Citrus Sinensis ID: 003294

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830---

MGKKQKQKIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRVADKRLRKTSVLKENEDKGLQLDPVDALPVKTLDGKLYYRTRPKPENGGDENEVGEGEKDGGGNEGIIKLTKAERRAKLKKSKKEAKKEGKKLSKPEEAEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDKSKVKNKKNNKRKSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERESFNSKSDTQKSSSRRKRGNGTSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYKQQKKTGSTKTKKCKKLLIA

cccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc

ccccccccccccccccccccHcccEEcHHHHHHHHHcHHHHHHHHcccHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHccccccccccHHHccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHccccHHccHHHHcHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccEccccccHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHHHHHccHHHcccccccccccccccccccccccEcccHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEc

mgkkqkqkiilppelppeiledeievsdedlqfvsenrdyagfvsrldthsitKHVTRVADKRLRKTSVLKenedkglqldpvdalpvktldgklyyrtrpkpenggdenevgegekdgggnegIIKLTKAERRAKLKKSKKEAKKEgkklskpeeaeqapQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIArddnpsisklgFLSLLAVFKdiipgyrirlptekeLEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNlldavphfncCEILLEVVVRNLGSQDVVVRKLCCATIKSLftnegkhggvATVEAVRLIANHVkvkncqlhpDFVEVFMSlsfdedlqrrevpddkskvknkknnkrksieepsqLQQNERKKNKKELMLKTREEVAAEYKAaslapdvmeKRRMQTETISAVFETYFRILKHTMMFTAVsseanassiggasgahpllapclkglgkfshliDLDYIGDLMNYLKRLagggssndgpsqknsnhltVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILeyrpgrdqGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCrnllendagggsvsgsisiyqpyamdpnlsGALASVLWEINLLSkhyhpsistaassIAGMNSAHNQVYHAILSPQQAFMDLLLEResfnsksdtqksssrrkrgngtsILANTelssnmsgsidenevskkLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYKqqkktgstktkkcKKLLIA

mgkkqkqkiilppelppeiLEDEIEVSDEDLQFVSENRDYAGfvsrldthsitkhvtrvadkrlrktsvlkenedkglqldpvdalpvktldgklyyrtrpkpenggdenevgegekdgggnegiikltkaerraklkkskkeakkegkklskpeeaeqapqvaVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPgyrirlptekelemkvskevkKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKslftnegkhggVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSfdedlqrrevpddkskvknkknnkrksieepsqlqqnerkknkkeLMLKTREEVAAEykaaslapdvmekrrMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAgggssndgpsqknsnhltVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERESFnsksdtqksssrrkrgngtsilantelssnmsgsiDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHlydeykqqkktgstktkkckkllia

MGKKQKQKiilppelppeiledeieVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRVADKRLRKTSVLKENEDKGLQLDPVDALPVKTLDGKLYYRTRPKPenggdenevgegekdgggnegIIKLTkaerraklkkskkeakkegkklskPEEAEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDkskvknkknnkrkSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTMMFTAVsseanassiggasgaHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAgggsvsgsisiYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERESFNSKSDTQKSSSRRKRGNGTSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYkqqkktgstktkkckkLLIA

******************************LQFVSENRDYAGFVSRLDTHSITKHVTRVAD*********************VDALPVKTLDGKLYY***************************************************************************LTAEELFESKKCKLAELGMALLA************LQIA****PSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSF**************************************************************************ETISAVFETYFRILKHTMMFTAVSSE*****IGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLA****************LTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNL****************YQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLL***************************************************HFMLLRNI************ATLSLHLY***********************

*************************VSDEDLQFVSENRDY***********************************************VKTLDGK****************************************************************************************KCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRL**************KKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQ**********************************************************************TISAVFETYFRILK************************PLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASS*****************PQQAFMDLLLERE************************************************HFMLLRNIKENERLRDELDRATLSLHLY*******************LLI*

MGKKQKQKIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRVADKRLRKTSVLKENEDKGLQLDPVDALPVKTLDGKLYYRTRPKPENGGDENEVGEGEKDGGGNEGIIKLTKAE******************************VAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQR***********************************KKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGG************NHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERES*****************NGTSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYK*******************

*******KIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTR****RLR********************************************************NE****************************************AVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDKSKVKNKKNNKRKSIEE*SQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTM*******************AHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGS**********NHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMN**HNQVYHAILSPQQAFMDLLLERESFNSKSDTQKS********GTSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYKQQKKTGSTKTKKCKKLLI*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		833	2.2.26 [Sep-21-2011]
Q6DRN3		800	Nucleolar complex protein	yes	no	0.679	0.707	0.310	4e-64
Q8VI84		807	Nucleolar complex protein	yes	no	0.631	0.651	0.313	2e-61
Q91Y26		800	Nucleolar complex protein	yes	no	0.635	0.661	0.298	3e-61
Q8WTT2		800	Nucleolar complex protein	yes	no	0.576	0.6	0.316	1e-60
Q5R952		800	Nucleolar complex protein	yes	no	0.576	0.6	0.314	1e-59
Q5XGZ8		795	Nucleolar complex protein	N/A	no	0.637	0.667	0.300	4e-55
Q9VI82		822	Nucleolar complex protein	yes	no	0.590	0.598	0.242	1e-39
O94288		747	Nucleolar complex-associa	yes	no	0.589	0.657	0.275	8e-39
Q07896		663	Nucleolar complex-associa	yes	no	0.593	0.745	0.255	1e-35
P91136		778	Nucleolar complex protein	yes	no	0.573	0.614	0.249	4e-32

>sp\|Q6DRN3\|NOC3L_DANRE Nucleolar complex protein 3 homolog OS=Danio rerio GN=noc3l PE=2 SV=1	Back alignment and function desciption

 Score =  246 bits (629), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 203/654 (31%), Positives = 313/654 (47%), Gaps = 88/654 (13%)

