Citrus Sinensis ID: 003286

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830----
MRLSTAGFSPQHQEGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSPQEQKEAYLPAELGTLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPPTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPVGLPAFHGIKDEDLGINSQLMWLRGDGDRGMQSLNFQGLGVTPWMQPRMDASMLGLQNDMYQAMAAAALREMRAVDPSKPNAASLMQFQQPQNLPSRTSALVQSQMLQQSHPQQTFLQGVQENQHQSQSQTHSQSHLLQPQLQHSHSFNNQQQQPLPQPQQQVDHQQIPSAVSAMSQFASVSQSQSPPMQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWP
cccccccccccccccccccccHHHHHHcccccccccccccEEEEccccHHHHHHccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEcccccccccccccccccccccccccccEEEEEEEccccccccccEEEccccccccccccccccccccEEEEEEcccccEEEEEEEEcccccEEccccccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHccccEEEEEccccccccccEEHHHHHHHHHccccccccEEEEEEccccccEEEEEEEEEEEEcccccccccccccccEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHccHHccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEccccccc
cccccccccccccccccccccHHHHHHHcccccEccccccEEEEcccccHHHHHHHccHHHHccccccccccccEEEEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccHHEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEEccEEEcccEEEEEEcccccEEEEEEEccccccccccccEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHcccEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHccccccccccccccccccHHHHccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHccccccccccccccEEEEEcccccEEEEcccccc
mrlstagfspqhqegekrvLNSELWhacagplvslpavgsrvvyfpqghseqvaastnkevdahipnypslppqlicqlhnvtmhadietDEVYAQmtlqplspqeqkeaylpaelgtlskqptnyfcktltasdtsthggfsvprraaekvfppldfsqqppaqELIARdlhdnewkfrhifrgqpkrhlltTGWSVFVSAKrlvagdsvLFIWNDKNQLLLgirranrpptvmpssvlssdsMHLGLLAAAAHAAatnsrftifynpraspsefvIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGtitgisdldpvkwpnshwrsvkvgwdestagerqprvslweieplttfpmysspfplrlkrpwpvglpafhgikdedlginSQLMWlrgdgdrgmqslnfqglgvtpwmqprmdasMLGLQNDMYQAMAAAALREMravdpskpnaaslmqfqqpqnlpsrtSALVQSQMlqqshpqqtflqgvqenqhqsqsqthsqshllqpqlqhshsfnnqqqqplpqpqqqvdhqqiPSAVSAMSQFasvsqsqsppmqaisslcqqqsfsdsngnpatnpivsplhsllgsyaqdesshllnlprsnplihsptwpskraaveplfssgapqcvlpsveqlgpphanisqnsislppfpgrecsidqegsadpqshllfgvniepsslLMQNEMsslggvgsnsdsttipfassnymstagadfsvnpeiapsscidesgflqspenvgqvnppnrtFVKVYksgsfgrslditkFSSYHELRSELARMFgleghledplrsgwqlVFVDRendvlllgdgpwp
mrlstagfspqhqeGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSPQEQKEAYLPAELGTLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPPTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTItgisdldpvkwpNSHWRSvkvgwdestagerqprvslweiePLTTFPMYSSPFPLRLKRPWPVGLPAFHGIKDEDLGINSQLMWLRGDGDRGMQSLNFQGLGVTPWMQPRMDASMLGLQNDMYQAMAAAALREMRAVDPSKPNAASLMQFQQPQNLPSRTSALVQSQMLQQSHPQQTFLQGVQENQHQSQSQTHSQSHLLQPQLQHSHSFNNQQQQPLPQPQQQVDHQQIPSAVSAMSQFASVSQSQSPPMQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPenvgqvnppnRTFVKVYKsgsfgrsldiTKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWP
MRLSTAGFSPQHQEGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSPQEQKEAYLPAELGTLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPPTVMPSSVLSSDSMHLGLLaaaahaaaTNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPVGLPAFHGIKDEDLGINSQLMWLRGDGDRGMQSLNFQGLGVTPWMQPRMDASMLGLQNDMYQamaaaalremraVDPSKPNAASLMQFQQPQNLPSRTSALVqsqmlqqshpqqTFLQGVQENqhqsqsqthsqshllqpqlqhshsfnnqqqqplpqpqqqvdhqqipSAVSAMSQFASVSQSQSPPMQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWP
******************VLNSELWHACAGPLVSLPAVGSRVVYFPQGH************DAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMT************************PTNYFCKTLTA*********************************LIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRA****************MHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPVGLPAFHGIKDEDLGINSQLMWLRGDGDRGMQSLNFQGLGVTPWMQPRMDASMLGLQNDMYQ*******************************************************************************************************************************************************************************************************************************************************LFGV**************************************************************************RTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLG*****
*********************SELWHACAGPLVSLPAVGSRVVYFPQGHSEQVA************NYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPL************************FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRA*************************AHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTT***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPW*
******************VLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSPQEQKEAYLPAELGTLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPPTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPVGLPAFHGIKDEDLGINSQLMWLRGDGDRGMQSLNFQGLGVTPWMQPRMDASMLGLQNDMYQAMAAAALREMRAVDPSKPNAASLMQFQQPQNLPSRTSALVQSQMLQQSHPQQTFLQ*************************************************IPSA***********************************NPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSS********DSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWP
*****************RVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLS*****EAYLPAEL**LSKQPTNYFCKTLTASD****GGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRP***MP*S**SSD*MHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPVGLPAF********************************LGVTPWMQ****AS****Q*DMYQAMAAAALRE***************************************************************************************************************************************************************************************************************************************************IEPSSLL****************************************************************PNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWP
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLSTAGFSPQHQEGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSPQEQKEAYLPAELGTLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPPTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPVGLPAFHGIKDEDLGINSQLMWLRGDGDRGMQSLNFQGLGVTPWMQPRMDASMLGLQNDMYQAMAAAALREMRAVDPSKPNAASLMQFQQPQNLPSRTSALVQSQMLQQSHPQQTFLQGVQENQHQSQSQTHSQSHLLQPQLQHSHSFNNQQQQPLPQPQQQVDHQQIPSAVSAMSQFASVSQSQSPPMQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query834 2.2.26 [Sep-21-2011]
Q6H6V4908 Auxin response factor 6 O yes no 0.972 0.893 0.665 0.0
A2X1A1908 Auxin response factor 6 O N/A no 0.972 0.893 0.665 0.0
Q653U3917 Auxin response factor 17 no no 0.979 0.890 0.649 0.0
A2YG67917 Auxin response factor 17 N/A no 0.979 0.890 0.649 0.0
Q2QM84899 Auxin response factor 25 no no 0.954 0.885 0.651 0.0
Q9ZTX8 935 Auxin response factor 6 O yes no 0.573 0.511 0.856 0.0
Q9FGV1811 Auxin response factor 8 O no no 0.635 0.653 0.686 0.0
Q0J951818 Auxin response factor 12 no no 0.498 0.508 0.818 0.0
Q258Y5816 Auxin response factor 12 N/A no 0.498 0.509 0.818 0.0
P93024902 Auxin response factor 5 O no no 0.940 0.869 0.415 1e-160
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function desciption
 Score = 1067 bits (2759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/843 (66%), Positives = 657/843 (77%), Gaps = 32/843 (3%)

