303)
T ss_dssp             HSCCCCCCSSC---CHHHHHHHHHHCCSSGGGSCCHHHHTTCHH
T ss_pred             cCCCCCCcccc---CHHHHHHHHHHcCCChhhCcCHHHHhhChh
Confidence            00111122222   245667888999999999999999998754

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=2.3e-38  Score=334.51  Aligned_cols=249  Identities=19%  Similarity=0.299  Sum_probs=197.9

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCY  600 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~  600 (840)
                      ...++|+..+.||+|+||.||+|... +++.||||++......        ......+.+|+..+..+ +||||++++++
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~e~~~~~~l~~h~~iv~~~~~   79 (289)
T 1x8b_A            8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAG--------SVDEQNALREVYAHAVLGQHSHVVRYFSA   79 (289)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTT--------SHHHHHHHHHHHHHHHSCSCTTBCCEEEE
T ss_pred             cccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccc--------cHHHHHHHHHHHHHHHhCCCCCeeeeeee
Confidence            34578999999999999999999665 7999999998543211        12346678899999999 89999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCC---CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC-----
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-----  672 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-----  672 (840)
                      +.+.+..++||||+++|+|.+++....   ..+++..+..++.|++.||+|||+   ++|+||||||+||+++.+     
T Consensus        80 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~  156 (289)
T 1x8b_A           80 WAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNA  156 (289)
T ss_dssp             EEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC-------
T ss_pred             eecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCcc
Confidence            999999999999999999999997641   468999999999999999999999   999999999999999844     


Q ss_pred             --------------CCCeeecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCC
Q 003199          673 --------------YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRK  737 (840)
Q Consensus       673 --------------~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~  737 (840)
                                    ..+||+|||.+......       ....||+.|+|||.+.+. .++.++||||||+++|||++|.+
T Consensus       157 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~  229 (289)
T 1x8b_A          157 ASEEGDEDDWASNKVMFKIGDLGHVTRISSP-------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEP  229 (289)
T ss_dssp             -------------CCCEEECCCTTCEETTCS-------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cccccccccccCCceEEEEcccccccccCCc-------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCC
Confidence                          47899999999765431       223589999999998766 56789999999999999999988


Q ss_pred             CCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       738 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      |+...    .   .+.....        ...+.++..+   ...+.+++.+|++.||++|||+.|++++-
T Consensus       230 ~~~~~----~---~~~~~~~--------~~~~~~~~~~---~~~~~~li~~~l~~dp~~Rps~~~ll~h~  281 (289)
T 1x8b_A          230 LPRNG----D---QWHEIRQ--------GRLPRIPQVL---SQEFTELLKVMIHPDPERRPSAMALVKHS  281 (289)
T ss_dssp             CCSSS----H---HHHHHHT--------TCCCCCSSCC---CHHHHHHHHHHTCSSGGGSCCHHHHHTCT
T ss_pred             CCcch----h---HHHHHHc--------CCCCCCCccc---CHHHHHHHHHHhCCCcccCCCHHHHhhCh
Confidence            76432    1   1111100        0011122222   34566788899999999999999999764

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-38  Score=345.70  Aligned_cols=261  Identities=22%  Similarity=0.311  Sum_probs=194.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .+.|...+.||+|+||.||+|.. .+|+.||||++.....        .....+.+.+|+++++.++||||+++++++..
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~   95 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ--------SELFAKRAYRELRLLKHMRHENVIGLLDVFTP   95 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS--------SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECS
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCcccc--------CHHHHHHHHHHHHHHHhCCCcCCCCceeeEec
Confidence            35688889999999999999965 5799999999844321        13345678899999999999999999999976


Q ss_pred             Cc------cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 LY------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 ~~------~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      ..      ..++||||+ +++|.+++...  .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||
T Consensus        96 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl  169 (367)
T 1cm8_A           96 DETLDDFTDFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKI  169 (367)
T ss_dssp             CSSTTTCCCCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEE
T ss_pred             CCccccCceEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCHHHEEEcCCCCEEE
Confidence            53      459999999 88999999874  68999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      +|||+++....      ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ..+.......
T Consensus       170 ~Dfg~a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~  242 (367)
T 1cm8_A          170 LDFGLARQADS------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL-DQLKEIMKVT  242 (367)
T ss_dssp             CCCTTCEECCS------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHH
T ss_pred             Eeeeccccccc------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhc
Confidence            99999976432      2334578999999999877 67999999999999999999999999753210 0000000000


Q ss_pred             hccccch---------h---h----hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          757 VDTKEGI---------M---E----VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       757 ~~~~~~~---------~---~----~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .......         .   .    .....+...+......+.+++.+|++.||++|||+.|++++
T Consensus       243 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          243 GTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             CCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence            0000000         0   0    00001111112234567788889999999999999999997

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2.3e-38  Score=335.41  Aligned_cols=252  Identities=22%  Similarity=0.357  Sum_probs=204.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|...+.||+|+||.||+|... +++.||+|++......       .....+.+.+|+.+++.++||||+++++++.+.
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~-------~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   87 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLL-------KPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN   87 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC-------SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhcc-------CHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccC
Confidence            56788899999999999999665 6889999998543211       123456788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++++|.+++.... .+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus        88 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  163 (294)
T 2rku_A           88 DFVFVVLELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLAT  163 (294)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCCCEEEEeccCce
Confidence            99999999999999999887654 68999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........||+.|+|||.+.+..++.++||||||+++|||++|+.||.....    ...+.... ..     
T Consensus       164 ~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~~~~-~~-----  230 (294)
T 2rku_A          164 KVEYD---GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL----KETYLRIK-KN-----  230 (294)
T ss_dssp             ECCST---TCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHHHH-TT-----
T ss_pred             ecccC---ccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHh-hc-----
Confidence            65321   2223446789999999999988899999999999999999999999975311    00111100 00     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                         ....+...   ...+.+++.+|++.||++|||+.|++++-
T Consensus       231 ---~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~~ll~~~  267 (294)
T 2rku_A          231 ---EYSIPKHI---NPVAASLIQKMLQTDPTARPTINELLNDE  267 (294)
T ss_dssp             ---CCCCCTTS---CHHHHHHHHHHTCSSGGGSCCGGGGGGSH
T ss_pred             ---cCCCcccc---CHHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence               00111222   24566788899999999999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=7.2e-39  Score=345.21  Aligned_cols=266  Identities=26%  Similarity=0.341  Sum_probs=198.9

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|... +|+.||||++.....        .....+.+.+|+.++++++||||+++++++.+
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   95 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD--------DKMVKKIAMREIKLLKQLRHENLVNLLEVCKK   95 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS--------CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC--------chHHHHHHHHHHHHHhhCCCCCEeeEEEEeec
Confidence            357888999999999999999665 689999999854321        13345668899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++++|.++..... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus        96 ~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  171 (331)
T 4aaa_A           96 KKRWYLVFEFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFA  171 (331)
T ss_dssp             TTEEEEEEECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             CCEEEEEEecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHH---CCEEccCcChheEEEcCCCcEEEEeCCCc
Confidence            999999999999999888766543 68999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc----
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD----  758 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~----  758 (840)
                      +.....   ........||+.|+|||++.+. .++.++|||||||++|||++|+.||....... ...........    
T Consensus       172 ~~~~~~---~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~  247 (331)
T 4aaa_A          172 RTLAAP---GEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIMMCLGNLIPR  247 (331)
T ss_dssp             ---------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHH
T ss_pred             eeecCC---ccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChh
Confidence            776432   2223445789999999998775 68999999999999999999999997532110 00000000000    


Q ss_pred             ------cccchhhhcccccC-CC-----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 ------TKEGIMEVLDKKLS-GS-----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ------~~~~~~~~~~~~~~-~~-----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            ..........+... ..     +......+.+++.+|++.||++|||+.|++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          248 HQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             HHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             hhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence                  00000000000000 00     11234567889999999999999999999876

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.8e-38  Score=335.60  Aligned_cols=252  Identities=23%  Similarity=0.307  Sum_probs=185.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++.....        .....+.+.++...++.++||||+++++++.+.
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~   78 (290)
T 3fme_A            7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN--------SQEQKRLLMDLDISMRTVDCPFTVTFYGALFRE   78 (290)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C--------HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC--------cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeecc
Confidence            5688899999999999999965 5799999999854321        122334455666668888999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCCEEEcCCCCCeeecc
Q 003199          605 YCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLS-PIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      ...++||||++ |+|.+++..   ....+++..+..++.|++.||+|||+   + +|+||||||+||+++.++.+||+||
T Consensus        79 ~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~Df  154 (290)
T 3fme_A           79 GDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDVKPSNVLINALGQVKMCDF  154 (290)
T ss_dssp             SSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HSCCCCCCCSGGGCEECTTCCEEBCCC
T ss_pred             CCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEeec
Confidence            99999999997 588777654   34579999999999999999999999   7 9999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCcccc----ccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYA----YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |+++....    ........||+.|+|||.+    .+..++.++||||+|+++|||++|+.||.....   .........
T Consensus       155 g~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~  227 (290)
T 3fme_A          155 GISGYLVD----DVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGT---PFQQLKQVV  227 (290)
T ss_dssp             -------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSC---HHHHHHHHH
T ss_pred             CCcccccc----cccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCc---hHHHHHHHh
Confidence            99987643    2223345799999999996    556789999999999999999999999974211   111111100


Q ss_pred             hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...        .....  .......+.+++.+|++.||++|||+.|++++
T Consensus       228 ~~~--------~~~~~--~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~h  267 (290)
T 3fme_A          228 EEP--------SPQLP--ADKFSAEFVDFTSQCLKKNSKERPTYPELMQH  267 (290)
T ss_dssp             HSC--------CCCCC--TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             ccC--------CCCcc--cccCCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence            000        00000  11223456778889999999999999999885

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.4e-39  Score=349.03  Aligned_cols=260  Identities=25%  Similarity=0.298  Sum_probs=201.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEe----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~  600 (840)
                      ++|...+.||+|+||.||+|..    .+|+.||||++........      ....+.+.+|+++++.+ .||||++++++
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~------~~~~~~~~~E~~~l~~l~~h~~iv~~~~~  127 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQK------AKTTEHTRTERQVLEHIRQSPFLVTLHYA  127 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEE------ESSGGGCCCHHHHHHHHHTCTTBCCEEEE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhh------hhHHHHHHHHHHHHHHccCCCceeEEEEE
Confidence            5788899999999999999976    4789999999864331110      01123456789999999 69999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +......++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus       128 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Df  203 (355)
T 1vzo_A          128 FQTETKLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDF  203 (355)
T ss_dssp             EEETTEEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEESCS
T ss_pred             EeeCceEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCcEEEeeC
Confidence            999999999999999999999998754 68999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |+++.+...  .........||+.|+|||++.+  ..++.++|||||||++|||++|+.||........ ..........
T Consensus       204 G~a~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~  280 (355)
T 1vzo_A          204 GLSKEFVAD--ETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS-QAEISRRILK  280 (355)
T ss_dssp             SEEEECCGG--GGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC-HHHHHHHHHH
T ss_pred             CCCeecccC--CCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccch-HHHHHHHHhc
Confidence            999765321  1222345679999999999875  3478999999999999999999999975322211 1111111000


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHhhh
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQLLAE  809 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~L~~  809 (840)
                              ........   ....+.+++.+||+.||++||     ++.|++++..-
T Consensus       281 --------~~~~~~~~---~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f  325 (355)
T 1vzo_A          281 --------SEPPYPQE---MSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFF  325 (355)
T ss_dssp             --------CCCCCCTT---SCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGG
T ss_pred             --------cCCCCCcc---cCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcch
Confidence                    01111222   234566788899999999999     99999988653

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=4.3e-38  Score=358.67  Aligned_cols=261  Identities=25%  Similarity=0.355  Sum_probs=201.4

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccc---cCchhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVS---ASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~---~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      .+.+.|...+.||+|+||+||+|... +++.||||++........   ..........+.+.+|+.++++++||||++++
T Consensus        33 ~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~  112 (504)
T 3q5i_A           33 KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF  112 (504)
T ss_dssp             CGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             CcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            35578999999999999999999654 689999999865432110   00011123457789999999999999999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC---CC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY---QP  675 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~  675 (840)
                      +++.+....++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++   .+
T Consensus       113 ~~~~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~  188 (504)
T 3q5i_A          113 DVFEDKKYFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILSGICYLHK---HNIVHRDIKPENILLENKNSLLNI  188 (504)
T ss_dssp             EEEECSSEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESSTTCCSSE
T ss_pred             EEEEcCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCcHHHEEEecCCCCccE
Confidence            99999999999999999999999987654 69999999999999999999999   9999999999999998776   68


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|||+++....    ........||+.|+|||++. +.++.++||||+||++|+|++|+.||.+...  ..   ... 
T Consensus       189 kl~Dfg~a~~~~~----~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~---~~~-  257 (504)
T 3q5i_A          189 KIVDFGLSSFFSK----DYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQND--QD---IIK-  257 (504)
T ss_dssp             EECCCTTCEECCT----TSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HH---HHH-
T ss_pred             EEEECCCCEEcCC----CCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCH--HH---HHH-
Confidence            9999999987633    22334567999999999876 4689999999999999999999999975311  11   110 


Q ss_pred             hhccccchhhhcccccCCC---cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          756 KVDTKEGIMEVLDKKLSGS---FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                               .+........   +......+.+++.+|++.||.+|||+.|++++-
T Consensus       258 ---------~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~  303 (504)
T 3q5i_A          258 ---------KVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSR  303 (504)
T ss_dssp             ---------HHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             ---------HHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCH
Confidence                     0001111000   112235677888899999999999999999874

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2.6e-39  Score=355.02  Aligned_cols=243  Identities=17%  Similarity=0.153  Sum_probs=186.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHH---HHHhccCCCCcceee---
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV---ETLGNIRHKNIVKLY---  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~---~~l~~l~h~niv~l~---  598 (840)
                      +.|...+.||+|+||.||+|.. .+|+.||||++......       .....+.+.+|+   +.+++++||||++++   
T Consensus        73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~-------~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~  145 (377)
T 3byv_A           73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERP-------PSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRF  145 (377)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-C-------CTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCB
T ss_pred             ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeecccc-------chHHHHHHHHHHHHHHhccccCCHHHHHHHhhh
Confidence            4677788999999999999975 57999999998643211       122356788999   555666899999998   


Q ss_pred             ----eEEecCc-----------------cceEEEeecCCCChHHHhhcCCC------CCChHHHHHHHHHHHHHHHHHhh
Q 003199          599 ----CYFSSLY-----------------CNLLVYEYMPNGNLWDALHKGLV------HLDWPTRHKIAFGVAQGLAYLHH  651 (840)
Q Consensus       599 ----~~~~~~~-----------------~~~lV~e~~~~gsL~~~l~~~~~------~~~~~~~~~i~~~i~~~l~~LH~  651 (840)
                          +++.+..                 ..++||||+ +|+|.+++.....      .+++..+..++.||+.||+|||+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  224 (377)
T 3byv_A          146 IFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH  224 (377)
T ss_dssp             CCCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh
Confidence                5555443                 268999999 6899999986421      23358888999999999999999


Q ss_pred             cCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccC-----------CCCccc
Q 003199          652 GLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-----------KATTKC  720 (840)
Q Consensus       652 ~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~  720 (840)
                         ++|+||||||+|||++.++.+||+|||+|+...      .......| +.|+|||++.+.           .++.++
T Consensus       225 ---~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~------~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~  294 (377)
T 3byv_A          225 ---YGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG------ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSF  294 (377)
T ss_dssp             ---TTEECSCCCGGGEEECTTCCEEECCGGGCEETT------CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHH
T ss_pred             ---CCeecCCCCHHHEEEcCCCCEEEEechhheecC------CcccCCCC-cCccChhhhcccccccccccccccCChhh
Confidence               999999999999999999999999999997532      13345567 999999999887           899999


Q ss_pred             cchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH
Q 003199          721 DVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM  800 (840)
Q Consensus       721 Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~  800 (840)
                      |||||||++|||++|+.||........               ...... .. ..   ....+.+++.+||+.||++|||+
T Consensus       295 DvwSlG~il~elltg~~Pf~~~~~~~~---------------~~~~~~-~~-~~---~~~~~~~li~~~L~~dp~~Rpt~  354 (377)
T 3byv_A          295 DAWALGLVIYWIWCADLPITKDAALGG---------------SEWIFR-SC-KN---IPQPVRALLEGFLRYPKEDRLLP  354 (377)
T ss_dssp             HHHHHHHHHHHHHHSSCCC------CC---------------SGGGGS-SC-CC---CCHHHHHHHHHHTCSSGGGCCCH
T ss_pred             hHHHHHHHHHHHHHCCCCCcccccccc---------------hhhhhh-hc-cC---CCHHHHHHHHHHcCCCchhCCCH
Confidence            999999999999999999975321110               000000 00 11   23456778889999999999999


Q ss_pred             HHHHHH
Q 003199          801 NEVVQL  806 (840)
Q Consensus       801 ~evl~~  806 (840)
                      .|++++
T Consensus       355 ~e~l~h  360 (377)
T 3byv_A          355 LQAMET  360 (377)
T ss_dssp             HHHHTS
T ss_pred             HHHhhC
Confidence            999874

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=6.8e-38  Score=342.75  Aligned_cols=260  Identities=23%  Similarity=0.284  Sum_probs=192.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|...+.||+|+||.||+|.. .+|+.||||++.....        .....+.+.+|+.+++.++||||+++++++..
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   95 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ--------NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTP   95 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS--------SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC--------ChHHHHHHHHHHHHHHhcCCCCccceEEeecc
Confidence            35788899999999999999954 5789999999854321        12345678899999999999999999999976


Q ss_pred             Cc------cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 LY------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 ~~------~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      ..      ..++||||++ |+|.+.+..   .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||
T Consensus        96 ~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl  168 (371)
T 2xrw_A           96 QKSLEEFQDVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKI  168 (371)
T ss_dssp             CCSTTTCCEEEEEEECCS-EEHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEE
T ss_pred             ccccccccceEEEEEcCC-CCHHHHHhh---ccCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEE
Confidence            54      6799999996 578888864   58999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +|||+++....    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+...    ...+.....
T Consensus       169 ~Dfg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~~~i~~  240 (371)
T 2xrw_A          169 LDFGLARTAGT----SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH----IDQWNKVIE  240 (371)
T ss_dssp             CCCCC--------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHC
T ss_pred             EEeeccccccc----ccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHH
Confidence            99999986532    2223456799999999999998999999999999999999999999975321    111111100


Q ss_pred             cccc--------------------------chhhhccccc-CCC---cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTKE--------------------------GIMEVLDKKL-SGS---FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~--------------------------~~~~~~~~~~-~~~---~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ....                          .......... +..   .......+.+++.+|++.||++|||++|++++=
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp  320 (371)
T 2xrw_A          241 QLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHP  320 (371)
T ss_dssp             -CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred             HhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCc
Confidence            0000                          0000000000 001   122356788999999999999999999999874

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=345.63  Aligned_cols=265  Identities=14%  Similarity=0.138  Sum_probs=202.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC---------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS---------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~  596 (840)
                      ++|+..+.||+|+||.||+|....         ++.||||++...               +.+.+|++++++++||||++
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---------------~~~~~E~~~l~~l~h~niv~  106 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---------------GRLFNEQNFFQRAAKPLQVN  106 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---------------STHHHHHHHHHHHCCHHHHH
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---------------chHHHHHHHHHHhcccchhh
Confidence            468888999999999999997653         789999998432               24678999999999999988


Q ss_pred             ---------------eeeEEec-CccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEe
Q 003199          597 ---------------LYCYFSS-LYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIH  659 (840)
Q Consensus       597 ---------------l~~~~~~-~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH  659 (840)
                                     +++++.. ....++||||+ +++|.+++... ...+++.++..++.|++.||+|||+   ++|+|
T Consensus       107 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH  182 (352)
T 2jii_A          107 KWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHE---NEYVH  182 (352)
T ss_dssp             HHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCBC
T ss_pred             hhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHh---CCccC
Confidence                           5667665 67789999999 99999999875 3479999999999999999999999   99999


Q ss_pred             cCCCCCCEEEcCCC--CCeeecccchhhhhccCCC----CcceecccccccccCccccccCCCCccccchhHHHHHHHHH
Q 003199          660 RDIKSTNILLDVNY--QPKVADFGIAKVLQARGGK----DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELI  733 (840)
Q Consensus       660 ~Dlk~~Nill~~~~--~~kl~Dfg~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~  733 (840)
                      |||||+||+++.++  .+||+|||+++.+......    ........||+.|+|||++.+..++.++|||||||++|||+
T Consensus       183 ~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~  262 (352)
T 2jii_A          183 GNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWL  262 (352)
T ss_dssp             SCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence            99999999999998  8999999999876442211    11224457999999999999989999999999999999999


Q ss_pred             hCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          734 TGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       734 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      +|+.||....................   .....+...  ........+.+++.+||+.||++|||+.++++.|+++...
T Consensus       263 ~g~~pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  337 (352)
T 2jii_A          263 YGFLPWTNCLPNTEDIMKQKQKFVDK---PGPFVGPCG--HWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQD  337 (352)
T ss_dssp             HSCCTTGGGTTCHHHHHHHHHHHHHS---CCCEECTTS--CEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             hCCCCcccCCcCHHHHHHHHHhccCC---hhhhhhhcc--ccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHh
Confidence            99999976432221111111100000   001111000  0011235677788899999999999999999999876544


Q ss_pred             C
Q 003199          814 R  814 (840)
Q Consensus       814 ~  814 (840)
                      .
T Consensus       338 ~  338 (352)
T 2jii_A          338 L  338 (352)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=6.2e-38  Score=336.55  Aligned_cols=263  Identities=24%  Similarity=0.364  Sum_probs=197.6

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ..+.++|...+.||+|+||.||+|.. .+++.||||++........  ..........+.+|++++++++||||++++++
T Consensus         6 ~~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   83 (322)
T 2ycf_A            6 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIG--SAREADPALNVETEIEILKKLNHPCIIKIKNF   83 (322)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC-----------------CHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hhhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhc--ccccchhhhhHHHHHHHHHhCCCCCCceEeeE
Confidence            45667899999999999999999965 4689999999854432110  01112234568899999999999999999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC---Cee
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ---PKV  677 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl  677 (840)
                      +.... .++||||+++++|.+++.... .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.   +||
T Consensus        84 ~~~~~-~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl  158 (322)
T 2ycf_A           84 FDAED-YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKI  158 (322)
T ss_dssp             EESSS-EEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSSSCCEEE
T ss_pred             EcCCc-eEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEecCCCCCeEEE
Confidence            87655 799999999999999987654 78999999999999999999999   99999999999999987654   999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +|||+++....    ........||+.|+|||++.   ...++.++|||||||++|||++|+.||....... .......
T Consensus       159 ~Dfg~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~  233 (322)
T 2ycf_A          159 TDFGHSKILGE----TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQIT  233 (322)
T ss_dssp             CCCTTCEECCC----CHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS-CHHHHHH
T ss_pred             ccCccceeccc----ccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH-HHHHHHH
Confidence            99999976522    22234467899999999873   4678999999999999999999999997532211 1111100


Q ss_pred             hhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         ....       .............+.+++.+|++.||++||++.+++++
T Consensus       234 ---~~~~-------~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h  275 (322)
T 2ycf_A          234 ---SGKY-------NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  275 (322)
T ss_dssp             ---HTCC-------CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ---hCcc-------ccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence               0000       00000001123567788889999999999999999864

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=1.8e-38  Score=345.14  Aligned_cols=268  Identities=23%  Similarity=0.303  Sum_probs=201.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|+..+.||+|+||.||+|.. .+|+.||||++.......        .....+.+|+++++.++||||+++++++...
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--------~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   88 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE--------GFPITALREIKILQLLKHENVVNLIEICRTK   88 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS--------SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc--------cchHHHHHHHHHHHhccCCCcccHhheeecc
Confidence            5788999999999999999966 579999999985443221        1134567899999999999999999998763


Q ss_pred             --------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCe
Q 003199          605 --------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPK  676 (840)
Q Consensus       605 --------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~k  676 (840)
                              ...++||||++ |++.+.+......+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+|
T Consensus        89 ~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~k  164 (351)
T 3mi9_A           89 ASPYNRCKGSIYLVFDFCE-HDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLK  164 (351)
T ss_dssp             --------CEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEE
T ss_pred             ccccccCCceEEEEEeccC-CCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCCEE
Confidence                    45789999997 58888887766679999999999999999999999   9999999999999999999999


Q ss_pred             eecccchhhhhccCC-CCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          677 VADFGIAKVLQARGG-KDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      |+|||+++.+..... .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....  ........
T Consensus       165 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~i~  242 (351)
T 3mi9_A          165 LADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTE--QHQLALIS  242 (351)
T ss_dssp             ECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHH
T ss_pred             EccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHH
Confidence            999999987643211 1223345678999999998876 4579999999999999999999999975321  11100000


Q ss_pred             -hhhcc-ccchhhh--------c--ccccCCCcHHH------HHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          755 -IKVDT-KEGIMEV--------L--DKKLSGSFRDE------MIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       755 -~~~~~-~~~~~~~--------~--~~~~~~~~~~~------~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                       ..... .......        .  .........+.      ...+.+++.+|++.||++|||++|++++-
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp  313 (351)
T 3mi9_A          243 QLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD  313 (351)
T ss_dssp             HHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             HHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCC
Confidence             00000 0000000        0  00001111111      24577899999999999999999999874

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2.5e-38  Score=341.32  Aligned_cols=252  Identities=22%  Similarity=0.356  Sum_probs=204.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|...+.||+|+||.||+|... +++.||+|++......       .....+.+.+|+.+++.++||||+++++++.+.
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~-------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  113 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLL-------KPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN  113 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC-------SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhc-------CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Confidence            56888899999999999999665 6889999998543211       123456788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++++|.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++
T Consensus       114 ~~~~lv~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~  189 (335)
T 2owb_A          114 DFVFVVLELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLAT  189 (335)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CeEEEEEecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCCCEEEeeccCce
Confidence            99999999999999999987654 68999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....   ........||+.|+|||.+.+..++.++||||||+++|||++|+.||.....    ...+......      
T Consensus       190 ~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~~~~~~~------  256 (335)
T 2owb_A          190 KVEYD---GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL----KETYLRIKKN------  256 (335)
T ss_dssp             ECCST---TCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHHHHHT------
T ss_pred             ecccC---cccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH----HHHHHHHhcC------
Confidence            65321   2223456799999999999988999999999999999999999999975311    1111111000      


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                         ...+...+   ...+.+++.+||+.||++|||+.|++++-
T Consensus       257 ---~~~~~~~~---~~~~~~li~~~l~~dp~~Rps~~ell~~~  293 (335)
T 2owb_A          257 ---EYSIPKHI---NPVAASLIQKMLQTDPTARPTINELLNDE  293 (335)
T ss_dssp             ---CCCCCTTS---CHHHHHHHHHHTCSSGGGSCCGGGGGGSH
T ss_pred             ---CCCCCccC---CHHHHHHHHHHccCChhHCcCHHHHhcCc
Confidence               01112222   23566788899999999999999999863

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=2.1e-38  Score=345.87  Aligned_cols=262  Identities=24%  Similarity=0.374  Sum_probs=202.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|... +|+.||+|++....         .....+.+.+|+.+++.++||||+++++++.+.
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  103 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---------KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD  103 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC---------CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEET
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc---------CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEEC
Confidence            46888899999999999999665 78999999985432         123456789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLS-PIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+++++|.+++.... .+++..+..++.+++.||+|||+   . +|+||||||+||+++.++.+||+|||++
T Consensus       104 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  179 (360)
T 3eqc_A          104 GEISICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLRE---KHKIMHRDVKPSNILVNSRGEIKLCDFGVS  179 (360)
T ss_dssp             TEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---HHCCCCSCCSGGGEEECTTCCEEECCCCCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---hCCEEcCCccHHHEEECCCCCEEEEECCCC
Confidence            99999999999999999998764 68999999999999999999998   6 8999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh-------
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK-------  756 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~-------  756 (840)
                      +.....     ......||+.|+|||++.+..++.++|||||||++|||++|+.||.......  ........       
T Consensus       180 ~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~  252 (360)
T 3eqc_A          180 GQLIDS-----MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE--LELMFGCQVEGDAAE  252 (360)
T ss_dssp             HHHHHH-----C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHH--HHHHHC---------
T ss_pred             cccccc-----cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHhcccccccCCC
Confidence            776432     2234578999999999999999999999999999999999999997532100  00000000       


Q ss_pred             ------------------hccccchhh----hcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          757 ------------------VDTKEGIME----VLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       757 ------------------~~~~~~~~~----~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                                        ........+    .......... ......+.+++.+|++.||++|||+.|++++-
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  326 (360)
T 3eqc_A          253 TPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHA  326 (360)
T ss_dssp             ---------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSH
T ss_pred             CCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhCh
Confidence                              000000000    0000000000 11234577888899999999999999999874

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.9e-38  Score=335.67  Aligned_cols=254  Identities=26%  Similarity=0.336  Sum_probs=198.5

Q ss_pred             HHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          523 EILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       523 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ...+.|+..+.||+|+||.||+|... +|+.||||++....            ..+.+.+|+.++++++||||+++++++
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~------------~~~~~~~e~~~l~~l~h~~i~~~~~~~   93 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES------------DLQEIIKEISIMQQCDSPHVVKYYGSY   93 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS------------CCHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH------------HHHHHHHHHHHHHhCCCCCCccEEEEE
Confidence            34567889999999999999999665 69999999985432            124578899999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ......++||||+++++|.+++......+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg  170 (314)
T 3com_A           94 FKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFG  170 (314)
T ss_dssp             EETTEEEEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCT
T ss_pred             EeCCEEEEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCcCHHHEEECCCCCEEEeecc
Confidence            99999999999999999999997555579999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      ++.....   .........||+.|+|||.+.+..++.++||||||+++|||++|+.||.....    ...........  
T Consensus       171 ~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~--  241 (314)
T 3com_A          171 VAGQLTD---TMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHP----MRAIFMIPTNP--  241 (314)
T ss_dssp             TCEECBT---TBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHSC--
T ss_pred             cchhhhh---hccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCCh----HHHHHHHhcCC--
Confidence            9976533   12223445789999999999998999999999999999999999999975311    10000000000  


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                            .... .........+.+++.+|++.||.+|||+.+++++-
T Consensus       242 ------~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~  280 (314)
T 3com_A          242 ------PPTF-RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHP  280 (314)
T ss_dssp             ------CCCC-SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSH
T ss_pred             ------Cccc-CCcccCCHHHHHHHHHHccCChhhCcCHHHHHhCH
Confidence                  0000 00111234577788899999999999999998753

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.5e-38  Score=348.26  Aligned_cols=255  Identities=11%  Similarity=0.009  Sum_probs=181.5

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc--CCCCcceee-----
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI--RHKNIVKLY-----  598 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~-----  598 (840)
                      .|...+.||+|+||.||+|... +|+.||||++.....       ......+.+.+|+.+++.+  +||||++++     
T Consensus        63 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~  135 (371)
T 3q60_A           63 KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAE-------NSRSELERLHEATFAAARLLGESPEEARDRRRLLL  135 (371)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCST-------THHHHHHHHHHHHHHHHHHHC----------CBCC
T ss_pred             eeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEeccc-------ccccHHHHHHHHHHHHHHhcccChhhhhhceeEEe
Confidence            4777889999999999999754 799999999965431       1233456677885544444  699988755     


Q ss_pred             --eEEecC-----------------ccceEEEeecCCCChHHHhhcCCCCCChHHH------HHHHHHHHHHHHHHhhcC
Q 003199          599 --CYFSSL-----------------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTR------HKIAFGVAQGLAYLHHGL  653 (840)
Q Consensus       599 --~~~~~~-----------------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~------~~i~~~i~~~l~~LH~~~  653 (840)
                        +++...                 ...++||||++ |+|.+++......+.+..+      ..++.||+.||+|||+  
T Consensus       136 p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~--  212 (371)
T 3q60_A          136 PSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS--  212 (371)
T ss_dssp             CCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             eehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHH--
Confidence              333322                 33799999998 8999999875445667777      7888999999999999  


Q ss_pred             CCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCcccccc--CCCCccccchhHHHHHHH
Q 003199          654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLME  731 (840)
Q Consensus       654 ~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~e  731 (840)
                       ++|+||||||+|||++.++.+||+|||+|+....      ......+|+.|+|||++.+  ..++.++|||||||++||
T Consensus       213 -~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~e  285 (371)
T 3q60_A          213 -KGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT------RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYR  285 (371)
T ss_dssp             -TTEEETTCSGGGEEECTTSCEEECCGGGEEETTC------EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHH
T ss_pred             -CCCccCcCCHHHEEECCCCCEEEEecceeeecCC------CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHH
Confidence             9999999999999999999999999999986522      2224567799999999987  679999999999999999


Q ss_pred             HHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhccccc-CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          732 LITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKL-SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       732 l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      |++|+.||..........  |.....      ........ .+........+.+++.+||+.||++|||+.|++++
T Consensus       286 lltg~~Pf~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  353 (371)
T 3q60_A          286 VWCLFLPFGLVTPGIKGS--WKRPSL------RVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMET  353 (371)
T ss_dssp             HHHSSCSTTBCCTTCTTC--CCBCCT------TSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTS
T ss_pred             HHhCCCCCCCcCcccccc--hhhhhh------hhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            999999997643221110  100000      00000000 01111234567778889999999999999999864

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=5e-38  Score=338.75  Aligned_cols=257  Identities=19%  Similarity=0.275  Sum_probs=197.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~  603 (840)
                      ++|+..+.||+|+||.||+|.. .+++.||||++....             .+.+.+|++++++++ ||||+++++++.+
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------------~~~~~~E~~~l~~l~~~~~i~~~~~~~~~  102 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK-------------KKKIKREIKILENLRGGPNIITLADIVKD  102 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC-------------HHHHHHHHHHHHHHTTSTTBCCEEEEEEC
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc-------------hHHHHHHHHHHHHcCCCCCEEEeeeeecc
Confidence            5788899999999999999954 579999999984321             356889999999997 9999999999987


Q ss_pred             --CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-CCeeecc
Q 003199          604 --LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADF  680 (840)
Q Consensus       604 --~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~Df  680 (840)
                        ....++||||+++++|.+++.    .+++.++..++.|++.||+|||+   ++|+||||||+||+++.++ .+||+||
T Consensus       103 ~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Df  175 (330)
T 3nsz_A          103 PVSRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDW  175 (330)
T ss_dssp             TTTCCEEEEEECCCCCCHHHHGG----GCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCC
T ss_pred             CCCCceEEEEeccCchhHHHHHH----hCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeC
Confidence              567799999999999999885    37899999999999999999999   9999999999999999776 8999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc-
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD-  758 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~-  758 (840)
                      |+++....    ........||+.|+|||.+.+ ..++.++|||||||++|||++|+.||................... 
T Consensus       176 g~a~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~  251 (330)
T 3nsz_A          176 GLAEFYHP----GQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTE  251 (330)
T ss_dssp             TTCEECCT----TCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHH
T ss_pred             CCceEcCC----CCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCc
Confidence            99976533    223345578999999999877 678999999999999999999999996432211111111000000 


Q ss_pred             ------------cccchhhhcccc--------cC-CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 ------------TKEGIMEVLDKK--------LS-GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ------------~~~~~~~~~~~~--------~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                                  ............        .. .........+.+++.+|++.||++|||++|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h  320 (330)
T 3nsz_A          252 DLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  320 (330)
T ss_dssp             HHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                        000000000000        00 0011134567888889999999999999999986

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=1.3e-37  Score=349.09  Aligned_cols=260  Identities=20%  Similarity=0.240  Sum_probs=202.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC-CCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH-KNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~  603 (840)
                      ++|...+.||+|+||.||+|.. .+++.||||++......            ..+.+|+++++.+.| +++..+..++..
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~------------~~~~~E~~il~~L~~~~~i~~i~~~~~~   74 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH------------PQLLYESKIYRILQGGTGIPNVRWFGVE   74 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS------------CCHHHHHHHHHHTTTSTTCCCEEEEEEE
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc------------HHHHHHHHHHHHhcCCCCCCeEEEEEee
Confidence            5788899999999999999965 57999999987543311            236789999999987 556666666777


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE---cCCCCCeeecc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL---DVNYQPKVADF  680 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~Df  680 (840)
                      ....++||||+ +++|.+++......+++.+++.|+.||+.||+|||+   ++||||||||+|||+   +.++.+||+||
T Consensus        75 ~~~~~lvme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DF  150 (483)
T 3sv0_A           75 GDYNVLVMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDF  150 (483)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCC
T ss_pred             CCEEEEEEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeC
Confidence            88889999999 999999998765679999999999999999999999   999999999999999   68899999999


Q ss_pred             cchhhhhccCCCC----cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          681 GIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       681 g~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |+++.+.......    .......||+.|+|||++.+..++.++|||||||++|||++|+.||........... +....
T Consensus       151 Gla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~-~~~i~  229 (483)
T 3sv0_A          151 GLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQK-YEKIS  229 (483)
T ss_dssp             TTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHH-HHHHH
T ss_pred             CcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHH-HHHHh
Confidence            9998765422211    122356799999999999999999999999999999999999999986432211111 11000


Q ss_pred             hc-cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          757 VD-TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       757 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .. ......     .+..   ....++.+++.+||+.||++||++.+|++.|+++
T Consensus       230 ~~~~~~~~~-----~l~~---~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l  276 (483)
T 3sv0_A          230 EKKVATSIE-----ALCR---GYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL  276 (483)
T ss_dssp             HHHHHSCHH-----HHHT---TSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             hccccccHH-----HHhc---CCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence            00 000000     0001   1234677888899999999999999999998765

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=3.2e-38  Score=335.72  Aligned_cols=253  Identities=22%  Similarity=0.280  Sum_probs=197.0

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .+.|+..+.||+|+||.||+|... +|+.||+|++....          ....+.+.+|+++++.++||||+++++++..
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~----------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   87 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS----------EEELEDYIVEIEILATCDHPYIVKLLGAYYH   87 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC--------------CCHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCC----------HHHHHHHHHHHHHHhcCCCCCEeeeeeeeee
Confidence            357888999999999999999765 68999999984332          1224678899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||||+++++|.+++......+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||++
T Consensus        88 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  164 (302)
T 2j7t_A           88 DGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVS  164 (302)
T ss_dssp             C-CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred             CCeEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCCCEEEEECCCC
Confidence            999999999999999999988755679999999999999999999999   99999999999999999999999999998


Q ss_pred             hhhhccCCCCcceecccccccccCcccc-----ccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYA-----YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      ......   ........||+.|+|||++     .+..++.++||||||+++|||++|+.||.....     .........
T Consensus       165 ~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~  236 (302)
T 2j7t_A          165 AKNLKT---LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP-----MRVLLKIAK  236 (302)
T ss_dssp             HHHHHH---HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHHHH
T ss_pred             cccccc---ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCH-----HHHHHHHhc
Confidence            654321   1122345789999999988     356789999999999999999999999975311     000000000


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      . .      ... ..........+.+++.+|++.||++|||+.+++++
T Consensus       237 ~-~------~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  276 (302)
T 2j7t_A          237 S-D------PPT-LLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH  276 (302)
T ss_dssp             S-C------CCC-CSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred             c-C------Ccc-cCCccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            0 0      000 00111223456778889999999999999999875

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1.4e-37  Score=346.92  Aligned_cols=203  Identities=26%  Similarity=0.346  Sum_probs=167.5

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|...+.||+|+||.||+|.. .+|+.||||++....        ......+.+.+|+++++.++||||+++++++..
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~--------~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~   96 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF--------EDLIDCKRILREITILNRLKSDYIIRLYDLIIP   96 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT--------TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh--------cChHHHHHHHHHHHHHHHcCCCCcceEEEEEec
Confidence            45788899999999999999955 578999999985322        123445778999999999999999999999876


Q ss_pred             C-----ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          604 L-----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       604 ~-----~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      .     ...++||||++ |+|.+++.... .+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+
T Consensus        97 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~-~l~~~~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~~kL~  171 (432)
T 3n9x_A           97 DDLLKFDELYIVLEIAD-SDLKKLFKTPI-FLTEEHIKTILYNLLLGENFIHE---SGIIHRDLKPANCLLNQDCSVKVC  171 (432)
T ss_dssp             SCTTTCCCEEEEEECCS-EEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEEC
T ss_pred             CCCCcCCeEEEEEecCC-cCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHeEECCCCCEEEc
Confidence            5     56899999995 69999998754 69999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCC-------------------cceecccccccccCcccc-ccCCCCccccchhHHHHHHHHHhCCCC
Q 003199          679 DFGIAKVLQARGGKD-------------------STTTVIAGTYGYLAPEYA-YSSKATTKCDVYSFGVVLMELITGRKP  738 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~-------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~tg~~p  738 (840)
                      |||+|+.........                   .......||+.|+|||++ ....++.++||||+||++|||++|..|
T Consensus       172 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p  251 (432)
T 3n9x_A          172 DFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQS  251 (432)
T ss_dssp             CCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTT
T ss_pred             cCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccc
Confidence            999998764321110                   123567899999999986 566799999999999999999986666


Q ss_pred             CC
Q 003199          739 VE  740 (840)
Q Consensus       739 ~~  740 (840)
                      |.
T Consensus       252 ~~  253 (432)
T 3n9x_A          252 HI  253 (432)
T ss_dssp             TC
T ss_pred             cc
Confidence            54

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=6.1e-38  Score=342.63  Aligned_cols=278  Identities=21%  Similarity=0.243  Sum_probs=200.1

Q ss_pred             HHHHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEeccccccccc-CchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          521 QREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSA-SDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       521 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ...+.+.|...+.||+|+||.||+|...+|+.||||++......... .........+.+.+|++++++++||||+++++
T Consensus        17 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   96 (362)
T 3pg1_A           17 LHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRD   96 (362)
T ss_dssp             HHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSE
T ss_pred             HHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceee
Confidence            34556789999999999999999998888999999998654322111 01122344578999999999999999999999


Q ss_pred             EEec-----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          600 YFSS-----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       600 ~~~~-----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      ++..     ....++||||++ |+|.+.+......+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.
T Consensus        97 ~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~  172 (362)
T 3pg1_A           97 IFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHE---AGVVHRDLHPGNILLADNND  172 (362)
T ss_dssp             EEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCC
T ss_pred             eEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CcCEecCCChHHEEEcCCCC
Confidence            9843     335699999997 78999888776679999999999999999999999   99999999999999999999


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      +||+|||+++....    ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... .......
T Consensus       173 ~kl~Dfg~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~i~  247 (362)
T 3pg1_A          173 ITICDFNLAREDTA----DANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFY-NQLNKIV  247 (362)
T ss_dssp             EEECCTTC-------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHH
T ss_pred             EEEEecCccccccc----ccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHH-HHHHHHH
Confidence            99999999975432    223345678999999998876 67899999999999999999999999753210 0000000


Q ss_pred             hhhhcc---------ccchhhhccccc----CCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          754 SIKVDT---------KEGIMEVLDKKL----SGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       754 ~~~~~~---------~~~~~~~~~~~~----~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ......         ............    ....    ......+.+++.+|++.||++|||+.|++++-
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  318 (362)
T 3pg1_A          248 EVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHP  318 (362)
T ss_dssp             HHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred             HHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCc
Confidence            000000         000000000000    0111    11235577889999999999999999999873

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=9.5e-38  Score=331.40  Aligned_cols=262  Identities=26%  Similarity=0.329  Sum_probs=205.9

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEE
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYF  601 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~  601 (840)
                      ..++|...+.||+|+||.||+|... +|+.||||++....... ..........+.+.+|+++++++. ||||+++++++
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGS-FSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTT-CCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccc-cCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            3467888999999999999999664 78999999985543211 111223344677899999999995 99999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      ......++||||+++++|.+++.... .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg  169 (298)
T 1phk_A           94 ETNTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFG  169 (298)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             ccCCeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCCCcEEEeccc
Confidence            99999999999999999999998754 68999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccc------cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAY------SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ++.....    ........||+.|+|||++.      ...++.++||||||+++|||++|+.||....    .. .....
T Consensus       170 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~-~~~~~  240 (298)
T 1phk_A          170 FSCQLDP----GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK----QM-LMLRM  240 (298)
T ss_dssp             TCEECCT----TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HH-HHHHH
T ss_pred             chhhcCC----CcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc----HH-HHHHH
Confidence            9976532    22234457899999999874      4568899999999999999999999996531    11 11100


Q ss_pred             hhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ......       ....+........+.+++.+|++.||++|||+.|++++
T Consensus       241 ~~~~~~-------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (298)
T 1phk_A          241 IMSGNY-------QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  284 (298)
T ss_dssp             HHHTCC-------CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             HhcCCc-------ccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence            000000       00011122334567788889999999999999999875

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=3.4e-38  Score=344.47  Aligned_cols=266  Identities=22%  Similarity=0.300  Sum_probs=200.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|+..+.||+|+||.||+|.. .+++.||||++....         .....+.+.+|++++++++||||+++++++...
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~   97 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE---------HQTYCQRTLREIKILLRFRHENIIGINDIIRAP   97 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT---------CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCS
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc---------CcHHHHHHHHHHHHHHhcCCCCCccceeEEecC
Confidence            4688899999999999999965 478999999985321         123456788999999999999999999998654


Q ss_pred             -----ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          605 -----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       605 -----~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                           ...++||||++ |+|.+++...  .+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|
T Consensus        98 ~~~~~~~~~iv~e~~~-~~L~~~l~~~--~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~D  171 (364)
T 3qyz_A           98 TIEQMKDVYIVQDLME-TDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICD  171 (364)
T ss_dssp             STTTCCCEEEEEECCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECC
T ss_pred             CccccceEEEEEcccC-cCHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChHhEEECCCCCEEEEe
Confidence                 36799999996 6999999775  58999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      ||+++................||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..... ...........
T Consensus       172 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~  250 (364)
T 3qyz_A          172 FGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGILGS  250 (364)
T ss_dssp             CTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHHHCS
T ss_pred             CcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHHhCC
Confidence            9999876443222222345689999999998654 458999999999999999999999997642111 00000000000


Q ss_pred             -cccchh--------hh---cccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          759 -TKEGIM--------EV---LDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       759 -~~~~~~--------~~---~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                       ..+...        ..   ........+    ......+.+++.+|++.||++|||+.|++++=
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp  315 (364)
T 3qyz_A          251 PSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHP  315 (364)
T ss_dssp             CCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSG
T ss_pred             CCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCc
Confidence             000000        00   000000000    11235677889999999999999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.2e-37  Score=345.40  Aligned_cols=338  Identities=18%  Similarity=0.170  Sum_probs=273.8

Q ss_pred             cCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCc
Q 003199           24 LSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNF  103 (840)
Q Consensus        24 Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  103 (840)
                      ...+.+....+..++++++|++|+|++|   .+..+|  .+..+++|++|+|++|.+++. |  ++.+++|++|+|++|.
T Consensus        25 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~   96 (457)
T 3bz5_A           25 AAAFEMQATDTISEEQLATLTSLDCHNS---SITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNK   96 (457)
T ss_dssp             HHHTTCCTTSEEEHHHHTTCCEEECCSS---CCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSC
T ss_pred             HHhcCcCcccccChhHcCCCCEEEccCC---CcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCC
Confidence            3344455566778899999999999999   566665  589999999999999999864 3  8899999999999999


Q ss_pred             ccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccch
Q 003199          104 ITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS  183 (840)
Q Consensus       104 i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  183 (840)
                      +++. |  +..+++|++|++++|+ +. .+|  +..+++|++|++++|++++. +  +..+++|++|++++|+..+..  
T Consensus        97 l~~~-~--~~~l~~L~~L~L~~N~-l~-~l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--  164 (457)
T 3bz5_A           97 LTNL-D--VTPLTKLTYLNCDTNK-LT-KLD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--  164 (457)
T ss_dssp             CSCC-C--CTTCTTCCEEECCSSC-CS-CCC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--
T ss_pred             Ccee-e--cCCCCcCCEEECCCCc-CC-eec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--
Confidence            9964 4  8899999999999997 33 344  88999999999999999964 3  888999999999999544343  


Q ss_pred             hhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCC
Q 003199          184 VIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNL  263 (840)
Q Consensus       184 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  263 (840)
                      .+..+++|++|++++|++++ +|  +..+++|+.|++++|++++.   .+..+++|++|++++|++.+ +|  +..+++|
T Consensus       165 ~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L  235 (457)
T 3bz5_A          165 DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL  235 (457)
T ss_dssp             CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred             ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence            47889999999999999996 34  78889999999999999865   37777888888888888877 34  7777888


Q ss_pred             ceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCC
Q 003199          264 LRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDN  343 (840)
Q Consensus       264 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  343 (840)
                      +.|++++|++++..   +..+++|+.|++++|              +|+.|++++|.+.+.+|  +..+++|+.|+|++|
T Consensus       236 ~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          236 TYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHN  296 (457)
T ss_dssp             SEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred             CEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCC
Confidence            88888888887543   445677777777765              46678899998877776  467899999999999


Q ss_pred             ccCCCCCC--------cccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhccCCCeEEccCCC
Q 003199          344 LLSGPIPS--------GIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNR  415 (840)
Q Consensus       344 ~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~  415 (840)
                      ...+.+|.        .+.++++|+.|+|++|+|++. +  ++.+++|+.||+++|+|++ +|      .+..|++++|+
T Consensus       297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l~------~L~~L~l~~n~  366 (457)
T 3bz5_A          297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-FS------SVGKIPALNNN  366 (457)
T ss_dssp             TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-CT------TGGGSSGGGTS
T ss_pred             cccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-cc------ccccccccCCc
Confidence            87766654        256678999999999999974 3  8999999999999999997 33      23456789999


Q ss_pred             CcCc
Q 003199          416 LSGP  419 (840)
Q Consensus       416 l~~~  419 (840)
                      ++|.
T Consensus       367 l~g~  370 (457)
T 3bz5_A          367 FEAE  370 (457)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9887

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.9e-38  Score=346.69  Aligned_cols=269  Identities=21%  Similarity=0.308  Sum_probs=183.0

Q ss_pred             HHHhcCc-cCeeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          524 ILEAMTE-KNKVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       524 ~~~~~~~-~~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      +.+.|.. .++||+|+||+||+|...   +++.||||++.....            ...+.+|++++++++||||+++++
T Consensus        18 ~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~------------~~~~~~E~~~l~~l~hpniv~~~~   85 (405)
T 3rgf_A           18 VEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI------------SMSACREIALLRELKHPNVISLQK   85 (405)
T ss_dssp             HHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC------------CHHHHHHHHHHHHCCCTTBCCCCE
T ss_pred             hhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC------------CHHHHHHHHHHHhcCCCCeeeEee
Confidence            4455665 568999999999999765   578999999853321            135778999999999999999999


Q ss_pred             EEe--cCccceEEEeecCCCChHHHhhcC--------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE
Q 003199          600 YFS--SLYCNLLVYEYMPNGNLWDALHKG--------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL  669 (840)
Q Consensus       600 ~~~--~~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill  669 (840)
                      ++.  .....++||||++ |+|.+++...        ...+++..++.++.||+.||+|||+   .+|+||||||+|||+
T Consensus        86 ~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll  161 (405)
T 3rgf_A           86 VFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILV  161 (405)
T ss_dssp             EEEETTTTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEE
T ss_pred             EEecCCCCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEE
Confidence            994  4677899999996 5888877532        1248999999999999999999999   999999999999999


Q ss_pred             ----cCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCC
Q 003199          670 ----DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFG  744 (840)
Q Consensus       670 ----~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~  744 (840)
                          +.++.+||+|||+|+................||+.|+|||++.+. .++.++|||||||++|||++|+.||.....
T Consensus       162 ~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~  241 (405)
T 3rgf_A          162 MGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQE  241 (405)
T ss_dssp             CCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC-
T ss_pred             ecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccc
Confidence                677899999999998765422222334556899999999998874 589999999999999999999999975432


Q ss_pred             CCcc--------hhhhhhhh-hccccchh-------------hhcccccCC-CcHH--------HHHHHHHHHHHccCCC
Q 003199          745 DNKN--------IIYWVSIK-VDTKEGIM-------------EVLDKKLSG-SFRD--------EMIQVLRIAIRCTSKS  793 (840)
Q Consensus       745 ~~~~--------~~~~~~~~-~~~~~~~~-------------~~~~~~~~~-~~~~--------~~~~l~~l~~~cl~~d  793 (840)
                      ....        +....... ......+.             ......... ....        ....+.+++.+|++.|
T Consensus       242 ~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~d  321 (405)
T 3rgf_A          242 DIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMD  321 (405)
T ss_dssp             -----CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSS
T ss_pred             cccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCC
Confidence            1100        00000000 00000000             000000000 0000        1345778999999999


Q ss_pred             CCCCCCHHHHHHHhh
Q 003199          794 PATRPTMNEVVQLLA  808 (840)
Q Consensus       794 P~~Rps~~evl~~L~  808 (840)
                      |++|||++|++++=.
T Consensus       322 P~~R~ta~e~L~hp~  336 (405)
T 3rgf_A          322 PIKRITSEQAMQDPY  336 (405)
T ss_dssp             GGGSCCHHHHHTSGG
T ss_pred             cccCCCHHHHhcChh
Confidence            999999999999854

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=4.6e-38  Score=368.15  Aligned_cols=252  Identities=25%  Similarity=0.286  Sum_probs=203.1

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      .++|...+.||+|+||+||+|... +++.||||++......       .....+.+..|..++..+ .||+|+++++++.
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~-------~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~  412 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVI-------QDDDVECTMVEKRVLALPGKPPFLTQLHSCFQ  412 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHH-------HTTTTHHHHHHHHHHTCTTCCTTBCCEEEECB
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccc-------cHHHHHHHHHHHHHHHhccCCCeEEEEEEEEE
Confidence            467888999999999999999654 6899999998543211       112245677899999988 7999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      +.+..++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+
T Consensus       413 ~~~~~~lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NILl~~~g~ikL~DFGl  488 (674)
T 3pfq_A          413 TMDRLYFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGM  488 (674)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEEECSSSCEEECCCTT
T ss_pred             eCCEEEEEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeEeccCChhhEEEcCCCcEEEeecce
Confidence            9999999999999999999998764 69999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      |+....   .........||+.|+|||++.+..++.++|||||||++|||++|+.||.+...     ..........   
T Consensus       489 a~~~~~---~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~-----~~~~~~i~~~---  557 (674)
T 3pfq_A          489 CKENIW---DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSIMEH---  557 (674)
T ss_dssp             CEECCC---TTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHSS---
T ss_pred             eecccc---CCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH-----HHHHHHHHhC---
Confidence            975422   22234567899999999999999999999999999999999999999975311     1111111110   


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHH
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM-----NEVVQL  806 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~-----~evl~~  806 (840)
                           ...++..   ...++.+++.+|++.||++||++     +||+++
T Consensus       558 -----~~~~p~~---~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h  598 (674)
T 3pfq_A          558 -----NVAYPKS---MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  598 (674)
T ss_dssp             -----CCCCCTT---SCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred             -----CCCCCcc---CCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence                 0111222   23456778889999999999997     788765

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.6e-38  Score=346.15  Aligned_cols=262  Identities=23%  Similarity=0.285  Sum_probs=182.5

Q ss_pred             HHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||.||+|. ..+|+.||||++.....        .....+.+.+|+++++.++||||+++++++..
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~   99 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ--------SIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   99 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTS--------SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECS
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCcccc--------CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec
Confidence            3678889999999999999995 45799999999854321        12345678899999999999999999999865


Q ss_pred             C------ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 L------YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 ~------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      .      ...++|+||+ +++|.+++...  .+++..+..++.||++||+|||+   .+|+||||||+||+++.++.+||
T Consensus       100 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kL  173 (367)
T 2fst_X          100 ARSLEEFNDVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKI  173 (367)
T ss_dssp             CSSGGGCCCCEEEEECC-CEECC-----C--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEE
T ss_pred             CCccccCCeEEEEeccc-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEEE
Confidence            4      5679999999 78999988763  68999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      +|||+++....      ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ..........
T Consensus       174 ~DFG~a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~  246 (367)
T 2fst_X          174 LDFGLARHTAD------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLV  246 (367)
T ss_dssp             CC---------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHH
T ss_pred             eeccccccccc------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHh
Confidence            99999976532      2334678999999999877 67899999999999999999999999753210 0000000000


Q ss_pred             hcc-ccc--------hhhh---cccccCCCcH----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          757 VDT-KEG--------IMEV---LDKKLSGSFR----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       757 ~~~-~~~--------~~~~---~~~~~~~~~~----~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ... .+.        ....   +.......+.    .....+.+++.+|++.||++|||+.|++++-
T Consensus       247 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp  313 (367)
T 2fst_X          247 GTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHA  313 (367)
T ss_dssp             CSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             CCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcCh
Confidence            000 000        0000   0000011111    1235577888999999999999999999874

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=7.1e-38  Score=331.86  Aligned_cols=250  Identities=24%  Similarity=0.372  Sum_probs=194.4

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      |.....||+|+||.||+|.. .+++.||||.+....          ....+.+.+|+.+++.++||||+++++++.+...
T Consensus        24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   93 (295)
T 2clq_A           24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD----------SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGF   93 (295)
T ss_dssp             TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC----------C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTE
T ss_pred             CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc----------hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCc
Confidence            44556899999999999965 578999999985432          1224668899999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-CCCCeeecccch
Q 003199          607 NLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVADFGIA  683 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~Dfg~a  683 (840)
                      .++||||+++++|.+++....  ..+++..+..++.|++.||+|||+   .+|+||||||+||+++. ++.+||+|||++
T Consensus        94 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~  170 (295)
T 2clq_A           94 IKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTS  170 (295)
T ss_dssp             EEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTC
T ss_pred             EEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeecccc
Confidence            999999999999999998653  346788999999999999999999   99999999999999987 899999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCC--CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK--ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +.....   ........||+.|+|||.+.+..  ++.++||||||+++|||++|+.||.....  .....+ ...     
T Consensus       171 ~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~-~~~-----  239 (295)
T 2clq_A          171 KRLAGI---NPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGE--PQAAMF-KVG-----  239 (295)
T ss_dssp             EESCC--------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSS--HHHHHH-HHH-----
T ss_pred             cccCCC---CCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCc--hhHHHH-hhc-----
Confidence            765321   22234457899999999987643  78999999999999999999999964211  100000 000     


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                        .......+...   ....+.+++.+||+.||++||++.+++++
T Consensus       240 --~~~~~~~~~~~---~~~~~~~li~~~l~~dp~~Rps~~~ll~~  279 (295)
T 2clq_A          240 --MFKVHPEIPES---MSAEAKAFILKCFEPDPDKRACANDLLVD  279 (295)
T ss_dssp             --HHCCCCCCCTT---SCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred             --ccccccccccc---CCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence              00011112222   23456678889999999999999999875

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=4.6e-38  Score=334.72  Aligned_cols=263  Identities=27%  Similarity=0.383  Sum_probs=183.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|.. .+++.||||++.....         ....+.+.+|+.++++++||||+++++++...
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   85 (303)
T 2vwi_A           15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC---------QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVK   85 (303)
T ss_dssp             CCCEEEEECC---CCCEEEEEC----CEEEEECCC-------------------------CCCCCCCTTBCCEEEEEESS
T ss_pred             hhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhc---------chhHHHHHHHHHHHhhcCCCCEeeEEEEEeec
Confidence            4678889999999999999965 4789999998843321         12345688999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhc-------CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          605 YCNLLVYEYMPNGNLWDALHK-------GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~-------~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      +..++||||+++++|.+++..       ....+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||
T Consensus        86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl  162 (303)
T 2vwi_A           86 DELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDGSVQI  162 (303)
T ss_dssp             SCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEE
T ss_pred             CCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCCCEEE
Confidence            999999999999999999874       22458999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCC--CCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          678 ADFGIAKVLQARGG--KDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +|||++......+.  .........||+.|+|||.+.+ ..++.++||||||+++|||++|+.||......  .... ..
T Consensus       163 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~-~~  239 (303)
T 2vwi_A          163 ADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPM--KVLM-LT  239 (303)
T ss_dssp             CCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGG--GHHH-HH
T ss_pred             EeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchh--hHHH-HH
Confidence            99999987643211  1112344579999999998865 56899999999999999999999999753211  1100 00


Q ss_pred             hhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .............+......   ....+.+++.+||+.||++|||+.|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~dp~~Rps~~~ll~h  288 (303)
T 2vwi_A          240 LQNDPPSLETGVQDKEMLKK---YGKSFRKMISLCLQKDPEKRPTAAELLRH  288 (303)
T ss_dssp             HTSSCCCTTC-----CCCCC---CCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             hccCCCccccccccchhhhh---hhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            00000000000111111112   23456778889999999999999999975

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=330.32  Aligned_cols=257  Identities=24%  Similarity=0.304  Sum_probs=196.5

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE-
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF-  601 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-  601 (840)
                      +..+|...+.||+|+||.||+|.. .+++.||||++......      ......+.+.+|++++++++||||+++++++ 
T Consensus         3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~------~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~   76 (305)
T 2wtk_C            3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLR------RIPNGEANVKKEIQLLRRLRHKNVIQLVDVLY   76 (305)
T ss_dssp             --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHH------HSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEecccccc------ccchhHHHHHHHHHHHHhcCCCCeeEEEEEEE
Confidence            346789999999999999999966 47899999998543211      1123356789999999999999999999998 


Q ss_pred             -ecCccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          602 -SSLYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       602 -~~~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                       .+....++||||++++ +.+++... ...+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|
T Consensus        77 ~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~~~kl~d  152 (305)
T 2wtk_C           77 NEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISA  152 (305)
T ss_dssp             CC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECC
T ss_pred             cCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCCcEEeec
Confidence             4456789999999876 76766543 3468999999999999999999999   9999999999999999999999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCC--CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK--ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      ||++...... ..........||+.|+|||++.+..  ++.++||||||+++|||++|+.||....     .........
T Consensus       153 fg~~~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~i~  226 (305)
T 2wtk_C          153 LGVAEALHPF-AADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN-----IYKLFENIG  226 (305)
T ss_dssp             CTTCEECCTT-CSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHHHHHH
T ss_pred             cccccccCcc-ccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHh
Confidence            9999765432 1223334567999999999987644  3789999999999999999999997531     111111000


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ..        .......+   ...+.+++.+|++.||++|||+.|++++-
T Consensus       227 ~~--------~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~~  265 (305)
T 2wtk_C          227 KG--------SYAIPGDC---GPPLSDLLKGMLEYEPAKRFSIRQIRQHS  265 (305)
T ss_dssp             HC--------CCCCCSSS---CHHHHHHHHHHTCSSTTTSCCHHHHHHSH
T ss_pred             cC--------CCCCCCcc---CHHHHHHHHHHccCChhhCCCHHHHhcCc
Confidence            00        01112222   34566788899999999999999999874

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=6.4e-38  Score=365.80  Aligned_cols=255  Identities=22%  Similarity=0.306  Sum_probs=200.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC----CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN----SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|...+.||+|+||.||+|...    .+..||||++....         .....+.+.+|+.++++++||||+++++++
T Consensus       390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~  460 (656)
T 2j0j_A          390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT---------SDSVREKFLQEALTMRQFDHPHIVKLIGVI  460 (656)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT---------CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC---------CHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            56888899999999999999764    24579999874322         123456789999999999999999999998


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+ ...++||||+++|+|.+++......+++..+..++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||
T Consensus       461 ~~-~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~DFG  536 (656)
T 2j0j_A          461 TE-NPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG  536 (656)
T ss_dssp             CS-SSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCC
T ss_pred             ec-CceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEEecC
Confidence            54 56899999999999999998776679999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++.....  .........+|+.|+|||.+.+..++.++||||||+++|||++ |..||.+...  .......   ..  
T Consensus       537 ~a~~~~~~--~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~--~~~~~~i---~~--  607 (656)
T 2j0j_A          537 LSRYMEDS--TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVIGRI---EN--  607 (656)
T ss_dssp             CCCSCCC------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHH---HH--
T ss_pred             CCeecCCC--cceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHH---Hc--
Confidence            99876431  1222334567789999999998899999999999999999997 9999975311  1111000   00  


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                           ......+.   .....+.+++.+||+.||++|||+.++++.|+++
T Consensus       608 -----~~~~~~~~---~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i  649 (656)
T 2j0j_A          608 -----GERLPMPP---NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI  649 (656)
T ss_dssp             -----TCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----CCCCCCCc---cccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                 00011112   2234667788899999999999999999999865

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.3e-37  Score=328.22  Aligned_cols=258  Identities=26%  Similarity=0.321  Sum_probs=204.2

Q ss_pred             hHHHHHHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          520 DQREILEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       520 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      .+....++|+..+.||+|+||.||+|... +++.||||++......        ....+.+.+|++++++++||||++++
T Consensus        16 ~~~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~i~~~~   87 (287)
T 2wei_A           16 FQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK--------NKDTSTILREVELLKKLDHPNIMKLF   87 (287)
T ss_dssp             HTHHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBS--------SSCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             HHHHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccc--------hHHHHHHHHHHHHHHhccCCCccEEE
Confidence            45677889999999999999999999665 7899999998543321        12246788999999999999999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC---CCC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN---YQP  675 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~  675 (840)
                      +++.+....++||||+++++|.+++.... .+++.++..++.|++.||+|||+   .+++||||||+||+++.+   +.+
T Consensus        88 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~  163 (287)
T 2wei_A           88 EILEDSSSFYIVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDI  163 (287)
T ss_dssp             EEEECSSEEEEEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCE
T ss_pred             EEEeCCCeEEEEEEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccE
Confidence            99999999999999999999999887654 68999999999999999999999   999999999999999754   469


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|||++.....    ........||+.|+|||.+.+ .++.++||||||+++|+|++|+.||.....  .   .....
T Consensus       164 kL~Dfg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~---~~~~~  233 (287)
T 2wei_A          164 KIIDFGLSTCFQQ----NTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--Y---DILKR  233 (287)
T ss_dssp             EECSTTGGGTBCC----CSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--H---HHHHH
T ss_pred             EEeccCcceeecC----CCccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCH--H---HHHHH
Confidence            9999999986532    222334568999999998765 589999999999999999999999975311  1   11100


Q ss_pred             hhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ......      . ...+........+.+++.+|++.||++|||+.|++++
T Consensus       234 ~~~~~~------~-~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  277 (287)
T 2wei_A          234 VETGKY------A-FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (287)
T ss_dssp             HHHCCC------C-CCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             HHcCCC------C-CCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence            000000      0 0001111223467788889999999999999999985

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-37  Score=337.35  Aligned_cols=258  Identities=25%  Similarity=0.286  Sum_probs=184.5

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEe--
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFS--  602 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~--  602 (840)
                      +|+..+.||+|+||.||+|.. .+|+.||||++....          ....+.+.+|+.++.++. ||||+++++++.  
T Consensus        29 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----------~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~   98 (337)
T 3ll6_A           29 RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNE----------EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIG   98 (337)
T ss_dssp             EEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESS----------HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEEC
T ss_pred             eEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCc----------hHHHHHHHHHHHHHHHhccCCChhhcccccccc
Confidence            678889999999999999975 478999999884332          233567889999999996 999999999983  


Q ss_pred             ------cCccceEEEeecCCCChHHHhhc--CCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCCEEEcCC
Q 003199          603 ------SLYCNLLVYEYMPNGNLWDALHK--GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSP--IIHRDIKSTNILLDVN  672 (840)
Q Consensus       603 ------~~~~~~lV~e~~~~gsL~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~~~  672 (840)
                            .....++||||+. |+|.+++..  ....+++.+++.++.|++.||+|||+   .+  |+||||||+||+++.+
T Consensus        99 ~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~~~ivH~Dikp~NIl~~~~  174 (337)
T 3ll6_A           99 KEESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR---QKPPIIHRDLKVENLLLSNQ  174 (337)
T ss_dssp             TTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCCCCCGGGCEECTT
T ss_pred             ccccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCEEEccCCcccEEECCC
Confidence                  3445789999995 799998865  23469999999999999999999999   78  9999999999999999


Q ss_pred             CCCeeecccchhhhhccCCCC---------cceecccccccccCcccc---ccCCCCccccchhHHHHHHHHHhCCCCCC
Q 003199          673 YQPKVADFGIAKVLQARGGKD---------STTTVIAGTYGYLAPEYA---YSSKATTKCDVYSFGVVLMELITGRKPVE  740 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~---------~~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~slG~il~el~tg~~p~~  740 (840)
                      +.+||+|||+++.........         .......||+.|+|||++   .+..++.++||||||+++|||++|+.||.
T Consensus       175 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~  254 (337)
T 3ll6_A          175 GTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFE  254 (337)
T ss_dssp             SCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred             CCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCc
Confidence            999999999998764321111         111245689999999988   56678999999999999999999999997


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCC
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFE  816 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~  816 (840)
                      .....  ..   .          ............   ...+.+++.+||+.||++|||+.|++++|+++...+..
T Consensus       255 ~~~~~--~~---~----------~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~~  312 (337)
T 3ll6_A          255 DGAKL--RI---V----------NGKYSIPPHDTQ---YTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARNV  312 (337)
T ss_dssp             --------------------------CCCCTTCCS---SGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTTC
T ss_pred             chhHH--Hh---h----------cCcccCCccccc---chHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccCC
Confidence            53110  00   0          000000001111   12356688899999999999999999999877654443

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1.3e-37  Score=346.53  Aligned_cols=197  Identities=25%  Similarity=0.337  Sum_probs=169.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc------CCCCccee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI------RHKNIVKL  597 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l  597 (840)
                      ..+|+..+.||+|+||.||+|.. .+++.||||++...           ......+.+|+++++.+      .|+||+++
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-----------~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~  164 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-----------KRFHRQAAEEIRILEHLRKQDKDNTMNVIHM  164 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-----------HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-----------cchHHHHHHHHHHHHHHhhccccCCcCEEEE
Confidence            45688899999999999999954 56899999998432           12345566777777776      57799999


Q ss_pred             eeEEecCccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC--
Q 003199          598 YCYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ--  674 (840)
Q Consensus       598 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~--  674 (840)
                      ++++......++||||+. ++|.+++.... ..+++..+..++.||+.||+|||+   .+||||||||+|||++.++.  
T Consensus       165 ~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~  240 (429)
T 3kvw_A          165 LENFTFRNHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSG  240 (429)
T ss_dssp             EEEEEETTEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCC
T ss_pred             EeecccCCeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcc
Confidence            999999999999999995 69999887754 358999999999999999999999   89999999999999999887  


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCC
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD  742 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  742 (840)
                      +||+|||+|+....      ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.
T Consensus       241 vkL~DFG~a~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          241 IKVIDFGSSCYEHQ------RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             EEECCCTTCEETTC------CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eEEeecccceecCC------cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            99999999965422      233457899999999999999999999999999999999999999764

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1e-37  Score=335.71  Aligned_cols=271  Identities=23%  Similarity=0.336  Sum_probs=199.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEe--CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc---CCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL--NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI---RHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~  600 (840)
                      ++|+..+.||+|+||.||+|..  .+|+.||||++........        ....+.+|+.+++.+   .||||++++++
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~--------~~~~~~~e~~~l~~l~~~~h~~i~~~~~~   82 (326)
T 1blx_A           11 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG--------MPLSTIREVAVLRHLETFEHPNVVRLFDV   82 (326)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS--------CBCTHHHHHHHHHHHHHTCCTTBCCEEEE
T ss_pred             hceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCccccc--------CCchhhHHHHHHHhhhccCCCCeEeeeee
Confidence            5788899999999999999976  4688999999864432110        012344667666665   89999999999


Q ss_pred             Ee-----cCccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          601 FS-----SLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       601 ~~-----~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      +.     .....++||||++ |+|.+++.... ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~~~~  158 (326)
T 1blx_A           83 CTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQ  158 (326)
T ss_dssp             EEEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCC
T ss_pred             eeecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcCCCC
Confidence            87     5667899999997 69999998653 358999999999999999999999   99999999999999999999


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      +||+|||+++....    ........||+.|+|||++.+..++.++||||||+++|||++|+.||.....  ........
T Consensus       159 ~kl~Dfg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~i~  232 (326)
T 1blx_A          159 IKLADFGLARIYSF----QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD--VDQLGKIL  232 (326)
T ss_dssp             EEECSCCSCCCCCG----GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHH
T ss_pred             EEEecCcccccccC----CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHH
Confidence            99999999976532    2233456789999999999998999999999999999999999999975321  11000000


Q ss_pred             hhh--ccccchh-------hhcc----cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcCCCC
Q 003199          755 IKV--DTKEGIM-------EVLD----KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEADPCR  814 (840)
Q Consensus       755 ~~~--~~~~~~~-------~~~~----~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~~~~  814 (840)
                      ...  .......       ....    .............+.+++.+|++.||++|||+.|++++  +.++..+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  307 (326)
T 1blx_A          233 DVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERCK  307 (326)
T ss_dssp             HHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCCC
T ss_pred             HHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCccccccchhh
Confidence            000  0000000       0000    00000111233456778889999999999999999976  45555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2e-36  Score=338.60  Aligned_cols=364  Identities=24%  Similarity=0.329  Sum_probs=266.2

Q ss_pred             ccccccccCCC-CCCCCCC-------------CEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCccccccc
Q 003199            2 SFMYLTGTLPD-FSPMQNL-------------RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRL   67 (840)
Q Consensus         2 ~~~~~~~~~~~-~~~l~~L-------------~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l   67 (840)
                      +.|.++|.+|. ++.+++|             ++|++++|.++ .+|..   .++|++|++++|   .+..+|.    .+
T Consensus        42 ~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~---~~~L~~L~l~~n---~l~~lp~----~~  110 (454)
T 1jl5_A           42 AWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL---PPHLESLVASCN---SLTELPE----LP  110 (454)
T ss_dssp             HHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC---CTTCSEEECCSS---CCSSCCC----CC
T ss_pred             cCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC---cCCCCEEEccCC---cCCcccc----cc
Confidence            45677888887 8888764             99999999999 45552   479999999999   5556664    24


Q ss_pred             ccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeee
Q 003199           68 TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLD  147 (840)
Q Consensus        68 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~  147 (840)
                      ++|+.|++++|.+++. |..   .++|++|+|++|++++ +| .|..+++|++|++++|+ +. .+|..+   .+|++|+
T Consensus       111 ~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~-l~-~lp~~~---~~L~~L~  179 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS-LK-KLPDLP---PSLEFIA  179 (454)
T ss_dssp             TTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC-CS-CCCCCC---TTCCEEE
T ss_pred             CCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc-Cc-ccCCCc---ccccEEE
Confidence            8999999999999853 321   2699999999999995 77 69999999999999998 33 466543   5899999


Q ss_pred             ccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccc
Q 003199          148 MSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG  227 (840)
Q Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  227 (840)
                      +++|++++ +| .+..+++|++|++++|++++. |..   .++|++|++++|+++ .+| .+..+++|++|++++|++++
T Consensus       180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence            99999996 56 699999999999999999864 332   369999999999999 566 48999999999999999986


Q ss_pred             cCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCC
Q 003199          228 PLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGN  307 (840)
Q Consensus       228 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  307 (840)
                       +|..   ..+|+.|++++|.+.+ +|..   +++|++|++++|++++ +|..   .++|+.|++++|++++..     .
T Consensus       252 -l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i~-----~  314 (454)
T 1jl5_A          252 -LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSLC-----D  314 (454)
T ss_dssp             -CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEEC-----C
T ss_pred             -cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCccc-----C
Confidence             3432   4789999999999987 4443   3799999999999985 3321   268999999999998632     2


Q ss_pred             C-CCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCC--Ccchhcccc----
Q 003199          308 A-RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNS--SIPNSLSSL----  380 (840)
Q Consensus       308 l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l----  380 (840)
                      + ++|+.|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|+.|+|++|++++  .+|.++..+    
T Consensus       315 ~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~  386 (454)
T 1jl5_A          315 LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNS  386 (454)
T ss_dssp             CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC
T ss_pred             CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcc
Confidence            3 589999999999996 5554   579999999999999 4666   47899999999999998  788898888    


Q ss_pred             ---------cCCCEEECcCccccc--cCCchhhccCCCeEEccCCCCcCcCCcccc
Q 003199          381 ---------KSLNVLDLSNNLLTG--YIPESLCELLPNSINFSNNRLSGPIPLSLI  425 (840)
Q Consensus       381 ---------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~l~l~~N~l~~~~p~~~~  425 (840)
                               ++|+.||+++|++++  .+|.++     ..|.+.+|.+.+++|....
T Consensus       387 ~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl-----~~L~~~~~~~~~~~~~~~~  437 (454)
T 1jl5_A          387 HLAEVPELPQNLKQLHVETNPLREFPDIPESV-----EDLRMNSERVVDPYEFAHE  437 (454)
T ss_dssp             --------------------------------------------------------
T ss_pred             cccccccccCcCCEEECCCCcCCccccchhhH-----hheeCcCcccCCccccCHH
Confidence                     899999999999998  788765     4567788888888775433

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=4e-38  Score=346.90  Aligned_cols=259  Identities=27%  Similarity=0.377  Sum_probs=190.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      .+|+..+.||+|+||+||+|....+..||+|++......              ..+|+++++.++||||+++++++....
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~--------------~~~E~~il~~l~h~niv~l~~~~~~~~  105 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF--------------KNRELQIMRIVKHPNVVDLKAFFYSNG  105 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS--------------CCHHHHHHHTCCCTTBCCEEEEEEEES
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch--------------HHHHHHHHHhCCCCCcceEEEEEEecC
Confidence            357888999999999999998877777999988543211              126999999999999999999985433


Q ss_pred             ------cceEEEeecCCCChHHHhh--cCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc-CCCCCe
Q 003199          606 ------CNLLVYEYMPNGNLWDALH--KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD-VNYQPK  676 (840)
Q Consensus       606 ------~~~lV~e~~~~gsL~~~l~--~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~k  676 (840)
                            ..++||||++++.+.....  .....+++..+..++.|++.||+|||+   ++|+||||||+||+++ .++.+|
T Consensus       106 ~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~k  182 (394)
T 4e7w_A          106 DKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLK  182 (394)
T ss_dssp             SSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEE
T ss_pred             CCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEcCCCCcEE
Confidence                  3689999997654433322  223478999999999999999999999   9999999999999999 789999


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      |+|||+|+....    ........||+.|+|||++.+. .++.++||||+||++|||++|+.||.+.... .......+.
T Consensus       183 L~DFG~a~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~l~~i~~~  257 (394)
T 4e7w_A          183 LIDFGSAKILIA----GEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI-DQLVEIIKV  257 (394)
T ss_dssp             ECCCTTCEECCT----TCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHH
T ss_pred             EeeCCCcccccC----CCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHH
Confidence            999999987632    2223456789999999998765 5899999999999999999999999764211 111111110


Q ss_pred             hh-ccccchhh----hcccc---cC-CCcH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          756 KV-DTKEGIME----VLDKK---LS-GSFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       756 ~~-~~~~~~~~----~~~~~---~~-~~~~-----~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .. ...+.+..    .....   .. ..+.     ....++.+++.+|++.||++|||+.|+++|
T Consensus       258 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (394)
T 4e7w_A          258 LGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH  322 (394)
T ss_dssp             HCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             hCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence            00 00000000    00000   00 1111     123567888999999999999999999987

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.9e-37  Score=343.45  Aligned_cols=260  Identities=27%  Similarity=0.261  Sum_probs=198.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC--------CCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR--------HKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~  596 (840)
                      .+|...+.||+|+||+||+|.. .+++.||||++...           ....+.+.+|+++++.++        |+||++
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----------~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~  105 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-----------EHYTETALDEIRLLKSVRNSDPNDPNREMVVQ  105 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-----------HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCC
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-----------CcchHHHHHHHHHHHHHhhcCCCCCCcceeee
Confidence            5788999999999999999954 57899999998422           233567889999999986        788999


Q ss_pred             eeeEEe----cCccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCCEEEc
Q 003199          597 LYCYFS----SLYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLS-PIIHRDIKSTNILLD  670 (840)
Q Consensus       597 l~~~~~----~~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~  670 (840)
                      +++++.    .....++||||+ ++++.+.+... ...+++..+..++.||+.||+|||+   + +||||||||+|||++
T Consensus       106 ~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIll~  181 (397)
T 1wak_A          106 LLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENILLS  181 (397)
T ss_dssp             EEEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEEEC
T ss_pred             eecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHeeEe
Confidence            999987    566789999999 66666666544 3569999999999999999999999   8 999999999999999


Q ss_pred             CCC-------------------------------------------------CCeeecccchhhhhccCCCCcceecccc
Q 003199          671 VNY-------------------------------------------------QPKVADFGIAKVLQARGGKDSTTTVIAG  701 (840)
Q Consensus       671 ~~~-------------------------------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~g  701 (840)
                      .++                                                 .+||+|||+++....      ......|
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~------~~~~~~g  255 (397)
T 1wak_A          182 VNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK------HFTEDIQ  255 (397)
T ss_dssp             CCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB------CSCSCCS
T ss_pred             ccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc------cCccCCC
Confidence            775                                                 799999999976533      2334578


Q ss_pred             cccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc-hhhhhhhhhc--cc--c-------chhhhccc
Q 003199          702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN-IIYWVSIKVD--TK--E-------GIMEVLDK  769 (840)
Q Consensus       702 t~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~-~~~~~~~~~~--~~--~-------~~~~~~~~  769 (840)
                      |+.|+|||++.+..++.++|||||||++|||++|+.||......... ..........  ..  .       ........
T Consensus       256 t~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  335 (397)
T 1wak_A          256 TRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTK  335 (397)
T ss_dssp             CGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCT
T ss_pred             CCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCC
Confidence            99999999999999999999999999999999999999764332211 0000000000  00  0       00000000


Q ss_pred             --------------------ccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          770 --------------------KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       770 --------------------~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                                          .......+....+.+++.+||+.||++|||++|++++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  392 (397)
T 1wak_A          336 KGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH  392 (397)
T ss_dssp             TSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred             ccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence                                0001124556778899999999999999999999976

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.8e-38  Score=345.71  Aligned_cols=259  Identities=24%  Similarity=0.322  Sum_probs=191.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..+|...+.||+|+||+||+|.. .+|+.||||++......              ..+|+++++.++||||+++++++..
T Consensus         6 ~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~--------------~~~E~~il~~l~hpnIv~l~~~~~~   71 (383)
T 3eb0_A            6 SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY--------------KNRELDIMKVLDHVNIIKLVDYFYT   71 (383)
T ss_dssp             CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS--------------CCHHHHHHTTCCCTTBCCEEEEEEE
T ss_pred             cceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch--------------HHHHHHHHHHcCCCCccchhheeee
Confidence            35788899999999999999954 68999999998543211              2369999999999999999999843


Q ss_pred             --------------------------------------CccceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHH
Q 003199          604 --------------------------------------LYCNLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGV  642 (840)
Q Consensus       604 --------------------------------------~~~~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i  642 (840)
                                                            ....++||||++ |+|.+.+..   ....+++..+..++.|+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi  150 (383)
T 3eb0_A           72 TGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQL  150 (383)
T ss_dssp             C-------------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             cCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence                                                  234789999997 587776653   23479999999999999


Q ss_pred             HHHHHHHhhcCCCCeEecCCCCCCEEEc-CCCCCeeecccchhhhhccCCCCcceecccccccccCccccccC-CCCccc
Q 003199          643 AQGLAYLHHGLLSPIIHRDIKSTNILLD-VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKC  720 (840)
Q Consensus       643 ~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~  720 (840)
                      +.||+|||+   .+|+||||||+||+++ .++.+||+|||+|+....    ........||+.|+|||.+.+. .++.++
T Consensus       151 ~~aL~~LH~---~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~  223 (383)
T 3eb0_A          151 FRAVGFIHS---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIP----SEPSVAYICSRFYRAPELMLGATEYTPSI  223 (383)
T ss_dssp             HHHHHHHHT---TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCT----TSCCCCCCCCSSCCCHHHHTTCSSCCTHH
T ss_pred             HHHHHHHHH---CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCC----CCCCcCcccCCCccCHHHhcCCCCCCcch
Confidence            999999999   9999999999999998 688999999999986533    2233455789999999988765 489999


Q ss_pred             cchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh-ccccchh-------hhccccc-CCCcH-----HHHHHHHHHH
Q 003199          721 DVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV-DTKEGIM-------EVLDKKL-SGSFR-----DEMIQVLRIA  786 (840)
Q Consensus       721 Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~-~~~~~-----~~~~~l~~l~  786 (840)
                      ||||+||++|||++|+.||.+.... ........... ...+.+.       ...-+.. ...+.     .....+.+++
T Consensus       224 DiwslG~il~ell~g~~pf~~~~~~-~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  302 (383)
T 3eb0_A          224 DLWSIGCVFGELILGKPLFSGETSI-DQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLL  302 (383)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHH
T ss_pred             hhhhHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHH
Confidence            9999999999999999999763211 11111110000 0000000       0000000 01111     1234577888


Q ss_pred             HHccCCCCCCCCCHHHHHHH
Q 003199          787 IRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       787 ~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+|++.||++|||+.|++++
T Consensus       303 ~~~L~~dP~~R~t~~e~l~h  322 (383)
T 3eb0_A          303 EQILRYEPDLRINPYEAMAH  322 (383)
T ss_dssp             HHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHccCChhhCCCHHHHhcC
Confidence            89999999999999999976

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=3.3e-37  Score=337.28  Aligned_cols=261  Identities=22%  Similarity=0.291  Sum_probs=196.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|...+.||+|+||.||+|.. .+|+.||||++.....        .....+.+.+|+.+++.++||||+++++++..
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~  112 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ--------SEIFAKRAYRELLLLKHMQHENVIGLLDVFTP  112 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS--------SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECS
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc--------chhHHHHHHHHHHHHHhcCCCCchhhhhheec
Confidence            45788889999999999999954 5799999999854321        13345778899999999999999999999987


Q ss_pred             Cccc------eEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 LYCN------LLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 ~~~~------~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                      ....      ++||||++ ++|.+.+..   .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||
T Consensus       113 ~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL  185 (371)
T 4exu_A          113 ASSLRNFYDFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKI  185 (371)
T ss_dssp             CSSSTTCCCCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEE
T ss_pred             cCCcccceeEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCCCEEE
Confidence            6655      99999996 688888754   58999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      +|||+++....      ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ..........
T Consensus       186 ~Dfg~a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~  258 (371)
T 4exu_A          186 LDFGLARHADA------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL-DQLTQILKVT  258 (371)
T ss_dssp             CSTTCC--------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHH
T ss_pred             EecCccccccc------CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHh
Confidence            99999976532      2334578999999999877 67899999999999999999999999753210 0000000000


Q ss_pred             hccccc------------hhhhcccccCCCcH----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          757 VDTKEG------------IMEVLDKKLSGSFR----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       757 ~~~~~~------------~~~~~~~~~~~~~~----~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ......            ............+.    .....+.+++.+|++.||++|||+.|++++=
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  325 (371)
T 4exu_A          259 GVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHP  325 (371)
T ss_dssp             CCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSG
T ss_pred             CCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCc
Confidence            000000            00000011111111    2245678889999999999999999999874

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=338.40  Aligned_cols=262  Identities=23%  Similarity=0.334  Sum_probs=196.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||.||+|...+  .||||++.......        ...+.+.+|+.++++++||||+++++++.+..
T Consensus        33 ~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~--------~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  102 (319)
T 2y4i_B           33 EQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNE--------DQLKAFKREVMAYRQTRHENVVLFMGACMSPP  102 (319)
T ss_dssp             SCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCC--------CCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS
T ss_pred             HHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCH--------HHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC
Confidence            467788999999999999998763  49999986543211        11234667999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++++|.+++......+++..+..++.|++.||+|||+   ++|+||||||+||+++ ++.+||+|||+++.
T Consensus       103 ~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~  178 (319)
T 2y4i_B          103 HLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGLFSI  178 (319)
T ss_dssp             CEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---CCEECCCSCCC-
T ss_pred             ceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCCEEEeecCCccc
Confidence            9999999999999999998876679999999999999999999999   9999999999999998 67999999999876


Q ss_pred             hhccC--CCCcceecccccccccCcccccc---------CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          686 LQARG--GKDSTTTVIAGTYGYLAPEYAYS---------SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       686 ~~~~~--~~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      .....  ..........||+.|+|||.+.+         ..++.++||||||+++|||++|+.||....   .....+. 
T Consensus       179 ~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~---~~~~~~~-  254 (319)
T 2y4i_B          179 SGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP---AEAIIWQ-  254 (319)
T ss_dssp             ---------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC---HHHHHHH-
T ss_pred             cccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC---HHHHHHH-
Confidence            53211  11223344568999999998864         457899999999999999999999997531   1111110 


Q ss_pred             hhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCC
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRF  815 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~  815 (840)
                        ..      .........  ......+.+++.+||+.||++|||+.++++.|+++.....
T Consensus       255 --~~------~~~~~~~~~--~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~  305 (319)
T 2y4i_B          255 --MG------TGMKPNLSQ--IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNR  305 (319)
T ss_dssp             --HH------TTCCCCCCC--SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-----
T ss_pred             --hc------cCCCCCCCc--CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhc
Confidence              00      000011100  0122346678889999999999999999999998876543

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=7.5e-38  Score=347.63  Aligned_cols=258  Identities=28%  Similarity=0.400  Sum_probs=189.4

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC-
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL-  604 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-  604 (840)
                      .|+..+.||+|+||.||+|... +|+.||||++.....              ...+|+++++.++||||+++++++... 
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~--------------~~~~E~~il~~l~hpniv~l~~~~~~~~  120 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR--------------FKNRELQIMRKLDHCNIVRLRYFFYSSG  120 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT--------------SCCHHHHHHHTCCCTTBCCEEEEEEEEE
T ss_pred             eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch--------------hHHHHHHHHHHcCCCCccceeeEEeccC
Confidence            5778889999999999999765 699999999854321              123699999999999999999988432 


Q ss_pred             -----ccceEEEeecCCCChHHHhh---cCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC-CCC
Q 003199          605 -----YCNLLVYEYMPNGNLWDALH---KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQP  675 (840)
Q Consensus       605 -----~~~~lV~e~~~~gsL~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~  675 (840)
                           ...++||||+++ ++.+.+.   .....+++..+..++.||++||+|||+   ++|+||||||+|||++.+ +.+
T Consensus       121 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NILl~~~~~~~  196 (420)
T 1j1b_A          121 EKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVL  196 (420)
T ss_dssp             TTTTEEEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEEETTTTEE
T ss_pred             CCCcceeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEeCCCCeE
Confidence                 235789999975 6666554   234579999999999999999999999   999999999999999965 568


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      ||+|||+++.+..    ........||+.|+|||++.+. .++.++|||||||++|||++|+.||.+... ...+.....
T Consensus       197 kl~DFG~a~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~-~~~l~~i~~  271 (420)
T 1j1b_A          197 KLCDFGSAKQLVR----GEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIK  271 (420)
T ss_dssp             EECCCTTCEECCT----TCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHH
T ss_pred             Eeccchhhhhccc----CCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHH
Confidence            9999999986532    1223345789999999998765 789999999999999999999999976321 111111111


Q ss_pred             hhh-ccccchhh-------hcccccCC-CcH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          755 IKV-DTKEGIME-------VLDKKLSG-SFR-----DEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       755 ~~~-~~~~~~~~-------~~~~~~~~-~~~-----~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ... ...+.+..       ..-+.+.. .+.     ....++.+++.+|++.||++||++.|+++|-
T Consensus       272 ~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp  338 (420)
T 1j1b_A          272 VLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHS  338 (420)
T ss_dssp             HHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             HhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCH
Confidence            000 00000000       00000100 011     1235678888999999999999999999873

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=6.4e-38  Score=336.38  Aligned_cols=264  Identities=22%  Similarity=0.340  Sum_probs=190.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe--
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS--  602 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--  602 (840)
                      .+|...+.||+|+||.||+|... +|+.||||++....          ....+.+.+|++++++++||||+++++++.  
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   80 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD----------PQSVKHALREIKIIRRLDHDNIVKVFEILGPS   80 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCS----------HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTT
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC----------hHHHHHHHHHHHHHHhcCCCCeeEEEEecccc
Confidence            56888899999999999999665 58999999884322          234567889999999999999999998874  