Query: 151 LSKPEEAEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQI 210
           L K EE E AP +    + ++   A++L E KK ++A L  A+LADP  NIK LKE+  +
Sbjct: 186 LQKEEEPESAPLLTPQEQFEQ--RAQKLME-KKLRIAALSSAILADPHVNIKKLKELRAM 242

Query: 211 ARDDNP----SISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLL 266
             + +P    ++ KL  +SL+ VFKDI+P YRIR  TE+E   KV KE  ++R +E  L+
Sbjct: 243 LMETDPCVAVTVRKLVMVSLMEVFKDIVPAYRIRPLTEEEKAAKVKKETLQLREFEEGLV 302

Query: 267 SAYKAYLQKLIASEK----------QPV-------FHQVVVRCICNLLDAVPHFNCCEIL 309
           S YK YL++L  + K          Q V         +V VRCIC LL A+PHFN    +
Sbjct: 303 SQYKFYLEELEQTVKDWKQKKEKRSQAVSLQSYKGLAEVAVRCICELLVALPHFNFHNNI 362

Query: 310 LEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDF 369
           + ++V  +   D  V ++CC  +K L   +    G A++  V++I+  VK +N ++ P  
Sbjct: 363 IVMLVPLMNDSDKKVSEMCCEAVKKLLKQDK--VGQASLAMVKVISGMVKSRNYRIKPVV 420

Query: 370 VEVFMSLSFDEDLQRREVPDDKSKVKNKK-NNKRKSIEEPSQLQQNERKKNKKELMLKTR 428
           +   + L   E   +++  D   K K      KRK++    +  +   +K +KEL+    
Sbjct: 421 LNCLLCLRIKEVDMKKDTEDTAPKKKFMSFKEKRKNLSRMQRKWKKAEEKLQKELL---- 476

Query: 429 EEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGAS 488
           E  A E K         +K ++ TET++ VF  YFRILK          +A  S      
Sbjct: 477 EAEATESKE--------KKIKLHTETLNVVFLIYFRILK----------KAQKSV----- 513

Query: 489 GAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLR 548
               LL+  L+GL KF+HLI+L++  DL+  L  L   G             LT  E L 
Sbjct: 514 ----LLSSVLEGLAKFAHLINLEFFDDLLAVLYNLITSGD------------LTYRESLH 557

Query: 549 CCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPG--RDQGEVLAEALKIMLCDDR-Q 605
           C + +F ++    D LN+D   F+  LY  +L    G   +   ++ + L +ML   R Q
Sbjct: 558 CILTSFHILSGQGDVLNIDPLKFYSHLYRTLLTLHAGGVNEDTVIVLQCLDVMLSKRRKQ 617

Query: 606 HDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSIS 665
             +Q+A AF+KRL T +L +     +  L   + L+Q   KC  LL+N+  G  V     
Sbjct: 618 VTLQRAQAFLKRLNTVALHLLPDSCVGILAANRMLMQTFPKCDILLDNETQGSGV----- 672

Query: 666 IYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAI------ 719
            Y P    P       + LWE++LL  HYHP +   A+ +  M  A ++   A+      
Sbjct: 673 -YLPELDVPEYCNPQNTALWELHLLKSHYHPVVRKFAAHL--MKGAPSEGSGALGVELSR 729

Query: 720 LSPQQAFMDLLLERESFNSKSDTQKSSSRRKRGNGTSILANTELSSNMSGSIDE 773
            SP Q F D  ++  SFN       S  +     G + L ++ELS  +  ++ E
Sbjct: 730 RSPLQLFEDYSVKDMSFNPPVAGPPSKKKEYFTIGHAFL-HSELSRQIDAALQE 782

Danio rerio (taxid: 7955)

>sp\|Q8VI84\|NOC3L_MOUSE Nucleolar complex protein 3 homolog OS=Mus musculus GN=Noc3l PE=2 SV=2	Back alignment and function description

>sp\|Q91Y26\|NOC3L_CRIGR Nucleolar complex protein 3 homolog OS=Cricetulus griseus GN=NOC3L PE=2 SV=1	Back alignment and function description

>sp\|Q8WTT2\|NOC3L_HUMAN Nucleolar complex protein 3 homolog OS=Homo sapiens GN=NOC3L PE=1 SV=1	Back alignment and function description

>sp\|Q5R952\|NOC3L_PONAB Nucleolar complex protein 3 homolog OS=Pongo abelii GN=NOC3L PE=2 SV=1	Back alignment and function description

>sp\|Q5XGZ8\|NOC3L_XENLA Nucleolar complex protein 3 homolog OS=Xenopus laevis GN=noc3l PE=2 SV=1	Back alignment and function description

>sp\|Q9VI82\|NOC3L_DROME Nucleolar complex protein 3 homolog OS=Drosophila melanogaster GN=CG1234 PE=1 SV=1	Back alignment and function description

>sp\|O94288\|NOC3_SCHPO Nucleolar complex-associated protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=noc3 PE=1 SV=1	Back alignment and function description

>sp\|Q07896\|NOC3_YEAST Nucleolar complex-associated protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOC3 PE=1 SV=1	Back alignment and function description

>sp\|P91136\|NOC3L_CAEEL Nucleolar complex protein 3 homolog OS=Caenorhabditis elegans GN=C37H5.5 PE=3 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		833
225465034		857	PREDICTED: nucleolar complex protein 3 h	0.975	0.948	0.695	0.0
297736168		848	unnamed protein product [Vitis vinifera]	0.975	0.958	0.695	0.0
449493020		825	PREDICTED: nucleolar complex protein 3 h	0.966	0.975	0.656	0.0
449444134		825	PREDICTED: nucleolar complex protein 3 h	0.966	0.975	0.654	0.0
255544638		831	Nucleolar complex-associated protein, pu	0.969	0.972	0.681	0.0
356542545		828	PREDICTED: nucleolar complex protein 3 h	0.973	0.979	0.658	0.0
356534193		831	PREDICTED: nucleolar complex protein 3 h	0.975	0.978	0.662	0.0
357506197		838	Nucleolar complex protein-like protein [	0.984	0.978	0.632	0.0
147827391		786	hypothetical protein VITISV_000380 [Viti	0.889	0.942	0.683	0.0
297842705		826	hypothetical protein ARALYDRAFT_895820 [	0.943	0.951	0.616	0.0