Query: 9   SPQHQEGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNY 68
           SP     E++ LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKE+++ IPNY
Sbjct: 16  SPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNY 75

Query: 69  PSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSPQEQKEAYLPAELGTLSKQPTNYFC 128
           P+LPPQLICQLHNVTMHAD ETDEVYAQMTLQPLSPQE K+ +LPAELGT SKQPTNYFC
Sbjct: 76  PNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFC 135

Query: 129 KTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPK 188
           KTLTASDTSTHGGFSVPRRAAEKVFPPLDF+QQPPAQEL+A+DLH NEWKFRHIFRGQPK
Sbjct: 136 KTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPK 195

Query: 189 RHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPPTVMPSSVLSSDSMHLG 248
           RHLLTTGWSVFVSAKRLVAGDSVLFIWND NQLLLGIRRANRP TVMPSSVLSSDSMH+G
Sbjct: 196 RHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIG 255

Query: 249 LLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESS 308
           LLAAAAHAA+TNSRFTIFYNPRASPSEFVIPLAKY+KAVYHTR+SVGMRFRMLFETEESS
Sbjct: 256 LLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRISVGMRFRMLFETEESS 315

Query: 309 VRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSP 368
           VRRYMGTITGISDLDPV+W NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMY SP
Sbjct: 316 VRRYMGTITGISDLDPVRWMNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSP 375

Query: 369 FPLRLKRPWPVGLPAFHGIKDEDLGINSQLMWLRGDGDRGMQSLNFQGLGVTPWMQPRMD 428
           FPLRLKRPWP GLP+ +G K++DL   S LMWLR   + G QSLNF GLG++PWMQPR+D
Sbjct: 376 FPLRLKRPWPTGLPSLYGGKEDDLA--SSLMWLRDSQNTGFQSLNFGGLGMSPWMQPRLD 433

Query: 429 ASMLGLQNDMYQAMAAAALREMRAVDPSKPNAASLMQFQQPQNLPSRTSALVQSQMLQQS 488
           +S+LGLQ DMYQ +AAAA  +    + +K  + +++QFQQPQN+  R S+L+ SQ+LQQ+
Sbjct: 434 SSLLGLQPDMYQTIAAAAALQ----NTTKQVSPAMLQFQQPQNIVGR-SSLLSSQILQQA 488

Query: 489 HPQQTFLQGVQENQHQSQSQTHSQSHLLQPQLQHSHSFNNQQQQPLPQPQQQV------- 541
            PQ   +    +N + +  Q HSQ   LQ  LQH  SFN Q+ Q  PQ QQQ        
Sbjct: 489 QPQFQQM--YHQNINGNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQPQ 546

Query: 542 -----------DHQQIPSAVSAMSQFASVSQSQSPPMQAISSLCQQQSFSDSNGNPATNP 590
                      + Q +P+A+S  SQ +S  QS    +Q +S   QQ +F D+N +  +  
Sbjct: 547 HQQMQQQKHLSNFQTVPNALSVFSQLSSTPQSTPSTLQTVSPFSQQHNFPDTNISCLSPS 606

Query: 591 IVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQ 650
            VS +H  L S+  + +S L  +PR  P+  S  W SKR AVE   +S  P  +   +E 
Sbjct: 607 NVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKRVAVESTITS-RPHDISSQIEN 665

Query: 651 LGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGV 710
                ++I QNS +L P PGREC +DQ+GS+DPQ+H LFGVNI+  SLLMQ+ + SL   
Sbjct: 666 FDLTPSSIPQNS-TLAPLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPSLHNE 724

Query: 711 GSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPNRTFVK 770
            S   S+TIP+++SN++S +  D+ ++  +    C+DESG++   +N  QV  P+ TFVK
Sbjct: 725 NS---SSTIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFVK 781

Query: 771 VYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGD 830
           VYKSG+ GR LDIT+FSSYHELRSE+ R+FGLEG LEDPLRSGWQLVFVDRE+DVLL+GD
Sbjct: 782 VYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGD 841