Q ss_pred             ------------cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc
Q 003199          603 ------------SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD  670 (840)
Q Consensus       603 ------------~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~  670 (840)
                                  +....++||||++ |+|.+++...  .+++..+..++.|++.||+|||+   ++|+||||||+||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~  154 (320)
T 2i6l_A           81 GSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANLFIN  154 (320)
T ss_dssp             SCBCCC----CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEE
T ss_pred             ccccccccccccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEc
Confidence                        3456789999997 6999999764  58999999999999999999999   9999999999999997


Q ss_pred             -CCCCCeeecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcc
Q 003199          671 -VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKN  748 (840)
Q Consensus       671 -~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  748 (840)
                       +++.+||+|||+++................+|+.|+|||.+.+ ..++.++||||||+++|||++|+.||...... ..
T Consensus       155 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-~~  233 (320)
T 2i6l_A          155 TEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL-EQ  233 (320)
T ss_dssp             TTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HH
T ss_pred             CCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH-HH
Confidence             5678999999999876432222223345567999999998765 67899999999999999999999999753210 00


Q ss_pred             hhhhhhhh-hccccchhh-------hccccc--C-CC----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          749 IIYWVSIK-VDTKEGIME-------VLDKKL--S-GS----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       749 ~~~~~~~~-~~~~~~~~~-------~~~~~~--~-~~----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ........ ........+       ......  . ..    .......+.+++.+|++.||++|||+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          234 MQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             HHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            00000000 000000000       000000  0 00    01124567788889999999999999999986

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=4.5e-37  Score=327.01  Aligned_cols=255  Identities=24%  Similarity=0.359  Sum_probs=192.6

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ..++|+..+.||+|+||.||+|.. .+|+.||||++...           ....+.+.+|+.++++++||||+++++++.
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----------~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~   72 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-----------EEKLSTILSEVMLLASLNHQYVVRYYAAWL   72 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-----------HHHHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-----------HHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            457899999999999999999965 47999999998421           233567889999999999999999999875


Q ss_pred             c-------------CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE
Q 003199          603 S-------------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL  669 (840)
Q Consensus       603 ~-------------~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill  669 (840)
                      +             ....++||||+++|+|.+++......+++..++.++.|++.||+|||+   ++|+||||||+||++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~  149 (303)
T 1zy4_A           73 ERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFI  149 (303)
T ss_dssp             ECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEE
T ss_pred             hhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEE
Confidence            4             456789999999999999998766678899999999999999999999   999999999999999


Q ss_pred             cCCCCCeeecccchhhhhccCC-----------CCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCC
Q 003199          670 DVNYQPKVADFGIAKVLQARGG-----------KDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRK  737 (840)
Q Consensus       670 ~~~~~~kl~Dfg~a~~~~~~~~-----------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~  737 (840)
                      +.++.+||+|||+++.......           .........||+.|+|||.+.+. .++.++||||||+++|||++   
T Consensus       150 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---  226 (303)
T 1zy4_A          150 DESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---  226 (303)
T ss_dssp             CTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---
T ss_pred             cCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---
Confidence            9999999999999976542110           01223456789999999998764 68999999999999999998   


Q ss_pred             CCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          738 PVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       738 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ||...    ............        .....+..+ ......+.+++.+|++.||.+|||+.+++++-
T Consensus       227 p~~~~----~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~  285 (303)
T 1zy4_A          227 PFSTG----MERVNILKKLRS--------VSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSG  285 (303)
T ss_dssp             CCSSH----HHHHHHHHHHHS--------TTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHSS
T ss_pred             ccCCc----hhHHHHHHhccc--------cccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCCC
Confidence            55321    000011100000        001111111 22334567788899999999999999999863

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=333.28  Aligned_cols=251  Identities=25%  Similarity=0.347  Sum_probs=191.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEe
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFS  602 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  602 (840)
                      ..+|+..+.||+|+||.||+|.. .+|+.||||++.....           ..+.+.+|+.+++++ +||||+++++++.
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----------~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   91 (326)
T 2x7f_A           23 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-----------EEEEIKQEINMLKKYSHHRNIATYYGAFI   91 (326)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-----------TTHHHHHHHHHHHHHCCSTTBCCEEEEEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-----------cHHHHHHHHHHHHhccCCCCeeeeeeEEe
Confidence            45688889999999999999966 4789999999853321           135678899999999 7999999999997


Q ss_pred             c------CccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          603 S------LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       603 ~------~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      .      ....++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+
T Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~  168 (326)
T 2x7f_A           92 KKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEV  168 (326)
T ss_dssp             ECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCE
T ss_pred             eccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCCCCE
Confidence            6      457899999999999999998642 468999999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII  750 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~  750 (840)
                      ||+|||++......   ........||+.|+|||++.     +..++.++||||||+++|||++|+.||.....   ...
T Consensus       169 kl~Dfg~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~  242 (326)
T 2x7f_A          169 KLVDFGVSAQLDRT---VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP---MRA  242 (326)
T ss_dssp             EECCCTTTC----------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCH---HHH
T ss_pred             EEeeCcCceecCcC---ccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcH---HHH
Confidence            99999999765431   12233457899999999986     56789999999999999999999999965311   000


Q ss_pred             hhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .+ .....       .........+   ...+.+++.+||..||++||++.+++++
T Consensus       243 ~~-~~~~~-------~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~h  287 (326)
T 2x7f_A          243 LF-LIPRN-------PAPRLKSKKW---SKKFQSFIESCLVKNHSQRPATEQLMKH  287 (326)
T ss_dssp             HH-HHHHS-------CCCCCSCSCS---CHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HH-HhhcC-------ccccCCcccc---CHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            00 00000       0000011122   2456678889999999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.3e-36  Score=333.57  Aligned_cols=310  Identities=22%  Similarity=0.242  Sum_probs=191.0

Q ss_pred             CCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCC
Q 003199           39 NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNL  118 (840)
Q Consensus        39 ~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L  118 (840)
                      .+++|+.|++++|   .+..+|...|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..|..+++|
T Consensus        43 ~l~~l~~l~l~~~---~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLNNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGCCCSEEEEESC---EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCceEEEecCC---chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            3566777777777   5666666666777777777777777776666667777777777777777776666666777777


Q ss_pred             CeeecccCccccccCCc-ccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEcc
Q 003199          119 RQLELYYNQQLAGTIPE-ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLY  197 (840)
Q Consensus       119 ~~L~L~~n~~~~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  197 (840)
                      ++|+|++|+ +. .+|. .|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..   +..+++|++|+++
T Consensus       120 ~~L~L~~n~-l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~  194 (390)
T 3o6n_A          120 TVLVLERND-LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS  194 (390)
T ss_dssp             CEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECC
T ss_pred             CEEECCCCc-cC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecc
Confidence            777777665 22 3343 3466666777777777666655666666666666666666666442   4455666666666


Q ss_pred             CCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccC
Q 003199          198 DNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSI  277 (840)
Q Consensus       198 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  277 (840)
                      +|.+++.     ...++|+.|++++|.++..                         +..  ..++|+.|++++|.+++. 
T Consensus       195 ~n~l~~~-----~~~~~L~~L~l~~n~l~~~-------------------------~~~--~~~~L~~L~l~~n~l~~~-  241 (390)
T 3o6n_A          195 YNLLSTL-----AIPIAVEELDASHNSINVV-------------------------RGP--VNVELTILKLQHNNLTDT-  241 (390)
T ss_dssp             SSCCSEE-----ECCSSCSEEECCSSCCCEE-------------------------ECC--CCSSCCEEECCSSCCCCC-
T ss_pred             ccccccc-----CCCCcceEEECCCCeeeec-------------------------ccc--ccccccEEECCCCCCccc-
Confidence            6666532     1223566666666655421                         111  124566666666666532 


Q ss_pred             CccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCcc
Q 003199          278 PEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLK  357 (840)
Q Consensus       278 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  357 (840)
                       ..+..+++|+.|++++|.+++..+..|..+++|++|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..++
T Consensus       242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~  318 (390)
T 3o6n_A          242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD  318 (390)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred             -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccC
Confidence             355666666666666666666666666666666666666666663 3444455666666666666665 3444555566


Q ss_pred             ccchhcccCCccCCCcchhcccccCCCEEECcCccccc
Q 003199          358 KLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG  395 (840)
Q Consensus       358 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  395 (840)
                      +|+.|+|++|++++. +  +..+++|+.|+|++|++++
T Consensus       319 ~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          319 RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             cCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            666666666666533 2  4555666666666666654

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=2.6e-37  Score=330.33  Aligned_cols=255  Identities=22%  Similarity=0.313  Sum_probs=194.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC--CCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR--HKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~  603 (840)
                      +.|...+.||+|+||.||+|...+++.||||++.....        .....+.+.+|++++++++  |+||+++++++..
T Consensus        28 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~   99 (313)
T 3cek_A           28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--------DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT   99 (313)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSC--------CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC
T ss_pred             ceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccc--------cccchHHHHHHHHHHHhccccCCceEEEEEEeec
Confidence            45888899999999999999888899999999854331        1334577899999999997  5999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....++||| +.+++|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||++++ +.+||+|||++
T Consensus       100 ~~~~~lv~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~  173 (313)
T 3cek_A          100 DQYIYMVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD-GMLKLIDFGIA  173 (313)
T ss_dssp             SSEEEEEEC-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET-TEEEECCCSSS
T ss_pred             CCEEEEEEe-cCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEEEC-CeEEEeecccc
Confidence            999999999 56889999998764 68999999999999999999999   99999999999999965 78999999999


Q ss_pred             hhhhccCCCCcceecccccccccCcccccc-----------CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhh
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYS-----------SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW  752 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~  752 (840)
                      +...... .........||+.|+|||.+.+           ..++.++||||||+++|||++|+.||......   ... 
T Consensus       174 ~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~---~~~-  248 (313)
T 3cek_A          174 NQMQPDT-TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ---ISK-  248 (313)
T ss_dssp             CC---------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH---HHH-
T ss_pred             ccccCcc-ccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHH---HHH-
Confidence            8764321 1122334578999999999865           46888999999999999999999999753211   100 


Q ss_pred             hhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      .......      ..........   ...+.+++.+||+.||++||++.|++++-.
T Consensus       249 ~~~~~~~------~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~h~~  295 (313)
T 3cek_A          249 LHAIIDP------NHEIEFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLAHPY  295 (313)
T ss_dssp             HHHHHCT------TSCCCCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred             HHHHHhc------ccccCCcccc---hHHHHHHHHHHccCCcccCcCHHHHhcCcc
Confidence            0000000      0001111122   245677888999999999999999998753

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=344.89  Aligned_cols=250  Identities=22%  Similarity=0.333  Sum_probs=186.2

Q ss_pred             hcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLY  605 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~  605 (840)
                      .|...+.||+|+||+||.....+|+.||||++.....             ..+.+|+++++++ +||||+++++++.+..
T Consensus        25 ~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-------------~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~   91 (432)
T 3p23_A           25 SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-------------SFADREVQLLRESDEHPNVIRYFCTEKDRQ   91 (432)
T ss_dssp             EEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-------------EECHHHHHHHHHSCCCTTBCCEEEEEEETT
T ss_pred             EEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-------------HHHHHHHHHHHhccCCCCcCeEEEEEecCC
Confidence            4677789999999997766666799999999854321             1245799999999 7999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---C--CCCeeecc
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---N--YQPKVADF  680 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~--~~~kl~Df  680 (840)
                      ..++||||++ |+|.+++........+.++..++.||+.||+|||+   .+|+||||||+||+++.   +  ..+||+||
T Consensus        92 ~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~DF  167 (432)
T 3p23_A           92 FQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDF  167 (432)
T ss_dssp             EEEEEEECCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECCT
T ss_pred             EEEEEEECCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEecc
Confidence            9999999995 69999998876567777888999999999999999   99999999999999953   2  35779999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccc---cCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhh
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAY---SSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |+|+................||+.|+|||++.   ...++.++|||||||++|||++ |..||.....   ....   ..
T Consensus       168 G~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~---~~~~---~~  241 (432)
T 3p23_A          168 GLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ---RQAN---IL  241 (432)
T ss_dssp             TEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT---HHHH---HH
T ss_pred             cceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH---HHHH---HH
Confidence            99987643222223344567999999999987   4567889999999999999999 9999864311   0000   00


Q ss_pred             hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...       ...............+.+++.+|++.||++|||+.|++++
T Consensus       242 ~~~-------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h  284 (432)
T 3p23_A          242 LGA-------CSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKH  284 (432)
T ss_dssp             TTC-------CCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hcc-------CCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence            000       0000001112234456788889999999999999999965

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=2.4e-37  Score=337.71  Aligned_cols=268  Identities=23%  Similarity=0.286  Sum_probs=186.1

Q ss_pred             hHHHHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          520 DQREILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       520 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      ......++|...+.||+|+||.||+|.. .+|+.||||++......           .....+|++.++.++||||++++
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~~~~l~~l~h~niv~~~   85 (360)
T 3e3p_A           17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF-----------RNRELQIMQDLAVLHHPNIVQLQ   85 (360)
T ss_dssp             HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC-----------CCHHHHHHHHHHHHCCTTBCCEE
T ss_pred             hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc-----------cHHHHHHHHHHHhcCCCCcccHH
Confidence            3456678999999999999999999966 47899999988443211           12345677888888999999999


Q ss_pred             eEEecCcc-------ceEEEeecCCCChHHHhhc---CCCCCChHHHHHHHHHHHHHHHHHh--hcCCCCeEecCCCCCC
Q 003199          599 CYFSSLYC-------NLLVYEYMPNGNLWDALHK---GLVHLDWPTRHKIAFGVAQGLAYLH--HGLLSPIIHRDIKSTN  666 (840)
Q Consensus       599 ~~~~~~~~-------~~lV~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH--~~~~~~ivH~Dlk~~N  666 (840)
                      +++.....       .++||||+++ ++.+.+..   ....+++..+..++.|++.||.|||  +   ++|+||||||+|
T Consensus        86 ~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---~~ivH~Dlkp~N  161 (360)
T 3e3p_A           86 SYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPS---VNVCHRDIKPHN  161 (360)
T ss_dssp             EEEEEECSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTT---TCCBCSCCCGGG
T ss_pred             HhhhccccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCC---CCeecCcCCHHH
Confidence            99865433       6899999976 55443332   3347899999999999999999999  7   999999999999


Q ss_pred             EEEcC-CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCC-CCccccchhHHHHHHHHHhCCCCCCCCCC
Q 003199          667 ILLDV-NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGRKPVEDDFG  744 (840)
Q Consensus       667 ill~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~tg~~p~~~~~~  744 (840)
                      |+++. ++.+||+|||+++....    ........||+.|+|||++.+.. ++.++|||||||++|||++|+.||.....
T Consensus       162 Ill~~~~~~~kl~Dfg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~  237 (360)
T 3e3p_A          162 VLVNEADGTLKLCDFGSAKKLSP----SEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNS  237 (360)
T ss_dssp             EEEETTTTEEEECCCTTCBCCCT----TSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             EEEeCCCCcEEEeeCCCceecCC----CCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCCh
Confidence            99997 89999999999986643    22334557899999999986654 89999999999999999999999976321


Q ss_pred             CCcchhhhhhhhhccccchhhhcc-----------------cccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          745 DNKNIIYWVSIKVDTKEGIMEVLD-----------------KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      . .....................+                 .............+.+++.+|++.||++|||+.|++++-
T Consensus       238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp  316 (360)
T 3e3p_A          238 A-GQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHP  316 (360)
T ss_dssp             H-HHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSG
T ss_pred             H-HHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCc
Confidence            1 1111111100000000000000                 000111111346788899999999999999999999873

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=3.8e-37  Score=334.89  Aligned_cols=260  Identities=22%  Similarity=0.301  Sum_probs=195.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|...+.||+|+||.||+|.. .+|+.||||++.....        .....+.+.+|+.+++.++||||+++++++...
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   95 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ--------SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPA   95 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS--------SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc--------chHHHHHHHHHHHHHHhcCCCCcccHhheEecc
Confidence            4678889999999999999965 5799999999854321        133456788999999999999999999999776


Q ss_pred             cc------ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          605 YC------NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       605 ~~------~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      ..      .++||||++ ++|.+++..   .+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+
T Consensus        96 ~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~  168 (353)
T 3coi_A           96 SSLRNFYDFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKIL  168 (353)
T ss_dssp             SSGGGCCCCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEEEC
T ss_pred             cccccceeEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEEEe
Confidence            54      499999996 688887754   58999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      |||+++....      ......||+.|+|||.+.+ ..++.++||||||+++|||++|+.||.+.... ...........
T Consensus       169 Dfg~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~  241 (353)
T 3coi_A          169 DFGLARHADA------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL-DQLTQILKVTG  241 (353)
T ss_dssp             STTCTTC--------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHH-HHHHHHHHHHC
T ss_pred             ecccccCCCC------CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhC
Confidence            9999976432      2334578999999998877 67899999999999999999999999753210 00000000000


Q ss_pred             ccccc------------hhhhc----ccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTKEG------------IMEVL----DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~~------------~~~~~----~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      .....            .....    ...+..........+.+++.+|++.||++|||+.|++++-
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp  307 (353)
T 3coi_A          242 VPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHP  307 (353)
T ss_dssp             BCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSG
T ss_pred             CCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCc
Confidence            00000            00000    0111111223345677888899999999999999999873

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=8.1e-37  Score=330.67  Aligned_cols=259  Identities=21%  Similarity=0.295  Sum_probs=199.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe--CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCC------ccee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL--NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN------IVKL  597 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l  597 (840)
                      ++|+..+.||+|+||.||+|..  .+|+.||||++...           ....+.+.+|+++++.++|++      ++++
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-----------~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~   82 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-----------DRYCEAARSEIQVLEHLNTTDPNSTFRCVQM   82 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-----------HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-----------CchhHHHHHHHHHHHHhhhcCCCCceeeEee
Confidence            5788899999999999999965  36899999998422           233566788999999887765      9999


Q ss_pred             eeEEecCccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-----
Q 003199          598 YCYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-----  671 (840)
Q Consensus       598 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-----  671 (840)
                      ++++......++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+   ++|+||||||+||+++.     
T Consensus        83 ~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~  158 (339)
T 1z57_A           83 LEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTE  158 (339)
T ss_dssp             EEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCCCEEE
T ss_pred             ecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEecccccc
Confidence            99999999999999999 899999997654 368899999999999999999999   99999999999999987     


Q ss_pred             --------------CCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCC
Q 003199          672 --------------NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRK  737 (840)
Q Consensus       672 --------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~  737 (840)
                                    ++.+||+|||+++....      ......||+.|+|||++.+..++.++|||||||++|||++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~  232 (339)
T 1z57_A          159 AYNPKIKRDERTLINPDIKVVDFGSATYDDE------HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFT  232 (339)
T ss_dssp             EEC----CEEEEESCCCEEECCCSSCEETTS------CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCCccccccccccCCCceEeeCcccccCcc------ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCC
Confidence                          66899999999976432      2234578999999999999899999999999999999999999


Q ss_pred             CCCCCCCCCcchhhhhhhhhccccch---------------------------hhhcc--cccCCCcHHHHHHHHHHHHH
Q 003199          738 PVEDDFGDNKNIIYWVSIKVDTKEGI---------------------------MEVLD--KKLSGSFRDEMIQVLRIAIR  788 (840)
Q Consensus       738 p~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~--~~~~~~~~~~~~~l~~l~~~  788 (840)
                      ||....... ................                           .....  .............+.+++.+
T Consensus       233 pf~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  311 (339)
T 1z57_A          233 VFPTHDSKE-HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQK  311 (339)
T ss_dssp             SCCCSCHHH-HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHH
T ss_pred             CCCCCChHH-HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHH
Confidence            997532110 0000000000000000                           00000  00001112345678899999


Q ss_pred             ccCCCCCCCCCHHHHHHH
Q 003199          789 CTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       789 cl~~dP~~Rps~~evl~~  806 (840)
                      |++.||++|||+.|++++
T Consensus       312 ~L~~dP~~Rpt~~ell~h  329 (339)
T 1z57_A          312 MLEYDPAKRITLREALKH  329 (339)
T ss_dssp             HTCSSTTTSCCHHHHTTS
T ss_pred             HhCcCcccccCHHHHhcC
Confidence            999999999999999876

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=4.7e-37  Score=333.77  Aligned_cols=272  Identities=19%  Similarity=0.248  Sum_probs=203.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccC-------chhhHHHHHHHHHHHHHHhccCCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSAS-------DTDQLQLDKGLKTEVETLGNIRHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~-------~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  598 (840)
                      .+|...+.||+|+||.||+|.. +|+.||||++..........       ........+.+.+|+.++++++||||++++
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            5788899999999999999988 89999999985433211000       000111236789999999999999999999


Q ss_pred             eEEecCccceEEEeecCCCChHHH------hhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDA------LHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV  671 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~------l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~  671 (840)
                      +++.+.+..++||||+++|+|.++      +... ...+++..+..++.|++.||+|||+.  ++|+||||||+||+++.
T Consensus       110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dl~p~Nil~~~  187 (348)
T 2pml_X          110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNE--KNICHRDVKPSNILMDK  187 (348)
T ss_dssp             EEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT--SCEECCCCCGGGEEECT
T ss_pred             EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhcc--CCEeecCCChHhEEEcC
Confidence            999999999999999999999998      6542 35789999999999999999999973  68999999999999999


Q ss_pred             CCCCeeecccchhhhhccCCCCcceecccccccccCccccccC-CCCc-cccchhHHHHHHHHHhCCCCCCCCCCCCcch
Q 003199          672 NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATT-KCDVYSFGVVLMELITGRKPVEDDFGDNKNI  749 (840)
Q Consensus       672 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~slG~il~el~tg~~p~~~~~~~~~~~  749 (840)
                      ++.+||+|||.+.....     .......||+.|+|||.+.+. .++. ++||||||+++|||++|+.||...... ...
T Consensus       188 ~~~~kl~dfg~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~  261 (348)
T 2pml_X          188 NGRVKLSDFGESEYMVD-----KKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL-VEL  261 (348)
T ss_dssp             TSCEEECCCTTCEECBT-----TEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS-HHH
T ss_pred             CCcEEEecccccccccc-----ccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH-HHH
Confidence            99999999999976532     134456799999999999877 5666 999999999999999999999754221 111


Q ss_pred             hhhhhhh-hccccchhhhccccc----CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          750 IYWVSIK-VDTKEGIMEVLDKKL----SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       750 ~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....... ...............    ..........+.+++.+|++.||++|||+.|++++
T Consensus       262 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h  323 (348)
T 2pml_X          262 FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH  323 (348)
T ss_dssp             HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            1110000 000000000000000    00002234567788889999999999999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.4e-36  Score=349.52  Aligned_cols=333  Identities=18%  Similarity=0.160  Sum_probs=156.8

Q ss_pred             CCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCe
Q 003199           41 TNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ  120 (840)
Q Consensus        41 ~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~  120 (840)
                      .+++.|++++|   .+..+|+..|..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.|++..|..|+.+++|++
T Consensus        51 ~~l~~l~l~~~---~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           51 NNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             CCCSEEEESSC---EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCceEEEeeCC---CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            44455555554   444444444444555555555555554444444444555555555555544444444444444444


Q ss_pred             eecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCc
Q 003199          121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNS  200 (840)
Q Consensus       121 L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  200 (840)
                      |+|++|. +....+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++..   +..+++|++|++++|.
T Consensus       128 L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            4444443 22211222344444444444444444444444444444444444444444321   2233444444444444


Q ss_pred             CcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCcc
Q 003199          201 LTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEG  280 (840)
Q Consensus       201 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  280 (840)
                      +++.                                                     ...++|+.|++++|.+... +..
T Consensus       204 l~~l-----------------------------------------------------~~~~~L~~L~ls~n~l~~~-~~~  229 (597)
T 3oja_B          204 LSTL-----------------------------------------------------AIPIAVEELDASHNSINVV-RGP  229 (597)
T ss_dssp             CSEE-----------------------------------------------------ECCTTCSEEECCSSCCCEE-ECS
T ss_pred             cccc-----------------------------------------------------cCCchhheeeccCCccccc-ccc
Confidence            4321                                                     1122344444444444421 111


Q ss_pred             ccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccc
Q 003199          281 ILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN  360 (840)
Q Consensus       281 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  360 (840)
                      +  .++|+.|+|++|.+++.  ..++.+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+
T Consensus       230 ~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~  304 (597)
T 3oja_B          230 V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK  304 (597)
T ss_dssp             C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCC
T ss_pred             c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCc
Confidence            1  13455555555555432  344555555555555555555555555555555555555555553 344444555555


Q ss_pred             hhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhccCCCeEEccCCCCcCcCCcccccCCCcccccCCCCCc
Q 003199          361 LLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLC  440 (840)
Q Consensus       361 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~p~~~~~~~~~~~~~~n~~~c  440 (840)
                      .|+|++|+++ .+|..+..+++|+.|+|++|+|++..+..+.  .++.|++++|+++|.++..+........+.+++..|
T Consensus       305 ~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C  381 (597)
T 3oja_B          305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC  381 (597)
T ss_dssp             EEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTC--CCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCC
T ss_pred             EEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcC--CCCEEEeeCCCCCChhHHHHHHHHhhhccccccccC
Confidence            5555555555 3444455555555555555555533211111  335555555555555443333333344566777788


Q ss_pred             cc
Q 003199          441 VS  442 (840)
Q Consensus       441 ~~  442 (840)
                      +.
T Consensus       382 ~~  383 (597)
T 3oja_B          382 KI  383 (597)
T ss_dssp             CT
T ss_pred             Cc
Confidence            65

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=1e-36  Score=331.82  Aligned_cols=266  Identities=23%  Similarity=0.306  Sum_probs=197.3

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|...+.||+|+||.||+|... +|+.||||++....         .......+.+|++++++++||||+++++++..
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   80 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD---------KPLFALRTLREIKILKHFKHENIITIFNIQRP   80 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS---------SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc---------cchHHHHHHHHHHHHHhCcCCCcCCeeeeecc
Confidence            356888899999999999999665 78999999984321         12345678899999999999999999998865


Q ss_pred             C-----ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          604 L-----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       604 ~-----~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      .     ...++||||++ |+|.+++...  .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+
T Consensus        81 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~  154 (353)
T 2b9h_A           81 DSFENFNEVYIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVC  154 (353)
T ss_dssp             SCSTTCCCEEEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEEC
T ss_pred             cccCccceEEEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEcCCCcEEEE
Confidence            4     67799999996 6999998874  68999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCC-------cceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchh
Q 003199          679 DFGIAKVLQARGGKD-------STTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII  750 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~  750 (840)
                      |||+++.........       .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+...  ....
T Consensus       155 Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~  232 (353)
T 2b9h_A          155 DFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDY--RHQL  232 (353)
T ss_dssp             CCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHH
T ss_pred             ecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCc--HHHH
Confidence            999998764321111       11233578999999998754 6789999999999999999999999975321  0000


Q ss_pred             hhhhhhhcccc-----------chhhhc---ccccCCC----cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          751 YWVSIKVDTKE-----------GIMEVL---DKKLSGS----FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       751 ~~~~~~~~~~~-----------~~~~~~---~~~~~~~----~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ...........           ...+..   .......    +......+.+++.+|++.||++|||+.|++++-
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  307 (353)
T 2b9h_A          233 LLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHP  307 (353)
T ss_dssp             HHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             HHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCc
Confidence            00000000000           000000   0000000    112335677888999999999999999999863

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.6e-36  Score=333.39  Aligned_cols=199  Identities=26%  Similarity=0.284  Sum_probs=168.4

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CC-----Cccee
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HK-----NIVKL  597 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l  597 (840)
                      .++|...+.||+|+||+||+|... +++.||||++...           ......+..|+.+++.++ |+     +++++
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-----------~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~  121 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-----------KAFLNQAQIEVRLLELMNKHDTEMKYYIVHL  121 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-----------HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-----------HHHHHHHHHHHHHHHHHHhcccccceeEEEe
Confidence            467889999999999999999654 7899999998432           123456677888888775 44     49999


Q ss_pred             eeEEecCccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc--CCCC
Q 003199          598 YCYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD--VNYQ  674 (840)
Q Consensus       598 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~--~~~~  674 (840)
                      ++++......++||||++ |+|.+++.... ..+++..+..++.|++.||+|||+ +..+||||||||+|||++  .++.
T Consensus       122 ~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~-~~~~ivHrDlkp~NIll~~~~~~~  199 (382)
T 2vx3_A          122 KRHFMFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT-PELSIIHCDLKPENILLCNPKRSA  199 (382)
T ss_dssp             EEEEEETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS-TTTCEECCCCSGGGEEESSTTSCC
T ss_pred             eeeeccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc-CCCCEEcCCCCcccEEEecCCCCc
Confidence            999999999999999995 59999998753 468999999999999999999994 127899999999999995  4778


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCC
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD  742 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  742 (840)
                      +||+|||+|+....      ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.
T Consensus       200 ~kL~DFG~a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          200 IKIVDFGSSCQLGQ------RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             EEECCCTTCEETTC------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             EEEEeccCceeccc------ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999976532      223467899999999999999999999999999999999999999753

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=5.1e-37  Score=330.32  Aligned_cols=253  Identities=26%  Similarity=0.329  Sum_probs=174.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHH-HHhccCCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVE-TLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~  603 (840)
                      ++|...+.||+|+||.||+|... +|+.||||++.....         ......+..|+. +++.++||||+++++++..
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~   92 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD---------EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFR   92 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC---------HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEEC
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC---------chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEe
Confidence            46778889999999999999664 799999999854321         122334455555 7788899999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhc----CCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCCEEEcCCCCCeee
Q 003199          604 LYCNLLVYEYMPNGNLWDALHK----GLVHLDWPTRHKIAFGVAQGLAYLHHGLLS-PIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      .+..++||||+++ +|.+++..    ....+++..+..++.|++.||.|||+   . +|+||||||+||+++.++.+||+
T Consensus        93 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~dlkp~NIll~~~~~~kl~  168 (327)
T 3aln_A           93 EGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRDIKPSNILLDRSGNIKLC  168 (327)
T ss_dssp             SSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSCCCGGGEEEETTTEEEEC
T ss_pred             CCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECCCCHHHEEEcCCCCEEEc
Confidence            9999999999975 88777653    23478999999999999999999999   7 99999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCcccc----ccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA----YSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      |||+++....    ........||+.|+|||++    .+..++.++||||||+++|||++|+.||............   
T Consensus       169 Dfg~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~---  241 (327)
T 3aln_A          169 DFGISGQLVD----SIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQ---  241 (327)
T ss_dssp             CCSSSCC----------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CC---
T ss_pred             cCCCceeccc----ccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHH---
Confidence            9999976633    1222344799999999998    4567899999999999999999999999753211110000   


Q ss_pred             hhhccccchhhhcccccCC-CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          755 IKVDTKEGIMEVLDKKLSG-SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                              ........+.. ........+.+++.+||+.||++|||+.+++++
T Consensus       242 --------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  286 (327)
T 3aln_A          242 --------VVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKH  286 (327)
T ss_dssp             --------CCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             --------HhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence                    00000001110 011223467778889999999999999999875

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=6.7e-37  Score=341.49  Aligned_cols=251  Identities=25%  Similarity=0.349  Sum_probs=184.7

Q ss_pred             cCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~  606 (840)
                      |...+.||+|+||+||.+...+|+.||||++...             ..+.+.+|+++++++ +||||+++++++.+...
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-------------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~   83 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-------------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRF   83 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-------------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSE
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-------------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCe
Confidence            4456789999999998877778999999988432             134567899999886 89999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCC------CChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC--------
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVH------LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN--------  672 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~------~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~--------  672 (840)
                      .++||||++ |+|.+++......      ..+..+..++.||+.||+|||+   .+|+||||||+||+++.+        
T Consensus        84 ~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~~~~~~  159 (434)
T 2rio_A           84 LYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQ  159 (434)
T ss_dssp             EEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEECCHHHHSCCT
T ss_pred             EEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCcccccccc
Confidence            999999995 6999999865311      1344567899999999999999   999999999999999754        


Q ss_pred             -----CCCeeecccchhhhhccCCC-CcceecccccccccCcccccc-------CCCCccccchhHHHHHHHHHh-CCCC
Q 003199          673 -----YQPKVADFGIAKVLQARGGK-DSTTTVIAGTYGYLAPEYAYS-------SKATTKCDVYSFGVVLMELIT-GRKP  738 (840)
Q Consensus       673 -----~~~kl~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slG~il~el~t-g~~p  738 (840)
                           +.+||+|||+++........ ........||+.|+|||++.+       ..++.++|||||||++|||++ |+.|
T Consensus       160 ~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~P  239 (434)
T 2rio_A          160 TGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHP  239 (434)
T ss_dssp             TCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCT
T ss_pred             cCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCC
Confidence                 47999999999876432111 112234679999999999865       578999999999999999999 9999


Q ss_pred             CCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          739 VEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      |.+.....   .....    ....    ..............++.+++.+|++.||++|||+.|++++
T Consensus       240 f~~~~~~~---~~i~~----~~~~----~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  296 (434)
T 2rio_A          240 FGDKYSRE---SNIIR----GIFS----LDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH  296 (434)
T ss_dssp             TCSTTTHH---HHHHH----TCCC----CCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CCCchhhH---HHHhc----CCCC----cccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence            96532111   00000    0000    0000011123456678889999999999999999999875

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=4.3e-37  Score=331.55  Aligned_cols=255  Identities=20%  Similarity=0.258  Sum_probs=171.8

Q ss_pred             HHHhcCccC-eeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          524 ILEAMTEKN-KVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       524 ~~~~~~~~~-~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      +.++|...+ .||+|+||.||+|... +|+.||||++....           .   ...+....++.+.||||+++++++
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----------~---~~~e~~~~~~~~~h~~i~~~~~~~   91 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-----------K---ARQEVDHHWQASGGPHIVCILDVY   91 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH-----------H---HHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-----------H---HHHHHHHHHHhcCCCChHHHHHHH
Confidence            345677754 6999999999999665 79999999984321           1   111222335566899999999998


Q ss_pred             ec----CccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---CC
Q 003199          602 SS----LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---NY  673 (840)
Q Consensus       602 ~~----~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~  673 (840)
                      ..    ....++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||+   ++|+||||||+||+++.   ++
T Consensus        92 ~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~---~~ivH~dlkp~NIll~~~~~~~  168 (336)
T 3fhr_A           92 ENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDA  168 (336)
T ss_dssp             EEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTC
T ss_pred             hhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEecCCCc
Confidence            76    445799999999999999998753 468999999999999999999999   99999999999999976   45


Q ss_pred             CCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          674 QPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       674 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      .+||+|||+++....     .......||+.|+|||++.+..++.++||||||+++|||++|+.||..............
T Consensus       169 ~~kl~Dfg~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~  243 (336)
T 3fhr_A          169 VLKLTDFGFAKETTQ-----NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKR  243 (336)
T ss_dssp             CEEECCCTTCEEC---------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC--------------
T ss_pred             eEEEeccccceeccc-----cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHH
Confidence            599999999976432     223345789999999999888899999999999999999999999975422111000000


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                        ..      .........+.+......+.+++.+|++.||++|||+.|++++-.
T Consensus       244 --~~------~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~  290 (336)
T 3fhr_A          244 --RI------RLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPW  290 (336)
T ss_dssp             ---------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHH
T ss_pred             --hh------hccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCcc
Confidence              00      000000011111223456778888999999999999999999643

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=2.2e-36  Score=331.89  Aligned_cols=261  Identities=23%  Similarity=0.250  Sum_probs=196.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-----------CCC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-----------HKN  593 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~n  593 (840)
                      .+|...+.||+|+||+||+|.. .+|+.||||++...           ....+.+.+|+.+++++.           |+|
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----------~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~   87 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-----------KVYTEAAEDEIKLLQRVNDADNTKEDSMGANH   87 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-----------HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTT
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-----------ccchhhhhHHHHHHHHhhcccccchhccccch
Confidence            4688889999999999999965 57899999998432           123456788999988886           899


Q ss_pred             cceeeeEEecCc----cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCCE
Q 003199          594 IVKLYCYFSSLY----CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLS-PIIHRDIKSTNI  667 (840)
Q Consensus       594 iv~l~~~~~~~~----~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Ni  667 (840)
                      |+++++++....    ..++||||+ +++|.+++... ...+++..+..++.||+.||+|||+   + +|+||||||+||
T Consensus        88 i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NI  163 (373)
T 1q8y_A           88 ILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENV  163 (373)
T ss_dssp             BCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGE
T ss_pred             HHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHe
Confidence            999999987654    779999999 99999999764 2458999999999999999999999   8 999999999999


Q ss_pred             EEc------CCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCC
Q 003199          668 LLD------VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVED  741 (840)
Q Consensus       668 ll~------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  741 (840)
                      +++      ..+.+||+|||+++....      ......||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus       164 ll~~~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  237 (373)
T 1q8y_A          164 LMEIVDSPENLIQIKIADLGNACWYDE------HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP  237 (373)
T ss_dssp             EEEEEETTTTEEEEEECCCTTCEETTB------CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             EEeccCCCcCcceEEEcccccccccCC------CCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            995      344799999999976533      22345789999999999999999999999999999999999999975


Q ss_pred             CCCCCcc-----hhhhhhhhhcc-----------------ccch-----------hhhcccccCCCcHHHHHHHHHHHHH
Q 003199          742 DFGDNKN-----IIYWVSIKVDT-----------------KEGI-----------MEVLDKKLSGSFRDEMIQVLRIAIR  788 (840)
Q Consensus       742 ~~~~~~~-----~~~~~~~~~~~-----------------~~~~-----------~~~~~~~~~~~~~~~~~~l~~l~~~  788 (840)
                      .......     ...........                 ....           ..... ............+.+++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~  316 (373)
T 1q8y_A          238 DEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLT-EKYKFSKDEAKEISDFLSP  316 (373)
T ss_dssp             -------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHH-HTTCCCHHHHHHHHHHHGG
T ss_pred             CcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhh-hcccCCcchHHHHHHHHHH
Confidence            4321100     00000000000                 0000           00000 0011224556788899999


Q ss_pred             ccCCCCCCCCCHHHHHHHhh
Q 003199          789 CTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       789 cl~~dP~~Rps~~evl~~L~  808 (840)
                      |++.||++|||++|++++-.
T Consensus       317 ~L~~dP~~Rpt~~ell~hp~  336 (373)
T 1q8y_A          317 MLQLDPRKRADAGGLVNHPW  336 (373)
T ss_dssp             GGCSSTTTCBCHHHHHTCGG
T ss_pred             HhccCccccCCHHHHhhChh
Confidence            99999999999999998744

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=326.20  Aligned_cols=253  Identities=24%  Similarity=0.327  Sum_probs=179.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||.||+|... +|+.||||++.....        .....+.+.++..+++.++||||+++++++.+.
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~   96 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN--------KEENKRILMDLDVVLKSHDCPYIVQCFGTFITN   96 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSC--------HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEeccccc--------chHHHHHHHHHHHHHHhcCCCceeeEEEEEecC
Confidence            56888899999999999999765 799999999854321        122234455566678888999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLS-PIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+ ++.+..........+++..+..++.|++.||+|||+   . +|+||||||+||+++.++.+||+|||++
T Consensus        97 ~~~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  172 (318)
T 2dyl_A           97 TDVFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKE---KHGVIHRDVKPSNILLDERGQIKLCDFGIS  172 (318)
T ss_dssp             SEEEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             CcEEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh---hCCEEeCCCCHHHEEECCCCCEEEEECCCc
Confidence            9999999999 556665555444578999999999999999999998   6 9999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      .....    ........||+.|+|||.+.     ...++.++||||||+++|||++|+.||.....   ....+.... .
T Consensus       173 ~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~~~~-~  244 (318)
T 2dyl_A          173 GRLVD----DKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKT---DFEVLTKVL-Q  244 (318)
T ss_dssp             ------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCS---HHHHHHHHH-H
T ss_pred             hhccC----CccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCc---cHHHHHHHh-c
Confidence            76643    12233456899999999984     45688999999999999999999999975211   111111110 0


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..       ..... ........+.+++.+||+.||.+||++.+++++
T Consensus       245 ~~-------~~~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          245 EE-------PPLLP-GHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             SC-------CCCCC-SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             cC-------CCCCC-ccCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            00       00011 011123456778889999999999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1e-35  Score=328.42  Aligned_cols=334  Identities=20%  Similarity=0.187  Sum_probs=273.3

Q ss_pred             ccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCe
Q 003199           66 RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTD  145 (840)
Q Consensus        66 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~  145 (840)
                      .+++++.|++++|.++...+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+ +.+..|..|.++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCE
Confidence            46789999999999987666668889999999999999997777899999999999999997 55566677899999999


Q ss_pred             eeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccc
Q 003199          146 LDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKL  225 (840)
Q Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l  225 (840)
                      |+|++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            99999999966556678899999999999999988888899999999999999999854   356678888999988887


Q ss_pred             cccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCccc
Q 003199          226 SGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTV  305 (840)
Q Consensus       226 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  305 (840)
                      ++                             +...++|++|++++|.+... |..  ..++|+.|++++|++++.  ..+
T Consensus       199 ~~-----------------------------~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          199 ST-----------------------------LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             SE-----------------------------EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGG
T ss_pred             cc-----------------------------cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHH
Confidence            62                             22335788999999999844 433  247899999999999864  568


Q ss_pred             CCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCE
Q 003199          306 GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNV  385 (840)
Q Consensus       306 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  385 (840)
                      ..+++|++|+|++|++++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~  322 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN  322 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCE
Confidence            889999999999999998888999999999999999999984 5666778899999999999998 56777888999999


Q ss_pred             EECcCccccccCCchhhcc-CCCeEEccCCCCcCcCCcccccCCCcccccCCCCCccc
Q 003199          386 LDLSNNLLTGYIPESLCEL-LPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCVS  442 (840)
Q Consensus       386 L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~~~p~~~~~~~~~~~~~~n~~~c~~  442 (840)
                      |+|++|++++. |  +..+ .++.|++++|++.+.....+........+.+++..|..
T Consensus       323 L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          323 LYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             EECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCT
T ss_pred             EECCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecc
Confidence            99999999854 3  2223 46889999999998766555444444556677777753

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.4e-37  Score=327.81  Aligned_cols=252  Identities=24%  Similarity=0.329  Sum_probs=191.1

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc----CCCCcce
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI----RHKNIVK  596 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l----~h~niv~  596 (840)
                      ....++|...+.||+|+||.||+|.. .+|+.||||++........    ........+.+|+.++.++    +|+||++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~----~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~  102 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGW----SPLSDSVTCPLEVALLWKVGAGGGHPGVIR  102 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC------------CCCCHHHHHHHHHHSSCCCSSBCC
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEeccccccc----ccchhhHHHHHHHHHHHhhcccCCCCCeee
Confidence            44567899999999999999999965 4789999999854432110    0111223456788888888    8999999


Q ss_pred             eeeEEecCccceEEEee-cCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc-CCCC
Q 003199          597 LYCYFSSLYCNLLVYEY-MPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD-VNYQ  674 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~-~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~  674 (840)
                      +++++...+..++|+|| +.+++|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++ .++.
T Consensus       103 ~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~  178 (312)
T 2iwi_A          103 LLDWFETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILIDLRRGC  178 (312)
T ss_dssp             EEEEC-----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEETTTTE
T ss_pred             EEEEEecCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEeCCCCe
Confidence            99999999999999999 78999999998754 68999999999999999999999   8999999999999999 8899


Q ss_pred             CeeecccchhhhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       675 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      +||+|||+++....     .......||+.|+|||++.+..+ +.++||||||+++|||++|+.||....       .. 
T Consensus       179 ~kl~dfg~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~-  245 (312)
T 2iwi_A          179 AKLIDFGSGALLHD-----EPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-------EI-  245 (312)
T ss_dssp             EEECCCSSCEECCS-----SCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HH-
T ss_pred             EEEEEcchhhhccc-----CcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-------HH-
Confidence            99999999976532     22344568999999999877666 458999999999999999999996420       00 


Q ss_pred             hhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                         ...        .......   ....+.+++.+|++.||++|||+.|++++-.
T Consensus       246 ---~~~--------~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~  286 (312)
T 2iwi_A          246 ---LEA--------ELHFPAH---VSPDCCALIRRCLAPKPSSRPSLEEILLDPW  286 (312)
T ss_dssp             ---HHT--------CCCCCTT---SCHHHHHHHHHHTCSSTTTSCCHHHHHHSTT
T ss_pred             ---hhh--------ccCCccc---CCHHHHHHHHHHccCChhhCcCHHHHhcChh
Confidence               000        0011122   2345667888999999999999999998643

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=4.9e-37  Score=328.99  Aligned_cols=249  Identities=23%  Similarity=0.328  Sum_probs=197.7

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC--CCCcceeeeE
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR--HKNIVKLYCY  600 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~  600 (840)
                      +.++|+..+.||+|+||.||+|.. .+|+.||||++..........    ....+.+.+|+.++++++  |+||++++++
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~----~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~  116 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGE----LPNGTRVPMEVVLLKKVSSGFSGVIRLLDW  116 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEE----CTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhh----hhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence            345688899999999999999964 578999999986543221000    011234567899999996  5999999999


Q ss_pred             EecCccceEEEeecCC-CChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc-CCCCCeee
Q 003199          601 FSSLYCNLLVYEYMPN-GNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD-VNYQPKVA  678 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~-gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~  678 (840)
                      +......++|+||+.+ ++|.+++.... .+++..+..++.|++.||+|||+   .+|+||||||+||+++ +++.+||+
T Consensus       117 ~~~~~~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~kL~  192 (320)
T 3a99_A          117 FERPDSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLI  192 (320)
T ss_dssp             EECSSEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEEC
T ss_pred             EecCCcEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEEeCCCCCEEEe
Confidence            9999999999999976 89999998754 68999999999999999999999   9999999999999999 78899999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      |||+++....     .......||+.|+|||++.+..+ +.++||||||+++|||++|+.||....       ..    .
T Consensus       193 Dfg~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------~~----~  256 (320)
T 3a99_A          193 DFGSGALLKD-----TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EI----I  256 (320)
T ss_dssp             CCTTCEECCS-----SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HH----H
T ss_pred             eCcccccccc-----ccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------hh----h
Confidence            9999976532     22334569999999999877665 688999999999999999999996420       00    0


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHh
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL  807 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L  807 (840)
                      ..        .......+   ...+.+++.+||+.||++|||+.|++++-
T Consensus       257 ~~--------~~~~~~~~---~~~~~~li~~~l~~dp~~Rps~~~ll~hp  295 (320)
T 3a99_A          257 RG--------QVFFRQRV---SSECQHLIRWCLALRPSDRPTFEEIQNHP  295 (320)
T ss_dssp             HC--------CCCCSSCC---CHHHHHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred             cc--------cccccccC---CHHHHHHHHHHccCChhhCcCHHHHhcCH
Confidence            00        00111222   24566788899999999999999999863

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=3.1e-36  Score=328.28  Aligned_cols=258  Identities=23%  Similarity=0.303  Sum_probs=196.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CC-cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCC------ccee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SG-EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN------IVKL  597 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l  597 (840)
                      ++|+..+.||+|+||+||+|... ++ +.||||++...           ....+.+.+|+.+++.++|++      ++.+
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-----------~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~   87 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-----------GKYREAARLEINVLKKIKEKDKENKFLCVLM   87 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-----------HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCE
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-----------ccchhHHHHHHHHHHHHhhcCCCCceeEEEe
Confidence            57888999999999999999654 44 78999998422           123466788999999998766      8999


Q ss_pred             eeEEecCccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEE-------
Q 003199          598 YCYFSSLYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILL-------  669 (840)
Q Consensus       598 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill-------  669 (840)
                      ++++......++||||+ ++++.+++.... ..+++.++..++.|++.||+|||+   ++|+||||||+||++       
T Consensus        88 ~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~~  163 (355)
T 2eu9_A           88 SDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFET  163 (355)
T ss_dssp             EEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEESCCCEEE
T ss_pred             eeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecccccc
Confidence            99999999999999999 677777776543 468999999999999999999999   999999999999999       


Q ss_pred             ------------cCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCC
Q 003199          670 ------------DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRK  737 (840)
Q Consensus       670 ------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~  737 (840)
                                  +.++.+||+|||+++....      ......||+.|+|||++.+..++.++|||||||++|||++|+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~  237 (355)
T 2eu9_A          164 LYNEHKSCEEKSVKNTSIRVADFGSATFDHE------HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFT  237 (355)
T ss_dssp             EECCC-CCCEEEESCCCEEECCCTTCEETTS------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             cccccccccccccCCCcEEEeecCccccccc------cccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCC
Confidence                        5678999999999976432      2234579999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhhhhhhh-ccccch---------------------------hhhccc--ccCCCcHHHHHHHHHHHH
Q 003199          738 PVEDDFGDNKNIIYWVSIKV-DTKEGI---------------------------MEVLDK--KLSGSFRDEMIQVLRIAI  787 (840)
Q Consensus       738 p~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------------~~~~~~--~~~~~~~~~~~~l~~l~~  787 (840)
                      ||.....  ........... ......                           ......  ............+.+++.
T Consensus       238 pf~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  315 (355)
T 2eu9_A          238 LFQTHEN--REHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMR  315 (355)
T ss_dssp             SCCCSSH--HHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHH
T ss_pred             CCCCCCH--HHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHH
Confidence            9975321  11100000000 000000                           000000  000111233457889999


Q ss_pred             HccCCCCCCCCCHHHHHHH
Q 003199          788 RCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       788 ~cl~~dP~~Rps~~evl~~  806 (840)
                      +|++.||++|||+.|++++
T Consensus       316 ~~L~~dP~~Rpt~~e~l~h  334 (355)
T 2eu9_A          316 RMLEFDPAQRITLAEALLH  334 (355)
T ss_dssp             HHTCSSTTTSCCHHHHTTS
T ss_pred             HHhcCChhhCcCHHHHhcC
Confidence            9999999999999999876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.4e-35  Score=318.95  Aligned_cols=307  Identities=24%  Similarity=0.333  Sum_probs=160.3

Q ss_pred             CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCC
Q 003199           13 FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVT   92 (840)
Q Consensus        13 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   92 (840)
                      +..+++|++|++++|.++ .+|. +..+++|++|++++|   .+..++.  +..+++|++|++++|.++..  +.+..++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n---~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~  110 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGN---QITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLT  110 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSS---CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             chhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCC---ccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCC
Confidence            344555666666666665 3332 555666666666666   3333333  55555555555555555432  2355555


Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEe
Q 003199           93 SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQL  172 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  172 (840)
                      +|++|+|++|.+++ .+. +..+++|+.|++++|.                         .... +..+..+++|++|++
T Consensus       111 ~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~-------------------------~~~~-~~~~~~l~~L~~L~l  162 (347)
T 4fmz_A          111 NLRELYLNEDNISD-ISP-LANLTKMYSLNLGANH-------------------------NLSD-LSPLSNMTGLNYLTV  162 (347)
T ss_dssp             TCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCT-------------------------TCCC-CGGGTTCTTCCEEEC
T ss_pred             cCCEEECcCCcccC-chh-hccCCceeEEECCCCC-------------------------Cccc-ccchhhCCCCcEEEe
Confidence            55555555555552 222 4455555555555553                         3211 222444445555555


Q ss_pred             eccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhccccccccc
Q 003199          173 YNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV  252 (840)
Q Consensus       173 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  252 (840)
                      ++|.+.+..+  +..+++|++|++++|++.+..+  +..+++|+.|++++|.+++..+                      
T Consensus       163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----------------------  216 (347)
T 4fmz_A          163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP----------------------  216 (347)
T ss_dssp             CSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----------------------
T ss_pred             cCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch----------------------
Confidence            5554443322  4455555555555555543221  4445555555555555442110                      


Q ss_pred             CCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhccc
Q 003199          253 LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRA  332 (840)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  332 (840)
                          +..+++|++|++++|++++. +. +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+
T Consensus       217 ----~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l  286 (347)
T 4fmz_A          217 ----VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNL  286 (347)
T ss_dssp             ----GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             ----hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCC
Confidence                33344444444444444422 21 44555555555555555542  2355556666666666666543  345566


Q ss_pred             CcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCcccc
Q 003199          333 ISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT  394 (840)
Q Consensus       333 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  394 (840)
                      ++|+.|++++|++++..|..++.+++|+.|+|++|++++..|  +..+++|++|++++|+|+
T Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            666677777776666666666667777777777777765555  666777777777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.9e-35  Score=341.54  Aligned_cols=314  Identities=20%  Similarity=0.177  Sum_probs=238.0

Q ss_pred             CCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCC
Q 003199           15 PMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSL   94 (840)
Q Consensus        15 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   94 (840)
                      .+.+++.|++++|.++...+..|..+++|+.|+|++|   .+..+++..|..+++|+.|+|++|.+++..|..|+++++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL---QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS---CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC---CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            4688999999999999777777899999999999999   7788888899999999999999999999888999999999


Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeec
Q 003199           95 TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN  174 (840)
Q Consensus        95 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  174 (840)
                      ++|+|++|.|++..+..|..+++|++|+|++|. +.+..|..|..+++|++|+|++|.+++.   .+..+++|+.|++++
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY  201 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhccc
Confidence            999999999996666678999999999999997 5667777899999999999999999964   266789999999999


Q ss_pred             cccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCC
Q 003199          175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP  254 (840)
Q Consensus       175 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  254 (840)
                      |.+++.     ...++|+.|++++|.+....+..   .++|+.|+|++|.+++                          +
T Consensus       202 n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--------------------------~  247 (597)
T 3oja_B          202 NLLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--------------------------T  247 (597)
T ss_dssp             SCCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--------------------------C
T ss_pred             Cccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--------------------------C
Confidence            999853     34568899999999887443322   2466777777766652                          1


Q ss_pred             cccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCc
Q 003199          255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAIS  334 (840)
Q Consensus       255 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  334 (840)
                      ..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++                         +|..+..+++
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------------l~~~~~~l~~  302 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-------------------------LNLYGQPIPT  302 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-------------------------EECSSSCCTT
T ss_pred             hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-------------------------CCcccccCCC
Confidence            234455555555555555555555555555555555555554443                         2344445556


Q ss_pred             ccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          335 LVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       335 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      |+.|+|++|.++ .+|..++.+++|+.|+|++|+|++..   +..+++|+.|+|++|++++..+
T Consensus       303 L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          303 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence            666666666666 45555666667777777777776432   5567788888888888886543

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=2.2e-36  Score=345.30  Aligned_cols=260  Identities=25%  Similarity=0.295  Sum_probs=194.5

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ...+|...+.||+|+||.||+|.. .+|+.||||++....         .....+.+.+|++++++++||||+++++++.
T Consensus        12 ~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~---------~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~   82 (676)
T 3qa8_A           12 TCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL---------SPKNRERWCLEIQIMKKLNHPNVVSAREVPD   82 (676)
T ss_dssp             -----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC---------CHHHHHHHHHHHHHHHHCCBTTBCCEEECCT
T ss_pred             CCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC---------CHHHHHHHHHHHHHHHhCCCCCCCceeeeec
Confidence            447899999999999999999965 578999999884321         1234567899999999999999999999876


Q ss_pred             c------CccceEEEeecCCCChHHHhhcCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC
Q 003199          603 S------LYCNLLVYEYMPNGNLWDALHKGL--VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ  674 (840)
Q Consensus       603 ~------~~~~~lV~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~  674 (840)
                      .      ....++||||+++|+|.+++....  ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.
T Consensus        83 ~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~  159 (676)
T 3qa8_A           83 GLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQ  159 (676)
T ss_dssp             TTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSS
T ss_pred             ccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCC
Confidence            5      667799999999999999998753  358999999999999999999999   99999999999999997765


Q ss_pred             ---CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhh
Q 003199          675 ---PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY  751 (840)
Q Consensus       675 ---~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~  751 (840)
                         +||+|||++.....    ........||+.|+|||.+.+..++.++||||||+++|||++|+.||....    ....
T Consensus       160 ~~~vKL~DFG~a~~~~~----~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~----~~~~  231 (676)
T 3qa8_A          160 RLIHKIIDLGYAKELDQ----GELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW----QPVQ  231 (676)
T ss_dssp             SCEEEECSCCCCCBTTS----CCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC----HHHH
T ss_pred             ceeEEEccccccccccc----ccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc----chhh
Confidence               89999999987643    222345679999999999999999999999999999999999999996421    1111


Q ss_pred             hhhhhhcccc---chhhh------cccc---cCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 003199          752 WVSIKVDTKE---GIMEV------LDKK---LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV  803 (840)
Q Consensus       752 ~~~~~~~~~~---~~~~~------~~~~---~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ev  803 (840)
                      |.........   .....      ....   ...........+.+++.+|+..||++|||+.|+
T Consensus       232 ~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el  295 (676)
T 3qa8_A          232 WHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN  295 (676)
T ss_dssp             SSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred             hhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence            1110000000   00000      0000   011122345677888889999999999999773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.1e-34  Score=314.91  Aligned_cols=306  Identities=26%  Similarity=0.363  Sum_probs=253.4

Q ss_pred             ccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCC
Q 003199           64 IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL  143 (840)
Q Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L  143 (840)
                      +..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+++ ++. +..+++|++|++++|. + ..+ ..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~-i-~~~-~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNK-I-TDI-SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-C-CCC-GGGTTCTTC
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCc-c-cCc-hHHcCCCcC
Confidence            4567777777777777763 33 37778888888888888884 343 8888888888888886 2 233 368899999


Q ss_pred             CeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccc
Q 003199          144 TDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN  223 (840)
Q Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N  223 (840)
                      ++|++++|.+++. +. +..+++|++|++++|...... ..+..+++|++|++++|.+....+  +..+++|+.|++++|
T Consensus       113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            9999999999854 33 889999999999999665443 448999999999999999985543  888999999999999


Q ss_pred             cccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCc
Q 003199          224 KLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIAN  303 (840)
Q Consensus       224 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  303 (840)
                      .+.+                         ++. +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+ 
T Consensus       188 ~l~~-------------------------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          188 QIED-------------------------ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             CCCC-------------------------CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             cccc-------------------------ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence            8873                         222 6778899999999999985443  8889999999999999997655 


Q ss_pred             ccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCC
Q 003199          304 TVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSL  383 (840)
Q Consensus       304 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  383 (840)
                       +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|+|++|++++..|..+..+++|
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence             88999999999999999864  4688999999999999999964  458899999999999999999999999999999


Q ss_pred             CEEECcCccccccCCchhhcc-CCCeEEccCCCCc
Q 003199          384 NVLDLSNNLLTGYIPESLCEL-LPNSINFSNNRLS  417 (840)
Q Consensus       384 ~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~  417 (840)
                      ++|+|++|++++..|  +..+ .++.|++++|+++
T Consensus       314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999999997766  5555 5789999999885

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=6e-35  Score=306.67  Aligned_cols=239  Identities=12%  Similarity=0.044  Sum_probs=182.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      .+|...+.||+|+||.||+|... +|+.||||++......       .....+.+.+|+.++++++||||+++++++.+.
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~-------~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~  103 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVL-------PDDVLQETLSRTLRLSRIDKPGVARVLDVVHTR  103 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCS-------CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECccccc-------CHHHHHHHHHHHHHHhcCCCCCcceeeEEEEEC
Confidence            46888899999999999999665 6899999998543321       133457789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++++|.+++..+   ....++..++.|++.||+|||+   ++|+||||||+||+++.++.+||+++|   
T Consensus       104 ~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH~---~givH~Dikp~NIll~~~g~~kl~~~~---  174 (286)
T 3uqc_A          104 AGGLVVAEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPA---  174 (286)
T ss_dssp             TEEEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEETTSCEEECSCC---
T ss_pred             CcEEEEEEecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHHH---CCCccCCCCcccEEEcCCCCEEEEecc---
Confidence            9999999999999999999653   3556788999999999999999   999999999999999999999998543   


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                                          |++|       ++.++|||||||++|||++|+.||.+............  ........ 
T Consensus       175 --------------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~--~~~~~~~~-  224 (286)
T 3uqc_A          175 --------------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAER--DTAGQPIE-  224 (286)
T ss_dssp             --------------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCB--CTTSCBCC-
T ss_pred             --------------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHH--HhccCCCC-
Confidence                                3333       68899999999999999999999986422110000000  00000000 


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFES  817 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~  817 (840)
                         ......   .....+.+++.+||+.||++| |+.|+++.|+++.......
T Consensus       225 ---~~~~~~---~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~~~  270 (286)
T 3uqc_A          225 ---PADIDR---DIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVADRT  270 (286)
T ss_dssp             ---HHHHCT---TSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-----
T ss_pred             ---hhhccc---CCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCCcc
Confidence               000111   123456778889999999999 9999999999877655433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.1e-33  Score=302.52  Aligned_cols=288  Identities=21%  Similarity=0.274  Sum_probs=188.1

Q ss_pred             cccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeec
Q 003199           69 KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDM  148 (840)
Q Consensus        69 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L  148 (840)
                      +|+.+++++|.++ .+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|+ +.+..|..|.++++|++|+|
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEEC
Confidence            3445555555554 3343332  455666666666655545556666666666666554 33444555666666666666


Q ss_pred             cCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCc--ccCCcCCCCCCCcceecccccccc
Q 003199          149 SVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT--GEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      ++|+++ .+|..+.  ++|++|++++|+++...+..|.++++|++|++++|+++  +..+..+..+ +|+.|++++|+++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            666666 3333333  56677777777766666666667777777777777764  2555666666 7777777777776


Q ss_pred             ccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccC
Q 003199          227 GPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVG  306 (840)
Q Consensus       227 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  306 (840)
                      +                         +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+.
T Consensus       186 ~-------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          186 G-------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             S-------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             c-------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence            3                         122221  4666777777777766666777777777777777777777777777


Q ss_pred             CCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccC------ccccchhcccCCccC--CCcchhcc
Q 003199          307 NARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGN------LKKLNLLMLQSNKLN--SSIPNSLS  378 (840)
Q Consensus       307 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~  378 (840)
                      .+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|..      ...|+.|++++|++.  +..|.+|.
T Consensus       239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~  317 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR  317 (332)
T ss_dssp             GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence            7788888888888887 66777778888888888888888666666654      356888888888887  57778888


Q ss_pred             cccCCCEEECcCcc
Q 003199          379 SLKSLNVLDLSNNL  392 (840)
Q Consensus       379 ~l~~L~~L~l~~N~  392 (840)
                      .+++|+.|++++|+
T Consensus       318 ~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          318 CVTDRLAIQFGNYK  331 (332)
T ss_dssp             TBCCSTTEEC----
T ss_pred             ccchhhhhhccccc
Confidence            88999999988874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=9.1e-35  Score=343.04  Aligned_cols=238  Identities=22%  Similarity=0.296  Sum_probs=189.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC--CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN--SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .+|...+.||+|+||+||+|...  +|+.||||++....         .......+.+|++++++++||||+++++++..
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~---------~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  150 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG---------DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEH  150 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC---------CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC---------CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEee
Confidence            57888999999999999999764  68999999885322         12345678899999999999999999999987


Q ss_pred             Ccc-----ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          604 LYC-----NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       604 ~~~-----~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      ...     .++||||+++++|.+++..   .++|.++..++.||+.||+|||+   ++||||||||+|||++.+ .+||+
T Consensus       151 ~~~~~~~~~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~-~~kl~  223 (681)
T 2pzi_A          151 TDRHGDPVGYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKLI  223 (681)
T ss_dssp             ECTTSCEEEEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS-CEEEC
T ss_pred             cCCCCCceeEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC-cEEEE
Confidence            665     6999999999999988765   68999999999999999999999   999999999999999986 89999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+++.....       ....||+.|+|||++.+. ++.++|||||||++|||++|..||.......            
T Consensus       224 DFG~a~~~~~~-------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~------------  283 (681)
T 2pzi_A          224 DLGAVSRINSF-------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG------------  283 (681)
T ss_dssp             CCTTCEETTCC-------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS------------
T ss_pred             ecccchhcccC-------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccccc------------
Confidence            99999765321       345799999999988765 4899999999999999999998876421100            


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHHhhh
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-MNEVVQLLAE  809 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-~~evl~~L~~  809 (840)
                          .    .  ...........+.+++.+|++.||++||+ ++++.+.+..
T Consensus       284 ----~----~--~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~  325 (681)
T 2pzi_A          284 ----L----P--EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG  325 (681)
T ss_dssp             ----C----C--TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             ----c----c--ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence                0    0  00001122356778899999999999995 5555555543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.7e-35  Score=326.25  Aligned_cols=241  Identities=18%  Similarity=0.151  Sum_probs=175.4

Q ss_pred             hcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC-CCcceee------
Q 003199          527 AMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH-KNIVKLY------  598 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~------  598 (840)
                      .|...+.||+|+||+||+|. ..+|+.||||++......       .....+.+.+|+.+++.+.| +|...+.      
T Consensus        79 ~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~-------~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~  151 (413)
T 3dzo_A           79 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERP-------PSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFI  151 (413)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC-----------CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBC
T ss_pred             eEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCc-------cHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccc
Confidence            35567789999999999996 557999999998533211       12234668899999999987 3221111      


Q ss_pred             ---------------eEEec-----CccceEEEeecCCCChHHHhh------cCCCCCChHHHHHHHHHHHHHHHHHhhc
Q 003199          599 ---------------CYFSS-----LYCNLLVYEYMPNGNLWDALH------KGLVHLDWPTRHKIAFGVAQGLAYLHHG  652 (840)
Q Consensus       599 ---------------~~~~~-----~~~~~lV~e~~~~gsL~~~l~------~~~~~~~~~~~~~i~~~i~~~l~~LH~~  652 (840)
                                     .++..     ....+++|+++ +++|.+++.      .....+++..+..++.|+++||+|||+ 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-  229 (413)
T 3dzo_A          152 FPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH-  229 (413)
T ss_dssp             CCCEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cchhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence                           11111     12345666665 789999884      223357888999999999999999999 


Q ss_pred             CCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCcccc----------ccCCCCccccc
Q 003199          653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA----------YSSKATTKCDV  722 (840)
Q Consensus       653 ~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv  722 (840)
                        ++||||||||+|||++.++.+||+|||+++....      ......| +.|+|||++          .+..++.++||
T Consensus       230 --~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~Dv  300 (413)
T 3dzo_A          230 --YGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA------SAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDT  300 (413)
T ss_dssp             --TTEECSCCCGGGEEECTTCCEEECCGGGCEETTE------EECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHH
T ss_pred             --CCcccCCcccceEEEecCCeEEEEeccceeecCC------ccccCCC-CceeCchhhhccccccccccCcCCCchhhH
Confidence              9999999999999999999999999999876532      2344567 999999998          55568899999


Q ss_pred             hhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 003199          723 YSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE  802 (840)
Q Consensus       723 ~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~e  802 (840)
                      |||||++|||++|+.||........               ........  ..   ....+.+++.+||+.||++||++.+
T Consensus       301 wSlGvil~elltg~~Pf~~~~~~~~---------------~~~~~~~~--~~---~~~~~~~li~~~l~~dP~~Rpt~~~  360 (413)
T 3dzo_A          301 WTLGLAIYWIWCADLPNTDDAALGG---------------SEWIFRSC--KN---IPQPVRALLEGFLRYPKEDRLLPLQ  360 (413)
T ss_dssp             HHHHHHHHHHHHSSCCCCTTGGGSC---------------SGGGGSSC--CC---CCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCcchhhh---------------HHHHHhhc--cc---CCHHHHHHHHHHccCChhhCcCHHH
Confidence            9999999999999999975321100               01111100  11   1245777888999999999999777


Q ss_pred             HHH
Q 003199          803 VVQ  805 (840)
Q Consensus       803 vl~  805 (840)
                      +++
T Consensus       361 ~l~  363 (413)
T 3dzo_A          361 AME  363 (413)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            654

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=1.5e-34  Score=306.70  Aligned_cols=230  Identities=23%  Similarity=0.309  Sum_probs=177.2

Q ss_pred             HHHhcCcc-CeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHH-hccCCCCcceeeeE
Q 003199          524 ILEAMTEK-NKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL-GNIRHKNIVKLYCY  600 (840)
Q Consensus       524 ~~~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~  600 (840)
                      +..+|... +.||+|+||.||+|.. .+++.||||++..               ...+.+|++++ +...||||++++++
T Consensus        15 ~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---------------~~~~~~e~~~~~~~~~h~~i~~~~~~   79 (299)
T 3m2w_A           15 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------------CPKARREVELHWRASQCPHIVRIVDV   79 (299)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---------------SHHHHHHHHHHHHHTTSTTBCCEEEE
T ss_pred             cccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc---------------cHHHHHHHHHHHHhccCCCchhHHhh
Confidence            34566666 6799999999999965 5789999999832               12456788887 55589999999999


Q ss_pred             Eec----CccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---C
Q 003199          601 FSS----LYCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---N  672 (840)
Q Consensus       601 ~~~----~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~  672 (840)
                      +..    ....++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.   +
T Consensus        80 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~  156 (299)
T 3m2w_A           80 YENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPN  156 (299)
T ss_dssp             EEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTT
T ss_pred             hhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCC
Confidence            876    677899999999999999998753 368999999999999999999999   99999999999999998   7


Q ss_pred             CCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhh
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW  752 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~  752 (840)
                      +.+||+|||++....                         +..++.++|||||||++|||++|+.||...........  
T Consensus       157 ~~~kl~Dfg~a~~~~-------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~--  209 (299)
T 3m2w_A          157 AILKLTDFGFAKETT-------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG--  209 (299)
T ss_dssp             CCEEECCCTTCEECT-------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CC--
T ss_pred             CcEEEeccccccccc-------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHH--
Confidence            889999999985431                         23467899999999999999999999975322110000  


Q ss_pred             hhhhhccccchhhhcccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          753 VSIKVDTKEGIMEVLDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                                .............    ......+.+++.+|++.||++|||+.|++++-.
T Consensus       210 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~  259 (299)
T 3m2w_A          210 ----------MKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPW  259 (299)
T ss_dssp             ----------SCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred             ----------HHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcChh
Confidence                      0000000000000    122456778888999999999999999998743

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=7.2e-33  Score=298.12  Aligned_cols=289  Identities=20%  Similarity=0.281  Sum_probs=165.5

Q ss_pred             cccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeec
Q 003199           69 KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDM  148 (840)
Q Consensus        69 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L  148 (840)
                      +|+.++++++.++ .+|..+.  ++|++|+|++|.|++..+..|..+++|++|+|++|+ +.+..|..|..+++|++|+|
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEEC
Confidence            4455555555554 3343332  355566666666654444455556666666665554 33334555566666666666


Q ss_pred             cCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcc--cCCcCCCCCCCcceecccccccc
Q 003199          149 SVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTG--EVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      ++|+++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|++..  ..+..+..+++|+.|++++|.++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            666665 3333332  566666666666666555566666666666666666642  44555566666666666666655


Q ss_pred             ccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccC
Q 003199          227 GPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVG  306 (840)
Q Consensus       227 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  306 (840)
                      ..                         |..+.  ++|++|++++|++++..|..+..+++|+.|++++|++++..+..+.
T Consensus       185 ~l-------------------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          185 TI-------------------------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             SC-------------------------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             cC-------------------------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            21                         11111  4555566666666555555566666666666666666655555566


Q ss_pred             CCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccC------ccccchhcccCCccCC--Ccchhcc
Q 003199          307 NARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGN------LKKLNLLMLQSNKLNS--SIPNSLS  378 (840)
Q Consensus       307 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~  378 (840)
                      .+++|++|+|++|+++ .+|..+..+++|+.|+|++|+|++..+..|..      ...|+.|++++|++..  ..|..|.
T Consensus       238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~  316 (330)
T 1xku_A          238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  316 (330)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence            6666666666666666 55556666666666666666666555555532      2566677777777653  4566777


Q ss_pred             cccCCCEEECcCcc
Q 003199          379 SLKSLNVLDLSNNL  392 (840)
Q Consensus       379 ~l~~L~~L~l~~N~  392 (840)
                      .+.+++.++|++|+
T Consensus       317 ~~~~l~~l~L~~N~  330 (330)
T 1xku_A          317 CVYVRAAVQLGNYK  330 (330)
T ss_dssp             TCCCGGGEEC----
T ss_pred             cccceeEEEecccC
Confidence            77777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=9.8e-33  Score=297.25  Aligned_cols=294  Identities=19%  Similarity=0.210  Sum_probs=212.7

Q ss_pred             CCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCee
Q 003199           42 NLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQL  121 (840)
Q Consensus        42 ~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  121 (840)
                      +|+.+++++|   .+..+|...   .++|+.|+|++|.+.+..|..|.++++|++|+|++|++++..|..|..+++|++|
T Consensus        34 ~l~~l~~~~~---~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDL---GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSS---CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCC---CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            5677777777   455565543   2567778888888877777788888888888888888887778888888888888


Q ss_pred             ecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccccc--ccchhhhcCCCCCEEEccCC
Q 003199          122 ELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG--EISSVIANSTTLTMLSLYDN  199 (840)
Q Consensus       122 ~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N  199 (840)
                      +|++|+  ...+|..+.  ++|++|++++|.++...+..|..+++|++|++++|.++.  ..+..|..+ +|++|++++|
T Consensus       108 ~L~~n~--l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          108 YISKNH--LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             ECCSSC--CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             ECCCCc--CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence            888887  335665554  789999999999987767778889999999999998863  667777777 8999999999


Q ss_pred             cCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCc
Q 003199          200 SLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPE  279 (840)
Q Consensus       200 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  279 (840)
                      ++++ +|..+.  ++|+.|+|++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|+++ .+|.
T Consensus       183 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~  258 (332)
T 2ft3_A          183 KLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA  258 (332)
T ss_dssp             BCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred             CCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence            9985 555443  68899999999988777777777777777777777777766667777777777777777777 6666


Q ss_pred             cccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccC--CCCCCcccCcc
Q 003199          280 GILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLS--GPIPSGIGNLK  357 (840)
Q Consensus       280 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~  357 (840)
                      .+..+++|+.|++++|++++..+..|....-                  ......|+.|++++|++.  +..|..|..++
T Consensus       259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~------------------~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~  320 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGF------------------GVKRAYYNGISLFNNPVPYWEVQPATFRCVT  320 (332)
T ss_dssp             TGGGCTTCCEEECCSSCCCBCCTTSSSCSSC------------------CSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred             hhhcCccCCEEECCCCCCCccChhHcccccc------------------ccccccccceEeecCcccccccCcccccccc
Confidence            6777777777777777777665555543210                  001234566666666665  45556666677


Q ss_pred             ccchhcccCCc
Q 003199          358 KLNLLMLQSNK  368 (840)
Q Consensus       358 ~L~~L~Ls~N~  368 (840)
                      +|+.++|++|+
T Consensus       321 ~L~~l~l~~n~  331 (332)
T 2ft3_A          321 DRLAIQFGNYK  331 (332)
T ss_dssp             CSTTEEC----
T ss_pred             hhhhhhccccc
Confidence            77777776664

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=6e-35  Score=315.24  Aligned_cols=250  Identities=14%  Similarity=0.180  Sum_probs=184.2

Q ss_pred             HHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC---------CCCcc
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR---------HKNIV  595 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~---------h~niv  595 (840)
                      .++|+..+.||+|+||+||+|.. +|+.||||++........  ........+.+.+|+.+++.++         ||||+
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~--~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv   95 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLV--NGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFI   95 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCB--TTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBC
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCcccc--ccccchhHHHHHHHHHHHHHHHHhhccccccCCchh
Confidence            46788899999999999999987 689999999965532210  0011122456778888888875         66666


Q ss_pred             eeeeE-----------------Eec-------------CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHH
Q 003199          596 KLYCY-----------------FSS-------------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG  645 (840)
Q Consensus       596 ~l~~~-----------------~~~-------------~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~  645 (840)
                      ++.+.                 +.+             ....++||||+++|++.+.+.+  ..+++..+..++.||+.|
T Consensus        96 ~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A           96 GLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTAS  173 (336)
T ss_dssp             CEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHH
T ss_pred             hhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHH
Confidence            65554                 333             6788999999999987777754  368999999999999999


Q ss_pred             HHHHh-hcCCCCeEecCCCCCCEEEcCCC--------------------CCeeecccchhhhhccCCCCcceeccccccc
Q 003199          646 LAYLH-HGLLSPIIHRDIKSTNILLDVNY--------------------QPKVADFGIAKVLQARGGKDSTTTVIAGTYG  704 (840)
Q Consensus       646 l~~LH-~~~~~~ivH~Dlk~~Nill~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~  704 (840)
                      |+||| +   ++||||||||+|||++.++                    .+||+|||+|+....        ....||+.
T Consensus       174 L~~lH~~---~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~--------~~~~gt~~  242 (336)
T 2vuw_A          174 LAVAEAS---LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD--------GIVVFCDV  242 (336)
T ss_dssp             HHHHHHH---HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET--------TEEECCCC
T ss_pred             HHHHHHh---CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC--------CcEEEeec
Confidence            99999 8   8999999999999999887                    899999999986532        13479999


Q ss_pred             ccCccccccCCCCccccchhHHHH-HHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchhh-hcccc-cCCCcHHHHHH
Q 003199          705 YLAPEYAYSSKATTKCDVYSFGVV-LMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME-VLDKK-LSGSFRDEMIQ  781 (840)
Q Consensus       705 y~aPE~~~~~~~~~~~Dv~slG~i-l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~  781 (840)
                      |+|||++.+.. +.++||||+|++ .+++++|..||..        ..|........  ... ..... ..........+
T Consensus       243 y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~  311 (336)
T 2vuw_A          243 SMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSN--------VLWLHYLTDKM--LKQMTFKTKCNTPAMKQIKRK  311 (336)
T ss_dssp             TTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHH--------HHHHHHHHHHH--HHTCCCSSCCCSHHHHHHHHH
T ss_pred             ccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcc--------hhhhhHHHHhh--hhhhccCcccchhhhhhcCHH
Confidence            99999988766 899999998777 7788889999843        11211110000  000 00111 11123456678


Q ss_pred             HHHHHHHccCCCCCCCCCHHHHH-HH
Q 003199          782 VLRIAIRCTSKSPATRPTMNEVV-QL  806 (840)
Q Consensus       782 l~~l~~~cl~~dP~~Rps~~evl-~~  806 (840)
                      +.+++.+|++.|     |++|++ +|
T Consensus       312 ~~dli~~~L~~d-----sa~e~l~~H  332 (336)
T 2vuw_A          312 IQEFHRTMLNFS-----SATDLLCQH  332 (336)
T ss_dssp             HHHHHHHGGGSS-----SHHHHHHHC
T ss_pred             HHHHHHHHhccC-----CHHHHHhcC
Confidence            889999999976     999998 64

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=2.6e-32  Score=293.73  Aligned_cols=275  Identities=22%  Similarity=0.228  Sum_probs=170.7

Q ss_pred             ccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeee
Q 003199           68 TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLD  147 (840)
Q Consensus        68 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~  147 (840)
                      ++|+.|+|++|.+++..+..|+++++|++|+|++|.+++..|..|..+++|++|+|++|+  ...+|..+.  ++|++|+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ--LKELPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--CSBCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc--CCccChhhc--ccccEEE
Confidence            345555555555555555556666666666666666665556666666666666666665  224454443  5777777


Q ss_pred             ccCCcccccCCccccCCCCCcEEEeecccccc--ccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccc
Q 003199          148 MSVNHLSGKIPESILRLPKLRVLQLYNNSLSG--EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKL  225 (840)
Q Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l  225 (840)
                      +++|.+++..+..|.++++|++|++++|.+..  ..+..|.++++|++|++++|+++. +|..+.  ++|++|+|++|++
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l  204 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI  204 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence            77777776666667778888888888887753  556777788888888888888874 444433  6788888888887


Q ss_pred             cccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCccc
Q 003199          226 SGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTV  305 (840)
Q Consensus       226 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  305 (840)
                      ++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            7665555555555555555555555555555666666666666666666 555556666666666666666665555444


Q ss_pred             CCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCC--CCCCcccCccccchhcccCCc
Q 003199          306 GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSG--PIPSGIGNLKKLNLLMLQSNK  368 (840)
Q Consensus       306 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~  368 (840)
                      ....                  .......++.|++++|++..  ..|..|..+++++.++|++|+
T Consensus       284 ~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          284 CPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcc------------------cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            3220                  00112456666666666642  445566777777777777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1e-33  Score=301.50  Aligned_cols=248  Identities=29%  Similarity=0.459  Sum_probs=106.6

Q ss_pred             CCCeeecccCccccc--cCCcccCCCCCCCeeeccC-CcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCE
Q 003199          117 NLRQLELYYNQQLAG--TIPEELGNLTELTDLDMSV-NHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTM  193 (840)
Q Consensus       117 ~L~~L~L~~n~~~~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  193 (840)
                      +++.|+|++|. +.+  .+|..+..+++|++|+|++ |.+.+.+|..|..+++|++|+|++|++++..|..|.++++|++
T Consensus        51 ~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            34444444443 222  3444444444444444442 4444444444444444444444444444444444444444444


Q ss_pred             EEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCccccccc-CCceEEeeCce
Q 003199          194 LSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCK-NLLRFRVSNNH  272 (840)
Q Consensus       194 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~N~  272 (840)
                      |+|++|++++.+|..+..+++|++|+|++|++++                        .+|..+..++ +|++|++++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------------------~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG------------------------AIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE------------------------ECCGGGGCCCTTCCEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC------------------------cCCHHHhhhhhcCcEEECcCCe
Confidence            4444444444444444444444444444444433                        3333333333 44444444444


Q ss_pred             eeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCc
Q 003199          273 LEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSG  352 (840)
Q Consensus       273 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  352 (840)
                      +++.+|..+..++ |+.|++++|++++..+..|..+++|+.|+|++|++++..|. +..+++|++|+|++|++++.+|..
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~  263 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence            4444444444443 44444444444444444444444444444444444433222 333444444444444444444444


Q ss_pred             ccCccccchhcccCCccCCCcchhcccccCCCEEECcCcc
Q 003199          353 IGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNL  392 (840)
Q Consensus       353 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  392 (840)
                      +..+++|+.|+|++|++++.+|.. ..+++|+.|++++|+
T Consensus       264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            444444444444444444444333 334444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.6e-33  Score=295.87  Aligned_cols=253  Identities=30%  Similarity=0.457  Sum_probs=226.7

Q ss_pred             CCCcEEEccCCcccc--cCchhhhcCCCCCeeeccc-CccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCc
Q 003199           92 TSLTDLELTGNFITG--HIPPEIGLLKNLRQLELYY-NQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLR  168 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~L~~-n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (840)
                      .+++.|+|++|.+++  .+|..|..+++|++|+|++ |. +.+.+|..|..+++|++|+|++|.+++..|..|..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            589999999999998  8999999999999999995 75 6778999999999999999999999989999999999999


Q ss_pred             EEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCC-CcceeccccccccccCCccccCCCCchhhhcccc
Q 003199          169 VLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWS-PLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN  247 (840)
Q Consensus       169 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n  247 (840)
                      +|+|++|.+++..|..|..+++|++|+|++|++++.+|..+..++ +|+.|+|++|++++..|                 
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-----------------  191 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-----------------  191 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-----------------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC-----------------
Confidence            999999999999999999999999999999999988999999998 99999999999886544                 


Q ss_pred             cccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccch
Q 003199          248 MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPS  327 (840)
Q Consensus       248 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  327 (840)
                             ..+..++ |+.|++++|.+++..|..+..+++|+.|+|++|++++..+. +..+++|++|+|++|++++.+|.
T Consensus       192 -------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~  262 (313)
T 1ogq_A          192 -------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             -------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred             -------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence                   4455555 88888888888888888888888888888888888866665 77889999999999999989999


Q ss_pred             hhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCc-cCCC
Q 003199          328 EIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK-LNSS  372 (840)
Q Consensus       328 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~  372 (840)
                      .+..+++|+.|+|++|++++.+|.. +.+++|+.|++++|+ +.|.
T Consensus       263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            9999999999999999999888886 889999999999998 5543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=4.7e-36  Score=339.27  Aligned_cols=380  Identities=19%  Similarity=0.191  Sum_probs=235.1

Q ss_pred             CCCCEEecCCCcCcccCCcc-ccCCCCCCEEeCCCCCCCccCCCC----cccccccccccEEEecCccccccCCccc-cC
Q 003199           17 QNLRRLDLSNNLFTGQFPLS-VFNLTNLEVLSFNENPGFKLWKLP----ESSIFRLTKLRIMVLATCALHGQIPASI-GN   90 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~-~~~l~~L~~L~L~~N~~~~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~   90 (840)
                      ++|++|||++|.++...... +..+++|++|+|++|.   +....    ...+..+++|++|+|++|.+....+..+ ..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~---l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG---LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC---CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC---CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence            56788999999887544333 7778888888888884   33211    2346667888888888888765433332 23


Q ss_pred             CC----CCcEEEccCCcccc----cCchhhhcCCCCCeeecccCccccccCCcc-----cCCCCCCCeeeccCCcccccC
Q 003199           91 VT----SLTDLELTGNFITG----HIPPEIGLLKNLRQLELYYNQQLAGTIPEE-----LGNLTELTDLDMSVNHLSGKI  157 (840)
Q Consensus        91 l~----~L~~L~L~~n~i~~----~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~-----l~~l~~L~~L~L~~n~l~~~~  157 (840)
                      ++    +|++|+|++|.|++    .++..+..+++|++|+|++|. +.+..+..     ....++|++|+|++|.++...
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            44    68888888888874    347777788888888888876 33222221     223567888888888877533


Q ss_pred             ----CccccCCCCCcEEEeeccccccccchhhhc-----CCCCCEEEccCCcCccc----CCcCCCCCCCcceecccccc
Q 003199          158 ----PESILRLPKLRVLQLYNNSLSGEISSVIAN-----STTLTMLSLYDNSLTGE----VPQDLGQWSPLVVLDLSENK  224 (840)
Q Consensus       158 ----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L~~N~  224 (840)
                          +..+..+++|++|++++|.+++..+..+..     .++|++|+|++|.++..    ++..+..+++|+.|+|++|+
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence                445566778888888888876554444432     56788888888877743    34556667777888888777


Q ss_pred             ccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeecc----CCccccCCCcccEEeccCCccccc
Q 003199          225 LSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGS----IPEGILSLPHVSIIDLSYNSFSGP  300 (840)
Q Consensus       225 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~  300 (840)
                      +++.....++                   +..+..+++|++|++++|.++..    ++..+..+++|+.|++++|.+++.
T Consensus       239 l~~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          239 LGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             CHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             CChHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            7643211110                   11122355666666666666532    344555566666666666666543


Q ss_pred             CCcccCC-----CCCCceeecccceeeec----cchhhcccCcccEEEcCCCccCCCCCCcccC-----ccccchhcccC
Q 003199          301 IANTVGN-----ARNLSELFMQRNQISGF----IPSEIYRAISLVKIDLSDNLLSGPIPSGIGN-----LKKLNLLMLQS  366 (840)
Q Consensus       301 ~~~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~  366 (840)
                      .+..+..     .++|++|+|++|.+++.    ++..+..+++|+.|+|++|++++..+..+..     .++|+.|+|++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence            3332222     25677777777776654    3455555667777777777766543433332     45677777777


Q ss_pred             CccCC----CcchhcccccCCCEEECcCccccccCCchhhc------cCCCeEEccCCCCcCc
Q 003199          367 NKLNS----SIPNSLSSLKSLNVLDLSNNLLTGYIPESLCE------LLPNSINFSNNRLSGP  419 (840)
Q Consensus       367 N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~------~~~~~l~l~~N~l~~~  419 (840)
                      |++++    .+|..+..+++|++|||++|++++.-...+..      ..++.|++.++.+...
T Consensus       380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            77764    56666777777777777777776542222221      1345666666665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=1.3e-35  Score=335.70  Aligned_cols=356  Identities=18%  Similarity=0.164  Sum_probs=251.8

Q ss_pred             CCCCEEeCCCCCCCccCCCCcc-cccccccccEEEecCccccc----cCCccccCCCCCcEEEccCCcccccCchhh-hc
Q 003199           41 TNLEVLSFNENPGFKLWKLPES-SIFRLTKLRIMVLATCALHG----QIPASIGNVTSLTDLELTGNFITGHIPPEI-GL  114 (840)
Q Consensus        41 ~~L~~L~L~~N~~~~l~~l~~~-~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~-~~  114 (840)
                      ++|++|+|++|   .+...+.. .+..+++|++|+|++|.+..    .++..+..+++|++|+|++|.+++..+..+ ..
T Consensus         3 ~~l~~L~Ls~~---~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            3 LDIQSLDIQCE---ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEEESC---CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             ccceehhhhhc---ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence            46778888888   44443333 26677888888888888763    345667777888888888888775444333 33


Q ss_pred             CC----CCCeeecccCcccc---ccCCcccCCCCCCCeeeccCCcccccCCcccc-----CCCCCcEEEeecccccccc-
Q 003199          115 LK----NLRQLELYYNQQLA---GTIPEELGNLTELTDLDMSVNHLSGKIPESIL-----RLPKLRVLQLYNNSLSGEI-  181 (840)
Q Consensus       115 l~----~L~~L~L~~n~~~~---~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~-  181 (840)
                      ++    +|++|+|++|++..   ..++..+..+++|++|+|++|.++...+..+.     ..++|++|+|++|++++.. 
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            55    57777777776221   23466677777777777777777643333222     2456777777777776533 


Q ss_pred             ---chhhhcCCCCCEEEccCCcCcccCCcCCC-----CCCCcceeccccccccccCCccccCCCCchhhhcccccccccC
Q 003199          182 ---SSVIANSTTLTMLSLYDNSLTGEVPQDLG-----QWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVL  253 (840)
Q Consensus       182 ---~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  253 (840)
                         +..+..+++|++|+|++|.++...+..+.     ..++|++|+|++|.+++....                    .+
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------------------~l  219 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--------------------DL  219 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--------------------HH
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH--------------------HH
Confidence               44555667777777777776643333332     244666777776666521100                    24


Q ss_pred             CcccccccCCceEEeeCceeeccC-----CccccCCCcccEEeccCCccccc----CCcccCCCCCCceeecccceeeec
Q 003199          254 PDSLARCKNLLRFRVSNNHLEGSI-----PEGILSLPHVSIIDLSYNSFSGP----IANTVGNARNLSELFMQRNQISGF  324 (840)
Q Consensus       254 ~~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~  324 (840)
                      +..+..+++|++|++++|.+++..     +..+..+++|+.|++++|.+++.    ++..+..+++|++|+|++|.+++.
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            556778899999999999987532     22334689999999999999864    466677799999999999999876


Q ss_pred             cchhhccc-----CcccEEEcCCCccCCC----CCCcccCccccchhcccCCccCCCcchhccc-----ccCCCEEECcC
Q 003199          325 IPSEIYRA-----ISLVKIDLSDNLLSGP----IPSGIGNLKKLNLLMLQSNKLNSSIPNSLSS-----LKSLNVLDLSN  390 (840)
Q Consensus       325 ~p~~~~~l-----~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~l~~  390 (840)
                      .+..+...     ++|+.|+|++|.+++.    ++..+..+++|+.|+|++|++++..+..+..     .++|++|+|++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence            66555543     6999999999999865    4566777899999999999998766665543     67999999999


Q ss_pred             ccccc----cCCchhhcc-CCCeEEccCCCCcCc
Q 003199          391 NLLTG----YIPESLCEL-LPNSINFSNNRLSGP  419 (840)
Q Consensus       391 N~l~~----~~p~~~~~~-~~~~l~l~~N~l~~~  419 (840)
                      |.+++    .+|..+... .++.|++++|++++.
T Consensus       380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            99996    778877766 578999999999864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.2e-30  Score=274.37  Aligned_cols=259  Identities=20%  Similarity=0.203  Sum_probs=138.0

Q ss_pred             CCCeeeccCCcccccCCccccCCCCCcEEEeecccccccc--chhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceec
Q 003199          142 ELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEI--SSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLD  219 (840)
Q Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~  219 (840)
                      +|++|+|++|+++.+.+..|.++++|++|+|++|.++...  +..+..+++|++|+|++|.++ .++..+..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence            4555555555555333333455555555555555554221  344445555555555555555 2334455555555555