>gi\|225465034\|ref\|XP_002266128.1\| PREDICTED: nucleolar complex protein 3 homolog [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/837 (69%), Positives = 689/837 (82%), Gaps = 24/837 (2%)

Query: 1   MGKKQK-QKIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRV 59
           MGKK+K QKIILPP+LPPEI EDE+EVSDEDLQF  ENRDYAGFVS LDTHSIT+HV+RV
Sbjct: 10  MGKKKKRQKIILPPDLPPEIPEDEVEVSDEDLQFFDENRDYAGFVSTLDTHSITRHVSRV 69

Query: 60  A-----------DKRLRKTSVLKENEDKGLQLDPVDALPVKTLDGKLYYRTRPK-PENGG 107
           A           ++RL+K +  K+ E+  LQ+DPVDALPVKTLDG+LYYRT PK P++  
Sbjct: 70  ANVKEDALEALYERRLKKKAAEKQKEESALQVDPVDALPVKTLDGELYYRTAPKKPKDS- 128

Query: 108 DENEVGEGEKDG-GGNEG----IIKLTKAERRAKLKKSKKEAKKEGKKLSKPEEAEQAPQ 162
            EN   + E DG  GNEG    I+KLTKAERRAKLKKSKKEAKK+GK+L K E+ +Q PQ
Sbjct: 129 -ENAADKYEADGEDGNEGVDKSIVKLTKAERRAKLKKSKKEAKKQGKELDKTEDVQQTPQ 187

Query: 163 VAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLG 222
            A LAEVK+DLTAEE FESKK KLAELGMALLADPE+NIK+LKEMLQI++DD+ +I KL 
Sbjct: 188 AAALAEVKQDLTAEETFESKKRKLAELGMALLADPEANIKTLKEMLQISKDDDQAIVKLA 247

Query: 223 FLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQ 282
            LSLLAVFKDIIPGYRIRLPTEKELEM VSKEVKK R+YESTLLS YKAYLQKL+A E+Q
Sbjct: 248 LLSLLAVFKDIIPGYRIRLPTEKELEMTVSKEVKKKRYYESTLLSTYKAYLQKLMALERQ 307

Query: 283 PVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKH 342
             F  +V RCIC LLDAVPHFN  E LL  V++N+GS D VVRKLCCAT+KSLFTN+GKH
Sbjct: 308 ASFQHIVYRCICTLLDAVPHFNFRESLLAAVIKNIGSSDDVVRKLCCATVKSLFTNDGKH 367

Query: 343 GGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDKSKVKNKKNNKR 402
           GG ATVEAV+LIA+HVK  +CQLHPD +EVFM L+FDEDL R E P++ +KVK+KKN KR
Sbjct: 368 GGEATVEAVQLIADHVKAHDCQLHPDSIEVFMYLTFDEDLGRPENPNEDNKVKSKKNKKR 427

Query: 403 KSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETY 462
           K+ EE  +LQ+ ++KKN++EL+ K REEV A+++AAS APDV E+R MQ+E +SAVFETY
Sbjct: 428 KNREESGELQERDKKKNRQELVTKMREEVNADFRAASFAPDVKERRMMQSEALSAVFETY 487

Query: 463 FRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKR 522
           FRILKH+M   +V SE N SS+ GASG HPLL PCL GLGKFSHLIDLD++GDLMN L++
Sbjct: 488 FRILKHSMRQISVRSEENGSSLPGASGNHPLLVPCLIGLGKFSHLIDLDFMGDLMNCLRK 547

Query: 523 LAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEY 582
           LA G S++DG   K    LTV+ERLRCCIVAF+VMRNNL+ALNVDLQ+FF+QLYNL +EY
Sbjct: 548 LACGSSNSDGSCNK---LLTVSERLRCCIVAFKVMRNNLEALNVDLQEFFIQLYNLSIEY 604

Query: 583 RPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQ 642
           RPGRDQGEVLAEALKIMLCDDRQHDMQKAAAF+KRLATFSL  GSAESMAALVTLK+LLQ
Sbjct: 605 RPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFIKRLATFSLCFGSAESMAALVTLKHLLQ 664

Query: 643 KNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAA 702
           KN+KCR+LLENDAGG SV GSI  YQPYA DP+ SGALASVLWE+NLLSKHYHP++ST A
Sbjct: 665 KNVKCRHLLENDAGGCSVLGSIVKYQPYASDPSQSGALASVLWELNLLSKHYHPAVSTMA 724

Query: 703 SSIAGMNSAHNQVYHAILSPQQAFMDLLLERESF-NSKSDTQKSSSRRKRGNGTSILANT 761
           S+++GM++ HNQVY A +SPQQAF DL LE ESF N K+   KS+ +RKRG+G+S  A+ 
Sbjct: 725 SNVSGMSTGHNQVYLATVSPQQAFADLSLEHESFINPKNIVMKSNHKRKRGSGSSGAASI 784

Query: 762 ELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYKQQKK 818
             + + +  IDE+ + KKL +HF +L +IKENERLR ELDR TLSL +Y+E+K +KK
Sbjct: 785 NPTPDAATPIDEDGLRKKLSEHFTILHDIKENERLRGELDRVTLSLQVYEEHKNRKK 841

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297736168\|emb\|CBI24206.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449493020\|ref\|XP_004159169.1\| PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449444134\|ref\|XP_004139830.1\| PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255544638\|ref\|XP_002513380.1\| Nucleolar complex-associated protein, putative [Ricinus communis] gi\|223547288\|gb\|EEF48783.1\| Nucleolar complex-associated protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356542545\|ref\|XP_003539727.1\| PREDICTED: nucleolar complex protein 3 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|356534193\|ref\|XP_003535642.1\| PREDICTED: nucleolar complex protein 3 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|357506197\|ref\|XP_003623387.1\| Nucleolar complex protein-like protein [Medicago truncatula] gi\|355498402\|gb\|AES79605.1\| Nucleolar complex protein-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|147827391\|emb\|CAN70879.1\| hypothetical protein VITISV_000380 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297842705\|ref\|XP_002889234.1\| hypothetical protein ARALYDRAFT_895820 [Arabidopsis lyrata subsp. lyrata] gi\|297335075\|gb\|EFH65493.1\| hypothetical protein ARALYDRAFT_895820 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		833
TAIR\|locus:2207370		830	AT1G79150 [Arabidopsis thalian	0.765	0.768	0.615	2.1e-224
UNIPROTKB\|F1MP56		799	NOC3L "Uncharacterized protein	0.410	0.428	0.3	1.6e-51
RGD\|1560656		799	Noc3l "nucleolar complex assoc	0.410	0.428	0.296	3.9e-51
UNIPROTKB\|F1SC66		809	NOC3L "Uncharacterized protein	0.410	0.422	0.297	2.3e-50
UNIPROTKB\|E2QZX4		799	NOC3L "Uncharacterized protein	0.410	0.428	0.309	1.2e-49
UNIPROTKB\|E1BXA0		748	NOC3L "Uncharacterized protein	0.404	0.450	0.309	5.2e-49
MGI\|MGI:1932610		807	Noc3l "nucleolar complex assoc	0.410	0.423	0.291	6.2e-49
UNIPROTKB\|Q8WTT2		800	NOC3L "Nucleolar complex prote	0.410	0.427	0.295	8.6e-48
ZFIN\|ZDB-GENE-030131-9878		800	noc3l "nucleolar complex assoc	0.403	0.42	0.297	9.4e-47
POMBASE\|SPBC887.03c		747	noc3 "Noc2p-Noc3p complex subu	0.339	0.378	0.290	3e-36

TAIR\|locus:2207370 AT1G79150 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1999 (708.7 bits), Expect = 2.1e-224, Sum P(2) = 2.1e-224
 Identities = 398/647 (61%), Positives = 497/647 (76%)

Query:   155 EEAEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDD 214
             +E E+ PQ AVLAEVKE+L+AEE FE+KK K+AELGM LL+DPE+NIK+LK+ML I +D 
Sbjct:   163 QEEEETPQAAVLAEVKEELSAEESFENKKNKIAELGMLLLSDPEANIKTLKDMLDICKDQ 222

Query:   215 NPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQ 274
             N  I KL  LSLLAVFKDIIPGYRIRLPTEKELEMK+SKEVKK RFYESTLL AYK+YLQ
Sbjct:   223 NTKIVKLALLSLLAVFKDIIPGYRIRLPTEKELEMKISKEVKKTRFYESTLLKAYKSYLQ 282

Query:   275 KLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKS 334
             KLI  EKQ V++Q+  RC+C LL+AVPHFN  + LL  VVRN+ S D VVR+LCC+TI+ 
Sbjct:   283 KLIIFEKQSVYNQIANRCLCTLLEAVPHFNYRDNLLIAVVRNISSPDEVVRRLCCSTIRY 342

Query:   335 LFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDXXXX 394
             LF+NEGKHGG  TV+AVRLIA+HVK  NCQLHP+ +EVFMS+ FDED+ +    D+    
Sbjct:   343 LFSNEGKHGGELTVQAVRLIADHVKAHNCQLHPNAIEVFMSIRFDEDIGKPNKEDEHNKK 402

Query:   395 XXXXXXXXXSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTET 454
                        EE +Q+Q+NERKK+KK++M K R+EV+A+++  +  PD  E+R+MQTET
Sbjct:   403 YKKNNKRKTQ-EEQNQVQENERKKSKKDMMSKIRDEVSADHRGVTYEPDAKERRKMQTET 461

Query:   455 ISAVFETYFRILKHTMMFTAVXXXXXXXXXXXXXXXHPLLAPCLKGLGKFSHLIDLDYIG 514
             +SAVFETYFRIL++TM                    HPLLAPCL GL KF+  +DLDY+G
Sbjct:   462 LSAVFETYFRILRNTMYTIGERTEEIPTSNPGAFGSHPLLAPCLDGLAKFTQQLDLDYMG 521

Query:   515 DLMNYLKRLAGGGSS-NDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFV 573
             DLMNYLK+LA   SS ++   QKNS  LTV+ERLRCC+VAF+VMR+NL+ALNVDLQDFFV
Sbjct:   522 DLMNYLKKLASSSSSVSNNTKQKNSKLLTVSERLRCCLVAFKVMRSNLNALNVDLQDFFV 581

Query:   574 QLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAA 633
             QLYNLILEYRPGRD G +LAE+LKIMLCDDR  DMQKAAAFVKRLATF+L  G AESM+A
Sbjct:   582 QLYNLILEYRPGRDSGVILAESLKIMLCDDRHQDMQKAAAFVKRLATFALCFGCAESMSA 641

Query:   634 LVTLKNLLQKNIKCRNLLENDAXXXXXXXXXXXYQPYAMDPNLSGALASVLWEINLLSKH 693
             LVTLK LLQKN+KCRNLLENDA           YQPYA DPNLSGALA+VLWE++LLSKH
Sbjct:   642 LVTLKTLLQKNVKCRNLLENDAGGGSVSGSIAKYQPYATDPNLSGALATVLWELSLLSKH 701

Query:   694 YHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERESFNSKSDTQKSSSRRKRGN 753
             YHP+IST A++++ MN++ +Q + + ++PQQAF D  L +ESF  K++++K +++RKR  
Sbjct:   702 YHPAISTMATTVSNMNTSQSQTFLSAVTPQQAFADFSLVKESFEPKNESRKLNNKRKR-- 759