Query: 831 GPW 833
            PW
Sbjct: 842 DPW 844
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Oryza sativa subsp. japonica (taxid: 39947)
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description
>sp|Q653U3|ARFQ_ORYSJ Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|A2YG67|ARFQ_ORYSI Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|Q2QM84|ARFY_ORYSJ Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description
>sp|Q9FGV1|ARFH_ARATH Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2 Back     alignment and function description
>sp|Q0J951|ARFL_ORYSJ Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1 Back     alignment and function description
>sp|Q258Y5|ARFL_ORYSI Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1 Back     alignment and function description
>sp|P93024|ARFE_ARATH Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query834
225443952908 PREDICTED: auxin response factor 6-like 1.0 0.918 0.836 0.0
224114483914 predicted protein [Populus trichocarpa] 0.996 0.909 0.809 0.0
302398563895 ARF domain class transcription factor [M 0.991 0.924 0.823 0.0
449466121899 PREDICTED: auxin response factor 6-like 0.995 0.923 0.804 0.0
449515293884 PREDICTED: LOW QUALITY PROTEIN: auxin re 0.977 0.921 0.804 0.0
356555494897 PREDICTED: auxin response factor 6-like 0.990 0.920 0.802 0.0
449433545902 PREDICTED: auxin response factor 6-like 0.988 0.913 0.797 0.0
224056403884 predicted protein [Populus trichocarpa] 0.979 0.924 0.794 0.0
449518891916 PREDICTED: auxin response factor 6-like 0.995 0.906 0.793 0.0
47496696916 auxin response factor 3 [Cucumis sativus 0.995 0.906 0.789 0.0
>gi|225443952|ref|XP_002279808.1| PREDICTED: auxin response factor 6-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1370 bits (3545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/843 (83%), Positives = 745/843 (88%), Gaps = 9/843 (1%)

Query: 1   MRLSTAGFSPQHQEGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKE 60
           MRLS AGF+ Q QEGEKR LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKE
Sbjct: 1   MRLSPAGFTHQTQEGEKRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKE 60

Query: 61  VDAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSPQEQKEAYLPAELGTLS 120
           VDAHIPNYPSLPPQLICQLHNVTMHAD+ETDEVYAQMTLQPLSPQEQK+AYLPAELG  S
Sbjct: 61  VDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAYLPAELGVPS 120

Query: 121 KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFR 180
           KQP+NYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFR
Sbjct: 121 KQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFR 180

Query: 181 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPPTVMPSSVL 240
           HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN+KNQLLLGIRRANRP TVMPSSVL
Sbjct: 181 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVL 240

Query: 241 SSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRM 300
           SSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKY KAVYHTRVSVGMRFRM
Sbjct: 241 SSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYHTRVSVGMRFRM 300

Query: 301 LFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360
           LFETEESSVRRYMGTITGISDLDPV+WPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT
Sbjct: 301 LFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360

Query: 361 TFPMYSSPFPLRLKRPWPVGLPAFHGIKDEDLGINSQLMWLRGDG-DRGMQSLNFQGLGV 419
           TFPMY SPFPLRLKRPWP GLP+ HGIKD+DLG+NS LMWLRGD  DRG+QSLNFQG+GV
Sbjct: 361 TFPMYPSPFPLRLKRPWPPGLPSLHGIKDDDLGMNSPLMWLRGDNVDRGIQSLNFQGIGV 420

Query: 420 TPWMQPRMDASMLGLQNDMYQAMAAAALREMRAVDPSKPNAASLMQFQQPQNLPSRTSAL 479
            PWMQPR+DASMLGLQ DMYQAMAAAAL+EMRAVDPSK   A L+ +QQPQN+ SR+S +
Sbjct: 421 NPWMQPRLDASMLGLQTDMYQAMAAAALQEMRAVDPSKQAPAPLLHYQQPQNVASRSSCI 480

Query: 480 VQSQMLQQSHPQQTFLQGVQENQHQSQSQT--------HSQSHLLQPQLQHSHSFNNQQQ 531
           +Q QMLQQS PQQ FLQG+ EN +Q+QSQT            H       +++       
Sbjct: 481 MQPQMLQQSQPQQAFLQGIHENTNQAQSQTQSHLLQQHLQHQHSFNNNNNNNNQQQQPAP 540

Query: 532 QPLPQPQQQVDHQQIPSAVSAMSQFASVSQSQSPPMQAISSLCQQQSFSDSNGNPATNPI 591
            P    QQ VDHQ+IPS VSA+SQFAS SQSQSP +Q ISSLCQQQSFSDS GNP T+PI
Sbjct: 541 PPQQPQQQLVDHQRIPSVVSAISQFASASQSQSPSLQTISSLCQQQSFSDSTGNPGTSPI 600