Q ss_pred             cccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccc
Q 003199          220 LSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG  299 (840)
Q Consensus       220 L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  299 (840)
                      +++|++++..+                       ...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus       108 l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A          108 FQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            55555543221                       0234444455555555555554445555555555555555555554


Q ss_pred             -cCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcc
Q 003199          300 -PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLS  378 (840)
Q Consensus       300 -~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  378 (840)
                       ..+..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+.
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence             3455555566666666666666655555666666666666666666655555566666666666666666666666666


Q ss_pred             ccc-CCCEEECcCccccccCCc-hhhcc--CCCeEEccCCCCcCcCCccc
Q 003199          379 SLK-SLNVLDLSNNLLTGYIPE-SLCEL--LPNSINFSNNRLSGPIPLSL  424 (840)
Q Consensus       379 ~l~-~L~~L~l~~N~l~~~~p~-~~~~~--~~~~l~l~~N~l~~~~p~~~  424 (840)
                      .++ +|++|+|++|++++..+. ++..+  ....+.+..+.+.|..|..+
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~  294 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK  294 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred             hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence            663 677777777777654321 11111  11233445556666666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=9.3e-31  Score=284.38  Aligned_cols=280  Identities=18%  Similarity=0.172  Sum_probs=164.5

Q ss_pred             CCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEE
Q 003199           91 VTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVL  170 (840)
Q Consensus        91 l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  170 (840)
                      ++.....++++|.++ .+|..+.  ++|++|++++|+ +.+..+..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            445556788888888 5665543  478888888876 444444467778888888888888877667777778888888


Q ss_pred             EeeccccccccchhhhcCCCCCEEEccCCcCcccCC-cCCCCCCCcceeccccc-cccccCCccccCCCCchhhhccccc
Q 003199          171 QLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVP-QDLGQWSPLVVLDLSEN-KLSGPLPAKVCSRGKLQYFLVLQNM  248 (840)
Q Consensus       171 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~n~  248 (840)
                      +|++|++++..+..|.++++|++|+|++|+++...+ ..+..+++|++|++++| .+++..+.                 
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----------------  168 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-----------------  168 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-----------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH-----------------
Confidence            888888876666667777888888888887774433 36777777777777777 35433333                 


Q ss_pred             ccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchh
Q 003199          249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSE  328 (840)
Q Consensus       249 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  328 (840)
                             .|..+++|++|++++|++++..|..+..+++|++|++++|+++......+..+++|+.|++++|++++..+..
T Consensus       169 -------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          169 -------DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             -------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             -------HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence                   3444444555555555554444444555555555555555544333333333444555555555444332222


Q ss_pred             hc---ccCcccEEEcCCCccCC----CCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          329 IY---RAISLVKIDLSDNLLSG----PIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       329 ~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      +.   ....++.++|++|.+++    .+|..+..+++|+.|+|++|+++...+..|..+++|++|+|++|++++..|
T Consensus       242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            21   12334445555554443    244445555566666666666653333334566666666666666665444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.5e-30  Score=278.93  Aligned_cols=205  Identities=18%  Similarity=0.172  Sum_probs=123.8

Q ss_pred             CCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCC
Q 003199           15 PMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSL   94 (840)
Q Consensus        15 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   94 (840)
                      .++.....++++|.++ .+|..+.  ++|++|+|++|   .+..++...|..+++|++|+|++|.+++..|..|+++++|
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n---~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNN---RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCC---cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            4455566777777777 5665554  46777777777   5556666667777777777777777776666667777777


Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCc--ccCCCCCCCeeeccCC-cccccCCccccCCCCCcEEE
Q 003199           95 TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPE--ELGNLTELTDLDMSVN-HLSGKIPESILRLPKLRVLQ  171 (840)
Q Consensus        95 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  171 (840)
                      ++|+|++|++++..+..|..+++|++|+|++|+  ...+|.  .+..+++|++|++++| .++...+..|.++++|++|+
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP--YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC--CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCC--CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            777777777764444446666666666666665  223333  4556666666666665 35544455555566666666


Q ss_pred             eeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccc
Q 003199          172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG  227 (840)
Q Consensus       172 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  227 (840)
                      +++|++++..+..|..+++|++|++++|+++......+..+++|+.|+|++|++++
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence            66666655555555555556666665555543222223334555555555555553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.3e-29  Score=266.49  Aligned_cols=247  Identities=23%  Similarity=0.266  Sum_probs=117.3

Q ss_pred             CEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccccc--CCccccCCCCCcEE
Q 003199           20 RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQ--IPASIGNVTSLTDL   97 (840)
Q Consensus        20 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L   97 (840)
                      +.++++++.++ .+|..+.  ++|++|+|++|   .+..++...|..+++|++|+|++|.+...  .+..+..+++|++|
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n---~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L   83 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESN---KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL   83 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSS---CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCC---ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence            46777777776 5555443  46677777766   45555555555555555555555555422  13344445555555


Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCccccccCC-cccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccc
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP-EELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS  176 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  176 (840)
                      +|++|.++ .+|..+..+++|++|++++|+ +.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             ECCSCSEE-EEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             ECCCCccc-cChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            55555555 334444445555555555444 111111 234444444444444444444444444444444444444444


Q ss_pred             ccc-ccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCc
Q 003199          177 LSG-EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD  255 (840)
Q Consensus       177 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  255 (840)
                      +++ ..+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++++                        ..+.
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~  217 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS------------------------LDTF  217 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB------------------------CCSG
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc------------------------cChh
Confidence            443 233344444444444444444443334444444444444444444432                        2222


Q ss_pred             ccccccCCceEEeeCceeeccCCccccCCC-cccEEeccCCccc
Q 003199          256 SLARCKNLLRFRVSNNHLEGSIPEGILSLP-HVSIIDLSYNSFS  298 (840)
Q Consensus       256 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~  298 (840)
                      .+..+++|++|++++|++++..|..+..++ +|+.|+|++|.++
T Consensus       218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            344444455555555555444444444442 4444444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.3e-28  Score=276.89  Aligned_cols=252  Identities=21%  Similarity=0.198  Sum_probs=189.3

Q ss_pred             CCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEc
Q 003199          117 NLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSL  196 (840)
Q Consensus       117 ~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  196 (840)
                      ....++.+++.  ...+|..+.  ++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|.++++|++|+|
T Consensus        55 ~~~~v~c~~~~--l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRG--LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSC--CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCC--cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            34566666554  344555443  46777777777777666667777777777777777777666667777777777777


Q ss_pred             cCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeC-ceeec
Q 003199          197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN-NHLEG  275 (840)
Q Consensus       197 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-N~l~~  275 (840)
                      ++|+++.+.+..|..+++|++|+|++|+++.                        ..+..|..+++|++|++++ |.+..
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~  186 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEY  186 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccc
Confidence            7777776555566667777777777776663                        3444566777777777777 45554


Q ss_pred             cCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccC
Q 003199          276 SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGN  355 (840)
Q Consensus       276 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  355 (840)
                      ..+..|..+++|+.|+|++|++++. + .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..
T Consensus       187 i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          187 ISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence            4445677788888888888888764 2 4778888999999999998888888999999999999999999888888999


Q ss_pred             ccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          356 LKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       356 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      +++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+...
T Consensus       265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            9999999999999998888888999999999999999986543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=275.39  Aligned_cols=251  Identities=19%  Similarity=0.195  Sum_probs=189.2

Q ss_pred             CCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEc
Q 003199          117 NLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSL  196 (840)
Q Consensus       117 ~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  196 (840)
                      ..+.++.+++.  ...+|..+.  ++++.|+|++|+++.+.+..|.++++|++|+|++|.|+++.+..|.++++|++|+|
T Consensus        44 ~~~~v~c~~~~--l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKN--LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCC--CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCC--cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            45667777665  445666553  57788888888888777777788888888888888887777777888888888888


Q ss_pred             cCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeC-ceeec
Q 003199          197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN-NHLEG  275 (840)
Q Consensus       197 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-N~l~~  275 (840)
                      ++|+++.+.+..|..+++|++|+|++|+++...                        +..|..+++|++|++++ |.+..
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------------------------~~~~~~l~~L~~L~l~~~~~l~~  175 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP------------------------SYAFNRIPSLRRLDLGELKRLSY  175 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC------------------------TTTTTTCTTCCEEECCCCTTCCE
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccC------------------------HHHhhhCcccCEeCCCCCCCcce
Confidence            888887666667777778888888877776433                        34556666677777766 34443


Q ss_pred             cCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccC
Q 003199          276 SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGN  355 (840)
Q Consensus       276 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  355 (840)
                      ..+..|..+++|+.|+|++|+++.. | .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|.+
T Consensus       176 i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          176 ISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             ECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             eCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence            3444666777777777777777743 2 3677788888888888888777888888888888888888888877888888


Q ss_pred             ccccchhcccCCccCCCcchhcccccCCCEEECcCccccccC
Q 003199          356 LKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYI  397 (840)
Q Consensus       356 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  397 (840)
                      +++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+..
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            888888888888888777778888889999999999887543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=9.2e-29  Score=260.07  Aligned_cols=256  Identities=21%  Similarity=0.212  Sum_probs=204.7

Q ss_pred             CCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccc
Q 003199          143 LTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSE  222 (840)
Q Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~  222 (840)
                      -++++.+++.++ .+|..+  .++|++|+|++|.+++..+..|..+++|++|+|++|+++++.+..|..+++|++|+|++
T Consensus        13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            367888888888 455443  46788888888888877777788888888888888888877777888888888888888


Q ss_pred             cc-ccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccC
Q 003199          223 NK-LSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI  301 (840)
Q Consensus       223 N~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  301 (840)
                      |+ ++.                        ..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++++..
T Consensus        90 n~~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  145 (285)
T 1ozn_A           90 NAQLRS------------------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP  145 (285)
T ss_dssp             CTTCCC------------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCccc------------------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence            86 653                        33556777788888888888888777778888888888888888888877


Q ss_pred             CcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhccccc
Q 003199          302 ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLK  381 (840)
Q Consensus       302 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  381 (840)
                      +..|+.+++|++|+|++|++++..+..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..+..+..++
T Consensus       146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence            77888899999999999999877777788899999999999999988889999999999999999999987778899999


Q ss_pred             CCCEEECcCccccccCCchhhccCCCeEEccCCCCcCcCCcccc
Q 003199          382 SLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLI  425 (840)
Q Consensus       382 ~L~~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~p~~~~  425 (840)
                      +|+.|+|++|++++..+.....-.++.+..+.|.+.|..|..+.
T Consensus       226 ~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          226 ALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             TCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             ccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhC
Confidence            99999999999997655421111223445667777777776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1e-28  Score=259.68  Aligned_cols=254  Identities=18%  Similarity=0.141  Sum_probs=139.0

Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeec
Q 003199           95 TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN  174 (840)
Q Consensus        95 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  174 (840)
                      +.++++++.++ .+|..+  .++|++|+|++|+ +.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56666666666 444332  3466666666665 3333334555666666666666666655555566666666666666


Q ss_pred             cc-cccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccC
Q 003199          175 NS-LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVL  253 (840)
Q Consensus       175 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  253 (840)
                      |. +....+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++                        ..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~  145 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA------------------------LP  145 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------CC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc------------------------cC
Confidence            64 554445555555666666666666555545555555555555555555543                        23


Q ss_pred             CcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccC
Q 003199          254 PDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI  333 (840)
Q Consensus       254 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  333 (840)
                      +..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..++
T Consensus       146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence            33455555666666666666544444455556666666666666555555555555666666666665554444555555


Q ss_pred             cccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhc
Q 003199          334 SLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSL  377 (840)
Q Consensus       334 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  377 (840)
                      +|+.|+|++|++....+. ......++.+..+.|.+....|..+
T Consensus       226 ~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          226 ALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             TCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGG
T ss_pred             ccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHh
Confidence            566666666555432211 1112334444455555555555444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.8e-31  Score=311.64  Aligned_cols=402  Identities=13%  Similarity=0.087  Sum_probs=233.3

Q ss_pred             CCCCCCCCEEecCCCcCc---ccCCcccc------------CCCCCCEEeCCCCCCCccCCCCcccccc-cc-cccEEEe
Q 003199           13 FSPMQNLRRLDLSNNLFT---GQFPLSVF------------NLTNLEVLSFNENPGFKLWKLPESSIFR-LT-KLRIMVL   75 (840)
Q Consensus        13 ~~~l~~L~~L~Ls~n~i~---~~~p~~~~------------~l~~L~~L~L~~N~~~~l~~l~~~~~~~-l~-~L~~L~L   75 (840)
                      +..+++|+.|+|++|...   +.+|..++            .+++|++|+|++|   .+.......+.. ++ +|+.|+|
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~---~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM---IVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC---BCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc---EecHHHHHHHHHhccccCcEEEC
Confidence            345677777777765321   22332222            6777777777777   343333333444 23 3777777


Q ss_pred             cCccc-cc-cCCccccCCCCCcEEEccCCccccc----CchhhhcCCCCCeeecccCccc---cccCCcccCCCCCCCee
Q 003199           76 ATCAL-HG-QIPASIGNVTSLTDLELTGNFITGH----IPPEIGLLKNLRQLELYYNQQL---AGTIPEELGNLTELTDL  146 (840)
Q Consensus        76 ~~n~l-~~-~~~~~~~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~~~---~~~~p~~l~~l~~L~~L  146 (840)
                      ++|.- .. .++....++++|++|+|++|.+++.    ++..+..+++|+.|+|++|...   ...++..+.++++|++|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            77762 11 1222234567777777777777654    3344566777777777777621   12334445567777777


Q ss_pred             eccCCcccccCCccccCCCCCcEEEeeccccc---cccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccc
Q 003199          147 DMSVNHLSGKIPESILRLPKLRVLQLYNNSLS---GEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN  223 (840)
Q Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N  223 (840)
                      +|++|.+.+ ++..+..+++|+.|+++.+...   ...+..+..+++|+.|+++++... .++..+..+++|++|+|++|
T Consensus       226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTC
T ss_pred             eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCC
Confidence            777777774 5566777777777777654322   122344556667777777765443 45555666677777777777


Q ss_pred             cccccCC-ccccCCCCchhhhcccccccccCCcccccccCCceEEeeC-----------ceeeccCC-ccccCCCcccEE
Q 003199          224 KLSGPLP-AKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN-----------NHLEGSIP-EGILSLPHVSII  290 (840)
Q Consensus       224 ~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-----------N~l~~~~~-~~~~~l~~L~~L  290 (840)
                      .+++... ..+..+++|+.|++..+...+.++..+..+++|++|++++           |.+++... ..+..+++|+.|
T Consensus       304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L  383 (592)
T 3ogk_B          304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM  383 (592)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred             cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence            7654333 2345667777777763333333344445667777777772           45543211 122346677777


Q ss_pred             eccCCcccccCCcccCC-CCCCceeecc----cceeeec-----cchhhcccCcccEEEcCCCc--cCCCCCCccc-Ccc
Q 003199          291 DLSYNSFSGPIANTVGN-ARNLSELFMQ----RNQISGF-----IPSEIYRAISLVKIDLSDNL--LSGPIPSGIG-NLK  357 (840)
Q Consensus       291 ~L~~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~  357 (840)
                      +++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|+.|+|++|.  +++..+..++ .++
T Consensus       384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~  463 (592)
T 3ogk_B          384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP  463 (592)
T ss_dssp             EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred             EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence            77777776655555544 6677777774    5566542     33345556777777776433  5444333333 366


Q ss_pred             ccchhcccCCccCC-CcchhcccccCCCEEECcCccccccCCchh-hcc-CCCeEEccCCCCcCc
Q 003199          358 KLNLLMLQSNKLNS-SIPNSLSSLKSLNVLDLSNNLLTGYIPESL-CEL-LPNSINFSNNRLSGP  419 (840)
Q Consensus       358 ~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~-~~~~l~l~~N~l~~~  419 (840)
                      +|+.|+|++|++++ .++..+..+++|++|+|++|++++.....+ ..+ .++.|++++|+++..
T Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            67777777777764 234445666777777777777664432222 222 456777777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.8e-28  Score=262.58  Aligned_cols=235  Identities=19%  Similarity=0.235  Sum_probs=176.1

Q ss_pred             CCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceec
Q 003199          140 LTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLD  219 (840)
Q Consensus       140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~  219 (840)
                      .++++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            356666666666666 45556666667777777777766 55566666777777777777766 5566666677777777


Q ss_pred             cccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccc
Q 003199          220 LSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG  299 (840)
Q Consensus       220 L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  299 (840)
                      |++|++.+.+|..+...               ..++.|..+++|++|++++|+++ .+|..+..+++|+.|+|++|++++
T Consensus       157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            77766665555544321               22345677888888888888888 778888888888888888888885


Q ss_pred             cCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhccc
Q 003199          300 PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSS  379 (840)
Q Consensus       300 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  379 (840)
                      . +..++.+++|++|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++++++|+.|+|++|++.+.+|..+..
T Consensus       221 l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          221 L-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             C-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             C-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence            4 445788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCCCEEECcCcccc
Q 003199          380 LKSLNVLDLSNNLLT  394 (840)
Q Consensus       380 l~~L~~L~l~~N~l~  394 (840)
                      +++|+.+++..|.+.
T Consensus       300 L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          300 LPANCIILVPPHLQA  314 (328)
T ss_dssp             SCTTCEEECCGGGSC
T ss_pred             ccCceEEeCCHHHHH
Confidence            888888888877765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=4.4e-28  Score=271.46  Aligned_cols=248  Identities=24%  Similarity=0.259  Sum_probs=216.2

Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEe
Q 003199           93 SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQL  172 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  172 (840)
                      ....++.+++.++ .+|..+.  ++++.|+|++|+ +....+..|.++++|++|+|++|.++.+.+..|.++++|++|+|
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4678999999999 6777664  789999999998 56666788999999999999999999888899999999999999


Q ss_pred             eccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccc-ccccCCccccCCCCchhhhcccccccc
Q 003199          173 YNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENK-LSGPLPAKVCSRGKLQYFLVLQNMFSG  251 (840)
Q Consensus       173 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~n~~~~  251 (840)
                      ++|+|+.+.+..|..+++|++|+|++|+++.+.+..|..+++|+.|+|++|+ +..                        
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~------------------------  175 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY------------------------  175 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------------------------
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce------------------------
Confidence            9999998888899999999999999999998888899999999999999854 432                        


Q ss_pred             cCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcc
Q 003199          252 VLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYR  331 (840)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  331 (840)
                      ..+..|..+++|++|++++|+++ .+| .+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..
T Consensus       176 i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence            23345777788888888888887 555 4778888999999999998888888888999999999999998888888888


Q ss_pred             cCcccEEEcCCCccCCCCCCcccCccccchhcccCCccC
Q 003199          332 AISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLN  370 (840)
Q Consensus       332 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  370 (840)
                      +++|+.|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            999999999999999777778888999999999999886

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=5.2e-28  Score=271.90  Aligned_cols=249  Identities=22%  Similarity=0.239  Sum_probs=218.7

Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEe
Q 003199           93 SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQL  172 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  172 (840)
                      ....++.+++.++ .+|..+.  ++|+.|+|++|+ +.+..+..|.++++|++|+|++|.|+++.+..|.++++|++|+|
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            4678999999999 6776554  799999999998 66677889999999999999999999888899999999999999


Q ss_pred             eccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccc-cccccCCccccCCCCchhhhcccccccc
Q 003199          173 YNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN-KLSGPLPAKVCSRGKLQYFLVLQNMFSG  251 (840)
Q Consensus       173 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~n~~~~  251 (840)
                      ++|+|+.+.+..|.++++|++|+|++|+++.+.+..|..+++|+.|+|++| .+..                        
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------------------------  186 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------------------------  186 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------------------------
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc------------------------
Confidence            999999888889999999999999999999888889999999999999985 4432                        


Q ss_pred             cCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcc
Q 003199          252 VLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYR  331 (840)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  331 (840)
                      ..+..|..+++|++|++++|+++ .+| .+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+..
T Consensus       187 i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          187 ISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence            23345777888888888888887 344 4778889999999999999888889999999999999999999888888999


Q ss_pred             cCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCC
Q 003199          332 AISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNS  371 (840)
Q Consensus       332 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  371 (840)
                      +++|+.|+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus       265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            9999999999999997777888899999999999998863

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.95  E-value=1.3e-29  Score=290.10  Aligned_cols=195  Identities=17%  Similarity=0.112  Sum_probs=138.0

Q ss_pred             eeeccCCcEEEEE-EeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEEecCccceEE
Q 003199          533 KVGQGGSGTVYKI-DLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLV  610 (840)
Q Consensus       533 ~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV  610 (840)
                      ..+.|+.|.++.+ .+..|+.||||++..................+.|.+|+++|+++ .|+||+++++++++....|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            3566777766664 34468999999996554333333444455678899999999999 699999999999999999999


Q ss_pred             EeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccC
Q 003199          611 YEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG  690 (840)
Q Consensus       611 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~  690 (840)
                      |||++|++|.+.+.... .++.   .+|+.||+.||+|+|+   +|||||||||+|||++++|.+||+|||+|+..... 
T Consensus       321 MEyv~G~~L~d~i~~~~-~l~~---~~I~~QIl~AL~ylH~---~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~-  392 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAGE-EIDR---EKILGSLLRSLAALEK---QGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD-  392 (569)
T ss_dssp             EECCCSEEHHHHHHTTC-CCCH---HHHHHHHHHHHHHHHH---TTCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred             EecCCCCcHHHHHHhCC-CCCH---HHHHHHHHHHHHHHHH---CCceeccCchHhEEECCCCCEEEeecccCeeCCCC-
Confidence            99999999999998765 4554   3589999999999999   99999999999999999999999999999876432 


Q ss_pred             CCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCC
Q 003199          691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKP  738 (840)
Q Consensus       691 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p  738 (840)
                        .......+||+.|||||++.+ .+..++|+||+|++++++.++..|
T Consensus       393 --~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          393 --CSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             ---CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred             --CccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence              223445789999999998865 567789999999998888766444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=7.1e-28  Score=257.93  Aligned_cols=225  Identities=23%  Similarity=0.295  Sum_probs=146.1

Q ss_pred             CCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEE
Q 003199          116 KNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLS  195 (840)
Q Consensus       116 ~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  195 (840)
                      ++++.|+|++|.  ...+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+.++++|++|+
T Consensus        81 ~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            444444444444  2234444444444555555555444 34444455555555555555554 3344455555555555


Q ss_pred             ccCCcCcccCCcCCC---------CCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceE
Q 003199          196 LYDNSLTGEVPQDLG---------QWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRF  266 (840)
Q Consensus       196 L~~N~l~~~~~~~l~---------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  266 (840)
                      |++|++.+.+|..+.         ++++|++|+|++|+++                         .+|..+..+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~lp~~l~~l~~L~~L  211 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------------------------SLPASIANLQNLKSL  211 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-------------------------CCCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-------------------------cchHhhcCCCCCCEE
Confidence            555444444444433         3566666666666655                         445566777777777


Q ss_pred             EeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccC
Q 003199          267 RVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLS  346 (840)
Q Consensus       267 ~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  346 (840)
                      ++++|+++ .+|..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.
T Consensus       212 ~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             EEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             EccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            77777777 45666777888888888888887777878888888888888888887788888888888888888888888


Q ss_pred             CCCCCcccCccccchhcccCCccC
Q 003199          347 GPIPSGIGNLKKLNLLMLQSNKLN  370 (840)
Q Consensus       347 ~~~p~~~~~l~~L~~L~Ls~N~l~  370 (840)
                      +.+|..++++++|+.+++..|.+.
T Consensus       291 ~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          291 SRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhccHHHhhccCceEEeCCHHHHH
Confidence            888888888888888888777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.8e-27  Score=272.26  Aligned_cols=266  Identities=27%  Similarity=0.327  Sum_probs=159.2

Q ss_pred             ccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeecc
Q 003199           70 LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMS  149 (840)
Q Consensus        70 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~  149 (840)
                      ++.|++++|.++ .+|..+.  ++|++|+|++|.|+ .+|.   .+++|++|+|++|+  ...+|.   .+++|++|+|+
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ--LTSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCC--CSCCCC---CCTTCCEEEEC
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCc--CCcCCC---CCCCCCEEECc
Confidence            444555555544 3344333  45555555555555 3333   34555555555554  223333   34555555555


Q ss_pred             CCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccC
Q 003199          150 VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPL  229 (840)
Q Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  229 (840)
                      +|++++ +|.   .+++|+.|++++|+|+.++.    .+++|++|+|++|++++ +|.   .+.+|+.|++++|++++  
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~--  175 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS--  175 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC--
Confidence            555553 222   34555555555555554322    13556666666665553 222   22445555666555552  


Q ss_pred             CccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCC
Q 003199          230 PAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR  309 (840)
Q Consensus       230 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  309 (840)
                                             +|   ..+++|+.|++++|+++ .+|..   +++|+.|++++|.++....    .++
T Consensus       176 -----------------------l~---~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~l~~----~~~  221 (622)
T 3g06_A          176 -----------------------LP---MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPA----LPS  221 (622)
T ss_dssp             -----------------------CC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCC----CCT
T ss_pred             -----------------------Cc---ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCcccccCC----CCC
Confidence                                   22   22355666666666666 23332   3566777777777764332    246


Q ss_pred             CCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECc
Q 003199          310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLS  389 (840)
Q Consensus       310 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  389 (840)
                      +|+.|+|++|+|++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..|..+++|+.|+|+
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            77778888887774 44   34577888888888888 4555   5678889999999998 678888999999999999


Q ss_pred             CccccccCCchhhcc
Q 003199          390 NNLLTGYIPESLCEL  404 (840)
Q Consensus       390 ~N~l~~~~p~~~~~~  404 (840)
                      +|++++.+|..+..+
T Consensus       293 ~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          293 GNPLSERTLQALREI  307 (622)
T ss_dssp             SCCCCHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHhc
Confidence            999998888877765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.9e-27  Score=272.23  Aligned_cols=268  Identities=24%  Similarity=0.327  Sum_probs=155.2

Q ss_pred             CCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEE
Q 003199           18 NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDL   97 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   97 (840)
                      ++++|++++|.|+ .+|..+.  ++|+.|+|++|   .+..+|.    .+++|++|+|++|.+++ +|.   .+++|++|
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N---~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L  106 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN---NLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLEL  106 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSC---CCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCC---CCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEE
Confidence            4777777777777 6666554  67777777777   4444444    34566666666666552 333   44556666


Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccc
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL  177 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  177 (840)
                      +|++|+|++ +|.   .+++|+.|++++|                         +++. +|..   +++|++|+|++|++
T Consensus       107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N-------------------------~l~~-lp~~---l~~L~~L~Ls~N~l  153 (622)
T 3g06_A          107 SIFSNPLTH-LPA---LPSGLCKLWIFGN-------------------------QLTS-LPVL---PPGLQELSVSDNQL  153 (622)
T ss_dssp             EECSCCCCC-CCC---CCTTCCEEECCSS-------------------------CCSC-CCCC---CTTCCEEECCSSCC
T ss_pred             ECcCCcCCC-CCC---CCCCcCEEECCCC-------------------------CCCc-CCCC---CCCCCEEECcCCcC
Confidence            666665552 222   3444555555544                         4442 2221   24455555555555


Q ss_pred             ccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCccc
Q 003199          178 SGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSL  257 (840)
Q Consensus       178 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  257 (840)
                      +++. .   .+++|+.|++++|+++. +|   ..+++|+.|+|++|++++.                         |.  
T Consensus       154 ~~l~-~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-------------------------~~--  198 (622)
T 3g06_A          154 ASLP-A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-------------------------PT--  198 (622)
T ss_dssp             SCCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-------------------------CC--
T ss_pred             CCcC-C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-------------------------CC--
Confidence            4322 1   23455555555555553 23   2345555666666655521                         11  


Q ss_pred             ccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccE
Q 003199          258 ARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVK  337 (840)
Q Consensus       258 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  337 (840)
                       .+++|+.|++++|.++ .+|..   +++|+.|+|++|++++..    ..+++|+.|+|++|+|++ +|.   .+++|+.
T Consensus       199 -~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~  265 (622)
T 3g06_A          199 -LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS-LPM---LPSGLLS  265 (622)
T ss_dssp             -CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred             -ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc-CCc---ccccCcE
Confidence             1134555555555555 33322   355666666666666532    335667777777777763 443   4567888


Q ss_pred             EEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhccccc
Q 003199          338 IDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLK  381 (840)
Q Consensus       338 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  381 (840)
                      |+|++|+|+ .+|..+.++++|+.|+|++|++++..|..+..++
T Consensus       266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            888888887 6677788888888888888888887777777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=9.3e-30  Score=271.09  Aligned_cols=245  Identities=20%  Similarity=0.215  Sum_probs=116.0

Q ss_pred             CCCCCeeeccCCcccccCCccccCCCCCcEEEeecccccc-ccchhhh-------cCCCCCEEEccCCcCcccCCcCC--
Q 003199          140 LTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG-EISSVIA-------NSTTLTMLSLYDNSLTGEVPQDL--  209 (840)
Q Consensus       140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~l--  209 (840)
                      .++|+.|++++|.+  .+|..+...  |+.|+|++|.+.. ..+..+.       ++++|++|+|++|++++..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            34455555555555  233333322  5555555555521 2233222       45566666666666655555544  


Q ss_pred             CCCCCcceeccccccccccCCccccCC-----CCchhhhcccccccccCCcccccccCCceEEeeCceeecc--CCccc-
Q 003199          210 GQWSPLVVLDLSENKLSGPLPAKVCSR-----GKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGS--IPEGI-  281 (840)
Q Consensus       210 ~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~-  281 (840)
                      ..+++|++|+|++|++++. |..+..+     ++|++|++++|.+.+..+..|+.+++|++|++++|++.+.  .+..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            5566666666666666543 3333332     3333333333333333334444455555555555554332  11122 


Q ss_pred             -cCCCcccEEeccCCcccc---cCCcccCCCCCCceeecccceeeeccc-hhhcccCcccEEEcCCCccCCCCCCcccCc
Q 003199          282 -LSLPHVSIIDLSYNSFSG---PIANTVGNARNLSELFMQRNQISGFIP-SEIYRAISLVKIDLSDNLLSGPIPSGIGNL  356 (840)
Q Consensus       282 -~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  356 (840)
                       ..+++|++|+|++|++++   .....+..+++|++|+|++|++++..| ..+..+++|+.|+|++|+|+ .+|..+.  
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence             445555555555555542   111223344555555555555554443 22333455555555555555 4444443  


Q ss_pred             cccchhcccCCccCCCcchhcccccCCCEEECcCcccc
Q 003199          357 KKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT  394 (840)
Q Consensus       357 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  394 (840)
                      ++|+.|+|++|+|++. |. +..+++|++|+|++|+|+
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            4555555555555543 33 555555555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.5e-30  Score=303.89  Aligned_cols=383  Identities=13%  Similarity=0.052  Sum_probs=278.5

Q ss_pred             CCCCCCEEecCCCcCcccCCccccCC--CCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccccc----CCccc
Q 003199           15 PMQNLRRLDLSNNLFTGQFPLSVFNL--TNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQ----IPASI   88 (840)
Q Consensus        15 ~l~~L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~   88 (840)
                      .+++|++|+|++|.+++..+..+..+  .+|++|+|++|.......+ .....++++|++|+|++|.+.+.    ++..+
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHH-HHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            68899999999998887777777664  4499999998841111011 11234788999999999988654    33345


Q ss_pred             cCCCCCcEEEccCCccc----ccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCccc---ccCCccc
Q 003199           89 GNVTSLTDLELTGNFIT----GHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLS---GKIPESI  161 (840)
Q Consensus        89 ~~l~~L~~L~L~~n~i~----~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~---~~~~~~~  161 (840)
                      ..+++|++|+|++|.++    +.++..+..+++|+.|+|++|.  ...+|..+..+++|++|+++.+...   ...+..+
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE--ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB--GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc--HHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            67889999999999987    3455667788999999999987  3346778888999999999864433   2334567


Q ss_pred             cCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCC-cCCCCCCCcceeccccccccccCCccccCCCCch
Q 003199          162 LRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVP-QDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ  240 (840)
Q Consensus       162 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  240 (840)
                      ..+++|+.|+++++... ..+..+..+++|++|+|++|.++.... ..+..+++|+.|+++++-..+.++..+..+++|+
T Consensus       267 ~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred             hccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence            77889999999887544 566778888999999999999764333 3357789999999994433333344446678899


Q ss_pred             hhhccc-----------ccccccC-CcccccccCCceEEeeCceeeccCCccccC-CCcccEEecc----CCccccc---
Q 003199          241 YFLVLQ-----------NMFSGVL-PDSLARCKNLLRFRVSNNHLEGSIPEGILS-LPHVSIIDLS----YNSFSGP---  300 (840)
Q Consensus       241 ~L~l~~-----------n~~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~---  300 (840)
                      .|++.+           |.++... +..+..+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.   
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            999983           5555432 233456889999999989888766666665 8889999996    6777764   


Q ss_pred             --CCcccCCCCCCceeecccc--eeeeccchhhcc-cCcccEEEcCCCccCC-CCCCcccCccccchhcccCCccCCC-c
Q 003199          301 --IANTVGNARNLSELFMQRN--QISGFIPSEIYR-AISLVKIDLSDNLLSG-PIPSGIGNLKKLNLLMLQSNKLNSS-I  373 (840)
Q Consensus       301 --~~~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~  373 (840)
                        .+..+..+++|+.|+|++|  .+++..+..+.. +++|+.|+|++|++++ .++..+..+++|+.|+|++|++++. +
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  505 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI  505 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence              2334667889999999743  466655555554 7889999999999875 3444557789999999999998654 3


Q ss_pred             chhcccccCCCEEECcCccccccCCchh
Q 003199          374 PNSLSSLKSLNVLDLSNNLLTGYIPESL  401 (840)
Q Consensus       374 ~~~~~~l~~L~~L~l~~N~l~~~~p~~~  401 (840)
                      +..+..+++|++|+|++|++++.-...+
T Consensus       506 ~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          506 AAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             HHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             HHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence            4445678999999999999886533333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=4e-29  Score=266.85  Aligned_cols=268  Identities=20%  Similarity=0.207  Sum_probs=147.3

Q ss_pred             ccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeecc
Q 003199           70 LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMS  149 (840)
Q Consensus        70 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~  149 (840)
                      ++.++++.+.+.......+..+++|++|+|++|++++..|..|..+++|++|+|++|+ +.+..+  +..+++|++|+|+
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh--hhhcCCCCEEECc
Confidence            4555555555554444444555566666666666665555566666666666666655 222221  5555555555555


Q ss_pred             CCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccC
Q 003199          150 VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPL  229 (840)
Q Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  229 (840)
                      +|++++..     ..++|++|++++|++++..+..   +++|++|++++|++++..+..+..++                
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~----------------  144 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRS----------------  144 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGS----------------
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccC----------------
Confidence            55555321     1244555555555544333222   23344444444444433333333344                


Q ss_pred             CccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCcccc-CCCcccEEeccCCcccccCCcccCCC
Q 003199          230 PAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSFSGPIANTVGNA  308 (840)
Q Consensus       230 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l  308 (840)
                                                      +|++|++++|.+++..+..+. .+++|+.|+|++|++++...  ...+
T Consensus       145 --------------------------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l  190 (317)
T 3o53_A          145 --------------------------------RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVF  190 (317)
T ss_dssp             --------------------------------SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCC
T ss_pred             --------------------------------CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--cccc
Confidence                                            444444444444433333332 34555555555555554322  2235


Q ss_pred             CCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccC-CCcchhcccccCCCEEE
Q 003199          309 RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLN-SSIPNSLSSLKSLNVLD  387 (840)
Q Consensus       309 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~  387 (840)
                      ++|++|+|++|++++. |..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ +.+|..+..+++|+.|+
T Consensus       191 ~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          191 AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred             ccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence            6666666777766643 334667777777777777777 45666777777777777777776 56677777777788777


Q ss_pred             Cc-CccccccCCch
Q 003199          388 LS-NNLLTGYIPES  400 (840)
Q Consensus       388 l~-~N~l~~~~p~~  400 (840)
                      ++ .+.++|..|..
T Consensus       269 l~~~~~l~~~~~~~  282 (317)
T 3o53_A          269 KQTVKKLTGQNEEE  282 (317)
T ss_dssp             HHHHHHHHSSSSCC
T ss_pred             CCCchhccCCchhc
Confidence            77 44666655543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=5.5e-29  Score=265.76  Aligned_cols=193  Identities=18%  Similarity=0.194  Sum_probs=98.7

Q ss_pred             CCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEE
Q 003199           18 NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDL   97 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   97 (840)
                      .++.++++++.+....+..+..+++|++|+|++|   .+..+++..|..+++|++|+|++|.+.+..+  +..+++|++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN---PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS---CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCC---ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            3555666666666444444555566666666666   4555555556666666666666666654433  5566666666


Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccc
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL  177 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  177 (840)
                      +|++|++++..     ..++|++|++++|+ +.+..+   ..+++|++|++++|++++..+..+..+++|++|+|++|.+
T Consensus        86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           86 DLNNNYVQELL-----VGPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             ECCSSEEEEEE-----ECTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             ECcCCcccccc-----CCCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            66666665321     22555555555554 222111   1234455555555555544444444555555555555555


Q ss_pred             ccccchhh-hcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccc
Q 003199          178 SGEISSVI-ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       178 ~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      ++..+..+ ..+++|++|+|++|++++. + ....+++|++|+|++|+++
T Consensus       157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC
T ss_pred             CcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC
Confidence            54444333 2445555555555555432 1 1122444444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=6.2e-29  Score=264.72  Aligned_cols=251  Identities=21%  Similarity=0.217  Sum_probs=164.0

Q ss_pred             cCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccC-------CCCCCCeeeccCCcccccCCccc
Q 003199           89 GNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELG-------NLTELTDLDMSVNHLSGKIPESI  161 (840)
Q Consensus        89 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~~~~~  161 (840)
                      +..++|+.|++++|.+  .+|..+...  |+.|+|++|++....+|..+.       ++++|++|+|++|.+++..|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3344555556666665  344444433  666666666532334444443       56777777777777776666655


Q ss_pred             --cCCCCCcEEEeeccccccccchhhhcC-----CCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccC--Ccc
Q 003199          162 --LRLPKLRVLQLYNNSLSGEISSVIANS-----TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPL--PAK  232 (840)
Q Consensus       162 --~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~  232 (840)
                        ..+++|++|+|++|++++. |..+..+     ++|++|+|++|++++..+..|..+++|++|+|++|++.+..  +..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              6777777777777777765 5666665     77777777777777766677777777777777777765321  111


Q ss_pred             ccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeec---cCCccccCCCcccEEeccCCcccccCC-cccCCC
Q 003199          233 VCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEG---SIPEGILSLPHVSIIDLSYNSFSGPIA-NTVGNA  308 (840)
Q Consensus       233 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l  308 (840)
                      +                      .+..+++|++|++++|++++   .....+..+++|+.|+|++|++++..+ ..+..+
T Consensus       195 ~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          195 L----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             S----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             H----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            1                      12455666666666666652   111233456777777777777776553 445567


Q ss_pred             CCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCC
Q 003199          309 RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNS  371 (840)
Q Consensus       309 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  371 (840)
                      ++|+.|+|++|+|+ .+|..+.  ++|+.|+|++|+|++. |. +..+++|+.|+|++|++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            77888888888887 5666665  7888888888888865 55 7788888888888888874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=7e-28  Score=272.14  Aligned_cols=233  Identities=18%  Similarity=0.173  Sum_probs=110.3

Q ss_pred             CCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccc
Q 003199          142 ELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLS  221 (840)
Q Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~  221 (840)
                      +|++|+|++|.+++..|..|..+++|++|+|++|.+++..+  |..+++|++|+|++|.|++..+     .++|+.|+|+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            55555555555555445555555555555555555554433  5555555555555555553221     1455555555


Q ss_pred             cccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCcccc-CCCcccEEeccCCccccc
Q 003199          222 ENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSFSGP  300 (840)
Q Consensus       222 ~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~  300 (840)
                      +|.+++..+..   +++|+.|++++|.+.+..|..|..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus       108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            55555332211   12233333333333333344444445555555555555544444443 345555555555555443


Q ss_pred             CCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccC-CCcchhccc
Q 003199          301 IANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLN-SSIPNSLSS  379 (840)
Q Consensus       301 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~  379 (840)
                      .+  +..+++|+.|+|++|+|++..| .+..+++|+.|+|++|.|++ +|..++.+++|+.|+|++|++. +.+|..+..
T Consensus       185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence            22  1224455555555555543222 24444455555555555542 3444444444555555555444 333444444


Q ss_pred             ccCCCEEEC
Q 003199          380 LKSLNVLDL  388 (840)
Q Consensus       380 l~~L~~L~l  388 (840)
                      ++.|+.|++
T Consensus       261 l~~L~~l~~  269 (487)
T 3oja_A          261 NQRVQTVAK  269 (487)
T ss_dssp             CHHHHHHHH
T ss_pred             CCCCcEEec
Confidence            444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=5.8e-27  Score=264.64  Aligned_cols=235  Identities=21%  Similarity=0.237  Sum_probs=157.3

Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEe
Q 003199           93 SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQL  172 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  172 (840)
                      +|++|+|++|.+++..|..|..+++|++|+|++|. +.+..|  +..+++|++|+|++|.|++..+     .++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            56666666666665555566666666666666665 222222  5555566666666665553221     245555555


Q ss_pred             eccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhccccccccc
Q 003199          173 YNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV  252 (840)
Q Consensus       173 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  252 (840)
                      ++|.|++..+.   .+++|++|+|++|.+++..|..+..+++|+.|+|++|.+                        .+.
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l------------------------~~~  159 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI------------------------DTV  159 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC------------------------CEE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC------------------------CCc
Confidence            55555544332   234455555555555544444455555555555555554                        445


Q ss_pred             CCcccc-cccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcc
Q 003199          253 LPDSLA-RCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYR  331 (840)
Q Consensus       253 ~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  331 (840)
                      .|..+. .+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++.++. +..+++|+.|+|++|.|++ +|..+..
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~  235 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRF  235 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred             ChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhcc
Confidence            555554 67889999999999885532  34588999999999999976555 8889999999999999995 6777888


Q ss_pred             cCcccEEEcCCCccC-CCCCCcccCccccchhcccC
Q 003199          332 AISLVKIDLSDNLLS-GPIPSGIGNLKKLNLLMLQS  366 (840)
Q Consensus       332 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~  366 (840)
                      +++|+.|++++|.+. +.+|..+..++.|+.++++.
T Consensus       236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~  271 (487)
T 3oja_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (487)
T ss_dssp             CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence            999999999999998 67778888999999999863

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1e-25  Score=235.50  Aligned_cols=208  Identities=20%  Similarity=0.150  Sum_probs=125.7

Q ss_pred             CCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcc
Q 003199          166 KLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL  245 (840)
Q Consensus       166 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  245 (840)
                      +|++|++++|++++..+..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++.                 
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------   91 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-----------------   91 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-----------------
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-----------------
Confidence            344444444444444444444444444444444444444444444444444444444444422                 


Q ss_pred             cccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCccccc-CCcccCCCCCCceeecccceeeec
Q 003199          246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP-IANTVGNARNLSELFMQRNQISGF  324 (840)
Q Consensus       246 ~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~  324 (840)
                             .+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++. .|..|+.+++|++|+|++|++++.
T Consensus        92 -------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           92 -------ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             -------CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             -------ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence                   222333444444444444444433333455555666666666666543 355666666777777777777666


Q ss_pred             cchhhcccCccc----EEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          325 IPSEIYRAISLV----KIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       325 ~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      .+..+..+.+|+    .|++++|++++..+..+. ..+|+.|+|++|++++..+..|..+++|+.|+|++|++++..|
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            666666666665    788899988865555554 4589999999999987777778899999999999999997665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.6e-28  Score=286.85  Aligned_cols=397  Identities=17%  Similarity=0.185  Sum_probs=219.4

Q ss_pred             CCCCCCCCEEecCCCcCcc---cCC------------ccccCCCCCCEEeCCCCCCCccCCCCccccc-ccccccEEEec
Q 003199           13 FSPMQNLRRLDLSNNLFTG---QFP------------LSVFNLTNLEVLSFNENPGFKLWKLPESSIF-RLTKLRIMVLA   76 (840)
Q Consensus        13 ~~~l~~L~~L~Ls~n~i~~---~~p------------~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~-~l~~L~~L~L~   76 (840)
                      +..+++|+.|+|++|....   ..|            ..+..+++|++|+|++|   .+.......+. .+++|+.|+|+
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~---~~~~~~~~~l~~~~~~L~~L~L~  138 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM---VVTDDCLELIAKSFKNFKVLVLS  138 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC---BCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc---EEcHHHHHHHHHhCCCCcEEeCC
Confidence            3456777777777765221   111            12345677777777777   33333333333 56777777777


Q ss_pred             Cc-ccccc-CCccccCCCCCcEEEccCCcccccCchhhh----cCCCCCeeecccCc--cccccCCcccCCCCCCCeeec
Q 003199           77 TC-ALHGQ-IPASIGNVTSLTDLELTGNFITGHIPPEIG----LLKNLRQLELYYNQ--QLAGTIPEELGNLTELTDLDM  148 (840)
Q Consensus        77 ~n-~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~----~l~~L~~L~L~~n~--~~~~~~p~~l~~l~~L~~L~L  148 (840)
                      +| .+... ++..+.++++|++|+|++|.+++..+..+.    .+++|+.|++++|.  .....++..+..+++|++|+|
T Consensus       139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L  218 (594)
T 2p1m_B          139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL  218 (594)
T ss_dssp             SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence            77 44322 333444677777777777777654444443    45577777777764  111111222334577777777


Q ss_pred             cCC-cccccCCccccCCCCCcEEEeec-------cccccccchhhhcCCCCCEE-EccCCcCcccCCcCCCCCCCcceec
Q 003199          149 SVN-HLSGKIPESILRLPKLRVLQLYN-------NSLSGEISSVIANSTTLTML-SLYDNSLTGEVPQDLGQWSPLVVLD  219 (840)
Q Consensus       149 ~~n-~l~~~~~~~~~~l~~L~~L~L~~-------N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~l~~l~~L~~L~  219 (840)
                      ++| .+.+ ++..+..+++|+.|+++.       |.+.+. +..+.++++|+.| .+.+.... .++..+..+++|+.|+
T Consensus       219 ~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~  295 (594)
T 2p1m_B          219 NRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLN  295 (594)
T ss_dssp             CTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEE
T ss_pred             CCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEE
Confidence            777 4443 556666677777777433       334432 2355666666666 33332221 2333333566777777


Q ss_pred             cccccccccCCc-cccCCCCchhhhcccccccccCCcccccccCCceEEeeC---------ceeeccCCcccc-CCCccc
Q 003199          220 LSENKLSGPLPA-KVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN---------NHLEGSIPEGIL-SLPHVS  288 (840)
Q Consensus       220 L~~N~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~---------N~l~~~~~~~~~-~l~~L~  288 (840)
                      |++|.+++.... .+..+++|+.|.+.+|.....++.....+++|++|++.+         +.+++.....+. .+++|+
T Consensus       296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~  375 (594)
T 2p1m_B          296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE  375 (594)
T ss_dssp             CTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCC
T ss_pred             ccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHH
Confidence            777776543222 234566777777776622112222233467777777733         344322222222 356777


Q ss_pred             EEeccCCcccccCCcccC-CCCCCceeecc--c----ceeee-----ccchhhcccCcccEEEcCCCccCCCCCCcccC-
Q 003199          289 IIDLSYNSFSGPIANTVG-NARNLSELFMQ--R----NQISG-----FIPSEIYRAISLVKIDLSDNLLSGPIPSGIGN-  355 (840)
Q Consensus       289 ~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-  355 (840)
                      .|+++.|.+++.....+. .+++|+.|+|+  +    |.+++     .++..+..+++|+.|+|++ .+++..+..++. 
T Consensus       376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~  454 (594)
T 2p1m_B          376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY  454 (594)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred             HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence            777777776654444443 46677777777  3    44441     1122245566777777766 555444444443 


Q ss_pred             ccccchhcccCCccCCCcchhc-ccccCCCEEECcCccccccCCchhhc-c-CCCeEEccCCCC
Q 003199          356 LKKLNLLMLQSNKLNSSIPNSL-SSLKSLNVLDLSNNLLTGYIPESLCE-L-LPNSINFSNNRL  416 (840)
Q Consensus       356 l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~-~-~~~~l~l~~N~l  416 (840)
                      +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++..+..+.. + .++.|++++|++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            6667777777777765444444 55677777777777775443332222 2 456777777766

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=4.5e-25  Score=230.70  Aligned_cols=205  Identities=22%  Similarity=0.255  Sum_probs=115.9

Q ss_pred             CCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEE
Q 003199           18 NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDL   97 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   97 (840)
                      +|++|+|++|.|++..+..|.++++|++|+|++|   .+..++...|..+++|++|+|++|.+++..+..|.++++|++|
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCC---cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            4666666666666555555666666666666666   4445555556666666666666666655555556666666666


Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCc----EEEee
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLR----VLQLY  173 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~  173 (840)
                      ++++|.+++..+..+..+++|++|++++|++....+|..+..+++|++|+|++|++++..+..|..+++|+    .|+++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            66666666444445556666666666665522223455555566666666666666554444554444444    55666


Q ss_pred             ccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccc
Q 003199          174 NNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       174 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      +|.+++..+..+.. .+|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus       186 ~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          186 LNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            66665444444333 25666666666665444444555566666666666555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=5.8e-28  Score=282.18  Aligned_cols=378  Identities=14%  Similarity=0.086  Sum_probs=277.8

Q ss_pred             CCCCCCEEecCCCcCcccCCcccc-CCCCCCEEeCCCCCCCccCCC-CcccccccccccEEEecCccccccCCccc----
Q 003199           15 PMQNLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKL-PESSIFRLTKLRIMVLATCALHGQIPASI----   88 (840)
Q Consensus        15 ~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~L~~N~~~~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----   88 (840)
                      .+++|++|+|++|.+++..+..+. .+++|++|+|++|.  .+... ....+.++++|++|+|++|.+++..+..+    
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE--GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE--EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC--CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            578999999999999987777776 69999999999993  22221 12334579999999999999876544433    


Q ss_pred             cCCCCCcEEEccCCc--ccc-cCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCC-------cccccCC
Q 003199           89 GNVTSLTDLELTGNF--ITG-HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVN-------HLSGKIP  158 (840)
Q Consensus        89 ~~l~~L~~L~L~~n~--i~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n-------~l~~~~~  158 (840)
                      ..+++|++|+|++|.  +.. .++..+..+++|++|+|++|.... .++..+..+++|++|+++.+       .+.+ ++
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~  258 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LS  258 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHH-HH
Confidence            467799999999997  331 123334567999999999985333 37778889999999995544       4553 34


Q ss_pred             ccccCCCCCcEE-EeeccccccccchhhhcCCCCCEEEccCCcCcccCC-cCCCCCCCcceeccccccccccCCc-cccC
Q 003199          159 ESILRLPKLRVL-QLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVP-QDLGQWSPLVVLDLSENKLSGPLPA-KVCS  235 (840)
Q Consensus       159 ~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~  235 (840)
                      ..+.++++|+.| .+.+... ...+..+..+++|++|+|++|.++.... ..+..+++|+.|++++| ++..... ....
T Consensus       259 ~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~  336 (594)
T 2p1m_B          259 VALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST  336 (594)
T ss_dssp             HHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred             HHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence            478899999999 4544433 2445566688999999999999774322 23567899999999998 5432222 2335


Q ss_pred             CCCchhhhccc---------ccccccCCcccc-cccCCceEEeeCceeeccCCcccc-CCCcccEEecc--C----Cccc
Q 003199          236 RGKLQYFLVLQ---------NMFSGVLPDSLA-RCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLS--Y----NSFS  298 (840)
Q Consensus       236 l~~L~~L~l~~---------n~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~  298 (840)
                      +++|+.|++.+         +.+++.....+. .+++|++|.+..|.+++..+..+. .+++|+.|+++  +    |.++
T Consensus       337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~  416 (594)
T 2p1m_B          337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT  416 (594)
T ss_dssp             CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred             CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence            78899998833         445443333333 489999999999999866555555 48999999999  4    5565


Q ss_pred             ccC-----CcccCCCCCCceeecccceeeeccchhhcc-cCcccEEEcCCCccCCCCCCcc-cCccccchhcccCCccCC
Q 003199          299 GPI-----ANTVGNARNLSELFMQRNQISGFIPSEIYR-AISLVKIDLSDNLLSGPIPSGI-GNLKKLNLLMLQSNKLNS  371 (840)
Q Consensus       299 ~~~-----~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~  371 (840)
                      +..     +..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++
T Consensus       417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            322     22356789999999988 777666666766 8899999999999976555544 668999999999999965


Q ss_pred             Ccch-hcccccCCCEEECcCccccccCCc
Q 003199          372 SIPN-SLSSLKSLNVLDLSNNLLTGYIPE  399 (840)
Q Consensus       372 ~~~~-~~~~l~~L~~L~l~~N~l~~~~p~  399 (840)
                      ..+. ....+++|+.|+|++|+++.....
T Consensus       496 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  524 (594)
T 2p1m_B          496 KALLANASKLETMRSLWMSSCSVSFGACK  524 (594)
T ss_dssp             HHHHHTGGGGGGSSEEEEESSCCBHHHHH
T ss_pred             HHHHHHHHhCCCCCEEeeeCCCCCHHHHH
Confidence            4444 445689999999999999644333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=3.1e-24  Score=223.31  Aligned_cols=205  Identities=28%  Similarity=0.326  Sum_probs=181.5

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      .+.+.++++++.++ .+|..+.  ++|+.|+|++|   .+..++...|..+++|++|+|++|.++...+..|.++++|++
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSN---KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSS---CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCC---CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence            46889999999999 6777664  68999999999   777888888999999999999999999777777899999999


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccc
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS  176 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  176 (840)
                      |+|++|.+++..+..|..+++|++|+|++|+ +....+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|+
T Consensus        90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            9999999997777888999999999999997 555556678999999999999999997777778999999999999999


Q ss_pred             cccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccccc
Q 003199          177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGP  228 (840)
Q Consensus       177 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  228 (840)
                      ++++.+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            9988888899999999999999999977777788999999999999998743

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.92  E-value=8e-26  Score=257.26  Aligned_cols=195  Identities=16%  Similarity=0.197  Sum_probs=150.4

Q ss_pred             CccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccce
Q 003199          529 TEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  608 (840)
                      ...+.||+|+||+||+|... ++.+|+|+.......  ..........+.+.+|++++++++||||+++..++...+..+
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~--~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~  415 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYR--DERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKR  415 (540)
T ss_dssp             ---------CCEEEEEEECS-SCEEEEEEECCCTTS--CHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTE
T ss_pred             CCCCEEeeCCCEEEEEEEEC-CCeEEEEEEeccccc--chhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccE
Confidence            44678999999999999554 789999987543211  111222334577899999999999999997766666777889


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhc
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA  688 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~  688 (840)
                      +||||+++++|.+++..         +..++.|+++||+|||+   ++|+||||||+|||++.  .+||+|||+|+....
T Consensus       416 lVmE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH~---~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~  481 (540)
T 3en9_A          416 IMMSYINGKLAKDVIED---------NLDIAYKIGEIVGKLHK---NDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL  481 (540)
T ss_dssp             EEEECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHHH---TTEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred             EEEECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHH---CcCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence            99999999999999876         56899999999999999   99999999999999999  999999999987633


Q ss_pred             cCCCC----cceecccccccccCcccccc--CCCCccccchhHHHHHHHHHhCCCCCC
Q 003199          689 RGGKD----STTTVIAGTYGYLAPEYAYS--SKATTKCDVYSFGVVLMELITGRKPVE  740 (840)
Q Consensus       689 ~~~~~----~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~  740 (840)
                      .....    .......||+.|||||++..  ..|+..+|+|+..+-..+.+.++.+|.
T Consensus       482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            11000    01235689999999999876  568888999999999999988887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.3e-24  Score=224.28  Aligned_cols=206  Identities=20%  Similarity=0.224  Sum_probs=154.7

Q ss_pred             CCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcc
Q 003199          166 KLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL  245 (840)
Q Consensus       166 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  245 (840)
                      +++.+++++|.++.+ |..+  .++|++|+|++|+++.+.+..|..+++|++|+|++|+++.                  
T Consensus        17 ~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------   75 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT------------------   75 (270)
T ss_dssp             TTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC------------------
T ss_pred             CCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe------------------
Confidence            456777777777643 3222  2467777777777766555566667777777777766653                  


Q ss_pred             cccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeecc
Q 003199          246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFI  325 (840)
Q Consensus       246 ~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  325 (840)
                            ..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|+.+++|++|+|++|++++..
T Consensus        76 ------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  149 (270)
T 2o6q_A           76 ------LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP  149 (270)
T ss_dssp             ------CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ------eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence                  33445667778888888888887666666777888888888888888777777888888888888888888666


Q ss_pred             chhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          326 PSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       326 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      +..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++.+..+
T Consensus       150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            6667888888888888888887777778888888999999998887777778888889999999998876544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=7.1e-25  Score=228.36  Aligned_cols=228  Identities=25%  Similarity=0.275  Sum_probs=167.4

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      .++..+++.++.+.+.  ..+..+++|+.|++++|   .+..++  .+..+++|++|++++|.+.+.  ..+..+++|++
T Consensus        19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~---~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~   89 (272)
T 3rfs_A           19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNS---DIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTY   89 (272)
T ss_dssp             HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTS---CCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCE
T ss_pred             HHHHHHHhcCcccccc--cccccccceeeeeeCCC---Cccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCE
Confidence            3455566667766633  23556777888888887   444443  367778888888888887652  46777888888


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccc
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS  176 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  176 (840)
                      |+|++|.+++..+..|..+++|++|+|++|+ +.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus        90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A           90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence            8888888886666677888888888888886 444445557788888888888888887666677788888888888888


Q ss_pred             cccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcc
Q 003199          177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS  256 (840)
Q Consensus       177 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  256 (840)
                      +++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++.+       .++.++.+.++.|.+.|.+|..
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence            887777777888888888888888887777777888888888888887763       3445677777777777776666


Q ss_pred             ccccc
Q 003199          257 LARCK  261 (840)
Q Consensus       257 ~~~l~  261 (840)
                      ++.++
T Consensus       242 ~~~~~  246 (272)
T 3rfs_A          242 AGSVA  246 (272)
T ss_dssp             TSCBC
T ss_pred             ccccC
Confidence            65544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=4.6e-24  Score=223.91  Aligned_cols=204  Identities=24%  Similarity=0.285  Sum_probs=177.5

Q ss_pred             CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCC
Q 003199           12 DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNV   91 (840)
Q Consensus        12 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   91 (840)
                      .++.+++++++++++|+++ .+|..+.  ++|+.|+|++|   .+..+++..|..+++|+.|+|++|.+++..+.  +.+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l   76 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSEN---LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTL   76 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTS---CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCC---cCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCC
Confidence            4678899999999999999 6776664  68999999999   67777888899999999999999999865443  788


Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEE
Q 003199           92 TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ  171 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (840)
                      ++|++|+|++|+|+ .+|..+..+++|++|+|++|+ +.+..+..|.++++|++|+|++|++++..+..|..+++|+.|+
T Consensus        77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            99999999999998 778888999999999999997 4555557789999999999999999987777888999999999


Q ss_pred             eeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccc
Q 003199          172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       172 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      |++|+|+.+++..|..+++|++|+|++|+++ .+|..+..+.+|+.|+|++|++.
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            9999999888888899999999999999998 67777888889999999999886

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=3.9e-24  Score=224.44  Aligned_cols=205  Identities=21%  Similarity=0.264  Sum_probs=159.9

Q ss_pred             ccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCch
Q 003199          161 ILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ  240 (840)
Q Consensus       161 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  240 (840)
                      +.++++|+.+++++|.++.+++..   .++++.|+|++|++++..+..|..+++|+.|+|++|.|++.            
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------------   70 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE------------
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc------------
Confidence            456677777777777777444332   25677777777777766666677777777777777776632            


Q ss_pred             hhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccce
Q 003199          241 YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQ  320 (840)
Q Consensus       241 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  320 (840)
                                  .+  ...+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|++|+|++|+
T Consensus        71 ------------~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           71 ------------QV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             ------------EC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             ------------cC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence                        11  256778899999999988 778888888999999999999988888888889999999999999


Q ss_pred             eeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCcccccc
Q 003199          321 ISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGY  396 (840)
Q Consensus       321 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  396 (840)
                      |++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|++.+.
T Consensus       136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            98777777788889999999999998666667788889999999999997 6677777778899999999988754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=6.6e-24  Score=221.05  Aligned_cols=213  Identities=25%  Similarity=0.269  Sum_probs=189.5

Q ss_pred             CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCC
Q 003199           12 DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNV   91 (840)
Q Consensus        12 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   91 (840)
                      .+..+++|+.|++++|.++ .++ .+..+++|++|+|++|   .+..++  .+..+++|++|+|++|.+++..+..|+.+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n---~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  108 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGN---KLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKL  108 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTS---CCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCC---CCCCch--hhcCCCCCCEEECCCCccCccChhHhcCC
Confidence            3567899999999999998 444 5889999999999999   455543  68899999999999999998888889999


Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEE
Q 003199           92 TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ  171 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (840)
                      ++|++|+|++|++++..+..|..+++|++|+|++|+ +.+..+..+..+++|++|+|++|++++..+..|..+++|++|+
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            999999999999998778889999999999999997 5555556689999999999999999988888889999999999


Q ss_pred             eeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCc
Q 003199          172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKL  239 (840)
Q Consensus       172 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  239 (840)
                      +++|++++..+..|..+++|++|+|++|++.+.       +++|+.|+++.|.++|.+|..++.+...
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            999999999888899999999999999998743       5579999999999999999988876543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1e-25  Score=245.29  Aligned_cols=261  Identities=18%  Similarity=0.208  Sum_probs=169.1

Q ss_pred             eecccCccccccCCcccCCCCCCCeeeccCCcccccCC----ccccCCC-CCcEEEeeccccccccchhhhcC-----CC
Q 003199          121 LELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIP----ESILRLP-KLRVLQLYNNSLSGEISSVIANS-----TT  190 (840)
Q Consensus       121 L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l-----~~  190 (840)
                      ++|+.|. +.+.+|..+...++|++|+|++|.+++..+    ..|..++ +|++|+|++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCT-TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccc-chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            5666665 555666666666668888888888876555    6667777 78888888888777666666664     77


Q ss_pred             CCEEEccCCcCcccCCcCC----CCC-CCcceeccccccccccCCccccCCCCchhhhcccccccccCCccccc-ccCCc
Q 003199          191 LTMLSLYDNSLTGEVPQDL----GQW-SPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLAR-CKNLL  264 (840)
Q Consensus       191 L~~L~L~~N~l~~~~~~~l----~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~  264 (840)
                      |++|+|++|++++..+..+    ..+ ++|++|+|++|++++..+..++                    ..+.. .++|+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--------------------~~l~~~~~~L~  141 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK--------------------QAFSNLPASIT  141 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH--------------------HHHTTSCTTCC
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH--------------------HHHHhCCCcee
Confidence            8888888887775554433    333 6777777777777654333221                    12223 24677


Q ss_pred             eEEeeCceeeccCC----ccccCCC-cccEEeccCCcccccCCcccC----CC-CCCceeecccceeeec----cchhhc
Q 003199          265 RFRVSNNHLEGSIP----EGILSLP-HVSIIDLSYNSFSGPIANTVG----NA-RNLSELFMQRNQISGF----IPSEIY  330 (840)
Q Consensus       265 ~L~l~~N~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~----~p~~~~  330 (840)
                      +|+|++|.+++..+    ..+..++ +|+.|+|++|++++..+..+.    .. ++|++|+|++|+|++.    ++..+.
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence            77777777764332    2334444 777788888877766554333    33 5788888888887752    444555


Q ss_pred             cc-CcccEEEcCCCccCCCCC----CcccCccccchhcccCCccCCCc-------chhcccccCCCEEECcCccccccCC
Q 003199          331 RA-ISLVKIDLSDNLLSGPIP----SGIGNLKKLNLLMLQSNKLNSSI-------PNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       331 ~l-~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      .. ++|+.|+|++|++++..+    ..+..+++|+.|+|++|.+.+..       +..+..+++|+.||+++|++.+..|
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            53 478888888888875433    33456677888888888854433       3356677778888888888876655


Q ss_pred             chhh
Q 003199          399 ESLC  402 (840)
Q Consensus       399 ~~~~  402 (840)
                      ..+.
T Consensus       302 ~~~~  305 (362)
T 3goz_A          302 IPIS  305 (362)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=8.7e-24  Score=224.74  Aligned_cols=228  Identities=21%  Similarity=0.193  Sum_probs=147.4

Q ss_pred             CCCcEEEeeccccccccch---hhhcCCCCCEEEccCCcCcccCCcCC--CCCCCcceeccccccccccCCccccCCCCc
Q 003199          165 PKLRVLQLYNNSLSGEISS---VIANSTTLTMLSLYDNSLTGEVPQDL--GQWSPLVVLDLSENKLSGPLPAKVCSRGKL  239 (840)
Q Consensus       165 ~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  239 (840)
                      ..++.|.+.++.++.....   .+..+++|++|+|++|.+.+..|..+  ..+++|++|+|++|++++..+..       
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-------  136 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL-------  136 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH-------
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh-------
Confidence            3467777777776532111   12345679999999999988888887  88899999999999888543310       


Q ss_pred             hhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCccccc---C-CcccCCCCCCceee
Q 003199          240 QYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP---I-ANTVGNARNLSELF  315 (840)
Q Consensus       240 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~~~~l~~L~~L~  315 (840)
                                   ....+..+++|++|++++|++.+..+..|..+++|++|+|++|++.+.   . +..++.+++|++|+
T Consensus       137 -------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~  203 (310)
T 4glp_A          137 -------------AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA  203 (310)
T ss_dssp             -------------HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred             -------------HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence                         001233566777777777777666666677777777777777776531   1 22345677777777


Q ss_pred             cccceeeeccch----hhcccCcccEEEcCCCccCCCCCCcccCc---cccchhcccCCccCCCcchhcccccCCCEEEC
Q 003199          316 MQRNQISGFIPS----EIYRAISLVKIDLSDNLLSGPIPSGIGNL---KKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDL  388 (840)
Q Consensus       316 L~~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  388 (840)
                      |++|+++. ++.    .+..+++|++|+|++|++++..|..+..+   ++|+.|+|++|+|+ .+|..+.  ++|++|||
T Consensus       204 Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L  279 (310)
T 4glp_A          204 LRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL  279 (310)
T ss_dssp             CCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred             CCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence            77777752 222    23556777777777777776666666555   57777777777776 4555553  67777777


Q ss_pred             cCccccccCCchhhcc-CCCeEEccCCCCcC
Q 003199          389 SNNLLTGYIPESLCEL-LPNSINFSNNRLSG  418 (840)
Q Consensus       389 ~~N~l~~~~p~~~~~~-~~~~l~l~~N~l~~  418 (840)
                      ++|+|++. |. +..+ .++.|++++|+++.
T Consensus       280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            77777752 22 2222 44677777777753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1e-24  Score=237.27  Aligned_cols=255  Identities=17%  Similarity=0.219  Sum_probs=127.1

Q ss_pred             EecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCc----ccccccc-cccEEEecCccccccCCccccCC-----
Q 003199           22 LDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPE----SSIFRLT-KLRIMVLATCALHGQIPASIGNV-----   91 (840)
Q Consensus        22 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----   91 (840)
                      ++|+.|.+++.+|..+....+|++|+|++|   .+...+.    ..|..++ +|++|+|++|.+....+..+..+     
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n---~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN---NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTS---CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCC---CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            455556665555555544455666666666   4444444    4445555 55555555555554444444443     


Q ss_pred             CCCcEEEccCCcccccCchhhhc----C-CCCCeeecccCccccccCCcc----cCC-CCCCCeeeccCCcccccCC---
Q 003199           92 TSLTDLELTGNFITGHIPPEIGL----L-KNLRQLELYYNQQLAGTIPEE----LGN-LTELTDLDMSVNHLSGKIP---  158 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~----l-~~L~~L~L~~n~~~~~~~p~~----l~~-l~~L~~L~L~~n~l~~~~~---  158 (840)
                      ++|++|+|++|.+++..+..+..    + ++|++|+|++|+ +.+..+..    +.. .++|++|+|++|.+++..+   
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            55666666666665444443333    2 556666666555 22222211    222 2456666666666653222   


Q ss_pred             -ccccCCC-CCcEEEeeccccccccchhhh----cC-CCCCEEEccCCcCccc----CCcCCCC-CCCcceecccccccc
Q 003199          159 -ESILRLP-KLRVLQLYNNSLSGEISSVIA----NS-TTLTMLSLYDNSLTGE----VPQDLGQ-WSPLVVLDLSENKLS  226 (840)
Q Consensus       159 -~~~~~l~-~L~~L~L~~N~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~----~~~~l~~-l~~L~~L~L~~N~l~  226 (840)
                       ..+..++ +|++|+|++|++++..+..+.    .+ ++|++|+|++|+|+..    ++..+.. .++|++|+|++|+++
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence             2223333 566666666666544443322    23 3666666666665532    2222322 235666666666555


Q ss_pred             ccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeec-------cCCccccCCCcccEEeccCCcccc
Q 003199          227 GPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEG-------SIPEGILSLPHVSIIDLSYNSFSG  299 (840)
Q Consensus       227 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~  299 (840)
                      +..+..+                    ...+..+++|+.|++++|.+.+       .++..+..+++|+.||+++|++.+
T Consensus       239 ~~~~~~l--------------------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          239 GPSLENL--------------------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCCHHHH--------------------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             cHHHHHH--------------------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            3322111                    1223444555556666555321       223345566667777777776664


Q ss_pred             c
Q 003199          300 P  300 (840)
Q Consensus       300 ~  300 (840)
                      .
T Consensus       299 ~  299 (362)
T 3goz_A          299 S  299 (362)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.5e-23  Score=213.95  Aligned_cols=178  Identities=20%  Similarity=0.247  Sum_probs=104.2

Q ss_pred             CCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc-ccccCCccccCCCCCcEEEccC-CcccccCchhhhcCCCCC
Q 003199           42 NLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA-LHGQIPASIGNVTSLTDLELTG-NFITGHIPPEIGLLKNLR  119 (840)
Q Consensus        42 ~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~  119 (840)
                      +|++|+|++|   .+..+++..|..+++|++|++++|. ++++.+..|.++++|++|+|++ |+++...+..|..+++|+
T Consensus        32 ~l~~L~l~~n---~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKLIET---HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TCCEEEEESC---CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             cccEEEEeCC---cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            5666666666   4555555556666666666666664 5555555566666666666665 666654455566666666


Q ss_pred             eeecccCccccccCCcccCCCCCCC---eeeccCC-cccccCCccccCCCCCc-EEEeeccccccccchhhhcCCCCCEE
Q 003199          120 QLELYYNQQLAGTIPEELGNLTELT---DLDMSVN-HLSGKIPESILRLPKLR-VLQLYNNSLSGEISSVIANSTTLTML  194 (840)
Q Consensus       120 ~L~L~~n~~~~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L  194 (840)
                      +|++++|+  ...+|. +..+++|+   +|++++| .++.+.+..|..+++|+ .|++++|+++.+.+..|.. ++|++|
T Consensus       109 ~L~l~~n~--l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L  184 (239)
T 2xwt_C          109 FLGIFNTG--LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV  184 (239)
T ss_dssp             EEEEEEEC--CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE
T ss_pred             EEeCCCCC--Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE
Confidence            66666665  222444 55555555   6666666 66655555566666666 6666666666444444444 566666


Q ss_pred             EccCCc-CcccCCcCCCCC-CCcceecccccccc
Q 003199          195 SLYDNS-LTGEVPQDLGQW-SPLVVLDLSENKLS  226 (840)
Q Consensus       195 ~L~~N~-l~~~~~~~l~~l-~~L~~L~L~~N~l~  226 (840)
                      +|++|+ ++.+.+..|..+ ++|+.|+|++|+++
T Consensus       185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             EcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            666663 655545555555 66666666666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=4.7e-23  Score=210.31  Aligned_cols=206  Identities=17%  Similarity=0.220  Sum_probs=154.0

Q ss_pred             cccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCc-CcccCCcCCCCCCCcceecccc-ccccccC
Q 003199          152 HLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNS-LTGEVPQDLGQWSPLVVLDLSE-NKLSGPL  229 (840)
Q Consensus       152 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~  229 (840)
                      .++ .+|. +.  ++|++|++++|+++++.+..|.++++|++|+|++|+ ++.+.+..|.++++|++|+|++ |++++  
T Consensus        22 ~l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--   95 (239)
T 2xwt_C           22 DIQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--   95 (239)
T ss_dssp             SCS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--
T ss_pred             Ccc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--
Confidence            355 3454 33  378888888888887777777788888888888886 7766666777777777777777 77763  


Q ss_pred             CccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCccc---EEeccCC-cccccCCccc
Q 003199          230 PAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVS---IIDLSYN-SFSGPIANTV  305 (840)
Q Consensus       230 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~  305 (840)
                                            ..+..|..+++|++|++++|++++ +|. +..+++|+   .|++++| ++++..+..|
T Consensus        96 ----------------------i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~  151 (239)
T 2xwt_C           96 ----------------------IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF  151 (239)
T ss_dssp             ----------------------ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred             ----------------------cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc
Confidence                                  344567777888888888888874 665 77777777   8888888 8887777788


Q ss_pred             CCCCCCc-eeecccceeeeccchhhcccCcccEEEcCCCc-cCCCCCCcccCc-cccchhcccCCccCCCcchhcccccC
Q 003199          306 GNARNLS-ELFMQRNQISGFIPSEIYRAISLVKIDLSDNL-LSGPIPSGIGNL-KKLNLLMLQSNKLNSSIPNSLSSLKS  382 (840)
Q Consensus       306 ~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~  382 (840)
                      ..+++|+ .|++++|+++ .+|...+..++|+.|+|++|+ +++..+..|..+ ++|+.|+|++|++++..+.   .+++
T Consensus       152 ~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~  227 (239)
T 2xwt_C          152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEH  227 (239)
T ss_dssp             TTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTT
T ss_pred             cchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hhcc
Confidence            8888888 8888888888 444444444788888888885 886666778888 8888888888888754433   5677


Q ss_pred             CCEEECcCc
Q 003199          383 LNVLDLSNN  391 (840)
Q Consensus       383 L~~L~l~~N  391 (840)
                      |+.|+++++
T Consensus       228 L~~L~l~~~  236 (239)
T 2xwt_C          228 LKELIARNT  236 (239)
T ss_dssp             CSEEECTTC
T ss_pred             CceeeccCc
Confidence            888888876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=5.6e-23  Score=211.31  Aligned_cols=181  Identities=19%  Similarity=0.233  Sum_probs=146.6

Q ss_pred             CCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEe
Q 003199          189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRV  268 (840)
Q Consensus       189 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  268 (840)
                      ...++++++++.++ .+|..+.  ++|+.|+|++|.+++                        ..+..|..+++|++|+|
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~------------------------~~~~~~~~l~~L~~L~L   66 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLAT------------------------LSDATFRGLTKLTWLNL   66 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCC------------------------CCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCc------------------------cCHhHhcCcccCCEEEC
Confidence            35677888888887 4555544  477788888887764                        34445667778888888


Q ss_pred             eCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCC
Q 003199          269 SNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGP  348 (840)
Q Consensus       269 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  348 (840)
                      ++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|+|++.
T Consensus        67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  146 (251)
T 3m19_A           67 DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI  146 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence            88888877777778888888888888888877778888888888888888888877666778888999999999999877


Q ss_pred             CCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCcccccc
Q 003199          349 IPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGY  396 (840)
Q Consensus       349 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  396 (840)
                      .+..|+.+++|+.|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            777888999999999999999988888899999999999999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.1e-25  Score=245.24  Aligned_cols=249  Identities=20%  Similarity=0.222  Sum_probs=160.7

Q ss_pred             cccCCcccCCCCCCCeeeccCCcccccCC----ccccCCCCCcEEEeecccc---ccccchhh-------hcCCCCCEEE
Q 003199          130 AGTIPEELGNLTELTDLDMSVNHLSGKIP----ESILRLPKLRVLQLYNNSL---SGEISSVI-------ANSTTLTMLS  195 (840)
Q Consensus       130 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l---~~~~~~~~-------~~l~~L~~L~  195 (840)
                      ...++..+..+++|++|+|++|.++...+    ..+..+++|++|+|++|.+   ++..|..+       ..+++|++|+
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            34455667777888888888888876533    3366778888888887643   33334333       5677778888


Q ss_pred             ccCCcCcc----cCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccc---------cC
Q 003199          196 LYDNSLTG----EVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARC---------KN  262 (840)
Q Consensus       196 L~~N~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l---------~~  262 (840)
                      |++|+++.    .++..+..+++|++|+|++|.+++..+..+.                    ..+..+         ++
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~  160 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPP  160 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCC
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCC
Confidence            88777775    3455666677777777777777543322221                    112222         67


Q ss_pred             CceEEeeCceee-ccCC---ccccCCCcccEEeccCCcccc-----cCCcccCCCCCCceeecccceee----eccchhh
Q 003199          263 LLRFRVSNNHLE-GSIP---EGILSLPHVSIIDLSYNSFSG-----PIANTVGNARNLSELFMQRNQIS----GFIPSEI  329 (840)
Q Consensus       263 L~~L~l~~N~l~-~~~~---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~p~~~  329 (840)
                      |++|++++|+++ +.++   ..+..+++|+.|+|++|+++.     ..+..+..+++|+.|+|++|.++    ..+|..+
T Consensus       161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l  240 (386)
T 2ca6_A          161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  240 (386)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence            777777777775 2333   345566777777777777762     23335667777777777777775    4566667


Q ss_pred             cccCcccEEEcCCCccCCC----CCCcc--cCccccchhcccCCccCC----Ccchhc-ccccCCCEEECcCccccccCC
Q 003199          330 YRAISLVKIDLSDNLLSGP----IPSGI--GNLKKLNLLMLQSNKLNS----SIPNSL-SSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       330 ~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      ..+++|+.|+|++|++++.    ++..+  +.+++|+.|+|++|++++    .+|..+ .++++|+.|+|++|++++..|
T Consensus       241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            7777777777777777654    34444  336777777777777765    356655 556777777777777775543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.3e-25  Score=245.03  Aligned_cols=248  Identities=21%  Similarity=0.231  Sum_probs=120.2

Q ss_pred             cCCccccCCCCCcEEEccCCcccccCch----hhhcCCCCCeeecccCc--cccccCCccc-------CCCCCCCeeecc
Q 003199           83 QIPASIGNVTSLTDLELTGNFITGHIPP----EIGLLKNLRQLELYYNQ--QLAGTIPEEL-------GNLTELTDLDMS  149 (840)
Q Consensus        83 ~~~~~~~~l~~L~~L~L~~n~i~~~~p~----~~~~l~~L~~L~L~~n~--~~~~~~p~~l-------~~l~~L~~L~L~  149 (840)
                      .++..+..+++|++|+|++|.|++..+.    .|..+++|++|+|++|.  .+.+.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3445555666667777777766654332    34456666666666652  1222333322       455666666666


Q ss_pred             CCcccc----cCCccccCCCCCcEEEeeccccccccchhhhc----C---------CCCCEEEccCCcCcc-cCC---cC
Q 003199          150 VNHLSG----KIPESILRLPKLRVLQLYNNSLSGEISSVIAN----S---------TTLTMLSLYDNSLTG-EVP---QD  208 (840)
Q Consensus       150 ~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l---------~~L~~L~L~~N~l~~-~~~---~~  208 (840)
                      +|.++.    .++..+..+++|++|+|++|.++...+..+..    +         ++|++|+|++|+++. ..+   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            666654    24445555666666666666665333322222    2         455555555555441 111   12


Q ss_pred             CCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCccc
Q 003199          209 LGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVS  288 (840)
Q Consensus       209 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  288 (840)
                      +..+++|++|+|++|+++...                   +..                        ..+..+..+++|+
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g-------------------~~~------------------------l~~~~l~~~~~L~  219 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEG-------------------IEH------------------------LLLEGLAYCQELK  219 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHH-------------------HHH------------------------HHHTTGGGCTTCC
T ss_pred             HHhCCCcCEEECcCCCCCHhH-------------------HHH------------------------HHHHHhhcCCCcc
Confidence            233344444444444433100                   000                        1222344444444


Q ss_pred             EEeccCCccc----ccCCcccCCCCCCceeecccceeeec----cchhhc--ccCcccEEEcCCCccCC----CCCCcc-
Q 003199          289 IIDLSYNSFS----GPIANTVGNARNLSELFMQRNQISGF----IPSEIY--RAISLVKIDLSDNLLSG----PIPSGI-  353 (840)
Q Consensus       289 ~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-  353 (840)
                      .|+|++|.++    ..++..+..+++|+.|+|++|++++.    +|..+.  .+++|+.|+|++|.+++    .+|..+ 
T Consensus       220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~  299 (386)
T 2ca6_A          220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID  299 (386)
T ss_dssp             EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred             EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence            4444444443    23334444455555555555555433    233332  25556666666666654    244444 


Q ss_pred             cCccccchhcccCCccCCCc
Q 003199          354 GNLKKLNLLMLQSNKLNSSI  373 (840)
Q Consensus       354 ~~l~~L~~L~Ls~N~l~~~~  373 (840)
                      .++++|+.|+|++|++++..
T Consensus       300 ~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          300 EKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHCTTCCEEECTTSBSCTTS
T ss_pred             hcCCCceEEEccCCcCCcch
Confidence            44566666666666666544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=4.9e-23  Score=218.91  Aligned_cols=202  Identities=21%  Similarity=0.208  Sum_probs=90.3

Q ss_pred             CCcEEEccCCcccccCchhh--hcCCCCCeeecccCccccccCC----cccCCCCCCCeeeccCCcccccCCccccCCCC
Q 003199           93 SLTDLELTGNFITGHIPPEI--GLLKNLRQLELYYNQQLAGTIP----EELGNLTELTDLDMSVNHLSGKIPESILRLPK  166 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~L~~n~~~~~~~p----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  166 (840)
                      +|++|+|++|.+++..|..+  ..+++|++|+|++|+ +.+..+    ..+..+++|++|+|++|++.+..+..|..+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            34555555555444444444  444555555555444 222111    12234455555555555555444455555555


Q ss_pred             CcEEEeeccccccc---c-chhhhcCCCCCEEEccCCcCcccCCc----CCCCCCCcceeccccccccccCCccccCCCC
Q 003199          167 LRVLQLYNNSLSGE---I-SSVIANSTTLTMLSLYDNSLTGEVPQ----DLGQWSPLVVLDLSENKLSGPLPAKVCSRGK  238 (840)
Q Consensus       167 L~~L~L~~N~l~~~---~-~~~~~~l~~L~~L~L~~N~l~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  238 (840)
                      |++|+|++|++.+.   . +..+..+++|++|+|++|+++. ++.    .+..+++|++|+|++|++++..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~--  247 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC--  247 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC--
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc--
Confidence            55555555554321   1 1112345555555555555542 111    12344555555555555554333222211  


Q ss_pred             chhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeeccc
Q 003199          239 LQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQR  318 (840)
Q Consensus       239 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  318 (840)
                                         ..+++|++|++++|+|+ .+|..+.  ++|+.|+|++|++++. |. +..+++|+.|+|++
T Consensus       248 -------------------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~  303 (310)
T 4glp_A          248 -------------------MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG  303 (310)
T ss_dssp             -------------------CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred             -------------------cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence                               11134444444444444 3343332  4455555555555433 11 34445555555555


Q ss_pred             ceee
Q 003199          319 NQIS  322 (840)
Q Consensus       319 N~l~  322 (840)
                      |+++
T Consensus       304 N~l~  307 (310)
T 4glp_A          304 NPFL  307 (310)
T ss_dssp             TTTS
T ss_pred             CCCC
Confidence            5544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=7.6e-24  Score=228.33  Aligned_cols=255  Identities=18%  Similarity=0.229  Sum_probs=160.3

Q ss_pred             CCEEecCCCcCcccCCccccCC--CCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccccc-CCccccCCCCCc
Q 003199           19 LRRLDLSNNLFTGQFPLSVFNL--TNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQ-IPASIGNVTSLT   95 (840)
Q Consensus        19 L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~   95 (840)
                      ++.|++++|.+.   |..+..+  ++++.|++++|   .+...+.. +..+++|+.|+|++|.+... ++..+..+++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n---~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS---FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC---EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCc---cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            667777777665   4556666  77777777777   44444443 44577777777777776644 566667777777


Q ss_pred             EEEccCCcccccCchhhhcCCCCCeeecccCccccc-cCCcccCCCCCCCeeeccCC-ccccc-CCccccCCC-CCcEEE
Q 003199           96 DLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAG-TIPEELGNLTELTDLDMSVN-HLSGK-IPESILRLP-KLRVLQ  171 (840)
Q Consensus        96 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~p~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~  171 (840)
                      +|+|++|.+++..+..+..+++|++|+|++|..+.+ .++..+..+++|++|+|++| .+++. ++..+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            777777777766666777777777777777732332 34555666777777777777 66643 345566667 777777


Q ss_pred             eecc--ccc-cccchhhhcCCCCCEEEccCCc-CcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccc
Q 003199          172 LYNN--SLS-GEISSVIANSTTLTMLSLYDNS-LTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN  247 (840)
Q Consensus       172 L~~N--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n  247 (840)
                      |++|  .++ +..+..+..+++|++|+|++|. +++..+..+..+++|+.|+|++|.  +..+.                
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~----------------  263 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPE----------------  263 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGG----------------
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHH----------------
Confidence            7777  343 2345556667777777777776 555555566666777777777764  11111                


Q ss_pred             cccccCCcccccccCCceEEeeCceeeccCCccccCC-CcccEEeccCCcccccCCcccCC
Q 003199          248 MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSL-PHVSIIDLSYNSFSGPIANTVGN  307 (840)
Q Consensus       248 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~  307 (840)
                           ....+..+++|++|++++| ++   ...+..+ ..|..|++++|++++..|..++.
T Consensus       264 -----~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          264 -----TLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             -----GGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             -----HHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence                 1124566777777777777 32   2233333 23666667777777777766654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.5e-22  Score=214.50  Aligned_cols=194  Identities=26%  Similarity=0.342  Sum_probs=132.5

Q ss_pred             CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCC
Q 003199           13 FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVT   92 (840)
Q Consensus        13 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   92 (840)
                      ++.+++|++|++++|.++ .+| .+..+++|++|+|++|   .+..++.  +..+++|++|+|++|.+++.  ..+..++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n---~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~  107 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDN---QITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQ  107 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSS---CCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCT
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCC---cCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCC
Confidence            445677777777777777 444 4777777777777777   4555554  77777777777777777643  3577777


Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEe
Q 003199           93 SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQL  172 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  172 (840)
                      +|++|+|++|++++ ++ .+..+++|++|++++|+ +. .++. +..+++|++|+|++|.+++..+  +..+++|+.|++
T Consensus       108 ~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~-l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l  180 (308)
T 1h6u_A          108 SIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQ-IT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA  180 (308)
T ss_dssp             TCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSC-CC-CCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCc-cC-cCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEEC
Confidence            77777777777774 33 27777777777777776 22 2332 6677777777777777774332  677777777777


Q ss_pred             eccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccc
Q 003199          173 YNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       173 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      ++|++++..+  +..+++|++|+|++|++++..  .+..+++|+.|+|++|+++
T Consensus       181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          181 DDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            7777765443  667777777777777777543  3667777777777777776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=6.9e-24  Score=228.67  Aligned_cols=255  Identities=17%  Similarity=0.167  Sum_probs=163.7

Q ss_pred             CCcEEEccCCcccccCchhhhcC--CCCCeeecccCccccccCCcccCCCCCCCeeeccCCccccc-CCccccCCCCCcE
Q 003199           93 SLTDLELTGNFITGHIPPEIGLL--KNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGK-IPESILRLPKLRV  169 (840)
Q Consensus        93 ~L~~L~L~~n~i~~~~p~~~~~l--~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  169 (840)
                      .++.|++++|.+.   +..+..+  ++++.|++++|. +.+. +..+..+++|++|+|++|.+++. ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~-l~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSF-MDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCE-ECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCcc-cccc-chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3667777777765   4556666  777777777776 3333 33355677777777777777654 5666777777777


Q ss_pred             EEeeccccccccchhhhcCCCCCEEEccCC-cCccc-CCcCCCCCCCcceeccccc-cccccCCccccCCCCchhhhccc
Q 003199          170 LQLYNNSLSGEISSVIANSTTLTMLSLYDN-SLTGE-VPQDLGQWSPLVVLDLSEN-KLSGPLPAKVCSRGKLQYFLVLQ  246 (840)
Q Consensus       170 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  246 (840)
                      |+|++|.+++..+..+..+++|++|+|++| .+++. ++..+..+++|++|+|++| .+++.                  
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------  184 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------  184 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence            777777777666667777777777777777 56532 3444556677777777777 66532                  


Q ss_pred             ccccccCCccccccc-CCceEEeeCc--eee-ccCCccccCCCcccEEeccCCc-ccccCCcccCCCCCCceeecccce-
Q 003199          247 NMFSGVLPDSLARCK-NLLRFRVSNN--HLE-GSIPEGILSLPHVSIIDLSYNS-FSGPIANTVGNARNLSELFMQRNQ-  320 (840)
Q Consensus       247 n~~~~~~~~~~~~l~-~L~~L~l~~N--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-  320 (840)
                           .++..+..++ +|++|++++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|+|++|. 
T Consensus       185 -----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          185 -----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             -----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             -----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence                 1233455556 6666666666  333 2344555566777777777776 555555666677777777777774 


Q ss_pred             eeeccchhhcccCcccEEEcCCCccCCCCCCcccCc-cccchhcccCCccCCCcchhccc
Q 003199          321 ISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNL-KKLNLLMLQSNKLNSSIPNSLSS  379 (840)
Q Consensus       321 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~  379 (840)
                      +.......+..+++|+.|++++| ++   ...+..+ ..+..|++++|++++..|..++.
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence            32222235667778888888877 32   2234444 34777778888888877776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.2e-21  Score=201.47  Aligned_cols=178  Identities=23%  Similarity=0.258  Sum_probs=98.8

Q ss_pred             CCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEE
Q 003199           18 NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDL   97 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   97 (840)
                      +.++++++++.++ .+|..+.  ++|+.|+|++|   .+..+++..|..+++|++|+|++|.+.+..+..|..+++|++|
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQST---GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTS---CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCC---CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence            4566777777776 5555443  45666666666   4444554455555555555555555554444445555555555


Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccc
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL  177 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  177 (840)
                      +|++|++++..+..                         |..+++|++|+|++|+|++..+..|..+++|++|+|++|+|
T Consensus        89 ~L~~n~l~~~~~~~-------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A           89 GLANNQLASLPLGV-------------------------FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             ECTTSCCCCCCTTT-------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccChhH-------------------------hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence            55555555433344                         44555555555555555544444455555555555555555


Q ss_pred             ccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccc
Q 003199          178 SGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       178 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      +++.+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus       144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            5555555555566666666666665555555555666666666666655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=8.9e-22  Score=212.90  Aligned_cols=241  Identities=17%  Similarity=0.158  Sum_probs=145.4

Q ss_pred             CeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccccc-ccchhhhcCCCCCE-EEc
Q 003199          119 RQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG-EISSVIANSTTLTM-LSL  196 (840)
Q Consensus       119 ~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~-L~L  196 (840)
                      +.++.++++  ...+|..+  .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+ +.+++|.++++|.+ +.+
T Consensus        12 ~~v~C~~~~--Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESK--VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTT--CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCC--CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            455666655  33556544  2466777777777765555566777777777777776643 33445666666554 444


Q ss_pred             cCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeC-ceeec
Q 003199          197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSN-NHLEG  275 (840)
Q Consensus       197 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-N~l~~  275 (840)
                      +.|+++.+.+..|..+++|++|++++|+++...+.                        .+....++..|++.+ |++..
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~------------------------~~~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV------------------------HKIHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC------------------------TTCCBSSCEEEEEESCTTCCE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCch------------------------hhcccchhhhhhhcccccccc
Confidence            55666666666666666777777776666644333                        333444555555543 44553


Q ss_pred             cCCccccCCC-cccEEeccCCcccccCCcccCCCCCCceeeccc-ceeeeccchhhcccCcccEEEcCCCccCCCCCCcc
Q 003199          276 SIPEGILSLP-HVSIIDLSYNSFSGPIANTVGNARNLSELFMQR-NQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI  353 (840)
Q Consensus       276 ~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  353 (840)
                      ..+..|..+. .++.|+|++|+|+.+.+..|. ..+|++|++++ |.++.+.+..|..+++|+.|||++|+|+...+..+
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            4444455443 466677777777655544443 34566777653 55654444556777777777777777775555556


Q ss_pred             cCccccchhcccCCccCCCcchhcccccCCCEEECcCcc
Q 003199          354 GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNL  392 (840)
Q Consensus       354 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  392 (840)
                      .++++|+.+++  +.++ .+| .+..+++|+.++++++.
T Consensus       223 ~~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          223 ENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             TTCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred             ccchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCCc
Confidence            66666666655  3343 455 36778888888887654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=9.6e-22  Score=208.38  Aligned_cols=172  Identities=27%  Similarity=0.376  Sum_probs=76.2

Q ss_pred             ccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCC
Q 003199           88 IGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKL  167 (840)
Q Consensus        88 ~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (840)
                      +..+++|++|+|++|.+++. +. +..+++|++|+|++|+ +. .++ .+..+++|++|+|++|++++. + .+..+++|
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~-l~-~~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L  131 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNP-LK-NVS-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNL  131 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCC-CS-CCG-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTC
T ss_pred             hhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCc-CC-Cch-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCC
Confidence            34444444444444444422 22 4444444444444444 11 121 344445555555555555432 2 24455555


Q ss_pred             cEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccc
Q 003199          168 RVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN  247 (840)
Q Consensus       168 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n  247 (840)
                      ++|++++|++++..+  +..+++|++|+|++|++++..+  +..+++|+.|+|++|++++..+  +..+++|++|++++|
T Consensus       132 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN  205 (308)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTS
T ss_pred             CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCC
Confidence            555555555543322  4455555555555555553222  4555555555555555543211  222222222222222


Q ss_pred             cccccCCcccccccCCceEEeeCceee
Q 003199          248 MFSGVLPDSLARCKNLLRFRVSNNHLE  274 (840)
Q Consensus       248 ~~~~~~~~~~~~l~~L~~L~l~~N~l~  274 (840)
                      .+.+..  .+..+++|+.|++++|.++
T Consensus       206 ~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          206 QISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             ccCccc--cccCCCCCCEEEccCCeee
Confidence            222222  1445555555555555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=8.7e-22  Score=212.97  Aligned_cols=152  Identities=18%  Similarity=0.211  Sum_probs=86.5

Q ss_pred             cEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCC-cccCCCCCCCe-eec
Q 003199           71 RIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP-EELGNLTELTD-LDM  148 (840)
Q Consensus        71 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p-~~l~~l~~L~~-L~L  148 (840)
                      ++++.++++++ .+|..+.  +++++|+|++|+|+...+..|.++++|++|+|++|++ .+.+| .+|.++++|.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i-~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT-CCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC-CCccChhHhhcchhhhhhhcc
Confidence            34555566665 4454442  4566677777776644445566666666666666652 22232 34566666554 444


Q ss_pred             cCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccC-CcCcccCCcCCCCCC-Ccceecccccccc
Q 003199          149 SVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYD-NSLTGEVPQDLGQWS-PLVVLDLSENKLS  226 (840)
Q Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~l~-~L~~L~L~~N~l~  226 (840)
                      +.|+++.+.|..|..+++|++|++++|+|....+..+....++..|++.+ |++..+.+..|..+. .++.|+|++|+|+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            55666655566666666666666666666655555555555566666644 455544444454443 3555566665555

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.87  E-value=2.1e-22  Score=209.79  Aligned_cols=165  Identities=15%  Similarity=0.103  Sum_probs=124.0

Q ss_pred             cCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCc--------hhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASD--------TDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~--------~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      |...+.||+|+||.||+|...+|+.||||++...........        .+.......+.+|++++++++  | +++.+
T Consensus        92 ~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~  168 (282)
T 1zar_A           92 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPK  168 (282)
T ss_dssp             SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCC
T ss_pred             EEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCe
Confidence            445689999999999999878899999999854332111000        011124567899999999999  4 66666


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeec
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVAD  679 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D  679 (840)
                      ++.. ...++||||+++|+|.+ +..       .....++.|++.||+|||+   .+|+||||||+|||++ ++.+||+|
T Consensus       169 ~~~~-~~~~lvmE~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH~---~giiHrDlkp~NILl~-~~~vkl~D  235 (282)
T 1zar_A          169 VYAW-EGNAVLMELIDAKELYR-VRV-------ENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVS-EEGIWIID  235 (282)
T ss_dssp             EEEE-ETTEEEEECCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEE-TTEEEECC
T ss_pred             EEec-cceEEEEEecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHHH---CCCEeCCCCHHHEEEE-CCcEEEEE
Confidence            5543 56699999999999988 422       2355799999999999999   9999999999999999 99999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCcccccc----------CCCCccccchh
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS----------SKATTKCDVYS  724 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----------~~~~~~~Dv~s  724 (840)
                      ||+|+.                +..|+|||++..          ..+...+|+|.
T Consensus       236 FG~a~~----------------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~  274 (282)
T 1zar_A          236 FPQSVE----------------VGEEGWREILERDVRNIITYFSRTYRTEKDINS  274 (282)
T ss_dssp             CTTCEE----------------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             CCCCeE----------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence            999853                335788997643          34455556654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.8e-20  Score=186.69  Aligned_cols=181  Identities=20%  Similarity=0.191  Sum_probs=108.0

Q ss_pred             cEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccc
Q 003199          168 RVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN  247 (840)
Q Consensus       168 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n  247 (840)
                      +.++++++.++.++...   .++|++|+|++|++++..+..|..+++|++|+|++|++++                    
T Consensus        10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------   66 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--------------------   66 (208)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--------------------
T ss_pred             CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--------------------
Confidence            45566666665433222   3456666666666665555555666666666666666552                    


Q ss_pred             cccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccch
Q 003199          248 MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPS  327 (840)
Q Consensus       248 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  327 (840)
                          ..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+.
T Consensus        67 ----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           67 ----LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             ----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ----cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence                2333455566666666666666644444556666666666666666665555566666666666666666655554


Q ss_pred             hhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccC
Q 003199          328 EIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKS  382 (840)
Q Consensus       328 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  382 (840)
                      .+..+++|+.|+|++|.+.+       .+++|+.|+++.|+++|.+|..++.++.
T Consensus       143 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             HhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            55666666666666665543       3445666666666666666666665544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.8e-20  Score=212.95  Aligned_cols=187  Identities=29%  Similarity=0.449  Sum_probs=105.4

Q ss_pred             CCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccc
Q 003199          142 ELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLS  221 (840)
Q Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~  221 (840)
                      +|+.|+|++|.+++ +|..+.  ++|++|+|++|+|+.+ |   ..+++|++|+|++|+|++ +|. +..  +|+.|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56666666666664 444332  5566666666666532 2   234555555555555553 333 332  45555555


Q ss_pred             cccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccC
Q 003199          222 ENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI  301 (840)
Q Consensus       222 ~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  301 (840)
                      +|+|++                         +|.   .+++|+.|++++|+|++ +|.                      
T Consensus       129 ~N~l~~-------------------------lp~---~l~~L~~L~Ls~N~l~~-lp~----------------------  157 (571)
T 3cvr_A          129 NNQLTM-------------------------LPE---LPALLEYINADNNQLTM-LPE----------------------  157 (571)
T ss_dssp             SSCCSC-------------------------CCC---CCTTCCEEECCSSCCSC-CCC----------------------
T ss_pred             CCcCCC-------------------------CCC---cCccccEEeCCCCccCc-CCC----------------------
Confidence            554441                         111   23444455555554442 332                      


Q ss_pred             CcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCcccc-------chhcccCCccCCCcc
Q 003199          302 ANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKL-------NLLMLQSNKLNSSIP  374 (840)
Q Consensus       302 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~~  374 (840)
                           .+++|+.|+|++|+|++ +|. +.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|
T Consensus       158 -----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp  223 (571)
T 3cvr_A          158 -----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIP  223 (571)
T ss_dssp             -----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCC
T ss_pred             -----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecC
Confidence                 24455555555555553 333 33  56666666666666 4444 443  55       88888888887 567


Q ss_pred             hhcccccCCCEEECcCccccccCCchhhcc
Q 003199          375 NSLSSLKSLNVLDLSNNLLTGYIPESLCEL  404 (840)
Q Consensus       375 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  404 (840)
                      ..+..+++|+.|+|++|+|++.+|..+..+
T Consensus       224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          224 ENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             GGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            777778888888888888888888877765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=5.2e-20  Score=183.29  Aligned_cols=162  Identities=26%  Similarity=0.245  Sum_probs=99.3

Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEE
Q 003199           92 TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ  171 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (840)
                      ++|++|+|++|++++..+..|..+++|++|+|++|+ +.+..+..|..+++|++|+|++|++++..+..|..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            356666666666664444455666666666666665 2333333456666666666666666655555566666677777


Q ss_pred             eeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccc
Q 003199          172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSG  251 (840)
Q Consensus       172 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~  251 (840)
                      |++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+.+       .+++|++|.++.|.+.|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence            77776666666666666777777777777765555556667777777777776542       33456666666666666


Q ss_pred             cCCccccccc
Q 003199          252 VLPDSLARCK  261 (840)
Q Consensus       252 ~~~~~~~~l~  261 (840)
                      .+|..++.++
T Consensus       180 ~ip~~~~~l~  189 (208)
T 2o6s_A          180 VVRNSAGSVA  189 (208)
T ss_dssp             TBBCTTSSBC
T ss_pred             eeeccCcccc
Confidence            6666555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.1e-19  Score=206.51  Aligned_cols=178  Identities=25%  Similarity=0.348  Sum_probs=89.8

Q ss_pred             CCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEE
Q 003199           18 NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDL   97 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   97 (840)
                      +|+.|+|++|+|++ +|..+.  ++|+.|+|++|   .+..+|    ..+++|++|+|++|.+++ +|. +..  +|++|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N---~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQN---ALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHL  125 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSS---CCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCC---CCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence            56666666666663 454442  56666666666   344444    234556666666666654 444 443  56666


Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccc
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL  177 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  177 (840)
                      +|++|+|++ +|.   .+++|+.|+|++|+ + ..+|.   .+++|++|+|++|+|++ +|. |.  ++|+.|+|++|+|
T Consensus       126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-l-~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          126 DVDNNQLTM-LPE---LPALLEYINADNNQ-L-TMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSC-C-SCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred             ECCCCcCCC-CCC---cCccccEEeCCCCc-c-CcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence            666666653 333   45555555555554 2 22443   34555555555555553 333 33  5555555555555


Q ss_pred             ccccchhhhcCCCC-------CEEEccCCcCcccCCcCCCCCCCcceeccccccccc
Q 003199          178 SGEISSVIANSTTL-------TMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG  227 (840)
Q Consensus       178 ~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  227 (840)
                      +.+ |. |..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++
T Consensus       193 ~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          193 ESL-PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             SSC-CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             Cch-hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence            522 22 222  33       55555555554 234444444555555555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=5.9e-20  Score=211.18  Aligned_cols=193  Identities=24%  Similarity=0.282  Sum_probs=132.4

Q ss_pred             CCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCc
Q 003199           16 MQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLT   95 (840)
Q Consensus        16 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   95 (840)
                      +.++..+.|+.+.+++..+  +..|++|+.|+|++|   .+..++  .+..+++|+.|+|++|.+.+..|  +..+++|+
T Consensus        20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n---~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~   90 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS---DIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLG   90 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTC---CCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCC
T ss_pred             HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCC---CCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCC
Confidence            3445566677777664433  556777777888777   444444  36777777777777777775443  77777777


Q ss_pred             EEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecc
Q 003199           96 DLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN  175 (840)
Q Consensus        96 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  175 (840)
                      .|+|++|.|++ +| .+..+++|+.|+|++|+ +. .+ ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|
T Consensus        91 ~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~-l~-~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A           91 WLFLDENKIKD-LS-SLKDLKKLKSLSLEHNG-IS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             EEECCSSCCCC-CT-TSTTCTTCCEEECTTSC-CC-CC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred             EEECcCCCCCC-Ch-hhccCCCCCEEEecCCC-CC-CC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence            77777777773 33 57777777777777776 22 23 3466777777777777777754  56777777777777777


Q ss_pred             ccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccccc
Q 003199          176 SLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGP  228 (840)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  228 (840)
                      .|.+..+  +..+++|++|+|++|+|++.  ..+..+++|+.|+|++|++.+.
T Consensus       164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            7776555  77777777777777777753  3567777777777777777643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.2e-19  Score=190.31  Aligned_cols=190  Identities=24%  Similarity=0.282  Sum_probs=131.5

Q ss_pred             CCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEE
Q 003199           18 NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDL   97 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   97 (840)
                      ++..+.+..+.+++..+  +..+++|+.|++++|   .+..++  .+..+++|++|+|++|.+++..+  +..+++|++|
T Consensus        25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~---~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L   95 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS---DIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWL   95 (291)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTS---CCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HHHHHHhcCCCcccccc--hhhcCcccEEEccCC---CcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEE
Confidence            34445566666653322  456777777777777   444443  36677777777777777775433  7777778888


Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccc
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL  177 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  177 (840)
                      +|++|++++ +| .+..+++|++|+|++|+ +. .+ ..+..+++|++|+|++|++++.  ..+..+++|+.|++++|++
T Consensus        96 ~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~-i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A           96 FLDENKVKD-LS-SLKDLKKLKSLSLEHNG-IS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             ECCSSCCCC-GG-GGTTCTTCCEEECTTSC-CC-CC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             ECCCCcCCC-Ch-hhccCCCCCEEECCCCc-CC-CC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence            888887774 33 47777778888887776 22 23 3567777788888888887754  5677778888888888887


Q ss_pred             ccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccc
Q 003199          178 SGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG  227 (840)
Q Consensus       178 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  227 (840)
                      ++..+  +..+++|++|+|++|++++. + .+..+++|+.|++++|+++.
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            76554  77778888888888887743 3 47777788888888887764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=1.2e-19  Score=181.90  Aligned_cols=136  Identities=24%  Similarity=0.295  Sum_probs=108.3

Q ss_pred             cCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEc
Q 003199          261 KNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDL  340 (840)
Q Consensus       261 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  340 (840)
                      ++|+.|++++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+|+++.+..|..+++|+.|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            56778888888887666667777888888888888888777778888888888888888888665556677888888888


Q ss_pred             CCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCcccccc
Q 003199          341 SDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGY  396 (840)
Q Consensus       341 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  396 (840)
                      ++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            88888877777888888888888888888877777788888888888888888754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=2.4e-19  Score=206.07  Aligned_cols=184  Identities=23%  Similarity=0.304  Sum_probs=158.0

Q ss_pred             CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCC
Q 003199           12 DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNV   91 (840)
Q Consensus        12 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   91 (840)
                      .+..|++|+.|+|++|.|+ .+| .+..+++|+.|+|++|   .+..+++  +..+++|+.|+|++|.+.+.  ..+..+
T Consensus        38 ~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N---~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l  108 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGN---KLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDL  108 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTS---CCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTC
T ss_pred             chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCC---CCCCChh--hccCCCCCEEECcCCCCCCC--hhhccC
Confidence            3567899999999999998 555 5899999999999999   5666665  89999999999999999853  479999


Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEE
Q 003199           92 TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ  171 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (840)
                      ++|++|+|++|.|++ + ..+..+++|+.|+|++|+ +. .+ ..+..+++|+.|+|++|.|++..|  +..+++|+.|+
T Consensus       109 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~-l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~  181 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNK-IT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  181 (605)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSC-CC-CC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCc-cC-Cc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence            999999999999995 3 469999999999999998 33 33 678999999999999999997665  99999999999


Q ss_pred             eeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCC
Q 003199          172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWS  213 (840)
Q Consensus       172 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~  213 (840)
                      |++|+|++.  ..+..+++|+.|+|++|++.......+..+.
T Consensus       182 Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~  221 (605)
T 1m9s_A          182 LSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLV  221 (605)
T ss_dssp             CCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCE
T ss_pred             CcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEE
Confidence            999999975  4689999999999999999865444444433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=2.2e-19  Score=180.10  Aligned_cols=137  Identities=20%  Similarity=0.234  Sum_probs=106.2

Q ss_pred             CCceEEeeCceeeccCC-ccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEc
Q 003199          262 NLLRFRVSNNHLEGSIP-EGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDL  340 (840)
Q Consensus       262 ~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  340 (840)
                      .+++|+|++|+|++..+ ..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            45677788887776544 34667778888888888887777777788888888888888887777777777888888888


Q ss_pred             CCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          341 SDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       341 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      ++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            8888887777778888888888888888887777888888888888888888876554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.4e-19  Score=189.81  Aligned_cols=175  Identities=24%  Similarity=0.312  Sum_probs=152.6

Q ss_pred             CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCC
Q 003199           12 DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNV   91 (840)
Q Consensus        12 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   91 (840)
                      .+..+++|++|++++|.++ .++ .+..+++|++|+|++|   .+..+++  +..+++|+.|++++|.+++.  ..+..+
T Consensus        41 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n---~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l  111 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGN---KLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDL  111 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSS---CCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTC
T ss_pred             chhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCC---ccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccC
Confidence            3567889999999999999 445 4899999999999999   5666665  89999999999999999863  349999


Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEE
Q 003199           92 TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ  171 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (840)
                      ++|++|+|++|++++.  ..+..+++|+.|++++|+ +. .+ ..+..+++|++|+|++|.+++..+  +..+++|+.|+
T Consensus       112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~-l~-~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  184 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNK-IT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  184 (291)
T ss_dssp             TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSC-CC-CC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCc-CC-cc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence            9999999999999953  579999999999999998 33 33 578999999999999999997654  99999999999


Q ss_pred             eeccccccccchhhhcCCCCCEEEccCCcCccc
Q 003199          172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLTGE  204 (840)
Q Consensus       172 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  204 (840)
                      |++|.+++..  .+..+++|+.|++++|+++..
T Consensus       185 L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          185 LSKNHISDLR--ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCSSCCCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred             CCCCcCCCCh--hhccCCCCCEEECcCCcccCC
Confidence            9999999653  489999999999999999853

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=3.2e-19  Score=193.56  Aligned_cols=176  Identities=24%  Similarity=0.222  Sum_probs=93.8

Q ss_pred             CEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCccccc-ccccccEEEecCccccccCCccccCCCCCcEEE
Q 003199           20 RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF-RLTKLRIMVLATCALHGQIPASIGNVTSLTDLE   98 (840)
Q Consensus        20 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   98 (840)
                      +++++++++++ .+|..+.  ..++.|+|++|   .+..++...|. .+++|+.|+|++|.|++..+..|.++++|++|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N---~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHN---NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSS---CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCC---CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            56777777777 5565443  34666777766   45555555555 555666666666665555555555555555555


Q ss_pred             ccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccc
Q 003199           99 LTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS  178 (840)
Q Consensus        99 L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  178 (840)
                      |++|+|+...+..|..+++|+.|+|++|                         +|+.+.+..|..+++|+.|+|++|+|+
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-------------------------~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNN-------------------------HIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSS-------------------------CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCC-------------------------cccEECHHHhCCcccCCEEECCCCcCC
Confidence            5555555444444555555555555555                         444444444444444444444444444


Q ss_pred             cccchhh---hcCCCCCEEEccCCcCcccCCcCCCCCCC--cceecccccccc
Q 003199          179 GEISSVI---ANSTTLTMLSLYDNSLTGEVPQDLGQWSP--LVVLDLSENKLS  226 (840)
Q Consensus       179 ~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~l~~l~~--L~~L~L~~N~l~  226 (840)
                      .+.+..|   ..+++|++|+|++|+|+.+.+..+..++.  |+.|+|++|++.
T Consensus       150 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            4333333   33555555555555555333334444444  355666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=7.9e-19  Score=177.27  Aligned_cols=137  Identities=22%  Similarity=0.210  Sum_probs=109.5

Q ss_pred             cCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEc
Q 003199          261 KNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDL  340 (840)
Q Consensus       261 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  340 (840)
                      ++|++|+|++|.+++..|..|..+++|+.|+|++|+++...+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            67888888888888777777788888888888888887777777788888888888888888666666777888888888


Q ss_pred             CCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          341 SDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       341 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      ++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            888887 677777888888888888888887666778888888888888888886654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.3e-18  Score=174.32  Aligned_cols=152  Identities=19%  Similarity=0.289  Sum_probs=89.3

Q ss_pred             CEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEc
Q 003199           20 RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLEL   99 (840)
Q Consensus        20 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   99 (840)
                      +.++++++.++ .+|..+.  ++|++|+|++|   .+..+++                        ..|..+++|++|+|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n---~i~~i~~------------------------~~~~~l~~L~~L~L   63 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQN---TIKVIPP------------------------GAFSPYKKLRRIDL   63 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSS---CCCEECT------------------------TSSTTCTTCCEEEC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCC---cCCCcCH------------------------hHhhCCCCCCEEEC
Confidence            45666666666 4554433  45555555555   3444444                        44555555555555


Q ss_pred             cCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccccc
Q 003199          100 TGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG  179 (840)
Q Consensus       100 ~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  179 (840)
                      ++|+|++..|..|..+++|++|+|++|+ +....+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++
T Consensus        64 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           64 SNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             CSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence            5555554445555555555555555554 222222335566666666666666666666666667777777777777766


Q ss_pred             ccchhhhcCCCCCEEEccCCcCc
Q 003199          180 EISSVIANSTTLTMLSLYDNSLT  202 (840)
Q Consensus       180 ~~~~~~~~l~~L~~L~L~~N~l~  202 (840)
                      +.+..|..+++|++|+|++|++.
T Consensus       143 ~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          143 IAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666777777777777777765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=6.9e-19  Score=190.98  Aligned_cols=177  Identities=24%  Similarity=0.205  Sum_probs=146.6

Q ss_pred             cEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhh-cCCCCCeeecccCccccccCCcccCCCCCCCeeecc
Q 003199           71 RIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIG-LLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMS  149 (840)
Q Consensus        71 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~  149 (840)
                      ++++++++.++ .+|..+.  ..++.|+|++|+|++..+..|. .+++|+.|+|++|+ +.+..+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECC
Confidence            45677777766 3555443  3578888888888877777777 88888888888887 455556678899999999999


Q ss_pred             CCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCC---CCCCCcceecccccccc
Q 003199          150 VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDL---GQWSPLVVLDLSENKLS  226 (840)
Q Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~  226 (840)
                      +|+|+.+.+..|..+++|++|+|++|+|+.+.+..|.++++|++|+|++|+|+.+.+..|   ..+++|+.|+|++|+|+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999998878889999999999999999999989999999999999999999997555555   56999999999999999


Q ss_pred             ccCCccccCCCC--chhhhcccccccc
Q 003199          227 GPLPAKVCSRGK--LQYFLVLQNMFSG  251 (840)
Q Consensus       227 ~~~~~~~~~l~~--L~~L~l~~n~~~~  251 (840)
                      +..+..+..++.  ++.|++.+|.+..
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccC
Confidence            877778888887  4889999998864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2.2e-18  Score=172.79  Aligned_cols=152  Identities=18%  Similarity=0.228  Sum_probs=87.2

Q ss_pred             CEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCC-cccccccccccEEEecCccccccCCccccCCCCCcEEE
Q 003199           20 RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP-ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLE   98 (840)
Q Consensus        20 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   98 (840)
                      +.+++++|.++ .+|..+.  ..+++|+|++|   .+..++ ...|..+++|+.|+|++|.+++..+..|.++++|++|+
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N---~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNN---EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSS---CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCC---cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            57888888887 5666553  34577777777   455542 34456666666666666666655555666666666666


Q ss_pred             ccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccc
Q 003199           99 LTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS  178 (840)
Q Consensus        99 L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  178 (840)
                      |++|+|++..+..|..+++|++|+|++|+ +.+..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+.
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            66666665545555555555555555554 33333444555555555555555555444444444555555555444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.77  E-value=3.4e-21  Score=220.27  Aligned_cols=107  Identities=24%  Similarity=0.328  Sum_probs=61.0

Q ss_pred             ccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccC
Q 003199          287 VSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS  366 (840)
Q Consensus       287 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  366 (840)
                      |+.|+|++|+|+++ |. |+.+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++ +| .++.+++|+.|+|++
T Consensus       443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            45555555555542 32 555555555555555555 445555556666666666666654 34 555566666666666


Q ss_pred             CccCCCc-chhcccccCCCEEECcCccccccCC
Q 003199          367 NKLNSSI-PNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       367 N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      |+|++.. |..|..+++|+.|+|++|+|++.+|
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            6665554 5566666666666666666664433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=2.6e-19  Score=184.84  Aligned_cols=151  Identities=21%  Similarity=0.292  Sum_probs=88.2

Q ss_pred             ccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCC
Q 003199           64 IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL  143 (840)
Q Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L  143 (840)
                      +..+++|+.|++++|.++. ++ .+..+++|++|+|++|+|++..+  +..+++|+.|+|++|+  ...+|.. .. ++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~--l~~l~~~-~~-~~L  108 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR--LKNLNGI-PS-ACL  108 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC--CSCCTTC-CC-SSC
T ss_pred             hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc--cCCcCcc-cc-Ccc
Confidence            3344444444444444432 22 34445555555555555553222  5555555555555554  2223322 22 667


Q ss_pred             CeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccc
Q 003199          144 TDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN  223 (840)
Q Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N  223 (840)
                      ++|+|++|++++.  ..+..+++|+.|+|++|++++..  .+..+++|++|+|++|++++.  ..+..+++|+.|++++|
T Consensus       109 ~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          109 SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred             cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence            7777777777643  24667777777777777776542  567777777777777777754  56777777777777777


Q ss_pred             ccccc
Q 003199          224 KLSGP  228 (840)
Q Consensus       224 ~l~~~  228 (840)
                      ++++.
T Consensus       183 ~~~~~  187 (263)
T 1xeu_A          183 KCVNE  187 (263)
T ss_dssp             EEECC
T ss_pred             cccCC
Confidence            77644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=8.7e-19  Score=171.67  Aligned_cols=174  Identities=19%  Similarity=0.248  Sum_probs=134.0

Q ss_pred             ceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCc-ccCCCCCCceeecccceeeeccchhhcccCcccEEEcCC
Q 003199          264 LRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIAN-TVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSD  342 (840)
Q Consensus       264 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  342 (840)
                      +.+++++|+++ .+|..+..  +|+.|++++|++++..+. .|+.+++|++|+|++|+|++..|..|..+++|+.|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67888888887 67776544  889999999999877764 588899999999999999988888999999999999999


Q ss_pred             CccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhccCCCeEEccCCCCcCcCCc
Q 003199          343 NLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPL  422 (840)
Q Consensus       343 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~p~  422 (840)
                      |+|++..+..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+.......+....+.++...+..|.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            99998888889999999999999999998889999999999999999999998776432211112223445555555565


Q ss_pred             ccccCCCcccccCCCCCcc
Q 003199          423 SLIKEGLVESFSGNPGLCV  441 (840)
Q Consensus       423 ~~~~~~~~~~~~~n~~~c~  441 (840)
                      .+... ....+..+...|.
T Consensus       168 ~l~~~-~l~~l~~~~~~C~  185 (192)
T 1w8a_A          168 KVRDV-QIKDLPHSEFKCS  185 (192)
T ss_dssp             TTTTS-BGGGSCTTTCCCC
T ss_pred             HHcCC-ChhhCcHhhcCcC
Confidence            44332 3334555555564

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=3e-19  Score=184.35  Aligned_cols=171  Identities=20%  Similarity=0.236  Sum_probs=144.7

Q ss_pred             CCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCC
Q 003199           15 PMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSL   94 (840)
Q Consensus        15 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   94 (840)
                      .+.++..+++++|.++ .++ .+..+++|+.|++++|   .+..++  .+..+++|+.|+|++|.+++..+  +..+++|
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n---~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L   87 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNS---NIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKL   87 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTS---CCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred             HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCC---Ccccch--HHhhCCCCCEEECCCCccCCChh--hccCCCC
Confidence            5677888999999998 444 6889999999999999   566665  58899999999999999986544  9999999


Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeec
Q 003199           95 TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN  174 (840)
Q Consensus        95 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  174 (840)
                      ++|+|++|++++ +|.. .. ++|+.|+|++|+ +. .++ .+..+++|++|+|++|++++. + .+..+++|+.|+|++
T Consensus        88 ~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~-l~-~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           88 EELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNE-LR-DTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHG  159 (263)
T ss_dssp             CEEECCSSCCSC-CTTC-CC-SSCCEEECCSSC-CS-BSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTT
T ss_pred             CEEECCCCccCC-cCcc-cc-CcccEEEccCCc-cC-CCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCC
Confidence            999999999995 4433 33 999999999998 33 343 688999999999999999964 3 688999999999999


Q ss_pred             cccccccchhhhcCCCCCEEEccCCcCccc
Q 003199          175 NSLSGEISSVIANSTTLTMLSLYDNSLTGE  204 (840)
Q Consensus       175 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  204 (840)
                      |++++.  ..+..+++|+.|++++|++...
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            999876  6789999999999999999854

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.3e-18  Score=169.54  Aligned_cols=152  Identities=22%  Similarity=0.297  Sum_probs=70.4

Q ss_pred             CCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCC
Q 003199           15 PMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSL   94 (840)
Q Consensus        15 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   94 (840)
                      .+++|++|++++|.|+ .+| .+..+++|++|++++|   .+..++  .+..+++|++|++++|.+++..+..++.+++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n---~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI---HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC---CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC---CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            3445555555555555 334 3555555555555555   232222  34445555555555555554444455555555


Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeec
Q 003199           95 TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN  174 (840)
Q Consensus        95 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  174 (840)
                      ++|+|++|++++..|..+..+++|++|+|++|+. .+.+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~-i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-ITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB-CCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC-ccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence            5555555555544444455555555555554431 11222 34444444444444444442 11 333444444444444


Q ss_pred             ccc
Q 003199          175 NSL  177 (840)
Q Consensus       175 N~l  177 (840)
                      |+|
T Consensus       191 N~i  193 (197)
T 4ezg_A          191 QTI  193 (197)
T ss_dssp             C--
T ss_pred             ccc
Confidence            443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=2.8e-19  Score=191.52  Aligned_cols=221  Identities=9%  Similarity=0.045  Sum_probs=141.4

Q ss_pred             CCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccc----ccccCCccccCCCCc
Q 003199          164 LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENK----LSGPLPAKVCSRGKL  239 (840)
Q Consensus       164 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L  239 (840)
                      +++|+.|+|.+ .++.+...+|.++++|++|++++|.+..+.+.+|.++.++..+.+..+.    ........|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            66666666666 5555556666666666666666666655555666665555555554422    122223334333333


Q ss_pred             h-hhhccccc-ccccCCcccccccCCceEEeeCceeeccCCcccc-CCCcccEEeccCCcccccCCcccCCCCCCceeec
Q 003199          240 Q-YFLVLQNM-FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGIL-SLPHVSIIDLSYNSFSGPIANTVGNARNLSELFM  316 (840)
Q Consensus       240 ~-~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  316 (840)
                      + .+.+.... +.......-....++..+.+.++-.. .....+. .+++|+.|+|++|+++.+...+|.++++|++|+|
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence            3 12111110 00000000112345566666554222 1111111 2678999999998898888888999999999999


Q ss_pred             ccceeeeccchhhcccCccc-EEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEEC
Q 003199          317 QRNQISGFIPSEIYRAISLV-KIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDL  388 (840)
Q Consensus       317 ~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  388 (840)
                      .+| ++.+.+.+|.++.+|+ .+++.+ .++...+.+|.++++|+.|++++|.++.+.+.+|.++++|+.|+.
T Consensus       258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            888 7777788888899998 999988 777667788999999999999999998777889999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=6.6e-21  Score=217.88  Aligned_cols=190  Identities=24%  Similarity=0.232  Sum_probs=95.1

Q ss_pred             CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCC----------ccCCCCcccccccccccEEE-ecCcccc
Q 003199           13 FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGF----------KLWKLPESSIFRLTKLRIMV-LATCALH   81 (840)
Q Consensus        13 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~----------~l~~l~~~~~~~l~~L~~L~-L~~n~l~   81 (840)
                      +..+++|+.|+|++|.++ .+|..++++++|++|++++|...          .....++..+..+++|+.|+ ++.|.+.
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            467788888888888887 78888888888888888666100          01112222333333333333 2222211


Q ss_pred             ccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccc
Q 003199           82 GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI  161 (840)
Q Consensus        82 ~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  161 (840)
                                 +|+.+.+++|.|+.. |.     ..|+.|+|++|+  ...+|. ++.+++|+.|+|++|.|+ .+|..|
T Consensus       424 -----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~--l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~  482 (567)
T 1dce_A          424 -----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKD--LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPAL  482 (567)
T ss_dssp             -----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSC--CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred             -----------hhhhhhhhccccccc-Cc-----cCceEEEecCCC--CCCCcC-ccccccCcEeecCccccc-ccchhh
Confidence                       122222223333211 10     134555555554  122343 455555555555555555 344455


Q ss_pred             cCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccC-CcCCCCCCCcceecccccccc
Q 003199          162 LRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEV-PQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       162 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      ..+++|+.|+|++|+|+++ | .+.++++|++|+|++|+|++.. |..+..+++|+.|+|++|+++
T Consensus       483 ~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          483 AALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             GGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             hcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            5555555555555555532 2 4455555555555555555443 445555555555555555554

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.75  E-value=9e-19  Score=180.15  Aligned_cols=146  Identities=19%  Similarity=0.231  Sum_probs=108.1

Q ss_pred             cCccCeeeccCCcEEEEEEe-CCCcE--EEEEEecccccccccCc--------------hhhHHHHHHHHHHHHHHhccC
Q 003199          528 MTEKNKVGQGGSGTVYKIDL-NSGEV--VAVKKLWSQRTKVSASD--------------TDQLQLDKGLKTEVETLGNIR  590 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~~~~~~--------------~~~~~~~~~~~~E~~~l~~l~  590 (840)
                      |...+.||+|+||.||+|.. .+|+.  ||||+++..........              .........+.+|+.++.++.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            45667899999999999977 67989  99998754321110000              001223356889999999998


Q ss_pred             CCCc--ceeeeEEecCccceEEEeecCC-C----ChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHh-hcCCCCeEecCC
Q 003199          591 HKNI--VKLYCYFSSLYCNLLVYEYMPN-G----NLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH-HGLLSPIIHRDI  662 (840)
Q Consensus       591 h~ni--v~l~~~~~~~~~~~lV~e~~~~-g----sL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH-~~~~~~ivH~Dl  662 (840)
                      |+++  ..++++    ...++||||+.+ |    +|.+....    .++..+..++.|++.|+.||| +   .+||||||
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~~---~givHrDl  197 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQE---AELVHADL  197 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHHT---SCEECSSC
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHHH---CCEEeCCC
Confidence            8864  334432    366899999942 4    66665432    235678899999999999999 8   89999999


Q ss_pred             CCCCEEEcCCCCCeeecccchhhh
Q 003199          663 KSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       663 k~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      ||+|||++.  .++|+|||+|...
T Consensus       198 kp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          198 SEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             STTSEEESS--SEEECCCTTCEET
T ss_pred             CHHHEEEcC--cEEEEECcccccC
Confidence            999999998  9999999999654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=9.5e-18  Score=169.30  Aligned_cols=153  Identities=24%  Similarity=0.286  Sum_probs=84.1

Q ss_pred             CCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEE
Q 003199           19 LRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLE   98 (840)
Q Consensus        19 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   98 (840)
                      -+.++++++.++ .+|..+.  ++|++|+|++|                           .+.+..|..|.++++|++|+
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n---------------------------~i~~~~~~~~~~l~~L~~L~   70 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDN---------------------------QITKLEPGVFDSLINLKELY   70 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSS---------------------------CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCC---------------------------ccCccCHHHhhCccCCcEEE
Confidence            455666666666 5554332  55555555555                           44444444455555555555


Q ss_pred             ccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccc
Q 003199           99 LTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS  178 (840)
Q Consensus        99 L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  178 (840)
                      |++|+|+...+..|..+++|+.|+|++|+ +.+..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|+
T Consensus        71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             CCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            55555543333444555555555555554 22222334455556666666666665 44555566666666666666666


Q ss_pred             cccchhhhcCCCCCEEEccCCcCcc
Q 003199          179 GEISSVIANSTTLTMLSLYDNSLTG  203 (840)
Q Consensus       179 ~~~~~~~~~l~~L~~L~L~~N~l~~  203 (840)
                      +..+..|..+++|++|+|++|.+..
T Consensus       149 ~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          149 SIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             ccCHHHHhCCCCCCEEEeeCCCccC
Confidence            5555556666666666666666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=4.4e-18  Score=167.54  Aligned_cols=134  Identities=17%  Similarity=0.187  Sum_probs=103.3

Q ss_pred             ccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcc
Q 003199          256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISL  335 (840)
Q Consensus       256 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  335 (840)
                      .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..++.+++|++|+|++|++++..|..+..+++|
T Consensus        61 ~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            4667778888888888665  33467778888888888888887777778888888888888888887778888888888


Q ss_pred             cEEEcCCCc-cCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccc
Q 003199          336 VKIDLSDNL-LSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG  395 (840)
Q Consensus       336 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  395 (840)
                      +.|+|++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       139 ~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          139 NSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            888888887 65 444 57788888888888888875 33 67888888888888888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=3.9e-18  Score=182.63  Aligned_cols=265  Identities=13%  Similarity=0.071  Sum_probs=188.2

Q ss_pred             CCCCCEEecCCCcCc--ccCCccccCCCCCCEEeCCCCCCCccCCCCcccccc--------cccccEEEecCccccccCC
Q 003199           16 MQNLRRLDLSNNLFT--GQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFR--------LTKLRIMVLATCALHGQIP   85 (840)
Q Consensus        16 l~~L~~L~Ls~n~i~--~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~--------l~~L~~L~L~~n~l~~~~~   85 (840)
                      +++|++|||++|+|.  ...+..+   +.+..+.+..|      .++..+|.+        +++|+.|+|.+ .++.+.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~------~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~  117 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN------FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED  117 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT------EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred             hccCeEEecCcceeEEecCccccc---ccccccccccc------ccCHHHhcccccccccccCCCcEEECCc-cccchhH
Confidence            788999999999998  3333223   33556666666      567888999        99999999999 8888888


Q ss_pred             ccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCcc---ccccCCcccCCCCCCC-eeeccCCc-ccccCCcc
Q 003199           86 ASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ---LAGTIPEELGNLTELT-DLDMSVNH-LSGKIPES  160 (840)
Q Consensus        86 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~---~~~~~p~~l~~l~~L~-~L~L~~n~-l~~~~~~~  160 (840)
                      .+|.++++|+.|+|++|.+....+.+|....++..+.+..+..   .......+|.++..|+ .+.+.... +.......
T Consensus       118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~  197 (329)
T 3sb4_A          118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA  197 (329)
T ss_dssp             TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred             HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence            8999999999999999999878888999988888887765321   1111233455666666 44443322 11111111


Q ss_pred             ccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCch
Q 003199          161 ILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQ  240 (840)
Q Consensus       161 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  240 (840)
                      -....+++.+.+.++-...........+++|+.|+|++|+++.+.+.+|.++.+|+.|+|.+| ++.+.+.+|.++.+|+
T Consensus       198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence            123456677777665332111222234778888888888888777777888888888888877 7777777888888887


Q ss_pred             -hhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEec
Q 003199          241 -YFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDL  292 (840)
Q Consensus       241 -~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  292 (840)
                       .+.+.. .+..+.+.+|.++++|+.|++++|.++...+.+|.++++|+.+..
T Consensus       277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence             888877 676677888999999999999889888777778888888888753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=2.8e-18  Score=202.53  Aligned_cols=148  Identities=20%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             CCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccC
Q 003199          198 DNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSI  277 (840)
Q Consensus       198 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  277 (840)
                      .|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|+|+ .+
T Consensus       210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          210 ENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             -------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred             cccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence            33433 34445555555555555555555 22222223333333333333333 44555556666666666666665 55


Q ss_pred             CccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccC-cccEEEcCCCccCCCCC
Q 003199          278 PEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI-SLVKIDLSDNLLSGPIP  350 (840)
Q Consensus       278 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p  350 (840)
                      |..|..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.|++.+|..+..+. .+..|+|++|.+++.+|
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            555656666666666666555 3344455555555555555555555555443321 11224444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=4.9e-16  Score=169.73  Aligned_cols=268  Identities=12%  Similarity=0.157  Sum_probs=123.5

Q ss_pred             CCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCe
Q 003199           41 TNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ  120 (840)
Q Consensus        41 ~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~  120 (840)
                      ..++.+.+..+    +..++..+|.+. +|+.+.+..+ ++.+...+|.+. +|+.+.|.. .++...+.+|..+++|+.
T Consensus       113 ~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          113 KGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             SSCSEEECCTT----CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             CCccEEEECCc----cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            44555555433    444445555543 4555555444 444444455442 455555553 344344455555555555


Q ss_pred             eecccCccccccCCc-ccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCC
Q 003199          121 LELYYNQQLAGTIPE-ELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDN  199 (840)
Q Consensus       121 L~L~~n~~~~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  199 (840)
                      ++|..|+ +. .++. +|. ..+|+.+.|..+ ++.+...+|.++++|+.+++.+| ++.+...+|.+ .+|+.+.| .+
T Consensus       185 l~l~~n~-l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~  257 (401)
T 4fdw_A          185 ADLSKTK-IT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PN  257 (401)
T ss_dssp             EECTTSC-CS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ET
T ss_pred             eecCCCc-ce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CC
Confidence            5555444 12 2222 232 355555555532 44444455555555555555543 34444455555 45555555 23


Q ss_pred             cCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCc
Q 003199          200 SLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPE  279 (840)
Q Consensus       200 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  279 (840)
                      .++.+...+|.++++|+.+++.+|.+..                   +....+...+|.++++|+.+.+.+ .++.....
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~  317 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG  317 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTT
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhh
Confidence            3444445555555555555555554430                   000112333444444444444442 23333334


Q ss_pred             cccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccC-cccEEEcCCCcc
Q 003199          280 GILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI-SLVKIDLSDNLL  345 (840)
Q Consensus       280 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l  345 (840)
                      +|.++++|+.+.|..| ++.+...+|.++ +|+.+++++|.+....+..|..++ ++..|++..+.+
T Consensus       318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            4444444555544332 443444445444 455555555544443344444442 444555444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=7.3e-16  Score=168.39  Aligned_cols=268  Identities=11%  Similarity=0.108  Sum_probs=204.1

Q ss_pred             CCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCC
Q 003199           14 SPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTS   93 (840)
Q Consensus        14 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   93 (840)
                      ..+..++.+.+.++ ++.+...+|.+. +|+.+.|..|    +..++..+|.+. +|+.+.+.+ .++.+.+.+|.++.+
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~----i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~  181 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG----LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYN  181 (401)
T ss_dssp             EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT----CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTT
T ss_pred             EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC----ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCccc
Confidence            34578888888865 665778888885 7999999877    677888899884 799999986 777788889999999


Q ss_pred             CcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEee
Q 003199           94 LTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLY  173 (840)
Q Consensus        94 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  173 (840)
                      |+.++|.+|.++......|. ..+|+.+.|..+  +...-..+|.++++|+.+++..| ++.+...+|.+ .+|+.+.| 
T Consensus       182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-  255 (401)
T 4fdw_A          182 LKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-  255 (401)
T ss_dssp             CCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-
T ss_pred             CCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-
Confidence            99999999999976667777 589999999855  35555668999999999999975 66677788888 78999999 


Q ss_pred             ccccccccchhhhcCCCCCEEEccCCcCc-----ccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhccccc
Q 003199          174 NNSLSGEISSVIANSTTLTMLSLYDNSLT-----GEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM  248 (840)
Q Consensus       174 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~  248 (840)
                      .|.++.+...+|.++++|+.+++.+|.+.     .+.+.+|.++++|+.++|.+ .++.+..                  
T Consensus       256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~------------------  316 (401)
T 4fdw_A          256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ------------------  316 (401)
T ss_dssp             ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT------------------
T ss_pred             CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh------------------
Confidence            56677788999999999999999998875     46677888888888888884 4554333                  


Q ss_pred             ccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCC-CCceeecccceee
Q 003199          249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR-NLSELFMQRNQIS  322 (840)
Q Consensus       249 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~  322 (840)
                            .+|.++++|+.+.+.+| ++.....+|..+ +|+.+++.+|.+.......|.+++ +++.|++..+.+.
T Consensus       317 ------~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          317 ------GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ------TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             ------hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence                  45555666666666444 443445556665 666666666666655556666553 5666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=7e-18  Score=199.09  Aligned_cols=162  Identities=21%  Similarity=0.229  Sum_probs=109.6

Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccc
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL  177 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  177 (840)
                      ++..|.+. ..|..|..+++|+.|+|++|.  ...+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|.|
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQ--IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             ----------------CCCCCCEEECTTSC--CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCC--CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            44455555 567778888888888888887  3367777778888888888888888 6788888888888888888888


Q ss_pred             ccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCC-chhhhcccccccccCCcc
Q 003199          178 SGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGK-LQYFLVLQNMFSGVLPDS  256 (840)
Q Consensus       178 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~  256 (840)
                      + .+|..|.++++|++|+|++|.|+ .+|..|+.+++|+.|+|++|+|++.+|..+..+.. +..+++.+|.+.+.+|..
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            8 55777888888888888888887 56777888888999999999888887777765432 234677778777766653


Q ss_pred             cccccCCceEEeeCc
Q 003199          257 LARCKNLLRFRVSNN  271 (840)
Q Consensus       257 ~~~l~~L~~L~l~~N  271 (840)
                            |..|++++|
T Consensus       361 ------l~~l~l~~n  369 (727)
T 4b8c_D          361 ------RRFIEINTD  369 (727)
T ss_dssp             ---------------
T ss_pred             ------cceeEeecc
Confidence                  445556655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.69  E-value=1.1e-15  Score=167.88  Aligned_cols=334  Identities=8%  Similarity=-0.022  Sum_probs=171.0

Q ss_pred             CcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccC
Q 003199           29 FTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHI  108 (840)
Q Consensus        29 i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~  108 (840)
                      ++.+...+|.++.+|+.+.|..+    ++.+...+|.++++|+.++|.++ ++.+...+|.++.+|+.+.+..+ +....
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~  132 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG  132 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec
Confidence            44444555666666666666533    45555566666666666666543 44444556666666666555543 33244


Q ss_pred             chhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcC
Q 003199          109 PPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS  188 (840)
Q Consensus       109 p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  188 (840)
                      ..+|.....+........   ......+|.++++|+.+.+..+-.. +....|.++.+|+.+.+..| ++.+...+|.++
T Consensus       133 ~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~  207 (394)
T 4fs7_A          133 VEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC  207 (394)
T ss_dssp             TTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred             ceeeecccccccccCccc---cccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence            455555543333322222   1122345666666666666544332 45556666666666666555 444555666666


Q ss_pred             CCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEe
Q 003199          189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRV  268 (840)
Q Consensus       189 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  268 (840)
                      ..|+.+.+..+... + ...+....+|+.+.+..+ ++.+....|.....++.+.+..+.. ......|..+..++.+.+
T Consensus       208 ~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~  283 (394)
T 4fs7_A          208 ILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIY  283 (394)
T ss_dssp             TTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEE
T ss_pred             cccceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceecc
Confidence            66666666655443 2 222333455666655433 2223333444444444444433322 134445555566666555


Q ss_pred             eCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCC
Q 003199          269 SNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGP  348 (840)
Q Consensus       269 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  348 (840)
                      ..+.+.   ...|....+|+.+.+..+ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..| ++..
T Consensus       284 ~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I  357 (394)
T 4fs7_A          284 GSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI  357 (394)
T ss_dssp             CSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             Cceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence            554332   234555556666655543 44444555666666666666433 44444555555555666655544 4434


Q ss_pred             CCCcccCccccchhcccCCccCCCcchhcccccCCCE
Q 003199          349 IPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNV  385 (840)
Q Consensus       349 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  385 (840)
                      ...+|.++.+|+.+++..+ ++ .+..+|.++++|+.
T Consensus       358 ~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          358 GANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             CTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             hHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            4445555555665555443 22 23345555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=1.1e-16  Score=153.11  Aligned_cols=136  Identities=17%  Similarity=0.143  Sum_probs=117.2

Q ss_pred             cCCceEEeeCceee-ccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEE
Q 003199          261 KNLLRFRVSNNHLE-GSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKID  339 (840)
Q Consensus       261 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  339 (840)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|+|++|++++.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            67899999999997 67888888899999999999999876  7788899999999999999977888888899999999


Q ss_pred             cCCCccCCCC-CCcccCccccchhcccCCccCCCcc---hhcccccCCCEEECcCccccccCCc
Q 003199          340 LSDNLLSGPI-PSGIGNLKKLNLLMLQSNKLNSSIP---NSLSSLKSLNVLDLSNNLLTGYIPE  399 (840)
Q Consensus       340 Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~p~  399 (840)
                      |++|++++.. +..+..+++|+.|+|++|++++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999998643 2678899999999999999986655   58899999999999999987 4554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.66  E-value=2e-15  Score=165.80  Aligned_cols=319  Identities=11%  Similarity=0.031  Sum_probs=249.3

Q ss_pred             ccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCC
Q 003199           55 KLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP  134 (840)
Q Consensus        55 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p  134 (840)
                      .++++...+|.++.+|+.+.|.. .++.+-..+|.++.+|+.++|..+ ++.....+|..+++|+.+.+..+-  .....
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l--~~i~~  133 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML--KSIGV  133 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC--CEECT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce--eeecc
Confidence            57788899999999999999975 477787889999999999999866 665677899999999999887653  43444


Q ss_pred             cccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCC
Q 003199          135 EELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSP  214 (840)
Q Consensus       135 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~  214 (840)
                      .+|.+...+........  ..+...+|.++++|+.+.+.++- ..+...+|.++.+|+.+.+..| ++.+...+|.++..
T Consensus       134 ~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence            56777654443333332  33456789999999999998765 4477889999999999999887 66577889999999


Q ss_pred             cceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccC
Q 003199          215 LVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSY  294 (840)
Q Consensus       215 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~  294 (840)
                      |+.+.+..+...  +...+.....|+.+.+..+ +......+|..+.+|+.+.+..+... .....|.....++.+....
T Consensus       210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred             cceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence            999999877553  2333444466777766543 34455677888999999999888665 6677888888999888877


Q ss_pred             CcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcc
Q 003199          295 NSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP  374 (840)
Q Consensus       295 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~  374 (840)
                      +.+   ....|..+.+|+.+.+.++ ++.+...+|.++.+|+.++|..+ ++..-..+|.++.+|+.+++..| ++.+..
T Consensus       286 ~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~  359 (394)
T 4fs7_A          286 VIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA  359 (394)
T ss_dssp             SEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred             eee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence            654   3457888899999999776 66677788889999999999755 66566678999999999999877 776677


Q ss_pred             hhcccccCCCEEECcCc
Q 003199          375 NSLSSLKSLNVLDLSNN  391 (840)
Q Consensus       375 ~~~~~l~~L~~L~l~~N  391 (840)
                      .+|.++++|+.+++..|
T Consensus       360 ~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          360 NAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTBTTCTTCCEEEEEGG
T ss_pred             HHhhCCCCCCEEEECCC
Confidence            89999999999998754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=3.1e-16  Score=153.44  Aligned_cols=91  Identities=22%  Similarity=0.318  Sum_probs=50.1

Q ss_pred             cccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCccc
Q 003199          257 LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLV  336 (840)
Q Consensus       257 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  336 (840)
                      |..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+|++..|..+..+++|+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            44455555555555555544455555555555555555555555555555555555555555555555555555555555


Q ss_pred             EEEcCCCccCC
Q 003199          337 KIDLSDNLLSG  347 (840)
Q Consensus       337 ~L~Ls~N~l~~  347 (840)
                      .|+|++|++.+
T Consensus       130 ~L~L~~N~l~c  140 (192)
T 1w8a_A          130 SLNLASNPFNC  140 (192)
T ss_dssp             EEECTTCCBCC
T ss_pred             EEEeCCCCccC
Confidence            55555555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=5.7e-16  Score=149.53  Aligned_cols=133  Identities=23%  Similarity=0.262  Sum_probs=109.9

Q ss_pred             CceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCC
Q 003199          263 LLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSD  342 (840)
Q Consensus       263 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  342 (840)
                      .+.+++++|+++ .+|..+.  ++|+.|++++|++++..+..|+.+++|++|+|++|++++..+..+..+++|+.|+|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467888888887 5565443  6888899999988887777788888999999999998877667778888999999999


Q ss_pred             CccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          343 NLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       343 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      |++++..+..+..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99987777778888999999999999987767677888999999999999887665

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.64  E-value=9.6e-17  Score=170.60  Aligned_cols=146  Identities=13%  Similarity=0.096  Sum_probs=100.6

Q ss_pred             cCccCeeeccCCcEEEEEEeCCCcEEEEEEeccccccccc----Cc------h--hhHHHHHHHHHHHHHHhccCCCCcc
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSA----SD------T--DQLQLDKGLKTEVETLGNIRHKNIV  595 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~----~~------~--~~~~~~~~~~~E~~~l~~l~h~niv  595 (840)
                      |...+.||+|++|.||+|...+|+.||||+++........    ..      .  ..........+|+..+.++.+.++.
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~  176 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP  176 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7788899999999999998889999999998543221000    00      0  0001111223566666666544432


Q ss_pred             eeeeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCC-
Q 003199          596 KLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ-  674 (840)
Q Consensus       596 ~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~-  674 (840)
                      ...-+..  ...++||||++++.|.+...       .+....++.|++.+|.|||+   .|||||||||.|||+++++. 
T Consensus       177 vp~p~~~--~~~~LVME~i~G~~L~~l~~-------~~~~~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~~dgd~  244 (397)
T 4gyi_A          177 VPEPIAQ--SRHTIVMSLVDALPMRQVSS-------VPDPASLYADLIALILRLAK---HGLIHGDFNEFNILIREEKDA  244 (397)
T ss_dssp             CCCEEEE--ETTEEEEECCSCEEGGGCCC-------CSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEEEEECS
T ss_pred             CCeeeec--cCceEEEEecCCccHhhhcc-------cHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeCCCCc
Confidence            1111111  23479999999988865432       22356788999999999999   99999999999999988763 


Q ss_pred             ---------Ceeecccchhh
Q 003199          675 ---------PKVADFGIAKV  685 (840)
Q Consensus       675 ---------~kl~Dfg~a~~  685 (840)
                               +.|+||+-+..
T Consensus       245 ~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          245 EDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             SCTTSEEEEEEECCCTTCEE
T ss_pred             ccccccccceEEEEeCCccc
Confidence                     78999997644

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=7.3e-16  Score=150.71  Aligned_cols=130  Identities=26%  Similarity=0.325  Sum_probs=99.8

Q ss_pred             ceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCC
Q 003199          264 LRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDN  343 (840)
Q Consensus       264 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  343 (840)
                      +.+++++|.++ .+|..+.  ++|+.|+|++|+++ .+|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46777788777 5665543  57888888888887 34467777888888888888888777777888888888888888


Q ss_pred             ccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccC
Q 003199          344 LLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYI  397 (840)
Q Consensus       344 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  397 (840)
                      +|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            888777777888888888888888888666667888888888888888887543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=2.4e-16  Score=147.48  Aligned_cols=129  Identities=16%  Similarity=0.171  Sum_probs=112.2

Q ss_pred             ccCCceEEeeCceee-ccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEE
Q 003199          260 CKNLLRFRVSNNHLE-GSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKI  338 (840)
Q Consensus       260 l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  338 (840)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|++++.  ..++.+++|+.|+|++|++++.+|..+..+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            468899999999998 77888888999999999999999876  778889999999999999997788888889999999


Q ss_pred             EcCCCccCCC-CCCcccCccccchhcccCCccCCCcc---hhcccccCCCEEECcC
Q 003199          339 DLSDNLLSGP-IPSGIGNLKKLNLLMLQSNKLNSSIP---NSLSSLKSLNVLDLSN  390 (840)
Q Consensus       339 ~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~  390 (840)
                      ++++|++++. .+..++.+++|+.|++++|++++..+   ..+..+++|+.||+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999863 34778899999999999999987666   5788999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.2e-15  Score=145.85  Aligned_cols=132  Identities=24%  Similarity=0.266  Sum_probs=83.8

Q ss_pred             CCCCEEeCCCCCCCccC--CCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCC
Q 003199           41 TNLEVLSFNENPGFKLW--KLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNL  118 (840)
Q Consensus        41 ~~L~~L~L~~N~~~~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L  118 (840)
                      ++|++|+|++|   .+.  .+|. .+..+++|++|++++|.+++.  ..+..+++|++|+|++|++++.+|..+..+++|
T Consensus        24 ~~L~~L~l~~n---~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           24 AAVRELVLDNC---KSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TSCSEEECCSC---BCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             ccCCEEECCCC---CCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            44555555555   233  3332 245555566666666665543  556667777777777777775566666667777


Q ss_pred             CeeecccCccccccCC--cccCCCCCCCeeeccCCcccccCC---ccccCCCCCcEEEeeccccccc
Q 003199          119 RQLELYYNQQLAGTIP--EELGNLTELTDLDMSVNHLSGKIP---ESILRLPKLRVLQLYNNSLSGE  180 (840)
Q Consensus       119 ~~L~L~~n~~~~~~~p--~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~  180 (840)
                      +.|+|++|+ + ..+|  ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+...
T Consensus        98 ~~L~Ls~N~-l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           98 THLNLSGNK-L-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CEEECBSSS-C-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CEEeccCCc-c-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            777777776 2 2232  567777777888888887775444   3677778888888888877643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=2.4e-15  Score=147.02  Aligned_cols=126  Identities=25%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             EEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecc
Q 003199           96 DLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN  175 (840)
Q Consensus        96 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  175 (840)
                      .+++++|.++ .+|..+.  ++|+.|+|++|+  ...+|..|.++++|++|+|++|.|+++.+..|.++++|++|+|++|
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~--i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQ--FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSC--CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCc--CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4455555554 3333321  345555555554  2244455555556666666666666555555666666666666666


Q ss_pred             ccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccc
Q 003199          176 SLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      +|+++.+..|.++++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            666665666666666666666666666555555666666666666666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.3e-15  Score=142.46  Aligned_cols=127  Identities=23%  Similarity=0.301  Sum_probs=56.9

Q ss_pred             ccccEEEecCcccc-ccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCee
Q 003199           68 TKLRIMVLATCALH-GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDL  146 (840)
Q Consensus        68 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L  146 (840)
                      ++|+.|++++|.+. +.+|..+..+++|++|+|++|.+++.  ..+..+++|++|+|++|+ +.+.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEE
Confidence            34455555555554 34444555555555555555555532  344444444444444443 222233333334444444


Q ss_pred             eccCCccccc-CCccccCCCCCcEEEeeccccccccc---hhhhcCCCCCEEEcc
Q 003199          147 DMSVNHLSGK-IPESILRLPKLRVLQLYNNSLSGEIS---SVIANSTTLTMLSLY  197 (840)
Q Consensus       147 ~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~  197 (840)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            4444444432 12334444444444444444443333   334444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.3e-14  Score=140.06  Aligned_cols=129  Identities=26%  Similarity=0.264  Sum_probs=71.3

Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeec
Q 003199           95 TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN  174 (840)
Q Consensus        95 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  174 (840)
                      +.+++++|.++ .+|..+  .++|+.|++++|+ +.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            34444444444 233222  2345555555554 2222233345555566666666666544444556666666666666


Q ss_pred             cccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccc
Q 003199          175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG  227 (840)
Q Consensus       175 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  227 (840)
                      |+|++.++..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            66665555556666666666666666665544455666666666666666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=3.1e-15  Score=144.18  Aligned_cols=134  Identities=17%  Similarity=0.194  Sum_probs=109.3

Q ss_pred             ccccccCCceEEeeCceeeccCCccccCC-CcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCc
Q 003199          256 SLARCKNLLRFRVSNNHLEGSIPEGILSL-PHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAIS  334 (840)
Q Consensus       256 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  334 (840)
                      .+..+.+|+.|++++|+++ .+|. +..+ ++|+.|++++|.+++.  ..|+.+++|+.|+|++|+|++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4667788999999999998 4554 4444 4899999999999875  67888999999999999998765566688899


Q ss_pred             ccEEEcCCCccCCCCCC--cccCccccchhcccCCccCCCcch----hcccccCCCEEECcCccccc
Q 003199          335 LVKIDLSDNLLSGPIPS--GIGNLKKLNLLMLQSNKLNSSIPN----SLSSLKSLNVLDLSNNLLTG  395 (840)
Q Consensus       335 L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~  395 (840)
                      |+.|+|++|+++ .+|.  .++.+++|+.|+|++|+++ .+|.    .+..+++|+.||+++|.+..
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999999997 4555  7888899999999999997 4555    48889999999999998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=7.9e-15  Score=141.27  Aligned_cols=106  Identities=20%  Similarity=0.193  Sum_probs=71.0

Q ss_pred             cccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCc--ccCCCCCCCee
Q 003199           69 KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPE--ELGNLTELTDL  146 (840)
Q Consensus        69 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~--~l~~l~~L~~L  146 (840)
                      +|+.|+|++|.+++.  ..|+.+++|++|+|++|+|++..+..|..+++|+.|+|++|+  .+.+|.  .+..+++|++|
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS--LVELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC--CCCGGGGGGGGGCTTCCEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc--CCcchhhHhhhcCCCCCEE
Confidence            445555555555443  456667777777777777775544555777777777777776  244554  67777788888


Q ss_pred             eccCCcccccCCcc----ccCCCCCcEEEeecccccc
Q 003199          147 DMSVNHLSGKIPES----ILRLPKLRVLQLYNNSLSG  179 (840)
Q Consensus       147 ~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~  179 (840)
                      ++++|.++. .|..    +..+++|+.|++++|.+..
T Consensus       119 ~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          119 CILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             ECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            888888873 4543    7778888888888887763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.52  E-value=4.6e-13  Score=146.93  Aligned_cols=163  Identities=10%  Similarity=0.075  Sum_probs=97.9

Q ss_pred             cCCCCcccccccc-cccEEEecCccccccCCccccCCCCCcEEEccCCc---ccccCchhhhcCCCCCeeecccCccccc
Q 003199           56 LWKLPESSIFRLT-KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNF---ITGHIPPEIGLLKNLRQLELYYNQQLAG  131 (840)
Q Consensus        56 l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~p~~~~~l~~L~~L~L~~n~~~~~  131 (840)
                      ++.+...+|.+.. .|+.+.+..+ ++.+-..+|.++.+|+.+.+..|.   ++.....+|..+.+|+.+.+..+-  ..
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~--~~  127 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSV--TE  127 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTC--SE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCcc--ce
Confidence            4455556666653 4666666543 555666667777777777766553   444445666667777766665442  33


Q ss_pred             cCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCC
Q 003199          132 TIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQ  211 (840)
Q Consensus       132 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  211 (840)
                      ....+|.++.+|+.+.+..+- ..+....|..+.+|+.+.+..+ +..+...+|.+ ..|+.+.+..+-.. +...+|..
T Consensus       128 I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~  203 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSE  203 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTT
T ss_pred             ehhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhh
Confidence            334456677777777776443 3355566777777777777654 44455555654 56777777655443 55566666


Q ss_pred             CCCcceeccccccc
Q 003199          212 WSPLVVLDLSENKL  225 (840)
Q Consensus       212 l~~L~~L~L~~N~l  225 (840)
                      +.+|.......+..
T Consensus       204 c~~l~~~~~~~~~~  217 (394)
T 4gt6_A          204 CFALSTITSDSESY  217 (394)
T ss_dssp             CTTCCEEEECCSSS
T ss_pred             ccccceeccccccc
Confidence            66666666555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.51  E-value=7.9e-13  Score=145.02  Aligned_cols=336  Identities=10%  Similarity=0.088  Sum_probs=186.2

Q ss_pred             cccCCccccCCC-CCCEEeCCCCCCCccCCCCcccccccccccEEEecCcc---ccccCCccccCCCCCcEEEccCCccc
Q 003199           30 TGQFPLSVFNLT-NLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA---LHGQIPASIGNVTSLTDLELTGNFIT  105 (840)
Q Consensus        30 ~~~~p~~~~~l~-~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~  105 (840)
                      +.+...+|.+.. .|+.+.+..+    ++.+...+|.++++|+.+.+..|.   ++.+-..+|.++.+|+.+.+..+ ++
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~  126 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT  126 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred             eEcCHhhccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc
Confidence            334444555543 3666666543    455555666666666666665542   44444556666666666655544 33


Q ss_pred             ccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhh
Q 003199          106 GHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVI  185 (840)
Q Consensus       106 ~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  185 (840)
                      ......|....+|+.+.+..+-  ......+|.++.+|+.+.+..+ +..+...+|.. ..|+.+.+..+-.. +...+|
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af  201 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAF  201 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTT
T ss_pred             eehhhhhhhhccccccccccee--eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchh
Confidence            3445566666666666665442  2233345666666776666554 33344445543 45677766654332 555666


Q ss_pred             hcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCce
Q 003199          186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLR  265 (840)
Q Consensus       186 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  265 (840)
                      .++..|+......+.........+...........           .+.....+..+.+. +.+......+|..+.+|+.
T Consensus       202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~  269 (394)
T 4gt6_A          202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIP-NGVARIETHAFDSCAYLAS  269 (394)
T ss_dssp             TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCE
T ss_pred             hhccccceecccccccccccceeeccccccccccc-----------ccccccccceEEcC-CcceEcccceeeecccccE
Confidence            77777777666655544211111111000000000           00001111111111 1223344566777778888


Q ss_pred             EEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCcc
Q 003199          266 FRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLL  345 (840)
Q Consensus       266 L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  345 (840)
                      +.+.++... ....+|..++.|+.+.+. +.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.|..+ +
T Consensus       270 i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v  345 (394)
T 4gt6_A          270 VKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V  345 (394)
T ss_dssp             EECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C
T ss_pred             Eecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c
Confidence            877766554 556677777888888875 4566666778888888888888765 66566777888888888888654 5


Q ss_pred             CCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCcccc
Q 003199          346 SGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLT  394 (840)
Q Consensus       346 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  394 (840)
                      +..-..+|.++.+|+.+++.+|...   ..++....+|+.+.+..|.+.
T Consensus       346 ~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          346 TKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred             CEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence            5455567888888888888887653   256777788888887766543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=2.5e-16  Score=155.02  Aligned_cols=132  Identities=25%  Similarity=0.337  Sum_probs=74.0

Q ss_pred             ccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcc
Q 003199          256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISL  335 (840)
Q Consensus       256 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  335 (840)
                      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++. +|..+..+++|+.|+|++|++++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            55666666666666666653 44 55555666666666666652 34444445566666666666654 23 45555666


Q ss_pred             cEEEcCCCccCCCCC-CcccCccccchhcccCCccCCCcch----------hcccccCCCEEECcCcccc
Q 003199          336 VKIDLSDNLLSGPIP-SGIGNLKKLNLLMLQSNKLNSSIPN----------SLSSLKSLNVLDLSNNLLT  394 (840)
Q Consensus       336 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~l~~N~l~  394 (840)
                      +.|+|++|++++..+ ..+..+++|+.|++++|++++.+|.          .+..+++|+.||  +|+++
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            666666666653221 2455556666666666666544333          255666666665  55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=1.6e-16  Score=156.45  Aligned_cols=152  Identities=25%  Similarity=0.287  Sum_probs=87.6

Q ss_pred             cccccEEEecCccccccCCc------cccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCC
Q 003199           67 LTKLRIMVLATCALHGQIPA------SIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNL  140 (840)
Q Consensus        67 l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l  140 (840)
                      ...++.++++.+.+.+..|.      .+..+++|++|+|++|.+++ +| .+..+++|+.|+|++|+  ...+|..+..+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~--l~~l~~~~~~~   92 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL--IKKIENLDAVA   92 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE--ECSCSSHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC--cccccchhhcC
Confidence            34444444444444444443      56666666666666666663 44 66666666666666665  22455555555


Q ss_pred             CCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccc-hhhhcCCCCCEEEccCCcCcccCCcC----------C
Q 003199          141 TELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEIS-SVIANSTTLTMLSLYDNSLTGEVPQD----------L  209 (840)
Q Consensus       141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~----------l  209 (840)
                      ++|++|+|++|++++ +| .+..+++|++|++++|++++... ..+..+++|++|++++|++.+..|..          +
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            666666666666664 23 45566666666666666664332 45666666666666666665443332          4


Q ss_pred             CCCCCcceecccccccc
Q 003199          210 GQWSPLVVLDLSENKLS  226 (840)
Q Consensus       210 ~~l~~L~~L~L~~N~l~  226 (840)
                      ..+++|+.||  +|.++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            5556666655  45444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1e-13  Score=132.43  Aligned_cols=109  Identities=26%  Similarity=0.279  Sum_probs=83.8

Q ss_pred             ccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccC
Q 003199          287 VSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQS  366 (840)
Q Consensus       287 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  366 (840)
                      .+.+++++|+++.++ ..+  .++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456667777766433 323  26677777777777777777778888888888888888877677778888888899999


Q ss_pred             CccCCCcchhcccccCCCEEECcCccccccCC
Q 003199          367 NKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       367 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  398 (840)
                      |+|++..+..|..+++|++|+|++|++++..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            98887777778889999999999999886554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=3.2e-13  Score=129.39  Aligned_cols=106  Identities=21%  Similarity=0.273  Sum_probs=74.2

Q ss_pred             cEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCC
Q 003199          288 SIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSN  367 (840)
Q Consensus       288 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  367 (840)
                      +.+++++|+++.+ |..+  .++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4555566655533 2222  256666777777776666666777777777777777777655556777888888888888


Q ss_pred             ccCCCcchhcccccCCCEEECcCcccccc
Q 003199          368 KLNSSIPNSLSSLKSLNVLDLSNNLLTGY  396 (840)
Q Consensus       368 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  396 (840)
                      +|++..+..|..+++|++|+|++|+|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            88866666688888888888888888854

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=4.6e-13  Score=127.85  Aligned_cols=108  Identities=21%  Similarity=0.262  Sum_probs=94.6

Q ss_pred             CceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCC
Q 003199          263 LLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSD  342 (840)
Q Consensus       263 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  342 (840)
                      .+.+++++|+++ .+|..+.  ++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            468899999998 5776663  7899999999999998899999999999999999999977777788999999999999


Q ss_pred             CccCCCCCCcccCccccchhcccCCccCCCc
Q 003199          343 NLLSGPIPSGIGNLKKLNLLMLQSNKLNSSI  373 (840)
Q Consensus       343 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  373 (840)
                      |+|++..+..|..+++|+.|+|++|+++...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999777778999999999999999998543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=1.3e-12  Score=125.01  Aligned_cols=104  Identities=21%  Similarity=0.222  Sum_probs=67.1

Q ss_pred             CeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccC
Q 003199          119 RQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYD  198 (840)
Q Consensus       119 ~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  198 (840)
                      +.+++++|+  ...+|..+.  ++|++|+|++|+|++..|..|.++++|++|+|++|+|+++++..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~--l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIR--LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSC--CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCC--CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            344555444  234444332  5666666666666666666666777777777777777766666666777777777777


Q ss_pred             CcCcccCCcCCCCCCCcceecccccccc
Q 003199          199 NSLTGEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       199 N~l~~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      |+|+++.+..|..+++|+.|+|++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            7777555555777777777777777766

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=7.9e-14  Score=150.77  Aligned_cols=183  Identities=19%  Similarity=0.167  Sum_probs=100.7

Q ss_pred             CCCCEEeCCCCCCCccCCCCccccccc-----ccccEEEecCccccccCCccc-cCCCCCcEEEccCCcccccCchhhh-
Q 003199           41 TNLEVLSFNENPGFKLWKLPESSIFRL-----TKLRIMVLATCALHGQIPASI-GNVTSLTDLELTGNFITGHIPPEIG-  113 (840)
Q Consensus        41 ~~L~~L~L~~N~~~~l~~l~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~p~~~~-  113 (840)
                      ++|+.|+|++|   .+.......+...     ++|+.|+|++|.+.......+ ..+++|++|+|++|.|++.....+. 
T Consensus        72 ~~L~~L~Ls~n---~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGV---RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTS---CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             hhCCEEEecCC---CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            45666666666   3333222233322     466666666666643322222 2345667777777777644333332 


Q ss_pred             ----cCCCCCeeecccCcccc---ccCCcccCCCCCCCeeeccCCcccccC----CccccCCCCCcEEEeecccccccc-
Q 003199          114 ----LLKNLRQLELYYNQQLA---GTIPEELGNLTELTDLDMSVNHLSGKI----PESILRLPKLRVLQLYNNSLSGEI-  181 (840)
Q Consensus       114 ----~l~~L~~L~L~~n~~~~---~~~p~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~-  181 (840)
                          ..++|++|+|++|.+..   ..++..+..+++|++|+|++|.|+...    +..+...++|++|+|++|.|++.. 
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence                34667777777776211   123334456677777777777776422    345566677888888888887533 


Q ss_pred             ---chhhhcCCCCCEEEccCCcCcccCCcCCCCC---C--Ccceec--ccccccc
Q 003199          182 ---SSVIANSTTLTMLSLYDNSLTGEVPQDLGQW---S--PLVVLD--LSENKLS  226 (840)
Q Consensus       182 ---~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l---~--~L~~L~--L~~N~l~  226 (840)
                         ...+...++|++|+|++|.|+......+..+   .  .|+.+.  +..|.++
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence               3345556788888888888874333322221   2  266666  6666665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=3.1e-14  Score=153.99  Aligned_cols=111  Identities=23%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             CCCcEEEccCCcccccCchhhhcC-----CCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccc-----
Q 003199           92 TSLTDLELTGNFITGHIPPEIGLL-----KNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI-----  161 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~l-----~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~-----  161 (840)
                      ++|++|+|++|.|+......+...     ++|+.|+|++|.+....+......+++|++|+|++|.|+......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            456777777777764433333332     4556666655542111111111223345555555555543222222     


Q ss_pred             cCCCCCcEEEeecccccccc----chhhhcCCCCCEEEccCCcCc
Q 003199          162 LRLPKLRVLQLYNNSLSGEI----SSVIANSTTLTMLSLYDNSLT  202 (840)
Q Consensus       162 ~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~  202 (840)
                      ...++|++|+|++|.|+...    +..+..+++|++|+|++|+|+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            12344555555555544321    222234444555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.29  E-value=2e-10  Score=125.26  Aligned_cols=317  Identities=9%  Similarity=0.022  Sum_probs=163.5

Q ss_pred             CCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccC
Q 003199           11 PDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGN   90 (840)
Q Consensus        11 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   90 (840)
                      |.|....+|+.+.+... ++.+...+|.++.+|+.+.|..+    +..+...+|.+. +|+.+.+..+ ++.+...+|..
T Consensus        40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~  112 (379)
T 4h09_A           40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG  112 (379)
T ss_dssp             TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT
T ss_pred             cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECCce-eeEeccceecc
Confidence            34455566777777643 55456666777777777777543    556666666665 4555555433 44444455554


Q ss_pred             CCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEE
Q 003199           91 VTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVL  170 (840)
Q Consensus        91 l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  170 (840)
                       .+|+.+.+..+-.. .....|... +|+.+.+-.+-  .......|.....++.+.+..+.........+.        
T Consensus       113 -~~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~v--~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~--------  179 (379)
T 4h09_A          113 -TDLDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKSV--TTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL--------  179 (379)
T ss_dssp             -CCCSEEECCTTCCE-ECTTTTTTC-CCCEEEECTTC--CEECSCTTTTCTTCCEEEECTTCSSEEEETTEE--------
T ss_pred             -CCcccccCCCcccc-ccccccccc-eeeeeecccee--eccccchhcccccccccccccccceeeccccee--------
Confidence             35666666654332 333444433 44444444331  222233455555565555544332211000000        


Q ss_pred             EeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhccccccc
Q 003199          171 QLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFS  250 (840)
Q Consensus       171 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~  250 (840)
                         .+.. ......+.....+..+.+..+.-. .....+....+|+.+.+..+ +.......|.....|+.+.+..+ +.
T Consensus       180 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~  252 (379)
T 4h09_A          180 ---YNKN-KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT  252 (379)
T ss_dssp             ---EETT-SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC
T ss_pred             ---cccc-cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc
Confidence               0000 011112233334444444333222 33334444445555544433 23334444444555555544433 33


Q ss_pred             ccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhc
Q 003199          251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIY  330 (840)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  330 (840)
                      .+...+|..+.+|+.+.+..+ ++......|..+.+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.
T Consensus       253 ~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  330 (379)
T 4h09_A          253 SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK  330 (379)
T ss_dssp             EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence            344556666677777776543 44344556666777777777777776666677777777777777654 5555666777


Q ss_pred             ccCcccEEEcCCCccCCCCCCcccCcc
Q 003199          331 RAISLVKIDLSDNLLSGPIPSGIGNLK  357 (840)
Q Consensus       331 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~  357 (840)
                      ++.+|+.+.+..+ ++..-..+|.++.
T Consensus       331 ~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          331 NCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             CCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            7777777777554 4434445565553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.27  E-value=3.7e-10  Score=123.11  Aligned_cols=314  Identities=8%  Similarity=0.028  Sum_probs=153.5

Q ss_pred             ccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCC
Q 003199           37 VFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLK  116 (840)
Q Consensus        37 ~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~  116 (840)
                      +....+|+.+.+..+    ++.++..+|.++.+|+.+.|..+ ++.+-..+|.+. +|+.+.+..+ ++.....+|.. .
T Consensus        42 ~~~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~  113 (379)
T 4h09_A           42 YKDRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-T  113 (379)
T ss_dssp             GGGGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-C
T ss_pred             cccccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-C
Confidence            444566777777654    66667777777777777777543 555555666665 5666665543 33233444444 2


Q ss_pred             CCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEc
Q 003199          117 NLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSL  196 (840)
Q Consensus       117 ~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  196 (840)
                      +|+.+.+..+-  ......+|.+ .+|+.+.+..+ ++.+....|..+..++.+.+..+.........+..         
T Consensus       114 ~L~~i~lp~~~--~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~---------  180 (379)
T 4h09_A          114 DLDDFEFPGAT--TEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY---------  180 (379)
T ss_dssp             CCSEEECCTTC--CEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE---------
T ss_pred             CcccccCCCcc--cccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceec---------
Confidence            56666665442  2112222332 24444444332 22234445555555555555444332111111000         


Q ss_pred             cCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeecc
Q 003199          197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGS  276 (840)
Q Consensus       197 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~  276 (840)
                        +... .....+.....+..+.+..+.. ......+....+|+.+.+..+ +......+|..+.+|+.+.+..+ ++..
T Consensus       181 --~~~~-~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I  254 (379)
T 4h09_A          181 --NKNK-TILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSI  254 (379)
T ss_dssp             --ETTS-SEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEE
T ss_pred             --cccc-ceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEe
Confidence              0000 1122333444555555443322 233444445555555544333 33344455566666666666554 3334


Q ss_pred             CCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCc
Q 003199          277 IPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNL  356 (840)
Q Consensus       277 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  356 (840)
                      ...+|....+|+.+.+..+ ++.....+|.++++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++..-..+|.++
T Consensus       255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  332 (379)
T 4h09_A          255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC  332 (379)
T ss_dssp             CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence            4445555556666655432 44444455555666666666555555455555555556666655433 433334455555


Q ss_pred             cccchhcccCCccCCCcchhcccc
Q 003199          357 KKLNLLMLQSNKLNSSIPNSLSSL  380 (840)
Q Consensus       357 ~~L~~L~Ls~N~l~~~~~~~~~~l  380 (840)
                      .+|+.+.+..+ ++.+-..+|.++
T Consensus       333 ~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          333 KALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             CCCCEEEECCc-cCEEchhHhhCC
Confidence            55555555433 433334444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=1.2e-11  Score=133.08  Aligned_cols=102  Identities=17%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             EEeeCc-eeeccCCccccCCCcccEEeccC-CcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCC
Q 003199          266 FRVSNN-HLEGSIPEGILSLPHVSIIDLSY-NSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDN  343 (840)
Q Consensus       266 L~l~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  343 (840)
                      ++++++ +|+ .+|. +..+++|+.|+|++ |+|++..+..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            444554 454 3444 55555555555553 5555544445555555555555555555444444444555555555555


Q ss_pred             ccCCCCCCcccCccccchhcccCCccC
Q 003199          344 LLSGPIPSGIGNLKKLNLLMLQSNKLN  370 (840)
Q Consensus       344 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~  370 (840)
                      +|++..+..|..++ |+.|+|++|++.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            55433333333333 444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=3e-11  Score=130.08  Aligned_cols=102  Identities=20%  Similarity=0.173  Sum_probs=82.8

Q ss_pred             CEEecCCC-cCcccCCccccCCCCCCEEeCCC-CCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEE
Q 003199           20 RRLDLSNN-LFTGQFPLSVFNLTNLEVLSFNE-NPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDL   97 (840)
Q Consensus        20 ~~L~Ls~n-~i~~~~p~~~~~l~~L~~L~L~~-N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   97 (840)
                      ..++++++ +++ .+|. +..+++|++|+|++ |   .+..+++..|.+|++|+.|+|++|.|++..|..|.+|++|++|
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQ---HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCS---SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCC---CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            45789988 888 6787 99999999999986 8   6777888888888888888888888888888888888888888


Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCc
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQ  127 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~  127 (840)
                      +|++|+|++..+..|..++ |+.|+|.+|.
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCC
Confidence            8888888865555665555 7788887776

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.12  E-value=1.8e-10  Score=118.52  Aligned_cols=146  Identities=14%  Similarity=0.062  Sum_probs=112.0

Q ss_pred             HHHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeE
Q 003199          522 REILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCY  600 (840)
Q Consensus       522 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~  600 (840)
                      ......|+....++.|+.+.||++... ++.+++|+.......          ....+.+|+++++.+. +..+.+++++
T Consensus        10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~----------~~~~~~~E~~~l~~l~~~~~vP~v~~~   78 (263)
T 3tm0_A           10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKG----------TTYDVEREKDMMLWLEGKLPVPKVLHF   78 (263)
T ss_dssp             HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTT----------STTCHHHHHHHHHHHTTTSCCCCEEEE
T ss_pred             HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCC----------CHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            445567877778888999999999755 689999987432100          0124778999998884 6778899999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcC---------------------------
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL---------------------------  653 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~---------------------------  653 (840)
                      +......++||||++|.++.+...      +......++.++++++..||+..                           
T Consensus        79 ~~~~~~~~lv~e~i~G~~l~~~~~------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (263)
T 3tm0_A           79 ERHDGWSNLLMSEADGVLCSEEYE------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLAD  152 (263)
T ss_dssp             EEETTEEEEEEECCSSEEHHHHCC------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSC
T ss_pred             EecCCceEEEEEecCCeehhhccC------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccc
Confidence            988888999999999999887632      12234578899999999999811                           


Q ss_pred             -----------------------------CCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          654 -----------------------------LSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       654 -----------------------------~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                                                   ...++|+|++|.||+++++..+.|+||+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          153 VDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             CSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             cccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                                         1348999999999999876556799999764

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.03  E-value=3.9e-10  Score=116.01  Aligned_cols=128  Identities=16%  Similarity=0.111  Sum_probs=95.4

Q ss_pred             eccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCC--cceeeeEEecCccceEEEe
Q 003199          535 GQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN--IVKLYCYFSSLYCNLLVYE  612 (840)
Q Consensus       535 g~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lV~e  612 (840)
                      +.|..+.||++...+|+.+++|+.....             ...+.+|+.+++.+.+.+  +.+++++....+..++|||
T Consensus        29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~~-------------~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e   95 (264)
T 1nd4_A           29 IGCSDAAVFRLSAQGRPVLFVKTDLSGA-------------LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLG   95 (264)
T ss_dssp             CTTSSCEEEEEECTTSCCEEEEEECSCT-------------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEE
T ss_pred             cCCCCceEEEEecCCCCeEEEEeCCccc-------------chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEE
Confidence            4566699999987778889999864321             123667888888886544  5568888887778899999


Q ss_pred             ecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcC---------------------------------------
Q 003199          613 YMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL---------------------------------------  653 (840)
Q Consensus       613 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~---------------------------------------  653 (840)
                      |++|.++.  ...    .   ....++.++++.+..||+..                                       
T Consensus        96 ~i~G~~l~--~~~----~---~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (264)
T 1nd4_A           96 EVPGQDLL--SSH----L---APAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLA  166 (264)
T ss_dssp             CCSSEETT--TSC----C---CHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCC
T ss_pred             ecCCcccC--cCc----C---CHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCcc
Confidence            99998883  211    1   13367788888888888731                                       


Q ss_pred             ----------------CCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          654 ----------------LSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       654 ----------------~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                                      ...++|+|++|.||++++++.+.|+|||.+.
T Consensus       167 ~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          167 PAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             HHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                            0129999999999999877666799999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=4.4e-10  Score=120.23  Aligned_cols=183  Identities=15%  Similarity=0.147  Sum_probs=93.4

Q ss_pred             CCCCEEecCCCcCcc-c-------CCccccCCCCCCEEeCCCCCCCc--cCCC----CcccccccccccEEEecCccccc
Q 003199           17 QNLRRLDLSNNLFTG-Q-------FPLSVFNLTNLEVLSFNENPGFK--LWKL----PESSIFRLTKLRIMVLATCALHG   82 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~-~-------~p~~~~~l~~L~~L~L~~N~~~~--l~~l----~~~~~~~l~~L~~L~L~~n~l~~   82 (840)
                      ..++.|.+..+...+ .       +..++..+++|+.|.+..+....  +.-+    -...+..+++|+.|.|++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            456777777665442 1       13345567888888887652110  1000    1133456678888888776311 


Q ss_pred             cCCccccCCCCCcEEEccCCcccccCchhhh--cCCCCCeeecccCcccc-cc-----CCccc--CCCCCCCeeeccCCc
Q 003199           83 QIPASIGNVTSLTDLELTGNFITGHIPPEIG--LLKNLRQLELYYNQQLA-GT-----IPEEL--GNLTELTDLDMSVNH  152 (840)
Q Consensus        83 ~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~--~l~~L~~L~L~~n~~~~-~~-----~p~~l--~~l~~L~~L~L~~n~  152 (840)
                      .++. +. +++|++|+|..|.+.......+.  .+++|+.|+|+.+.... +.     +...+  ..+++|++|+|++|.
T Consensus       186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            2232 33 67788888887777644334444  57788888775321000 00     00111  134556666665555


Q ss_pred             ccccCCcccc---CCCCCcEEEeeccccccccc----hhhhcCCCCCEEEccCCcCc
Q 003199          153 LSGKIPESIL---RLPKLRVLQLYNNSLSGEIS----SVIANSTTLTMLSLYDNSLT  202 (840)
Q Consensus       153 l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~  202 (840)
                      +....+..+.   .+++|++|+|+.|.|.+...    ..+..+++|+.|+|++|.|+
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            5432211121   34555555555555554221    12233455555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.90  E-value=4.2e-10  Score=120.40  Aligned_cols=179  Identities=15%  Similarity=0.169  Sum_probs=124.3

Q ss_pred             CCCCCCCCEEecCCCcCc---------ccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccccc
Q 003199           13 FSPMQNLRRLDLSNNLFT---------GQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQ   83 (840)
Q Consensus        13 ~~~l~~L~~L~Ls~n~i~---------~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~   83 (840)
                      ...+++|+.|.+.++...         +.++..+..+++|+.|+|++|...   .++.  + .+++|+.|+|..|.+...
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l---~l~~--~-~~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL---SIGK--K-PRPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC---BCCS--C-BCTTCSEEEEECSBCCHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc---eecc--c-cCCCCcEEEEecCCCChH
Confidence            445789999999765432         134556778899999999988322   3333  3 388999999999998754


Q ss_pred             CCcccc--CCCCCcEEEccC--Ccccc-----cCchhh--hcCCCCCeeecccCccccccCCccc---CCCCCCCeeecc
Q 003199           84 IPASIG--NVTSLTDLELTG--NFITG-----HIPPEI--GLLKNLRQLELYYNQQLAGTIPEEL---GNLTELTDLDMS  149 (840)
Q Consensus        84 ~~~~~~--~l~~L~~L~L~~--n~i~~-----~~p~~~--~~l~~L~~L~L~~n~~~~~~~p~~l---~~l~~L~~L~L~  149 (840)
                      ....+.  .+++|++|+|+.  |...+     .+...+  ..+++|+.|+|++|.+ .+..+..+   ..+++|++|+|+
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i-~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE-QNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT-HHHHHHHHHHCSSGGGCSEEECC
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC-chHHHHHHHhCccCCCCCEEECC
Confidence            434443  789999999863  22211     111223  2579999999998873 32222222   357899999999


Q ss_pred             CCcccccC----CccccCCCCCcEEEeeccccccccchhhhc-CCCCCEEEccCCc
Q 003199          150 VNHLSGKI----PESILRLPKLRVLQLYNNSLSGEISSVIAN-STTLTMLSLYDNS  200 (840)
Q Consensus       150 ~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~  200 (840)
                      .|.+++..    +..+..+++|+.|+|++|.|++.....+.. +  ...++++.++
T Consensus       288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            99998642    334456799999999999998665555554 3  5678888887

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.87  E-value=4.9e-09  Score=113.18  Aligned_cols=144  Identities=17%  Similarity=0.280  Sum_probs=105.1

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC--CCCcceeeeEEecC---c
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR--HKNIVKLYCYFSSL---Y  605 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~  605 (840)
                      .+.++.|.++.||++... +..+++|+...+....       ......+.+|+.+++.+.  +..+.+++.++.+.   +
T Consensus        43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~-------~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g  114 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKL-------LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIG  114 (359)
T ss_dssp             EEECCC-CCSCEEEEECS-SCEEEEECCCC-----------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTS
T ss_pred             EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCC-------CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccC
Confidence            457899999999999876 4678888764101000       011345778999999886  45688899888776   4


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcC--------------------------------
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL--------------------------------  653 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~--------------------------------  653 (840)
                      ..++||||++|..+.+...   ..++..++..++.+++++|..||+..                                
T Consensus       115 ~~~~vme~v~G~~l~~~~~---~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (359)
T 3dxp_A          115 RAFYIMEFVSGRVLWDQSL---PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSET  191 (359)
T ss_dssp             SCEEEEECCCCBCCCCTTC---TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCC
T ss_pred             CeEEEEEecCCeecCCCcc---ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCC
Confidence            4799999999877754221   24677888899999999999999721                                


Q ss_pred             -----------------------CCCeEecCCCCCCEEEcCCCC--Ceeecccchhh
Q 003199          654 -----------------------LSPIIHRDIKSTNILLDVNYQ--PKVADFGIAKV  685 (840)
Q Consensus       654 -----------------------~~~ivH~Dlk~~Nill~~~~~--~kl~Dfg~a~~  685 (840)
                                             ...++|+|+++.||+++.++.  +.|+||+.+..
T Consensus       192 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          192 ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                                   246899999999999997753  58999998754

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.74  E-value=8.4e-09  Score=108.46  Aligned_cols=187  Identities=21%  Similarity=0.168  Sum_probs=120.2

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCC--cceeeeEEecCc--
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKN--IVKLYCYFSSLY--  605 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~--  605 (840)
                      .+.++.|....||++.    +.+++|+....            .....+.+|+++++.+. +..  +.+++.......  
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~------------~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~   88 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHS------------RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETY   88 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSH------------HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSC
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCc------------chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCC
Confidence            4568999999999863    56888875211            22456888999998873 332  445555543333  


Q ss_pred             -cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcC-------------------------------
Q 003199          606 -CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL-------------------------------  653 (840)
Q Consensus       606 -~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-------------------------------  653 (840)
                       ..|+||||++|.++.+....   .++..++..++.+++..++.||+..                               
T Consensus        89 ~~~~~vm~~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
T 3sg8_A           89 QMSFAGFTKIKGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSREL  165 (304)
T ss_dssp             SCSCEEEECCCCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTS
T ss_pred             CcceEEEcccCCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccC
Confidence             34899999999888654332   4567778888888888888888611                               


Q ss_pred             ------------------------CCCeEecCCCCCCEEEcC--CCCCeeecccchhhhhccCCCCccee----------
Q 003199          654 ------------------------LSPIIHRDIKSTNILLDV--NYQPKVADFGIAKVLQARGGKDSTTT----------  697 (840)
Q Consensus       654 ------------------------~~~ivH~Dlk~~Nill~~--~~~~kl~Dfg~a~~~~~~~~~~~~~~----------  697 (840)
                                              ...++|+|++|.||++++  ...+.|+||+.+..-..  ..+-...          
T Consensus       166 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~--~~Dl~~~~~~~~~~~~~  243 (304)
T 3sg8_A          166 KGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDP--DNDFISLMEDDEEYGME  243 (304)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECT--THHHHTTCCTTTSCCHH
T ss_pred             CcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCCh--HHHHHHHHhhccccCHH
Confidence                                    134799999999999998  45678999998754211  0000000          


Q ss_pred             ---cccccccccC-ccccccCCCCccccchhHHHHHHHHHhCCCCCC
Q 003199          698 ---VIAGTYGYLA-PEYAYSSKATTKCDVYSFGVVLMELITGRKPVE  740 (840)
Q Consensus       698 ---~~~gt~~y~a-PE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~  740 (840)
                         ......++.. |+...  +.....+.|++|.++|++.+|..+|.
T Consensus       244 ~~~~~l~~Y~~~~~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          244 FVSKILNHYKHKDIPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHHHHHHTCSCHHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence               0000001111 22111  11223689999999999999987763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=2.7e-08  Score=100.58  Aligned_cols=65  Identities=29%  Similarity=0.351  Sum_probs=28.5

Q ss_pred             cCcccEEEcCCCccCC--CCCCcccCccccchhcccCCccCCCcchhccccc--CCCEEECcCccccccCC
Q 003199          332 AISLVKIDLSDNLLSG--PIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLK--SLNVLDLSNNLLTGYIP  398 (840)
Q Consensus       332 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p  398 (840)
                      +++|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|++++.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3444444444444443  2233334444444455555544432  1122222  45555555555554444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=2.7e-08  Score=95.87  Aligned_cols=112  Identities=15%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             CCCcccEEeccCC-ccccc----CCcccCCCCCCceeecccceeeec----cchhhcccCcccEEEcCCCccCCC----C
Q 003199          283 SLPHVSIIDLSYN-SFSGP----IANTVGNARNLSELFMQRNQISGF----IPSEIYRAISLVKIDLSDNLLSGP----I  349 (840)
Q Consensus       283 ~l~~L~~L~L~~N-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~  349 (840)
                      ..+.|++|+|++| .+...    +...+...++|++|+|++|.|...    +...+...++|++|+|++|.|.+.    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3444555555555 44321    222334445566666666666532    233344445677777777776642    3


Q ss_pred             CCcccCccccchhcc--cCCccCCC----cchhcccccCCCEEECcCcccc
Q 003199          350 PSGIGNLKKLNLLML--QSNKLNSS----IPNSLSSLKSLNVLDLSNNLLT  394 (840)
Q Consensus       350 p~~~~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~  394 (840)
                      ...+...+.|+.|+|  ++|.|+..    +...+...++|++|+|++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            344555667777777  67777643    2344555678888888888875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.32  E-value=1.7e-07  Score=90.28  Aligned_cols=118  Identities=14%  Similarity=0.118  Sum_probs=56.4

Q ss_pred             CCCCCCCEEecCCC-cCccc----CCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccc
Q 003199           14 SPMQNLRRLDLSNN-LFTGQ----FPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASI   88 (840)
Q Consensus        14 ~~l~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   88 (840)
                      ...+.|++|+|++| .|...    +...+...++|++|+|++|.   +.+-...                    .+...+
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~---i~~~g~~--------------------~l~~~L   89 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR---SNDPVAF--------------------ALAEML   89 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC---CCHHHHH--------------------HHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC---CChHHHH--------------------HHHHHH
Confidence            44566666666666 66532    23344445566666666662   2111100                    112233


Q ss_pred             cCCCCCcEEEccCCccccc----CchhhhcCCCCCeeec--ccCccccc---cCCcccCCCCCCCeeeccCCccc
Q 003199           89 GNVTSLTDLELTGNFITGH----IPPEIGLLKNLRQLEL--YYNQQLAG---TIPEELGNLTELTDLDMSVNHLS  154 (840)
Q Consensus        89 ~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L--~~n~~~~~---~~p~~l~~l~~L~~L~L~~n~l~  154 (840)
                      ...++|++|+|++|.|++.    +...+...++|++|+|  ++|.+-..   .+...+...++|++|+|++|.+.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3344555555555555532    2334444555666666  44541110   01223444556666666666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=1.3e-07  Score=95.56  Aligned_cols=107  Identities=19%  Similarity=0.265  Sum_probs=57.9

Q ss_pred             CCCCCCCCE--EecCCCcCc---ccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCcc
Q 003199           13 FSPMQNLRR--LDLSNNLFT---GQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPAS   87 (840)
Q Consensus        13 ~~~l~~L~~--L~Ls~n~i~---~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~   87 (840)
                      |...+.|+.  ++++.|...   ..++....++++|+.|+|++|.+..+..++ ..+..+++|+.|+|++|.|.+.  ..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~--~~  213 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSE--RE  213 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSG--GG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCc--hh
Confidence            333344444  556666433   222222345677777777777443333322 3355667777777777777643  22


Q ss_pred             ccCCC--CCcEEEccCCcccccCc-------hhhhcCCCCCeee
Q 003199           88 IGNVT--SLTDLELTGNFITGHIP-------PEIGLLKNLRQLE  122 (840)
Q Consensus        88 ~~~l~--~L~~L~L~~n~i~~~~p-------~~~~~l~~L~~L~  122 (840)
                      +..+.  +|++|+|++|.+.+..|       ..+..+++|+.||
T Consensus       214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            33333  67777777777765443       2355666666664

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.26  E-value=3.9e-06  Score=86.31  Aligned_cols=134  Identities=17%  Similarity=0.166  Sum_probs=96.6

Q ss_pred             eeeccCCc-EEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEecCccceE
Q 003199          533 KVGQGGSG-TVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       533 ~lg~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~l  609 (840)
                      .+..|..| .||+.... ++..+++|+-..             .....+.+|...++.+. +-.+.++++++.+.+..++
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~-------------~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~l   97 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG-------------SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWL   97 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEET-------------HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCC-------------CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEE
Confidence            45667666 69997654 567889997521             12356778999888874 4447788999988889999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcC------------------------------------
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL------------------------------------  653 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~------------------------------------  653 (840)
                      |||++++.++.+.....     ......++.+++..+..||+..                                    
T Consensus        98 vme~l~G~~~~~~~~~~-----~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (272)
T 4gkh_A           98 LTTAIPGKTAFQVLEEY-----PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERN  172 (272)
T ss_dssp             EEECCCSEEHHHHHHHC-----GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGT
T ss_pred             EEEeeCCccccccccCC-----HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhcccccc
Confidence            99999998887655432     2234456667777777777421                                    


Q ss_pred             -------------------CCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          654 -------------------LSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       654 -------------------~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                                         ...++|+|+.+.|||+++++.+-|+||+.+.
T Consensus       173 ~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          173 GWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             TCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             chHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                               0137899999999999987767799999874

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.25  E-value=5.5e-06  Score=86.73  Aligned_cols=135  Identities=18%  Similarity=0.109  Sum_probs=92.5

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCC---CcceeeeEEe-cCcc
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK---NIVKLYCYFS-SLYC  606 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~  606 (840)
                      .+.++.|....||+.    |+.++||+...            ......+.+|+++++.+.+.   .+.+++.++. ..+.
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~~------------~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~   87 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPKS------------QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGN   87 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEESS------------HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSC
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecCC------------chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCc
Confidence            346888999999998    56788887411            12345788999999999642   3566677664 4455


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhc----------------------------------
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG----------------------------------  652 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~----------------------------------  652 (840)
                      .++||||++|..+.+....   .++..+...++.++++.|..||+.                                  
T Consensus        88 ~~~v~e~i~G~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l  164 (306)
T 3tdw_A           88 PFVGYRKVQGQILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLL  164 (306)
T ss_dssp             EEEEEECCCSEECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGS
T ss_pred             eEEEEeccCCeECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhccccc
Confidence            7899999999887653221   234444555555555555555542                                  


Q ss_pred             -----------------------CCCCeEecCCCCCCEEEcC---CCCC-eeecccchh
Q 003199          653 -----------------------LLSPIIHRDIKSTNILLDV---NYQP-KVADFGIAK  684 (840)
Q Consensus       653 -----------------------~~~~ivH~Dlk~~Nill~~---~~~~-kl~Dfg~a~  684 (840)
                                             ....++|+|+++.||+++.   ++.+ .|+||+.+.
T Consensus       165 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~  223 (306)
T 3tdw_A          165 DESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAA  223 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCE
T ss_pred             chhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcC
Confidence                                   1235699999999999987   4554 799999774

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.96  E-value=1.3e-05  Score=86.12  Aligned_cols=82  Identities=7%  Similarity=-0.012  Sum_probs=53.0

Q ss_pred             Cee-eccCCcEEEEEEeC-------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-C--CCcceeeeE
Q 003199          532 NKV-GQGGSGTVYKIDLN-------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-H--KNIVKLYCY  600 (840)
Q Consensus       532 ~~l-g~G~~g~Vy~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~  600 (840)
                      +.| +.|....+|+....       +++.+++|+...........       ...+.+|+.+++.+. +  -.+.+++.+
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~-------~~~~~~E~~~l~~L~~~~~vpvP~v~~~   98 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFP-------TYRLDHQFEVIRLVGELTDVPVPRVRWI   98 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSS-------CCCHHHHHHHHHHHHHHCCSCCCCEEEE
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCc-------hhHHHHHHHHHHHHhhcCCCCCCcEEEE
Confidence            457 88889999998654       26678888753221000000       123567888888774 3  356778888


Q ss_pred             EecC---ccceEEEeecCCCChH
Q 003199          601 FSSL---YCNLLVYEYMPNGNLW  620 (840)
Q Consensus       601 ~~~~---~~~~lV~e~~~~gsL~  620 (840)
                      +.+.   ...++||||++|..+.
T Consensus        99 ~~~~~~~g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A           99 ETTGDVLGTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             ECSSTTTSSCEEEEECCCCBCCC
T ss_pred             ccCCCccCCceEEEEecCCCChh
Confidence            7655   3568999999886654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=2.1e-06  Score=80.28  Aligned_cols=84  Identities=13%  Similarity=0.144  Sum_probs=41.8

Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCC----CCCCeeeccCCc-ccccCCccccCCCC
Q 003199           92 TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNL----TELTDLDMSVNH-LSGKIPESILRLPK  166 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~  166 (840)
                      .+|++|||++|.|++..-..+..+++|+.|+|++|..+++.--..+..+    ++|++|+|++|. |+...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3566777777666654444455566666666666543333222223332    245555555543 44332233444555


Q ss_pred             CcEEEeecc
Q 003199          167 LRVLQLYNN  175 (840)
Q Consensus       167 L~~L~L~~N  175 (840)
                      |++|+|+++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=2.3e-06  Score=80.03  Aligned_cols=91  Identities=11%  Similarity=0.087  Sum_probs=60.3

Q ss_pred             CcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccc-cccccchhhhcC----CCCCEEEccCCc-CcccCCc
Q 003199          134 PEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS-LSGEISSVIANS----TTLTMLSLYDNS-LTGEVPQ  207 (840)
Q Consensus       134 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~~  207 (840)
                      |.....-.+|++|||++|.|+...-..+.++++|++|+|++|. |++.....++.+    ++|++|+|++|. |+...-.
T Consensus        54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            4333233467778888777776555566777888888888874 666555555554    368888888764 6654444


Q ss_pred             CCCCCCCcceecccccc
Q 003199          208 DLGQWSPLVVLDLSENK  224 (840)
Q Consensus       208 ~l~~l~~L~~L~L~~N~  224 (840)
                      .+..+++|+.|+|+++.
T Consensus       134 ~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HGGGCTTCCEEEEESCT
T ss_pred             HHhcCCCCCEEECCCCC
Confidence            56667778888877764

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.81  E-value=3.2e-05  Score=82.46  Aligned_cols=31  Identities=29%  Similarity=0.281  Sum_probs=27.6

Q ss_pred             CCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          654 LSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       654 ~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|+|+++.||+++.++.+.|+||+.+.
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            3689999999999999888889999999763

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.65  E-value=0.00011  Score=79.98  Aligned_cols=82  Identities=12%  Similarity=0.085  Sum_probs=47.9

Q ss_pred             cCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC--C-CcceeeeEEecCcc
Q 003199          531 KNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH--K-NIVKLYCYFSSLYC  606 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~-niv~l~~~~~~~~~  606 (840)
                      .+.+|.|..+.||++... +++.|+||...........   ........+..|.++++.+..  + .+.+++.+  +.+.
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~---~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~  109 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGE---SWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEM  109 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC----------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTT
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCC---CCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCc
Confidence            457999999999999654 4688999986432110000   000112345668888877642  3 34455544  3445


Q ss_pred             ceEEEeecCCC
Q 003199          607 NLLVYEYMPNG  617 (840)
Q Consensus       607 ~~lV~e~~~~g  617 (840)
                      .++||||+++.
T Consensus       110 ~~lvmE~l~g~  120 (397)
T 2olc_A          110 AVTVMEDLSHL  120 (397)
T ss_dssp             TEEEECCCTTS
T ss_pred             cEEEEEeCCCc
Confidence            68999999764

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.61  E-value=0.00026  Score=73.62  Aligned_cols=136  Identities=17%  Similarity=0.119  Sum_probs=89.7

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC---CCCcceeeeEEecCccc
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR---HKNIVKLYCYFSSLYCN  607 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~  607 (840)
                      .+.|+.|....+|+.... +..++||+....             ....+..|++.++.+.   ...+.++++++...+..
T Consensus        41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~-------------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~  106 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS-------------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHS  106 (312)
T ss_dssp             EEEECCSSSSEEEEEESS-SCEEEEEEEEGG-------------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEE
T ss_pred             eEEeCCccceeeeEEEEC-CCeEEEEeCCcc-------------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCce
Confidence            457899999999998764 678889976321             1356788988888884   35688889888877888


Q ss_pred             eEEEeecCCCChHH-----------HhhcCCC---------------------CCChHHHH---HHH-------------
Q 003199          608 LLVYEYMPNGNLWD-----------ALHKGLV---------------------HLDWPTRH---KIA-------------  639 (840)
Q Consensus       608 ~lV~e~~~~gsL~~-----------~l~~~~~---------------------~~~~~~~~---~i~-------------  639 (840)
                      ++||||+++..+..           .++....                     .-+|.+..   ++.             
T Consensus       107 ~lvme~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~  186 (312)
T 3jr1_A          107 FLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIF  186 (312)
T ss_dssp             EEEEECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCC
T ss_pred             EEEEEeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            99999999876421           2222110                     12454322   011             


Q ss_pred             ---HHHH-HHHHHHhh-cCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          640 ---FGVA-QGLAYLHH-GLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       640 ---~~i~-~~l~~LH~-~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                         ..++ .....|.. .....+||+|+.+.|++++.++ +.|.||+
T Consensus       187 ~~~~~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          187 GNIDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             SCHHHHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHHHHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence               0111 11223321 1235789999999999999887 8888974

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=4.3e-05  Score=72.81  Aligned_cols=63  Identities=19%  Similarity=0.223  Sum_probs=29.8

Q ss_pred             ccCCCCCcEEEeeccccccc----cchhhhcCCCCCEEEccCCcCccc----CCcCCCCCCCcceeccccc
Q 003199          161 ILRLPKLRVLQLYNNSLSGE----ISSVIANSTTLTMLSLYDNSLTGE----VPQDLGQWSPLVVLDLSEN  223 (840)
Q Consensus       161 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L~~N  223 (840)
                      +..-..|+.|+|++|+|.+.    +..++...+.|++|+|++|+|...    +...+..-+.|++|+|++|
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            33344555555555555432    223333445555555555555522    1223444445666666543

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.22  E-value=0.00077  Score=69.59  Aligned_cols=78  Identities=17%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             cCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC---CCcceeeeEEecC
Q 003199          528 MTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH---KNIVKLYCYFSSL  604 (840)
Q Consensus       528 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~l~~~~~~~  604 (840)
                      ....+.+|.|..+.||+.+..||+.|+||+.......          ....|..|+..|+.+..   -.+.+++++.   
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~----------~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~---   83 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA----------LDGLFRAEALGLDWLGRSFGSPVPQVAGWD---   83 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC----------CTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcc----------hhhHHHHHHHHHHHHHhhCCCCcceEEecc---
Confidence            3446679999999999999999999999986433211          12346788888888742   2345555542   


Q ss_pred             ccceEEEeecCCCCh
Q 003199          605 YCNLLVYEYMPNGNL  619 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL  619 (840)
                       ..++||||++++..
T Consensus        84 -~~~lv~e~l~~~~~   97 (288)
T 3f7w_A           84 -DRTLAMEWVDERPP   97 (288)
T ss_dssp             -TTEEEEECCCCCCC
T ss_pred             -CceEEEEeecccCC
Confidence             34799999987653

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.21  E-value=0.0024  Score=69.85  Aligned_cols=79  Identities=14%  Similarity=0.105  Sum_probs=47.4

Q ss_pred             CCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccC---CCCccccchhHHHHHHH
Q 003199          655 SPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS---KATTKCDVYSFGVVLME  731 (840)
Q Consensus       655 ~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~slG~il~e  731 (840)
                      ..++|+|++|.|||++.++ ++++||+.+..-..  ..+.......-...|.+|+.....   ......++.+....+|+
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p--~~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPM--GFDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWN  308 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEEECH--HHHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHH
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCcccccCch--HHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHH
Confidence            7899999999999999876 99999998754211  000000000011346666544311   12234555677888888


Q ss_pred             HHhCC
Q 003199          732 LITGR  736 (840)
Q Consensus       732 l~tg~  736 (840)
                      .++++
T Consensus       309 ~y~~~  313 (420)
T 2pyw_A          309 LFNKR  313 (420)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.19  E-value=0.00015  Score=69.14  Aligned_cols=62  Identities=18%  Similarity=0.239  Sum_probs=26.4

Q ss_pred             CCCCcEEEeecccccccc----chhhhcCCCCCEEEccCC---cCcc----cCCcCCCCCCCcceeccccccc
Q 003199          164 LPKLRVLQLYNNSLSGEI----SSVIANSTTLTMLSLYDN---SLTG----EVPQDLGQWSPLVVLDLSENKL  225 (840)
Q Consensus       164 l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N---~l~~----~~~~~l~~l~~L~~L~L~~N~l  225 (840)
                      -+.|++|+|++|.|.+..    ..++...+.|++|+|++|   .+..    .+...+..-++|+.|+++.|.+
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            344555555555544221    223333444555555543   2221    1122333344555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.07  E-value=0.00061  Score=60.61  Aligned_cols=58  Identities=22%  Similarity=0.296  Sum_probs=46.1

Q ss_pred             cEEEcCCCccC-CCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccc
Q 003199          336 VKIDLSDNLLS-GPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG  395 (840)
Q Consensus       336 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  395 (840)
                      ..++.+++.|+ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36788888886 34565443  468899999999987778888999999999999999875

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.07  E-value=0.0011  Score=72.51  Aligned_cols=73  Identities=22%  Similarity=0.344  Sum_probs=48.3

Q ss_pred             cCeeeccCCcEEEEEEeCC--------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCc-ceeeeEE
Q 003199          531 KNKVGQGGSGTVYKIDLNS--------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNI-VKLYCYF  601 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~  601 (840)
                      .+.|+.|....||++...+        ++.+++|+......            ...+..|..+++.+...++ .++++.+
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~------------~~~li~E~~~l~~L~~~g~~P~l~~~~  145 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET------------ESHLVAESVIFTLLSERHLGPKLYGIF  145 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC------------HHHHHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCc------------HHHHHHHHHHHHHHHhCCCCCcEEEEe
Confidence            3468889899999997653        57899998732110            1234468888887753333 5667665


Q ss_pred             ecCccceEEEeecCCCCh
Q 003199          602 SSLYCNLLVYEYMPNGNL  619 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL  619 (840)
                      .+    .+|+||++|.++
T Consensus       146 ~~----g~v~e~l~G~~l  159 (429)
T 1nw1_A          146 SG----GRLEEYIPSRPL  159 (429)
T ss_dssp             TT----EEEECCCCEEEC
T ss_pred             CC----CEEEEEeCCccc
Confidence            43    389999986443

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.04  E-value=0.001  Score=69.20  Aligned_cols=71  Identities=7%  Similarity=0.019  Sum_probs=43.0

Q ss_pred             cCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCc-ceeeeEEecCccceE
Q 003199          531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNI-VKLYCYFSSLYCNLL  609 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~l  609 (840)
                      .+.|+.|....+|++     +.+++|+........           -...+|+.+++.+....+ .+++++.  .+..++
T Consensus        23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~-----------~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~   84 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY-----------INRANEAVAAREAAKAGVSPEVLHVD--PATGVM   84 (301)
T ss_dssp             CEEEESCSSEEEEEE-----TTEEEEEECC----C-----------CCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCE
T ss_pred             eeEcCCcccccccee-----eeEEEECCCCCccce-----------eCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEE
Confidence            567999999999998     558888774321110           112357777766643333 4555543  334579


Q ss_pred             EEeec-CCCCh
Q 003199          610 VYEYM-PNGNL  619 (840)
Q Consensus       610 V~e~~-~~gsL  619 (840)
                      |+||+ ++.++
T Consensus        85 v~e~i~~g~~l   95 (301)
T 3dxq_A           85 VTRYIAGAQTM   95 (301)
T ss_dssp             EEECCTTCEEC
T ss_pred             EEeecCCCccC
Confidence            99999 55444

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.90  E-value=0.0013  Score=69.58  Aligned_cols=31  Identities=32%  Similarity=0.402  Sum_probs=26.6

Q ss_pred             CCeEecCCCCCCEEEcCC----CCCeeecccchhh
Q 003199          655 SPIIHRDIKSTNILLDVN----YQPKVADFGIAKV  685 (840)
Q Consensus       655 ~~ivH~Dlk~~Nill~~~----~~~kl~Dfg~a~~  685 (840)
                      ..++|||+.+.|||++.+    +.+.|+||+.+..
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            579999999999999874    6789999998753

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.87  E-value=0.0018  Score=69.26  Aligned_cols=138  Identities=20%  Similarity=0.167  Sum_probs=80.7

Q ss_pred             CeeeccCCcEEEEEEeC--------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEe
Q 003199          532 NKVGQGGSGTVYKIDLN--------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFS  602 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~  602 (840)
                      +.+..|-...+|++...        +++.+++|+.-. .          ......+.+|..+++.+. +.-..++++++.
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~-~----------~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~  124 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA-I----------LQGVDSLVLESVMFAILAERSLGPQLYGVFP  124 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC--------------CCHHHHHHHHHHHHHHHHTTSSCCEEEEET
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC-c----------cchHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence            46777888999998764        257899998521 1          011344568888888874 332356676665


Q ss_pred             cCccceEEEeecCCCChHH-----------------HhhcCC----CCCC--hHHHHHHHHHHHH---------------
Q 003199          603 SLYCNLLVYEYMPNGNLWD-----------------ALHKGL----VHLD--WPTRHKIAFGVAQ---------------  644 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~-----------------~l~~~~----~~~~--~~~~~~i~~~i~~---------------  644 (840)
                      +    .+||||++|..+..                 .+|...    ....  |.++.++..++..               
T Consensus       125 ~----g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~  200 (379)
T 3feg_A          125 E----GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMY  200 (379)
T ss_dssp             T----EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHT
T ss_pred             C----ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhH
Confidence            4    39999998755431                 112211    1122  4455555443321               


Q ss_pred             ----HHHHHh----h-cCCCCeEecCCCCCCEEEcCC----CCCeeecccchh
Q 003199          645 ----GLAYLH----H-GLLSPIIHRDIKSTNILLDVN----YQPKVADFGIAK  684 (840)
Q Consensus       645 ----~l~~LH----~-~~~~~ivH~Dlk~~Nill~~~----~~~kl~Dfg~a~  684 (840)
                          .++.|.    . .....++|+|+.+.||+++.+    +.+.++||..|.
T Consensus       201 ~l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          201 SLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             THHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence                223332    2 122468999999999999876    688999999874

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.64  E-value=0.002  Score=67.66  Aligned_cols=140  Identities=12%  Similarity=0.093  Sum_probs=76.3

Q ss_pred             CeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCC--cceeeeE------Eec
Q 003199          532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN--IVKLYCY------FSS  603 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~------~~~  603 (840)
                      +.|+.|....+|++...+| .+++|+......            ...+..|+.++..+....  +.+++..      ...
T Consensus        28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~~------------~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~   94 (322)
T 2ppq_A           28 KGIAEGVENSNFLLHTTKD-PLILTLYEKRVE------------KNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGEL   94 (322)
T ss_dssp             EEECC---EEEEEEEESSC-CEEEEEECC---------------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEE
T ss_pred             eccCCCcccceEEEEeCCc-cEEEEEeCCCCC------------HHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEE
Confidence            4567788899999987655 678898743110            123445666666664222  2333321      112


Q ss_pred             CccceEEEeecCCCChHH--------------HhhcCCCC-----------CChHHHHH------------HHHHHHHHH
Q 003199          604 LYCNLLVYEYMPNGNLWD--------------ALHKGLVH-----------LDWPTRHK------------IAFGVAQGL  646 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~--------------~l~~~~~~-----------~~~~~~~~------------i~~~i~~~l  646 (840)
                      .+..++|++|++|..+..              .++.....           ..|.....            +...+...+
T Consensus        95 ~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~  174 (322)
T 2ppq_A           95 SGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEI  174 (322)
T ss_dssp             TTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHH
T ss_pred             CCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            345689999998754311              12211000           01322110            011234455


Q ss_pred             HHHhhc----CCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          647 AYLHHG----LLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       647 ~~LH~~----~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ++++..    ...+++|+|+.+.||+++.+..+.|+||+.+.
T Consensus       175 ~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          175 DYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             HHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            555532    23578999999999999987656799998764

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.58  E-value=0.008  Score=63.15  Aligned_cols=138  Identities=13%  Similarity=0.132  Sum_probs=77.3

Q ss_pred             eeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCC--CcceeeeE-----EecCc
Q 003199          533 KVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHK--NIVKLYCY-----FSSLY  605 (840)
Q Consensus       533 ~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~-----~~~~~  605 (840)
                      .++ |....||++...+|+.+++|.......           ....+..|..+++.+...  .+++++..     ....+
T Consensus        33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~-----------~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g  100 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDEDRRRFVVKFYRPERW-----------TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQG  100 (328)
T ss_dssp             EEC-CSSSEEEEECCTTCCCEEEEEECTTTS-----------CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETT
T ss_pred             eec-CcccceEEEEcCCCCEEEEEEcCCCCC-----------CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECC
Confidence            466 888899998777787899998742211           123455677777766422  23444443     11234


Q ss_pred             cceEEEeecCCCChH-----H---------HhhcC--------CCCCChHHH----HHH---------------HHHHHH
Q 003199          606 CNLLVYEYMPNGNLW-----D---------ALHKG--------LVHLDWPTR----HKI---------------AFGVAQ  644 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~-----~---------~l~~~--------~~~~~~~~~----~~i---------------~~~i~~  644 (840)
                      ..++||||++|..+.     .         .++..        ....++...    ..+               ...+..
T Consensus       101 ~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  180 (328)
T 1zyl_A          101 FYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDE  180 (328)
T ss_dssp             EEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHH
T ss_pred             EEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence            457899999875432     0         11110        011222111    001               111112


Q ss_pred             HHHHHhhc----CCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          645 GLAYLHHG----LLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       645 ~l~~LH~~----~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      .++.+...    ....++|+|+++.||+++ + .+.++||+.+.
T Consensus       181 ~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~  222 (328)
T 1zyl_A          181 LIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR  222 (328)
T ss_dssp             HHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred             HHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence            23333221    225688999999999999 4 78999998764

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.55  E-value=0.0063  Score=66.83  Aligned_cols=74  Identities=18%  Similarity=0.166  Sum_probs=46.1

Q ss_pred             cCeeeccCCcEEEEEEeCC-CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCc-ceeeeEEecCccce
Q 003199          531 KNKVGQGGSGTVYKIDLNS-GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNI-VKLYCYFSSLYCNL  608 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~  608 (840)
                      .+.|+.|-...+|++...+ +..+++|+..... ..   ..       ...+|..+++.+...++ .++++++..    .
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-~~---~i-------dR~~E~~vl~~L~~~gl~P~ll~~~~~----G  177 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKT-DE---II-------NREREKKISCILYNKNIAKKIYVFFTN----G  177 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEECC-C-CS---CS-------CHHHHHHHHHHHTTSSSBCCEEEEETT----E
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEECCCCh-hh---hc-------CHHHHHHHHHHHHhcCCCCCEEEEeCC----e
Confidence            3468889999999998765 4788888763211 10   00       01468888888864444 567776632    3


Q ss_pred             EEEeecCCCCh
Q 003199          609 LVYEYMPNGNL  619 (840)
Q Consensus       609 lV~e~~~~gsL  619 (840)
                      +||||++|.++
T Consensus       178 ~v~e~I~G~~l  188 (458)
T 2qg7_A          178 RIEEFMDGYAL  188 (458)
T ss_dssp             EEEECCCSEEC
T ss_pred             EEEEeeCCccC
Confidence            69999987444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.54  E-value=0.0032  Score=55.86  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=18.1

Q ss_pred             CCcEEEeeccccccccchhhhcCCCCCEEEccCCcC
Q 003199          166 KLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSL  201 (840)
Q Consensus       166 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  201 (840)
                      +|+.|+|++|+|+.+.++.|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            345555555555544444455555555555555544

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.34  E-value=0.0032  Score=67.48  Aligned_cols=73  Identities=12%  Similarity=0.157  Sum_probs=42.4

Q ss_pred             CeeeccCCcEEEEEEeCC---------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCC-cceeeeEE
Q 003199          532 NKVGQGGSGTVYKIDLNS---------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN-IVKLYCYF  601 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~  601 (840)
                      +.++.|....+|++...+         ++.+++|+........           .....|.++++.+...+ +.++++..
T Consensus        39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~-----------~~~~~E~~~l~~L~~~g~~P~~~~~~  107 (369)
T 3c5i_A           39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDEL-----------YNTISEFEVYKTMSKYKIAPQLLNTF  107 (369)
T ss_dssp             EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGT-----------SCHHHHHHHHHHHHHTTSSCCEEEEE
T ss_pred             EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccce-----------ecHHHHHHHHHHHHhcCCCCceEEec
Confidence            467888889999987654         2688888763321110           01346777777775333 34666544


Q ss_pred             ecCccceEEEeecCCCCh
Q 003199          602 SSLYCNLLVYEYMPNGNL  619 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL  619 (840)
                          ..++||||++|..+
T Consensus       108 ----~~~~v~e~i~G~~l  121 (369)
T 3c5i_A          108 ----NGGRIEEWLYGDPL  121 (369)
T ss_dssp             ----TTEEEEECCCSEEC
T ss_pred             ----CCcEEEEEecCCcC
Confidence                23789999987543

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=96.22  E-value=0.025  Score=54.04  Aligned_cols=101  Identities=14%  Similarity=0.079  Sum_probs=67.0

Q ss_pred             CChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcce
Q 003199          617 GNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT  696 (840)
Q Consensus       617 gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  696 (840)
                      -+|.+.|......++++++|.++.|.+.+|.-.-..  +.-..+=+.|..|++..+|.+...+ +.+.            
T Consensus        33 vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~--~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~------------   97 (229)
T 2yle_A           33 LSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARR--RQPRHRVRSAAQIRVWRDGAVTLAP-AADD------------   97 (229)
T ss_dssp             EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT--TCCCCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred             ccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhc--ccCCceecCCcceEEecCCceeccc-cccc------------
Confidence            478999998888999999999999999998776221  1111233456889999999887663 1110            


Q ss_pred             ecccccccccCccccccCCCCccccchhHHHHHHHHHhCC
Q 003199          697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR  736 (840)
Q Consensus       697 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~  736 (840)
                         .....+.|||... ...+.+.=|||+|+++|.-+-=.
T Consensus        98 ---~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDyg  133 (229)
T 2yle_A           98 ---AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYG  133 (229)
T ss_dssp             ------------CCSS-SSSCHHHHHHHHHHHHHHHHTTT
T ss_pred             ---ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcC
Confidence               1122456888653 45678899999999999988633

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=95.88  E-value=0.019  Score=60.49  Aligned_cols=31  Identities=19%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             CCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          655 SPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       655 ~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|+|+.+.||+++.++.+.++||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            4689999999999999888899999987643

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=95.19  E-value=0.024  Score=61.32  Aligned_cols=74  Identities=9%  Similarity=0.127  Sum_probs=46.1

Q ss_pred             cCeeeccCCcEEEEEEeCC--------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCC-cceeeeEE
Q 003199          531 KNKVGQGGSGTVYKIDLNS--------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN-IVKLYCYF  601 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~  601 (840)
                      .+.+..|-...+|+....+        ++.+++|+..... .. .  .       +..+|..+++.+...+ ..++++.+
T Consensus        75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~-~--i-------dR~~E~~~l~~L~~~gi~P~l~~~~  143 (424)
T 3mes_A           75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GK-F--Y-------DSKVELDVFRYLSNINIAPNIIADF  143 (424)
T ss_dssp             EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--C-C--C-------CHHHHHHHHHHHHHTTSSCCEEEEE
T ss_pred             EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-ch-h--c-------CHHHHHHHHHHHHhcCCCCCEEEEc
Confidence            3467788899999987653        5789998863221 11 0  0       1245777777774222 34556543


Q ss_pred             ecCccceEEEeecCCCCh
Q 003199          602 SSLYCNLLVYEYMPNGNL  619 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL  619 (840)
                      .    .++||||++|..+
T Consensus       144 ~----~~~I~efI~G~~l  157 (424)
T 3mes_A          144 P----EGRIEEFIDGEPL  157 (424)
T ss_dssp             T----TEEEEECCCSEEC
T ss_pred             C----CCEEEEEeCCccC
Confidence            2    3789999998653

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=92.42  E-value=0.14  Score=55.09  Aligned_cols=29  Identities=28%  Similarity=0.380  Sum_probs=24.2

Q ss_pred             eEecCCCCCCEEE------cCCCCCeeecccchhh
Q 003199          657 IIHRDIKSTNILL------DVNYQPKVADFGIAKV  685 (840)
Q Consensus       657 ivH~Dlk~~Nill------~~~~~~kl~Dfg~a~~  685 (840)
                      ++|+|+.+.||++      +++..++++||.+|..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            5799999999999      3456789999998743

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=83.57  E-value=1.4  Score=29.75  Aligned_cols=11  Identities=36%  Similarity=0.564  Sum_probs=5.1

Q ss_pred             HHHhhhhhccc
Q 003199          481 LLLFLKRRFSK  491 (840)
Q Consensus       481 ~~~~~~~r~~~  491 (840)
                      +++|++||+.+
T Consensus        31 ~~~~~RRR~~~   41 (44)
T 2jwa_A           31 FGILIKRRQQK   41 (44)
T ss_dssp             HHHHHHHHCSC
T ss_pred             HHhheehhhhh
Confidence            34455555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	840
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	4e-68
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	8e-62
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-60
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	8e-60
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-59
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-59
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	4e-59
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	6e-59
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-58
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-58
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-58
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-58
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-57
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-57
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	4e-57
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-56
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-56
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-56
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-55
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-55
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	7e-55
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	9e-55
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-53
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-52
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-52
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-52
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-52
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	5e-52
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-50
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-50
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-49
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-49
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	8e-49
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-48
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	7e-48
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-47
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-46
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-45
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-45
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-44
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-44
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	3e-44
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-44
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	8e-44
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-43
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	6e-43
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	9e-43
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-42
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-42
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-41
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-40
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-40
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-40
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	7e-39
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-36
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-36
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-36
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-36
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-34
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-33
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-31
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-30
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-24
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-23
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	1e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	9e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  225 bits (574), Expect = 4e-68
 Identities = 82/294 (27%), Positives = 129/294 (43%), Gaps = 34/294 (11%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           I   Q  + +      ++G G  GTVYK   +    VAVK L      V+A    QLQ  
Sbjct: 5   IPDGQITVGQ------RIGSGSFGTVYKGKWHGD--VAVKML-----NVTAPTPQQLQA- 50

Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
              K EV  L   RH NI+    Y ++     +V ++    +L+  LH      +     
Sbjct: 51  --FKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI 107

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
            IA   AQG+ YLH      IIHRD+KS NI L  +   K+ DFG+A V   R       
Sbjct: 108 DIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS-RWSGSHQF 163

Query: 697 TVIAGTYGYLAPEYAYSSKA---TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
             ++G+  ++APE          + + DVY+FG+VL EL+TG+ P  +   +N++ I ++
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI--NNRDQIIFM 221

Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                   G +     K+  +    M +++     C  K    RP   +++  +
Sbjct: 222 -----VGRGYLSPDLSKVRSNCPKAMKRLMA---ECLKKKRDERPLFPQILASI 267

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  207 bits (529), Expect = 8e-62
 Identities = 67/294 (22%), Positives = 121/294 (41%), Gaps = 38/294 (12%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           +  +  +++E      ++G G  G V+    N    VAVK L     K  +   D     
Sbjct: 10  VPRETLKLVE------RLGAGQFGEVWMGYYNGHTKVAVKSL-----KQGSMSPDAFL-- 56

Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-GLVHLDWPTR 635
                E   +  ++H+ +V+LY   +      ++ EYM NG+L D L     + L     
Sbjct: 57  ----AEANLMKQLQHQRLVRLYAVVTQEPI-YIITEYMENGSLVDFLKTPSGIKLTINKL 111

Query: 636 HKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST 695
             +A  +A+G+A++        IHRD+++ NIL+      K+ADFG+A++++    + + 
Sbjct: 112 LDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE--DNEYTA 166

Query: 696 TTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI 755
                    + APE       T K DV+SFG++L E++T  +        N  +I  +  
Sbjct: 167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM-TNPEVIQNL-- 223

Query: 756 KVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
               + G   V                  +   C  + P  RPT + +  +L +
Sbjct: 224 ----ERGYRMVRPDNCPEELYQ-------LMRLCWKERPEDRPTFDYLRSVLED 266

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  202 bits (516), Expect = 4e-60
 Identities = 64/293 (21%), Positives = 121/293 (41%), Gaps = 36/293 (12%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           I   +   ++      ++G G  G V+     + + VA+K +            +    +
Sbjct: 2   IDPSELTFVQ------EIGSGQFGLVHLGYWLNKDKVAIKTI-----------REGAMSE 44

Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
           +    E E +  + H  +V+LY          LV+E+M +G L D L          T  
Sbjct: 45  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLL 104

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
            +   V +G+AYL     + +IHRD+ + N L+  N   KV+DFG+ + +     + +++
Sbjct: 105 GMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVL--DDQYTSS 159

Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK 756
           T       + +PE    S+ ++K DV+SFGV++ E+ +  K   ++   N  ++  +   
Sbjct: 160 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-SNSEVVEDI--- 215

Query: 757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
                G      +  S            I   C  + P  RP  + +++ LAE
Sbjct: 216 ---STGFRLYKPRLASTHVYQ-------IMNHCWKERPEDRPAFSRLLRQLAE 258

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  203 bits (517), Expect = 8e-60
 Identities = 68/301 (22%), Positives = 119/301 (39%), Gaps = 36/301 (11%)

Query: 531 KNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +  +G+G  G V++     GE VAVK   S+  +               + E+     +R
Sbjct: 8   QESIGKGRFGEVWRGKWR-GEEVAVKIFSSREER-----------SWFREAEIYQTVMLR 55

Query: 591 HKNIVKLYCYFS----SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           H+NI+      +    +     LV +Y  +G+L+D L++    +      K+A   A GL
Sbjct: 56  HENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGL 113

Query: 647 AYLHHGLLS-----PIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST-TTVIA 700
           A+LH  ++       I HRD+KS NIL+  N    +AD G+A    +             
Sbjct: 114 AHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRV 173

Query: 701 GTYGYLAPEYAYSS------KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
           GT  Y+APE    S      ++  + D+Y+ G+V  E+                    V 
Sbjct: 174 GTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP 233

Query: 755 IKVDTKEGIMEVLDKKLSGSFRD------EMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
                +E    V ++KL  +  +       +  + +I   C   + A R T   + + L+
Sbjct: 234 SDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 293

Query: 809 E 809
           +
Sbjct: 294 Q 294

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  203 bits (518), Expect = 1e-59
 Identities = 72/306 (23%), Positives = 124/306 (40%), Gaps = 52/306 (16%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           +++G G  G V+K     SG V+A K +  +             +   +  E++ L    
Sbjct: 12  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKP---------AIRNQIIRELQVLHECN 62

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
              IV  Y  F S     +  E+M  G+L   L K    +      K++  V +GL YL 
Sbjct: 63  SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLR 121

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 I+HRD+K +NIL++   + K+ DFG++  L      DS      GT  Y++PE 
Sbjct: 122 EKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI-----DSMANSFVGTRSYMSPER 174

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE--------- 761
              +  + + D++S G+ L+E+  GR P+         +++   ++ D  E         
Sbjct: 175 LQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPG 234

Query: 762 --------------GIMEVLDKKL--------SGSFRDEMIQVLRIAIRCTSKSPATRPT 799
                          I E+LD  +        SG F  E    +    +C  K+PA R  
Sbjct: 235 RPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVN---KCLIKNPAERAD 291

Query: 800 MNEVVQ 805
           + +++ 
Sbjct: 292 LKQLMV 297

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  202 bits (514), Expect = 1e-59
 Identities = 56/282 (19%), Positives = 109/282 (38%), Gaps = 32/282 (11%)

Query: 530 EKNKVGQGGSGTVYK---IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
              ++G G  G+V +           VA+K L   +     +DT+++        E + +
Sbjct: 13  ADIELGCGNFGSVRQGVYRMRKKQIDVAIKVL---KQGTEKADTEEMM------REAQIM 63

Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
             + +  IV+L     +    +LV E    G L   L      +      ++   V+ G+
Sbjct: 64  HQLDNPYIVRLIGVCQAEAL-MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGM 122

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            YL        +HRD+ + N+LL   +  K++DFG++K L A     +  +       + 
Sbjct: 123 KYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWY 179

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           APE     K +++ DV+S+GV + E ++ G+KP +        ++ ++      ++G   
Sbjct: 180 APECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFI------EQGKRM 231

Query: 766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
               +              +   C       RP    V Q +
Sbjct: 232 ECPPECPPELYA-------LMSDCWIYKWEDRPDFLTVEQRM 266

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  200 bits (510), Expect = 4e-59
 Identities = 67/282 (23%), Positives = 108/282 (38%), Gaps = 32/282 (11%)

Query: 530 EKNKVGQGGSGTVYK---IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
           E  ++G G  GTV K         + VAVK L     K  A+D         L  E   +
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKIL-----KNEANDPALKDE---LLAEANVM 62

Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
             + +  IV++     +    +LV E    G L   L +   H+      ++   V+ G+
Sbjct: 63  QQLDNPYIVRMIGICEA-ESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGM 120

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            YL     S  +HRD+ + N+LL   +  K++DFG++K L+A        T       + 
Sbjct: 121 KYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY 177

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           APE     K ++K DV+SFGV++ E  + G+KP          +   +      ++G   
Sbjct: 178 APECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--KGSEVTAML------EKGERM 229

Query: 766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                      D       +   C +     RP    V   L
Sbjct: 230 GCPAGCPREMYD-------LMNLCWTYDVENRPGFAAVELRL 264

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  200 bits (509), Expect = 6e-59
 Identities = 78/293 (26%), Positives = 127/293 (43%), Gaps = 33/293 (11%)

Query: 517 ISFDQREI-LEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQL 575
           ++ D  EI  E++  + K+GQG  G V+    N    VA+K L                 
Sbjct: 7   LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-----------KPGTMS 55

Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH-KGLVHLDWPT 634
            +    E + +  +RH+ +V+LY   S      +V EYM  G+L D L  +   +L  P 
Sbjct: 56  PEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQ 114

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
              +A  +A G+AY+        +HRD+++ NIL+  N   KVADFG+A++++    + +
Sbjct: 115 LVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE--DNEYT 169

Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
                     + APE A   + T K DV+SFG++L EL T  +        N+ ++  V 
Sbjct: 170 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-VNREVLDQV- 227

Query: 755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                + G       +   S  D       +  +C  K P  RPT   +   L
Sbjct: 228 -----ERGYRMPCPPECPESLHD-------LMCQCWRKEPEERPTFEYLQAFL 268

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  198 bits (505), Expect = 2e-58
 Identities = 66/285 (23%), Positives = 115/285 (40%), Gaps = 40/285 (14%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             +G G  G   K    + G+++  K+L       S ++ ++    + L +EV  L  ++
Sbjct: 10  YTIGTGSYGRCQKIRRKSDGKILVWKEL----DYGSMTEAEK----QMLVSEVNLLRELK 61

Query: 591 HKNIVKLYCYF-----SSLYCNLLVYEYMPNGNLWDALHKGL---VHLDWPTRHKIAFGV 642
           H NIV+ Y        ++LY   +V EY   G+L   + KG     +LD     ++   +
Sbjct: 62  HPNIVRYYDRIIDRTNTTLY---IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQL 118

Query: 643 AQGLAYLH--HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIA 700
              L   H        ++HRD+K  N+ LD     K+ DFG+A++L       S      
Sbjct: 119 TLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNH---DTSFAKAFV 175

Query: 701 GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK 760
           GT  Y++PE         K D++S G +L EL     P        K +   +      +
Sbjct: 176 GTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF--SQKELAGKI------R 227

Query: 761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           EG    +  + S    +       I  R  +     RP++ E+++
Sbjct: 228 EGKFRRIPYRYSDELNE-------IITRMLNLKDYHRPSVEEILE 265

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  197 bits (503), Expect = 2e-58
 Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 44/293 (15%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           ++  + ++L+       +G+G  G V   D   G  VAVK + +  T             
Sbjct: 4   LNMKELKLLQ------TIGKGEFGDVMLGDYR-GNKVAVKCIKNDATA------------ 44

Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNL-LVYEYMPNGNLWDALH-KGLVHLDWPT 634
           +    E   +  +RH N+V+L          L +V EYM  G+L D L  +G   L    
Sbjct: 45  QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC 104

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
             K +  V + + YL     +  +HRD+ + N+L+  +   KV+DFG+ K         S
Sbjct: 105 LLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA------SS 155

Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
           T         + APE     K +TK DV+SFG++L E+ +  +         K+++  V 
Sbjct: 156 TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDVVPRV- 213

Query: 755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                ++G           +  +       +   C     A RP+  ++ + L
Sbjct: 214 -----EKGYKMDAPDGCPPAVYE-------VMKNCWHLDAAMRPSFLQLREQL 254

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  197 bits (502), Expect = 4e-58
 Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 35/281 (12%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
             ++G+G   TVYK +D  +   VA  +L  Q  K++ S+  +       K E E L  +
Sbjct: 14  DIEIGRGSFKTVYKGLDTETTVEVAWCEL--QDRKLTKSERQRF------KEEAEMLKGL 65

Query: 590 RHKNIVKLYCYFSSL----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
           +H NIV+ Y  + S      C +LV E M +G L   L +    +           + +G
Sbjct: 66  QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKG 124

Query: 646 LAYLHHGLLSPIIHRDIKSTNILL-DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYG 704
           L +LH     PIIHRD+K  NI +       K+ D G+A + +      S    + GT  
Sbjct: 125 LQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR-----ASFAKAVIGTPE 178

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++APE  Y  K     DVY+FG+ ++E+ T   P  +              +  T     
Sbjct: 179 FMAPEM-YEEKYDESVDVYAFGMCMLEMATSEYPYSECQNA------AQIYRRVTSGVKP 231

Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
              DK      ++       I   C  ++   R ++ +++ 
Sbjct: 232 ASFDKVAIPEVKE-------IIEGCIRQNKDERYSIKDLLN 265

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  197 bits (501), Expect = 5e-58
 Identities = 74/275 (26%), Positives = 117/275 (42%), Gaps = 33/275 (12%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             +G+G  G VY   +  S  ++A+K L         +  ++  ++  L+ EVE   ++R
Sbjct: 12  RPLGKGKFGNVYLAREKQSKFILALKVL-------FKAQLEKAGVEHQLRREVEIQSHLR 64

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H NI++LY YF       L+ EY P G ++  L K     D          +A  L+Y H
Sbjct: 65  HPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANALSYCH 123

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 +IHRDIK  N+LL    + K+ADFG +          S  T + GT  YL PE 
Sbjct: 124 S---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAP-----SSRRTTLCGTLDYLPPEM 175

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
                   K D++S GV+  E + G+ P E    +     Y    +V+            
Sbjct: 176 IEGRMHDEKVDLWSLGVLCYEFLVGKPPFE---ANTYQETYKRISRVEFT------FPDF 226

Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           ++   RD       +  R    +P+ RP + EV++
Sbjct: 227 VTEGARD-------LISRLLKHNPSQRPMLREVLE 254

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  196 bits (500), Expect = 1e-57
 Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 35/297 (11%)

Query: 515 HRISFDQREI-LEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQ 572
              ++D+ E+    +T K+K+G G  G VY+ +       VAVK L     +V       
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV------- 57

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH-KGLVHLD 631
               +    E   +  I+H N+V+L    +      ++ E+M  GNL D L       + 
Sbjct: 58  ----EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 113

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGG 691
                 +A  ++  + YL        IHRD+ + N L+  N+  KVADFG+++++   G 
Sbjct: 114 AVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT--GD 168

Query: 692 KDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIY 751
             +          + APE    +K + K DV++FGV+L E+ T           ++    
Sbjct: 169 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ---- 224

Query: 752 WVSIKVDTKEGIMEVLDKKLSGSFRDEMI-QVLRIAIRCTSKSPATRPTMNEVVQLL 807
                      + E+L+K       +    +V  +   C   +P+ RP+  E+ Q  
Sbjct: 225 -----------VYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAF 270

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (495), Expect = 2e-57
 Identities = 55/293 (18%), Positives = 110/293 (37%), Gaps = 36/293 (12%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLD 576
           I       L+      ++G G  G V          VA+K +            +    +
Sbjct: 1   IDPKDLTFLK------ELGTGQFGVVKYGKWRGQYDVAIKMI-----------KEGSMSE 43

Query: 577 KGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
                E + + N+ H+ +V+LY   +      ++ EYM NG L + L +           
Sbjct: 44  DEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLL 103

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
           ++   V + + YL        +HRD+ + N L++     KV+DFG+++ +     + +++
Sbjct: 104 EMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL--DDEYTSS 158

Query: 697 TVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK 756
                   +  PE    SK ++K D+++FGV++ E+ +  K   + F  N      +   
Sbjct: 159 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF-TNSETAEHI--- 214

Query: 757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
               +G+        S            I   C  +    RPT   ++  + +
Sbjct: 215 ---AQGLRLYRPHLASEKVYT-------IMYSCWHEKADERPTFKILLSNILD 257

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (495), Expect = 4e-57
 Identities = 70/298 (23%), Positives = 111/298 (37%), Gaps = 34/298 (11%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYK----IDLNSGEVVAVKKLWSQRTKVSASDTDQ 572
           I      +LE      K+G G  G V +            VAVK L             Q
Sbjct: 5   IGEKDLRLLE------KLGDGSFGVVRRGEWDAPSGKTVSVAVKCL-------KPDVLSQ 51

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
            +       EV  + ++ H+N+++LY    +     +V E  P G+L D L K   H   
Sbjct: 52  PEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMKMVTELAPLGSLLDRLRKHQGHFLL 110

Query: 633 PTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
            T  + A  VA+G+ YL        IHRD+ + N+LL      K+ DFG+ + L      
Sbjct: 111 GTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 167

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
                     + + APE   +   +   D + FGV L E+ T  +       +   I++ 
Sbjct: 168 YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-NGSQILHK 226

Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
           +      KEG      +       +       + ++C +  P  RPT   +   L EA
Sbjct: 227 I-----DKEGERLPRPEDCPQDIYN-------VMVQCWAHKPEDRPTFVALRDFLLEA 272

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  194 bits (493), Expect = 2e-56
 Identities = 63/299 (21%), Positives = 122/299 (40%), Gaps = 34/299 (11%)

Query: 518 SFDQREILEAMTEKNKVGQGGSGTVYK----IDLNSGEVVAVKKLWSQRTKVSASDTDQL 573
            F +   +  +  +  +G G  G V      +       VA+K L S  T+         
Sbjct: 18  EFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTE--------- 68

Query: 574 QLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWP 633
           +  +   +E   +G   H N++ L    +     +++ E+M NG+L   L +        
Sbjct: 69  KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVI 128

Query: 634 TRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKD 693
               +  G+A G+ YL        +HRD+ + NIL++ N   KV+DFG+++ L+      
Sbjct: 129 QLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 185

Query: 694 STTTVIA--GTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNII 750
           + T+ +       + APE     K T+  DV+S+G+V+ E+++ G +P  D    N+++I
Sbjct: 186 TYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM--TNQDVI 243

Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
             +      ++            +          + + C  K    RP   ++V  L +
Sbjct: 244 NAI------EQDYRLPPPMDCPSALHQ-------LMLDCWQKDRNHRPKFGQIVNTLDK 289

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  192 bits (488), Expect = 5e-56
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 33/287 (11%)

Query: 529 TEKNKVGQGGSGTVYKIDLNSGE-----VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEV 583
           T +  +G G  G VYK  L +        VA+K L     K   ++  ++        E 
Sbjct: 10  TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTL-----KAGYTEKQRVDF----LGEA 60

Query: 584 ETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVA 643
             +G   H NI++L    S     +++ EYM NG L   L +            +  G+A
Sbjct: 61  GIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIA 120

Query: 644 QGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTY 703
            G+ YL +      +HRD+ + NIL++ N   KV+DFG+++VL+       TT+      
Sbjct: 121 AGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPI 177

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI 763
            + APE     K T+  DV+SFG+V+ E++T  +    +                +   +
Sbjct: 178 RWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWE---------------LSNHEV 222

Query: 764 MEVLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           M+ ++         D    + ++ ++C  +  A RP   ++V +L +
Sbjct: 223 MKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDK 269

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  192 bits (490), Expect = 7e-56
 Identities = 69/281 (24%), Positives = 113/281 (40%), Gaps = 36/281 (12%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           ++  ++G G  G VY   D+ + EVVA+KK+    +       ++ Q    +  EV  L 
Sbjct: 18  SDLREIGHGSFGAVYFARDVRNSEVVAIKKM----SYSGKQSNEKWQD---IIKEVRFLQ 70

Query: 588 NIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
            +RH N ++    +   +   LV EY                L       +  G  QGLA
Sbjct: 71  KLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLA 129

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           YLH      +IHRD+K+ NILL      K+ DFG A ++              GT  ++A
Sbjct: 130 YLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA-------PANSFVGTPYWMA 179

Query: 708 PEYAYSS---KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           PE   +    +   K DV+S G+  +EL   + P+ +   +  + +Y +      +    
Sbjct: 180 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHI-----AQNESP 232

Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +     S  FR+           C  K P  RPT   +++
Sbjct: 233 ALQSGHWSEYFRN-------FVDSCLQKIPQDRPTSEVLLK 266

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  191 bits (487), Expect = 1e-55
 Identities = 67/305 (21%), Positives = 119/305 (39%), Gaps = 56/305 (18%)

Query: 532 NKVGQGGSGTVYK------IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVET 585
             +G+G  G V++      +      +VAVK L  + +           +    + E   
Sbjct: 19  RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASA---------DMQADFQREAAL 69

Query: 586 LGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHK-------------------- 625
           +    + NIVKL    +      L++EYM  G+L + L                      
Sbjct: 70  MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARV 129

Query: 626 ---GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI 682
              G   L    +  IA  VA G+AYL        +HRD+ + N L+  N   K+ADFG+
Sbjct: 130 SSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGL 186

Query: 683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD 742
           ++ + +     +     A    ++ PE  + ++ TT+ DV+++GVVL E+ +        
Sbjct: 187 SRNIYSADYYKADGND-AIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 245

Query: 743 FGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
                            +E I  V D  +     +  +++  +   C SK PA RP+   
Sbjct: 246 M--------------AHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCS 291

Query: 803 VVQLL 807
           + ++L
Sbjct: 292 IHRIL 296

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  190 bits (484), Expect = 2e-55
 Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 29/276 (10%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             +G+G  G V   ++  + E VAVK +  +R              + +K E+     + 
Sbjct: 11  QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV---------DCPENIKKEICINKMLN 61

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H+N+VK Y +        L  EY   G L+D +    + +  P   +    +  G+ YLH
Sbjct: 62  HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH 120

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 I HRDIK  N+LLD     K++DFG+A V +    ++     + GT  Y+APE 
Sbjct: 121 G---IGITHRDIKPENLLLDERDNLKISDFGLATVFRY-NNRERLLNKMCGTLPYVAPEL 176

Query: 711 AYSSK-ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
               +      DV+S G+VL  ++ G  P +      +    W       ++       K
Sbjct: 177 LKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK------EKKTYLNPWK 230

Query: 770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           K+  +          +  +   ++P+ R T+ ++ +
Sbjct: 231 KIDSAPLA-------LLHKILVENPSARITIPDIKK 259

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  189 bits (481), Expect = 7e-55
 Identities = 66/292 (22%), Positives = 114/292 (39%), Gaps = 41/292 (14%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D  EI+       ++G G  G VYK  +  +  + A K +          DT   +  + 
Sbjct: 12  DFWEIIG------ELGDGAFGKVYKAQNKETSVLAAAKVI----------DTKSEEELED 55

Query: 579 LKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKI 638
              E++ L +  H NIVKL   F       ++ E+   G +   + +    L       +
Sbjct: 56  YMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVV 115

Query: 639 AFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTV 698
                  L YLH    + IIHRD+K+ NIL  ++   K+ADFG++               
Sbjct: 116 CKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKN---TRTIQRRDS 169

Query: 699 IAGTYGYLAPEYAYSSKA-----TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV 753
             GT  ++APE      +       K DV+S G+ L+E+     P  +   +   ++   
Sbjct: 170 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL--NPMRVLL-- 225

Query: 754 SIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             K+   E        + S +F+D          +C  K+   R T ++++Q
Sbjct: 226 --KIAKSEPPTLAQPSRWSSNFKD-------FLKKCLEKNVDARWTTSQLLQ 268

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  189 bits (481), Expect = 9e-55
 Identities = 76/330 (23%), Positives = 127/330 (38%), Gaps = 58/330 (17%)

Query: 502 LSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAV 555
           +  +  PYD K       ++    +       +G G  G V +      I  ++   VAV
Sbjct: 7   IDPTQLPYDHK--WEFPRNRLSFGK------TLGAGAFGKVVEATAYGLIKSDAAMTVAV 58

Query: 556 KKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVYEYM 614
           K L     K SA  T++    + L +E++ L  +  H NIV L    +     L++ EY 
Sbjct: 59  KML-----KPSAHLTER----EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYC 109

Query: 615 PNGNLWDALHK-----------------GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPI 657
             G+L + L +                   + LD       ++ VA+G+A+L        
Sbjct: 110 CYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNC 166

Query: 658 IHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKAT 717
           IHRD+ + NILL      K+ DFG+A+ ++                 ++APE  ++   T
Sbjct: 167 IHRDLAARNILLTHGRITKICDFGLARDIK-NDSNYVVKGNARLPVKWMAPESIFNCVYT 225

Query: 718 TKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRD 777
            + DV+S+G+ L EL +           +      +      KEG   +  +       D
Sbjct: 226 FESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMI------KEGFRMLSPEHAPAEMYD 279

Query: 778 EMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
                  I   C    P  RPT  ++VQL+
Sbjct: 280 -------IMKTCWDADPLKRPTFKQIVQLI 302

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  184 bits (469), Expect = 4e-53
 Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 32/275 (11%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+GQG SGTVY  +D+ +G+ VA++++          +  Q    + +  E+  +   +
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQM----------NLQQQPKKELIINEILVMRENK 75

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           + NIV     +       +V EY+  G+L D + +    +D      +     Q L +LH
Sbjct: 76  NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH 133

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
               + +IHRDIKS NILL ++   K+ DFG    +     + S  + + GT  ++APE 
Sbjct: 134 S---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT---PEQSKRSTMVGTPYWMAPEV 187

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
                   K D++S G++ +E+I G  P  ++  +    +Y     + T         +K
Sbjct: 188 VTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE--NPLRALY----LIATNGTPELQNPEK 241

Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
           LS  FRD          RC       R +  E++Q
Sbjct: 242 LSAIFRD-------FLNRCLDMDVEKRGSAKELLQ 269

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  184 bits (467), Expect = 1e-52
 Identities = 63/306 (20%), Positives = 121/306 (39%), Gaps = 35/306 (11%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEV----VAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
             +G G  GTVYK + +  GE     VA+K+L          +    + +K +  E   +
Sbjct: 15  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL---------REATSPKANKEILDEAYVM 65

Query: 587 GNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
            ++ + ++ +L     +     L+ + MP G L D + +   ++           +A+G+
Sbjct: 66  ASVDNPHVCRLLGICLT-STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 124

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            YL       ++HRD+ + N+L+      K+ DFG+AK+L A   K+           ++
Sbjct: 125 NYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA-EEKEYHAEGGKVPIKWM 180

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV 766
           A E       T + DV+S+GV + EL+T      D       I   +      ++G    
Sbjct: 181 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI-PASEISSIL------EKGERLP 233

Query: 767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE--ADPCRFESCKFPNKS 824
                +            I ++C      +RP   E++   ++   DP R+   +   + 
Sbjct: 234 QPPICTIDVYM-------IMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERM 286

Query: 825 NKESSN 830
           +  S  
Sbjct: 287 HLPSPT 292

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  182 bits (462), Expect = 1e-52
 Identities = 61/297 (20%), Positives = 112/297 (37%), Gaps = 39/297 (13%)

Query: 517 ISFDQREILEAMTEKNKVGQGGSGTVYK----IDLNSGEVVAVKKLWSQRTKVSASDTDQ 572
           I  ++ E+         +G+G  G V++       N    VA+K       K   SD+ +
Sbjct: 4   IQRERIELGR------CIGEGQFGDVHQGIYMSPENPALAVAIKTC-----KNCTSDSVR 52

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDW 632
               +    E  T+    H +IVKL    +      ++ E    G L   L      LD 
Sbjct: 53  ----EKFLQEALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFLQVRKYSLDL 107

Query: 633 PTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGK 692
            +    A+ ++  LAYL        +HRDI + N+L+  N   K+ DFG+++ ++     
Sbjct: 108 ASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME--DST 162

Query: 693 DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW 752
               +       ++APE     + T+  DV+ FGV + E++            N ++I  
Sbjct: 163 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV-KNNDVIGR 221

Query: 753 VSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
           +      + G    +      +          +  +C +  P+ RP   E+   L+ 
Sbjct: 222 I------ENGERLPMPPNCPPTLYS-------LMTKCWAYDPSRRPRFTELKAQLST 265

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (465), Expect = 2e-52
 Identities = 73/313 (23%), Positives = 122/313 (38%), Gaps = 55/313 (17%)

Query: 514 FHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGE--VVAVKKLWSQRTKVSASDT 570
           +  + ++  +  +       +G+G  G V K      G     A+K++     K  AS  
Sbjct: 4   YPVLDWNDIKFQD------VIGEGNFGQVLKARIKKDGLRMDAAIKRM-----KEYASKD 52

Query: 571 DQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVH 629
           D     +    E+E L  +  H NI+ L           L  EY P+GNL D L K  V 
Sbjct: 53  DH----RDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVL 108

Query: 630 ---------------LDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQ 674
                          L        A  VA+G+ YL        IHRD+ + NIL+  NY 
Sbjct: 109 ETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYV 165

Query: 675 PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT 734
            K+ADFG+++  +         T+      ++A E    S  TT  DV+S+GV+L E+++
Sbjct: 166 AKIADFGLSRGQEV----YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 221

Query: 735 GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSP 794
                                  +  E + +    +   +  DE+  ++R   +C  + P
Sbjct: 222 LGGTPYCGMTC-----------AELYEKLPQGYRLEKPLNCDDEVYDLMR---QCWREKP 267

Query: 795 ATRPTMNEVVQLL 807
             RP+  +++  L
Sbjct: 268 YERPSFAQILVSL 280

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (464), Expect = 3e-52
 Identities = 65/285 (22%), Positives = 113/285 (39%), Gaps = 32/285 (11%)

Query: 531 KNKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETL 586
              +G+G  G VY   L          AVK L         +    +       TE   +
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL---------NRITDIGEVSQFLTEGIIM 82

Query: 587 GNIRHKNIVKLY-CYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQG 645
            +  H N++ L      S    L+V  YM +G+L + +     +            VA+G
Sbjct: 83  KDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG 142

Query: 646 LAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDST-TTVIAGTYG 704
           + +L        +HRD+ + N +LD  +  KVADFG+A+ +  +        T       
Sbjct: 143 MKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVK 199

Query: 705 YLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM 764
           ++A E   + K TTK DV+SFGV+L EL+T   P   D  +  +I  ++       +G  
Sbjct: 200 WMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-NTFDITVYL------LQGRR 252

Query: 765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAE 809
            +  +       +       + ++C       RP+ +E+V  ++ 
Sbjct: 253 LLQPEYCPDPLYE-------VMLKCWHPKAEMRPSFSELVSRISA 290

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  182 bits (463), Expect = 5e-52
 Identities = 63/331 (19%), Positives = 113/331 (34%), Gaps = 63/331 (19%)

Query: 507 FPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAVKKLWS 560
           + YD+K       +  E  +       +G G  G V                VAVK L  
Sbjct: 26  YEYDLK--WEFPRENLEFGK------VLGSGAFGKVMNATAYGISKTGVSIQVAVKML-- 75

Query: 561 QRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVYEYMPNGNL 619
              K  A  +++  L     +E++ +  +  H+NIV L    +      L++EY   G+L
Sbjct: 76  ---KEKADSSEREAL----MSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDL 128

Query: 620 WDALHK----------------------GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPI 657
            + L                         L  L +      A+ VA+G+ +L        
Sbjct: 129 LNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSC 185

Query: 658 IHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKAT 717
           +HRD+ + N+L+      K+ DFG+A+ + +                ++APE  +    T
Sbjct: 186 VHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNA-RLPVKWMAPESLFEGIYT 244

Query: 718 TKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRD 777
            K DV+S+G++L E+ +           + N    +      + G         +     
Sbjct: 245 IKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLI------QNGFKMDQPFYATEEIYI 298

Query: 778 EMIQVLRIAIRCTSKSPATRPTMNEVVQLLA 808
                  I   C +     RP+   +   L 
Sbjct: 299 -------IMQSCWAFDSRKRPSFPNLTSFLG 322

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  179 bits (455), Expect = 1e-50
 Identities = 70/342 (20%), Positives = 129/342 (37%), Gaps = 41/342 (11%)

Query: 504 SSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQR 562
             ++P  V+  H    D  +I E      ++G G  G V++  +  +G   A K +    
Sbjct: 10  KQYYPQPVEIKHDHVLDHYDIHE------ELGTGAFGVVHRVTERATGNNFAAKFV---- 59

Query: 563 TKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDA 622
                  T      + ++ E++T+  +RH  +V L+  F      +++YE+M  G L++ 
Sbjct: 60  ------MTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEK 113

Query: 623 LHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV--NYQPKVADF 680
           +      +      +    V +GL ++H       +H D+K  NI+     + + K+ DF
Sbjct: 114 VADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDF 170

Query: 681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVE 740
           G+   L        +  V  GT  + APE A         D++S GV+   L++G  P  
Sbjct: 171 GLTAHLD----PKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG 226

Query: 741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
              G+N +         D        +D        ++    +R   +     P TR T+
Sbjct: 227 ---GENDDETLRNVKSCDWN------MDDSAFSGISEDGKDFIR---KLLLADPNTRMTI 274

Query: 801 NEVVQ---LLAEADPCRFESCKFPNKSNKESSNATKIKNPSE 839
           ++ ++   L     P R         +    S  TK     E
Sbjct: 275 HQALEHPWLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPE 316

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  179 bits (454), Expect = 2e-50
 Identities = 63/309 (20%), Positives = 117/309 (37%), Gaps = 38/309 (12%)

Query: 500 ETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKL 558
           E +   + P  V+      +D  +ILE      ++G G  G V++ ++  +G V   K +
Sbjct: 9   EDIWKKYVPQPVEVKQGSVYDYYDILE------ELGSGAFGVVHRCVEKATGRVFVAKFI 62

Query: 559 WSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGN 618
                     +T        +K E+  +  + H  ++ L+  F   Y  +L+ E++  G 
Sbjct: 63  ----------NTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGE 112

Query: 619 LWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP--K 676
           L+D +      +             +GL ++H      I+H DIK  NI+ +       K
Sbjct: 113 LFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVK 169

Query: 677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR 736
           + DFG+A  L      D    V   T  + APE           D+++ GV+   L++G 
Sbjct: 170 IIDFGLATKLN----PDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGL 225

Query: 737 KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPAT 796
            P   +  D+   +  V              D+    S   E    ++       K P  
Sbjct: 226 SPFAGE--DDLETLQNVKRCDWE-------FDEDAFSSVSPEAKDFIK---NLLQKEPRK 273

Query: 797 RPTMNEVVQ 805
           R T+++ ++
Sbjct: 274 RLTVHDALE 282

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  174 bits (442), Expect = 1e-49
 Identities = 68/295 (23%), Positives = 118/295 (40%), Gaps = 35/295 (11%)

Query: 519 FDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDK 577
           ++  E  E       +G+G S  V + I   + +  AVK +        +++  Q +L +
Sbjct: 2   YENYEPKE------ILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQ-ELRE 54

Query: 578 GLKTEVETLGNIR-HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRH 636
               EV+ L  +  H NI++L   + +     LV++ M  G L+D L +  V L      
Sbjct: 55  ATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK-VTLSEKETR 113

Query: 637 KIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTT 696
           KI   + + +  LH      I+HRD+K  NILLD +   K+ DFG +  L          
Sbjct: 114 KIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLD----PGEKL 166

Query: 697 TVIAGTYGYLAPEYAYSSKA------TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
             + GT  YLAPE    S          + D++S GV++  L+ G  P        + ++
Sbjct: 167 REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW---HRKQMLM 223

Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             + +  + +              + D +  ++    R     P  R T  E + 
Sbjct: 224 LRMIMSGNYQ------FGSPEWDDYSDTVKDLVS---RFLVVQPQKRYTAEEALA 269

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (441), Expect = 5e-49
 Identities = 62/287 (21%), Positives = 123/287 (42%), Gaps = 33/287 (11%)

Query: 522 REILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLK 580
           +E+ E       +G+G  G V++ ++ +S +    K +     KV  +D   +      K
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFV-----KVKGTDQVLV------K 49

Query: 581 TEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAF 640
            E+  L   RH+NI+ L+  F S+   ++++E++   ++++ ++     L+         
Sbjct: 50  KEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVH 109

Query: 641 GVAQGLAYLHHGLLSPIIHRDIKSTNILLDV--NYQPKVADFGIAKVLQARGGKDSTTTV 698
            V + L +LH      I H DI+  NI+     +   K+ +FG A+ L+          +
Sbjct: 110 QVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK----PGDNFRL 162

Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD 758
           +     Y APE       +T  D++S G ++  L++G  P   +   N+ II  +   ++
Sbjct: 163 LFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE--TNQQIIENI---MN 217

Query: 759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +    E   K++S    D  +       R   K   +R T +E +Q
Sbjct: 218 AEYTFDEEAFKEISIEAMD-FVD------RLLVKERKSRMTASEALQ 257

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (438), Expect = 8e-49
 Identities = 64/306 (20%), Positives = 121/306 (39%), Gaps = 43/306 (14%)

Query: 520 DQREI-LEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAVKKLWSQRTKVSASDTDQ 572
           D+ E+  E +T   ++GQG  G VY+      +       VA+K +       +AS  ++
Sbjct: 13  DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTV-----NEAASMRER 67

Query: 573 LQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALH-------- 624
           ++       E   +      ++V+L    S     L++ E M  G+L   L         
Sbjct: 68  IEF----LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMAN 123

Query: 625 -KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA 683
              L         ++A  +A G+AYL+    +  +HRD+ + N ++  ++  K+ DFG+ 
Sbjct: 124 NPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMT 180

Query: 684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDF 743
           + +            +     +++PE       TT  DV+SFGVVL E+ T  +      
Sbjct: 181 RDIYETDYYRKGGKGL-LPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL 239

Query: 744 GDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV 803
             N+ ++ +V       EG +            +       +   C   +P  RP+  E+
Sbjct: 240 -SNEQVLRFV------MEGGLLDKPDNCPDMLFE-------LMRMCWQYNPKMRPSFLEI 285

Query: 804 VQLLAE 809
           +  + E
Sbjct: 286 ISSIKE 291

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  171 bits (435), Expect = 1e-48
 Identities = 61/273 (22%), Positives = 101/273 (36%), Gaps = 29/273 (10%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             +G+G   TV    +L +    A+K L             +      +  E + +  + 
Sbjct: 14  KILGEGSFSTVVLARELATSREYAIKIL-------EKRHIIKENKVPYVTRERDVMSRLD 66

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H   VKLY  F           Y  NG L   + K     D          +   L YLH
Sbjct: 67  HPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI-GSFDETCTRFYTAEIVSALEYLH 125

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 IIHRD+K  NILL+ +   ++ DFG AK + +   K +      GT  Y++PE 
Sbjct: 126 G---KGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANSFVGTAQYVSPEL 181

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
                A    D+++ G ++ +L+ G  P       N+ +I+   IK++          +K
Sbjct: 182 LTEKSACKSSDLWALGCIIYQLVAGLPPFR---AGNEYLIFQKIIKLEYD------FPEK 232

Query: 771 LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV 803
                RD +++      +        R    E+
Sbjct: 233 FFPKARD-LVE------KLLVLDATKRLGCEEM 258

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (430), Expect = 7e-48
 Identities = 75/325 (23%), Positives = 121/325 (37%), Gaps = 59/325 (18%)

Query: 507 FPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK--------IDLNSGEVVAVKKL 558
            P D +    +  D+  + +       +G+G  G V             N    VAVK L
Sbjct: 2   LPEDPR--WELPRDRLVLGK------PLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKML 53

Query: 559 WSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYFSSLYCNLLVYEYMPNG 617
                K  A++ D   L     +E+E +  I +HKNI+ L    +      ++ EY   G
Sbjct: 54  -----KSDATEKDLSDL----ISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 104

Query: 618 NLWDALH---------------KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDI 662
           NL + L                     L        A+ VA+G+ YL        IHRD+
Sbjct: 105 NLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDL 161

Query: 663 KSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDV 722
            + N+L+  +   K+ADFG+A+ +         TT       ++APE  +    T + DV
Sbjct: 162 AARNVLVTEDNVMKIADFGLARDIH-HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDV 220

Query: 723 YSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQV 782
           +SFGV+L E+ T            + +   +      KEG         +          
Sbjct: 221 WSFGVLLWEIFTLGGSPYPGV-PVEELFKLL------KEGHRMDKPSNCTNELYM----- 268

Query: 783 LRIAIRCTSKSPATRPTMNEVVQLL 807
             +   C    P+ RPT  ++V+ L
Sbjct: 269 --MMRDCWHAVPSQRPTFKQLVEDL 291

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  167 bits (425), Expect = 2e-47
 Identities = 73/281 (25%), Positives = 112/281 (39%), Gaps = 29/281 (10%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
            +G GG   V+   DL     VAVK L   R  ++   +  L+     + E +    + H
Sbjct: 14  ILGFGGMSEVHLARDLRLHRDVAVKVL---RADLARDPSFYLRF----RREAQNAAALNH 66

Query: 592 KNIVKLYCYF----SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
             IV +Y        +     +V EY+    L D +H     +      ++     Q L 
Sbjct: 67  PAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALN 125

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLA 707
           + H    + IIHRD+K  NI++      KV DFGIA+ +   G   + T  + GT  YL+
Sbjct: 126 FSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLS 182

Query: 708 PEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           PE A       + DVYS G VL E++TG  P   D     ++ Y     V          
Sbjct: 183 PEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD--SPVSVAYQH---VREDPIPPSAR 237

Query: 768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-TMNEVVQLL 807
            + LS            + ++  +K+P  R  T  E+   L
Sbjct: 238 HEGLSADLDA-------VVLKALAKNPENRYQTAAEMRADL 271

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (421), Expect = 1e-46
 Identities = 68/325 (20%), Positives = 116/325 (35%), Gaps = 56/325 (17%)

Query: 508 PYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK------IDLNSGEVVAVKKLWSQ 561
           PYD   +     D+ ++ +       +G+G  G V +          +   VAVK L   
Sbjct: 2   PYDASKW-EFPRDRLKLGK------PLGRGAFGQVIEADAFGIDKTATCRTVAVKML--- 51

Query: 562 RTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLY--CYFSSLYCNLLVYEYMPNGNL 619
             K  A+ ++     + L +E++ L +I H   V              +++ E+   GNL
Sbjct: 52  --KEGATHSEH----RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNL 105

Query: 620 WDALHK---------------GLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKS 664
              L                     L        +F VA+G+ +L        IHRD+ +
Sbjct: 106 STYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAA 162

Query: 665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYS 724
            NILL      K+ DFG+A+ +                  ++APE  +    T + DV+S
Sbjct: 163 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA-RLPLKWMAPETIFDRVYTIQSDVWS 221

Query: 725 FGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLR 784
           FGV+L E+ +           ++     +      KEG         +            
Sbjct: 222 FGVLLWEIFSLGASPYPGVKIDEEFCRRL------KEGTRMRAPDYTTPEMYQ------- 268

Query: 785 IAIRCTSKSPATRPTMNEVVQLLAE 809
             + C    P+ RPT +E+V+ L  
Sbjct: 269 TMLDCWHGEPSQRPTFSELVEHLGN 293

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  163 bits (414), Expect = 2e-45
 Identities = 63/279 (22%), Positives = 113/279 (40%), Gaps = 33/279 (11%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI 589
           ++ +G G    V    D  + ++VA+K +        A +  +      ++ E+  L  I
Sbjct: 14  RDVLGTGAFSEVILAEDKRTQKLVAIKCI-----AKKALEGKE----GSMENEIAVLHKI 64

Query: 590 RHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
           +H NIV L   + S     L+ + +  G L+D + +           ++ F V   + YL
Sbjct: 65  KHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEK-GFYTERDASRLIFQVLDAVKYL 123

Query: 650 HHGLLSPIIHRDIKSTNILL---DVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           H      I+HRD+K  N+L    D + +  ++DFG++K+        S  +   GT GY+
Sbjct: 124 HD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKME----DPGSVLSTACGTPGYV 176

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEV 766
           APE       +   D +S GV+   L+ G  P    + +N   ++   +K + +      
Sbjct: 177 APEVLAQKPYSKAVDCWSIGVIAYILLCGYPPF---YDENDAKLFEQILKAEYE------ 227

Query: 767 LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            D        D     +R       K P  R T  + +Q
Sbjct: 228 FDSPYWDDISDSAKDFIR---HLMEKDPEKRFTCEQALQ 263

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  165 bits (418), Expect = 2e-45
 Identities = 56/271 (20%), Positives = 103/271 (38%), Gaps = 28/271 (10%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             +G+GG G VY     ++G++ A+K L     K          L    +  +  +    
Sbjct: 10  RIIGRGGFGEVYGCRKADTGKMYAMKCL----DKKRIKMKQGETLALNERIMLSLVSTGD 65

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
              IV +   F +      + + M  G+L   L +  V          A  +  GL ++H
Sbjct: 66  CPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVF-SEADMRFYAAEIILGLEHMH 124

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
           +     +++RD+K  NILLD +   +++D G+A                 GT+GY+APE 
Sbjct: 125 N---RFVVYRDLKPANILLDEHGHVRISDLGLACDFS-----KKKPHASVGTHGYMAPEV 176

Query: 711 AYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDK 769
                A  +  D +S G +L +L+ G  P       +K+ I  +++ +  +      L  
Sbjct: 177 LQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVE------LPD 230

Query: 770 KLSGSFRDEMIQVLRIAIRCTSKSPATRPTM 800
             S   R  +++          +    R   
Sbjct: 231 SFSPELRS-LLE------GLLQRDVNRRLGC 254

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (405), Expect = 1e-44
 Identities = 64/278 (23%), Positives = 109/278 (39%), Gaps = 39/278 (14%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR- 590
            +G GG G+VY  I ++    VA+K +     K   SD  +L     +  EV  L  +  
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHV----EKDRISDWGELPNGTRVPMEVVLLKKVSS 66

Query: 591 -HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYL 649
               +++L  +F      +L+ E                 L         + V + + + 
Sbjct: 67  GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHC 126

Query: 650 HHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           H+     ++HRDIK  NIL+D+N  + K+ DFG   +L     KD+  T   GT  Y  P
Sbjct: 127 HN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL-----KDTVYTDFDGTRVYSPP 178

Query: 709 EY-AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL 767
           E+  Y         V+S G++L +++ G  P    F  ++ II                 
Sbjct: 179 EWIRYHRYHGRSAAVWSLGILLYDMVCGDIP----FEHDEEIIRGQVF-----------F 223

Query: 768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            +++S   +        +   C +  P+ RPT  E+  
Sbjct: 224 RQRVSSECQH-------LIRWCLALRPSDRPTFEEIQN 254

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (406), Expect = 1e-44
 Identities = 67/298 (22%), Positives = 118/298 (39%), Gaps = 36/298 (12%)

Query: 514 FHRISFDQR-EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTD 571
           F + + D   +  E      ++G G    V K  + ++G   A K +     K     + 
Sbjct: 3   FRQENVDDYYDTGE------ELGSGQFAVVKKCREKSTGLQYAAKFI----KKRRTKSSR 52

Query: 572 QLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLD 631
           +    + ++ EV  L  I+H N++ L+  + +    +L+ E +  G L+D L +    L 
Sbjct: 53  RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLT 111

Query: 632 WPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD----VNYQPKVADFGIAKVLQ 687
                +    +  G+ YLH      I H D+K  NI+L        + K+ DFG+A  + 
Sbjct: 112 EEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID 168

Query: 688 ARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNK 747
                 +    I GT  ++APE         + D++S GV+   L++G  P     GD K
Sbjct: 169 ----FGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFL---GDTK 221

Query: 748 NIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
                    V+ +    +      S   +D  I+      R   K P  R T+ + +Q
Sbjct: 222 QETLANVSAVNYE--FEDEYFSNTSALAKD-FIR------RLLVKDPKKRMTIQDSLQ 270

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  159 bits (403), Expect = 3e-44
 Identities = 47/289 (16%), Positives = 98/289 (33%), Gaps = 35/289 (12%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           ++G+G  G +++  +L + + VA+K               +      L+ E  T   +  
Sbjct: 12  RIGEGSFGVIFEGTNLLNNQQVAIKFE------------PRRSDAPQLRDEYRTYKLLAG 59

Query: 592 -KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
              I  +Y +      N+LV + +           G       T    A  +   +  +H
Sbjct: 60  CTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIH 118

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQP-----KVADFGIAKVLQARGGKDST----TTVIAG 701
                 +++RDIK  N L+            V DFG+ K  +    K          ++G
Sbjct: 119 E---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSG 175

Query: 702 TYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE 761
           T  Y++       + + + D+ + G V M  + G  P +          Y    ++   E
Sbjct: 176 TARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYE---RI--GE 230

Query: 762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA 810
                  ++L   F +E  + +       + +    P  + +  L ++ 
Sbjct: 231 KKQSTPLRELCAGFPEEFYKYMH---YARNLAFDATPDYDYLQGLFSKV 276

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (403), Expect = 6e-44
 Identities = 63/274 (22%), Positives = 105/274 (38%), Gaps = 32/274 (11%)

Query: 531 KNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG-N 588
              +G+G  G V+      + +  A+K L     K      D ++       E   L   
Sbjct: 7   HKMLGKGSFGKVFLAEFKKTNQFFAIKAL----KKDVVLMDDDVEC---TMVEKRVLSLA 59

Query: 589 IRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAY 648
             H  +  ++C F +      V EY+  G+L   +       D       A  +  GL +
Sbjct: 60  WEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC-HKFDLSRATFYAAEIILGLQF 118

Query: 649 LHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAP 708
           LH      I++RD+K  NILLD +   K+ADFG+ K        D+ T    GT  Y+AP
Sbjct: 119 LHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLG---DAKTNTFCGTPDYIAP 172

Query: 709 EYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLD 768
           E     K     D +SFGV+L E++ G+ P      D + + + + +             
Sbjct: 173 EILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ--DEEELFHSIRMD-------NPFYP 223

Query: 769 KKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
           + L    +D       + ++   + P  R  +  
Sbjct: 224 RWLEKEAKD-------LLVKLFVREPEKRLGVRG 250

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  158 bits (400), Expect = 8e-44
 Identities = 55/284 (19%), Positives = 90/284 (31%), Gaps = 33/284 (11%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G G  G +Y   D+ +GE VA+K    +                 L  E +    ++ 
Sbjct: 14  KIGSGSFGDIYLGTDIAAGEEVAIKLECVK------------TKHPQLHIESKIYKMMQG 61

Query: 592 KNIVK-LYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
              +  +    +    N++V E +                   T   +A  +   + Y+H
Sbjct: 62  GVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIH 120

Query: 651 HGLLSPIIHRDIKSTNIL---LDVNYQPKVADFGIAKVLQARGGKDST----TTVIAGTY 703
                  IHRD+K  N L           + DFG+AK  +               + GT 
Sbjct: 121 S---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTA 177

Query: 704 GYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI 763
            Y +       + + + D+ S G VLM    G  P +      K   Y         E  
Sbjct: 178 RYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYER-----ISEKK 232

Query: 764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLL 807
           M    + L   +  E    L     C S     +P  + + QL 
Sbjct: 233 MSTPIEVLCKGYPSEFATYLN---FCRSLRFDDKPDYSYLRQLF 273

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (399), Expect = 3e-43
 Identities = 65/326 (19%), Positives = 129/326 (39%), Gaps = 38/326 (11%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
           + +G+G  G V    D  +   VA+KK+         S  +     +    E++ L   R
Sbjct: 14  SYIGEGAYGMVCSAYDNVNKVRVAIKKI---------SPFEHQTYCQRTLREIKILLRFR 64

Query: 591 HKNIVKLYCYFSSLYC----NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGL 646
           H+NI+ +     +       ++ +  ++   +L+  L     HL         + + +GL
Sbjct: 65  HENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ--HLSNDHICYFLYQILRGL 122

Query: 647 AYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
            Y+H    + ++HRD+K +N+LL+     K+ DFG+A+V           T    T  Y 
Sbjct: 123 KYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 179

Query: 707 APEYAYSSKATT-KCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIME 765
           APE   +SK  T   D++S G +L E+++ R         ++       +   ++E +  
Sbjct: 180 APEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNC 239

Query: 766 VLDKK---------------LSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ---LL 807
           +++ K                +  F +   + L +  +  + +P  R  + + +    L 
Sbjct: 240 IINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLE 299

Query: 808 AEADPCRFESCKFPNKSNKESSNATK 833
              DP      + P K + E  +  K
Sbjct: 300 QYYDPSDEPIAEAPFKFDMELDDLPK 325

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (394), Expect = 6e-43
 Identities = 73/317 (23%), Positives = 116/317 (36%), Gaps = 35/317 (11%)

Query: 523 EILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKT 581
           E L+       +G+G   TVYK  D N+ ++VA+KK+     K+      +  +++    
Sbjct: 1   EKLD------FLGEGQFATVYKARDKNTNQIVAIKKI-----KLGHRSEAKDGINRTALR 49

Query: 582 EVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFG 641
           E++ L  + H NI+ L   F       LV+++M            L  L           
Sbjct: 50  EIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSL-VLTPSHIKAYMLM 108

Query: 642 VAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAG 701
             QGL YLH      I+HRD+K  N+LLD N   K+ADFG+AK     G  +   T    
Sbjct: 109 TLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKSF---GSPNRAYTHQVV 162

Query: 702 TYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDD------------FGDNKN 748
           T  Y APE  + ++      D+++ G +L EL+     +  D             G    
Sbjct: 163 TRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTE 222

Query: 749 IIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ--- 805
             +     +             L   F      +L +       +P  R T  + ++   
Sbjct: 223 EQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKY 282

Query: 806 LLAEADPCRFESCKFPN 822
                 P        PN
Sbjct: 283 FSNRPGPTPGCQLPRPN 299

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (396), Expect = 9e-43
 Identities = 67/296 (22%), Positives = 112/296 (37%), Gaps = 45/296 (15%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKG 578
           D  ++         +G G +G V +  +  + E  A+K L               Q    
Sbjct: 11  DDYKVTS-----QVLGLGINGKVLQIFNKRTQEKFALKML---------------QDCPK 50

Query: 579 LKTEVETLGNI-RHKNIVKLYCYFSSLYCN----LLVYEYMPNGNLWDALHK-GLVHLDW 632
            + EVE      +  +IV++   + +LY      L+V E +  G L+  +   G      
Sbjct: 51  ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTE 110

Query: 633 PTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP---KVADFGIAKVLQAR 689
               +I   + + + YLH      I HRD+K  N+L          K+ DFG AK     
Sbjct: 111 REASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-- 165

Query: 690 GGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI 749
               ++ T    T  Y+APE     K    CD++S GV++  L+ G  P    F  N  +
Sbjct: 166 --SHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPP----FYSNHGL 219

Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
                +K   + G  E  + + S    +E+  ++R         P  R T+ E + 
Sbjct: 220 AISPGMKTRIRMGQYEFPNPEWS-EVSEEVKMLIR---NLLKTEPTQRMTITEFMN 271

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  155 bits (393), Expect = 1e-42
 Identities = 64/275 (23%), Positives = 107/275 (38%), Gaps = 46/275 (16%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
             +G G  G V+     ++G   A+K L             +L+  +    E   L  + 
Sbjct: 10  RTLGTGSFGRVHLIRSRHNGRYYAMKVL-------KKEIVVRLKQVEHTNDERLMLSIVT 62

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H  I++++  F       ++ +Y+  G L+  L K     +   +   A  V   L YLH
Sbjct: 63  HPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKF-YAAEVCLALEYLH 121

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 II+RD+K  NILLD N   K+ DFG AK +         T  + GT  Y+APE 
Sbjct: 122 S---KDIIYRDLKPENILLDKNGHIKITDFGFAKYV------PDVTYTLCGTPDYIAPEV 172

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
             +       D +SFG+++ E++ G  P  D                      M+  +K 
Sbjct: 173 VSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS-------------------NTMKTYEKI 213

Query: 771 LSGSFR------DEMIQVLRIAIRCTSKSPATRPT 799
           L+   R      +++  +L    R  ++  + R  
Sbjct: 214 LNAELRFPPFFNEDVKDLLS---RLITRDLSQRLG 245

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  153 bits (387), Expect = 3e-42
 Identities = 64/302 (21%), Positives = 112/302 (37%), Gaps = 39/302 (12%)

Query: 520 DQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGL 579
           ++   LE      K+G+G  G VYK   N GE  A+KK+  ++        +   +    
Sbjct: 2   EKYHGLE------KIGEGTYGVVYKAQNNYGETFALKKIRLEK--------EDEGIPSTT 47

Query: 580 KTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIA 639
             E+  L  ++H NIVKLY    +    +LV+E++        L      L+  T     
Sbjct: 48  IREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKL-LDVCEGGLESVTAKSFL 106

Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVI 699
             +  G+AY H      ++HRD+K  N+L++   + K+ADFG+A+           T  I
Sbjct: 107 LQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV--RKYTHEI 161

Query: 700 AGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDD-----------FGDNKN 748
              +         S K +T  D++S G +  E++ G                       N
Sbjct: 162 VTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPN 221

Query: 749 IIYWVSIKVDTKEGIMEVLDK-----KLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEV 803
              W ++    K      + +            +  I +L    +     P  R T  + 
Sbjct: 222 SKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLS---KMLKLDPNQRITAKQA 278

Query: 804 VQ 805
           ++
Sbjct: 279 LE 280

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-41
 Identities = 64/306 (20%), Positives = 116/306 (37%), Gaps = 37/306 (12%)

Query: 519 FDQR-EILEAMTEKNKVGQGGSGTVYK-IDL-NSGEVVAVKKLWSQRTKVSASDTDQLQL 575
            DQ+ E +       ++G+G  G V+K  DL N G  VA+K++     +V   +      
Sbjct: 5   ADQQYECVA------EIGEGAYGKVFKARDLKNGGRFVALKRV-----RVQTGEEGMPLS 53

Query: 576 DKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN-----LLVYEYMPNGNLWDALHKGLVHL 630
                  +  L    H N+V+L+   +    +      LV+E++               +
Sbjct: 54  TIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGV 113

Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
              T   + F + +GL +LH      ++HRD+K  NIL+  + Q K+ADFG+A++     
Sbjct: 114 PTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYS--- 167

Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV--EDDFGDNKN 748
                 T +  T  Y APE    S   T  D++S G +  E+   +       D      
Sbjct: 168 -FQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGK 226

Query: 749 IIY---------WVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT 799
           I+          W       ++       + +     D       + ++C + +PA R +
Sbjct: 227 ILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS 286

Query: 800 MNEVVQ 805
               + 
Sbjct: 287 AYSALS 292

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 1e-40
 Identities = 69/289 (23%), Positives = 111/289 (38%), Gaps = 29/289 (10%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+G+G  G VYK  +  +GEVVA+KK+          DT+   +      E+  L  + 
Sbjct: 8   EKIGEGTYGVVYKARNKLTGEVVALKKI--------RLDTETEGVPSTAIREISLLKELN 59

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           H NIVKL     +     LV+E++            L  +  P      F + QGLA+ H
Sbjct: 60  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 119

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPE- 709
                 ++HRD+K  N+L++     K+ADFG+A+     G    T T    T  Y APE 
Sbjct: 120 S---HRVLHRDLKPQNLLINTEGAIKLADFGLARAF---GVPVRTYTHEVVTLWYRAPEI 173

Query: 710 YAYSSKATTKCDVYSFGVVLMELITGRKPVEDD-------------FGDNKNIIYWVSIK 756
                  +T  D++S G +  E++T R     D                ++ +   V+  
Sbjct: 174 LLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSM 233

Query: 757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
            D K    +   +  S            +  +     P  R +    + 
Sbjct: 234 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 282

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 2e-40
 Identities = 63/288 (21%), Positives = 107/288 (37%), Gaps = 37/288 (12%)

Query: 516 RISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQ 574
           +++ +  + L+       +G+G  G V    +  +G   A+K L     K      D++ 
Sbjct: 1   KVTMNDFDYLK------LLGKGTFGKVILVREKATGRYYAMKIL----RKEVIIAKDEVA 50

Query: 575 LDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPT 634
                 TE   L N RH  +  L   F +      V EY   G L+  L +         
Sbjct: 51  H---TVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-RVFTEER 106

Query: 635 RHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDS 694
                  +   L YLH      +++RDIK  N++LD +   K+ DFG+ K   + G   +
Sbjct: 107 ARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG---A 160

Query: 695 TTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS 754
           T     GT  YLAPE    +      D +  GVV+ E++ GR P       +   ++ + 
Sbjct: 161 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY---NQDHERLFELI 217

Query: 755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
           +  + +        + LS   +  ++           K P  R     
Sbjct: 218 LMEEIR------FPRTLSPEAKS-LLA------GLLKKDPKQRLGGGP 252

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (373), Expect = 2e-40
 Identities = 60/296 (20%), Positives = 114/296 (38%), Gaps = 43/296 (14%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+G+G  GTV+K  +  + E+VA+K++          D D   +      E+  L  ++
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRV--------RLDDDDEGVPSSALREICLLKELK 59

Query: 591 HKNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLH 650
           HKNIV+L+    S     LV+E+                LD        F + +GL + H
Sbjct: 60  HKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCN-GDLDPEIVKSFLFQLLKGLGFCH 118

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
                 ++HRD+K  N+L++ N + K+A+FG+A+           +  +   +       
Sbjct: 119 S---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGI--PVRCYSAEVVTLWYRPPDVL 173

Query: 711 AYSSKATTKCDVYSFGVVLMELITGRKP---------------------VEDDFGDNKNI 749
             +   +T  D++S G +  EL    +P                      E+ +     +
Sbjct: 174 FGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKL 233

Query: 750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQ 805
             +    +      +  +  KL+ + RD ++Q           +P  R +  E +Q
Sbjct: 234 PDYKPYPMYPATTSLVNVVPKLNATGRD-LLQ------NLLKCNPVQRISAEEALQ 282

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 7e-39
 Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 49/303 (16%)

Query: 529 TEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG 587
           T+   +G G  G VY+    +SGE+VA+KK+   +              +    E++ + 
Sbjct: 23  TDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--------------RFKNRELQIMR 68

Query: 588 NIRHKNIVKLYCYFSS------LYCNLLVYEYMPNGNLWDALH--KGLVHLDWPTRHKIA 639
            + H NIV+L  +F S           LV +Y+P      A H  +    L         
Sbjct: 69  KLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM 128

Query: 640 FGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARGGKDSTTTV 698
           + + + LAY+H      I HRDIK  N+LLD +    K+ DFG AK L      +   + 
Sbjct: 129 YQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR---GEPNVSY 182

Query: 699 IAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN--KNII------ 750
           I   Y         ++  T+  DV+S G VL EL+ G+     D G +    II      
Sbjct: 183 ICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTP 242

Query: 751 ---YWVSIKVDTKEGIM-----EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
                  +  +  E            K        E I +     R    +P  R T  E
Sbjct: 243 TREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCS---RLLEYTPTARLTPLE 299

Query: 803 VVQ 805
              
Sbjct: 300 ACA 302

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 1e-36
 Identities = 73/317 (23%), Positives = 124/317 (39%), Gaps = 45/317 (14%)

Query: 514 FHR--ISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDT 570
           F+R  ++    E+     +   VG G  G V   +D  +G  VA+KKL            
Sbjct: 4   FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKL--------YRPF 55

Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS------LYCNLLVYEYMPNGNLWDALH 624
                 K    E+  L ++RH+N++ L   F+            LV  +M  G     L 
Sbjct: 56  QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM--GTDLGKLM 113

Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK 684
           K    L       + + + +GL Y+H    + IIHRD+K  N+ ++ + + K+ DFG+A+
Sbjct: 114 KH-EKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLAR 169

Query: 685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKP--VED 741
                   DS  T    T  Y APE   +  + T   D++S G ++ E+ITG+      D
Sbjct: 170 QA------DSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSD 223

Query: 742 DFGDNKNII---------YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI----R 788
                K I+         +   ++ D  +  M+ L +     F   +     +A+    +
Sbjct: 224 HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEK 283

Query: 789 CTSKSPATRPTMNEVVQ 805
                   R T  E + 
Sbjct: 284 MLVLDAEQRVTAGEALA 300

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  139 bits (350), Expect = 1e-36
 Identities = 67/321 (20%), Positives = 115/321 (35%), Gaps = 36/321 (11%)

Query: 487 RRFSKQRAITEPDETLSSSFFP-YDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK- 544
           ++ S+Q ++ E        F   ++  S +    DQ + ++       +G G  G V   
Sbjct: 7   KKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIK------TLGTGSFGRVMLV 60

Query: 545 IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL 604
               SG   A+K L             +L+  +    E   L  +    +VKL   F   
Sbjct: 61  KHKESGNHYAMKIL-------DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN 113

Query: 605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKS 664
               +V EY+  G ++  L +       P     A  +     YLH      +I+RD+K 
Sbjct: 114 SNLYMVMEYVAGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKP 169

Query: 665 TNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYS 724
            N+L+D     +V DFG AK           T  + GT   LAPE   S       D ++
Sbjct: 170 ENLLIDQQGYIQVTDFGFAKR------VKGRTWTLCGTPEALAPEIILSKGYNKAVDWWA 223

Query: 725 FGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLR 784
            GV++ E+  G  P   D      I   +                  S   +D +  +L+
Sbjct: 224 LGVLIYEMAAGYPPFFAD--QPIQIYEKIVSGKVR-------FPSHFSSDLKDLLRNLLQ 274

Query: 785 IAIRCTSKSPATRPTMNEVVQ 805
           + +  T +    +  +N++  
Sbjct: 275 VDL--TKRFGNLKNGVNDIKN 293

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 3e-36
 Identities = 60/301 (19%), Positives = 115/301 (38%), Gaps = 39/301 (12%)

Query: 532 NKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR 590
            K+GQG  G V+K     +G+ VA+KK+  +  K     T           E++ L  ++
Sbjct: 16  AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPIT--------ALREIKILQLLK 67

Query: 591 HKNIVKLYC--------YFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGV 642
           H+N+V L          Y        LV+++  +       +  LV        ++   +
Sbjct: 68  HENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNV-LVKFTLSEIKRVMQML 126

Query: 643 AQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQ-ARGGKDSTTTVIAG 701
             GL Y+H    + I+HRD+K+ N+L+  +   K+ADFG+A+    A+  + +  T    
Sbjct: 127 LNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVV 183

Query: 702 TYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK 760
           T  Y  PE     +      D++  G ++ E+ T    ++ +   ++  +        T 
Sbjct: 184 TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITP 243

Query: 761 EGIMEVLDKKLSGSFRDEMIQVLRIAI----------------RCTSKSPATRPTMNEVV 804
           E    V + +L         Q  ++                  +     PA R   ++ +
Sbjct: 244 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDAL 303

Query: 805 Q 805
            
Sbjct: 304 N 304

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 6e-36
 Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 33/292 (11%)

Query: 516 RISFDQREILEAMTEKNKVGQGGSGTVYK----IDLNSGEVVAVKKLWSQRTKVSASDTD 571
           ++  +  E+L+       +G G  G V+        ++G++ A+K L        A  T+
Sbjct: 20  KVGIENFELLK------VLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTE 73

Query: 572 QLQLDKGLKTEVETLGNIRHK-NIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHL 630
                   +TE + L +IR    +V L+  F +     L+ +Y+  G L+  L +     
Sbjct: 74  HT------RTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR---- 123

Query: 631 DWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARG 690
           +  T H++   V + +  L H     II+RDIK  NILLD N    + DFG++K   A  
Sbjct: 124 ERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE 183

Query: 691 GKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNII 750
            + +        Y          S      D +S GV++ EL+TG  P   D    KN  
Sbjct: 184 TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVD--GEKNSQ 241

Query: 751 YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNE 802
             +S ++   E       +++S   +D +IQ      R   K P  R     
Sbjct: 242 AEISRRILKSE---PPYPQEMSALAKD-LIQ------RLLMKDPKKRLGCGP 283

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  131 bits (330), Expect = 4e-34
 Identities = 57/344 (16%), Positives = 122/344 (35%), Gaps = 58/344 (16%)

Query: 490 SKQRAITEPDETLSSSFFPYDVKSFHRISFDQREILEAMTEKNKVGQGGSGTVYK-IDLN 548
           S+ R  T+ +      ++ Y+       + D  +++       K+G+G    V++ I++ 
Sbjct: 5   SRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVR------KLGRGKYSEVFEAINIT 58

Query: 549 SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSSLYCN 607
           + E V VK L   +              K +K E++ L N+R   NI+ L          
Sbjct: 59  NNEKVVVKILKPVK-------------KKKIKREIKILENLRGGPNIITLADIVKDPVSR 105

Query: 608 L--LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKST 665
              LV+E++ N +           L         + + + L Y H      I+HRD+K  
Sbjct: 106 TPALVFEHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPH 158

Query: 666 NILLDV-NYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVY 723
           N+++D  + + ++ D+G+A+             V   +  +  PE     +      D++
Sbjct: 159 NVMIDHEHRKLRLIDWGLAEFYH----PGQEYNVRVASRYFKGPELLVDYQMYDYSLDMW 214

Query: 724 SFGVVLMELITGRKP-------------VEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKK 770
           S G +L  +I  ++P             +    G      Y     ++      ++L + 
Sbjct: 215 SLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRH 274

Query: 771 LSGSFRDEMIQVLRIAI---------RCTSKSPATRPTMNEVVQ 805
               +   +    +  +         +       +R T  E ++
Sbjct: 275 SRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 318

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 2e-33
 Identities = 63/316 (19%), Positives = 126/316 (39%), Gaps = 41/316 (12%)

Query: 513 SFHR--ISFDQREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASD 569
           +F+R  ++    E+ E     + VG G  G+V    D  +G  VAVKKL        +  
Sbjct: 3   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKL--------SRP 54

Query: 570 TDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS-----LYCNLLVYEYMPNGNLWDALH 624
              +   K    E+  L +++H+N++ L   F+       + ++ +  ++   +L + + 
Sbjct: 55  FQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK 114

Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK 684
                L       + + + +GL Y+H    + IIHRD+K +N+ ++ + + K+ DFG+A+
Sbjct: 115 CQ--KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 169

Query: 685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV--EDD 742
                   D  T  +A  +                 D++S G ++ EL+TGR      D 
Sbjct: 170 HTD-----DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH 224

Query: 743 FGDNKNII---------YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI----RC 789
               K I+             I  ++    ++ L +    +F +  I    +A+    + 
Sbjct: 225 IDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKM 284

Query: 790 TSKSPATRPTMNEVVQ 805
                  R T  + + 
Sbjct: 285 LVLDSDKRITAAQALA 300

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 3e-31
 Identities = 64/327 (19%), Positives = 109/327 (33%), Gaps = 54/327 (16%)

Query: 514 FHRISFD--QREILEAMTEKNKVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDT 570
           F+ +        +L+       +G G  G V    D      VA+KKL          + 
Sbjct: 3   FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKL-----SRPFQNQ 57

Query: 571 DQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCN------LLVYEYMPNGNLWDALH 624
              +       E+  +  + HKNI+ L   F+            LV E M          
Sbjct: 58  THAKR---AYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQM 114

Query: 625 KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK 684
                LD      + + +  G+ +LH    + IIHRD+K +NI++  +   K+ DFG+A+
Sbjct: 115 ----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 167

Query: 685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPV--EDD 742
                 G     T    T  Y APE           D++S G ++ E++  +      D 
Sbjct: 168 T----AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 223

Query: 743 FGDNKNII--------YWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAI------- 787
                 +I         ++     T    +E   K    +F       L  A        
Sbjct: 224 IDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLK 283

Query: 788 ---------RCTSKSPATRPTMNEVVQ 805
                    +     PA R ++++ +Q
Sbjct: 284 ASQARDLLSKMLVIDPAKRISVDDALQ 310

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  121 bits (304), Expect = 2e-30
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 9/220 (4%)

Query: 533 KVGQGGSGTVYK-IDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
           K+G G   TV+   D+ +   VA+K +   +    A++ +   L +    +     ++  
Sbjct: 20  KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGA 79

Query: 592 KNIVKLYCYFSSLYCNL----LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLA 647
            +I+KL  +F+    N     +V+E +    L          +      +I+  +  GL 
Sbjct: 80  NHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLD 139

Query: 648 YLHHGLLSPIIHRDIKSTNILLDVN-YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYL 706
           Y+H      IIH DIK  N+L+++      +    IA +  A    +  T  I  T  Y 
Sbjct: 140 YMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSI-QTREYR 196

Query: 707 APEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDN 746
           +PE    +      D++S   ++ ELITG    E D G +
Sbjct: 197 SPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHS 236

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (251), Expect = 6e-24
 Identities = 54/290 (18%), Positives = 101/290 (34%), Gaps = 16/290 (5%)

Query: 107 HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPK 166
            +P ++    +   L+L  N+ +      +  NL  L  L +  N +S   P +   L K
Sbjct: 24  KVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 167 LRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
           L  L L  N L      +      L +       +   V   L Q   +  L  +  K S
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSS 139

Query: 227 GPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPH 286
           G          KL Y  +     +  +P  L    +L    +  N +       +  L +
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 287 VSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLS 346
           ++ + LS+NS S     ++ N  +L EL +  N++   +P  +     +  + L +N +S
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255

Query: 347 G------PIPSGIGNLKKLNLLMLQSNKLNSS--IPNSLSSLKSLNVLDL 388
                    P         + + L SN +      P++   +     + L
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.4 bits (202), Expect = 1e-17
 Identities = 50/285 (17%), Positives = 88/285 (30%), Gaps = 39/285 (13%)

Query: 17  QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
            +   LDL NN  T                            + +     L  L  ++L 
Sbjct: 31  PDTALLDLQNNKITE---------------------------IKDGDFKNLKNLHTLILI 63

Query: 77  TCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEE 136
              +    P +   +  L  L L+ N +          L+ LR  E    +         
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 123

Query: 137 LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSL 196
             N   + +L  +    SG    +   + KL  +++ + +++   +       +LT L L
Sbjct: 124 --NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHL 178

Query: 197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS 256
             N +T      L   + L  L LS N +S      + +   L+    L N     +P  
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL-HLNNNKLVKVPGG 237

Query: 257 LARCKNLLRFRVSNNHLEG------SIPEGILSLPHVSIIDLSYN 295
           LA  K +    + NN++          P         S + L  N
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.4 bits (202), Expect = 1e-17
 Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 18/283 (6%)

Query: 68  TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
               ++ L    +         N+ +L  L L  N I+   P     L  L +L L  NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 128 QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN--NSLSGEISSVI 185
                +PE++       +L +  N ++         L ++ V++L       SG  +   
Sbjct: 91  L--KELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 186 ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL 245
                L+ + + D ++T  +PQ L     L  L L  NK++    A +     L    + 
Sbjct: 147 QGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 246 QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT- 304
            N  S V   SLA   +L    ++NN L   +P G+    ++ ++ L  N+ S   +N  
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 305 -----VGNARNLSELFMQRNQISGF-IPSEIYRAI-SLVKIDL 340
                     + S + +  N +  + I    +R +     + L
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 22/116 (18%), Positives = 45/116 (38%)

Query: 309 RNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK 368
            + + L +Q N+I+     +     +L  + L +N +S   P     L KL  L L  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 369 LNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSL 424
           L         +L+ L V +     +   +   L +++   +  +  + SG    + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 7e-06
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 14/179 (7%)

Query: 1   MSFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
                       F  M+ L  + +++   T    +      +L  L  + N   K+ K+ 
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGN---KITKVD 187

Query: 61  ESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQ 120
            +S+  L  L  + L+  ++      S+ N   L +L L  N +   +P  +   K ++ 
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 246

Query: 121 LELYYNQ-----QLAGTIPEELGNLTELTDLDMSVNHLS-GKIPESILR-LPKLRVLQL 172
           + L+ N            P         + + +  N +   +I  S  R +     +QL
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 99.7 bits (247), Expect = 5e-23
 Identities = 75/344 (21%), Positives = 126/344 (36%), Gaps = 27/344 (7%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
           ++     + NL +++ SNN  T   PL   NLT L  +  N N    +  L   +     
Sbjct: 58  SIDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGL 115

Query: 69  KLRIMVLATCALHGQIPA---------SIGNVTSLTDLELTGNFITGHIPPEIGLLKNLR 119
            L    +        +           +I ++++L+ L        G+   ++  L NL 
Sbjct: 116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT 175

Query: 120 QLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG 179
            LE         +    L  LT L  L  + N +S   P  I  L  L  L L  N L  
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 233

Query: 180 EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKL 239
                +A+ T LT L L +N ++   P  L   + L  L L  N++S   P    +    
Sbjct: 234 --IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 289

Query: 240 QYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG 299
                 Q          ++  KNL    +  N++    P  + SL  +  +  + N  S 
Sbjct: 290 LELNENQLED----ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 300 PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDN 343
              +++ N  N++ L    NQIS   P  +     + ++ L+D 
Sbjct: 344 V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 89.3 bits (220), Expect = 1e-19
 Identities = 73/387 (18%), Positives = 131/387 (33%), Gaps = 53/387 (13%)

Query: 14  SPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNEN-----PGF----KLWKLPESSI 64
           + +  +  L            +    L NL  ++F+ N            KL  +  ++ 
Sbjct: 41  TDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 98

Query: 65  FRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELY 124
                  +  L            I ++  L +L                   +       
Sbjct: 99  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 158

Query: 125 YNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSV 184
            +     T  + L NLT L  LD+S N +S     +  +L  L  L   NN +S      
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLG 216

Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           I  +  L  LSL  N L       L   + L  LDL+ N++S   P              
Sbjct: 217 ILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP-------------- 258

Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
                       L+    L   ++  N +    P  +  L  ++ ++L+ N       + 
Sbjct: 259 ------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISP 302

Query: 305 VGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLML 364
           + N +NL+ L +  N IS   P  +     L ++  ++N +S    S + NL  +N L  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 365 QSNKLNSSIPNSLSSLKSLNVLDLSNN 391
             N+++   P  L++L  +  L L++ 
Sbjct: 359 GHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.7 bits (208), Expect = 5e-18
 Identities = 63/340 (18%), Positives = 124/340 (36%), Gaps = 29/340 (8%)

Query: 87  SIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDL 146
            +  + +LT +  + N +T   P  +  L  L  + +  NQ    T    L NLT LT  
Sbjct: 61  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

Query: 147 DMSVNHLSGKIPESILRLPKLRVLQLY------------NNSLSGEISSVIANSTTLTML 194
           +  +  +      + L   +L    +               S   +++ +   +   T+ 
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP 254
            L  +S        L + + L  L  + N++S   P  + +   L    +  N       
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--I 234

Query: 255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSEL 314
            +LA   NL    ++NN +    P     L  ++ + L  N  S             +  
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLA----GLTALT 288

Query: 315 FMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP 374
            ++ N+      S I    +L  + L  N +S   P  + +L KL  L   +NK+  S  
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDV 344

Query: 375 NSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNN 414
           +SL++L ++N L   +N ++   P +    +   +  ++ 
Sbjct: 345 SSLANLTNINWLSAGHNQISDLTPLANLTRI-TQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.1 bits (204), Expect = 2e-17
 Identities = 77/352 (21%), Positives = 137/352 (38%), Gaps = 35/352 (9%)

Query: 87  SIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDL 146
           S  ++  +T L+     I       +  L NL Q+    NQ L    P  L NLT+L D+
Sbjct: 39  SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDI 93

Query: 147 DMSVNHLSGKIPESILRLPKLR------VLQLYNNSLSGEISSVIANSTTLTMLSLYDNS 200
            M+ N ++   P + L            +  +        ++ +  +S T++ +S     
Sbjct: 94  LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL 153

Query: 201 LTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV-------LQNMFSGVL 253
            + +      Q + L  L          + +   S   +   L          N  S + 
Sbjct: 154 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 213

Query: 254 PDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSE 313
           P  +    NL    ++ N L+      + SL +++ +DL+ N  S      +     L+E
Sbjct: 214 PLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 267

Query: 314 LFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSI 373
           L +  NQIS   P     A++ ++++ +         S I NLK L  L L  N ++   
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQL----EDISPISNLKNLTYLTLYFNNISDIS 323

Query: 374 PNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--SINFSNNRLSGPIPLS 423
           P  +SSL  L  L  +NN ++     SL  L  N   ++  +N++S   PL+
Sbjct: 324 P--VSSLTKLQRLFFANNKVSD--VSSLANL-TNINWLSAGHNQISDLTPLA 370

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 9e-12
 Identities = 59/342 (17%), Positives = 113/342 (33%), Gaps = 47/342 (13%)

Query: 115 LKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN 174
           L    +  L            +L  +T L    + +  + G     +  L  L  +   N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSN 75

Query: 175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVC 234
           N L+      + N T L  + + +N +    P         + L  ++     PL     
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 235 SRGKLQYFLVLQNMFSGVLPDSLARC-------------KNLLRFRVSNNHLEGSIPEGI 281
                     + ++ +     SL +                    R+  +  + S    +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 282 LSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLS 341
             L ++  +  + N  S           NL EL +  NQ+       +    +L  +DL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 342 DNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSS--------------------LK 381
           +N +S   P  +  L KL  L L +N++++  P +  +                    LK
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 382 SLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLS 423
           +L  L L  N ++   P S    L   + F+NN++S    L+
Sbjct: 308 NLTYLTLYFNNISDISPVSSLTKL-QRLFFANNKVSDVSSLA 348

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 2e-08
 Identities = 56/329 (17%), Positives = 104/329 (31%), Gaps = 66/329 (20%)

Query: 164 LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN 223
           L +     L   +++  +S    +   +T L      +       +   + L  ++ S N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76

Query: 224 KLSGPLPAKVCSR------------------GKLQYFLVLQNMFSGVLPDSLARCKNLLR 265
           +L+   P K  ++                         +          D L    NL R
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 266 FRVSNNHLEG-----------SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSEL 314
             +S+N +              +  G        + +L+        +N V +   L++L
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 315 FMQ------RNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK 368
                     NQIS   P  I    +L ++ L+ N L       + +L  L  L L +N+
Sbjct: 197 TNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252

Query: 369 LNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--------------------- 407
           +++  P  LS L  L  L L  N ++   P +    L N                     
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 408 SINFSNNRLSGPIPLSLIKEGLVESFSGN 436
            +    N +S   P+S + +     F+ N
Sbjct: 311 YLTLYFNNISDISPVSSLTKLQRLFFANN 339

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 91.0 bits (225), Expect = 1e-21
 Identities = 27/201 (13%), Positives = 59/201 (29%), Gaps = 16/201 (7%)

Query: 532 NKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH 591
             +G+G    V+           VK      T        +   D               
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 592 KNIVKLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHK-IAFGVAQGLAYLH 650
           + + KL            VY +  N  L + +    ++         +   + + +A  +
Sbjct: 66  RALQKLQG-----LAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY 120

Query: 651 HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEY 710
           H     I+H D+   N+L+       + DF  +  +   G ++     +     Y +  Y
Sbjct: 121 H---RGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEVGEEGWREILERDVRNIITYFSRTY 176

Query: 711 AYSSKATTKCDVYSFGVVLME 731
                   + D+ S    +++
Sbjct: 177 RT------EKDINSAIDRILQ 191

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 91.4 bits (225), Expect = 1e-20
 Identities = 72/268 (26%), Positives = 113/268 (42%), Gaps = 5/268 (1%)

Query: 138 GNLTELTDLDMSVNHLSGK--IPESILRLPKLRVLQLYNN-SLSGEISSVIANSTTLTML 194
                + +LD+S  +L     IP S+  LP L  L +    +L G I   IA  T L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 195 SLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP 254
            +   +++G +P  L Q   LV LD S N LSG LP  + S   L       N  SG +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSEL 314
           DS      L      + +          +  +++ +DLS N   G  +   G+ +N ++ 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQK 225

Query: 315 FMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP 374
                    F   ++  + +L  +DL +N + G +P G+  LK L+ L +  N L   IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 375 NSLSSLKSLNVLDLSNNLLTGYIPESLC 402
               +L+  +V   +NN      P   C
Sbjct: 286 -QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 83.3 bits (204), Expect = 8e-18
 Identities = 70/289 (24%), Positives = 117/289 (40%), Gaps = 26/289 (8%)

Query: 87  SIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDL 146
           +      + +L+L+G  +    P                       IP  L NL  L  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNFL 81

Query: 147 DMSVNH-LSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEV 205
            +   + L G IP +I +L +L  L + + ++SG I   ++   TL  L    N+L+G +
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 206 PQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLR 265
           P  +     LV +    N++SG +P    S  KL   + +                NL  
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201

Query: 266 FRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFI 325
             +S N LEG       S  +   I     +        VG ++NL+ L ++ N+I G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIH-LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260

Query: 326 PSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP 374
           P  + +   L  +++S N L G IP G GNL++ ++    +NK     P
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.6 bits (192), Expect = 2e-16
 Identities = 61/282 (21%), Positives = 107/282 (37%), Gaps = 28/282 (9%)

Query: 163 RLPKLRVLQLYNNSLSG--EISSVIANSTTLTMLSLYDN-SLTGEVPQDLGQWSPLVVLD 219
           +  ++  L L   +L     I S +AN   L  L +    +L G +P  + + + L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 220 LSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPE 279
           ++   +SG +P  +     L       N  SG LP S++   NL+      N + G+IP+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 280 GILSLPH-VSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKI 338
              S     + + +S N  +G I  T  N         +                +    
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 339 DLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIP 398
              ++         +G  K LN L L++N++  ++P  L+ LK L+ L++S N L G IP
Sbjct: 228 LAKNS--LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 399 ESLCELLPNSINFSNNRLSGPIPLSLIKEGLVESFSGNPGLC 440
           +          N     +S              +++ N  LC
Sbjct: 286 QGG--------NLQRFDVS--------------AYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 63/282 (22%), Positives = 101/282 (35%), Gaps = 31/282 (10%)

Query: 18  NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLAT 77
            +  LDLS       +P+                          SS+  L  L  + +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIP-------------------------SSLANLPYLNFLYIGG 85

Query: 78  CA-LHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEE 136
              L G IP +I  +T L  L +T   ++G IP  +  +K L  L+  YN   +GT+P  
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPS 144

Query: 137 LGNLTELTDLDMSVNHLSGKIPESILRLPKLRV-LQLYNNSLSGEISSVIANSTTLTMLS 195
           + +L  L  +    N +SG IP+S     KL   + +  N L+G+I    AN     +  
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204

Query: 196 LYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD 255
             +              +   +     +         +     L    +  N   G LP 
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQ 262

Query: 256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSF 297
            L + K L    VS N+L G IP+G  +L    +   + N  
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 5e-09
 Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 6/167 (3%)

Query: 11  PDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKL 70
           P  S + NL  +    N  +G  P S  + + L                P  +       
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---- 198

Query: 71  RIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLA 130
              V  +  +     + +      T               ++GL KNL  L+L  N+ + 
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR-IY 257

Query: 131 GTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL 177
           GT+P+ L  L  L  L++S N+L G+IP+    L +  V    NN  
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEG--SIPEGILSLPHVSIIDLSYN-SFSGPIANTV 305
           + GVL D+  +   +    +S  +L     IP  + +LP+++ + +    +  GPI   +
Sbjct: 38  WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97

Query: 306 GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQ 365
                L  L++    +SG IP  + +  +LV +D S N LSG +P  I +L  L  +   
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 366 SNKLNSSIPNSLSSLKSLN 384
            N+++ +IP+S  S   L 
Sbjct: 158 GNRISGAIPDSYGSFSKLF 176

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (215), Expect = 1e-19
 Identities = 49/265 (18%), Positives = 86/265 (32%), Gaps = 7/265 (2%)

Query: 132 TIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTL 191
            +P  +        + +  N +S     S      L +L L++N L+   ++       L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 192 TMLSLYDNSLTGEV-PQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFS 250
             L L DN+    V P        L  L L    L    P        LQY  +  N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARN 310
            +  D+     NL    +  N +          L  +  + L  N  +    +   +   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 311 LSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLN 370
           L  L++  N +S      +    +L  + L+DN       +       L      S+++ 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVP 261

Query: 371 SSIPNSLSSLKSLNVLDLSNNLLTG 395
            S+P     L   ++  L+ N L G
Sbjct: 262 CSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 3e-18
 Identities = 50/265 (18%), Positives = 80/265 (30%), Gaps = 6/265 (2%)

Query: 83  QIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTE 142
            +P  I    +   + L GN I+          +NL  L L+ N           G    
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 143 LTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT 202
                     L    P +   L +L  L L    L      +      L  L L DN+L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 203 GEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKN 262
                       L  L L  N++S            L   L+ QN  + V P +      
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 263 LLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQIS 322
           L+   +  N+L     E +  L  +  + L+ N +             L +     +++ 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVP 261

Query: 323 GFIPSEIYRAISLVKIDLSDNLLSG 347
             +P  +     L    L+ N L G
Sbjct: 262 CSLPQRL-AGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 5e-18
 Identities = 52/291 (17%), Positives = 90/291 (30%), Gaps = 32/291 (10%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
            +P   P    +R+ L  N  +     S     NL +     +          +      
Sbjct: 25  AVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTI--LWLHSNVLARIDAAAFTGLAL 81

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQ 128
             ++ +     L    PA+   +  L  L L    +    P     L  L+ L L  N  
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-A 140

Query: 129 LAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANS 188
           L     +   +L  LT L +  N +S     +   L  L  L L+ N ++        + 
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 189 TTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNM 248
             L  L L+ N+L+    + L     L  L L++N                +        
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--------ARPLW----- 247

Query: 249 FSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG 299
                         L +FR S++ +  S+P+    L    +  L+ N   G
Sbjct: 248 ------------AWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 8e-10
 Identities = 51/258 (19%), Positives = 80/258 (31%), Gaps = 31/258 (12%)

Query: 187 NSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQ 246
            +      S     L   VP  +        + L  N++S                    
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISH------------------- 46

Query: 247 NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI-ANTV 305
                V   S   C+NL    + +N L          L  +  +DLS N+    +   T 
Sbjct: 47  -----VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101

Query: 306 GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQ 365
                L  L + R  +    P       +L  + L DN L         +L  L  L L 
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161

Query: 366 SNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSI--NFSNNRLSGPIPLS 423
            N+++S    +   L SL+ L L  N +    P +  +L        F+NN  + P    
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 424 LIKEGLVE-SFSGNPGLC 440
                L     + NP +C
Sbjct: 222 APLRALQYLRLNDNPWVC 239

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 9e-10
 Identities = 34/186 (18%), Positives = 49/186 (26%), Gaps = 19/186 (10%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
            LP   P ++   L LS NL       ++   T L  L+ +     KL       +    
Sbjct: 24  ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 69  KLRIMVLATCALHGQ-----------------IPASIGNVTSLTDLELTGNFITGHIPPE 111
            L    L +  L GQ                 +P                      +PP 
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 112 IGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ 171
           +       +     N  L       L  L  L  L +  N L   IP+       L    
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 172 LYNNSL 177
           L+ N  
Sbjct: 202 LHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 32/233 (13%)

Query: 185 IANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV 244
           ++   +   ++    +LT  +P DL +     +L LSEN L                   
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYT----------------- 45

Query: 245 LQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
                      +L     L +  +    L     +G L +     +  +       +  T
Sbjct: 46  -------FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT 98

Query: 305 VGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLML 364
           +     L    +  N+++      +     L ++ L  N L    P  +    KL  L L
Sbjct: 99  LPALTVL---DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 365 QSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLP-NSINFSNNRL 416
            +N L       L+ L++L+ L L  N L   IP+               N  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 40/187 (21%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 83  QIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTE 142
            +P  +      T L L+ N +       +     L QL L   +     +   L  L  
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 143 LT--------------------DLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEIS 182
           L                      LD+S N L+     ++  L +L+ L L  N L     
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 183 SVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYF 242
            ++  +  L  LSL +N+LT      L     L  L L EN L   +P        L + 
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

Query: 243 LVLQNMF 249
            +  N +
Sbjct: 201 FLHGNPW 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 34/277 (12%), Positives = 87/277 (31%), Gaps = 16/277 (5%)

Query: 144 TDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTG 203
             LD++  +L   +   +L    +   +   + +   ++   +    +  + L ++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60

Query: 204 E-VPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP-------- 254
             +   L Q S L  L L   +LS P+   +     L    +                  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSEL 314
             L        F  +  H++ ++     ++  +++     N     ++  V    NL  L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 315 FMQRN-QISGFIPSEIYRAISLVKIDLSD-NLLSGPIPSGIGNLKKLNLLMLQSNKLNSS 372
            +  +  +      E ++   L  + LS    +       +G +  L  L +     + +
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 373 IPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSI 409
           +     +L  L +   + +  T     ++       I
Sbjct: 241 LQLLKEALPHLQI---NCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 40/302 (13%)

Query: 20  RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCA 79
           + LDL+        P     L +  V++F     F    L E   F   +++ M L+   
Sbjct: 3   QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH--FSPFRVQHMDLSNSV 57

Query: 80  LHG-QIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEE-- 136
           +    +   +   + L +L L G  ++  I   +    NL +L L      +    +   
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 137 --LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTML 194
                L EL                       +  L L     + + S +         L
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 195 SLYDNS----LTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFS 250
              D S    L  +  Q+  Q + L  L LS                             
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC-----------------------YDII 214

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARN 310
                 L     L   +V     +G++     +LPH   + ++ + F+     T+GN +N
Sbjct: 215 PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKN 271

Query: 311 LS 312
             
Sbjct: 272 QE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 37/268 (13%), Positives = 80/268 (29%), Gaps = 39/268 (14%)

Query: 192 TMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSG 251
             L L   +L  +V   L     ++      + +  PL  +  S  ++Q+  +  ++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEV 60

Query: 252 V-LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARN 310
             L   L++C  L    +    L   I   +    ++  ++LS  S     A     +  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 311 LSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSG----------------------- 347
                +  +    F    +  A++ V   ++   LSG                       
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 348 ----------PIPSGIGNLKKLNLLMLQS-NKLNSSIPNSLSSLKSLNVLDLSNNLLTGY 396
                             L  L  L L     +       L  + +L  L +   +  G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 397 IPESLCELLPNSINFSNNRLSGPIPLSL 424
           + + L E LP+ +  + +  +     ++
Sbjct: 241 L-QLLKEALPH-LQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 31/205 (15%), Positives = 61/205 (29%), Gaps = 9/205 (4%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENP-----GFKLWKLPESSIFRL 67
            S    L+ L L     +     ++   +NL  L+ +          +      S +  L
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126

Query: 68  TKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ 127
                       +   +      +T L       N     +   +    NL  L+L  + 
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186

Query: 128 QLAGTIPEELGNLTELTDLDMS-VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIA 186
            L     +E   L  L  L +S    +  +    +  +P L+ LQ++     G +  +  
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE 246

Query: 187 NSTTLTMLSLYDNSLTGEVPQDLGQ 211
               L  L +  +  T      +G 
Sbjct: 247 A---LPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 39/267 (14%), Positives = 81/267 (30%), Gaps = 38/267 (14%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF 65
           +   L +      ++ +DLSN++        + +                          
Sbjct: 35  MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS-------------------------- 68

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELT--GNFITGHIPPEIGLLKNLRQLEL 123
           + +KL+ + L    L   I  ++   ++L  L L+    F    +   +     L +L L
Sbjct: 69  QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128

Query: 124 YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQL------YNNSL 177
            +         +        T   ++++     + +S L     R   L       +  L
Sbjct: 129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188

Query: 178 SGEISSVIANSTTLTMLSLYD-NSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSR 236
             +          L  LSL     +  E   +LG+   L  L +      G L     + 
Sbjct: 189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL 248

Query: 237 GKLQYFLVLQNMFSGVLPDSLARCKNL 263
             LQ   +  + F+ +   ++   KN 
Sbjct: 249 PHLQ---INCSHFTTIARPTIGNKKNQ 272

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 29/227 (12%), Positives = 79/227 (34%), Gaps = 18/227 (7%)

Query: 164 LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSEN 223
           L     +    ++++  ++   A+   +T LS +   +T    + +   + L+ L+L +N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 224 KLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILS 283
           +++   P K  ++                +    +     L      +    +    +  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 284 LPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDN 343
           L        + +  +G               ++          + +     L  +   DN
Sbjct: 134 LYLDLNQITNISPLAGLTNLQ----------YLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 344 LLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSN 390
            +S   P  + +L  L  + L++N+++   P  L++  +L ++ L+N
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 37/203 (18%), Positives = 67/203 (33%), Gaps = 17/203 (8%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF 65
           +T T+   + +  +  L       T    +    L NL  L   +N    L  L   +  
Sbjct: 31  VTDTVT-QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQITDLAPLKNLTKI 87

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI----------GLL 115
              +L    L   +    + +      + T +              +            L
Sbjct: 88  TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL 147

Query: 116 KNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN 175
             L  L+         +    L NL++LT L    N +S   P  +  LP L  + L NN
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205

Query: 176 SLSGEISSVIANSTTLTMLSLYD 198
            +S      +AN++ L +++L +
Sbjct: 206 QISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 28/218 (12%), Positives = 68/218 (31%), Gaps = 22/218 (10%)

Query: 139 NLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYD 198
            L     +    ++++  + ++   L  +  L  +   ++  I   +     L  L L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 199 NSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQ------------ 246
           N +T   P         + L  +  K    +      +        +             
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 247 --NMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT 304
              +    + +            +S  + + S    + +L  ++ +    N  S      
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 305 VGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSD 342
           + +  NL E+ ++ NQIS   P  +    +L  + L++
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 30/218 (13%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 90  NVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMS 149
            + +   +    + +T  +      L  +  L  +       T  E +  L  L  L++ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 150 VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYD----------- 198
            N ++   P   L       L          I+ + +  T     +              
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 199 ---NSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD 255
                   ++           +  LS           + +  KL       N  S + P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLS 293
            LA   NL+   + NN +    P  + +  ++ I+ L+
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 315 FMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIP 374
               N  S  I S      SL ++++S+N L   +P+    L++L       N L + +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHL-AEVP 320

Query: 375 NSLSSLKSLNVLDLSNNLLTG--YIPESLCELLPNS 408
               +LK    L +  N L     IPES+ +L  NS
Sbjct: 321 ELPQNLKQ---LHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 102 NFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI 161
           N  +  I     L  +L +L +  N+ +   +P     L     L  S NHL+ ++PE  
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI--ELPALPPRLER---LIASFNHLA-EVPEL- 322

Query: 162 LRLPKLRVLQLYNNSLSGEISSVIANSTTL 191
                L+ L +  N L  E   +  +   L
Sbjct: 323 --PQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 33/117 (28%)

Query: 269 SNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSE 328
             N     I       P +  +++S N                             +P+ 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIE-------------------------LPAL 302

Query: 329 IYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNV 385
             R   L ++  S N L+  +P    NLK+L+   ++ N L    P+   S++ L +
Sbjct: 303 PPR---LERLIASFNHLAE-VPELPQNLKQLH---VEYNPL-REFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 124 YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISS 183
           YY    +  I         L +L++S N L  ++P      P+L  L    N L+ E+  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPE 321

Query: 184 VIANSTTLTMLSLYDNSLTG--EVPQDLG 210
           +  N   L  L +  N L    ++P+ + 
Sbjct: 322 LPQN---LKQLHVEYNPLREFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 64  IFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLEL 123
                 L  + ++   L  ++PA       L  L  + N +   +P    L +NL+QL +
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE---LPQNLKQLHV 331

Query: 124 YYNQQLAGTIPEELGNLTEL 143
            YN  L    P+   ++ +L
Sbjct: 332 EYN-PLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 196 LYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD 255
            Y N+ + E+         L  L++S NKL   LPA      +L+  +   N  +  +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAE-VPE 321

Query: 256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSI 289
                +NL +  V  N L    P+   S+  + +
Sbjct: 322 LP---QNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 36/107 (33%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRI 72
                +L  L++SNN    + P     L  L + SFN                 L     
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPPRLERL-IASFN----------------HLA---- 317

Query: 73  MVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLR 119
                     ++P    N   L  L +  N +    P     +++LR
Sbjct: 318 ----------EVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 49/304 (16%), Positives = 89/304 (29%), Gaps = 22/304 (7%)

Query: 114 LLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLY 173
           L +   +LEL        ++PE   +L     L  S N L+ ++PE    L  L V    
Sbjct: 36  LDRQAHELELNNLG--LSSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 174 NNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKV 233
             +LS               L     S          Q S  + +   +N     LP   
Sbjct: 90  LKALSDLPPL----------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139

Query: 234 CSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLS 293
            S   +            +               +          E I++  ++      
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

Query: 294 YNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI 353
             +          N    +   +  +  +  +       +  +   L+   +S  I SG+
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259

Query: 354 GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSN 413
             L      +  S+    S+ +   SL+    L++SNN L   +P     L    +  S 
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLE---ELNVSNNKLI-ELPALPPRL--ERLIASF 313

Query: 414 NRLS 417
           N L+
Sbjct: 314 NHLA 317

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (137), Expect = 4e-09
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 333 ISLVKIDLSDNLLS-GPIPSGIGNLKKLNLLMLQSNKLN----SSIPNSLSSLKSLNVLD 387
           + +  +D+    LS       +  L++  ++ L    L       I ++L    +L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 388 LSNNLLTGYIPESLCELLPNS 408
           L +N L       + + L   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTP 82

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 1e-08
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 142 ELTDLDMSVNHLSGKIPESIL-RLPKLRVLQLYNNSLSGE----ISSVIANSTTLTMLSL 196
           ++  LD+    LS      +L  L + +V++L +  L+      ISS +  +  L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 197 YDNSLTGEVPQDLGQW-----SPLVVLDLS 221
             N L       + Q        +  L L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 4e-07
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 139 NLTELTDLDMSVNHLSGK----IPESILRLPKLRVLQLYNNSLSGEISSVIA-----NST 189
             + L  L ++   +S      +  ++L    LR L L NN L       +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 190 TLTMLSLYDNSLTGEVPQDLGQ 211
            L  L LYD   + E+   L  
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 6e-07
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 117 NLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGK----IPESILRLPKLRVLQL 172
           +++ L++   +       E L  L +   + +    L+      I  ++   P L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 173 YNNSLSGEISSVIA-----NSTTLTMLSLYDN 199
            +N L       +       S  +  LSL + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 8e-07
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 355 NLKKLNLLMLQSNKLN----SSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN--- 407
               L +L L    ++    SS+  +L +  SL  LDLSNN L       L E +     
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 408 ---SINFSNNRLSGPIPLSLIKEGLVESFSGNPGLCV 441
               +   +   S  +   L  + L +     P L V
Sbjct: 427 LLEQLVLYDIYWSEEMEDRL--QALEKD---KPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 93  SLTDLELTGNFITGHIPPEI-GLLKNLRQLELYYNQ---QLAGTIPEELGNLTELTDLDM 148
            +  L++    ++     E+  LL+  + + L            I   L     L +L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 149 SVNHLSGKIPESILRLPKLRVLQLYNNSLSG 179
             N L       +L+  +    ++   SL  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 1e-06
 Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 355 NLKKLNLLMLQSNKLNSS-IPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPN-----S 408
           +++ L++   Q  +L+ +     L  L+   V+ L +  LT    + +   L        
Sbjct: 3   DIQSLDI---QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 409 INFSNNRLSGPIPLSLIK 426
           +N  +N L       +++
Sbjct: 60  LNLRSNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 9e-06
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 116 KNLRQLELYYNQ---QLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILR-----LPKL 167
             LR L L           ++   L     L +LD+S N L       ++         L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 168 RVLQLYNNSLSGEISSVIA----NSTTLTMLS 195
             L LY+   S E+   +     +  +L ++S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 290 IDLSYNSFS-GPIANTVGNARNLSELFMQRNQISGFIPSEIYRAI----SLVKIDLSDNL 344
           +D+     S    A  +   +    + +    ++     +I  A+    +L +++L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 345 LSGPIPSGIGNLKKLNLLMLQSNKLNS 371
           L       +    +     +Q   L +
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 307 NARNLSELFMQRNQISGFIPSEIYRAI----SLVKIDLSDNLLSGPIPSGIG-----NLK 357
               L  L++    +S    S +   +    SL ++DLS+N L       +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 358 KLNLLMLQSNKLNSSIPNSLSSLKSLN 384
            L  L+L     +  + + L +L+   
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 23/105 (21%)

Query: 260 CKNLLRFRVSNNHLEG----SIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELF 315
              L    +++  +      S+   +L+   +  +DLS N               L E  
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG------ILQLVESV 421

Query: 316 MQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLN 360
            Q                 L ++ L D   S  +   +  L+K  
Sbjct: 422 RQPG-------------CLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 26/108 (24%)

Query: 18  NLRRLDLSNNLFTGQFPLSVF-NLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLA 76
           +++ LD+     +      +   L   +V+  ++        L E+              
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC------GLTEARC------------ 44

Query: 77  TCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEI--GLLKNLRQLE 122
                  I +++    +L +L L  N +       +  GL     +++
Sbjct: 45  -----KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 87

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 5e-08
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 289 IIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGP 348
           ++ L++   +      +     ++ L +  N++    P+ +     L  +  SDN  +  
Sbjct: 2   VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN--ALE 56

Query: 349 IPSGIGNLKKLNLLMLQSNKLNS-SIPNSLSSLKSLNVLDLSNNLLTG--YIPESLCELL 405
              G+ NL +L  L+L +N+L   +    L S   L +L+L  N L     I E L E+L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 406 PN 407
           P+
Sbjct: 117 PS 118

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 84  IPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTEL 143
           +   +  +  +T L+L+ N +    P     L  LR LE+      A    + + NL  L
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALENVDGVANLPRL 67

Query: 144 TDLDMSVNHL-SGKIPESILRLPKLRVLQLYNNSLSGE---ISSVIANSTTLTML 194
            +L +  N L      + ++  P+L +L L  NSL  E      +     +++ +
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 97  LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGK 156
           L L    +T  +   +  L  +  L+L +N+     +P  L  L  L  L  S N    +
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNA--LE 56

Query: 157 IPESILRLPKLRVLQLYNNSL-SGEISSVIANSTTLTMLSLYDNSLTGE 204
             + +  LP+L+ L L NN L        + +   L +L+L  NSL  E
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 5/114 (4%)

Query: 9   TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLT 68
            L     +  +  LDLS+N      P ++  L  L              +  +       
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCL----EVLQASDNALENVDGVANLPR 66

Query: 69  KLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLE 122
              +++             + +   L  L L GN +      +  L + L  + 
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 193 MLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGV 252
           +L L    LT  V   L Q   +  LDLS N+L    PA + +   L+      N    V
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 253 LPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG 299
              +       L    +N   + +  + ++S P + +++L  NS   
Sbjct: 59  DGVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 39/323 (12%), Positives = 99/323 (30%), Gaps = 35/323 (10%)

Query: 116 KNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGK----IPESILRLPKLRVLQ 171
           K+L+   +        ++   L     + ++ +S N +  +    + E+I     L + +
Sbjct: 8   KSLKLDAITTED--EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 172 LYNNSL----------SGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLS 221
             +                +   +     L  + L DN+      + L  +         
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 222 ENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD--SLARCKNLLRFRVSNNHLEGSIPE 279
               +  L  +  ++       +  N  +   P   S+   +N L         +     
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 280 GILSLPHVSIIDLSYNSFSGPIANTVGNARNL----SELFMQRNQISGFIPSEIYRAISL 335
            +L    +    +        +   +   + L     +     +  S  +   +    +L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 336 VKIDLSDNLLSGPIPSGIGN------LKKLNLLMLQSNKLNSSIPNSLSS-----LKSLN 384
            ++ L+D LLS    + + +         L  L LQ N++      +L +     +  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 385 VLDLSNNLLT--GYIPESLCELL 405
            L+L+ N  +    + + + E+ 
Sbjct: 306 FLELNGNRFSEEDDVVDEIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 41/307 (13%), Positives = 91/307 (29%), Gaps = 31/307 (10%)

Query: 83  QIPASIGNVTSLTDLELTGNFITG----HIPPEIGLLKNLRQLELYYNQ--QLAGTIPEE 136
            + A +    S+ ++ L+GN I       +   I   K+L   E       ++   IPE 
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 137 LGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSL 196
           L  L +       ++ +            +  +  L  ++    +              +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 197 YDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVL----------- 245
                   V +      PL  +    N+L      +     +    L             
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 246 --QNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIAN 303
             +++    L          L+     +    ++   + S P++  + L+    S   A 
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 304 TVGNA------RNLSELFMQRNQISGFIPSEIYRAI-----SLVKIDLSDNLLSGPIPSG 352
            V +A        L  L +Q N+I       +   I      L+ ++L+ N  S      
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDV 320

Query: 353 IGNLKKL 359
           +  ++++
Sbjct: 321 VDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 357 KKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRL 416
           K L L  + +     S+   L    S+  + LS N +       L E + +  +      
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 417 SG 418
           S 
Sbjct: 67  SD 68

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 32/186 (17%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 192 TMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGK-LQYFLVLQNMFS 250
           T +      L  E+P+D+        L L++N+L       +  R   L    + +N  +
Sbjct: 11  TTVDCTGRGLK-EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 251 GVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARN 310
           G+ P++     ++   ++  N ++    +  L L  +  ++L  N  S  +  +  +  +
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 311 LSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLN 370
           L+ L +  N  +       +    L K  L+        PS    ++ + +  L  ++  
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAE-WLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFK 183

Query: 371 SSIPNS 376
            S  NS
Sbjct: 184 CSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 41/214 (19%), Positives = 72/214 (33%), Gaps = 31/214 (14%)

Query: 93  SLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNH 152
             T ++ TG  +   IP +I L  +  +L L  N+    +     G L  L  L++  N 
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 153 LSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQW 212
           L+G  P +      ++ LQL  N +    + +      L  L+LYDN ++  +P      
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 213 SPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNH 272
           + L                           L L +             + L +  ++   
Sbjct: 126 NSL-------------------------TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGA 160

Query: 273 LEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVG 306
                P     +  V I DL ++ F     N+ G
Sbjct: 161 ARCGAPS---KVRDVQIKDLPHSEFKCSSENSEG 191

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 9/147 (6%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF 65
           L      ++     R LDL               L   + + F++N   ++ KL      
Sbjct: 7   LIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN---EIRKLDGFP-- 60

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITG-HIPPEIGLLKNLRQLELY 124
            L +L+ +++    +          +  LT+L LT N +        +  LK+L  L + 
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 125 YN--QQLAGTIPEELGNLTELTDLDMS 149
            N            +  + ++  LD  
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 340 LSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPE 399
           L+  L+     +   N  +   L L+  K+   I N  ++L   + +D S+N +      
Sbjct: 3   LTAELIEQA--AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 400 SLCELL 405
            L   L
Sbjct: 60  PLLRRL 65

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 7e-06
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 14/171 (8%)

Query: 14  SPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIM 73
           + + ++ ++  +N+       +    L N+  L  N N    +  L          L   
Sbjct: 43  NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN 100

Query: 74  VLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKN----------LRQLEL 123
            +   +    +            +      +       + L  N          L +L+ 
Sbjct: 101 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDT 160

Query: 124 YYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN 174
              +    +    L  LT+L +L +S NH+S     ++  L  L VL+L++
Sbjct: 161 LSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 36/224 (16%), Positives = 82/224 (36%), Gaps = 20/224 (8%)

Query: 171 QLYNNSLSG--EISSVI--ANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS 226
            L + +++    I  +            +L   S+T  V Q+  + + +  +  + + + 
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 59

Query: 227 GPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPH 286
                +      +    +  N  + + P +  +    L    +      S+         
Sbjct: 60  SVQGIQYLP--NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLK------DL 111

Query: 287 VSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLS 346
             +  LS         N + +   L  L++  N+I+          +  + ++  DN +S
Sbjct: 112 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE--DNQIS 169

Query: 347 GPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSN 390
             +P  +  L KL  L L  N + S +  +L+ LK+L+VL+L +
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHI-SDLR-ALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 7/228 (3%)

Query: 168 RVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSG 227
           RV     + ++ EI S +        L      L          +  L  +++S+N +  
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 228 PLPAKVCSRGKLQYFLVLQNMFSGVL--PDSLARCKNLLRFRVSNNHLEGSIPEGILSLP 285
            + A V S     + + ++   + +   P++     NL    +SN  ++       +   
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 286 HVSIIDLSY--NSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDN 343
              ++D+    N  +    + VG +     L++ +N I                    +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 344 LLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN 391
            L               +L +   +++S     L +LK L      N 
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 9/44 (20%), Positives = 14/44 (31%)

Query: 133 IPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS 176
             +     +    LD+S   +       +  L KLR    YN  
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 30/234 (12%), Positives = 63/234 (26%), Gaps = 10/234 (4%)

Query: 146 LDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEV 205
                + ++ +IP  +        L+     L        +    L  + +  N +   +
Sbjct: 13  FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 206 PQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFS----GVLPDSLARCK 261
             D+    P +     E   +         +       +L +         +    +  K
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 262 NLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQI 321
            LL  + + N         +       I+ L+ N             +         N +
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 322 SGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPN 375
                   + A   V +D+S   +      G+ NLKKL      + K    +P 
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 5/48 (10%)

Query: 13  FSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLP 60
           F        LD+S           + NL  L   S        L KLP
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY-----NLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 9e-04
 Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 8/232 (3%)

Query: 190 TLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMF 249
           +  +    ++ +T E+P DL      + L     KL           G L+   + QN  
Sbjct: 9   SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 250 SGVLPDSLARCKNL----LRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTV 305
             V+   +             + +N           L      +I  +       +    
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 306 GNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQ 365
              + L ++    N  +    S +  +   V + L+ N +           +   L +  
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 366 SNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLS 417
           +N L     +         +LD+S   +   +P    E L      S   L 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNLK 236

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 92  TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVN 151
              + L  T +         +   +NL +L +   Q L      +L  L EL +L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 152 HLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT-GEVPQDLG 210
            L    P++    P+L  L L  N+L   +S       +L  L L  N L      + L 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 211 QWSPLVVLDLSENKLSGPLPAKVCSR 236
           +W    +  + E KL       +   
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHM 151

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 5/152 (3%)

Query: 259 RCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPI-ANTVGNARNLSELFMQ 317
                   R + +         +    +++ + +        +    +     L  L + 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 318 RNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLN-SSIPNS 376
           ++ +    P   +    L +++LS N L   +         L  L+L  N L+ S     
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCALRW 123

Query: 377 LSSLKSLNVLDLSNNLLTGYIPESLCELLPNS 408
           L   +   +  +    L  +    L   +PN+
Sbjct: 124 LQRWEEEGLGGVPEQKLQCHGQGPLAH-MPNA 154

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 6/139 (4%)

Query: 107 HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPK 166
            +   +    +  Q  L            +L        L+   + ++  +      +P+
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL---RSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPE 66

Query: 167 LRVLQLYNNSLSG--EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENK 224
           L  L L NN L    ++SS++  +  L +L+L  N L  E   D  +   L  L L  N 
Sbjct: 67  LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126

Query: 225 LSGPLPAKVCSRGKLQYFL 243
           LS     +      ++   
Sbjct: 127 LSDTFRDQSTYISAIRERF 145

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 19/177 (10%)

Query: 6   LTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIF 65
           +T T+   + +  +  L            +    L NL  ++F+ N    +  L   +  
Sbjct: 30  VTDTVS-QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLTDITPLKNLTKL 86

Query: 66  RLTKLRIMVLATCALHGQIPASIGNVTS------------LTDLELTGNFITGHIPPEIG 113
               +    +A       +    G                LT+L                
Sbjct: 87  VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL 146

Query: 114 LLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVL 170
                 Q   + + Q+    P  L NLT L  LD+S N +S      + +L  L  L
Sbjct: 147 SGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	840
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.3
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.3
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.93
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.59
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.31
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.34

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-50  Score=415.71  Aligned_cols=254  Identities=25%  Similarity=0.354  Sum_probs=197.2

Q ss_pred             hcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCcc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYC  606 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  606 (840)
                      +|+..+.||+|+||+||+|.+.+++.||||++....           ...+.|.+|++++++++|||||+++|+|.+.+.
T Consensus         6 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-----------~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~   74 (263)
T d1sm2a_           6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-----------MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP   74 (263)
T ss_dssp             CEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS-----------SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-----------CcHHHHHHHHHHHHhcCCCCcccccceeccCCc
Confidence            467788999999999999999889999999985322           113568999999999999999999999999999


Q ss_pred             ceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhh
Q 003199          607 NLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVL  686 (840)
Q Consensus       607 ~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~  686 (840)
                      .++||||+++|+|.+++......++|..+..++.|||.||+|||+   ++|+||||||+|||+++++.+||+|||+|+..
T Consensus        75 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~  151 (263)
T d1sm2a_          75 ICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFV  151 (263)
T ss_dssp             CEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCTTCSGGGEEECGGGCEEECSCC-----
T ss_pred             eEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhc---cceeecccchhheeecCCCCeEecccchheec
Confidence            999999999999999998776679999999999999999999999   99999999999999999999999999999876


Q ss_pred             hccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhC-CCCCCCCCCCCcchhhhhhhhhccccchhh
Q 003199          687 QARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITG-RKPVEDDFGDNKNIIYWVSIKVDTKEGIME  765 (840)
Q Consensus       687 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (840)
                      ...  .........||+.|+|||++.+..++.++|||||||++|||+|+ ++||...  .........   .       .
T Consensus       152 ~~~--~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~--~~~~~~~~i---~-------~  217 (263)
T d1sm2a_         152 LDD--QYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR--SNSEVVEDI---S-------T  217 (263)
T ss_dssp             ---------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSC--CHHHHHHHH---H-------H
T ss_pred             cCC--CceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCC--CHHHHHHHH---H-------h
Confidence            542  22233446789999999999999999999999999999999995 5555431  111111110   0       0


Q ss_pred             hcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          766 VLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       766 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      -.....+.   ....++.+++.+||+.||++||||+||+++|+++.
T Consensus       218 ~~~~~~p~---~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~  260 (263)
T d1sm2a_         218 GFRLYKPR---LASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIA  260 (263)
T ss_dssp             TCCCCCCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cCCCCCcc---ccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence            00111111   22346778888999999999999999999998763

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-50  Score=414.86  Aligned_cols=261  Identities=29%  Similarity=0.400  Sum_probs=200.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|...+.||+|+||+||+|.++  ..||||++......        ....+.|.+|++++++++|||||++++++.+ .
T Consensus         8 ~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~--------~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~   76 (276)
T d1uwha_           8 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPT--------PQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-P   76 (276)
T ss_dssp             TCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCC--------TTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-S
T ss_pred             ccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCC--------HHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-c
Confidence            45778899999999999999865  36999998543321        2335679999999999999999999998865 4


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++......++|..+..++.||++||+|||+   ++||||||||+|||++.++.+||+|||+|+.
T Consensus        77 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~  153 (276)
T d1uwha_          77 QLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATV  153 (276)
T ss_dssp             SCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTSSEEECCCCCSCC
T ss_pred             EEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhc---CCEeccccCHHHEEEcCCCCEEEccccceee
Confidence            6799999999999999998776679999999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcceecccccccccCcccccc---CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      .... ..........||+.|||||++.+   ..++.++|||||||++|||+||+.||.+...  ..... .... .    
T Consensus       154 ~~~~-~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~--~~~~~-~~~~-~----  224 (276)
T d1uwha_         154 KSRW-SGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINN--RDQII-FMVG-R----  224 (276)
T ss_dssp             -------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC--HHHHH-HHHH-H----
T ss_pred             cccc-CCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCCh--HHHHH-HHHh-c----
Confidence            6432 12233455679999999999864   3589999999999999999999999975321  11110 0000 0    


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                        ....+.......+....+.+++.+||+.||++||||+|++++|+.+.
T Consensus       225 --~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~  271 (276)
T d1uwha_         225 --GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLA  271 (276)
T ss_dssp             --TSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --CCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence              00111111111223356777888999999999999999999998764

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-49  Score=406.85  Aligned_cols=254  Identities=21%  Similarity=0.313  Sum_probs=209.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||+||+|.+++++.||||+++....           ..++|.+|++++++++||||++++|+|.+..
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-----------~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~   72 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----------SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR   72 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-----------CHHHHHHHHHHHHTCCCTTBCCEEEEECCSS
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-----------CHHHHHHHHHHHHhcCCCceeeEEEEEeeCC
Confidence            35778899999999999999999899999999864331           1356899999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|++.+++......+++..+..++.|+++||+|||+   ++|+||||||+||++++++.+||+|||+|+.
T Consensus        73 ~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~---~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~  149 (258)
T d1k2pa_          73 PIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRY  149 (258)
T ss_dssp             SEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTBCCSCCSGGGEEECTTCCEEECCCSSCCB
T ss_pred             ceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhh---cCcccccccceeEEEcCCCcEEECcchhhee
Confidence            9999999999999999987776689999999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....  .........||+.|+|||.+.+..++.++|||||||++|||+| |+.||.+...  ...   .. .+.      
T Consensus       150 ~~~~--~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~--~~~---~~-~i~------  215 (258)
T d1k2pa_         150 VLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN--SET---AE-HIA------  215 (258)
T ss_dssp             CSSS--SCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCH--HHH---HH-HHH------
T ss_pred             ccCC--CceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCH--HHH---HH-HHH------
Confidence            6442  2223345679999999999999999999999999999999998 8999975321  111   10 000      


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .......+   ......+.+++.+||+.||++|||++|++++|.++
T Consensus       216 ~~~~~~~p---~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         216 QGLRLYRP---HLASEKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             TTCCCCCC---TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             hCCCCCCc---ccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence            00001111   12234677888899999999999999999999764

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-50  Score=411.42  Aligned_cols=254  Identities=26%  Similarity=0.395  Sum_probs=202.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....         ....+.+.+|++++++++|||||++++++.+.
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~---------~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~   75 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---------VDCPENIKKEICINKMLNHENVVKFYGHRREG   75 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------------CHHHHHHHHHTCCCTTBCCEEEEEEET
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhc---------chHHHHHHHHHHHHHhCCCCCEeeEeeeeccC
Confidence            4688899999999999999965 5799999999854321         12235688999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+|||+++++.+||+|||+|+
T Consensus        76 ~~~~ivmEy~~gg~L~~~l~~~~-~l~e~~~~~i~~qi~~al~ylH~---~~IiHrDiKp~NILl~~~~~~KL~DFG~a~  151 (271)
T d1nvra_          76 NIQYLFLEYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLAT  151 (271)
T ss_dssp             TEEEEEEECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             ceeEEEEeccCCCcHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHH---cCCccCcccHHHEEECCCCCEEEccchhhe
Confidence            99999999999999999997654 79999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      ..... ..........||+.|||||++.+..+ +.++||||+||++|||++|+.||............+.   ..     
T Consensus       152 ~~~~~-~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~---~~-----  222 (271)
T d1nvra_         152 VFRYN-NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK---EK-----  222 (271)
T ss_dssp             ECEET-TEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHH---TT-----
T ss_pred             eeccC-CccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHh---cC-----
Confidence            76432 12223445689999999999988776 6789999999999999999999975432211111110   00     


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           ............++.+++.+|++.||++|||++|++++
T Consensus       223 -----~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  260 (271)
T d1nvra_         223 -----KTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKD  260 (271)
T ss_dssp             -----CTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             -----CCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence                 00011112223456678889999999999999999764

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-49  Score=414.77  Aligned_cols=259  Identities=25%  Similarity=0.360  Sum_probs=196.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc---EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE---VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~---~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      +.|+..+.||+|+||+||+|..+ +|+   .||||++.....         ....+.|.+|++++++++|||||+++|++
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~HpnIv~l~g~~   96 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT---------EKQRRDFLSEASIMGQFDHPNVIHLEGVV   96 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCC---------HHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccC---------HHHHHHHHHHHHHHHhCCCCCCccEEEEE
Confidence            34566789999999999999764 332   588998743321         23356799999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+.+..++|||||++|+|.+++......++|.++..++.|||+||+|||+   ++||||||||+|||++.++.+||+|||
T Consensus        97 ~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG  173 (299)
T d1jpaa_          97 TKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFG  173 (299)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             eeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhh---CCCccCccccceEEECCCCcEEECCcc
Confidence            99999999999999999999998876679999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCC--cceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhc
Q 003199          682 IAKVLQARGGKD--STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       682 ~a~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      +|+.........  .......||+.|||||.+.++.++.++|||||||++|||+| |+.||.+..  .......      
T Consensus       174 la~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~--~~~~~~~------  245 (299)
T d1jpaa_         174 LSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMT--NQDVINA------  245 (299)
T ss_dssp             ----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHH------
T ss_pred             cceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCC--HHHHHHH------
Confidence            998775432211  12223568999999999999999999999999999999998 899997531  1111111      


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                             +......+...+....+.+++.+||+.||++||||+||++.|+++-
T Consensus       246 -------i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l  291 (299)
T d1jpaa_         246 -------IEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMI  291 (299)
T ss_dssp             -------HHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             -------HHcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence                   0011111112233456778888999999999999999999998753

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-49  Score=407.13  Aligned_cols=249  Identities=29%  Similarity=0.456  Sum_probs=204.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....       ......+.+.+|++++++++|||||++++++.+.
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~-------~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~   78 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQL-------EKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA   78 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHc-------cChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEEC
Confidence            5688899999999999999966 4789999999853321       1123356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+
T Consensus        79 ~~~~ivmEy~~~g~L~~~l~~~~-~l~e~~~~~i~~qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~~kl~DFG~a~  154 (263)
T d2j4za1          79 TRVYLILEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSV  154 (263)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCSCS
T ss_pred             CEEEEEEeecCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeeeeeccccceecCCCCEeecccceee
Confidence            99999999999999999998764 69999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....     .......||+.|||||++.+..++.++|||||||++|||++|+.||.+..    ....+... ...     
T Consensus       155 ~~~~-----~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~----~~~~~~~i-~~~-----  219 (263)
T d2j4za1         155 HAPS-----SRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT----YQETYKRI-SRV-----  219 (263)
T ss_dssp             CCCC-----CCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHH-HTT-----
T ss_pred             ecCC-----CcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCC----HHHHHHHH-HcC-----
Confidence            6532     23345679999999999999999999999999999999999999997531    11111110 000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         ...++...   ..++.+++.+|++.||++|||++|+++|
T Consensus       220 ---~~~~p~~~---s~~~~~li~~~L~~dp~~R~t~~eil~h  255 (263)
T d2j4za1         220 ---EFTFPDFV---TEGARDLISRLLKHNPSQRPMLREVLEH  255 (263)
T ss_dssp             ---CCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             ---CCCCCccC---CHHHHHHHHHHccCCHhHCcCHHHHHcC
Confidence               11122222   3456678889999999999999999874

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-49  Score=408.96  Aligned_cols=255  Identities=25%  Similarity=0.331  Sum_probs=190.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec-
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS-  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-  603 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++......        ....+.+.+|++++++++|||||++++++.+ 
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~--------~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   75 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT--------EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR   75 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSC--------HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC-
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCC--------HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeC
Confidence            5788899999999999999965 57999999998543311        2235678999999999999999999999864 


Q ss_pred             -CccceEEEeecCCCChHHHhhcC---CCCCChHHHHHHHHHHHHHHHHHhhcC--CCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 -LYCNLLVYEYMPNGNLWDALHKG---LVHLDWPTRHKIAFGVAQGLAYLHHGL--LSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 -~~~~~lV~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~--~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                       ....++||||+++|+|.+++.+.   ...+++..++.++.|++.||+|||+..  ..+||||||||+|||++.++.+||
T Consensus        76 ~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl  155 (269)
T d2java1          76 TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKL  155 (269)
T ss_dssp             ---CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEE
T ss_pred             CCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEE
Confidence             45678999999999999998642   347999999999999999999999821  124999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +|||+|+.+...   ........||+.|||||++.+..++.++|||||||++|||+||+.||.+..  ....   ... .
T Consensus       156 ~DFG~a~~~~~~---~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~--~~~~---~~~-i  226 (269)
T d2java1         156 GDFGLARILNHD---TSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS--QKEL---AGK-I  226 (269)
T ss_dssp             CCHHHHHHC--------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHH---HHH-H
T ss_pred             eeccceeecccC---CCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCC--HHHH---HHH-H
Confidence            999999886432   222345689999999999999999999999999999999999999997531  1111   000 0


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            .......++..+   ..++.+++.+||+.||++|||++|++++
T Consensus       227 ------~~~~~~~~~~~~---s~~l~~li~~~L~~dp~~Rps~~ell~h  266 (269)
T d2java1         227 ------REGKFRRIPYRY---SDELNEIITRMLNLKDYHRPSVEEILEN  266 (269)
T ss_dssp             ------HHTCCCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ------HcCCCCCCCccc---CHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence                  000011122222   3456778889999999999999999875

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-49  Score=409.56  Aligned_cols=254  Identities=25%  Similarity=0.370  Sum_probs=202.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||+||+|.+++++.||||++....           ...+.|.+|++++++++|||||+++|++.+ +
T Consensus        13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-----------~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~   80 (272)
T d1qpca_          13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-----------MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-E   80 (272)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-----------SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-----------CCHHHHHHHHHHHHhCCCCCEeEEEeeecc-C
Confidence            4678889999999999999999988999999985322           113568999999999999999999998865 5


Q ss_pred             cceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++|+|.+++.... ..++|..+..|+.||++||+|||+   ++|+||||||+|||+++++.+||+|||+|+
T Consensus        81 ~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DFGla~  157 (272)
T d1qpca_          81 PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLAR  157 (272)
T ss_dssp             SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccchhheeeecccceeeccccceE
Confidence            6789999999999999776542 358999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....  ..........||+.|||||++.++.++.++|||||||++|||+||..|+..... ........          .
T Consensus       158 ~~~~--~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~-~~~~~~~i----------~  224 (272)
T d1qpca_         158 LIED--NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT-NPEVIQNL----------E  224 (272)
T ss_dssp             ECSS--SCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHH----------H
T ss_pred             EccC--CccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCC-HHHHHHHH----------H
Confidence            7643  222333456789999999999988999999999999999999996555432211 11111110          0


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .......+..   ...++.+++.+||+.||++||||+||++.|+++
T Consensus       225 ~~~~~~~p~~---~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~  267 (272)
T d1qpca_         225 RGYRMVRPDN---CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF  267 (272)
T ss_dssp             TTCCCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             hcCCCCCccc---ChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhh
Confidence            0011111222   234567788899999999999999999999864

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-49  Score=410.01  Aligned_cols=256  Identities=21%  Similarity=0.281  Sum_probs=204.6

Q ss_pred             hcCccC-eeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          527 AMTEKN-KVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       527 ~~~~~~-~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      ++...+ +||+|+||+||+|.++   ++..||||++....         .....+.|.+|++++++++|||||+++|++.
T Consensus         9 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~---------~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~   79 (285)
T d1u59a_           9 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---------EKADTEEMMREAQIMHQLDNPYIVRLIGVCQ   79 (285)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---------CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             CeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhc---------CHHHHHHHHHHHHHHHhCCCCCEeeEeeeec
Confidence            344555 4999999999999654   35579999985332         1233567999999999999999999999987


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGI  682 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~  682 (840)
                      + +..++||||+++|+|.+++......+++..+..++.||+.||+|||+   ++||||||||+||+++.++.+||+|||+
T Consensus        80 ~-~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGl  155 (285)
T d1u59a_          80 A-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGL  155 (285)
T ss_dssp             S-SSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTT
T ss_pred             c-CeEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCcCchhheeeccCCceeeccchh
Confidence            5 45789999999999999987766679999999999999999999999   9999999999999999999999999999


Q ss_pred             hhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          683 AKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       683 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      |+.+..............||+.|+|||++.++.++.++|||||||++|||+| |+.||.+...  ......+   ..   
T Consensus       156 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~--~~~~~~i---~~---  227 (285)
T d1u59a_         156 SKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFI---EQ---  227 (285)
T ss_dssp             CEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT--HHHHHHH---HT---
T ss_pred             hhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCH--HHHHHHH---Hc---
Confidence            9877543333333445678999999999999999999999999999999998 9999975321  1111110   00   


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                          -.....++   ....++.+++.+||+.||++|||+.+|++.|+..
T Consensus       228 ----~~~~~~p~---~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~  269 (285)
T d1u59a_         228 ----GKRMECPP---ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC  269 (285)
T ss_dssp             ----TCCCCCCT---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ----CCCCCCCC---cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                00111122   2335677888899999999999999999998754

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-49  Score=408.39  Aligned_cols=259  Identities=27%  Similarity=0.358  Sum_probs=199.1

Q ss_pred             hcCccCeeeccCCcEEEEEEeCCC-----cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLNSG-----EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~~~-----~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      .|+..+.||+|+||+||+|.+++.     ..||||++.....         ......|.+|++++++++|||||+++|++
T Consensus         8 ~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~---------~~~~~~~~~E~~il~~l~H~nIv~~~g~~   78 (283)
T d1mqba_           8 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT---------EKQRVDFLGEAGIMGQFSHHNIIRLEGVI   78 (283)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC---------HHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             HeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccC---------hHHHHHHHHHHHHHHhcCCCCEeeeeEEE
Confidence            467788999999999999976532     3799999843321         22345789999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+....++||||+.+|++.+.+......++|.++..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||
T Consensus        79 ~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG  155 (283)
T d1mqba_          79 SKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFG  155 (283)
T ss_dssp             CSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCC
T ss_pred             ecCCceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccc---cccccCccccceEEECCCCeEEEcccc
Confidence            99999999999999999999888776789999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +|+.+..............||+.|||||++.++.++.++|||||||++|||++|..|+..... ......          
T Consensus       156 la~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~-~~~~~~----------  224 (283)
T d1mqba_         156 LSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS-NHEVMK----------  224 (283)
T ss_dssp             C-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-HHHHHH----------
T ss_pred             hhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCC-HHHHHH----------
Confidence            998875432333334456789999999999999999999999999999999997666543211 111111          


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                         .+.+....+...+....+.+++.+||+.||++||||.||++.|+++.
T Consensus       225 ---~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~  271 (283)
T d1mqba_         225 ---AINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLI  271 (283)
T ss_dssp             ---HHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             ---HHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHh
Confidence               11111111112223456778899999999999999999999998654

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-49  Score=407.69  Aligned_cols=250  Identities=26%  Similarity=0.369  Sum_probs=203.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....          ...+.+.+|++++++++|||||++++++.+.
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~----------~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   89 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ----------PKKELIINEILVMRENKNPNIVNYLDSYLVG   89 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGC----------SCHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccC----------hHHHHHHHHHHHHHhCCCCCEeeEeEEEEEC
Confidence            3688899999999999999965 5799999999854321          1235688999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++|+|.+++.+.  .+++.++..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+
T Consensus        90 ~~~~ivmEy~~gg~L~~~~~~~--~l~~~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~vkl~DFG~a~  164 (293)
T d1yhwa1          90 DELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (293)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CEEEEEEEecCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCcHHHeEECCCCcEeeccchhhe
Confidence            9999999999999999988765  58999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+..   .........||+.|+|||++.+..++.++||||+||++|||++|+.||.+...  ... .+.  .....    
T Consensus       165 ~~~~---~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~--~~~-~~~--~~~~~----  232 (293)
T d1yhwa1         165 QITP---EQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP--LRA-LYL--IATNG----  232 (293)
T ss_dssp             ECCS---TTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHH-HHH--HHHHC----
T ss_pred             eecc---ccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCH--HHH-HHH--HHhCC----
Confidence            7643   22234556799999999999999999999999999999999999999975311  111 010  00000    


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                       ...  + .........+.+++.+||+.||++|||+.|+++|
T Consensus       233 -~~~--~-~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~H  270 (293)
T d1yhwa1         233 -TPE--L-QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (293)
T ss_dssp             -SCC--C-SSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTC
T ss_pred             -CCC--C-CCcccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             000  0 1112223456778889999999999999999875

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-49  Score=409.03  Aligned_cols=257  Identities=24%  Similarity=0.293  Sum_probs=207.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.++ +|+.||||++.....           ..+.|.+|++++++++|||||+++++|.+.
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-----------~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   85 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-----------EVEEFLKEAAVMKEIKHPNLVQLLGVCTRE   85 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-----------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-----------hHHHHHHHHHHHHhCCCCCEecCCccEeeC
Confidence            46788889999999999999765 689999999853321           135688999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      +..++||||+++|+|.+++... ...++|..+..++.||+.||+|||+   ++||||||||+|||+++++.+||+|||+|
T Consensus        86 ~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG~a  162 (287)
T d1opja_          86 PPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLS  162 (287)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCCT
T ss_pred             CeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH---CCcccCccccCeEEECCCCcEEEccccce
Confidence            9999999999999999999764 4578999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +....  ..........||+.|+|||++.+..++.++|||||||++|||++|..|+..... ........          
T Consensus       163 ~~~~~--~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~-~~~~~~~i----------  229 (287)
T d1opja_         163 RLMTG--DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID-LSQVYELL----------  229 (287)
T ss_dssp             TTCCS--SSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCC-HHHHHHHH----------
T ss_pred             eecCC--CCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcch-HHHHHHHH----------
Confidence            87643  222333445689999999999999999999999999999999997777643211 11110000          


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      ..-.....+.   ....++.+++.+||+.||++|||++|+++.|+.+..
T Consensus       230 ~~~~~~~~~~---~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~  275 (287)
T d1opja_         230 EKDYRMERPE---GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  275 (287)
T ss_dssp             HTTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTS
T ss_pred             hcCCCCCCCc---cchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            0001111122   233467788889999999999999999999987643

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-49  Score=405.85  Aligned_cols=251  Identities=25%  Similarity=0.311  Sum_probs=197.2

Q ss_pred             CeeeccCCcEEEEEEeC---CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccce
Q 003199          532 NKVGQGGSGTVYKIDLN---SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNL  608 (840)
Q Consensus       532 ~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  608 (840)
                      ++||+|+||+||+|.++   +++.||||++.....        .....+.|.+|++++++++|||||+++++|.+ +..+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~--------~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~   83 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN--------DPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWM   83 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhC--------CHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEE
Confidence            47999999999999654   356899999843321        12335679999999999999999999999965 4568


Q ss_pred             EEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhc
Q 003199          609 LVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQA  688 (840)
Q Consensus       609 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~  688 (840)
                      +||||+++|+|.+++.... .++|.++..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+.+..
T Consensus        84 lvmE~~~~g~L~~~l~~~~-~l~~~~~~~i~~qi~~gl~ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~  159 (277)
T d1xbba_          84 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  159 (277)
T ss_dssp             EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             EEEEcCCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHhhHHh---CCcccCCCcchhhcccccCcccccchhhhhhccc
Confidence            9999999999999998764 69999999999999999999999   9999999999999999999999999999987654


Q ss_pred             cCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccchhhhc
Q 003199          689 RGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVL  767 (840)
Q Consensus       689 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  767 (840)
                      ............||+.|||||.+.+..++.++|||||||++|||+| |+.||.+..  .......    +...      .
T Consensus       160 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~--~~~~~~~----i~~~------~  227 (277)
T d1xbba_         160 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK--GSEVTAM----LEKG------E  227 (277)
T ss_dssp             TCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC--HHHHHHH----HHTT------C
T ss_pred             cccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC--HHHHHHH----HHcC------C
Confidence            3222333345679999999999999999999999999999999998 899997531  1111110    0000      0


Q ss_pred             ccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          768 DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       768 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ....+.   ....++.+++.+||+.||++|||+++|++.|+..
T Consensus       228 ~~~~p~---~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~  267 (277)
T d1xbba_         228 RMGCPA---GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY  267 (277)
T ss_dssp             CCCCCT---TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             CCCCCc---ccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence            011112   2335667788899999999999999999888753

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-49  Score=406.94  Aligned_cols=252  Identities=23%  Similarity=0.283  Sum_probs=201.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      +.|+..+.||+|+||+||+|.. .+|+.||||++.....          ...+.+.+|++++++++|||||++++++.+.
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~----------~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~   81 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSE----------EELEDYMVEIDILASCDHPNIVKLLDAFYYE   81 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSS----------GGGGGTHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCH----------HHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC
Confidence            3577888999999999999965 5799999999854321          1234678899999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++|+|.+++.+....+++.++..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+
T Consensus        82 ~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~---~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~  158 (288)
T d2jfla1          82 NNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSA  158 (288)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEEeecChhheeECCCCCEEEEechhhh
Confidence            99999999999999999987665579999999999999999999999   999999999999999999999999999997


Q ss_pred             hhhccCCCCcceecccccccccCccccc-----cCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAY-----SSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      .....   ........||+.|||||++.     +..++.++|||||||++|||+||+.||.+...  ....  .... ..
T Consensus       159 ~~~~~---~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~--~~~~--~~i~-~~  230 (288)
T d2jfla1         159 KNTRT---IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNP--MRVL--LKIA-KS  230 (288)
T ss_dssp             ECHHH---HHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCG--GGHH--HHHH-HS
T ss_pred             ccCCC---cccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCH--HHHH--HHHH-cC
Confidence            65321   11233567999999999883     45689999999999999999999999975321  1111  1100 00


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .       .+ ..........++.+++.+||+.||++|||++|+++|
T Consensus       231 ~-------~~-~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~h  269 (288)
T d2jfla1         231 E-------PP-TLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH  269 (288)
T ss_dssp             C-------CC-CCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             C-------CC-CCCccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            0       00 001112233566778889999999999999999875

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-48  Score=413.29  Aligned_cols=264  Identities=24%  Similarity=0.384  Sum_probs=203.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....         ....+.+.+|+.++++++|||||+++++|.+.
T Consensus         6 d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~---------~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~   76 (322)
T d1s9ja_           6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK---------PAIRNQIIRELQVLHECNSPYIVGFYGAFYSD   76 (322)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCC---------TTHHHHHHHHGGGGGGCCCTTBCCEEEEEECS
T ss_pred             cCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhC---------HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC
Confidence            5688899999999999999965 5799999999854321         12346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.+.. .+++..+..++.|++.||+|||+.  ++|+||||||+|||+++++.+||+|||+|+
T Consensus        77 ~~~~iVmEy~~gg~L~~~l~~~~-~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~  153 (322)
T d1s9ja_          77 GEISICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSG  153 (322)
T ss_dssp             SEEEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCH
T ss_pred             CEEEEEEEcCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCcc
Confidence            99999999999999999998764 699999999999999999999971  389999999999999999999999999999


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc----
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK----  760 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~----  760 (840)
                      .+...     ......||+.|+|||++.+..|+.++||||+||++|||++|+.||.....................    
T Consensus       154 ~~~~~-----~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  228 (322)
T d1s9ja_         154 QLIDS-----MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPP  228 (322)
T ss_dssp             HHHHH-----TC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC-------------
T ss_pred             ccCCC-----ccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCc
Confidence            87542     223468999999999999999999999999999999999999999764221110000000000000    


Q ss_pred             -------------------cchhh----hcccccCCCc-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 -------------------EGIME----VLDKKLSGSF-RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 -------------------~~~~~----~~~~~~~~~~-~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                                         ....+    ......+... .....++.+++.+|++.||++|||++|+++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~H  298 (322)
T d1s9ja_         229 RPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  298 (322)
T ss_dssp             -----------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccccccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence                               00000    0000000000 0112457788889999999999999999986

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-48  Score=395.81  Aligned_cols=246  Identities=25%  Similarity=0.348  Sum_probs=192.9

Q ss_pred             ccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec----C
Q 003199          530 EKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS----L  604 (840)
Q Consensus       530 ~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~  604 (840)
                      ..++||+|+||+||+|.. .+++.||||++......        ....+.+.+|++++++++|||||++++++.+    .
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~--------~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   84 (270)
T d1t4ha_          13 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT--------KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGK   84 (270)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--------HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSC
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC--------HHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccC
Confidence            345799999999999965 47899999998543311        2335678999999999999999999999864    3


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCCEEEc-CCCCCeeeccc
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSP--IIHRDIKSTNILLD-VNYQPKVADFG  681 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~-~~~~~kl~Dfg  681 (840)
                      ...++||||+++|+|.+++.+.. .+++.++..++.||++||+|||+   ++  |+||||||+|||++ +++.+||+|||
T Consensus        85 ~~~~ivmE~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~gl~yLH~---~~~~IiHrDiKp~NILl~~~~~~~Kl~DFG  160 (270)
T d1t4ha_          85 KCIVLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLG  160 (270)
T ss_dssp             EEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTT
T ss_pred             CEEEEEEeCCCCCcHHHHHhccc-cccHHHHHHHHHHHHHHHHHHHH---CCCCEEeCCcChhhceeeCCCCCEEEeecC
Confidence            55789999999999999998764 68999999999999999999998   66  99999999999996 57899999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +|+...     ........||+.|||||++.+ .++.++|||||||++|||++|+.||.+...    .....+...... 
T Consensus       161 la~~~~-----~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~----~~~~~~~i~~~~-  229 (270)
T d1t4ha_         161 LATLKR-----ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRVTSGV-  229 (270)
T ss_dssp             GGGGCC-----TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHHTTTC-
T ss_pred             cceecc-----CCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCccc----HHHHHHHHHcCC-
Confidence            997642     223345689999999998865 699999999999999999999999974311    111111000000 


Q ss_pred             chhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                           ........   ...++.+++.+||+.||++|||++|+++|
T Consensus       230 -----~~~~~~~~---~~~~~~~li~~~l~~dp~~R~s~~ell~H  266 (270)
T d1t4ha_         230 -----KPASFDKV---AIPEVKEIIEGCIRQNKDERYSIKDLLNH  266 (270)
T ss_dssp             -----CCGGGGGC---CCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             -----CCcccCcc---CCHHHHHHHHHHccCCHhHCcCHHHHhCC
Confidence                 00111111   22346678889999999999999999875

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-48  Score=405.23  Aligned_cols=267  Identities=23%  Similarity=0.313  Sum_probs=207.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....       ......+.+.+|++++++++||||+++++++.+.
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-------~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~   80 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHI-------IKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD   80 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECS
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHc-------cCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEEC
Confidence            5688899999999999999965 5799999999853321       1122346789999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|+|.+++.... .+++..+..++.|++.||+|||+   ++||||||||+|||+++++.+||+|||+|+
T Consensus        81 ~~~~ivmEy~~gg~L~~~~~~~~-~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~NIll~~~~~vkl~DFG~a~  156 (288)
T d1uu3a_          81 EKLYFGLSYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAK  156 (288)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEEccCCCCHHHhhhccC-CCCHHHHHHHHHHHHHHHHhhcc---ccEEcCcCCccccccCCCceEEecccccce
Confidence            99999999999999999988764 69999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+... ..........||+.|||||++.+..++.++||||+||++|||++|+.||.+..    ........ ...     
T Consensus       157 ~~~~~-~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~----~~~~~~~i-~~~-----  225 (288)
T d1uu3a_         157 VLSPE-SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN----EYLIFQKI-IKL-----  225 (288)
T ss_dssp             ECC-----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHH-HTT-----
T ss_pred             ecccC-CcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcC----HHHHHHHH-HcC-----
Confidence            76432 12223345679999999999999999999999999999999999999997531    11001000 000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCCCCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKF  820 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~~~~  820 (840)
                         ...++..+   ..++.+++.+||+.||++|||++|++++-+-.....+...++
T Consensus       226 ---~~~~p~~~---s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~w  275 (288)
T d1uu3a_         226 ---EYDFPEKF---FPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW  275 (288)
T ss_dssp             ---CCCCCTTC---CHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCC
T ss_pred             ---CCCCCccC---CHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCCCH
Confidence               01122222   345667888999999999999999866544333333444333

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.3e-48  Score=405.80  Aligned_cols=254  Identities=24%  Similarity=0.347  Sum_probs=190.0

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +.+.|+..+.||+|+||+||+|.. .+|+.||||++......         ...+.+.+|++++++++|||||++++++.
T Consensus         7 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~---------~~~~~~~~Ei~il~~l~HpnIv~l~~~~~   77 (307)
T d1a06a_           7 IRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALE---------GKEGSMENEIAVLHKIKHPNIVALDDIYE   77 (307)
T ss_dssp             GGGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-------------------CHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             CccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhh---------hHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            345688899999999999999965 47999999998543311         12356789999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc---CCCCCeeec
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD---VNYQPKVAD  679 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~D  679 (840)
                      +....++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++||||||||+||++.   +++.+||+|
T Consensus        78 ~~~~~~lvmE~~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~Nil~~~~~~~~~vkl~D  153 (307)
T d1a06a_          78 SGGHLYLIMQLVSGGELFDRIVEKG-FYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISD  153 (307)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHTCS-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECC
T ss_pred             ECCEEEEEEeccCCCcHHHhhhccc-CCCHHHHHHHHHHHHHHHHhhhh---ceeeeEEecccceeecccCCCceEEEec
Confidence            9999999999999999999997754 79999999999999999999999   9999999999999995   578999999


Q ss_pred             ccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          680 FGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       680 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      ||+|+....    ........||+.|||||++.+..++.++||||+||++|||++|+.||.+...    ...+... ...
T Consensus       154 FG~a~~~~~----~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~----~~~~~~i-~~~  224 (307)
T d1a06a_         154 FGLSKMEDP----GSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND----AKLFEQI-LKA  224 (307)
T ss_dssp             C----------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHHHH-HTT
T ss_pred             cceeEEccC----CCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCH----HHHHHHH-hcc
Confidence            999986533    2233456799999999999999999999999999999999999999975311    1111111 000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..    ...   .+...+....+.+++.+|++.||++|||++|++++
T Consensus       225 ~~----~~~---~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  264 (307)
T d1a06a_         225 EY----EFD---SPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQH  264 (307)
T ss_dssp             CC----CCC---TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             CC----CCC---CccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            00    000   11112233556778889999999999999999986

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-47  Score=406.61  Aligned_cols=256  Identities=23%  Similarity=0.324  Sum_probs=202.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC-C-----cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS-G-----EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~-~-----~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|+..+.||+|+||+||+|.... +     ..||||++.....         ......+.+|+.++.++ +|||||+++
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l~~HpnIv~l~  107 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD---------SSEREALMSELKMMTQLGSHENIVNLL  107 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------------CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccC---------HHHHHHHHHHHHHHHHhcCCCcEeEEE
Confidence            468888999999999999996542 2     3699998853321         22345788999999998 899999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC----------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL----------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSP  656 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~  656 (840)
                      +++.+.+..++||||+++|+|.+++....                      ..++|..++.++.||++||+|||+   ++
T Consensus       108 ~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~---~~  184 (325)
T d1rjba_         108 GACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KS  184 (325)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             EEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            99999999999999999999999997642                      248999999999999999999999   99


Q ss_pred             eEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-C
Q 003199          657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-G  735 (840)
Q Consensus       657 ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g  735 (840)
                      ||||||||+||+++.++.+||+|||+|+..... ..........||+.|||||++.+..++.++|||||||++|||+| |
T Consensus       185 IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~-~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g  263 (325)
T d1rjba_         185 CVHRDLAARNVLVTHGKVVKICDFGLARDIMSD-SNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLG  263 (325)
T ss_dssp             EEETTCSGGGEEEETTTEEEECCCGGGSCGGGC-TTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTS
T ss_pred             eeeccCchhccccccCCeEEEeeccccccccCC-CceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCC
Confidence            999999999999999999999999999876542 22223345678999999999999999999999999999999998 8


Q ss_pred             CCCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhh
Q 003199          736 RKPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLA  808 (840)
Q Consensus       736 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~  808 (840)
                      +.||.+... .......+.          .......+.   ....++.+++.+||+.||++|||++||+++|.
T Consensus       264 ~~Pf~~~~~-~~~~~~~~~----------~~~~~~~p~---~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         264 VNPYPGIPV-DANFYKLIQ----------NGFKMDQPF---YATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             CCSSTTCCC-SHHHHHHHH----------TTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCCCCCCH-HHHHHHHHh----------cCCCCCCCC---cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            999975321 111111110          000111111   22346778888999999999999999999995

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-47  Score=396.78  Aligned_cols=257  Identities=28%  Similarity=0.388  Sum_probs=199.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..+.||+|+||+||+|..++++.||||++.....           ..+.|.+|+.++++++|||||++++++.+ +
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~-----------~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~   84 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----------SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E   84 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-----------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC-----------CHHHHHHHHHHHHhcccCCEeEEEEEEec-C
Confidence            56888999999999999999998888999999853321           13578999999999999999999999865 5


Q ss_pred             cceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          606 CNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ..++||||+++|+|..++... ...++|.++..++.||+.||+|||+   .+|+||||||+|||+++++++||+|||+|+
T Consensus        85 ~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~---~~ivH~DlKp~NIll~~~~~~kl~DfGla~  161 (285)
T d1fmka3          85 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  161 (285)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             CeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhh---hheecccccceEEEECCCCcEEEcccchhh
Confidence            678999999999999888654 2468999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .....  .........||+.|+|||++.++.++.++|||||||++|||++|..|+..... ......++.          
T Consensus       162 ~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~-~~~~~~~i~----------  228 (285)
T d1fmka3         162 LIEDN--EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-NREVLDQVE----------  228 (285)
T ss_dssp             ----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHH----------
T ss_pred             hccCC--CceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCC-HHHHHHHHH----------
Confidence            76432  22333456799999999999999999999999999999999997666543211 111111110          


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                      .........   ....++.+++.+||+.||++||||++|++.|++....
T Consensus       229 ~~~~~~~~~---~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~  274 (285)
T d1fmka3         229 RGYRMPCPP---ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  274 (285)
T ss_dssp             TTCCCCCCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             hcCCCCCCc---ccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcC
Confidence            000111122   2234577888899999999999999999999886544

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.8e-47  Score=408.02  Aligned_cols=254  Identities=21%  Similarity=0.352  Sum_probs=206.8

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +.++|+..+.||+|+||+||+|.. .+|+.||||++....          ....+.+.+|+.++++++|||||++++++.
T Consensus        24 il~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~----------~~~~~~~~~E~~il~~l~HpnIv~~~~~~~   93 (350)
T d1koaa2          24 VLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH----------ESDKETVRKEIQTMSVLRHPTLVNLHDAFE   93 (350)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS----------HHHHHHHHHHHHHHHHTCCTTBCCEEEEEE
T ss_pred             CccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc----------hhhHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            456899999999999999999965 579999999985332          123467889999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC--CCCCeeecc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV--NYQPKVADF  680 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~--~~~~kl~Df  680 (840)
                      +....++|||||++|+|.+++......+++..+..++.||+.||+|||+   ++||||||||+|||++.  ++.+||+||
T Consensus        94 ~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHrDiKp~NIll~~~~~~~vkL~DF  170 (350)
T d1koaa2          94 DDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDF  170 (350)
T ss_dssp             ETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTSCCEEECCC
T ss_pred             ECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh---cCCeeeeechhHeeeccCCCCeEEEeec
Confidence            9999999999999999999997665579999999999999999999999   99999999999999964  578999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |+|+.+..    ........||+.|||||++.+..++.++||||+||++|||++|+.||.+..  ....  +... ....
T Consensus       171 G~a~~~~~----~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~--~~~~--~~~i-~~~~  241 (350)
T d1koaa2         171 GLTAHLDP----KQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN--DDET--LRNV-KSCD  241 (350)
T ss_dssp             TTCEECCT----TSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHH--HHHH-HHTC
T ss_pred             chheeccc----ccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCC--HHHH--HHHH-HhCC
Confidence            99987632    334456789999999999999999999999999999999999999997531  1111  1111 1000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..    .+   ..........+.+++.+|++.||++|||++|+++|
T Consensus       242 ~~----~~---~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         242 WN----MD---DSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             CC----SC---CGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             CC----CC---cccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            00    00   01112223456778889999999999999999997

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-47  Score=401.82  Aligned_cols=250  Identities=26%  Similarity=0.341  Sum_probs=200.7

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .+.|+..+.||+|+||+||+|.. .+|+.||||++.....       ......+.+.+|++++++++|||||++++++.+
T Consensus        14 ~~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-------~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~   86 (309)
T d1u5ra_          14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-------QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR   86 (309)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSS-------CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE
T ss_pred             HHhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhc-------cCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEE
Confidence            35689999999999999999964 5789999999854331       123445778999999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .+..++|||||++|++..++... ..+++.++..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|
T Consensus        87 ~~~~~iv~E~~~~g~l~~~~~~~-~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~~Kl~DFG~a  162 (309)
T d1u5ra_          87 EHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSA  162 (309)
T ss_dssp             TTEEEEEEECCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTC
T ss_pred             CCEEEEEEEecCCCchHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEECCCCCEEEeecccc
Confidence            99999999999999997766554 379999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCcccccc---CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYS---SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +....       .....||+.|||||++.+   +.|+.++|||||||++|||++|+.||.+..    ......... ...
T Consensus       163 ~~~~~-------~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~----~~~~~~~i~-~~~  230 (309)
T d1u5ra_         163 SIMAP-------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN----AMSALYHIA-QNE  230 (309)
T ss_dssp             BSSSS-------BCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHH-HSC
T ss_pred             cccCC-------CCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCC----HHHHHHHHH-hCC
Confidence            76532       234579999999999854   468999999999999999999999997531    111111100 000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            ........+   ...+.+++.+||+.||++|||++|+++|
T Consensus       231 ------~~~~~~~~~---s~~~~~li~~~L~~dP~~Rpt~~ell~H  267 (309)
T d1u5ra_         231 ------SPALQSGHW---SEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (309)
T ss_dssp             ------CCCCSCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             ------CCCCCCCCC---CHHHHHHHHHHCcCChhHCcCHHHHHhC
Confidence                  000011122   3456678889999999999999999875

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=4.1e-47  Score=405.62  Aligned_cols=252  Identities=21%  Similarity=0.311  Sum_probs=206.7

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .+.|+..+.||+|+||+||+|.. .+|+.||||++....          ....+.+.+|++++++++|||||++++++.+
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~----------~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~   97 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY----------PLDKYTVKNEISIMNQLHHPKLINLHDAFED   97 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----------HHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc----------hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE
Confidence            45788999999999999999965 579999999985432          1224568899999999999999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc--CCCCCeeeccc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD--VNYQPKVADFG  681 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~--~~~~~kl~Dfg  681 (840)
                      ....++|||||++|+|.+++......+++.++..|+.||+.||+|||+   ++||||||||+|||++  .++.+||+|||
T Consensus        98 ~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHRDiKp~NILl~~~~~~~vkL~DFG  174 (352)
T d1koba_          98 KYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFG  174 (352)
T ss_dssp             SSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCT
T ss_pred             CCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccccccccccccCCCeEEEeecc
Confidence            999999999999999999887766679999999999999999999999   9999999999999998  57899999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE  761 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  761 (840)
                      +|+.+..    ........||+.|+|||++.+..++.++||||+||++|||+||+.||.+...  ...  .... ...  
T Consensus       175 la~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~--~~~--~~~i-~~~--  243 (352)
T d1koba_         175 LATKLNP----DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LET--LQNV-KRC--  243 (352)
T ss_dssp             TCEECCT----TSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHH--HHHH-HHC--
T ss_pred             cceecCC----CCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH--HHH--HHHH-HhC--
Confidence            9987643    3344567899999999999999999999999999999999999999975311  111  0000 000  


Q ss_pred             chhhhcccccC-CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          762 GIMEVLDKKLS-GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       762 ~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            +.... ..+.....++.+++.+|++.||++|||++|+++|
T Consensus       244 ------~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~H  283 (352)
T d1koba_         244 ------DWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  283 (352)
T ss_dssp             ------CCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             ------CCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                  00111 1112234556778889999999999999999986

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-47  Score=397.08  Aligned_cols=258  Identities=24%  Similarity=0.324  Sum_probs=206.9

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +.+.|+..+.||+|+||+||+|.. .+|+.||||++.........    .....+.+.+|++++++++|||||++++++.
T Consensus         8 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~----~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~   83 (293)
T d1jksa_           8 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSR----RGVSREDIEREVSILKEIQHPNVITLHEVYE   83 (293)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCS----SSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             cccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhh----hhHHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            345789999999999999999966 57999999999654432211    1223567899999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC----CCeee
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY----QPKVA  678 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~  678 (840)
                      +....++|||||++|+|.+++.... .+++..+..++.|++.||+|||+   ++||||||||+||+++.++    .+|++
T Consensus        84 ~~~~~~iv~E~~~gg~L~~~i~~~~-~l~~~~~~~~~~qi~~al~yLH~---~~ivHrDiKp~Nill~~~~~~~~~vkl~  159 (293)
T d1jksa_          84 NKTDVILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKII  159 (293)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSSSSCCEEEC
T ss_pred             ECCEEEEEEEcCCCccccchhcccc-ccchhHHHHHHHHHHHHHHhhhh---cceeecccccceEEEecCCCcccceEec
Confidence            9999999999999999999998764 69999999999999999999999   9999999999999998776    48999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |||+|+....    ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+...  ..  .+... ..
T Consensus       160 DfG~a~~~~~----~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~--~~--~~~~i-~~  230 (293)
T d1jksa_         160 DFGLAHKIDF----GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QE--TLANV-SA  230 (293)
T ss_dssp             CCTTCEECTT----SCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HH--HHHHH-HT
T ss_pred             chhhhhhcCC----CccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCH--HH--HHHHH-Hh
Confidence            9999987633    2234456799999999999999999999999999999999999999975311  00  01000 00


Q ss_pred             cccchhhhcccccCCC-cHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          759 TKEGIMEVLDKKLSGS-FRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ..        ...... .......+.+++.+||+.||++|||++|++++
T Consensus       231 ~~--------~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  271 (293)
T d1jksa_         231 VN--------YEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  271 (293)
T ss_dssp             TC--------CCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             cC--------CCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            00        000000 01123456778889999999999999999985

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.9e-47  Score=396.62  Aligned_cols=258  Identities=26%  Similarity=0.366  Sum_probs=206.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|+..+.||+|+||+||+|.++      +++.||||++....         .....+.|.+|++++++++||||+++++
T Consensus        13 ~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~---------~~~~~~~~~~E~~il~~l~h~niv~~~~   83 (301)
T d1lufa_          13 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---------SADMQADFQREAALMAEFDNPNIVKLLG   83 (301)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---------CHHHHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             HHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc---------ChHHHHHHHHHHHHHHhcCCCCccccee
Confidence            46888899999999999999764      45789999984322         1234577999999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcCC-----------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCC
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKGL-----------------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSP  656 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~  656 (840)
                      +|.+....++||||+++|+|.+++....                       ..++|..+..|+.|++.||+|||+   ++
T Consensus        84 ~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~---~~  160 (301)
T d1lufa_          84 VCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RK  160 (301)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             eeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc---CC
Confidence            9999999999999999999999986431                       248999999999999999999999   99


Q ss_pred             eEecCCCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCC
Q 003199          657 IIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR  736 (840)
Q Consensus       657 ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~  736 (840)
                      ||||||||+|||++.++.+||+|||+|+...... .........||+.|+|||.+.+..++.++|||||||++|||++|.
T Consensus       161 ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~  239 (301)
T d1lufa_         161 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSAD-YYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYG  239 (301)
T ss_dssp             CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGG-CBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred             eEeeEEcccceEECCCCcEEEccchhheeccCCc-cccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccC
Confidence            9999999999999999999999999998775432 223344567899999999999999999999999999999999985


Q ss_pred             -CCCCCCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          737 -KPVEDDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       737 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                       +||....  .....             ..+.+....+.....+.++.+++.+||+.||++||||.||++.|+++.
T Consensus       240 ~~p~~~~~--~~e~~-------------~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         240 LQPYYGMA--HEEVI-------------YYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             CCTTTTSC--HHHHH-------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             CCCCCCCC--HHHHH-------------HHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence             5665421  11111             111111222222233456778899999999999999999999998763

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-47  Score=391.74  Aligned_cols=255  Identities=23%  Similarity=0.299  Sum_probs=194.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC----CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS----GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|...+.||+|+||+||+|.+..    +..||||++....         .....+.+.+|++++++++|||||++++++
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~---------~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~   77 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---------SDSVREKFLQEALTMRQFDHPHIVKLIGVI   77 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---------SHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecccc---------CHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            467888999999999999997642    3468888874322         123356799999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+ +..++||||+++|++.+++......+++..+..++.||++||+|||+   ++||||||||+||++++++.+||+|||
T Consensus        78 ~~-~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDlKp~NIll~~~~~~Kl~DfG  153 (273)
T d1mp8a_          78 TE-NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG  153 (273)
T ss_dssp             CS-SSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC--
T ss_pred             ec-CeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcc---cCeeccccchhheeecCCCcEEEccch
Confidence            64 67899999999999999888776679999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +|+.....  .........||+.|+|||++.+..++.++|||||||++|||+| |++||.+...  ......        
T Consensus       154 ~a~~~~~~--~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~--~~~~~~--------  221 (273)
T d1mp8a_         154 LSRYMEDS--TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVIGR--------  221 (273)
T ss_dssp             -------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHH--------
T ss_pred             hheeccCC--cceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCH--HHHHHH--------
Confidence            99876432  2233345678999999999999999999999999999999998 8999875321  111111        


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                           +......+........+.+++.+||+.||++|||+.||+++|+++
T Consensus       222 -----i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i  266 (273)
T d1mp8a_         222 -----IENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI  266 (273)
T ss_dssp             -----HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----HHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                 111111111122335677788899999999999999999999865

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-47  Score=389.13  Aligned_cols=249  Identities=26%  Similarity=0.359  Sum_probs=194.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec-C
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS-L  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~  604 (840)
                      ++|+..+.||+|+||.||+|.++ |+.||||+++...            ..+.|.+|++++++++||||++++|+|.+ .
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~------------~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~   73 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA------------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK   73 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC--------------HHHHHTHHHHTTCCCTTBCCEEEEECCC-
T ss_pred             HHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcHH------------HHHHHHHHHHHHHhCCCCCEeeEEEEEEecC
Confidence            45677889999999999999986 7899999985322            13568899999999999999999999854 4


Q ss_pred             ccceEEEeecCCCChHHHhhcCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGL-VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ...++||||+++|+|.+++.... ..++|..+..|+.||+.||+|||+   .+||||||||+||+++.++.+|++|||++
T Consensus        74 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s  150 (262)
T d1byga_          74 GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLT  150 (262)
T ss_dssp             -CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-
T ss_pred             CcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhcccccc---CceeccccchHhheecCCCCEeecccccc
Confidence            56799999999999999997642 358999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccccc
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTKEG  762 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  762 (840)
                      +....      ......+|..|+|||++.+..++.++|||||||++|||+| |+.||...  .......++.        
T Consensus       151 ~~~~~------~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~--~~~~~~~~i~--------  214 (262)
T d1byga_         151 KEASS------TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVE--------  214 (262)
T ss_dssp             -----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHT--------
T ss_pred             eecCC------CCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCC--CHHHHHHHHH--------
Confidence            86532      2234567899999999999999999999999999999998 78887643  1112221111        


Q ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          763 IMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                        .-.......   ....++.+++.+||+.||++||||.+++++|+++.
T Consensus       215 --~~~~~~~~~---~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~  258 (262)
T d1byga_         215 --KGYKMDAPD---GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK  258 (262)
T ss_dssp             --TTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --cCCCCCCCc---cCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence              001111222   22345677888999999999999999999998764

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-47  Score=392.82  Aligned_cols=260  Identities=27%  Similarity=0.375  Sum_probs=197.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC--CC--cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN--SG--EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||+||+|.+.  ++  ..||||++.....       ......+.|.+|++++++++|||||+++|++
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~-------~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~   80 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVL-------SQPEAMDDFIREVNAMHSLDHRNLIRLYGVV   80 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---------------CHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhc-------CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            46788899999999999999653  23  3789998744321       1223456799999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+ ...++||||+++|++.+++......+++..+..++.|+|.||+|||+   ++|+||||||+||+++.++.+||+|||
T Consensus        81 ~~-~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDikp~NIll~~~~~vkl~DfG  156 (273)
T d1u46a_          81 LT-PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFG  156 (273)
T ss_dssp             CS-SSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCT
T ss_pred             ee-cchheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhh---CCEeeeeecHHHhccccccceeeccch
Confidence            76 46789999999999999887766679999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +++................||..|+|||.+.+..++.++|||||||++|||+| |+.||.+..  ......++   ... 
T Consensus       157 l~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~--~~~~~~~i---~~~-  230 (273)
T d1u46a_         157 LMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN--GSQILHKI---DKE-  230 (273)
T ss_dssp             TCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHH---HTS-
T ss_pred             hhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcC--HHHHHHHH---HhC-
Confidence            99877543333333445668889999999999999999999999999999998 899997531  11111111   000 


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                              ....+........+.+++.+||+.||++||||.||++.|+++
T Consensus       231 --------~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         231 --------GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             --------CCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             --------CCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence                    000111122334677888899999999999999999999875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-46  Score=397.96  Aligned_cols=255  Identities=24%  Similarity=0.343  Sum_probs=198.7

Q ss_pred             hcCccCeeeccCCcEEEEEEeC-CCc----EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEE
Q 003199          527 AMTEKNKVGQGGSGTVYKIDLN-SGE----VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYF  601 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  601 (840)
                      +|+..+.||+|+||+||+|.+. +|+    +||||++....         ..+..+.|.+|++++++++|||||+++|+|
T Consensus        10 dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~   80 (317)
T d1xkka_          10 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---------SPKANKEILDEAYVMASVDNPHVCRLLGIC   80 (317)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-------------CTHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             HCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEecccc---------CHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            5788899999999999999664 454    58888774322         123456799999999999999999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeeccc
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFG  681 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg  681 (840)
                      .+. ..++++||+.+|+|.+++......+++..+..++.|||.||+|||+   ++||||||||+|||++.++.+||+|||
T Consensus        81 ~~~-~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~~~kl~DFG  156 (317)
T d1xkka_          81 LTS-TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFG  156 (317)
T ss_dssp             ESS-SEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCCS
T ss_pred             ecC-CeeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCCCeEeeccc
Confidence            875 5678899999999999998877789999999999999999999999   999999999999999999999999999


Q ss_pred             chhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          682 IAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       682 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      +|+..... ..........||+.|+|||++.++.++.++|||||||++|||+| |+.||.+...  ......+.      
T Consensus       157 la~~~~~~-~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~--~~~~~~i~------  227 (317)
T d1xkka_         157 LAKLLGAE-EKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILE------  227 (317)
T ss_dssp             HHHHTTTT-CC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCG--GGHHHHHH------
T ss_pred             cceecccc-cccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCH--HHHHHHHH------
Confidence            99887542 22223344568999999999999999999999999999999998 8889875311  11111000      


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                             .....+........+.+++.+||+.||++|||+.|++++|+.+
T Consensus       228 -------~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~  270 (317)
T d1xkka_         228 -------KGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM  270 (317)
T ss_dssp             -------HTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -------cCCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHH
Confidence                   0010111122334577788899999999999999999998765

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-46  Score=396.86  Aligned_cols=251  Identities=24%  Similarity=0.298  Sum_probs=205.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++......       .....+.+.+|+.++++++||||+++++++.+.
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~-------~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~   77 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVII-------AKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH   77 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH-------HTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhcc-------CHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccc
Confidence            5688899999999999999965 58999999998543211       122356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++|+|.+++.+.. .+++..++.++.|++.||+|||+   ++||||||||+|||++++|.+||+|||+|+
T Consensus        78 ~~~~iv~ey~~gg~L~~~~~~~~-~~~e~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NILl~~~g~vkl~DFG~a~  153 (337)
T d1o6la_          78 DRLCFVMEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCK  153 (337)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             cccccceeccCCCchhhhhhccc-CCcHHHHHHHHHHHhhhhhhhhh---cCccccccCHHHeEecCCCCEEEeeccccc
Confidence            99999999999999999998765 68999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....   ........+||+.|+|||++.+..++.++||||+||++|||++|+.||.+...  .   .........     
T Consensus       154 ~~~~---~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~--~---~~~~~i~~~-----  220 (337)
T d1o6la_         154 EGIS---DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--E---RLFELILME-----  220 (337)
T ss_dssp             CSCC---TTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--H---HHHHHHHHC-----
T ss_pred             cccc---CCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCH--H---HHHHHHhcC-----
Confidence            6532   22234457899999999999999999999999999999999999999976311  1   111110000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~  806 (840)
                         ...++..+   ..++.+++.+|+++||++||+     +.|+++|
T Consensus       221 ---~~~~p~~~---s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~H  261 (337)
T d1o6la_         221 ---EIRFPRTL---SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             ---CCCCCTTS---CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             ---CCCCCccC---CHHHHHHHHhhccCCchhhcccccccHHHHHcC
Confidence               11122222   345667888999999999995     8899886

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-46  Score=392.46  Aligned_cols=248  Identities=26%  Similarity=0.374  Sum_probs=203.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....       ......+.+.+|+.++++++|||||++++++.+.
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~-------~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   76 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIV-------VRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA   76 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHc-------cCHHHHHHHHHHHHHHHhccCcChhheeeeEeeC
Confidence            5688899999999999999965 5799999999853321       1122356788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+++|++..++.... .+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+
T Consensus        77 ~~~~ivmE~~~gg~l~~~~~~~~-~~~~~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NILl~~~g~vkL~DFG~a~  152 (316)
T d1fota_          77 QQIFMIMDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAK  152 (316)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCE
T ss_pred             CeeeeEeeecCCccccccccccc-cccccHHHHHHHHHHHhhhhhcc---CcEEccccCchheeEcCCCCEEEecCccce
Confidence            99999999999999999888765 68899999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....      ......||+.|||||++.+..++.++||||+||++|||++|+.||.+..     ...........     
T Consensus       153 ~~~~------~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~-----~~~~~~~i~~~-----  216 (316)
T d1fota_         153 YVPD------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN-----TMKTYEKILNA-----  216 (316)
T ss_dssp             ECSS------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS-----HHHHHHHHHHC-----
T ss_pred             Eecc------ccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcC-----HHHHHHHHHcC-----
Confidence            7532      2335689999999999999999999999999999999999999997531     11111100000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                         ....++..   ..++.+++.+|++.||.+||     |++++++|
T Consensus       217 ---~~~~p~~~---s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~H  257 (316)
T d1fota_         217 ---ELRFPPFF---NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  257 (316)
T ss_dssp             ---CCCCCTTS---CHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ---CCCCCCCC---CHHHHHHHHHHhhhCHHhccccchhhHHHHHcC
Confidence               01112222   24466788899999999996     89999876

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=5.2e-46  Score=383.81  Aligned_cols=260  Identities=26%  Similarity=0.317  Sum_probs=207.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~  603 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++........ .........+.+.+|+.++++++ ||||+++++++.+
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~-~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSF-SAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTC-CHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccch-hHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            5788899999999999999965 5799999999865543211 12223445577899999999997 9999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      .+..++||||+++|+|.+++.... .+++.+++.++.||++||+|||+   ++||||||||+|||++.++.+||+|||+|
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a  157 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFS  157 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             CcceEEEEEcCCCchHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---cCCcccccccceEEEcCCCCeEEccchhe
Confidence            999999999999999999997765 79999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCcccccc------CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYS------SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      +....    ........||+.|+|||.+.+      ..++.++||||+||++|||++|+.||.+..   ... .... ..
T Consensus       158 ~~~~~----~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~---~~~-~~~~-i~  228 (277)
T d1phka_         158 CQLDP----GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK---QML-MLRM-IM  228 (277)
T ss_dssp             EECCT----TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHH-HHHH-HH
T ss_pred             eEccC----CCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCC---HHH-HHHH-HH
Confidence            87643    223345679999999998853      357889999999999999999999997531   111 0000 01


Q ss_pred             ccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          758 DTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ....       ....+.......++.+++.+|++.||++|||++|++++
T Consensus       229 ~~~~-------~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h  270 (277)
T d1phka_         229 SGNY-------QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  270 (277)
T ss_dssp             HTCC-------CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             hCCC-------CCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            0000       00111222344567788889999999999999999876

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-46  Score=391.79  Aligned_cols=272  Identities=25%  Similarity=0.274  Sum_probs=199.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      +.|...+.||+|+||.||+|.+. |+.||||++....           .....+..|+..+..++|||||++++++.+.+
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~~-g~~vAvK~~~~~~-----------~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~   70 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-----------ERSWFREAEIYQTVMLRHENILGFIAADNKDN   70 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET-TEEEEEEEECGGG-----------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC
T ss_pred             cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccc-----------hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCC
Confidence            45777889999999999999875 8999999984321           11122334666667889999999999997643


Q ss_pred             ----cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhc-----CCCCeEecCCCCCCEEEcCCCCCe
Q 003199          606 ----CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHG-----LLSPIIHRDIKSTNILLDVNYQPK  676 (840)
Q Consensus       606 ----~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~Dlk~~Nill~~~~~~k  676 (840)
                          ..++||||+++|+|.+++++.  .++|..+..++.|+|.||+|+|+.     +.++||||||||+|||++.++.+|
T Consensus        71 ~~~~~~~lv~Ey~~~g~L~~~l~~~--~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~K  148 (303)
T d1vjya_          71 GTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCC  148 (303)
T ss_dssp             SSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEE
T ss_pred             CcceEEEEEEecccCCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeE
Confidence                568999999999999999875  589999999999999999999963     126999999999999999999999


Q ss_pred             eecccchhhhhccCCC-CcceecccccccccCccccccCC------CCccccchhHHHHHHHHHhCCCCCCCCCCCCcch
Q 003199          677 VADFGIAKVLQARGGK-DSTTTVIAGTYGYLAPEYAYSSK------ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI  749 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~  749 (840)
                      |+|||+++........ ........||+.|+|||++.+..      ++.++|||||||++|||+||..||..........
T Consensus       149 l~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~  228 (303)
T d1vjya_         149 IADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY  228 (303)
T ss_dssp             ECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTT
T ss_pred             EEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccch
Confidence            9999999876442211 12334567999999999986542      5779999999999999999998875432211111


Q ss_pred             hhhhhhhhccccchhhhcc----cccCCCc--HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcC
Q 003199          750 IYWVSIKVDTKEGIMEVLD----KKLSGSF--RDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEAD  811 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~  811 (840)
                      ..................+    +.++..+  .+....+.+++.+||+.||++|||+.||+++|+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~  296 (303)
T d1vjya_         229 YDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS  296 (303)
T ss_dssp             TTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred             hhcccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence            1000000000000011112    2222221  245567889999999999999999999999998754

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-46  Score=388.92  Aligned_cols=257  Identities=25%  Similarity=0.322  Sum_probs=202.5

Q ss_pred             cCeeeccCCcEEEEEEeCCC----cEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec-Cc
Q 003199          531 KNKVGQGGSGTVYKIDLNSG----EVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS-LY  605 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~  605 (840)
                      .++||+|+||+||+|.+.++    ..||||++....         .....+.|.+|++++++++||||++++|++.+ +.
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~---------~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~  102 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---------DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG  102 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCC---------CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTT
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECccc---------CHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCC
Confidence            45799999999999976532    368999984321         13345789999999999999999999999865 55


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++||||+++|+|.+++.......++..+..++.|+++||.|+|+   ++|+||||||+|||+++++.+||+|||+++.
T Consensus       103 ~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~  179 (311)
T d1r0pa_         103 SPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARD  179 (311)
T ss_dssp             EEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCC
T ss_pred             ceEEEEEEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcc---cCcccCCccHHhEeECCCCCEEEecccchhh
Confidence            7899999999999999998877778899999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCC-CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          686 LQARGGK-DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       686 ~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      ....... ........||+.|+|||.+.+..++.++||||||+++|||+||+.||...... .....++   .....   
T Consensus       180 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~-~~~~~~i---~~g~~---  252 (311)
T d1r0pa_         180 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-FDITVYL---LQGRR---  252 (311)
T ss_dssp             TTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------CHHHH---HTTCC---
T ss_pred             ccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCH-HHHHHHH---HcCCC---
Confidence            6543222 12233457899999999999999999999999999999999988887643211 1111111   11110   


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCC
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPC  813 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~  813 (840)
                          ...+.   .....+.+++.+||+.||++||+|.||+++|+++...
T Consensus       253 ----~~~p~---~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         253 ----LLQPE---YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             ----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ----CCCcc---cCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence                11111   2234577888899999999999999999999987543

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.9e-46  Score=386.54  Aligned_cols=262  Identities=25%  Similarity=0.327  Sum_probs=199.2

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....       ......+.+.+|+++++.++||||+++++++...
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-------~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~   79 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLA-------RDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAE   79 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTT-------TCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhc-------cCHHHHHHHHHHHHHHHhcCCCCCCcccceeeec
Confidence            5688899999999999999964 5899999999854321       1234456799999999999999999999998764


Q ss_pred             c----cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          605 Y----CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       605 ~----~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      .    ..|+||||+++|+|.+++.... .+++.++..++.||+.||+|||+   ++||||||||+|||++.++..+++||
T Consensus        80 ~~~~~~~~lvmE~~~g~~L~~~~~~~~-~l~~~~~~~i~~qi~~al~~lH~---~~iiHrDiKP~NIll~~~~~~~l~d~  155 (277)
T d1o6ya_          80 TPAGPLPYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDF  155 (277)
T ss_dssp             CSSSEEEEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTSCEEECCC
T ss_pred             cCCCceEEEEEECCCCCEehhhhcccC-CCCHHHHHHHHHHHHHHHHHHHh---CCccCccccCcccccCccccceeehh
Confidence            4    3789999999999999887765 69999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |.+.................||+.|+|||++.+..++.++||||+||++|||+||+.||.+..   . . ..........
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~---~-~-~~~~~~~~~~  230 (277)
T d1o6ya_         156 GIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS---P-V-SVAYQHVRED  230 (277)
T ss_dssp             TTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS---H-H-HHHHHHHHCC
T ss_pred             hhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcC---H-H-HHHHHHHhcC
Confidence            998765433333344556789999999999999999999999999999999999999997531   1 1 1110011100


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHhhhc
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-TMNEVVQLLAEA  810 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-s~~evl~~L~~~  810 (840)
                      ..    ........   ...++.+++.+|+++||++|| |++++.+.|.++
T Consensus       231 ~~----~~~~~~~~---~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~  274 (277)
T d1o6ya_         231 PI----PPSARHEG---LSADLDAVVLKALAKNPENRYQTAAEMRADLVRV  274 (277)
T ss_dssp             CC----CGGGTSSS---CCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             CC----CCchhccC---CCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHH
Confidence            00    00011112   234566788899999999999 899999988765

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-45  Score=389.13  Aligned_cols=267  Identities=23%  Similarity=0.303  Sum_probs=211.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYC  599 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~  599 (840)
                      ++|+..+.||+|+||+||+|.+.      +++.||||++....         ..+....|.+|++++++++|||||++++
T Consensus        20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~---------~~~~~~~~~~E~~il~~l~h~nIv~~~~   90 (308)
T d1p4oa_          20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---------SMRERIEFLNEASVMKEFNCHHVVRLLG   90 (308)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---------CHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc---------ChHHHHHHHHHHHHHHHcCCCCEeeeee
Confidence            57788899999999999999663      35789999984322         1233567899999999999999999999


Q ss_pred             EEecCccceEEEeecCCCChHHHhhcC---------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc
Q 003199          600 YFSSLYCNLLVYEYMPNGNLWDALHKG---------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD  670 (840)
Q Consensus       600 ~~~~~~~~~lV~e~~~~gsL~~~l~~~---------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~  670 (840)
                      ++......++||||+++|+|.+++...         ...+++..+..++.|+|+||.|||+   ++||||||||+|||++
T Consensus        91 ~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~ivHrDlk~~NiLld  167 (308)
T d1p4oa_          91 VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVA  167 (308)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEEC
T ss_pred             EEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeeceEcCCceeec
Confidence            999999999999999999999988643         1357899999999999999999999   9999999999999999


Q ss_pred             CCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCC-CCCCCCCCCCcch
Q 003199          671 VNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR-KPVEDDFGDNKNI  749 (840)
Q Consensus       671 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~-~p~~~~~~~~~~~  749 (840)
                      +++++||+|||+|+...... .........||+.|+|||.+.+..++.++||||||+++|||+||. .||.+.     ..
T Consensus       168 ~~~~~Kl~DFGla~~~~~~~-~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~-----~~  241 (308)
T d1p4oa_         168 EDFTVKIGDFGMTRDIYETD-YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-----SN  241 (308)
T ss_dssp             TTCCEEECCTTCCCGGGGGG-CEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-----CH
T ss_pred             CCceEEEeecccceeccCCc-ceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCC-----CH
Confidence            99999999999998775432 222334456899999999999999999999999999999999984 676542     11


Q ss_pred             hhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCCCCCCCCCC
Q 003199          750 IYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADPCRFESCKF  820 (840)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~~~~~~~~~  820 (840)
                      ..+..          .+.+....+........+.+++.+||+.||++||||.+|+++|++.....+...+|
T Consensus       242 ~~~~~----------~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~~~~  302 (308)
T d1p4oa_         242 EQVLR----------FVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF  302 (308)
T ss_dssp             HHHHH----------HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHHHCS
T ss_pred             HHHHH----------HHHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCcCCCC
Confidence            11111          11111221112223356778888999999999999999999998876555544443

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-46  Score=392.24  Aligned_cols=253  Identities=21%  Similarity=0.315  Sum_probs=204.3

Q ss_pred             HHHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEe
Q 003199          524 ILEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFS  602 (840)
Q Consensus       524 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  602 (840)
                      +.++|+..+.||+|+||+||+|.. .+|+.||||++....           .....+.+|+++++.++|||||++++++.
T Consensus         3 ~~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-----------~~~~~~~~Ei~il~~l~HpnIv~~~~~~~   71 (321)
T d1tkia_           3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-----------TDQVLVKKEISILNIARHRNILHLHESFE   71 (321)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-----------HHHHHHHHHHHHHHHSCCTTBCCEEEEEE
T ss_pred             CccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-----------ccHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence            456789999999999999999965 478999999985432           11345789999999999999999999999


Q ss_pred             cCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCC--CCCeeecc
Q 003199          603 SLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVN--YQPKVADF  680 (840)
Q Consensus       603 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~--~~~kl~Df  680 (840)
                      +....|+|||||++|+|.+++......+++.++..++.||+.||+|||+   ++|+||||||+|||++.+  ..+||+||
T Consensus        72 ~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~---~~iiHrDlKp~NIll~~~~~~~ikl~DF  148 (321)
T d1tkia_          72 SMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEF  148 (321)
T ss_dssp             ETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCC
T ss_pred             ECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccccceeecCCCceEEEEccc
Confidence            9999999999999999999998776579999999999999999999999   999999999999999854  47899999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTK  760 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  760 (840)
                      |+++...    .........||+.|+|||...+..++.++||||+||++|||++|+.||.+...    . ..........
T Consensus       149 G~~~~~~----~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~----~-~~~~~i~~~~  219 (321)
T d1tkia_         149 GQARQLK----PGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN----Q-QIIENIMNAE  219 (321)
T ss_dssp             TTCEECC----TTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH----H-HHHHHHHHTC
T ss_pred             chhhccc----cCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCH----H-HHHHHHHhCC
Confidence            9997653    23344556799999999999999999999999999999999999999975311    0 0111001000


Q ss_pred             cchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          761 EGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...    +...   +.....++.+++.+|+..||++|||++|+++|
T Consensus       220 ~~~----~~~~---~~~~s~~~~~li~~~L~~dp~~R~s~~eil~h  258 (321)
T d1tkia_         220 YTF----DEEA---FKEISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             CCC----CHHH---HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCC----Chhh---ccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            000    0000   01123456778889999999999999999985

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-45  Score=393.68  Aligned_cols=248  Identities=24%  Similarity=0.292  Sum_probs=203.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....       ......+.+.+|+++++.++|||||++++++.+.
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~-------~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~  113 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKV-------VKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN  113 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-------HHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHc-------cCHHHHHHHHHHHHHHHHcCCCcEeecccccccc
Confidence            4788899999999999999965 5799999999853221       1122346788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+.+|+|.+++.... .+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+
T Consensus       114 ~~~~~v~e~~~~g~l~~~l~~~~-~l~e~~~~~i~~qi~~aL~yLH~---~~iiHRDIKP~NILl~~~g~ikL~DFG~a~  189 (350)
T d1rdqe_         114 SNLYMVMEYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAK  189 (350)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cccccccccccccchhhhHhhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCEecCcCCHHHcccCCCCCEEeeeceeee
Confidence            99999999999999999998765 69999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccchh
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGIM  764 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                      .+..      ......||+.|||||++.+..++.++|||||||++|||+||+.||.+..    .. .........     
T Consensus       190 ~~~~------~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~----~~-~~~~~i~~~-----  253 (350)
T d1rdqe_         190 RVKG------RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ----PI-QIYEKIVSG-----  253 (350)
T ss_dssp             ECSS------CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HH-HHHHHHHHC-----
T ss_pred             eccc------ccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcC----HH-HHHHHHhcC-----
Confidence            7632      2335679999999999999999999999999999999999999997531    11 111100000     


Q ss_pred             hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          765 EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       765 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                         ....+..   ...++.+++.+|++.||.+|+     |++|+++|
T Consensus       254 ---~~~~p~~---~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~H  294 (350)
T d1rdqe_         254 ---KVRFPSH---FSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             ---CCCCCTT---CCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ---CCCCCcc---CCHHHHHHHHHHhhhCHHhccccccccHHHHHcC
Confidence               0111122   234566788899999999994     89999875

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-45  Score=395.76  Aligned_cols=255  Identities=22%  Similarity=0.293  Sum_probs=199.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.......    ............|+++++.++|||||++++++.+.
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~----~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~   79 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM----KQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP   79 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH----HTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcch----hhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEEC
Confidence            4688889999999999999965 479999999985332110    00111122334457788888999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +..++||||+++|+|.+++.... .+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+||+|||+|+
T Consensus        80 ~~~~ivmE~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~aL~ylH~---~~iiHrDlKP~NILl~~~g~iKl~DFGla~  155 (364)
T d1omwa3          80 DKLSFILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLAC  155 (364)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSSSCEEECCCTTCE
T ss_pred             CEEEEEEEecCCCcHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHH---CCccceeeccceeEEcCCCcEEEeeeceee
Confidence            99999999999999999998764 68999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      .+..     .......||+.|+|||++.. ..++.++|||||||++|||+||+.||.+......  .........     
T Consensus       156 ~~~~-----~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~--~~~~~~~~~-----  223 (364)
T d1omwa3         156 DFSK-----KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK--HEIDRMTLT-----  223 (364)
T ss_dssp             ECSS-----SCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCH--HHHHHHSSS-----
T ss_pred             ecCC-----CcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhccc-----
Confidence            6533     22345679999999999865 5689999999999999999999999976422211  111100000     


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPT-----MNEVVQL  806 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~evl~~  806 (840)
                         .....+..+   ..++.+++.+||+.||++|||     ++|+++|
T Consensus       224 ---~~~~~~~~~---s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~H  265 (364)
T d1omwa3         224 ---MAVELPDSF---SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  265 (364)
T ss_dssp             ---CCCCCCSSS---CHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTS
T ss_pred             ---CCCCCCCCC---CHHHHHHHHHHcccCHHHhCCCcccCHHHHHcC
Confidence               011112222   345677888999999999999     7999876

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-45  Score=388.11  Aligned_cols=256  Identities=26%  Similarity=0.339  Sum_probs=199.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC-CCc--EEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeEE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN-SGE--VVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCYF  601 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  601 (840)
                      ++|+..+.||+|+||+||+|.++ +|.  .||||++.....         ....+.|.+|+++++++ +|||||+++++|
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~   80 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS---------KDDHRDFAGELEVLCKLGHHPNIINLLGAC   80 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------------CHHHHHHHHHTTCCCCTTBCCEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccC---------hHHHHHHHHHHHHHHhccCCCCEeeEEEEE
Confidence            56777889999999999999665 454  477787643221         12345689999999999 799999999999


Q ss_pred             ecCccceEEEeecCCCChHHHhhcC---------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCC
Q 003199          602 SSLYCNLLVYEYMPNGNLWDALHKG---------------LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTN  666 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~N  666 (840)
                      .+.+..++||||+++|+|.++++..               ...++|..+..++.|||.||.|+|+   ++||||||||+|
T Consensus        81 ~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~---~~iiHrDlkp~N  157 (309)
T d1fvra_          81 EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARN  157 (309)
T ss_dssp             EETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGG
T ss_pred             ecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc---CCccccccccce
Confidence            9999999999999999999999754               2468999999999999999999999   999999999999


Q ss_pred             EEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCC-CCCCCCCCC
Q 003199          667 ILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGR-KPVEDDFGD  745 (840)
Q Consensus       667 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~-~p~~~~~~~  745 (840)
                      ||++.++.+||+|||+|+....    ........||..|+|||.+.+..++.++|||||||++|||++|. +||.+..  
T Consensus       158 IL~~~~~~~kl~DfG~a~~~~~----~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~--  231 (309)
T d1fvra_         158 ILVGENYVAKIADFGLSRGQEV----YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT--  231 (309)
T ss_dssp             EEECGGGCEEECCTTCEESSCE----ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--
T ss_pred             EEEcCCCceEEccccccccccc----cccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCC--
Confidence            9999999999999999976533    22223456899999999999999999999999999999999975 4665421  


Q ss_pred             CcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhcCC
Q 003199          746 NKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEADP  812 (840)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~~~  812 (840)
                      .......             +..............++.+++.+||+.||++||||+||+++|+++..
T Consensus       232 ~~~~~~~-------------i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~  285 (309)
T d1fvra_         232 CAELYEK-------------LPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE  285 (309)
T ss_dssp             HHHHHHH-------------GGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-------------HHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            1111110             11111111112233567778889999999999999999999987653

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-45  Score=386.22  Aligned_cols=258  Identities=25%  Similarity=0.328  Sum_probs=193.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEeC------CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLN------SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|+..+.||+|+||+||+|...      +++.||||++.....         ....+.+.+|+.++.++ +|+||+.++
T Consensus        13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~---------~~~~~~~~~e~~~l~~~~~h~~iv~~~   83 (299)
T d1ywna1          13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---------HSEHRALMSELKILIHIGHHLNVVNLL   83 (299)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----C---------HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---------cHHHHHHHHHHHHHHhhcCCCeEEEee
Confidence            56888999999999999999653      346899999853221         23345677888888877 689999999


Q ss_pred             eEEecC-ccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCC
Q 003199          599 CYFSSL-YCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDI  662 (840)
Q Consensus       599 ~~~~~~-~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl  662 (840)
                      +++.+. ...++||||+++|+|.+++....               ..++|.++..++.||++||+|||+   ++||||||
T Consensus        84 ~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~ivHrDl  160 (299)
T d1ywna1          84 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDL  160 (299)
T ss_dssp             EEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCC
T ss_pred             eeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh---CCCcCCcC
Confidence            988654 46799999999999999997532               248899999999999999999999   99999999


Q ss_pred             CCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhC-CCCCCC
Q 003199          663 KSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITG-RKPVED  741 (840)
Q Consensus       663 k~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg-~~p~~~  741 (840)
                      ||+|||+++++.+||+|||+|+..... ..........||+.|+|||++.+..++.++|||||||++|||+|| ..||..
T Consensus       161 Kp~NILl~~~~~~Kl~DFGla~~~~~~-~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~  239 (299)
T d1ywna1         161 AARNILLSEKNVVKICDFGLARDIYKD-PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG  239 (299)
T ss_dssp             CGGGEEECGGGCEEECC------CCSC-TTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             CccceeECCCCcEEEccCcchhhcccc-ccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999876432 122233456799999999999999999999999999999999996 567764


Q ss_pred             CCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          742 DFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ... .......    ..      .-.....+.   ....++.+++.+||+.||++|||++|++++|+++
T Consensus       240 ~~~-~~~~~~~----~~------~~~~~~~~~---~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~i  294 (299)
T d1ywna1         240 VKI-DEEFCRR----LK------EGTRMRAPD---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  294 (299)
T ss_dssp             CCC-SHHHHHH----HH------HTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCH-HHHHHHH----Hh------cCCCCCCCc---cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            311 1111110    00      000111112   2234577888899999999999999999999865

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-45  Score=384.05  Aligned_cols=257  Identities=27%  Similarity=0.340  Sum_probs=201.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCC--------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcce
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNS--------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVK  596 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~  596 (840)
                      ++|...+.||+|+||.||+|...+        +..||||++.....         ......+.+|+..+.++ +|||||+
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~---------~~~~~~~~~e~~~l~~~~~HpnIv~   83 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT---------EKDLSDLISEMEMMKMIGKHKNIIN   83 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCC---------HHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccC---------hHHHHHHHHHHHHHHHhcCCCeEEe
Confidence            467788899999999999996532        24799999854321         23356788899999888 7999999


Q ss_pred             eeeEEecCccceEEEeecCCCChHHHhhcCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          597 LYCYFSSLYCNLLVYEYMPNGNLWDALHKGL---------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       597 l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      ++++|.+....++||||+++|+|.+++....               ..+++.++..++.|++.||+|||+   ++|||||
T Consensus        84 ~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~---~~ivHrD  160 (299)
T d1fgka_          84 LLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRD  160 (299)
T ss_dssp             EEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             cccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh---CCEEeee
Confidence            9999999999999999999999999997542               358999999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+|||++.++.+||+|||+++...... .........||+.|+|||.+.++.++.++|||||||++|||++ |+.||.
T Consensus       161 iKp~NiLl~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~  239 (299)
T d1fgka_         161 LAARNVLVTEDNVMKIADFGLARDIHHID-YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  239 (299)
T ss_dssp             CSGGGEEECTTCCEEECSTTCCCCGGGCC-TTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ecccceeecCCCCeEeccchhhccccccc-cccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCC
Confidence            99999999999999999999998775532 2233455678999999999999999999999999999999998 788886


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      +...  ......    .      ........+..   ....+.+++.+||+.||++|||+.||++.|+++
T Consensus       240 ~~~~--~~~~~~----i------~~~~~~~~p~~---~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i  294 (299)
T d1fgka_         240 GVPV--EELFKL----L------KEGHRMDKPSN---CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  294 (299)
T ss_dssp             TCCH--HHHHHH----H------HTTCCCCCCSS---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCH--HHHHHH----H------HcCCCCCCCcc---chHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence            4311  111111    0      00011111222   234577888899999999999999999999875

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-45  Score=389.67  Aligned_cols=252  Identities=24%  Similarity=0.330  Sum_probs=196.9

Q ss_pred             HHHhcCccC-eeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceeeeE
Q 003199          524 ILEAMTEKN-KVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLYCY  600 (840)
Q Consensus       524 ~~~~~~~~~-~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~  600 (840)
                      +.++|.... .||+|+||+||+|.. .+|+.||||++..               .+.+.+|++++.++ +|||||+++++
T Consensus         9 i~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~---------------~~~~~~E~~~~~~~~~hpnIv~l~~~   73 (335)
T d2ozaa1           9 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------------CPKARREVELHWRASQCPHIVRIVDV   73 (335)
T ss_dssp             GGGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC---------------SHHHHHHHHHHHHHTTSTTBCCEEEE
T ss_pred             cccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC---------------cHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence            346787764 599999999999955 6799999999832               13466799887655 89999999999


Q ss_pred             Eec----CccceEEEeecCCCChHHHhhcC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC---C
Q 003199          601 FSS----LYCNLLVYEYMPNGNLWDALHKG-LVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV---N  672 (840)
Q Consensus       601 ~~~----~~~~~lV~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~  672 (840)
                      +.+    ....|+|||||++|+|.+++... ...+++.++..|+.||+.||+|||+   ++|+||||||+|||++.   +
T Consensus        74 ~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~---~~iiHRDiKp~NIll~~~~~~  150 (335)
T d2ozaa1          74 YENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPN  150 (335)
T ss_dssp             EEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSTT
T ss_pred             EeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHH---cCCcccccccccccccccccc
Confidence            865    45679999999999999999764 3469999999999999999999999   99999999999999985   5


Q ss_pred             CCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhh
Q 003199          673 YQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYW  752 (840)
Q Consensus       673 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~  752 (840)
                      +.+||+|||+|+....    ........||+.|||||++.+..|+.++||||+||++|||+||+.||.+.......  ..
T Consensus       151 ~~~Kl~DFG~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~--~~  224 (335)
T d2ozaa1         151 AILKLTDFGFAKETTS----HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS--PG  224 (335)
T ss_dssp             CCEEECCCTTCEECCC----CCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC-------
T ss_pred             ccccccccceeeeccC----CCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHH--HH
Confidence            5799999999987643    22334567999999999999999999999999999999999999999754221110  00


Q ss_pred             hhhhhccccchhhhcccccC-CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          753 VSIKVDTKEGIMEVLDKKLS-GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .....  ..     .....+ ........++.+++.+|++.||++|||+.|+++|
T Consensus       225 ~~~~i--~~-----~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         225 MKTRI--RM-----GQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             ---CC--CS-----CSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHH--hc-----CCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            00000  00     000011 1122345667888999999999999999999986

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-45  Score=382.80  Aligned_cols=266  Identities=25%  Similarity=0.304  Sum_probs=199.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++......        ....+.+.+|++++++++|||||++++++.+.
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~--------~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~   73 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET--------EGVPSTAIREISLLKELNHPNIVKLLDVIHTE   73 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC---------------CCHHHHHHHHHHTTCCCTTBCCEEEEEEET
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcC--------hHHHHHHHHHHHHHHhCCCCcEEEeccccccc
Confidence            5788899999999999999965 67999999998543211        12246788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||||+.++.+..........+++..+..++.|++.||+|||+   ++||||||||+|||++.++.+||+|||.|+
T Consensus        74 ~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~---~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~  150 (298)
T d1gz8a_          74 NKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR  150 (298)
T ss_dssp             TEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTHHH
T ss_pred             cceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhc---CCEEccccCchheeecccCcceeccCCcce
Confidence            99999999997654444444445579999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCC-CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcccc-c
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKE-G  762 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-~  762 (840)
                      ....   .........||+.|+|||.+.... ++.++||||+||++|||++|+.||.+..... .............+ .
T Consensus       151 ~~~~---~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~-~~~~i~~~~~~~~~~~  226 (298)
T d1gz8a_         151 AFGV---PVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID-QLFRIFRTLGTPDEVV  226 (298)
T ss_dssp             HHCC---CSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTT
T ss_pred             eccC---CcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHH-HHHHHHHhcCCCchhh
Confidence            7643   223344567999999999876655 5889999999999999999999997532100 00000000000000 0


Q ss_pred             h---------hhhcccccCCCcH----HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 I---------MEVLDKKLSGSFR----DEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~---------~~~~~~~~~~~~~----~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .         .............    ....++.+++.+|++.||++|||+.|+++|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         227 WPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             STTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            0         0000000111111    223567788999999999999999999986

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-45  Score=388.00  Aligned_cols=250  Identities=25%  Similarity=0.387  Sum_probs=199.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHh-ccCCCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLG-NIRHKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~  603 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++......       .....+.+..|+.++. .++|||||++++++.+
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~-------~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~   74 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVL-------MDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT   74 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHH-------HTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhcc-------ChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEcc
Confidence            4688899999999999999965 47999999998532211       1122345556666654 6899999999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccch
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIA  683 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a  683 (840)
                      ....|+||||+++|+|.+++.... .+++.++..++.||+.||+|||+   ++|+||||||+|||+++++.+||+|||+|
T Consensus        75 ~~~~yivmEy~~~g~L~~~i~~~~-~~~e~~~~~~~~qi~~al~ylH~---~~iiHrDikp~NiL~~~~~~~kl~DFG~a  150 (320)
T d1xjda_          75 KENLFFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMC  150 (320)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             CCceeEEEeecCCCcHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCcccceeecCCCceeccccchh
Confidence            999999999999999999998765 68999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhccccch
Q 003199          684 KVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDTKEGI  763 (840)
Q Consensus       684 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  763 (840)
                      +....   .........||+.|+|||++.+..++.++||||+||++|||++|+.||.+..    ....+......     
T Consensus       151 ~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~----~~~~~~~i~~~-----  218 (320)
T d1xjda_         151 KENML---GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD----EEELFHSIRMD-----  218 (320)
T ss_dssp             BCCCC---TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHC-----
T ss_pred             hhccc---ccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCC----HHHHHHHHHcC-----
Confidence            86533   2233445689999999999999999999999999999999999999997531    11111111100     


Q ss_pred             hhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHH-HHHH
Q 003199          764 MEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMN-EVVQ  805 (840)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~-evl~  805 (840)
                          ....+...   ..++.+++.+|++.||++||++. |+++
T Consensus       219 ----~~~~p~~~---s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         219 ----NPFYPRWL---EKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             ----CCCCCTTS---CHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             ----CCCCCccC---CHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence                11112222   34567788899999999999995 7765

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-45  Score=382.73  Aligned_cols=263  Identities=25%  Similarity=0.287  Sum_probs=193.9

Q ss_pred             cCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCccceE
Q 003199          531 KNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  609 (840)
                      .++||+|+||+||+|.. .+|+.||||++......     .......+.+.+|+.++++++|||||++++++.+....++
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~-----~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~i   77 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRS-----EAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISL   77 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC-----------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEE
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhh-----hhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceee
Confidence            46899999999999965 57999999998543321     1111223568899999999999999999999999999999


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhhhhcc
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQAR  689 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~  689 (840)
                      ||||+.++++....... ..+++.++..++.||+.||+|||+   ++|+||||||+|||++.++.+||+|||+|+.....
T Consensus        78 vmE~~~~~~~~~~~~~~-~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~  153 (299)
T d1ua2a_          78 VFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP  153 (299)
T ss_dssp             EEECCSEEHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC
T ss_pred             hhhhhcchHHhhhhhcc-cCCCHHHHHHHHHHHHHHHHHhhc---cceecccCCcceEEecCCCccccccCccccccCCC
Confidence            99999888777665544 478999999999999999999999   99999999999999999999999999999876432


Q ss_pred             CCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh-ccccchhhh-
Q 003199          690 GGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV-DTKEGIMEV-  766 (840)
Q Consensus       690 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  766 (840)
                         ........||+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+ .+....+... ......... 
T Consensus       154 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~-~l~~i~~~~~~~~~~~~~~~~  229 (299)
T d1ua2a_         154 ---NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD-QLTRIFETLGTPTEEQWPDMC  229 (299)
T ss_dssp             ---CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTTSSSTT
T ss_pred             ---cccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHH-HHHHHHHhcCCCChhhccchh
Confidence               2233446799999999988654 57999999999999999999999997532100 0000000000 000000000 


Q ss_pred             ------cccccCCCc-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          767 ------LDKKLSGSF-----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       767 ------~~~~~~~~~-----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                            .........     .....++.+++.+|++.||++|||++|+++|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~H  280 (299)
T d1ua2a_         230 SLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  280 (299)
T ss_dssp             SSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             ccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCC
Confidence                  000011111     1223567888999999999999999999976

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=382.06  Aligned_cols=258  Identities=26%  Similarity=0.378  Sum_probs=206.0

Q ss_pred             HhcCccCeeeccCCcEEEEEEe------CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc-CCCCcceee
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL------NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI-RHKNIVKLY  598 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~  598 (840)
                      ++|+..+.||+|+||.||+|.+      .+++.||||++.....         ......+.+|+.+++++ +|||||+++
T Consensus        23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~---------~~~~~~~~~E~~~~~~l~~HpnIv~~~   93 (311)
T d1t46a_          23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---------LTEREALMSELKVLSYLGNHMNIVNLL   93 (311)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---------HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccC---------HHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence            5778889999999999999965      2467899999854321         23356788999999999 699999999


Q ss_pred             eEEecCccceEEEeecCCCChHHHhhcCC-----------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 003199          599 CYFSSLYCNLLVYEYMPNGNLWDALHKGL-----------------VHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRD  661 (840)
Q Consensus       599 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-----------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D  661 (840)
                      ++|.+....++||||+++|+|.+++....                 ..+++..+..++.||++||+|||+   +++||||
T Consensus        94 g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~---~~ivHrD  170 (311)
T d1t46a_          94 GACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRD  170 (311)
T ss_dssp             EEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             EEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeecc
Confidence            99999999999999999999999987542                 258999999999999999999999   9999999


Q ss_pred             CCCCCEEEcCCCCCeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHh-CCCCCC
Q 003199          662 IKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELIT-GRKPVE  740 (840)
Q Consensus       662 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~  740 (840)
                      |||+||+++.++.+|++|||.++..... ..........||+.|+|||.+.++.++.++|||||||++|||+| |.+||.
T Consensus       171 LKp~NIl~~~~~~~ki~DfG~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~  249 (311)
T d1t46a_         171 LAARNILLTHGRITKICDFGLARDIKND-SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYP  249 (311)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCTTSC-TTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             cccccccccccCcccccccchheeccCC-CcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999876542 22334455789999999999999999999999999999999999 555554


Q ss_pred             CCCCCCcchhhhhhhhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          741 DDFGDNKNIIYWVSIKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .. .....+...+..          -.....+   ......+.+++.+||+.||++||||+||+++|+++
T Consensus       250 ~~-~~~~~~~~~i~~----------~~~~~~~---~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~  305 (311)
T d1t46a_         250 GM-PVDSKFYKMIKE----------GFRMLSP---EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ  305 (311)
T ss_dssp             TC-CSSHHHHHHHHH----------TCCCCCC---TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHhc----------CCCCCCc---ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            32 111111111110          0111111   12335677888899999999999999999999864

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-44  Score=380.97  Aligned_cols=274  Identities=22%  Similarity=0.298  Sum_probs=200.8

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CC-CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhcc---CCCCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NS-GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNI---RHKNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~  600 (840)
                      ++|+..+.||+|+||+||+|.. ++ ++.||||++........        ....+.+|+.+++.+   +||||++++++
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~--------~~~~~~~E~~~l~~l~~~~HpnIv~~~~~   78 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG--------MPLSTIREVAVLRHLETFEHPNVVRLFDV   78 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS--------CBCTHHHHHHHHHHHHHTCCTTBCCEEEE
T ss_pred             CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccch--------HHHHHHHHHHHHHHHhhcCCCCcceeeee
Confidence            5788999999999999999965 44 67799999865432211        012344567666655   79999999998


Q ss_pred             Eec-----CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          601 FSS-----LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       601 ~~~-----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                      |..     ....+++|||++++++..........+++..+..++.|++.||+|||+   ++||||||||+|||+++++.+
T Consensus        79 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~---~~ivHrDiKp~NILi~~~~~~  155 (305)
T d1blxa_          79 CTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQI  155 (305)
T ss_dssp             EEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCE
T ss_pred             ecccccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecCCCccEEEEcCCCCe
Confidence            843     346789999999888776666666679999999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          676 KVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      ||+|||+++...    .........||+.|+|||++.+..++.++||||+||++|||++|+.||.+..... ........
T Consensus       156 kl~dfg~~~~~~----~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~-~~~~i~~~  230 (305)
T d1blxa_         156 KLADFGLARIYS----FQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGKILDV  230 (305)
T ss_dssp             EECSCCSCCCCC----GGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHH
T ss_pred             eecchhhhhhhc----ccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHH-HHHHHHHh
Confidence            999999987642    2334456789999999999999999999999999999999999999997532100 00000000


Q ss_pred             hh-ccccch-------hhhc----ccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcCCCCC
Q 003199          756 KV-DTKEGI-------MEVL----DKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEADPCRF  815 (840)
Q Consensus       756 ~~-~~~~~~-------~~~~----~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~~~~~  815 (840)
                      .. ......       ....    ..............+.+++.+|++.||++|||++|+++|  +++++.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~~~ke  304 (305)
T d1blxa_         231 IGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERCKE  304 (305)
T ss_dssp             HCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCCCC
T ss_pred             hCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCchhhCC
Confidence            00 000000       0000    000001111223456678889999999999999999987  677766543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-45  Score=376.89  Aligned_cols=246  Identities=24%  Similarity=0.354  Sum_probs=195.4

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC--CCCcceeeeEEe
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR--HKNIVKLYCYFS  602 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~  602 (840)
                      .+|+..+.||+|+||+||+|.. .+|+.||||++..........    ......+.+|+.++++++  |||||++++++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~----~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~   79 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGE----LPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE   79 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEE----CTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhh----hhHHHHHHHHHHHHHHhccCCCCccEEEEEEe
Confidence            4688889999999999999965 579999999986543221110    111233567999999986  899999999999


Q ss_pred             cCccceEEEeecCC-CChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-CCCCeeecc
Q 003199          603 SLYCNLLVYEYMPN-GNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-NYQPKVADF  680 (840)
Q Consensus       603 ~~~~~~lV~e~~~~-gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~Df  680 (840)
                      +.+..++||||+.+ +++.+++.... .+++.++..++.|++.||+|||+   ++|+||||||+|||++. ++.+||+||
T Consensus        80 ~~~~~~lv~e~~~~~~~l~~~~~~~~-~l~e~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NIll~~~~~~vkl~DF  155 (273)
T d1xwsa_          80 RPDSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDF  155 (273)
T ss_dssp             CSSEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCC
T ss_pred             eCCeEEEEEEeccCcchHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCCccccCcccceEEecCCCeEEECcc
Confidence            99999999999976 67888887654 69999999999999999999999   99999999999999985 478999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCC-CccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKA-TTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+|+....     .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||....    ..       ...
T Consensus       156 G~a~~~~~-----~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~----~i-------~~~  219 (273)
T d1xwsa_         156 GSGALLKD-----TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE----EI-------IRG  219 (273)
T ss_dssp             TTCEECCS-----SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----HH-------HHC
T ss_pred             ccceeccc-----ccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch----HH-------hhc
Confidence            99976432     23345679999999999987765 577999999999999999999997420    00       000


Q ss_pred             ccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                              ....+..++   .++.+++.+|++.||++|||++|++++
T Consensus       220 --------~~~~~~~~s---~~~~~li~~~L~~dp~~R~s~~eil~h  255 (273)
T d1xwsa_         220 --------QVFFRQRVS---SECQHLIRWCLALRPSDRPTFEEIQNH  255 (273)
T ss_dssp             --------CCCCSSCCC---HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             --------ccCCCCCCC---HHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence                    011222222   356678889999999999999999875

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=7.2e-44  Score=372.38  Aligned_cols=265  Identities=23%  Similarity=0.288  Sum_probs=198.1

Q ss_pred             HhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecCc
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSLY  605 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  605 (840)
                      ++|+..++||+|+||+||+|..++|+.||||++......        ....+.+.+|+.++++++|||||++++++....
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~--------~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~   73 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED--------EGIPSTTIREISILKELKHSNIVKLYDVIHTKK   73 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG--------GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcC--------hHHHHHHHHHHHHHHhCCCCcEEeeeeecccCC
Confidence            478889999999999999998889999999998554321        122467889999999999999999999999999


Q ss_pred             cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchhh
Q 003199          606 CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAKV  685 (840)
Q Consensus       606 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~  685 (840)
                      ..++|+||+.++.+....... ..+++..+..++.||+.||+|||+   ++||||||||+|||++.++.+|++|||.|..
T Consensus        74 ~~~i~~e~~~~~~~~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~  149 (286)
T d1ob3a_          74 RLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARA  149 (286)
T ss_dssp             CEEEEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHH
T ss_pred             ceeEEEEeehhhhHHHHHhhc-CCcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCCCEEeccccccee
Confidence            999999999876666665544 479999999999999999999999   9999999999999999999999999999987


Q ss_pred             hhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh-ccccch
Q 003199          686 LQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV-DTKEGI  763 (840)
Q Consensus       686 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~  763 (840)
                      ....   ........|++.|+|||.+.+. .++.++||||+||++|||++|+.||.+..... .......... ......
T Consensus       150 ~~~~---~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~-~~~~i~~~~~~~~~~~~  225 (286)
T d1ob3a_         150 FGIP---VRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIFRILGTPNSKNW  225 (286)
T ss_dssp             HCC------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTS
T ss_pred             cccC---ccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHH-HHHHHHHhhCCCChhhc
Confidence            6432   2233445689999999998754 56899999999999999999999997532100 0000000000 000000


Q ss_pred             ---------hhhccccc----CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          764 ---------MEVLDKKL----SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       764 ---------~~~~~~~~----~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                               ........    ..........+.+++.+|++.||++|||++|+++|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~H  281 (286)
T d1ob3a_         226 PNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (286)
T ss_dssp             TTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                     00000000    00011223466788889999999999999999865

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-42  Score=371.18  Aligned_cols=264  Identities=20%  Similarity=0.274  Sum_probs=196.7

Q ss_pred             HhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|. ..+|+.||||++....         .....+.+.+|++++++++||||+++++++...
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~---------~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~   78 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE---------HQTYCQRTLREIKILLRFRHENIIGINDIIRAP   78 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT---------CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCS
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc---------ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeec
Confidence            468889999999999999995 4689999999984322         123356788999999999999999999998664


Q ss_pred             c----cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          605 Y----CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       605 ~----~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      .    ..+++++|+.+|+|.+++...  .+++..+..++.|++.||+|||+   ++||||||||+|||++.++.+||+||
T Consensus        79 ~~~~~~~~~l~~~~~~g~L~~~l~~~--~l~~~~i~~i~~qil~al~yLH~---~~iiHRDIKp~NILl~~~~~~kl~Df  153 (345)
T d1pmea_          79 TIEQMKDVYLVTHLMGADLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDF  153 (345)
T ss_dssp             STTTCCCEEEEEECCCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCC
T ss_pred             cccccceEEEEEeecCCchhhhhhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCcceEEECCCCCEEEccc
Confidence            3    235566777799999999765  68999999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT  759 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  759 (840)
                      |+|+................||+.|+|||.+.. ..++.++||||+||++|||++|+.||......   ...+.......
T Consensus       154 G~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~---~~~~~~~~~~~  230 (345)
T d1pmea_         154 GLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYL---DQLNHILGILG  230 (345)
T ss_dssp             TTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHHHC
T ss_pred             CceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHH---HHHHHHhhhcc
Confidence            999876543333333455779999999999854 45789999999999999999999999754211   00010000000


Q ss_pred             ccc-----------hhh---hcccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          760 KEG-----------IME---VLDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       760 ~~~-----------~~~---~~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      ...           ...   .........+    .....++.+++.+|++.||++|||++|++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         231 SPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             SCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            000           000   0000000111    1122467789999999999999999999987

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-42  Score=369.23  Aligned_cols=266  Identities=23%  Similarity=0.318  Sum_probs=194.9

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....        .....+.+.+|++++++++|||||+++++|...
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~--------~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~   89 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ--------SELFAKRAYRELRLLKHMRHENVIGLLDVFTPD   89 (346)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS--------SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSC
T ss_pred             CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhc--------ChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccC
Confidence            5788899999999999999965 5799999999853321        123456788999999999999999999999765


Q ss_pred             c------cceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          605 Y------CNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       605 ~------~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      +      ..++||||+ +++|.......  .+++..++.++.|++.||+|||+   ++||||||||+|||++.++.+|++
T Consensus        90 ~~~~~~~~~~lv~e~~-~~~l~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~---~~IiHrDiKp~NIL~~~~~~~kl~  163 (346)
T d1cm8a_          90 ETLDDFTDFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKIL  163 (346)
T ss_dssp             SSTTTCCCCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEEC
T ss_pred             ccccccceEEEEEecc-cccHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHh---CCCcccccCcchhhcccccccccc
Confidence            4      469999999 67788777654  69999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhh
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKV  757 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  757 (840)
                      |||+|+....      ......||+.|+|||.+.+. .++.++||||+||++|||++|+.||.+.... ...........
T Consensus       164 Dfg~a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~-~~~~~~~~~~~  236 (346)
T d1cm8a_         164 DFGLARQADS------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL-DQLKEIMKVTG  236 (346)
T ss_dssp             CCTTCEECCS------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHC
T ss_pred             cccceeccCC------ccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChH-HHHHHHHhccC
Confidence            9999976532      23456799999999998764 5689999999999999999999999753210 00000000000


Q ss_pred             cc------------ccchh----hhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcCC
Q 003199          758 DT------------KEGIM----EVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEADP  812 (840)
Q Consensus       758 ~~------------~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~~  812 (840)
                      ..            .....    ......+..........+.+++.+|++.||++|||++|+++|  ++++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~  309 (346)
T d1cm8a_         237 TPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD  309 (346)
T ss_dssp             CCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-
T ss_pred             CCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCCC
Confidence            00            00000    000001111112223456788889999999999999999997  665543

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-42  Score=364.11  Aligned_cols=269  Identities=21%  Similarity=0.282  Sum_probs=194.0

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      ..+|+..+.||+|+||+||+|.. .+|+.||||++......        ....+.+.+|++++++++|||++++++++..
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~--------~~~~~~~~~E~~il~~l~h~nii~~~~~~~~   80 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEK--------EGFPITALREIKILQLLKHENVVNLIEICRT   80 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CT--------TSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc--------hHHHHHHHHHHHHHHHhcCCCccceEeeeec
Confidence            36788999999999999999965 58999999998554322        1223567889999999999999999998755


Q ss_pred             --------CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCC
Q 003199          604 --------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQP  675 (840)
Q Consensus       604 --------~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~  675 (840)
                              ....++||||++++.+...... ...++...+..++.|++.||+|||+   ++||||||||+|||++.++.+
T Consensus        81 ~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~-~~~~~~~~~~~i~~qil~~l~~lH~---~~ivHrDlKp~NILl~~~~~~  156 (318)
T d3blha1          81 KASPYNRCKGSIYLVFDFCEHDLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVL  156 (318)
T ss_dssp             ----------CEEEEEECCCEEHHHHHTCT-TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCE
T ss_pred             ccccccccCceEEEEEeccCCCccchhhhc-ccccccHHHHHHHHHHHHHHHHhcc---CCEEecCcCchheeecCCCcE
Confidence                    3457899999987766544443 4478999999999999999999999   999999999999999999999


Q ss_pred             eeecccchhhhhccCC-CCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh
Q 003199          676 KVADFGIAKVLQARGG-KDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV  753 (840)
Q Consensus       676 kl~Dfg~a~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~  753 (840)
                      |++|||+++....... .........||+.|+|||.+.+. .++.++||||+||++|||++|+.||.+.... .......
T Consensus       157 kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~-~~~~~i~  235 (318)
T d3blha1         157 KLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ-HQLALIS  235 (318)
T ss_dssp             EECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHH
T ss_pred             EeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHH-HHHHHHH
Confidence            9999999976543211 11223345799999999998765 6899999999999999999999999753210 0000000


Q ss_pred             hhhhccccch-hh--------hc--ccccCCCcHHH------HHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          754 SIKVDTKEGI-ME--------VL--DKKLSGSFRDE------MIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       754 ~~~~~~~~~~-~~--------~~--~~~~~~~~~~~------~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .......... ..        ..  .........+.      ...+.+++.+|++.||++|||++|+++|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         236 QLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             HHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence            0000000000 00        00  00001111111      2356788999999999999999999987

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-41  Score=357.52  Aligned_cols=261  Identities=20%  Similarity=0.198  Sum_probs=195.6

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCccee-eeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKL-YCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-~~~~~~  603 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....            .+.+..|+++++.++|+|++.. .+++.+
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~------------~~~~~~E~~i~~~l~~~~~i~~~~~~~~~   74 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK------------HPQLHIESKIYKMMQGGVGIPTIRWCGAE   74 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT------------SCCHHHHHHHHHHSTTSTTCCCEEEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc------------CHHHHHHHHHHHHccCCCcccEEEEEEec
Confidence            3588889999999999999965 5789999998754321            1236789999999987765555 555677


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc---CCCCCeeecc
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD---VNYQPKVADF  680 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~Df  680 (840)
                      ....++||||+ ++++.+.+......+++..+..++.|++.||+|||+   ++||||||||+|||++   .+..+|++||
T Consensus        75 ~~~~~ivme~~-~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiHrDiKp~NIl~~~~~~~~~vkl~DF  150 (299)
T d1ckia_          75 GDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDF  150 (299)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCC
T ss_pred             CCEEEEEEEEc-CCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHhhccccccCCCceeeeecc
Confidence            78889999999 667777776666689999999999999999999999   9999999999999986   3557999999


Q ss_pred             cchhhhhccCCC----CcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh
Q 003199          681 GIAKVLQARGGK----DSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIK  756 (840)
Q Consensus       681 g~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~  756 (840)
                      |+|+.+......    ........||+.|||||.+.+..++.++|||||||++|||+||+.||............ ....
T Consensus       151 G~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~-~~~~  229 (299)
T d1ckia_         151 GLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKY-ERIS  229 (299)
T ss_dssp             SSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------H-HHHH
T ss_pred             CcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHH-HHhh
Confidence            999887543221    12334567999999999999999999999999999999999999999764322211111 0000


Q ss_pred             hccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          757 VDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      ....    ........+.   .+.++.+++.+||+.+|++||+++++.+.|+++
T Consensus       230 ~~~~----~~~~~~~~~~---~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~  276 (299)
T d1ckia_         230 EKKM----STPIEVLCKG---YPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL  276 (299)
T ss_dssp             HHHH----HSCHHHHTTT---SCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHH
T ss_pred             cccC----CCChhHhccC---CCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence            0000    0000011111   224567788899999999999999998888764

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-42  Score=370.29  Aligned_cols=262  Identities=29%  Similarity=0.392  Sum_probs=190.6

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec--
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS--  603 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--  603 (840)
                      .|+..++||+|+||+||+|.. .+|+.||||++......              +.+|++++++++||||+++++++..  
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~--------------~~~Ei~il~~l~h~niv~~~~~~~~~~   86 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF--------------KNRELQIMRKLDHCNIVRLRYFFYSSG   86 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS--------------CCHHHHHHHHCCCTTBCCEEEEEEEC-
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH--------------HHHHHHHHHhcCCCCCCcEEEEEEecC
Confidence            577888999999999999966 47999999998543311              2369999999999999999999843  


Q ss_pred             ----CccceEEEeecCCCChHHHhh--cCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-CCe
Q 003199          604 ----LYCNLLVYEYMPNGNLWDALH--KGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPK  676 (840)
Q Consensus       604 ----~~~~~lV~e~~~~gsL~~~l~--~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~k  676 (840)
                          ..+.++||||++++.+.....  .....+++.+++.++.||+.||+|||+   ++|+||||||+|||++.++ .+|
T Consensus        87 ~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~---~~IiHrDiKp~NILl~~~~~~~k  163 (350)
T d1q5ka_          87 EKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLK  163 (350)
T ss_dssp             -CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTTCCEE
T ss_pred             ccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHh---cCCcccCCCcceEEEecCCCcee
Confidence                234689999997664443332  234479999999999999999999999   9999999999999999775 889


Q ss_pred             eecccchhhhhccCCCCcceecccccccccCcccccc-CCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh
Q 003199          677 VADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYS-SKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI  755 (840)
Q Consensus       677 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~  755 (840)
                      |+|||+++....    ........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||...... ..+......
T Consensus       164 l~DFG~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~-~~l~~i~~~  238 (350)
T d1q5ka_         164 LCDFGSAKQLVR----GEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-DQLVEIIKV  238 (350)
T ss_dssp             ECCCTTCEECCT----TSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHH
T ss_pred             EecccchhhccC----CcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHH-HHHHHHHHH
Confidence            999999987633    223345679999999998765 56899999999999999999999999753211 000000000


Q ss_pred             hhc-cccchhhh----ccccc---------CCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhc
Q 003199          756 KVD-TKEGIMEV----LDKKL---------SGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEA  810 (840)
Q Consensus       756 ~~~-~~~~~~~~----~~~~~---------~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~  810 (840)
                      ... ..+.....    .+...         .........++.+++.+|++.||++|||+.|+++|  ++++
T Consensus       239 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~  309 (350)
T d1q5ka_         239 LGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDEL  309 (350)
T ss_dssp             HCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred             hCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccc
Confidence            000 00000000    00000         00011233457788889999999999999999986  4444

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.1e-41  Score=353.78  Aligned_cols=261  Identities=18%  Similarity=0.216  Sum_probs=202.7

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC-CCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH-KNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~  603 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++.....            ...+.+|++.++.+.| +|++.+++++..
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~------------~~~~~~e~~~~~~l~~~~~i~~~~~~~~~   72 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD------------APQLRDEYRTYKLLAGCTGIPNVYYFGQE   72 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT------------SCCHHHHHHHHHHTTTCTTCCCEEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC------------cHHHHHHHHHHHHhcCCCCCCEEEEEeec
Confidence            4688889999999999999965 4789999998743321            1235678888888865 899999999999


Q ss_pred             CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcC-----CCCCeee
Q 003199          604 LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDV-----NYQPKVA  678 (840)
Q Consensus       604 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-----~~~~kl~  678 (840)
                      ....++||||+ +++|.+++......+++.++..++.|++.||+|||+   ++|+||||||+|||++.     ++.+||+
T Consensus        73 ~~~~~~vme~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~---~giiHrDiKp~Nili~~~~~~~~~~vkl~  148 (293)
T d1csna_          73 GLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVV  148 (293)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             CCccEEEEEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH---CCceeccCCccceeecCcccccCCceEEc
Confidence            99999999999 789999998776689999999999999999999999   99999999999999974     5679999


Q ss_pred             cccchhhhhccCCCC----cceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 003199          679 DFGIAKVLQARGGKD----STTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVS  754 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~  754 (840)
                      |||+|+.+.......    .......||+.|||||.+.+..++.++|||||||++|||+||+.||.......... ....
T Consensus       149 DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~-~~~~  227 (293)
T d1csna_         149 DFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ-KYER  227 (293)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHH-HHHH
T ss_pred             ccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHH-HHHH
Confidence            999998875432211    23345679999999999999999999999999999999999999997543222111 1111


Q ss_pred             hhhccccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHhhhc
Q 003199          755 IKVDTKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQLLAEA  810 (840)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~L~~~  810 (840)
                      .......    .....+.+.+   +.++.+++..|+..+|++||+++.+.+.|+++
T Consensus       228 i~~~~~~----~~~~~l~~~~---p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~  276 (293)
T d1csna_         228 IGEKKQS----TPLRELCAGF---PEEFYKYMHYARNLAFDATPDYDYLQGLFSKV  276 (293)
T ss_dssp             HHHHHHH----SCHHHHTTTS---CHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred             HHhccCC----CChHHhcCCC---CHHHHHHHHHHhcCCcccCcCHHHHHHHHHHH
Confidence            0000000    0001111122   24566777899999999999999998888764

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-41  Score=356.21  Aligned_cols=266  Identities=22%  Similarity=0.271  Sum_probs=202.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEecC
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSSL  604 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  604 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||+++.....        ....+.+.+|+.+++.++||||+++++++.+.
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~--------~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~   73 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD--------EGVPSSALREICLLKELKHKNIVRLHDVLHSD   73 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS--------TTHHHHHHHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCC--------hHHHHHHHHHHHHHHhcCcCCEEeeccccccc
Confidence            4688899999999999999965 58999999998543311        23456788999999999999999999999999


Q ss_pred             ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          605 YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       605 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++|+|++.++++...+.... .+++..+..++.|++.||+|||+   ++||||||||+|||++.++.+||+|||.|+
T Consensus        74 ~~~~iv~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~q~~~aL~~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~a~  149 (292)
T d1unla_          74 KKLTLVFEFCDQDLKKYFDSCNG-DLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLAR  149 (292)
T ss_dssp             SEEEEEEECCSEEHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             cceeEEeeecccccccccccccc-ccchhHHHHHHHHHHHHHHHhhc---CCEeeecccCcccccccCCceeeeecchhh
Confidence            99999999999999888776654 78999999999999999999999   999999999999999999999999999998


Q ss_pred             hhhccCCCCcceecccccccccCccccccCC-CCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhcc-ccc
Q 003199          685 VLQARGGKDSTTTVIAGTYGYLAPEYAYSSK-ATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVDT-KEG  762 (840)
Q Consensus       685 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-~~~  762 (840)
                      ....   .........+++.|+|||.+.+.. ++.++||||+||++|||++|+.||....+............... ...
T Consensus       150 ~~~~---~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  226 (292)
T d1unla_         150 AFGI---PVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQ  226 (292)
T ss_dssp             ECCS---CCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTT
T ss_pred             cccC---CCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhh
Confidence            7643   222334456788999999887655 68999999999999999999999754221111110000000000 000


Q ss_pred             h------hhh-------cccccCCCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          763 I------MEV-------LDKKLSGSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       763 ~------~~~-------~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                      .      ...       ...............+.+++.+|++.||.+|||++|+++|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~H  283 (292)
T d1unla_         227 WPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             CTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             hhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            0      000       0000111112233456778889999999999999999875

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=4.3e-41  Score=358.59  Aligned_cols=257  Identities=19%  Similarity=0.287  Sum_probs=194.5

Q ss_pred             HhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcceeeeEEec
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIVKLYCYFSS  603 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~  603 (840)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++....             .+.+.+|+++++.+. ||||+++++++..
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-------------~~~~~~Ei~il~~l~~hpnIv~~~~~~~~  101 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK-------------KKKIKREIKILENLRGGPNIITLADIVKD  101 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC-------------HHHHHHHHHHHHHHTTSTTBCCEEEEEEC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH-------------HHHHHHHHHHHHhccCCCCCcEEEEEEEe
Confidence            5799999999999999999965 579999999984322             346788999999995 9999999999874


Q ss_pred             --CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCC-CCeeecc
Q 003199          604 --LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNY-QPKVADF  680 (840)
Q Consensus       604 --~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~Df  680 (840)
                        ....++||||+++++|.....    .+++..+..++.||+.||+|||+   ++||||||||+|||++.++ .+||+||
T Consensus       102 ~~~~~~~~v~e~~~~~~L~~~~~----~l~e~~i~~i~~qil~aL~~LH~---~gIvHrDiKp~NILi~~~~~~vkl~DF  174 (328)
T d3bqca1         102 PVSRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDW  174 (328)
T ss_dssp             TTTCSEEEEEECCCSCBGGGTTT----SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCG
T ss_pred             cCCCceeEEEeecCCCcHHHHhc----CCCHHHHHHHHHHHHHHHHHHhh---cccccccccccceEEcCCCCeeeeccc
Confidence              456789999999999977643    58999999999999999999999   9999999999999998765 5899999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhh----
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSI----  755 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~----  755 (840)
                      |+|+....    ........||+.|+|||.+.+. .++.++||||+||++|||++|+.||................    
T Consensus       175 G~a~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~  250 (328)
T d3bqca1         175 GLAEFYHP----GQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTE  250 (328)
T ss_dssp             GGCEECCT----TCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHH
T ss_pred             ccceeccC----CCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCc
Confidence            99987643    2234556789999999998765 47999999999999999999999997532211100000000    


Q ss_pred             ---------hhccccchhhhcccc--------cC-CCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          756 ---------KVDTKEGIMEVLDKK--------LS-GSFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       756 ---------~~~~~~~~~~~~~~~--------~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                               ...............        .. ........++.+++.+|++.||++|||++|+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~H  319 (328)
T d3bqca1         251 DLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  319 (328)
T ss_dssp             HHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                     000000000000000        00 0111223567788899999999999999999875

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-42  Score=361.26  Aligned_cols=257  Identities=25%  Similarity=0.318  Sum_probs=200.3

Q ss_pred             HhcCccCeeeccCCcEEEEEEe----CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCC-CCcceeeeE
Q 003199          526 EAMTEKNKVGQGGSGTVYKIDL----NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRH-KNIVKLYCY  600 (840)
Q Consensus       526 ~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~  600 (840)
                      ++|+..+.||+|+||+||+|..    .+|+.||||++........      ....+.+.+|++++++++| |||++++++
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~------~~~~~~~~~E~~il~~l~h~pnIv~~~~~   97 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQK------AKTTEHTRTERQVLEHIRQSPFLVTLHYA   97 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEE------ESSGGGCCCHHHHHHHHHTCTTBCCEEEE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccc------hHHHHHHHHHHHHHHhccCCCeEEEeeee
Confidence            5688999999999999999954    2589999999864432111      1113456789999999977 899999999


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      +.+....++||||+.+|+|.+++.... .++...+..++.|++.|++|+|+   .+||||||||+||+++.++.+||+||
T Consensus        98 ~~~~~~~~~v~e~~~~~~L~~~i~~~~-~~~e~~~~~~~~Qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~vkL~DF  173 (322)
T d1vzoa_          98 FQTETKLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDF  173 (322)
T ss_dssp             EEETTEEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEESCS
T ss_pred             eccCCceeeeeecccccHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHhhc---CCEEeccCCccceeecCCCCEEEeec
Confidence            999999999999999999999998765 57889999999999999999999   99999999999999999999999999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccC--CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhc
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS--KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWVSIKVD  758 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~  758 (840)
                      |+|+.+...  .........|++.|+|||.+.+.  .++.++||||+||++|||++|+.||.+........... .....
T Consensus       174 G~a~~~~~~--~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~-~~~~~  250 (322)
T d1vzoa_         174 GLSKEFVAD--ETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEIS-RRILK  250 (322)
T ss_dssp             SEEEECCGG--GGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHH-HHHHH
T ss_pred             cchhhhccc--ccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-Hhccc
Confidence            999876432  22334456799999999998654  46889999999999999999999997653322211111 10000


Q ss_pred             cccchhhhcccccCCCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 003199          759 TKEGIMEVLDKKLSGSFRDEMIQVLRIAIRCTSKSPATRP-----TMNEVVQL  806 (840)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~evl~~  806 (840)
                      .        ....+.   .....+.+++.+|+++||++||     +++|+++|
T Consensus       251 ~--------~~~~~~---~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~H  292 (322)
T d1vzoa_         251 S--------EPPYPQ---EMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  292 (322)
T ss_dssp             C--------CCCCCT---TSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             C--------CCCCcc---cCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcC
Confidence            0        111112   2345666788899999999999     48999875

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-41  Score=360.17  Aligned_cols=263  Identities=22%  Similarity=0.269  Sum_probs=189.6

Q ss_pred             HHhcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||+|.. .+|+.||||++......        ....+.+.+|+.++++++|||||++++++..
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~--------~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~   87 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQN--------QTHAKRAYRELVLMKCVNHKNIISLLNVFTP   87 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSS--------HHHHHHHHHHHHHHHHCCCTTBCCCSEEECS
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcC--------HHHHHHHHHHHHHHHhcCCCCeeEEEEEEec
Confidence            35788999999999999999965 57999999998543311        2335678899999999999999999999854


Q ss_pred             ------CccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCee
Q 003199          604 ------LYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKV  677 (840)
Q Consensus       604 ------~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl  677 (840)
                            ....|+||||+.++ +.+.+..   .+++..++.++.||+.||+|||+   +||+||||||+|||++.++.+|+
T Consensus        88 ~~~~~~~~~~~iv~Ey~~~~-l~~~~~~---~~~~~~i~~~~~qil~gl~~LH~---~giiHrDlKP~Nil~~~~~~~kl  160 (355)
T d2b1pa1          88 QKTLEEFQDVYLVMELMDAN-LCQVIQM---ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKI  160 (355)
T ss_dssp             CCSTTTCCEEEEEEECCSEE-HHHHHTS---CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEE
T ss_pred             ccccccCceeEEEEeccchH-HHHhhhc---CCCHHHHHHHHHHHHHHHHHhhh---cccccccCCccccccccccceee
Confidence                  35779999999655 4444443   58999999999999999999999   99999999999999999999999


Q ss_pred             ecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCCCCcch--------
Q 003199          678 ADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNI--------  749 (840)
Q Consensus       678 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~--------  749 (840)
                      +|||+++....    ........||+.|+|||++.+..+++++||||+||++|||++|+.||.+........        
T Consensus       161 ~df~~~~~~~~----~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~  236 (355)
T d2b1pa1         161 LDFGLARTAGT----SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGT  236 (355)
T ss_dssp             CCCCC-------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCC
T ss_pred             echhhhhcccc----ccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccC
Confidence            99999876533    234455679999999999999999999999999999999999999997532100000        


Q ss_pred             ---hhhhhhh-------hc----cccchhhhccccc-CC---CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 003199          750 ---IYWVSIK-------VD----TKEGIMEVLDKKL-SG---SFRDEMIQVLRIAIRCTSKSPATRPTMNEVVQL  806 (840)
Q Consensus       750 ---~~~~~~~-------~~----~~~~~~~~~~~~~-~~---~~~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~  806 (840)
                         ..|....       ..    ............. ..   ........+.+++.+|++.||++|||++|+++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         237 PCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             CCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence               0000000       00    0000011111111 11   112345678899999999999999999999987

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-40  Score=352.11  Aligned_cols=266  Identities=21%  Similarity=0.300  Sum_probs=196.0

Q ss_pred             HHhcCccCeeeccCCcEEEEEE-eCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCcceeeeEEec
Q 003199          525 LEAMTEKNKVGQGGSGTVYKID-LNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCYFSS  603 (840)
Q Consensus       525 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  603 (840)
                      .++|+..+.||+|+||+||+|. ..+|+.||||++.....        .....+.+.+|++++++++|||+|++++++..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~--------~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~   88 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ--------SIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   88 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTS--------SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECS
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhc--------ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            3568899999999999999996 46899999999854321        12335678899999999999999999999854


Q ss_pred             C-----ccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeee
Q 003199          604 L-----YCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVA  678 (840)
Q Consensus       604 ~-----~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~  678 (840)
                      .     ...++|++|+.+|+|.+++..+  .+++.++..++.||+.||+|||+   ++|+||||||+|||++.++.+|++
T Consensus        89 ~~~~~~~~~~~i~~~~~gg~L~~~~~~~--~l~e~~~~~i~~qil~aL~~LH~---~giiHrDiKp~NILi~~~~~~kl~  163 (348)
T d2gfsa1          89 ARSLEEFNDVYLVTHLMGADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKIL  163 (348)
T ss_dssp             CSSTTTCCCCEEEEECCSEEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             ccccccCceEEEEEeecCCchhhhcccc--cccHHHHHHHHHHHHHHHHHHHh---CCCcccccCCcccccccccccccc
Confidence            3     3447778888899999999764  69999999999999999999999   999999999999999999999999