Query:   754 GTSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDEL 800
               S+    E + N+   ID  ++SKKL ++F +LR+IKE+ER+R EL
Sbjct:   760 -ESL---PEEAKNVP-EIDMVKLSKKLKENFTILRDIKEDERVRMEL 801

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

UNIPROTKB\|F1MP56 NOC3L "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1560656 Noc3l "nucleolar complex associated 3 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SC66 NOC3L "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QZX4 NOC3L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXA0 NOC3L "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1932610 Noc3l "nucleolar complex associated 3 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8WTT2 NOC3L "Nucleolar complex protein 3 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-9878 noc3l "nucleolar complex associated 3 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

POMBASE\|SPBC887.03c noc3 "Noc2p-Noc3p complex subunit Noc3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00035711001	SubName- Full=Chromosome undetermined scaffold_80, whole genome shotgun sequence; (843 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)	•		0.459
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)	•		0.434
	GSVIVG00036355001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)	•		0.432
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)	•		0.426
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)	•		0.424
	GSVIVG00000599001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (357 aa)		•	0.417
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)	•		0.415
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)	•		0.415
	GSVIVG00021349001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)	•		0.413
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)	•		0.411

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		833
COG5117		657	COG5117, NOC3, Protein involved in the nuclear exp	3e-56
pfam07540		95	pfam07540, NOC3p, Nucleolar complex-associated pro	2e-32
pfam03914		151	pfam03914, CBF, CBF/Mak21 family	3e-29

>gnl\|CDD\|227447 COG5117, NOC3, Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]	Back alignment and domain information

 Score =  205 bits (522), Expect = 3e-56
 Identities = 156/652 (23%), Positives = 268/652 (41%), Gaps = 91/652 (13%)

Query: 97  YRTRPKPENGGDENEVGEGEKDGGGNEGIIKLTKAERRAKLKKSKKEAKKEGKKLSKPEE 156
           Y  RP+  +    NE          +  +  +   E    L +S+ EA  E       + 
Sbjct: 58  YELRPR-VSSSWNNESYNRLPIKTKDNVVADVNNGEE--FLSESESEASLE----IDSDI 110

Query: 157 AEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNP 216
            ++  +     ++  ++  ++  +S+K ++A +   ++ +PE N+  ++E+  +      
Sbjct: 111 KDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICTKIIEEPEENLGMMEEVFSMITSMAE 170

Query: 217 SISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL 276
              K+ +LSLL VFK IIPGY+IR   E+E  +K SKEV  ++ YE +LL  Y +Y++ L
Sbjct: 171 KAKKVSYLSLLKVFKAIIPGYKIRPLKEEEQMVKDSKEVLHLKDYEQSLLRWYTSYIKTL 230

Query: 277 I--------ASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRN-LGSQDVVVRKL 327
           +          E Q   +QV    +C L+    HFNC + +  +V+R  LG+    V  L
Sbjct: 231 VDDVKDESTLDETQSSLYQVAYISLCELIQHASHFNCTDKVFSLVLRGILGTTKRPVSML 290

Query: 328 CCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREV 387
              TIKS    E    G  ++ A  +     K +N  +    +++ +S     +  R E 
Sbjct: 291 IIDTIKSKL--EEDCTGKTSLVATVIDQMLDKERNPLVLEYVLDIPLSD----NSLRDEE 344

Query: 388 PDDKSKVKNKKNNKRKSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEK 447
              K    NK  +KR+  +    L +  R K +KE     R  + +E + A    + +E+
Sbjct: 345 KARKYWEANKPVSKREKKDIF-HLSKKLR-KIEKE-----RLRIQSEMRDAEDIEEAIEE 397

Query: 448 RRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHL 507
            + Q+E +  +F  YF +LK                         L+   L+GL K+  +
Sbjct: 398 EKNQSEILKIIFRLYFMVLK--------------------GDRKDLIGYVLEGLVKYRKI 437

Query: 508 IDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNL-DALNV 566
           I+ +++GDL+  L  L      ND P  K S+     + L C + AF +    L    N 
Sbjct: 438 INPEFLGDLLEVLYELL-----NDNPLDKISSDARR-QALLCILTAFEIASATLYGKENY 491

Query: 567 DLQDFFVQLYNLI----------LEYRPGRD----------------QGEVLAEALKIML 600
           DL  F   LY+++          L  +  R                   E L + ++++ 
Sbjct: 492 DLGGFVDLLYSMVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEELLKIVRLLF 551

Query: 601 CDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLL--ENDAGGG 658
              +Q   ++   F KRL             A L     L  +   C NL   E D G G
Sbjct: 552 FKSKQPVHRRHVIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSEFDIGAG 611

Query: 659 SVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNS 710
                         +P+LS +  +VL+E  LL +HY P++S +A  +    S
Sbjct: 612 -------NVDSIPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKELLKSTS 656

Length = 657

>gnl\|CDD\|219459 pfam07540, NOC3p, Nucleolar complex-associated protein	Back alignment and domain information

>gnl\|CDD\|217788 pfam03914, CBF, CBF/Mak21 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		833
KOG2153		704	consensus Protein involved in the nuclear export o	100.0
COG5117		657	NOC3 Protein involved in the nuclear export of pre	100.0
KOG2038		988	consensus CAATT-binding transcription factor/60S r	100.0
COG5593		821	Nucleic-acid-binding protein possibly involved in	100.0
PF03914		164	CBF: CBF/Mak21 family; InterPro: IPR005612 This do	100.0
KOG2154		505	consensus Predicted nucleolar protein involved in	99.96
PF07540		95	NOC3p: Nucleolar complex-associated protein; Inter	99.95
KOG2153		704	consensus Protein involved in the nuclear export o	99.27
KOG2038		988	consensus CAATT-binding transcription factor/60S r	90.94
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	88.91
PTZ00429		746	beta-adaptin; Provisional	88.65
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	88.52
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	87.05
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	81.78
PTZ00429		746	beta-adaptin; Provisional	81.1

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.5e-103  Score=881.68  Aligned_cols=663  Identities=35%  Similarity=0.514  Sum_probs=562.6

Q ss_pred             Ccc-cccccccCCCCCCCCCCccccccCchhhHHhhhcccchhhhhccCcchhhhhhhcc----hH----HHhhhhhhhh
Q 003294            1 MGK-KQKQKIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRV----AD----KRLRKTSVLK   71 (833)
Q Consensus         1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~sd~d~~f~~~~~~~~~f~~~ld~~~~~~~~~~~----~~----~r~~~~~~~~   71 (833)
                      ||. ++|+++|.||.+||+.-......|++|..+.+++..|+.+++++|...++......    +|    ++.+++.-..
T Consensus         1 ~~~~~~k~~~~k~~~~~~~~k~~~~qf~~~~~k~~k~~~~~~~~~s~~~~~~~n~k~~~~~~~~ee~~~e~~~~~~~l~~   80 (704)
T KOG2153|consen    1 KKSNRRKQAVIKPKKLPLSVKRNNSQFSDEDRKTRKKGTDYAREVSQLDIAAFNNKCGSLVMTEEEDEDEEREKRKILDL   80 (704)
T ss_pred             CCCCcchhhccCCccCChhHHHHhhhhhhhhHHHHhhhhHHHHHhhhhhHHhhcccccccccCCcccccccchhhhhhhh
Confidence            566 78889999999999999999999999999999999999999999999887755443    22    2323222222


Q ss_pred             hccccCCCCCCCCCCCccCCCCcccccCC------CCCCCCCCCCccCCCCCCCCCCchhhhhhHHHHHHHHhhhhHHHh
Q 003294           72 ENEDKGLQLDPVDALPVKTLDGKLYYRTR------PKPENGGDENEVGEGEKDGGGNEGIIKLTKAERRAKLKKSKKEAK  145 (833)
Q Consensus        72 ~~~~~~~~~~~~~~lp~k~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (833)
                      .+--..+..+|++..|.+++||..+|++.      |++... |..+. ....+++.-|+       -++.+-++.+.+++
T Consensus        81 ~k~~~~~~~~~~s~~ee~~~d~~~~~~~e~~ye~~pr~~~~-~~k~~-~~~lpIk~k~~-------~~~~~~k~~e~~~~  151 (704)
T KOG2153|consen   81 KKSNGEILTRPLSSDEEKTLDGKKHYRTEQDYEKLPRKEQD-AEKEL-LELLPIKNKDP-------VRRQKAKKEERESD  151 (704)
T ss_pred             ccccchhhccccccCcccCccccccchhHHHHhhccccccc-hHHhh-hhcCccccCCc-------cchhhhcccccccc
Confidence            22224556778899999999999998753      333222 22222 44566665554       23334344444443


Q ss_pred             HhccCCCChh--hhhccchHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHhhccChhhHHHHH
Q 003294          146 KEGKKLSKPE--EAEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGF  223 (833)
Q Consensus       146 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~KdkIAaL~~~IledPe~ni~~Lk~L~~m~~~~~~~vrkLAi  223 (833)
                      +...+.++++  +.++.|++++.++++++|++++.|++.|.+||++|+.|++||+.|++.|.+|+.||.+.++.++++++
T Consensus       152 ~~eed~~~e~~~e~de~~~~~~ea~~~e~l~~~~~i~n~K~kIA~l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~  231 (704)
T KOG2153|consen  152 DDEEDLDEEDSDEDDETPNAAEEAEIKEELPREEKIENKKEKIASLCSKLLENPEENLKKLKELFEMLDSQNPKAKKLAL  231 (704)
T ss_pred             cchhcccchhccccccccCHHHHhhcchhcchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHH
Confidence            3333333222  47889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------chHHHHHHHHHH
Q 003294          224 LSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQP--------VFHQVVVRCICN  295 (833)
Q Consensus       224 lSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~~~--------~l~~~Avkclc~  295 (833)
                      +||++||+|||||||||++|+.|+.++++|+|+.+|.||++|+++|.+|||.|+.+.++.        ++.++|++|+|+
T Consensus       232 lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~  311 (704)
T KOG2153|consen  232 LSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACE  311 (704)
T ss_pred             HHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998887        678999999999


Q ss_pred             HhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHhhhhcCCCCCHHHHHHhhc
Q 003294          296 LLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMS  375 (833)
Q Consensus       296 LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~sleiVr~I~~~vK~k~~~v~p~vl~~fL~  375 (833)
                      |+..+|||||++||+.++|+.++++...++..||.+++.+|.+|.  .|.+|+.+||.|+.++|.++|+|+|+++.||++
T Consensus       312 Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~--~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~ls  389 (704)
T KOG2153|consen  312 LLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDN--GGSGSLAIVRIINSLLKTRNYEVLPDMITTFLS  389 (704)
T ss_pred             HHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCC--ccchhHHHHHHHHHHhhhhcccchhhHHHHHHh
Confidence            999999999999999999999999999999999999999999994  899999999999999999999999999999999


Q ss_pred             ccccccccccCCCcchhhhhhhhcccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhccCCCHHHHhhhhHHHH
Q 003294          376 LSFDEDLQRREVPDDKSKVKNKKNNKRKSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETI  455 (833)
Q Consensus       376 Lr~~e~l~~~~~~~~~~~~K~kk~kkrk~~e~~~~ls~~~~KK~kKel~~K~~kele~El~Eaea~~d~~er~K~qteiL  455 (833)
                      |+++++....+.++.....+.++.+     +...++++++||+      +|.+.++++|+++++|.++.+++.++|||||
T Consensus       390 Lri~ed~~~k~ke~~~k~~~~k~~k-----~k~~~lskK~RK~------kKe~~ki~rE~reaea~e~aeek~k~~sEiL  458 (704)
T KOG2153|consen  390 LRIDEDQTKKDKEDEKKQKNKKSSK-----KKLSSLSKKERKR------KKERNKIEREMREAEAEESAEEKMKKQSEIL  458 (704)
T ss_pred             cchhhhccchhhhccchhhhHHHHH-----HHHhhccHHHHHH------HHHHHHHHHHhhhhhccccHHHHHHHHHHHH
Confidence            9999988876654442111111111     1223567777663      4457899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccccccccccccCCCCCCCccchHHHHhhhhhccccCChhhHHHHHHHHHHHhcCCCCCCCCCC
Q 003294          456 SAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQ  535 (833)
Q Consensus       456 ~~vF~iYFRILK~~~~~~~~~~~~~~~a~p~a~~~s~LL~~vLeGL~KfaHlIN~df~~DLl~vL~~Li~~~~~~~~~~~  535 (833)
                      ++||.|||||||...                   -+ +|+++|+||++|+|+||++|++||+.+|+.++..         
T Consensus       459 kiVFtiYFrILkn~~-------------------~t-ll~~vlEGlakf~h~invef~~dll~vlk~ll~d---------  509 (704)
T KOG2153|consen  459 KIVFTIYFRILKNDR-------------------YT-LLGAVLEGLAKFAHLINVEFLGDLLKVLKELLED---------  509 (704)
T ss_pred             HHHHHHHHHHHhcch-------------------hh-HHHHHHhhHHHHhhhccHHHhhhHHHHHHHHHHh---------
Confidence            999999999999983                   34 9999999999999999999999999999999965         


Q ss_pred             CCCCccchhhHHHHHHHHHHHHhhccccccCChHHHHHHHHHhhhccCCCCCh--HHHHHHHHHHHhhcccCCcHHHHHH
Q 003294          536 KNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQ--GEVLAEALKIMLCDDRQHDMQKAAA  613 (833)
Q Consensus       536 ~~~~~ls~~~~L~ci~taf~LL~~~g~alnvD~~rFY~~LY~~L~~~~~~~~~--~~~ll~~L~~~L~~~~~~~~~RVAA  613 (833)
                         +.++++++|+|++|||.||+|||+.+|+|+..||.+||++|++++.+.+.  ...+++|++.+|.++++ ++.+|.+
T Consensus       510 ---~~~~~re~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~-~v~~~~~  585 (704)
T KOG2153|consen  510 ---IELSYREALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRK-PVVNVIT  585 (704)
T ss_pred             ---hhHHHHHHHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhh-hHHHHHH
Confidence               46899999999999999999999999999999999999999998877643  34688999999988776 4555999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHhhccccccccccccCCCCcccCCCCCCCCCCCCCCCCCCchhHHHHHHHhhC
Q 003294          614 FVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKH  693 (833)
Q Consensus       614 FiKRLl~~sL~~p~~~ala~L~lI~~Ll~~~P~l~~LLe~e~~~~~v~g~~~~Ydp~~~DPe~~nA~~S~LWEL~lL~~H  693 (833)
                      |++||+++++|+-+...+    +.+..++.++.|..|++.+.                  |+||++.++.|||+.+++  
T Consensus       586 ~~~~Ll~~~~h~~~~s~~----~s~~~~~~fsk~~~~~~~~~------------------pe~~s~a~~al~e~~l~r--  641 (704)
T KOG2153|consen  586 KMERLLKCSLHVFFNSKL----ISKYRDIEFSKRLNLLDSET------------------PEYCSIASLALFEKLLLR--  641 (704)
T ss_pred             HHHHHHHHHHHHhhcccc----hHHHHHHHhhhhhhhhhccC------------------ccccccccHHHHHHHHHh--
Confidence            999999999998876655    77888999999999987651                  999999999999999999  


Q ss_pred             cChHHHHHHHHhhcC-C---CCCCccccCCCChHHHHHhcccccccccCCCCCc
Q 003294          694 YHPSISTAASSIAGM-N---SAHNQVYHAILSPQQAFMDLLLERESFNSKSDTQ  743 (833)
Q Consensus       694 yHPsV~~~A~~i~~~-~---~~~~~~~l~~~~p~e~~~~~~~~~~~f~p~~~~~  743 (833)
                      |||.|+.||.++.-+ +   ++..+|++|+.+..+||+. +..+|.|||+||.|
T Consensus       642 y~~~~~~~a~~~~~G~~~~~~~a~~p~~s~~sa~~L~~~-~~~~~~~~P~v~~~  694 (704)
T KOG2153|consen  642 YHPISRLMASEIAIGVGATGEGALPPELSNLSAAELFEQ-DLLEMHYNPTVPLS  694 (704)
T ss_pred             cchHHHHHHHHHhhcCCccCcCCCCccccCchHHHHhhh-HHHHhccCCCCCch
Confidence            999999999999433 3   3456899999999999999 99999999999964

>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]	Back alignment and domain information

>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis	Back alignment and domain information

>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae []	Back alignment and domain information

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		833
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 71.8 bits (175), Expect = 6e-13
 Identities = 78/463 (16%), Positives = 146/463 (31%), Gaps = 125/463 (26%)

Query: 43  FVSRLDTHSITKHVTRVADKRLRKTSVLKENEDKGLQLDPV-DALPVKTLDG--KLYYRT 99
           + SR D  S  K         LR+    K  E+  L L  V +A      +   K+   T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 100 RPKP----ENGGDENEVGEGEKDGGGNEGIIKLTKAERRAKLKKSKKEAKKEGKKLSK-P 154
           R K      +      +               LT  E ++ L       K    +    P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMT-------LTPDEVKSLL------LKYLDCRPQDLP 319

Query: 155 EEAEQ-APQ-VAVLAE-VKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIA 211
            E     P+ ++++AE +++ L   + ++   C   +L   +    ES++  L       
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTII----ESSLNVL------- 366