Query: 592 VSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQL 651
           +SPL SLLGS+ QDESS+LLN+PRS  L+ S  W  KR AVEPL  SGA QC+LP VEQL
Sbjct: 601 ISPLQSLLGSFPQDESSNLLNMPRSTSLMPSAAWLPKRVAVEPLLPSGASQCILPQVEQL 660

Query: 652 GPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVG 711
           G P  NISQNSISLPPFPGRECSIDQEGS DPQSHLLFGVNIEPSSLLMQN MS L GVG
Sbjct: 661 GQPQTNISQNSISLPPFPGRECSIDQEGSTDPQSHLLFGVNIEPSSLLMQNGMSGLRGVG 720

Query: 712 SNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPNRTFVKV 771
           S SDST IPF+SSN+MS+ G DFS+NP + PSSCIDESGFLQSPENVGQVNPP RTFVKV
Sbjct: 721 SESDSTAIPFSSSNFMSSTGTDFSLNPAMTPSSCIDESGFLQSPENVGQVNPPTRTFVKV 780

Query: 772 YKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDG 831
           YKSGSFGRSLDITKFSSYHELR ELARMFGLEG LEDP RSGWQLVFVDRENDVLLLGD 
Sbjct: 781 YKSGSFGRSLDITKFSSYHELRGELARMFGLEGQLEDPRRSGWQLVFVDRENDVLLLGDD 840

Query: 832 PWP 834
           PWP
Sbjct: 841 PWP 843

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224114483|ref|XP_002316773.1| predicted protein [Populus trichocarpa] gi|222859838|gb|EEE97385.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302398563|gb|ADL36576.1| ARF domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449466121|ref|XP_004150775.1| PREDICTED: auxin response factor 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515293|ref|XP_004164684.1| PREDICTED: LOW QUALITY PROTEIN: auxin response factor 6-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356555494|ref|XP_003546066.1| PREDICTED: auxin response factor 6-like [Glycine max] Back     alignment and taxonomy information
>gi|449433545|ref|XP_004134558.1| PREDICTED: auxin response factor 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224056403|ref|XP_002298839.1| predicted protein [Populus trichocarpa] gi|222846097|gb|EEE83644.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449518891|ref|XP_004166469.1| PREDICTED: auxin response factor 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|47496696|dbj|BAD19063.1| auxin response factor 3 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query834
TAIR|locus:2204237 935 ARF6 "auxin response factor 6" 0.568 0.506 0.822 2.89999999999e-313
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.564 0.580 0.731 1.3e-222
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.557 0.428 0.593 1.3e-178
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.423 0.391 0.631 1.4e-148
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.443 0.430 0.521 7.6e-118
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.447 0.473 0.512 4.8e-114
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.428 0.536 0.524 1.6e-111
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.430 0.577 0.490 5e-106
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.410 0.568 0.518 1.2e-102
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.443 0.579 0.469 5.2e-102
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2103 (745.4 bits), Expect = 2.9e-313, Sum P(2) = 2.9e-313
 Identities = 399/485 (82%), Positives = 428/485 (88%)

Query:     1 MRLSTAGFSPQHQE--GEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTN 58
             MRLS+AGF+PQ  E  GEKRVLNSELWHACAGPLVSLP VGSRVVYFPQGHSEQVAASTN
Sbjct:     1 MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTN 60

Query:    59 KEVDAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSPQEQKEAYLPAELGT 118
             KEVDAHIPNYPSL PQLICQLHNVTMHAD+ETDEVYAQMTLQPL+ QEQK+ YLPAELG 
Sbjct:    61 KEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGV 120

Query:   119 LSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWK 178
              S+QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLD+SQQPPAQEL+ARDLHDNEWK
Sbjct:   121 PSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWK 180

Query:   179 FRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPPTVMPSS 238
             FRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRP TVMPSS
Sbjct:   181 FRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSS 240