Q ss_pred             cccchhhhhccCCCCcceecccccccccCccccccC-CCCccccchhHHHHHHHHHhCCCCCCCCCCCCcchhhhh-hhh
Q 003199          679 DFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSS-KATTKCDVYSFGVVLMELITGRKPVEDDFGDNKNIIYWV-SIK  756 (840)
Q Consensus       679 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~-~~~  756 (840)
                      |||.|....      .......||+.|+|||...+. .++.++||||+||++|||++|+.||.+...  ....... ...
T Consensus       164 dfg~a~~~~------~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~--~~~~~~i~~~~  235 (348)
T d2gfsa1         164 DFGLARHTD------DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH--IDQLKLILRLV  235 (348)
T ss_dssp             CC----CCT------GGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHHH
T ss_pred             ccchhcccC------cccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCH--HHHHHHHHHhc
Confidence            999997543      233456799999999987665 468999999999999999999999975311  0000000 000


Q ss_pred             hcccc---------c---hhhhcccccCCCc----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--hhhcC
Q 003199          757 VDTKE---------G---IMEVLDKKLSGSF----RDEMIQVLRIAIRCTSKSPATRPTMNEVVQL--LAEAD  811 (840)
Q Consensus       757 ~~~~~---------~---~~~~~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~Rps~~evl~~--L~~~~  811 (840)
                      .....         .   ............+    ......+.+++.+|++.||++|||++|+++|  +.+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~  308 (348)
T d2gfsa1         236 GTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYH  308 (348)
T ss_dssp             CCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTC
T ss_pred             CCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCC
Confidence            00000         0   0000000000011    1123456788899999999999999999986  55443

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-35  Score=319.32  Aligned_cols=282  Identities=21%  Similarity=0.226  Sum_probs=194.6

Q ss_pred             hcCccCeeeccCCcEEEEEEe-CCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-----------CCCc
Q 003199          527 AMTEKNKVGQGGSGTVYKIDL-NSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-----------HKNI  594 (840)
Q Consensus       527 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~ni  594 (840)
                      +|+..+.||+|+||+||+|.. .+|+.||||++....           ...+.+.+|+.+++.+.           |+||
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-----------~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~i   82 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-----------VYTEAAEDEIKLLQRVNDADNTKEDSMGANHI   82 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-----------HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTB
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-----------cchHHHHHHHHHHHHhcchhhhhhhhcCcCce
Confidence            488899999999999999965 589999999985321           22355677888887775           5789


Q ss_pred             ceeeeEEec--CccceEEEeecCCCChHHH--hhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEc
Q 003199          595 VKLYCYFSS--LYCNLLVYEYMPNGNLWDA--LHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLD  670 (840)
Q Consensus       595 v~l~~~~~~--~~~~~lV~e~~~~gsL~~~--l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~  670 (840)
                      +++++++..  ....+++++++..+.....  .......+++..+..++.||+.|++|||+.  .+|+||||||+|||++
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~--~~IvHrDlKp~NIll~  160 (362)
T d1q8ya_          83 LKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLME  160 (362)
T ss_dssp             CCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEE
T ss_pred             EEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhh--cCcccccCChhHeeee
Confidence            999988754  3455667777655543332  223345789999999999999999999973  7899999999999998


Q ss_pred             CCCC------CeeecccchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHHHHHHhCCCCCCCCCC
Q 003199          671 VNYQ------PKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGRKPVEDDFG  744 (840)
Q Consensus       671 ~~~~------~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~  744 (840)
                      .++.      ++++|||.|.....      ......||+.|+|||++.+..++.++||||+||+++||++|+.||.....
T Consensus       161 ~~~~~~~~~~~kl~dfg~s~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~  234 (362)
T d1q8ya_         161 IVDSPENLIQIKIADLGNACWYDE------HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEG  234 (362)
T ss_dssp             EEETTTTEEEEEECCCTTCEETTB------CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             ccCcccccceeeEeeccccccccc------ccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCcc
Confidence            6654      89999999876532      23456799999999999999999999999999999999999999975432


Q ss_pred             CCc-c----hhhhhhhhhcc-------ccchhhhcc-----c---------------ccCCCcHHHHHHHHHHHHHccCC
Q 003199          745 DNK-N----IIYWVSIKVDT-------KEGIMEVLD-----K---------------KLSGSFRDEMIQVLRIAIRCTSK  792 (840)
Q Consensus       745 ~~~-~----~~~~~~~~~~~-------~~~~~~~~~-----~---------------~~~~~~~~~~~~l~~l~~~cl~~  792 (840)
                      ... .    ...........       ........+     .               ............+.+++.+|+..
T Consensus       235 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~  314 (362)
T d1q8ya_         235 HSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQL  314 (362)
T ss_dssp             ----CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCS
T ss_pred             ccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCC
Confidence            110 0    00000000000       000000000     0               01112245667889999999999


Q ss_pred             CCCCCCCHHHHHHH--hhhcCCCCCCCCCCCCCccccCC
Q 003199          793 SPATRPTMNEVVQL--LAEADPCRFESCKFPNKSNKESS  829 (840)
Q Consensus       793 dP~~Rps~~evl~~--L~~~~~~~~~~~~~~~~~~~~~~  829 (840)
                      ||++|||++|+++|  +++..  +.+....|.+..-.++
T Consensus       315 dP~~Rpta~e~L~Hp~f~~~~--~~~~~~~p~~~~~~~~  351 (362)
T d1q8ya_         315 DPRKRADAGGLVNHPWLKDTL--GMEEIRVPDRELYGSG  351 (362)
T ss_dssp             STTTCBCHHHHHTCGGGTTCT--TCTTCCCTTSCTTCBS
T ss_pred             ChhHCcCHHHHhcCcccCCCC--CcccCCCCCcccCCCC
Confidence            99999999999987  55333  3334444444433333

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=5e-29  Score=271.80  Aligned_cols=210  Identities=24%  Similarity=0.353  Sum_probs=107.4

Q ss_pred             CCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhh
Q 003199          164 LPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFL  243 (840)
Q Consensus       164 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  243 (840)
                      .+.........|...  ....+..+++++.|++++|.+++..+  +..+++|+.|++++|+++..  ..+..+++|+.++
T Consensus       174 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  247 (384)
T d2omza2         174 LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD  247 (384)
T ss_dssp             CTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             ccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhc
Confidence            333444444444432  23345556666666666666654332  34455666666666665532  2344444455555


Q ss_pred             cccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeee
Q 003199          244 VLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISG  323 (840)
Q Consensus       244 l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  323 (840)
                      +.+|.+.+..+  +..+++|+.|++++|++++. + .+..++.++.++++.|++++.  ..+..+++++.|++++|++++
T Consensus       248 l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~  321 (384)
T d2omza2         248 LANNQISNLAP--LSGLTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD  321 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSC
T ss_pred             cccCccCCCCc--ccccccCCEeeccCcccCCC-C-ccccccccccccccccccccc--cccchhcccCeEECCCCCCCC
Confidence            55554443322  44555555555555555422 1 244555555555555555532  224455555555555555554


Q ss_pred             ccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCc
Q 003199          324 FIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN  391 (840)
Q Consensus       324 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  391 (840)
                      ..  .+..+++|+.|++++|+|++ ++ .++++++|+.|+|++|+|++..|  +.++++|+.|+|++|
T Consensus       322 l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         322 IS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             Cc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            32  24555555555555555553 22 35555555555555555554333  555555555555555

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.6e-30  Score=275.00  Aligned_cols=248  Identities=29%  Similarity=0.454  Sum_probs=118.4

Q ss_pred             CCCeeecccCccccc--cCCcccCCCCCCCeeeccC-CcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCE
Q 003199          117 NLRQLELYYNQQLAG--TIPEELGNLTELTDLDMSV-NHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTM  193 (840)
Q Consensus       117 ~L~~L~L~~n~~~~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  193 (840)
                      +++.|+|++|. +.+  .+|..++++++|++|+|++ |++++.+|..|.++++|++|+|++|++.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~-l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCC-CCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            45556666554 222  3555566666666666654 5555555555666666666666666665555555555566666


Q ss_pred             EEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCcee
Q 003199          194 LSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHL  273 (840)
Q Consensus       194 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l  273 (840)
                      +++++|++.+.+|..+..++.|+.+++++|.+.+.+|..+..+..+                       ++.+++++|++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l-----------------------~~~l~~~~n~l  186 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-----------------------FTSMTISRNRL  186 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT-----------------------CCEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccc-----------------------ccccccccccc
Confidence            6666665555555555555555555555555554444443333322                       13344444444


Q ss_pred             eccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcc
Q 003199          274 EGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGI  353 (840)
Q Consensus       274 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  353 (840)
                      ++..|..+..+..+ .+++++|.+.+.++..+..+++|+.+++++|.+.+.+ ..+..+++|+.|+|++|+++|.+|..|
T Consensus       187 ~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l  264 (313)
T d1ogqa_         187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             EEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHH
Confidence            44333333333222 3444444444444444444444444444444443222 223333444444444444444444444


Q ss_pred             cCccccchhcccCCccCCCcchhcccccCCCEEECcCc
Q 003199          354 GNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNN  391 (840)
Q Consensus       354 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  391 (840)
                      +++++|+.|+|++|+|+|.+|. ++++++|+.+++++|
T Consensus       265 ~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         265 TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN  301 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSS
T ss_pred             hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCC
Confidence            4444444444444444443332 233444444444444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.2e-29  Score=268.05  Aligned_cols=255  Identities=29%  Similarity=0.436  Sum_probs=222.7

Q ss_pred             CCCCcEEEccCCcccc--cCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCc
Q 003199           91 VTSLTDLELTGNFITG--HIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLR  168 (840)
Q Consensus        91 l~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (840)
                      -.+++.|+|++|.+.+  .+|..+++|++|++|+|++++.+.+.+|..|+++++|++|+|++|++.+..+..+..+.+|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            3479999999999987  47899999999999999973337788999999999999999999999999999999999999


Q ss_pred             EEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCc-ceeccccccccccCCccccCCCCchhhhcccc
Q 003199          169 VLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPL-VVLDLSENKLSGPLPAKVCSRGKLQYFLVLQN  247 (840)
Q Consensus       169 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n  247 (840)
                      .+++++|.+.+..|..+.+++.|+++++++|.+.+.+|..+..+..+ +.+++++|++++..+.                
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~----------------  192 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP----------------  192 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG----------------
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccc----------------
Confidence            99999999999999999999999999999999999999999888776 8899999998865544                


Q ss_pred             cccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccch
Q 003199          248 MFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPS  327 (840)
Q Consensus       248 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  327 (840)
                              .+..+. +..++++++...+.+|..+..+++|+.+++++|.+.+.++ .++.+++|+.|+|++|++++.+|.
T Consensus       193 --------~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~  262 (313)
T d1ogqa_         193 --------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             --------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCG
T ss_pred             --------cccccc-cccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCCh
Confidence                    344443 3468888888888888888888888889998888886654 578889999999999999999999


Q ss_pred             hhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCc-cCCC
Q 003199          328 EIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNK-LNSS  372 (840)
Q Consensus       328 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~  372 (840)
                      .+.++++|++|+|++|+|+|.+|. ++++++|+.+++++|+ +.|.
T Consensus       263 ~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             HHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            999999999999999999988885 6789999999999997 5554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=4.4e-28  Score=264.19  Aligned_cols=356  Identities=23%  Similarity=0.278  Sum_probs=273.7

Q ss_pred             EecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEccC
Q 003199           22 LDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLELTG  101 (840)
Q Consensus        22 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  101 (840)
                      ..++.+.+++.+.  ...+.+|++|++++|.   |.++  +.+..+++|++|+|++|.|++..  .++++++|++|++++
T Consensus        27 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~---I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~   97 (384)
T d2omza2          27 TVLGKTNVTDTVS--QTDLDQVTTLQADRLG---IKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNN   97 (384)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECCSSC---CCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred             HHhCCCCCCCccC--HHHhCCCCEEECCCCC---CCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccc
Confidence            4677777775544  3567788999999884   4444  24778888999999999888543  388899999999999


Q ss_pred             CcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccccccc
Q 003199          102 NFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEI  181 (840)
Q Consensus       102 n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  181 (840)
                      |+|++. + .+..+++|+.|++++|. ..+ + ........+..+....|.+....+..................     
T Consensus        98 n~i~~i-~-~l~~l~~L~~L~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----  167 (384)
T d2omza2          98 NQIADI-T-PLANLTNLTGLTLFNNQ-ITD-I-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----  167 (384)
T ss_dssp             SCCCCC-G-GGTTCTTCCEEECCSSC-CCC-C-GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----
T ss_pred             cccccc-c-ccccccccccccccccc-ccc-c-ccccccccccccccccccccccccccccccccccccccccch-----
Confidence            999854 3 38889999999998886 222 2 234556778888888888875443333322222222222222     


Q ss_pred             chhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCccccccc
Q 003199          182 SSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCK  261 (840)
Q Consensus       182 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  261 (840)
                      ...+.............|...  ....+..+++++.+++++|.+++..|  +....+|+.|++.+|.+...  +.+..++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~  241 (384)
T d2omza2         168 LKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLT  241 (384)
T ss_dssp             CGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             hhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhccc
Confidence            234566777777888887765  44567788999999999999997654  45668899999999998753  4688999


Q ss_pred             CCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcC
Q 003199          262 NLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLS  341 (840)
Q Consensus       262 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  341 (840)
                      +|+.|++++|.+++..  .+..+++|+.|++++|++++..  .+..++.++.+.+++|++++.  ..+..+++++.|+++
T Consensus       242 ~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls  315 (384)
T d2omza2         242 NLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLY  315 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECC
T ss_pred             ccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECC
Confidence            9999999999998543  3788999999999999998654  377899999999999999853  457888999999999


Q ss_pred             CCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhcc-CCCeEEccCC
Q 003199          342 DNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCEL-LPNSINFSNN  414 (840)
Q Consensus       342 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~l~l~~N  414 (840)
                      +|++++..  .+..+++|+.|+|++|+|++ ++ .+..+++|++|+|++|+|++..|  +..+ .++.|++++|
T Consensus       316 ~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         316 FNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999754  38889999999999999984 44 68999999999999999997655  5666 6789999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=4.4e-26  Score=239.62  Aligned_cols=268  Identities=23%  Similarity=0.336  Sum_probs=143.8

Q ss_pred             ccEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeecc
Q 003199           70 LRIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMS  149 (840)
Q Consensus        70 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~  149 (840)
                      +++++-+++.++ .+|..+.  +++++|+|++|+|+...+..|.++++|++|++++|. +....|..|.++++|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEeccc
Confidence            445555555555 3454443  456667777776664444456666666666666665 333345556666666666666


Q ss_pred             CCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccC
Q 003199          150 VNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPL  229 (840)
Q Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  229 (840)
                      +|+++. +|..+  ...|+.|++.+|.+..+.+..+.....+..++...|......                        
T Consensus        88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~------------------------  140 (305)
T d1xkua_          88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG------------------------  140 (305)
T ss_dssp             SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG------------------------
T ss_pred             CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccC------------------------
Confidence            666663 33222  245666666666666555555555555555555555432110                        


Q ss_pred             CccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCC
Q 003199          230 PAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNAR  309 (840)
Q Consensus       230 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  309 (840)
                                            ..+..+..+++|+.+++++|.+. .+|..+  +++|+.|++++|.++...+..|..++
T Consensus       141 ----------------------~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~  195 (305)
T d1xkua_         141 ----------------------IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLN  195 (305)
T ss_dssp             ----------------------BCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             ----------------------CCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccc
Confidence                                  11122333344444444444443 223222  34455555555555555555555555


Q ss_pred             CCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchh------cccccCC
Q 003199          310 NLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNS------LSSLKSL  383 (840)
Q Consensus       310 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L  383 (840)
                      .++.|++++|.+++..+..+..+++|++|+|++|+|+ .+|.+|..+++|+.|+|++|+|+......      +..+.+|
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L  274 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  274 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCC
Confidence            5555555555555555555555556666666666655 34555556666666666666665432222      2345667


Q ss_pred             CEEECcCcccc
Q 003199          384 NVLDLSNNLLT  394 (840)
Q Consensus       384 ~~L~l~~N~l~  394 (840)
                      +.|+|++|+++
T Consensus       275 ~~L~L~~N~~~  285 (305)
T d1xkua_         275 SGVSLFSNPVQ  285 (305)
T ss_dssp             SEEECCSSSSC
T ss_pred             CEEECCCCcCc
Confidence            77777777764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=9.1e-26  Score=237.15  Aligned_cols=245  Identities=22%  Similarity=0.310  Sum_probs=141.6

Q ss_pred             CCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEE
Q 003199           18 NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDL   97 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   97 (840)
                      .++++|-++++++ .+|..+.  +++++|+|++|   ++..+++..|.++++|++|++++|.+....|..|.++++|++|
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N---~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L   84 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNN---KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL   84 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSS---CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCC---cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEe
Confidence            5678888888888 6676663  57888888888   6667776667777777777777777776666667777777777


Q ss_pred             EccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccc
Q 003199           98 ELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSL  177 (840)
Q Consensus        98 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  177 (840)
                      ++++|+|+ .+|..  ...                         .|..|++.+|.+....+..+.....+..++...|..
T Consensus        85 ~l~~n~l~-~l~~~--~~~-------------------------~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~  136 (305)
T d1xkua_          85 YLSKNQLK-ELPEK--MPK-------------------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL  136 (305)
T ss_dssp             ECCSSCCS-BCCSS--CCT-------------------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred             cccCCccC-cCccc--hhh-------------------------hhhhhhccccchhhhhhhhhhccccccccccccccc
Confidence            77777766 33322  123                         444455555555544444444555555555555543


Q ss_pred             c--cccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCc
Q 003199          178 S--GEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPD  255 (840)
Q Consensus       178 ~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  255 (840)
                      .  ...+..|..+++|+.+++++|.+.. ++..+  .++|+.|++++|.+++..+..|..+..++.|.+++|.+.+..+.
T Consensus       137 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~  213 (305)
T d1xkua_         137 KSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG  213 (305)
T ss_dssp             CGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             cccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccc
Confidence            2  2334456666666666666666653 33322  35666666666666544444333333333333333333334444


Q ss_pred             ccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCccccc
Q 003199          256 SLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGP  300 (840)
Q Consensus       256 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  300 (840)
                      .+..+++|++|+|++|+|+ .+|.+|..+++|+.|+|++|+|+.+
T Consensus       214 ~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         214 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             cccccccceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            5555555555555555555 3455555555555555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.5e-26  Score=235.45  Aligned_cols=253  Identities=21%  Similarity=0.212  Sum_probs=178.8

Q ss_pred             eeccCCcccccCCccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccc-ccc
Q 003199          146 LDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLS-ENK  224 (840)
Q Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~-~N~  224 (840)
                      ++.++++++ .+|..+.  +.+++|+|++|+|+.+.+..|.++++|++|++++|++..+.+..+..+..+..++.. .|.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            445555555 3343332  345666666666665555556666666666666666665555555555555555443 233


Q ss_pred             ccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcc
Q 003199          225 LSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANT  304 (840)
Q Consensus       225 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  304 (840)
                      ++                        ...+..|.++++|++|++++|.+....+..+...++|+.+++++|+++++.+..
T Consensus        93 ~~------------------------~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_          93 LR------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             CC------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cc------------------------cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhH
Confidence            33                        234556667777777777777776555666777788888888888888777788


Q ss_pred             cCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCC
Q 003199          305 VGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLN  384 (840)
Q Consensus       305 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  384 (840)
                      |..+++|+.|++++|++++..+..|..+++|+.+++++|++++..|..|.++++|+.|++++|++.+..+..|..+++|+
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            88888888888888888888788888888999999999999888888899999999999999999988888999999999


Q ss_pred             EEECcCccccccCCchhhccCCCeEEccCCCCcCcCCcccc
Q 003199          385 VLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIPLSLI  425 (840)
Q Consensus       385 ~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~p~~~~  425 (840)
                      +|+|++|++.+..+.......++.+....+.+.|..|..+.
T Consensus       229 ~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         229 YLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             EEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             EEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHc
Confidence            99999999987655322111234455566777777776543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9e-26  Score=234.37  Aligned_cols=268  Identities=18%  Similarity=0.150  Sum_probs=140.9

Q ss_pred             EEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEee-c
Q 003199           96 DLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLY-N  174 (840)
Q Consensus        96 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~  174 (840)
                      .++.+++.++ .+|..+.  +++++|+|++|+ +....+.+|.++++|++|++++|++..+.+..+..+..++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCc-CCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            3455555555 3443332  344555555554 222222344455555555555555544444444444444444432 3


Q ss_pred             cccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCC
Q 003199          175 NSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLP  254 (840)
Q Consensus       175 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  254 (840)
                      |.++.+.+..|.++++|++|++++|.+....+..+....+|+.+++++|+++                        ++.+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~------------------------~i~~  146 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ------------------------ALPD  146 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------CCCT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc------------------------ccCh
Confidence            3344444444444445555555554444333444444444444444444444                        3444


Q ss_pred             cccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCc
Q 003199          255 DSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAIS  334 (840)
Q Consensus       255 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  334 (840)
                      .+|..+++|+.|++++|++++..+..|..+++|+.+++++|++++..|..|..+++|++|++++|++.+..+..|..+++
T Consensus       147 ~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  226 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             hHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccc
Confidence            55666666666666666666555666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccc
Q 003199          335 LVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG  395 (840)
Q Consensus       335 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  395 (840)
                      |+.|+|++|++...-+ ...-...++.+....+++....|..+.+   ...++++.+.|+|
T Consensus       227 L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         227 LQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             CCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             cCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence            6666666666653221 1111233555566666666555555443   2333455555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=214.48  Aligned_cols=205  Identities=23%  Similarity=0.277  Sum_probs=181.9

Q ss_pred             CCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccC
Q 003199           11 PDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGN   90 (840)
Q Consensus        11 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   90 (840)
                      .+++....+.+.|.++++++ .+|..+.  ++|++|+|++|   .+..+++..|.++++|++|+|++|.|+.. | .++.
T Consensus         4 C~~~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N---~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~   75 (266)
T d1p9ag_           4 CEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSEN---LLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGT   75 (266)
T ss_dssp             SEEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTS---CCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSC
T ss_pred             cEEcccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCC---cCCCcCHHHhhcccccccccccccccccc-c-cccc
Confidence            34567778888999999999 6787664  58999999999   77888889999999999999999999854 3 4678


Q ss_pred             CCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEE
Q 003199           91 VTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVL  170 (840)
Q Consensus        91 l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  170 (840)
                      +++|++|+|++|+++ ..+..+..+++|+.|++++|. +....+..+..+.++++|++++|.++.+.+..+..+++|+.|
T Consensus        76 l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccccc-cceeeccccccccccccccccccccceeccccccccccchhc
Confidence            999999999999999 567889999999999999997 455556678889999999999999998888888899999999


Q ss_pred             EeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccc
Q 003199          171 QLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       171 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      ++++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++.
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            99999999998899999999999999999999 67888888999999999999886

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.1e-23  Score=212.55  Aligned_cols=203  Identities=22%  Similarity=0.280  Sum_probs=156.6

Q ss_pred             CCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhh
Q 003199          163 RLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYF  242 (840)
Q Consensus       163 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  242 (840)
                      ....+.+.+.+++.|+.+ |..+  .++|++|+|++|+|+++.+..|.++++|++|+|++|+|+.               
T Consensus         8 ~~~~~~~v~C~~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~---------------   69 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---------------   69 (266)
T ss_dssp             CSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE---------------
T ss_pred             ccCCCeEEEccCCCCCee-CcCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc---------------
Confidence            344555667777777643 3322  1456777777777765555566666777777777766652               


Q ss_pred             hcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceee
Q 003199          243 LVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQIS  322 (840)
Q Consensus       243 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  322 (840)
                                ++ .++.+++|++|++++|+++ ..+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.++
T Consensus        70 ----------l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          70 ----------LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             ----------EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             ----------cc-ccccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccc
Confidence                      22 2456788899999999988 56777888899999999999998888888888899999999999998


Q ss_pred             eccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCcccccc
Q 003199          323 GFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGY  396 (840)
Q Consensus       323 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  396 (840)
                      ...+..+..+++|+.|++++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++.+.
T Consensus       138 ~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             eeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            777777788889999999999998877788888999999999999998 6777777888999999999988754

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=4.2e-23  Score=199.91  Aligned_cols=179  Identities=15%  Similarity=0.144  Sum_probs=123.1

Q ss_pred             CccCeeeccCCcEEEEEEeCCCcEEEEEEeccccccccc--------CchhhHHHHHHHHHHHHHHhccCCCCcceeeeE
Q 003199          529 TEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSA--------SDTDQLQLDKGLKTEVETLGNIRHKNIVKLYCY  600 (840)
Q Consensus       529 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~--------~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  600 (840)
                      ...++||+|+||+||+|...+|+.||||+++........        ..............|+..+.++.|.+++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            356789999999999998888999999987543221100        001112234556778999999999999988765


Q ss_pred             EecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCCEEEcCCCCCeeecc
Q 003199          601 FSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGLLSPIIHRDIKSTNILLDVNYQPKVADF  680 (840)
Q Consensus       601 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df  680 (840)
                      .    ..++||||++++.+.        .+++.....++.|++.|++|||+   ++|+||||||+|||+++++ ++++||
T Consensus        83 ~----~~~lvme~~~~~~~~--------~l~~~~~~~i~~ql~~~l~~lH~---~giiHrDiKP~NILv~~~~-~~liDF  146 (191)
T d1zara2          83 E----GNAVLMELIDAKELY--------RVRVENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVSEEG-IWIIDF  146 (191)
T ss_dssp             E----TTEEEEECCCCEEGG--------GCCCSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEETTE-EEECCC
T ss_pred             c----CCEEEEEeecccccc--------chhhHHHHHHHHHHHHHHHHHhh---CCEEEccCChhheeeeCCC-EEEEEC
Confidence            3    247999999876543        24556678899999999999999   9999999999999999764 899999


Q ss_pred             cchhhhhccCCCCcceecccccccccCccccccCCCCccccchhHHHHH
Q 003199          681 GIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVL  729 (840)
Q Consensus       681 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il  729 (840)
                      |.|.....+..    ......+... -.+ ...+.|..++|+||..--+
T Consensus       147 G~a~~~~~~~~----~~~l~rd~~~-~~~-~f~r~y~~~~d~~s~~~~~  189 (191)
T d1zara2         147 PQSVEVGEEGW----REILERDVRN-IIT-YFSRTYRTEKDINSAIDRI  189 (191)
T ss_dssp             TTCEETTSTTH----HHHHHHHHHH-HHH-HHHHHHCCCCCHHHHHHHH
T ss_pred             CCcccCCCCCc----HHHHHHHHHH-HHH-HHcCCCCCcccHHHHHHHH
Confidence            99876532110    0000000000 001 1235678899999975433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.86  E-value=5.9e-20  Score=196.52  Aligned_cols=304  Identities=24%  Similarity=0.285  Sum_probs=192.6

Q ss_pred             CCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           17 QNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        17 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      .+|++|||++|+++ .+|+.   +++|++|+|++|   +|+++|..    +.+|+.|++++|.++. ++. +  .+.|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N---~l~~lp~~----~~~L~~L~l~~n~l~~-l~~-l--p~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCN---SLTELPEL----PQSLKSLLVDNNNLKA-LSD-L--PPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSS---CCSSCCCC----CTTCCEEECCSSCCSC-CCS-C--CTTCCE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCC---CCcccccc----hhhhhhhhhhhcccch-hhh-h--cccccc
Confidence            36899999999998 67864   578999999999   66666642    4678888999998873 232 1  135889


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccc
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNS  176 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  176 (840)
                      |+|++|.+. .+|. +..+++|+.|++++|.  ....+.   ....+..+.+..+....  ...+..++.++.|++++|.
T Consensus       103 L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~--~~~~~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         103 LGVSNNQLE-KLPE-LQNSSFLKIIDVDNNS--LKKLPD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EECCSSCCS-SCCC-CTTCTTCCEEECCSSC--CSCCCC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccc-hhhhccceeecccccc--cccccc---ccccccchhhccccccc--cccccccccceeccccccc
Confidence            999999988 4553 5778889999988876  223332   34567777777776652  3457778888888888888


Q ss_pred             cccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcc
Q 003199          177 LSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDS  256 (840)
Q Consensus       177 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  256 (840)
                      +.....    .....+.+...++.+. .. ..+..++.|+.+++++|..... +.                         
T Consensus       174 ~~~~~~----~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~~~-~~-------------------------  221 (353)
T d1jl5a_         174 LKKLPD----LPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLKTL-PD-------------------------  221 (353)
T ss_dssp             CSSCCC----CCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCSSC-CS-------------------------
T ss_pred             cccccc----cccccccccccccccc-cc-cccccccccccccccccccccc-cc-------------------------
Confidence            764322    2234566777766665 23 3456677888888888776521 11                         


Q ss_pred             cccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCccc
Q 003199          257 LARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLV  336 (840)
Q Consensus       257 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  336 (840)
                        ...++..+.+.+|.+. ..+.   ....+...++..+.+.+...    -.......++..|.+.+. +   ..+++|+
T Consensus       222 --~~~~l~~~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~-~---~~~~~L~  287 (353)
T d1jl5a_         222 --LPPSLEALNVRDNYLT-DLPE---LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C---DLPPSLE  287 (353)
T ss_dssp             --CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C---CCCTTCC
T ss_pred             --cccccccccccccccc-cccc---cccccccccccccccccccc----ccchhcccccccCccccc-c---ccCCCCC
Confidence              1234555666666654 2222   22345555555554442111    012344555666655532 1   2245677


Q ss_pred             EEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCc
Q 003199          337 KIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPE  399 (840)
Q Consensus       337 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  399 (840)
                      +|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|..   +++|++|+|++|+|+ .+|.
T Consensus       288 ~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         288 ELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             EEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             EEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            7777777777 45543   456777777777776 45532   456777788888777 4553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=4.7e-19  Score=189.36  Aligned_cols=306  Identities=25%  Similarity=0.276  Sum_probs=206.4

Q ss_pred             ccccccccCCCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccc
Q 003199            2 SFMYLTGTLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALH   81 (840)
Q Consensus         2 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~   81 (840)
                      +.+.++ .+|++  .++|++|+|++|+|+ .+|..   +.+|+.|++++|.+..+..+|       +.|++|++++|.+.
T Consensus        46 s~~~L~-~lp~~--~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~lp-------~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          46 NNLGLS-SLPEL--PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQLE  111 (353)
T ss_dssp             TTSCCS-CCCSC--CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCSCC-------TTCCEEECCSSCCS
T ss_pred             CCCCCC-CCCCC--CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhhhc-------cccccccccccccc
Confidence            344554 46763  579999999999999 77865   468999999999666555443       46999999999998


Q ss_pred             ccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccc
Q 003199           82 GQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESI  161 (840)
Q Consensus        82 ~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  161 (840)
                      . +|. ++.+++|++|++++|.+.. .+.   ....+..+.+..+..   .....+..++.++.|++++|.+.. .+.  
T Consensus       112 ~-lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~---~~~~~l~~l~~l~~L~l~~n~~~~-~~~--  179 (353)
T d1jl5a_         112 K-LPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQL---EELPELQNLPFLTAIYADNNSLKK-LPD--  179 (353)
T ss_dssp             S-CCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC---SSCCCCTTCTTCCEEECCSSCCSS-CCC--
T ss_pred             c-ccc-hhhhccceeeccccccccc-ccc---ccccccchhhccccc---cccccccccccceecccccccccc-ccc--
Confidence            4 554 6889999999999999983 333   346677888876652   234567889999999999999884 332  


Q ss_pred             cCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchh
Q 003199          162 LRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQY  241 (840)
Q Consensus       162 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  241 (840)
                       .....+.+...++.+...  ..+..++.|+.+++++|.... .+.   ...++..+.+.+|.+.... .          
T Consensus       180 -~~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~-~----------  241 (353)
T d1jl5a_         180 -LPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLP-E----------  241 (353)
T ss_dssp             -CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCC-C----------
T ss_pred             -cccccccccccccccccc--ccccccccccccccccccccc-ccc---ccccccccccccccccccc-c----------
Confidence             233456777777777632  246789999999999999873 343   3456788888888776321 1          


Q ss_pred             hhcccccccccCCcccccccCCceEEeeCceeeccCCccccCC-CcccEEeccCCcccccCCcccCCCCCCceeecccce
Q 003199          242 FLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSL-PHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQ  320 (840)
Q Consensus       242 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  320 (840)
                                       ..+++...++..+.+.+     +..+ ......++..|.+.+.    ...+++|++|+|++|+
T Consensus       242 -----------------~~~~l~~~~~~~~~~~~-----l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~  295 (353)
T d1jl5a_         242 -----------------LPQSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNK  295 (353)
T ss_dssp             -----------------CCTTCCEEECCSSCCSE-----ESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSC
T ss_pred             -----------------ccccccccccccccccc-----cccccchhcccccccCccccc----cccCCCCCEEECCCCc
Confidence                             11233444444444331     1111 2334455566655532    2235677888888887


Q ss_pred             eeeccchhhcccCcccEEEcCCCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECc
Q 003199          321 ISGFIPSEIYRAISLVKIDLSDNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLS  389 (840)
Q Consensus       321 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  389 (840)
                      |+ .+|..   +++|+.|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|...   .+|+.|.+.
T Consensus       296 l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         296 LI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             CS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred             cC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeECc
Confidence            77 44533   467888888888887 45643   456888888888887 556532   356666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.1e-19  Score=179.89  Aligned_cols=220  Identities=15%  Similarity=0.072  Sum_probs=155.9

Q ss_pred             CCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccC-CccccCCCCCcEE
Q 003199           19 LRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQI-PASIGNVTSLTDL   97 (840)
Q Consensus        19 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L   97 (840)
                      .++++.++++++ .+|..+.  +++++|+|++|   .+..++...|.++++|++|++++|.+...+ +.+|.+++++++|
T Consensus        10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n---~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLT---KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCSC--SCCSEEEEESC---CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCC---cCCccChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            367888888888 7776553  57889999998   677778888888889999999888886543 4578888888888


Q ss_pred             Ecc-CCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCC-CCcEEEeecc
Q 003199           98 ELT-GNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLP-KLRVLQLYNN  175 (840)
Q Consensus        98 ~L~-~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N  175 (840)
                      .+. .|.+....+..|..+++|+.|++++|++........+..++.+..+...++.+..+.+..|.+++ .++.|++++|
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             cccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence            775 46777677778888888888888888732222222344556666667777777766667777664 6788888888


Q ss_pred             ccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhc
Q 003199          176 SLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLV  244 (840)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  244 (840)
                      +++.+....|....-++.+++++|+++.+.+..|.++++|++|+|++|+|+...+..|.++.+|+++++
T Consensus       164 ~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         164 GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            888666655544333334456777888655666788888888888888887554444555555554443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.8e-19  Score=176.48  Aligned_cols=218  Identities=15%  Similarity=0.145  Sum_probs=107.8

Q ss_pred             cEEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccC
Q 003199           71 RIMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSV  150 (840)
Q Consensus        71 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~  150 (840)
                      +.++.++..++ .+|+.+.  +++++|+|++|+|+...+..|.++++|++|+|++|.......+..|.+++++++|.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34455555554 3443332  35666666666666444445666666666666666522222233456666666666543


Q ss_pred             -CcccccCCccccCCCCCcEEEeeccccccccc-hhhhcCCCCCEEEccCCcCcccCCcCCCCCC-Ccceeccccccccc
Q 003199          151 -NHLSGKIPESILRLPKLRVLQLYNNSLSGEIS-SVIANSTTLTMLSLYDNSLTGEVPQDLGQWS-PLVVLDLSENKLSG  227 (840)
Q Consensus       151 -n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~  227 (840)
                       |++....+..|.++++|++|++++|.+....+ ..+..+..+..+..+++++..+.+..|.+++ .++.|++++|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             45555555666666666666666666653322 2233445555555566666655555555543 56666666666664


Q ss_pred             cCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEe
Q 003199          228 PLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIID  291 (840)
Q Consensus       228 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  291 (840)
                      ..+..|......+.+.+.+|.+....++.|.++++|++|++++|+|+...+..|.++++|+.++
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            3332222111111222233333333333444445555555555554432233344444444433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=2e-19  Score=173.86  Aligned_cols=177  Identities=19%  Similarity=0.235  Sum_probs=139.8

Q ss_pred             CceEEeeCceeeccCCccccCCCcccEEeccCCcccc-cCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcC
Q 003199          263 LLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSG-PIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLS  341 (840)
Q Consensus       263 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  341 (840)
                      .+.++.++++++ .+|..+.  +++++|+|++|+|+. ..+..|..+++|+.|+|++|++....+..+..+++|+.|+|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            356888888888 6777663  688899999999975 456778889999999999999998888888889999999999


Q ss_pred             CCccCCCCCCcccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccccCCchhhccCCCeEEccCCCCcCcCC
Q 003199          342 DNLLSGPIPSGIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTGYIPESLCELLPNSINFSNNRLSGPIP  421 (840)
Q Consensus       342 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~l~l~~N~l~~~~p  421 (840)
                      +|+|++..|.+|.++++|+.|+|++|+|++..+.+|..+++|++|+|++|++.+..+..+....+..+.+..|.+.+..|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            99999877888999999999999999999888888999999999999999998655433322223455677788888777


Q ss_pred             cccccCCCcccccCCCCCcccc
Q 003199          422 LSLIKEGLVESFSGNPGLCVSV  443 (840)
Q Consensus       422 ~~~~~~~~~~~~~~n~~~c~~~  443 (840)
                      ..+... ....+..|...|...
T Consensus       167 ~~l~~~-~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         167 SKVRDV-QIKDLPHSEFKCSSE  187 (192)
T ss_dssp             TTTTTS-BGGGSCTTTCCCCCC
T ss_pred             hhhcCC-EeeecCHhhCcCCCC
Confidence            655433 445667777777543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=5.2e-19  Score=176.12  Aligned_cols=187  Identities=23%  Similarity=0.327  Sum_probs=100.1

Q ss_pred             CEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEc
Q 003199           20 RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLEL   99 (840)
Q Consensus        20 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   99 (840)
                      ..++++.+.+++..  .+..+.+|+.|++.+|   .+.+++  .+..+++|++|++++|.+++..|  +..+++|++|++
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~---~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGT---GVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTS---CCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCC---CCCcch--hHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence            34555556555432  3445566666666666   344442  25566666666666666654322  566666666666


Q ss_pred             cCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecccccc
Q 003199          100 TGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLSG  179 (840)
Q Consensus       100 ~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  179 (840)
                      ++|.++. ++ .+..+++|+.++++.+. ..+  ...+...+.+..+.++.+.+...  ..+..+++|+.|++++|.+.+
T Consensus        93 ~~n~~~~-i~-~l~~l~~L~~l~l~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2          93 SGNPLKN-VS-AIAGLQSIKTLDLTSTQ-ITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             CSCCCSC-CG-GGTTCTTCCEEECTTSC-CCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred             ccccccc-cc-ccccccccccccccccc-ccc--cchhccccchhhhhchhhhhchh--hhhcccccccccccccccccc
Confidence            6666652 22 35556666666666554 111  12344555566666666555532  234555556666666665543


Q ss_pred             ccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccccccc
Q 003199          180 EISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLS  226 (840)
Q Consensus       180 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  226 (840)
                      ..  .+.++++|++|+|++|+++++  ..+.++++|++|+|++|+++
T Consensus       166 ~~--~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         166 LT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCC
T ss_pred             ch--hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence            22  255556666666666665532  12555555666666655555

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.2e-18  Score=170.26  Aligned_cols=191  Identities=25%  Similarity=0.304  Sum_probs=160.5

Q ss_pred             CCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCC
Q 003199           12 DFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNV   91 (840)
Q Consensus        12 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   91 (840)
                      .++.+.+|+.|++++|+|+ .++ .+..+++|++|++++|   .+..+.  .+..+++|+.+++++|.++..  +.+..+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n---~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l  106 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDN---QITDLA--PLKNLTKITELELSGNPLKNV--SAIAGL  106 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSS---CCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTC
T ss_pred             CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCc---eeeccc--ccccccccccccccccccccc--cccccc
Confidence            3466889999999999999 454 5899999999999999   555544  389999999999999998743  468899


Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEE
Q 003199           92 TSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQ  171 (840)
Q Consensus        92 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (840)
                      ++|+.|++++|...+.  ..+...+.++.+.++.+. +..  ...+...++|++|++++|.+...  ..+.++++|+.|+
T Consensus       107 ~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~  179 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQ-ITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLK  179 (227)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSC-CCC--CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             cccccccccccccccc--chhccccchhhhhchhhh-hch--hhhhccccccccccccccccccc--hhhcccccceecc
Confidence            9999999999998743  457888999999998886 222  23477889999999999999853  3488999999999


Q ss_pred             eeccccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccc
Q 003199          172 LYNNSLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSE  222 (840)
Q Consensus       172 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~  222 (840)
                      |++|+++++.  .+.++++|++|+|++|+++++.  .+.++++|+.|++++
T Consensus       180 Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         180 ADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             cCCCccCCCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            9999998653  4899999999999999999653  388999999999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.9e-21  Score=216.31  Aligned_cols=379  Identities=19%  Similarity=0.187  Sum_probs=192.2

Q ss_pred             CCCEEecCCCcCccc-CCccccCCCCCCEEeCCCCCCCccCCCC----cccccccccccEEEecCcccccc----CCccc
Q 003199           18 NLRRLDLSNNLFTGQ-FPLSVFNLTNLEVLSFNENPGFKLWKLP----ESSIFRLTKLRIMVLATCALHGQ----IPASI   88 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~L~~N~~~~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~   88 (840)
                      +|++||++.|+|++. +...+..+++|+.|+|++|.   +++..    ...+..+++|++|+|++|.|+..    +...+
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~---i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG---LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC---CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC---CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            578899999998843 24456678888888888883   33211    12356677888888888877521    22223


Q ss_pred             c-CCCCCcEEEccCCccccc----CchhhhcCCCCCeeecccCccccccC----Cccc-CCCCCCCeeeccCCcccccC-
Q 003199           89 G-NVTSLTDLELTGNFITGH----IPPEIGLLKNLRQLELYYNQQLAGTI----PEEL-GNLTELTDLDMSVNHLSGKI-  157 (840)
Q Consensus        89 ~-~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~~~~~~~----p~~l-~~l~~L~~L~L~~n~l~~~~-  157 (840)
                      . ...+|++|+|++|+|++.    ++..+..+++|++|+|++|.+ ....    ...+ ........+......+.... 
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccc-hhhhhhhhhhcccccccccccccccccccchhhh
Confidence            2 234688888888888743    345566777888888887762 2110    1111 11223333444333332111 


Q ss_pred             ---CccccCCCCCcEEEeeccccccccch----hh-hcCCCCCEEEccCCcCcccC----CcCCCCCCCcceeccccccc
Q 003199          158 ---PESILRLPKLRVLQLYNNSLSGEISS----VI-ANSTTLTMLSLYDNSLTGEV----PQDLGQWSPLVVLDLSENKL  225 (840)
Q Consensus       158 ---~~~~~~l~~L~~L~L~~N~l~~~~~~----~~-~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~L~~N~l  225 (840)
                         ...+.....++.++++++.+......    .+ ........+++..+.+....    ...+...+.++.+++++|++
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence               11223345667777776665422111    11 22334556666666554211    11223345566666666655


Q ss_pred             cccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCceeeccC----CccccCCCcccEEeccCCcccccC
Q 003199          226 SGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSI----PEGILSLPHVSIIDLSYNSFSGPI  301 (840)
Q Consensus       226 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~  301 (840)
                      ......                   ......+.....++.+++++|.+....    ...+...+.++.+++++|.+++..
T Consensus       239 ~~~~~~-------------------~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~  299 (460)
T d1z7xw1         239 GDVGMA-------------------ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  299 (460)
T ss_dssp             HHHHHH-------------------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             cccccc-------------------hhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            321000                   011112223345555555555554211    112233455556666666554321


Q ss_pred             Ccc-----cCCCCCCceeecccceeeeccchh----hcccCcccEEEcCCCccCCC----CCCccc-CccccchhcccCC
Q 003199          302 ANT-----VGNARNLSELFMQRNQISGFIPSE----IYRAISLVKIDLSDNLLSGP----IPSGIG-NLKKLNLLMLQSN  367 (840)
Q Consensus       302 ~~~-----~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N  367 (840)
                      ...     ......|+.+++++|.++......    +....+|++|+|++|++++.    ++..+. ..+.|+.|+|++|
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n  379 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  379 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC
Confidence            111     112345666666666665432222    23334566666666666432    122221 2445666677766


Q ss_pred             ccCCC----cchhcccccCCCEEECcCccccccCCchhhc------cCCCeEEccCCCCcCc
Q 003199          368 KLNSS----IPNSLSSLKSLNVLDLSNNLLTGYIPESLCE------LLPNSINFSNNRLSGP  419 (840)
Q Consensus       368 ~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~------~~~~~l~l~~N~l~~~  419 (840)
                      +|+..    +...+..+++|++|||++|+|+......+..      ..++.+++.+|.+...
T Consensus       380 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         380 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            66532    2334555566777777777666433333321      1345666666666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=2.3e-18  Score=166.29  Aligned_cols=174  Identities=20%  Similarity=0.242  Sum_probs=99.2

Q ss_pred             CEEEccCCcCcccCCcCCCCCCCcceeccccccccccCCccccCCCCchhhhcccccccccCCcccccccCCceEEeeCc
Q 003199          192 TMLSLYDNSLTGEVPQDLGQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNN  271 (840)
Q Consensus       192 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N  271 (840)
                      ++++.++++++ .+|..+.  +++++|+|++|+|++.                       ..+..|..+++|+.|+|++|
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~-----------------------~~~~~f~~l~~L~~L~L~~N   64 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRI-----------------------SSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSB-----------------------CCSCSGGGCTTCCEEECCSS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCccc-----------------------ccccccCCCceEeeeecccc
Confidence            35556666665 3444332  3566666666666532                       12334555666666666666


Q ss_pred             eeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecccceeeeccchhhcccCcccEEEcCCCccCCCCCC
Q 003199          272 HLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQRNQISGFIPSEIYRAISLVKIDLSDNLLSGPIPS  351 (840)
Q Consensus       272 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  351 (840)
                      .+....+..|..+++|+.|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|.+.... .
T Consensus        65 ~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~  143 (192)
T d1w8aa_          65 QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-H  143 (192)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-G
T ss_pred             ccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-c
Confidence            666555566666666666666666666666666666666666666666666655666666666666666666665322 1


Q ss_pred             cccCccccchhcccCCccCCCcchhcccccCCCEEECcCccccc
Q 003199          352 GIGNLKKLNLLMLQSNKLNSSIPNSLSSLKSLNVLDLSNNLLTG  395 (840)
Q Consensus       352 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  395 (840)
                      ...-...++.+.+..|.++...|..+   ..++.++|+.|.|+.
T Consensus       144 ~~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         144 LAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             GHHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCC
T ss_pred             hHHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcC
Confidence            11112345566666666665555433   344555666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=8.4e-18  Score=164.67  Aligned_cols=184  Identities=24%  Similarity=0.274  Sum_probs=122.4

Q ss_pred             CCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEE
Q 003199           19 LRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLE   98 (840)
Q Consensus        19 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   98 (840)
                      +....++.+.+++.++.  ..+.+|++|++++|   .+..++  .+..+++|++|+|++|.+++..  .++.+++|++|+
T Consensus        26 ~i~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~---~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~   96 (210)
T d1h6ta2          26 TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNS---DIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLF   96 (210)
T ss_dssp             HHHHHTTCSCTTSEECH--HHHHTCCEEECTTS---CCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             HHHHHhCcCccCCccCH--HHhcCccEEECcCC---CCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccc
Confidence            33445666666644442  34667777788777   444443  3667777777777777776532  356777788888


Q ss_pred             ccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeeccccc
Q 003199           99 LTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNNSLS  178 (840)
Q Consensus        99 L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  178 (840)
                      +++|+|++ +| .+..+++|+.|++++|.  ...+ ..+..+++|+.+++++|.+++  +..+..+++|+++++++|+++
T Consensus        97 l~~n~i~~-l~-~l~~l~~L~~L~l~~~~--~~~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2          97 LDENKVKD-LS-SLKDLKKLKSLSLEHNG--ISDI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             CCSSCCCC-GG-GGTTCTTCCEEECTTSC--CCCC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred             cccccccc-cc-ccccccccccccccccc--cccc-ccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            88887773 33 47777777777777775  2222 356677777777777777763  234666777777777777777


Q ss_pred             cccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCcceecccc
Q 003199          179 GEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVLDLSE  222 (840)
Q Consensus       179 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~  222 (840)
                      ++.  .+.++++|++|+|++|+|+. ++ .+.++++|++|+|++
T Consensus       170 ~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         170 DIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            543  36777777777777777774 33 477777777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.9e-18  Score=166.54  Aligned_cols=183  Identities=25%  Similarity=0.321  Sum_probs=115.4

Q ss_pred             CCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCc
Q 003199           16 MQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLT   95 (840)
Q Consensus        16 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   95 (840)
                      +.++..+.++.+.+++.++  ...+.+|+.|++++|.   +.+++  .+..+++|++|++++|.+++..|  ++++++|+
T Consensus        17 l~~~i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~---i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~   87 (199)
T d2omxa2          17 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG---IKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLV   87 (199)
T ss_dssp             HHHHHHHHTTCSSTTSEEC--HHHHTTCCEEECTTSC---CCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             HHHHHHHHhCCCCCCCccC--HHHhcCCCEEECCCCC---CCCcc--ccccCCCcCcCccccccccCccc--ccCCcccc
Confidence            3444456677777764433  3456778888888883   44432  36667777777777777764432  67777777


Q ss_pred             EEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecc
Q 003199           96 DLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN  175 (840)
Q Consensus        96 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  175 (840)
                      +|++++|.+.. ++ .+..+++|+.|++++|.. . . ...+..+++|+.|++++|++.. + ..+..+++|+.|++++|
T Consensus        88 ~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~-~-~-~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n  160 (199)
T d2omxa2          88 DILMNNNQIAD-IT-PLANLTNLTGLTLFNNQI-T-D-IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSN  160 (199)
T ss_dssp             EEECCSSCCCC-CG-GGTTCTTCSEEECCSSCC-C-C-CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSS
T ss_pred             ccccccccccc-cc-cccccccccccccccccc-c-c-ccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccc
Confidence            77777777763 33 366777777777776652 1 1 2346667777777777777663 2 24666777777777777


Q ss_pred             ccccccchhhhcCCCCCEEEccCCcCcccCCcCCCCCCCccee
Q 003199          176 SLSGEISSVIANSTTLTMLSLYDNSLTGEVPQDLGQWSPLVVL  218 (840)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  218 (840)
                      ++++..  .+.++++|++|++++|+++++  +.++++++|++|
T Consensus       161 ~l~~l~--~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         161 QVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cccCCc--cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            776442  366677777777777776642  235566666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-20  Score=208.16  Aligned_cols=353  Identities=18%  Similarity=0.176  Sum_probs=203.5

Q ss_pred             CCCEEeCCCCCCCccCCCC-cccccccccccEEEecCccccc----cCCccccCCCCCcEEEccCCcccccCchhhh---
Q 003199           42 NLEVLSFNENPGFKLWKLP-ESSIFRLTKLRIMVLATCALHG----QIPASIGNVTSLTDLELTGNFITGHIPPEIG---  113 (840)
Q Consensus        42 ~L~~L~L~~N~~~~l~~l~-~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~---  113 (840)
                      +|+.||+++|   ++.+.. ...+..+++|++|+|++|.++.    .++..+..+++|++|+|++|.|++.....+.   
T Consensus         3 ~l~~ld~~~~---~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCE---ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESC---CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCC---cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            5777888887   443322 2235567777777777777762    2344556677777777777777632211221   


Q ss_pred             -c-CCCCCeeecccCccccc----cCCcccCCCCCCCeeeccCCcccccCCccc----c-CCCCCcEEEeeccccccc--
Q 003199          114 -L-LKNLRQLELYYNQQLAG----TIPEELGNLTELTDLDMSVNHLSGKIPESI----L-RLPKLRVLQLYNNSLSGE--  180 (840)
Q Consensus       114 -~-l~~L~~L~L~~n~~~~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~L~~N~l~~~--  180 (840)
                       . ..+|++|+|++|+ +.+    .++..+..+++|++|+|++|.++......+    . .......+......+...  
T Consensus        80 ~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence             1 2356666666665 221    123445566666666666666653211111    1 112233333333333211  


Q ss_pred             --cchhhhcCCCCCEEEccCCcCcccCCc----CC-CCCCCcceeccccccccccCCccccCCCCchhhhcccccccccC
Q 003199          181 --ISSVIANSTTLTMLSLYDNSLTGEVPQ----DL-GQWSPLVVLDLSENKLSGPLPAKVCSRGKLQYFLVLQNMFSGVL  253 (840)
Q Consensus       181 --~~~~~~~l~~L~~L~L~~N~l~~~~~~----~l-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  253 (840)
                        ....+.....++.++++++.+......    .+ ........+++..+.+.....                    ...
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~--------------------~~~  218 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--------------------RDL  218 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--------------------HHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhh--------------------hcc
Confidence              112233445666666665554411000    00 011122334444333321000                    011


Q ss_pred             CcccccccCCceEEeeCceeec-----cCCccccCCCcccEEeccCCcccccC----CcccCCCCCCceeecccceeeec
Q 003199          254 PDSLARCKNLLRFRVSNNHLEG-----SIPEGILSLPHVSIIDLSYNSFSGPI----ANTVGNARNLSELFMQRNQISGF  324 (840)
Q Consensus       254 ~~~~~~l~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~  324 (840)
                      ...+...+.++.+++++|.+..     ..+........++.+++++|.+....    ...+...+.++.+++++|.++..
T Consensus       219 ~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~  298 (460)
T d1z7xw1         219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  298 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             cccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1234566789999999998742     22334445778999999999987432    23445688999999999999754


Q ss_pred             cchhhc-----ccCcccEEEcCCCccCCCCCCcc----cCccccchhcccCCccCCC----cchhcc-cccCCCEEECcC
Q 003199          325 IPSEIY-----RAISLVKIDLSDNLLSGPIPSGI----GNLKKLNLLMLQSNKLNSS----IPNSLS-SLKSLNVLDLSN  390 (840)
Q Consensus       325 ~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~N~l~~~----~~~~~~-~l~~L~~L~l~~  390 (840)
                      ....+.     ....|+.+++++|.++......+    ...++|+.|+|++|+|++.    ++..+. ..+.|++|+|++
T Consensus       299 ~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~  378 (460)
T d1z7xw1         299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  378 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCC
Confidence            333322     34579999999999975433333    3456899999999999753    333343 467799999999


Q ss_pred             cccccc----CCchhhcc-CCCeEEccCCCCcC
Q 003199          391 NLLTGY----IPESLCEL-LPNSINFSNNRLSG  418 (840)
Q Consensus       391 N~l~~~----~p~~~~~~-~~~~l~l~~N~l~~  418 (840)
                      |.|+..    ++..+... .++.|++++|+++.
T Consensus       379 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         379 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            999853    33333332 57899999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=4.5e-17  Score=158.02  Aligned_cols=163  Identities=29%  Similarity=0.376  Sum_probs=138.8

Q ss_pred             CCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCC
Q 003199           14 SPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTS   93 (840)
Q Consensus        14 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   93 (840)
                      ..+++|++|++++|.|+ .++ .+..+++|++|+|++|   ++..+++  +.++++|+.|++++|.+... + .+.++++
T Consensus        37 ~~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N---~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~  107 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN---QLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTN  107 (199)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSS---CCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTT
T ss_pred             HHhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccc---cccCccc--ccCCcccccccccccccccc-c-ccccccc
Confidence            45789999999999999 443 4889999999999999   5666654  89999999999999998743 3 4889999


Q ss_pred             CcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEee
Q 003199           94 LTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLY  173 (840)
Q Consensus        94 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  173 (840)
                      |+.|++++|.+...  ..+..+++|+.|++++|+ + ..+ +.+..+++|++|++++|++++.  ..+.++++|++|+++
T Consensus       108 L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~-l-~~~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls  180 (199)
T d2omxa2         108 LTGLTLFNNQITDI--DPLKNLTNLNRLELSSNT-I-SDI-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDIS  180 (199)
T ss_dssp             CSEEECCSSCCCCC--GGGTTCTTCSEEECCSSC-C-CCC-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred             cccccccccccccc--cccchhhhhHHhhhhhhh-h-ccc-ccccccccccccccccccccCC--ccccCCCCCCEEECC
Confidence            99999999999843  458899999999999997 2 333 4688999999999999999964  358999999999999


Q ss_pred             ccccccccchhhhcCCCCCEE
Q 003199          174 NNSLSGEISSVIANSTTLTML  194 (840)
Q Consensus       174 ~N~l~~~~~~~~~~l~~L~~L  194 (840)
                      +|+++++  +.++++++|++|
T Consensus       181 ~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         181 SNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             SSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCCCCC--ccccCCCCCCcC
Confidence            9999864  358899999986

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.7e-17  Score=160.04  Aligned_cols=166  Identities=25%  Similarity=0.323  Sum_probs=141.2

Q ss_pred             CCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCC
Q 003199           15 PMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSL   94 (840)
Q Consensus        15 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   94 (840)
                      .+.+|++|++++|.|+. ++ .+..+++|++|+|++|   ++..++  .+..+++|++|++++|.+++. | .+..+++|
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n---~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L  114 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGN---KLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKL  114 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS---CCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTC
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCc---cccCcc--ccccCcccccccccccccccc-c-cccccccc
Confidence            47789999999999994 44 3889999999999999   566655  378899999999999999853 3 58899999


Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeec
Q 003199           95 TDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYN  174 (840)
Q Consensus        95 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  174 (840)
                      +.|++++|.+.. + ..+..+++|+.++++.|. +.+  +..+..+++|+++++++|++++..  .+.++++|++|+|++
T Consensus       115 ~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~-l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         115 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNK-ITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSK  187 (210)
T ss_dssp             CEEECTTSCCCC-C-GGGGGCTTCCEEECCSSC-CCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred             cccccccccccc-c-cccccccccccccccccc-ccc--cccccccccccccccccccccccc--cccCCCCCCEEECCC
Confidence            999999999983 3 468999999999999997 322  345778999999999999999643  488999999999999


Q ss_pred             cccccccchhhhcCCCCCEEEccC
Q 003199          175 NSLSGEISSVIANSTTLTMLSLYD  198 (840)
Q Consensus       175 N~l~~~~~~~~~~l~~L~~L~L~~  198 (840)
                      |+|+++ + .+.++++|++|+|++
T Consensus       188 N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         188 NHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             CCCCCC-h-hhcCCCCCCEEEccC
Confidence            999864 3 589999999999974

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.2e-15  Score=138.69  Aligned_cols=132  Identities=21%  Similarity=0.261  Sum_probs=72.4

Q ss_pred             cCCCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccc
Q 003199            9 TLPDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASI   88 (840)
Q Consensus         9 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   88 (840)
                      ..|.|.++.+|++|+|++|+|+ .++..+..+++|+.|+|++|   .|.+++  .|..+++|++|++++|.++...+..+
T Consensus        10 ~~~~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N---~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~   83 (162)
T d1a9na_          10 QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN---EIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLD   83 (162)
T ss_dssp             TSCEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSS---CCCEEC--CCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             hhHhccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCC---CCCccC--CcccCcchhhhhcccccccCCCcccc
Confidence            3456667777777777777777 45666666777777777777   333332  24444555555555555543333333


Q ss_pred             cCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCC----ccccCC
Q 003199           89 GNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIP----ESILRL  164 (840)
Q Consensus        89 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l  164 (840)
                      ..+++|++|+|++|+|+.. ++                       ...+..+++|++|++++|.++. .|    ..+..+
T Consensus        84 ~~l~~L~~L~L~~N~i~~~-~~-----------------------l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~l  138 (162)
T d1a9na_          84 QALPDLTELILTNNSLVEL-GD-----------------------LDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKV  138 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCG-GG-----------------------GGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHC
T ss_pred             ccccccccceecccccccc-cc-----------------------ccccccccccchhhcCCCcccc-ccchHHHHHHHC
Confidence            4444444444444444421 10                       1234555666666666666653 22    235566


Q ss_pred             CCCcEEE
Q 003199          165 PKLRVLQ  171 (840)
Q Consensus       165 ~~L~~L~  171 (840)
                      ++|++||
T Consensus       139 p~L~~LD  145 (162)
T d1a9na_         139 PQVRVLD  145 (162)
T ss_dssp             TTCSEET
T ss_pred             CCcCeeC
Confidence            7777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-15  Score=157.15  Aligned_cols=202  Identities=19%  Similarity=0.238  Sum_probs=134.3

Q ss_pred             CEEecCCCcCcccCCccccCC--CCCCEEeCCCCCCCccCCCCcccccccccccEEEecCcccccc-CCccccCCCCCcE
Q 003199           20 RRLDLSNNLFTGQFPLSVFNL--TNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQ-IPASIGNVTSLTD   96 (840)
Q Consensus        20 ~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~   96 (840)
                      +.|||+++.+.   |+.+..+  ..+..+.++++   .+.. +........+|++|+|++|.+... +...+.++++|++
T Consensus         3 ~~lDLs~~~l~---~~~l~~l~~~~~~~lrl~~~---~~~~-~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~   75 (284)
T d2astb2           3 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS---FMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN   75 (284)
T ss_dssp             SEEECTTCBCC---HHHHHHHHHTTCSEEECTTC---EECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             CEEECCCCCCC---chHHHHHHhccceEeecccc---cccc-chhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccc
Confidence            57899988765   3333332  23556666665   3322 222234556899999999888643 3455778899999


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCccccc-cCCcccCCCCCCCeeeccCCc-cccc-CCccccC-CCCCcEEEe
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAG-TIPEELGNLTELTDLDMSVNH-LSGK-IPESILR-LPKLRVLQL  172 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~p~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~-l~~L~~L~L  172 (840)
                      |+|++|.+++..+..+..+++|++|+|+++..+.+ .+.....++++|++|++++|. ++.. ....+.. .++|+.|++
T Consensus        76 L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l  155 (284)
T d2astb2          76 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  155 (284)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             ccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhh
Confidence            99999998877778888889999999988653432 122234567889999998863 4321 1122322 468899998


Q ss_pred             ecc--ccccc-cchhhhcCCCCCEEEccCC-cCcccCCcCCCCCCCcceeccccc-ccccc
Q 003199          173 YNN--SLSGE-ISSVIANSTTLTMLSLYDN-SLTGEVPQDLGQWSPLVVLDLSEN-KLSGP  228 (840)
Q Consensus       173 ~~N--~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~  228 (840)
                      +++  .+++. ....+.++++|++|+|++| .+++.....+.++++|++|+|++| .+++.
T Consensus       156 ~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             cccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence            865  34432 2334467888999999885 466666667778888888888884 56543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6e-16  Score=158.89  Aligned_cols=40  Identities=15%  Similarity=0.009  Sum_probs=17.3

Q ss_pred             ccCCCCCCceeecccc-eeeeccchhhcccCcccEEEcCCC
Q 003199          304 TVGNARNLSELFMQRN-QISGFIPSEIYRAISLVKIDLSDN  343 (840)
Q Consensus       304 ~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N  343 (840)
                      .+..+++|++|+|++| .+++.....+.++++|+.|+++++
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3334444444444442 333333334444455555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.3e-15  Score=136.24  Aligned_cols=127  Identities=24%  Similarity=0.200  Sum_probs=82.1

Q ss_pred             ccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCC
Q 003199           88 IGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKL  167 (840)
Q Consensus        88 ~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (840)
                      |.+..+|++|+|++|+|+ .++..+..+++|+.|+|++|+  ...++ .|..+++|++|++++|+++.+.+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~--i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE--IRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSC--CCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCC--CCccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            455666777777777777 445556667777777777776  22332 46667777777777777775555555667777


Q ss_pred             cEEEeeccccccccc-hhhhcCCCCCEEEccCCcCcccCCc----CCCCCCCcceec
Q 003199          168 RVLQLYNNSLSGEIS-SVIANSTTLTMLSLYDNSLTGEVPQ----DLGQWSPLVVLD  219 (840)
Q Consensus       168 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~----~l~~l~~L~~L~  219 (840)
                      ++|++++|+|+.... ..+..+++|++|++++|+++. .+.    .+..+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            777777777764422 456677777777777777763 222    345566677666

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=9.4e-16  Score=162.67  Aligned_cols=93  Identities=22%  Similarity=0.186  Sum_probs=43.3

Q ss_pred             ccccCCCCCcEEEccCCcccccC----chhhhcCCCCCeeecccCccc--cc-------cCCcccCCCCCCCeeeccCCc
Q 003199           86 ASIGNVTSLTDLELTGNFITGHI----PPEIGLLKNLRQLELYYNQQL--AG-------TIPEELGNLTELTDLDMSVNH  152 (840)
Q Consensus        86 ~~~~~l~~L~~L~L~~n~i~~~~----p~~~~~l~~L~~L~L~~n~~~--~~-------~~p~~l~~l~~L~~L~L~~n~  152 (840)
                      .++.....|++|+|++|.|....    ...+...++|+.|+++.+...  ..       .+...+...++|++|+|++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            34444555666666666654321    223344555666665544310  00       011223345556666666665


Q ss_pred             cccc----CCccccCCCCCcEEEeeccccc
Q 003199          153 LSGK----IPESILRLPKLRVLQLYNNSLS  178 (840)
Q Consensus       153 l~~~----~~~~~~~l~~L~~L~L~~N~l~  178 (840)
                      ++..    +...+...++|+.|++++|.+.
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             cccccccchhhhhcccccchheeccccccc
Confidence            5432    1122334455555555555553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=4.1e-14  Score=124.53  Aligned_cols=101  Identities=26%  Similarity=0.384  Sum_probs=48.3

Q ss_pred             EEEecCccccccCCccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCC
Q 003199           72 IMVLATCALHGQIPASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVN  151 (840)
Q Consensus        72 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n  151 (840)
                      +|+|++|.++. ++ .++.+++|++|++++|+|+ .+|+.|+.+++|+.|++++|+  ...+| .+..+++|++|++++|
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~--i~~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA--LENVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC--CCCCG-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccc--ccccC-ccccccccCeEECCCC
Confidence            34444444442 22 2445555555555555555 344445555555555555554  12222 2445555555555555


Q ss_pred             cccccC-CccccCCCCCcEEEeeccccc
Q 003199          152 HLSGKI-PESILRLPKLRVLQLYNNSLS  178 (840)
Q Consensus       152 ~l~~~~-~~~~~~l~~L~~L~L~~N~l~  178 (840)
                      +|++.. ...+..+++|+.|++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            555322 133445555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=7.6e-16  Score=163.40  Aligned_cols=249  Identities=17%  Similarity=0.199  Sum_probs=120.3

Q ss_pred             CchhhhcCCCCCeeecccCccccc---cCCcccCCCCCCCeeeccCCccccc----------CCccccCCCCCcEEEeec
Q 003199          108 IPPEIGLLKNLRQLELYYNQQLAG---TIPEELGNLTELTDLDMSVNHLSGK----------IPESILRLPKLRVLQLYN  174 (840)
Q Consensus       108 ~p~~~~~l~~L~~L~L~~n~~~~~---~~p~~l~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~  174 (840)
                      +...+....+|+.|+|++|.+-..   .+-..+...++|+.|+++++.....          +...+..+++|+.|+|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            445566777788888887752111   1223456667777777776654321          112234456666666666


Q ss_pred             cccccc----cchhhhcCCCCCEEEccCCcCcccCCcCC-------------CCCCCcceeccccccccccCCccccCCC
Q 003199          175 NSLSGE----ISSVIANSTTLTMLSLYDNSLTGEVPQDL-------------GQWSPLVVLDLSENKLSGPLPAKVCSRG  237 (840)
Q Consensus       175 N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~  237 (840)
                      |.++..    ....+...++|++|++++|.+.......+             ...+.|+.+++++|+++.....      
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~------  176 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK------  176 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH------
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccc------
Confidence            666543    22334455666666666666542110000             1122333444444333211000      


Q ss_pred             CchhhhcccccccccCCcccccccCCceEEeeCceeeccCCccccCCCcccEEeccCCcccccCCcccCCCCCCceeecc
Q 003199          238 KLQYFLVLQNMFSGVLPDSLARCKNLLRFRVSNNHLEGSIPEGILSLPHVSIIDLSYNSFSGPIANTVGNARNLSELFMQ  317 (840)
Q Consensus       238 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  317 (840)
                                    .+...+..+++|++|+|++|+++....                   .......+...++|+.|+|+
T Consensus       177 --------------~l~~~l~~~~~L~~L~L~~n~i~~~g~-------------------~~~l~~~l~~~~~L~~L~Ls  223 (344)
T d2ca6a1         177 --------------EWAKTFQSHRLLHTVKMVQNGIRPEGI-------------------EHLLLEGLAYCQELKVLDLQ  223 (344)
T ss_dssp             --------------HHHHHHHHCTTCCEEECCSSCCCHHHH-------------------HHHHHTTGGGCTTCCEEECC
T ss_pred             --------------cccchhhhhhhhccccccccccccccc-------------------ccchhhhhcchhhhcccccc
Confidence                          111122333444444444444431100                   00112233444555555555


Q ss_pred             cceeeec----cchhhcccCcccEEEcCCCccCCCCCCc----cc--CccccchhcccCCccCCC----cchhcc-cccC
Q 003199          318 RNQISGF----IPSEIYRAISLVKIDLSDNLLSGPIPSG----IG--NLKKLNLLMLQSNKLNSS----IPNSLS-SLKS  382 (840)
Q Consensus       318 ~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~--~l~~L~~L~Ls~N~l~~~----~~~~~~-~l~~  382 (840)
                      +|.++..    +...+..+++|++|+|++|.|++.....    +.  ....|+.|+|++|+|+..    +...+. .+++
T Consensus       224 ~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~  303 (344)
T d2ca6a1         224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  303 (344)
T ss_dssp             SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             cccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCC
Confidence            5555422    2233445555666666666655321111    11  124577777777777532    223332 4677


Q ss_pred             CCEEECcCccccc
Q 003199          383 LNVLDLSNNLLTG  395 (840)
Q Consensus       383 L~~L~l~~N~l~~  395 (840)
                      |+.|+|++|++..
T Consensus       304 L~~L~l~~N~~~~  316 (344)
T d2ca6a1         304 LLFLELNGNRFSE  316 (344)
T ss_dssp             CCEEECTTSBSCT
T ss_pred             CCEEECCCCcCCC
Confidence            8888888888863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.7e-13  Score=120.48  Aligned_cols=100  Identities=23%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             CEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcEEEc
Q 003199           20 RRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTDLEL   99 (840)
Q Consensus        20 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   99 (840)
                      |+|+|++|+|+ .++ .+.++++|++|++++|   ++..+|+ .|..+++|++|++++|.|++. | .++.+++|++|++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N---~l~~lp~-~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHN---RLRALPP-ALAALRCLEVLQASDNALENV-D-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSS---CCCCCCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCC---ccCcchh-hhhhhhccccccccccccccc-C-ccccccccCeEEC
Confidence            56788888887 444 3677777777777777   5555553 356666666666666666532 2 3566666666666


Q ss_pred             cCCcccccC-chhhhcCCCCCeeecccCc
Q 003199          100 TGNFITGHI-PPEIGLLKNLRQLELYYNQ  127 (840)
Q Consensus       100 ~~n~i~~~~-p~~~~~l~~L~~L~L~~n~  127 (840)
                      ++|+|++.. ...+..+++|+.|++++|+
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCc
Confidence            666665322 1344455555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.4e-13  Score=121.63  Aligned_cols=113  Identities=19%  Similarity=0.110  Sum_probs=90.5

Q ss_pred             CCCCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccC
Q 003199           11 PDFSPMQNLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGN   90 (840)
Q Consensus        11 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   90 (840)
                      |+.+.+...+.++++++++. ..|..+..+++|++|++++|+  .+..++...|.++++|+.|+|++|+|+.+.+.+|..
T Consensus         2 P~~C~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~   78 (156)
T d2ifga3           2 PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQ--HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF   78 (156)
T ss_dssp             CSSSCCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCS--SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred             cCCCCcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCc--cccccCchhhccccccCcceeeccccCCcccccccc
Confidence            45556667788999999988 778889899999999998763  477888888888888888888888888888888888


Q ss_pred             CCCCcEEEccCCcccccCchhhhcCCCCCeeecccCc
Q 003199           91 VTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQ  127 (840)
Q Consensus        91 l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~  127 (840)
                      +++|++|+|++|+|+...+..|.. .+|+.|+|++|.
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np  114 (156)
T d2ifga3          79 TPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNP  114 (156)
T ss_dssp             CSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSC
T ss_pred             cccccceeccCCCCcccChhhhcc-ccccccccCCCc
Confidence            888888888888888444444444 468888888886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=1.1e-14  Score=140.14  Aligned_cols=112  Identities=28%  Similarity=0.278  Sum_probs=61.5

Q ss_pred             ccccCCCCCcEEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCC
Q 003199           86 ASIGNVTSLTDLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLP  165 (840)
Q Consensus        86 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  165 (840)
                      .++..+++|++|+|++|+|+. ++ .|..+++|+.|+|++|+  ...+|..+..+++|++|++++|+++.+  ..+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~--i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL--IKKIENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEE--ECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccc--ccccccccccccccccccccccccccc--ccccccc
Confidence            445555555555555555552 22 35555556666665554  223443333344566666666666532  2355566


Q ss_pred             CCcEEEeeccccccccc-hhhhcCCCCCEEEccCCcCcc
Q 003199          166 KLRVLQLYNNSLSGEIS-SVIANSTTLTMLSLYDNSLTG  203 (840)
Q Consensus       166 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  203 (840)
                      +|+.|+|++|+|+.... ..+..+++|++|+|++|++..
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            66666666666654322 345666666666666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=2.2e-14  Score=137.91  Aligned_cols=100  Identities=22%  Similarity=0.290  Sum_probs=50.7

Q ss_pred             CCEEecCCC--cCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccCCccccCCCCCcE
Q 003199           19 LRRLDLSNN--LFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQIPASIGNVTSLTD   96 (840)
Q Consensus        19 L~~L~Ls~n--~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   96 (840)
                      ++.++++++  .++ .+|.++..|++|++|+|++|   +|.+++  .+..+++|++|+|++|.|+ .+|..+..+++|+.
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n---~I~~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~   97 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTN---NIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE   97 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEE---EESCCC--CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCE
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECccc---CCCCcc--cccCCccccChhhcccccc-cccccccccccccc
Confidence            445555543  233 44555666666666666666   444443  2555555555555555554 23333333344555


Q ss_pred             EEccCCcccccCchhhhcCCCCCeeecccCc
Q 003199           97 LELTGNFITGHIPPEIGLLKNLRQLELYYNQ  127 (840)
Q Consensus        97 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~  127 (840)
                      |++++|+|+. + ..+..+++|+.|+|++|+
T Consensus        98 L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_          98 LWISYNQIAS-L-SGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             EECSEEECCC-H-HHHHHHHHSSEEEESEEE
T ss_pred             cccccccccc-c-ccccccccccccccccch
Confidence            5555555552 1 234445555555555444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.5e-12  Score=118.00  Aligned_cols=104  Identities=24%  Similarity=0.200  Sum_probs=43.6

Q ss_pred             EEEccCCcccccCchhhhcCCCCCeeecccCccccccCCcccCCCCCCCeeeccCCcccccCCccccCCCCCcEEEeecc
Q 003199           96 DLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIPEELGNLTELTDLDMSVNHLSGKIPESILRLPKLRVLQLYNN  175 (840)
Q Consensus        96 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  175 (840)
                      .++++++.+. ..|..+..+++|++|++++|+.+...-+..|.++++|+.|+|++|+|+.+.+.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3444444444 333344444444444443332222222233444444444444444444444444444444444444444


Q ss_pred             ccccccchhhhcCCCCCEEEccCCcC
Q 003199          176 SLSGEISSVIANSTTLTMLSLYDNSL  201 (840)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~L~~N~l  201 (840)
                      +|+.+.++.|..+ +|++|+|++|++
T Consensus        91 ~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             CCcccChhhhccc-cccccccCCCcc
Confidence            4443333333322 344444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.2e-09  Score=96.75  Aligned_cols=64  Identities=31%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             CCCCCCeeeccCCcccccC--CccccCCCCCcEEEeeccccccccchhhhcCCCCCEEEccCCcCc
Q 003199          139 NLTELTDLDMSVNHLSGKI--PESILRLPKLRVLQLYNNSLSGEISSVIANSTTLTMLSLYDNSLT  202 (840)
Q Consensus       139 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  202 (840)
                      .+++|++|+|++|+|+.+.  +..+..+++|+.|+|++|.|+....-.+.....|++|++++|++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            4455555555555555321  122344555555555555555433323333344555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.3e-08  Score=93.44  Aligned_cols=121  Identities=18%  Similarity=0.066  Sum_probs=67.5

Q ss_pred             CCCEEecCCCcCcccCCccccCCCCCCEEeCCCCCCCccCCCCcccccccccccEEEecCccccccC--CccccCCCCCc
Q 003199           18 NLRRLDLSNNLFTGQFPLSVFNLTNLEVLSFNENPGFKLWKLPESSIFRLTKLRIMVLATCALHGQI--PASIGNVTSLT   95 (840)
Q Consensus        18 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~N~~~~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~   95 (840)
                      +.+.|+++++...   + .+..+..+..|+...|   .... ....+..+++|++|+|++|.|+...  +..+..+++|+
T Consensus        23 ~~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~---~~~~-l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~   94 (162)
T d1koha1          23 SQQALDLKGLRSD---P-DLVAQNIDVVLNRRSS---MAAT-LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK   94 (162)
T ss_dssp             SSCCBCCCCCSSC---T-TTTTTTCCCCTTSHHH---HHHH-HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCC
T ss_pred             hhCeeecccCCCC---c-hhhhccchhhcchhhh---Hhhh-hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccc
Confidence            4556666665432   1 2333444444444443   1111 1233456677777777777776432  34456677777


Q ss_pred             EEEccCCcccccCchhhhcCCCCCeeecccCccccccCC-------cccCCCCCCCeee
Q 003199           96 DLELTGNFITGHIPPEIGLLKNLRQLELYYNQQLAGTIP-------EELGNLTELTDLD  147 (840)
Q Consensus        96 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p-------~~l~~l~~L~~L~  147 (840)
                      .|+|++|.|+...+-.+....+|+.|++++|.+ .....       ..+..+++|+.||
T Consensus        95 ~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl-~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          95 ILNLSGNELKSERELDKIKGLKLEELWLDGNSL-SDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT-SSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccccccCccccchhhhhhhccccceeecCCCCc-CcCcccchhHHHHHHHHCCCCCEEC
Confidence            888888887754443444555677788877762 22222       1245677777775

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.30  E-value=1.2e-06  Score=87.16  Aligned_cols=151  Identities=15%  Similarity=0.069  Sum_probs=101.4

Q ss_pred             cchhHHHHHHhcCccCeeeccCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-CCCcc
Q 003199          517 ISFDQREILEAMTEKNKVGQGGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-HKNIV  595 (840)
Q Consensus       517 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv  595 (840)
                      ++.+.....+.|...+..+.++.+.||+.... ++.++||+........          ...+.+|...+..+. +--+.
T Consensus         5 ~~~~l~~~~~~~~~~~~~~G~s~~~v~rv~~~-~~~~vlk~~~~~~~~~----------~~~~~~E~~~l~~l~~~vpvP   73 (263)
T d1j7la_           5 ISPELKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGT----------TYDVEREKDMMLWLEGKLPVP   73 (263)
T ss_dssp             SCHHHHHHHTTSEEEECSCCCSSSEEEEEECS-SCEEEEEEECGGGTTS----------TTCHHHHHHHHHHHTTTSCCC
T ss_pred             cCHHHHHhhhceEEEEcCCCCCCCcEEEEEeC-CCeEEEEEcCCCcccc----------hhhHHHHHHHHHHHhccCCCC
Confidence            44456677777777666555666789998654 6677888764332111          123566777777663 44467


Q ss_pred             eeeeEEecCccceEEEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhhcC----------------------
Q 003199          596 KLYCYFSSLYCNLLVYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHHGL----------------------  653 (840)
Q Consensus       596 ~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----------------------  653 (840)
                      +++.+....+..++||+++++..+.+.....      .....++.++++.++.||+..                      
T Consensus        74 ~vl~~~~~~~~~~lv~~~l~G~~~~~~~~~~------~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~  147 (263)
T d1j7la_          74 KVLHFERHDGWSNLLMSEADGVLCSEEYEDE------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLN  147 (263)
T ss_dssp             CEEEEEEETTEEEEEEECCSSEEHHHHTTTC------SCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHH
T ss_pred             cEEEEEecCCceEEEEEeccccccccccccc------ccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHH
Confidence            7888888888889999999998876544321      123335556666666666421                      


Q ss_pred             ----------------------------------CCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          654 ----------------------------------LSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       654 ----------------------------------~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                                                        ...++|+|+.|.||++++++.+.|+||+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         148 NDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             TTCSCCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHhhhhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                                              1137899999999999987666799998874

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.89  E-value=1.1e-05  Score=79.60  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=82.7

Q ss_pred             eeeccCC-cEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC--CCCcceeeeEEecCccceE
Q 003199          533 KVGQGGS-GTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR--HKNIVKLYCYFSSLYCNLL  609 (840)
Q Consensus       533 ~lg~G~~-g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~l  609 (840)
                      .+..|.. +.||+....++..+++|......             ...+..|...++.+.  .-.+.+++++..+....++
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~-------------~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~   83 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA-------------LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWL   83 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCT-------------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEE
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccC-------------HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEE
Confidence            3445543 67999988888889999763322             113556777776664  2336677888888888899


Q ss_pred             EEeecCCCChHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhh--------------------------------------
Q 003199          610 VYEYMPNGNLWDALHKGLVHLDWPTRHKIAFGVAQGLAYLHH--------------------------------------  651 (840)
Q Consensus       610 V~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~--------------------------------------  651 (840)
                      ||+|++|.++.+..      .   ....++.++++.+..||+                                      
T Consensus        84 v~~~i~G~~~~~~~------~---~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (255)
T d1nd4a_          84 LLGEVPGQDLLSSH------L---APAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ  154 (255)
T ss_dssp             EEECCSSEETTTSC------C---CHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGT
T ss_pred             EEEeeecccccccc------c---cHHHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhh
Confidence            99999886653210      0   011112223333333332                                      


Q ss_pred             -------------cC----CCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          652 -------------GL----LSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       652 -------------~~----~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                                   ..    ...++|+|+.|.|||++++..+.|+||+.+.
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         155 GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             TCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             hhHHHHHHHHHHHhCCccCCceEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence                         10    1237999999999999987667799998764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=1.3e-05  Score=73.20  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=15.5

Q ss_pred             CCCCCeeeccCCccccc----CCccccCCCCCcEEEeeccc
Q 003199          140 LTELTDLDMSVNHLSGK----IPESILRLPKLRVLQLYNNS  176 (840)
Q Consensus       140 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~  176 (840)
                      .+.|++|+|++|.++..    +...+...++|++|+|++|.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34444444444444421    11223334445555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=6.8e-06  Score=75.05  Aligned_cols=62  Identities=11%  Similarity=0.088  Sum_probs=29.9

Q ss_pred             cCcccEEEcCCCccCCC----CCCcccCccccchhcccCCccCCC-------cchhcccccCCCEEECcCccc
Q 003199          332 AISLVKIDLSDNLLSGP----IPSGIGNLKKLNLLMLQSNKLNSS-------IPNSLSSLKSLNVLDLSNNLL  393 (840)
Q Consensus       332 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~l~~N~l  393 (840)
                      .+.|+.|+|++|.+++.    +-.++...+.|+.|+|++|++...       +...+...++|+.|+++.+..
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            34455555555554421    111233344555555655544321       233444556677777766543

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.30  E-value=0.00061  Score=71.08  Aligned_cols=84  Identities=14%  Similarity=0.121  Sum_probs=47.5

Q ss_pred             cCeeeccCCcEEEEEEeC-CCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccC-C--CCcceeeeEEecCcc
Q 003199          531 KNKVGQGGSGTVYKIDLN-SGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIR-H--KNIVKLYCYFSSLYC  606 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~~~  606 (840)
                      .+.||.|....||++... +++.|+||.-...........   .........|++.++.+. +  ..+.+++.+  +.+.
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~---~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~  105 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESW---PLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEM  105 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCC---CCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTT
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCC---CCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCC
Confidence            346899999999999765 467899997532111100000   001122345777776552 2  345556554  4456


Q ss_pred             ceEEEeecCCCCh
Q 003199          607 NLLVYEYMPNGNL  619 (840)
Q Consensus       607 ~~lV~e~~~~gsL  619 (840)
                      .++||||+++..+
T Consensus       106 ~~lvmE~L~~~~~  118 (392)
T d2pula1         106 AVTVMEDLSHLKI  118 (392)
T ss_dssp             TEEEECCCTTSEE
T ss_pred             CEEEEeccCCccc
Confidence            6899999987543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=7.9e-05  Score=67.69  Aligned_cols=89  Identities=13%  Similarity=0.131  Sum_probs=48.8

Q ss_pred             CCCCCCceeecccceeeec----cchhhcccCcccEEEcCCCccCCC----CCCcccCccccch--hcccCCccCC----
Q 003199          306 GNARNLSELFMQRNQISGF----IPSEIYRAISLVKIDLSDNLLSGP----IPSGIGNLKKLNL--LMLQSNKLNS----  371 (840)
Q Consensus       306 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~--L~Ls~N~l~~----  371 (840)
                      ...++|++|+|++|.++..    +...+...++++.+++++|.+...    +...+...++|+.  |++++|++..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            3445555555555555432    122333445666666666666432    2233445566665  4445666643    


Q ss_pred             CcchhcccccCCCEEECcCcccc
Q 003199          372 SIPNSLSSLKSLNVLDLSNNLLT  394 (840)
Q Consensus       372 ~~~~~~~~l~~L~~L~l~~N~l~  394 (840)
                      .+...+...++|+.|+++.|...
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeCcCCCCc
Confidence            23445567788888888877553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.93  E-value=0.00016  Score=65.51  Aligned_cols=65  Identities=9%  Similarity=-0.004  Sum_probs=35.6

Q ss_pred             CCCCCCCEEecCC-CcCccc----CCccccCCCCCCEEeCCCCCCCccCCCCc----ccccccccccEEEecCcccc
Q 003199           14 SPMQNLRRLDLSN-NLFTGQ----FPLSVFNLTNLEVLSFNENPGFKLWKLPE----SSIFRLTKLRIMVLATCALH   81 (840)
Q Consensus        14 ~~l~~L~~L~Ls~-n~i~~~----~p~~~~~l~~L~~L~L~~N~~~~l~~l~~----~~~~~l~~L~~L~L~~n~l~   81 (840)
                      .+.++|++|+|++ +.|+..    +..++...++|++|+|++|.   +..-..    ..+...+.++.+++.+|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~---l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR---SNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC---CCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc---ccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3557788888876 456522    34445567777777777773   222111    12333445555555555543

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0028  Score=64.00  Aligned_cols=135  Identities=13%  Similarity=0.108  Sum_probs=76.0

Q ss_pred             cCCcEEEEEEeCCCcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCCc--ceee-----eEEecCccceE
Q 003199          537 GGSGTVYKIDLNSGEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKNI--VKLY-----CYFSSLYCNLL  609 (840)
Q Consensus       537 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni--v~l~-----~~~~~~~~~~l  609 (840)
                      +.--.||++...+|+.|++|+......           ..+++..|...+..+....+  +..+     ..+......+.
T Consensus        33 s~EN~vy~v~~~dg~~~VlK~~rp~~~-----------s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~  101 (325)
T d1zyla1          33 SYENRVYQFQDEDRRRFVVKFYRPERW-----------TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFA  101 (325)
T ss_dssp             CSSSEEEEECCTTCCCEEEEEECTTTS-----------CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEE
T ss_pred             cccceeEEEEcCCCCEEEEEEeCCCCC-----------CHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEE
Confidence            334689999999999999998743321           13456778887777753222  1111     12234556688


Q ss_pred             EEeecCCCChH-----H---------Hhhc----C----CCCCCh-------------------HHHHHHHHHHHHHHHH
Q 003199          610 VYEYMPNGNLW-----D---------ALHK----G----LVHLDW-------------------PTRHKIAFGVAQGLAY  648 (840)
Q Consensus       610 V~e~~~~gsL~-----~---------~l~~----~----~~~~~~-------------------~~~~~i~~~i~~~l~~  648 (840)
                      |++|++|..+.     .         .++.    .    ....++                   ..+..+...+...++.
T Consensus       102 l~~~~~G~~~~~~~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  181 (325)
T d1zyla1         102 VFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAA  181 (325)
T ss_dssp             EEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHH
T ss_pred             EEeecCCcCCCCCCHHHHHHHHHHHHHHHhhcccCCccccCCCCHHHHhhhhHHHHHHcCcCCHHHHHHHHHHHHHHHHH
Confidence            99999764321     0         0110    0    001111                   1111222222333333


Q ss_pred             Hh----hcCCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          649 LH----HGLLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       649 LH----~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      +.    +....++||+|+.+.|||++++  ..++||+-+.
T Consensus       182 l~~~~~~~~p~~liHgDlh~~NvL~~~~--~~~IDFdd~~  219 (325)
T d1zyla1         182 VTAHWREDFTVLRLHGDCHAGNILWRDG--PMFVDLDDAR  219 (325)
T ss_dssp             HHHHCCSCSCCEECCSSCSGGGEEESSS--EEECCCTTCC
T ss_pred             HHHhccccCCceeecCCCCcccEEEeCC--ceEEechhcc
Confidence            32    2233578999999999999754  4588998774

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.31  E-value=0.0076  Score=62.57  Aligned_cols=73  Identities=21%  Similarity=0.293  Sum_probs=47.2

Q ss_pred             cCeeeccCCcEEEEEEeCC--------CcEEEEEEecccccccccCchhhHHHHHHHHHHHHHHhccCCCC-cceeeeEE
Q 003199          531 KNKVGQGGSGTVYKIDLNS--------GEVVAVKKLWSQRTKVSASDTDQLQLDKGLKTEVETLGNIRHKN-IVKLYCYF  601 (840)
Q Consensus       531 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~  601 (840)
                      ++.|+.|-.-.+|++...+        ++.|.+++.-...            ..-...+|..+++.+.-.+ ..++++++
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~------------~~idr~~E~~i~~~ls~~gl~Pkll~~~  114 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE------------TESHLVAESVIFTLLSERHLGPKLYGIF  114 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC------------CHHHHHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcc------------hhhHHHHHHHHHHHHHhCCCCCeEEEEc
Confidence            3578889999999997654        3456666652111            0123456888888775334 45777776


Q ss_pred             ecCccceEEEeecCCCCh
Q 003199          602 SSLYCNLLVYEYMPNGNL  619 (840)
Q Consensus       602 ~~~~~~~lV~e~~~~gsL  619 (840)
                      .+    .+|+||+++..+
T Consensus       115 ~~----g~I~efi~g~~l  128 (395)
T d1nw1a_         115 SG----GRLEEYIPSRPL  128 (395)
T ss_dssp             TT----EEEECCCCEEEC
T ss_pred             CC----ceEEEEeccccC
Confidence            53    689999987544

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.34  E-value=0.02  Score=57.13  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=27.6

Q ss_pred             CCCCeEecCCCCCCEEEcCCCCCeeecccchh
Q 003199          653 LLSPIIHRDIKSTNILLDVNYQPKVADFGIAK  684 (840)
Q Consensus       653 ~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~  684 (840)
                      ...++||+|+.+.||+++.+...-|.||+.+.
T Consensus       181 L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         181 LPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             SCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccccCCcchhhhhcccccceeEecccccc
Confidence            34689999999999999988777899999874