Query: 212 RDDNPSISKLGFLSLLAVF-KDI-IPGYRIRL----PTEKELEMKVSKEVKK---MRFYE 262
               P+  +  F   L+VF     IP   + L      + ++ + V+K  K     +  +
Sbjct: 367 ---EPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 263 STLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDV 322
            + +S    YL+  +  E +   H+ +V           H+N                  
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVD----------HYN------------------ 454

Query: 323 VVRKLCCATIKSLFTNEG---KHGGVATVEAVRLIANHVK-VKNCQLHPDFVEVFMSLSF 378
           + +      +      +     H           I +H+K +++ +    F  VF+   F
Sbjct: 455 IPKTFDSDDL-IPPYLDQYFYSH-----------IGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 379 DEDLQRREVPDDKSKVKNKKNNKRKSIEEPSQLQQ--------------NERKKNKKELM 424
              L++        K+++       S    + LQQ               ER  N     
Sbjct: 503 ---LEQ--------KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 425 LKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILK 467
           L   EE     K   L      +  +  E   A+FE   + ++
Sbjct: 552 LPKIEENLICSKYTDLL-----RIALMAED-EAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		833
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	91.16
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	90.3
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	89.21
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	89.02
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	87.69
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	85.11
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	85.1
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	84.72
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	84.48
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	83.77
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	80.86

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=91.16  E-value=0.45  Score=49.18  Aligned_cols=141  Identities=10%  Similarity=0.096  Sum_probs=87.8

Q ss_pred             HHHhhccChhhHHHHHHHHHH-HHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-
Q 003294          208 LQIARDDNPSISKLGFLSLLA-VFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE-KQPV-  284 (833)
Q Consensus       208 ~~m~~~~~~~vrkLAilSL~~-VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~-~~~~-  284 (833)
                      ..++.+.+-..|+-|+.+|.. +... .|.  |-...                       ..|..+++.|.... +|++ 
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~-~~~--i~~~~-----------------------~~~~~~~~~L~~~l~~D~n~   75 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQ-TKK--LKSTS-----------------------QNYSNLLGIYGHIIQKDANI   75 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGG-CCC--BCCTT-----------------------CCCHHHHHHHHHHHHHCSCH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhc-CCc--cccCc-----------------------ccHHHHHHHHHHHhccCCCH
Confidence            445566777778877777776 6543 222  22100                       01334444444433 4553 


Q ss_pred             -hHHHHHHHHHHHhhcC--CCCc--hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccH-H-HHHHHHHHh
Q 003294          285 -FHQVVVRCICNLLDAV--PHFN--CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVAT-V-EAVRLIANH  357 (833)
Q Consensus       285 -l~~~Avkclc~LL~~~--PhFN--f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~s-l-eiVr~I~~~  357 (833)
                       .+..|++|+..|....  |+|+  |...++..++.+++++...|+..+..++..++..-+. ....+ + .++..|...
T Consensus        76 ~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~  154 (249)
T 2qk1_A           76 QAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEH  154 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHH
Confidence             5788888988887755  6886  9999999999999999999999999999999875210 00000 2 355556666


Q ss_pred             hhhcCCCCCHHHHHHhhc
Q 003294          358 VKVKNCQLHPDFVEVFMS  375 (833)
Q Consensus       358 vK~k~~~v~p~vl~~fL~  375 (833)
                      ++.++..+...++.++-.
T Consensus       155 l~~k~~~vk~~al~~l~~  172 (249)
T 2qk1_A          155 MKHKTPQIRMECTQLFNA  172 (249)
T ss_dssp             TTCSSHHHHHHHHHHHHH
T ss_pred             HcCCChHHHHHHHHHHHH
Confidence            666655555444444333

PyMOL of 2qk1

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		833
d1b3ua_		588	Constant regulatory domain of protein phosphatase	93.27
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	82.7

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=4.6  Score=42.48  Aligned_cols=143  Identities=11%  Similarity=0.121  Sum_probs=90.7

Q ss_pred             HHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003294          197 PESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL  276 (833)
Q Consensus       197 Pe~ni~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~L  276 (833)
                      +...-..+..+..+|.+.++.||+.|..++..+...+ +                 .+     .....|+       ..|
T Consensus       159 ~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~-~-----------------~~-----~~~~~l~-------~~l  208 (588)
T d1b3ua_         159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL-E-----------------LD-----NVKSEII-------PMF  208 (588)
T ss_dssp             HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS-C-----------------HH-----HHHHTHH-------HHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh-c-----------------HH-----HHHHHHH-------HHH
Confidence            3333334566777888899999999988888775432 1                 01     1111222       223


Q ss_pred             HHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCcc-HHHHHHH
Q 003294          277 IASEKQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVA-TVEAVRL  353 (833)
Q Consensus       277 e~l~~~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~-sleiVr~  353 (833)
                      ..+..++  ..+..|+.++..++...+...+...++..+.+.+.|++..|+..|+.+|..+...-   ..+. .-.++..
T Consensus       209 ~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~---~~~~~~~~l~~~  285 (588)
T d1b3ua_         209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV---GPEITKTDLVPA  285 (588)
T ss_dssp             HHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH---CHHHHHHTHHHH
T ss_pred             HHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh---hhhhhhhhhhHH
Confidence            3343443  56778899999998888877777788889999999999999999999888877543   1111 1235556


Q ss_pred             HHHhhhhcCCCCCHHHHHH
Q 003294          354 IANHVKVKNCQLHPDFVEV  372 (833)
Q Consensus       354 I~~~vK~k~~~v~p~vl~~  372 (833)
                      +..+++..+..|+...+..
T Consensus       286 l~~ll~d~~~~vr~~a~~~  304 (588)
T d1b3ua_         286 FQNLMKDCEAEVRAAASHK  304 (588)
T ss_dssp             HHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHH
Confidence            6666554443344333443

PyMOL of d1b3ua_