Query:   239 VLSSDSMHLGLLXXXXXXXXTNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRF 298
             VLSSDSMHLGLL        TNSRFTIFYNPRASPSEFVIPLAKY+KAVYHTRVSVGMRF
Sbjct:   241 VLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRF 300

Query:   299 RMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEP 358
             RMLFETEESSVRRYMGTITGI DLDP +W NSHWRSVKVGWDESTAGERQPRVSLWEIEP
Sbjct:   301 RMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEP 360

Query:   359 LTTFPMYSSPFPLRLKRPWPVGLPAFHGIKDEDLGIN--SQLMWLRGDGDRGMQSLNFQG 416
             LTTFPMY SPFPLRLKRPWP GLP+FHG+K++D+G++  S LMW     DRG+QSLNFQG
Sbjct:   361 LTTFPMYPSPFPLRLKRPWPPGLPSFHGLKEDDMGMSMSSPLMW-----DRGLQSLNFQG 415

Query:   417 LGVTPWMQPRMDAS-MLGLQNDMYQXXXXXXXXXXXXVDPSKPNAASLMQFQQPQNLPSR 475
             +GV PWMQPR+D S +LG+QND+YQ            +DP+K  AASL+QFQ       +
Sbjct:   416 MGVNPWMQPRLDTSGLLGMQNDVYQAMAAAALQDMRGIDPAKA-AASLLQFQNSPGFSMQ 474

Query:   476 TSALV 480
             + +LV
Sbjct:   475 SPSLV 479
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009908 "flower development" evidence=IGI
GO:0005515 "protein binding" evidence=IPI
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009886 "post-embryonic morphogenesis" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
GO:0048507 "meristem development" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZTX8ARFF_ARATHNo assigned EC number0.85680.57310.5112yesno
A2YG67ARFQ_ORYSINo assigned EC number0.64900.97960.8909N/Ano
Q6H6V4ARFF_ORYSJNo assigned EC number0.66540.97240.8931yesno
A2X1A1ARFF_ORYSINo assigned EC number0.66540.97240.8931N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XI2869
hypothetical protein (915 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query834
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 3e-45
pfam0236297 pfam02362, B3, B3 DNA binding domain 1e-26
smart0101996 smart01019, B3, B3 DNA binding domain 2e-26
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 7e-22
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 2e-13
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 5e-06
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 8e-06
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-05
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-04
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 2e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.001
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 0.002
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 0.003
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  156 bits (396), Expect = 3e-45
 Identities = 56/84 (66%), Positives = 71/84 (84%), Gaps = 1/84 (1%)

Query: 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRY 312
           AAHAA+T S F +FYNPRAS SEFV+P AKY+KA+ +   SVGMRF+M FETE+SS RR+
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNN-PFSVGMRFKMRFETEDSSERRF 59

Query: 313 MGTITGISDLDPVKWPNSHWRSVK 336
            GTI+G+SDLDP++WPNS WRS++
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 834
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 99.9
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.68
KOG06441113 consensus Uncharacterized conserved protein, conta 99.41
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.39
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.73
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 96.66
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 95.83
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 95.32
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 95.21
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 95.12
cd0599281 PB1 The PB1 domain is a modular domain mediating s 95.07
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 95.04
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 91.98
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 91.85
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 90.18
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 89.65
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 88.82
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=2.1e-35  Score=262.02  Aligned_cols=83  Identities=65%  Similarity=1.088  Sum_probs=81.2

Q ss_pred             HHHHHHcCCcEEEEEcCCCCCCccccchHHHHHHHhcCCCccCCEEEEeeeccccccceeeEEEEEeecCCCCCCCCCCc
Q 003286          253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHW  332 (834)
Q Consensus       253 Aa~aaat~~~F~V~Y~PRas~sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d~Dp~rWP~S~W  332 (834)
                      |+|||+++++|+|+||||++++|||||++||++|+. ++|++||||||+||+||+++++|+|||+||+++||+|||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~-~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALN-HPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhc-CCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCc
Confidence            689999999999999999999999999999999997 8999999999999999999999999999999999999999999


Q ss_pred             eeeE
Q 003286          333 RSVK  336 (834)
Q Consensus       333 R~Lq  336 (834)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9997

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query834
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 1e-06
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 127 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQ 186
           F K +T SD        +P+  AEK FP    +       L   D++   W+FR+ +   
Sbjct: 14  FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 73
Query: 187 PKRHLLTTGWSVFVSAKRLVAGDSVLF 213
            + ++LT GWS FV  K L AGD V F
Sbjct: 74  SQSYVLTKGWSRFVKEKNLRAGDVVSF 100

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query834
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 3e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  152 bits (384), Expect = 3e-43
 Identities = 37/126 (29%), Positives = 57/126 (45%)

Query: 117 GTLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNE 176
           G+  +     F K +T SD        +P+  AEK FP    +       L   D++   
Sbjct: 4   GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKV 63

Query: 177 WKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPPTVMP 236
           W+FR+ +    + ++LT GWS FV  K L AGD V F  ++     L I   +R  + + 
Sbjct: 64  WRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLD 123

Query: 237 SSVLSS 242
           +S  SS
Sbjct: 124 ASGPSS 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query834
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.96
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.65
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.41
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 95.45
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 93.47
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 92.88
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 92.18
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 91.98
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 82.87
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.96  E-value=9.3e-30  Score=239.63  Aligned_cols=114  Identities=29%  Similarity=0.464  Sum_probs=105.1

Q ss_pred             CCCCCceeEEEeecccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEeecCCCeeEEEEEEcCCCcceeecccccc
Q 003286          119 LSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSV  198 (834)
Q Consensus       119 ~~~~~~~lF~K~LT~SDv~~~grfsVPk~~AE~~FP~Ld~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~  198 (834)
                      ..+....+|+|+||+|||++++||+||+++||+|||.++..+.+++++|.++|.+|++|+|||+||+++++|+||+||+.
T Consensus         6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~   85 (130)
T 1wid_A            6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR   85 (130)
T ss_dssp             --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred             CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence            45667889999999999999999999999999999999987777889999999999999999999999999999999999


Q ss_pred             eecccCCcCCCEEEEEEcC--CCcEEEEEEccCCCC
Q 003286          199 FVSAKRLVAGDSVLFIWND--KNQLLLGIRRANRPP  232 (834)
Q Consensus       199 FV~~KkL~aGDsVvF~R~~--~g~L~VGIRRa~r~~  232 (834)
                      ||++|+|++||.|+|+|++  +++|+|++||+.++.
T Consensus        86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            9999999999999999986  468999999998754
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 834
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 6e-36
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 8e-24
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 5e-12
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  129 bits (326), Expect = 6e-36
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 121 KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFR 180
           +     F K +T SD        +P+  AEK FP    +       L   D++   W+FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 181 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIW--NDKNQLLLGIRRAN 229
           + +    + ++LT GWS FV  K L AGD V F        QL +G +  +
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS 111
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query834
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.94
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.83
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.34
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.38
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 90.59
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=6.3e-27  Score=212.81  Aligned_cols=109  Identities=30%  Similarity=0.479  Sum_probs=102.5

Q ss_pred             CceeEEEeecccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEeecCCCeeEEEEEEcCCCcceeecccccceecc
Q 003286          123 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA  202 (834)
Q Consensus       123 ~~~lF~K~LT~SDv~~~grfsVPk~~AE~~FP~Ld~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~  202 (834)
                      ...+|.|+||+|||++++||+||+++|+.|||+++.....+++.|.++|.+|++|.|+|+||++.++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHH
Confidence            35799999999999999999999999999999999988889999999999999999999999888999999999999999


Q ss_pred             cCCcCCCEEEEEEc--CCCcEEEEEEccCCC
Q 003286          203 KRLVAGDSVLFIWN--DKNQLLLGIRRANRP  231 (834)
Q Consensus       203 KkL~aGDsVvF~R~--~~g~L~VGIRRa~r~  231 (834)
                      ++|++||.|+|+|+  ++++++|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             cCCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence            99999999999997  467999999998643
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure