Citrus Sinensis ID: 003298

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830---
MRLATSGFNQQTQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNLTMHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQ
cccccccccccccccccccccHHHHHHcccccccccccccEEEEccccHHHHHHccccHHHccccccccccccccEEEEEEEEEccccccccEEEEEEEcccccccccccccccccccccccccccEEEEEEEccccccccccEEEccccccccccccccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHcccccccEEEEEEccccccEEEEEEEEEEEcccccccccccccccEEEEccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEccccccc
cccccccccccccccccccHHHHHHHHHcccccEccccccEEEEcccccHHHHHHHccccHHccccccccccccEEEEEEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccHHEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEEccEEEcccEEEEEEcccccEEEEEEEcccccccccccEEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHcccEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHcccHHcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHccccccccccccccEEEEEcccccEEEEcccccc
mrlatsgfnqqtqegekkclnselwhacagplvslppvgsrvvyfpqghseqvaastnkevdahipnypnlppqlICQLhnltmhadvetDEVYAQmtlqplspqeqkdvyllpaelgapnkqptnyfcktltasdtsthggfsvprraaekvfppldysqtppaqeLIARDlhdnewkfrhifrgqpkrhlltTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGirratrpqtvmpssvlssdSMHIGLLAAAAHAAatnsrftifynpraspsefvIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGtitgisdldpvrwpnshwrsvkvgwdestagerqprvslweieplttfpmysspfplrlkrpwpsglpsfhgmkdgdmsinsplmwlqggvgdqgiqslnfqgygvtpwmqprldasipglqpDVYQAMAAAALQEMRTVDSSKLASQSLLQFQqsqnvsngtasmiprqmLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVistlphlasssqsqpptlqtvasqcqqsnfsdslgnpiassdvssmHTILGSLSQAgashllnsnasnpiisssamltkqvtvdnhvpsavshcilpqveqlgaqqsNVSELasllppfpgreyssyhgsgdpqnnllfgvsidsslmgqnglpnlknisseneslslpyaasnftnnvgtdfplnsdmttsscvdesgflqssenvdqvnpptrTFVKVhksgsfgrsldiskfsSYDELRSELARMFglegqledpqrsgwqlVFVDRendvlllgddpwq
mrlatsgfnqqtqeGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNLTMHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTItgisdldpvrwpNSHWRsvkvgwdestagerqprvslweiePLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQssenvdqvnppTRTFVKvhksgsfgrsldiskFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQ
MRLATSGFNQQTQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNLTMHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLaaaahaaaTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDssklasqsllqfqqsqNVSNGTASMIPRqmlqqsqaqnallqsfqENqasaqaqllqqqlqrqhsyneqrqqqqqvqqsqqlhqlsvqpqISNVISTLPHLAsssqsqppTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLnsnasnpiisssaMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQ
******************CLNSELWHACAGPLVSLPPVGSRVVYFPQG************VDAHIPNYPNLPPQLICQLHNLTMHADVETDEVYAQMTL**********VYLLPAELG*****PTNYFCKTLTA********************************ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATR*************SMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHG****DMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAA*************************************************************************************************************************************************************************************TKQVTVDNHVPSAVSHCILPQVE************************************LLFGVS******************************************************************************************************LARMFGLE*******RSGWQLVFVDRENDVLLL******
**********************ELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAA***********NYPNLPPQLICQLHNLTMHADVETDEVYAQMTLQPL*************************FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAT********************LAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPW*
*****************KCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNLTMHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALLQSFQEN**************************************SVQPQISNVISTLP***********************NFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQ
*****************KCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNLTMHADVETDEVYAQMTLQPLS******VYLLPAE****NKQPTNYFCKTLTASD****GGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPW*SG*PSF*********************************Y*VTPW*Q****ASIPGLQPDVYQAMAAAALQE**************************************************************************************************************************************************************************************************************************************************DSSLMG***************************************************************PTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDD***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLATSGFNQQTQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNLTMHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query833 2.2.26 [Sep-21-2011]
Q6H6V4908 Auxin response factor 6 O yes no 0.965 0.885 0.669 0.0
A2X1A1908 Auxin response factor 6 O N/A no 0.965 0.885 0.669 0.0
A2YG67917 Auxin response factor 17 N/A no 0.961 0.873 0.652 0.0
Q653U3917 Auxin response factor 17 no no 0.961 0.873 0.652 0.0
Q2QM84899 Auxin response factor 25 no no 0.956 0.886 0.624 0.0
Q9FGV1811 Auxin response factor 8 O yes no 0.917 0.942 0.579 0.0
Q9ZTX8 935 Auxin response factor 6 O no no 0.573 0.511 0.851 0.0
Q0J951818 Auxin response factor 12 no no 0.500 0.509 0.823 0.0
P93024902 Auxin response factor 5 O no no 0.921 0.851 0.425 1e-162
A3B9A0 1055 Auxin response factor 16 no no 0.561 0.443 0.620 1e-158
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function desciption
 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/837 (66%), Positives = 649/837 (77%), Gaps = 33/837 (3%)

Query: 16  EKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQL 75
           E+KCLNSELWHACAGPLVSLP VGSRVVYFPQGHSEQVAASTNKE+++ IPNYPNLPPQL
Sbjct: 23  EQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQL 82

Query: 76  ICQLHNLTMHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTAS 135
           ICQLHN+TMHAD ETDEVYAQMTLQPLSPQE KD +L PAELG  +KQPTNYFCKTLTAS
Sbjct: 83  ICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFL-PAELGTASKQPTNYFCKTLTAS 141

Query: 136 DTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTT 195
           DTSTHGGFSVPRRAAEKVFPPLD++Q PPAQEL+A+DLH NEWKFRHIFRGQPKRHLLTT
Sbjct: 142 DTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTT 201

Query: 196 GWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAA 255
           GWSVFVSAKRLVAGDSVLFIWN+ NQLLLGIRRA RPQTVMPSSVLSSDSMHIGLLAAAA
Sbjct: 202 GWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAA 261

Query: 256 HAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMG 315
           HAA+TNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTR+SVGMRFRMLFETEESSVRRYMG
Sbjct: 262 HAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRISVGMRFRMLFETEESSVRRYMG 321

Query: 316 TITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLK 375
           TITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMY SPFPLRLK
Sbjct: 322 TITGISDLDPVRWMNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLK 381

Query: 376 RPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPG 435
           RPWP+GLPS +G K+ D++  S LMWL+    + G QSLNF G G++PWMQPRLD+S+ G
Sbjct: 382 RPWPTGLPSLYGGKEDDLA--SSLMWLRDS-QNTGFQSLNFGGLGMSPWMQPRLDSSLLG 438

Query: 436 LQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNA 495
           LQPD+YQ +AAAA  +    +++K  S ++LQFQQ QN+  G +S++  Q+LQQ+Q Q  
Sbjct: 439 LQPDMYQTIAAAAALQ----NTTKQVSPAMLQFQQPQNIV-GRSSLLSSQILQQAQPQFQ 493

Query: 496 LL--QSFQEN--QASAQAQLLQQQLQRQHSYNE-------------QRQQQQQVQQSQQL 538
            +  Q+   N  Q  +Q + LQQ LQ   S+NE               QQQ Q QQ QQ 
Sbjct: 494 QMYHQNINGNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQPQHQQMQQQ 553

Query: 539 HQLSVQPQISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLGNPIASSDVSSMHT 598
             LS    + N +S    L+S+ QS P TLQTV+   QQ NF D+  + ++ S+VSSMH 
Sbjct: 554 KHLSNFQTVPNALSVFSQLSSTPQSTPSTLQTVSPFSQQHNFPDTNISCLSPSNVSSMHD 613

Query: 599 ILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSN 658
            L S     AS L       P+  S    +K+V V++ + S   H I  Q+E      S+
Sbjct: 614 TLRSFPSEAASDLPGVPRITPVPVSDPWSSKRVAVESTITSR-PHDISSQIENFDLTPSS 672

Query: 659 VSELASLLPPFPGRE-YSSYHGSGDPQNNLLFGVSIDS-SLMGQNGLPNLKNISSENESL 716
           + +  S L P PGRE      GS DPQN+ LFGV+IDS SL+ Q+G+P+L N   EN S 
Sbjct: 673 IPQ-NSTLAPLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPSLHN---ENSSS 728

Query: 717 SLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSF 776
           ++PY+ SNF +    D+PL+  +TT  C+DESG++  S+N DQV  P  TFVKV+KSG+ 
Sbjct: 729 TIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFVKVYKSGTV 788

Query: 777 GRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQ 833
           GR LDI++FSSY ELRSE+ R+FGLEGQLEDP RSGWQLVFVDRE+DVLL+GDDPWQ
Sbjct: 789 GRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQ 845
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Oryza sativa subsp. japonica (taxid: 39947)
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description
>sp|A2YG67|ARFQ_ORYSI Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|Q653U3|ARFQ_ORYSJ Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|Q2QM84|ARFY_ORYSJ Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGV1|ARFH_ARATH Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description
>sp|Q0J951|ARFL_ORYSJ Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1 Back     alignment and function description
>sp|P93024|ARFE_ARATH Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3 Back     alignment and function description
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query833
118486652907 unknown [Populus trichocarpa] 0.998 0.917 0.812 0.0
356554039866 PREDICTED: auxin response factor 6-like 0.990 0.952 0.804 0.0
356501413896 PREDICTED: auxin response factor 6-like 0.990 0.920 0.801 0.0
359485334891 PREDICTED: auxin response factor 6-like 1.0 0.934 0.784 0.0
302143499836 unnamed protein product [Vitis vinifera] 0.897 0.894 0.740 0.0
225443952908 PREDICTED: auxin response factor 6-like 0.997 0.915 0.752 0.0
449466121899 PREDICTED: auxin response factor 6-like 0.987 0.915 0.716 0.0
296278602889 ARF1 [Nicotiana benthamiana] 0.975 0.914 0.725 0.0
222539816891 ARF8 [Solanum melongena] 0.979 0.915 0.728 0.0
302398563895 ARF domain class transcription factor [M 0.990 0.921 0.715 0.0
>gi|118486652|gb|ABK95163.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1374 bits (3557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/843 (81%), Positives = 750/843 (88%), Gaps = 11/843 (1%)

Query: 1   MRLAT----SGFNQQTQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAAS 56
           MRL++    +GFNQQT EG+KKCLNSELWHACAGPLVSLP VGSRVVYFPQGHSEQVAAS
Sbjct: 1   MRLSSSSSSTGFNQQTPEGDKKCLNSELWHACAGPLVSLPHVGSRVVYFPQGHSEQVAAS 60

Query: 57  TNKEVDAHIPNYPNLPPQLICQLHNLTMHADVETDEVYAQMTLQPLSPQEQKDVYLLPAE 116
           TNKEVDAHIPNYP+LPPQLICQLHN+TMHADVETDEVYAQMTLQPLS  +QKD YLLPAE
Sbjct: 61  TNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSQDDQKDAYLLPAE 120

Query: 117 LGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDN 176
           LG  +KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP LDYSQTPPAQELIARDLHDN
Sbjct: 121 LGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPTLDYSQTPPAQELIARDLHDN 180

Query: 177 EWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVM 236
           EWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRA RPQT M
Sbjct: 181 EWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTFM 240

Query: 237 PSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVG 296
           PSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPL KY+KAVYHTRVSVG
Sbjct: 241 PSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLVKYIKAVYHTRVSVG 300

Query: 297 MRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWE 356
           MRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWE
Sbjct: 301 MRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWE 360

Query: 357 IEPLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNF 416
           IEPLTTFPMY S FP+RLKRPWPSGLPSFHG++DGD++INSP+MWLQGGVGD G+QSLNF
Sbjct: 361 IEPLTTFPMYPSAFPMRLKRPWPSGLPSFHGLQDGDLNINSPMMWLQGGVGDLGVQSLNF 420

Query: 417 QGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSN 476
           Q +GV PW+QPR D S+P LQP++YQ MAAAALQEMRTV+SSKLASQS LQFQQSQNVSN
Sbjct: 421 QSFGVAPWIQPRFDTSMPALQPEMYQTMAAAALQEMRTVESSKLASQSHLQFQQSQNVSN 480

Query: 477 GTASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYN-----EQRQQQQQ 531
           G A++I RQMLQQS  Q+ALLQ+FQENQAS QAQ LQQ LQ ++ Y      + + Q QQ
Sbjct: 481 GPAALIQRQMLQQSNLQHALLQNFQENQASTQAQFLQQHLQHRNQYTGQQLQQHQPQLQQ 540

Query: 532 VQQSQQLHQLSVQPQISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLGNPIASS 591
           VQQ +QL++LS   QI NVIS LPHL S + SQ P+LQ ++SQCQQ  FS+ LGN IA+S
Sbjct: 541 VQQPKQLNELSAPQQIPNVISALPHLTSVAPSQSPSLQPISSQCQQQAFSEPLGNSIAAS 600

Query: 592 DVSSMHTILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQ 651
           DVSSMH+++GSLSQ G SHLLNSN SNP+I S A+L+K+  +D  + S  +HC LPQVEQ
Sbjct: 601 DVSSMHSVIGSLSQDGGSHLLNSNGSNPVI-SPALLSKRAAIDPQLSSGAAHCALPQVEQ 659

Query: 652 LGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSS-LMGQNGLPNLKNIS 710
           L   QS VS+LA+LL PF GREYS+Y G+ DPQNNLLFGV+IDSS  M Q+G+PNL+NI 
Sbjct: 660 LRTTQSTVSDLATLLAPFSGREYSTYQGANDPQNNLLFGVNIDSSTFMLQHGIPNLRNIG 719

Query: 711 SENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKV 770
           +EN+ LS+P+AAS FT+  G+D PLNSDMT SSCVDESGFLQSSENVDQVNP TRTFVKV
Sbjct: 720 TENDPLSMPFAASTFTSATGSDIPLNSDMTASSCVDESGFLQSSENVDQVNPSTRTFVKV 779

Query: 771 HKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDD 830
           HKSGS+GRSLDISKFSSYDELRSELAR+F LEG LEDPQRSGWQLVF DRENDVLLLGDD
Sbjct: 780 HKSGSYGRSLDISKFSSYDELRSELARLFCLEGLLEDPQRSGWQLVFGDRENDVLLLGDD 839

Query: 831 PWQ 833
           PWQ
Sbjct: 840 PWQ 842

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356554039|ref|XP_003545357.1| PREDICTED: auxin response factor 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356501413|ref|XP_003519519.1| PREDICTED: auxin response factor 6-like [Glycine max] Back     alignment and taxonomy information
>gi|359485334|ref|XP_002282830.2| PREDICTED: auxin response factor 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143499|emb|CBI22060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225443952|ref|XP_002279808.1| PREDICTED: auxin response factor 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449466121|ref|XP_004150775.1| PREDICTED: auxin response factor 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296278602|gb|ADH04265.1| ARF1 [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|222539816|gb|ACM66271.1| ARF8 [Solanum melongena] Back     alignment and taxonomy information
>gi|302398563|gb|ADL36576.1| ARF domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query833
TAIR|locus:2204237 935 ARF6 "auxin response factor 6" 0.539 0.480 0.861 1.6e-283
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.536 0.551 0.784 4.3e-228
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.527 0.404 0.610 1.1e-172
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.439 0.405 0.624 1.6e-153
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.433 0.420 0.535 8.2e-123
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.447 0.473 0.512 2.9e-118
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.429 0.538 0.532 6.1e-114
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.430 0.577 0.497 4e-110
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.465 0.644 0.479 1.1e-105
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.418 0.547 0.488 7.5e-101
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2086 (739.4 bits), Expect = 1.6e-283, Sum P(2) = 1.6e-283
 Identities = 397/461 (86%), Positives = 419/461 (90%)

Query:     1 MRLATSGFNQQTQE--GEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTN 58
             MRL+++GFN Q  E  GEK+ LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTN
Sbjct:     1 MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTN 60

Query:    59 KEVDAHIPNYPNLPPQLICQLHNLTMHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELG 118
             KEVDAHIPNYP+L PQLICQLHN+TMHADVETDEVYAQMTLQPL+ QEQKD YL PAELG
Sbjct:    61 KEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYL-PAELG 119

Query:   119 APNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEW 178
              P++QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQ PPAQEL+ARDLHDNEW
Sbjct:   120 VPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEW 179

Query:   179 KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPS 238
             KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN+KNQLLLGIRRA RPQTVMPS
Sbjct:   180 KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPS 239

Query:   239 SVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMR 298
             SVLSSDSMH+GLL        TNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMR
Sbjct:   240 SVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMR 299

Query:   299 FRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIE 358
             FRMLFETEESSVRRYMGTITGI DLDP RW NSHWRSVKVGWDESTAGERQPRVSLWEIE
Sbjct:   300 FRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIE 359

Query:   359 PLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDM--SINSPLMWLQGGVGDQGIQSLNF 416
             PLTTFPMY SPFPLRLKRPWP GLPSFHG+K+ DM  S++SPLMW      D+G+QSLNF
Sbjct:   360 PLTTFPMYPSPFPLRLKRPWPPGLPSFHGLKEDDMGMSMSSPLMW------DRGLQSLNF 413

Query:   417 QGYGVTPWMQPRLDAS-IPGLQPDVYQAMAAAALQEMRTVD 456
             QG GV PWMQPRLD S + G+Q DVYQAMAAAALQ+MR +D
Sbjct:   414 QGMGVNPWMQPRLDTSGLLGMQNDVYQAMAAAALQDMRGID 454
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009908 "flower development" evidence=IGI
GO:0005515 "protein binding" evidence=IPI
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009886 "post-embryonic morphogenesis" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
GO:0048507 "meristem development" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2YG67ARFQ_ORYSINo assigned EC number0.65250.96150.8735N/Ano
Q9FGV1ARFH_ARATHNo assigned EC number0.57950.91710.9420yesno
Q6H6V4ARFF_ORYSJNo assigned EC number0.66900.96510.8854yesno
A2X1A1ARFF_ORYSINo assigned EC number0.66900.96510.8854N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018838001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (830 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query833
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 5e-47
pfam0236297 pfam02362, B3, B3 DNA binding domain 5e-27
smart0101996 smart01019, B3, B3 DNA binding domain 5e-27
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 3e-22
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 1e-18
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 7e-04
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 0.001
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 0.001
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.002
PRK102461047 PRK10246, PRK10246, exonuclease subunit SbcC; Prov 0.003
pfam0056484 pfam00564, PB1, PB1 domain 0.004
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.004
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.004
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  161 bits (409), Expect = 5e-47
 Identities = 57/84 (67%), Positives = 71/84 (84%), Gaps = 1/84 (1%)

Query: 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRY 313
           AAHAA+T S F +FYNPRAS SEFV+P AKY+KA+ +   SVGMRF+M FETE+SS RR+
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNN-PFSVGMRFKMRFETEDSSERRF 59

Query: 314 MGTITGISDLDPVRWPNSHWRSVK 337
            GTI+G+SDLDP+RWPNS WRS++
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional Back     alignment and domain information
>gnl|CDD|215996 pfam00564, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 833
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 99.9
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.71
KOG06441113 consensus Uncharacterized conserved protein, conta 99.31
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.21
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.78
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 96.67
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 95.81
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 95.51
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 95.35
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 95.29
cd0599281 PB1 The PB1 domain is a modular domain mediating s 95.17
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 94.91
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 92.05
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 90.9
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 89.97
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 89.37
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 88.03
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=2.7e-35  Score=261.35  Aligned_cols=83  Identities=66%  Similarity=1.100  Sum_probs=81.2

Q ss_pred             HHHHHHcCCcEEEEEcCCCCCCcceechHHHHHHHhcCCCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCc
Q 003298          254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHW  333 (833)
Q Consensus       254 Aa~aaat~~~F~V~Y~PRas~sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~W  333 (833)
                      |+|||+++++|+|+||||++++|||||++||++|+. ++|++||||||.||+||+++++|+|||+||+++||+|||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~-~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALN-HPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhc-CCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCc
Confidence            689999999999999999999999999999999997 7999999999999999999999999999999999999999999


Q ss_pred             eeeE
Q 003298          334 RSVK  337 (833)
Q Consensus       334 R~Lq  337 (833)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9997

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query833
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 6e-07
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 128 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQ 187
           F K +T SD        +P+  AEK FP    + +     L   D++   W+FR+ +   
Sbjct: 14  FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 73
Query: 188 PKRHLLTTGWSVFVSAKRLVAGDSVLF 214
            + ++LT GWS FV  K L AGD V F
Sbjct: 74  SQSYVLTKGWSRFVKEKNLRAGDVVSF 100

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query833
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 1e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  153 bits (387), Expect = 1e-43
 Identities = 37/126 (29%), Positives = 57/126 (45%)

Query: 118 GAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNE 177
           G+  +     F K +T SD        +P+  AEK FP    + +     L   D++   
Sbjct: 4   GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKV 63

Query: 178 WKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMP 237
           W+FR+ +    + ++LT GWS FV  K L AGD V F  +      L I   +R  + + 
Sbjct: 64  WRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLD 123

Query: 238 SSVLSS 243
           +S  SS
Sbjct: 124 ASGPSS 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query833
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.96
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.73
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.54
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 95.34
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 93.22
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 92.35
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 92.01
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 91.81
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 81.05
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.96  E-value=3.9e-29  Score=235.40  Aligned_cols=115  Identities=29%  Similarity=0.479  Sum_probs=104.5

Q ss_pred             CCCCCCceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccch
Q 003298          119 APNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWS  198 (833)
Q Consensus       119 ~~~~~~~~lF~K~LT~SDV~~~GrfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~Dl~G~~W~FR~iyrg~pkrhlLTtGWs  198 (833)
                      ...+...++|+|+||+|||++++||+||+++|++|||.++..+..++++|.++|.+|++|+|||+||+++++|+||+||+
T Consensus         5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~   84 (130)
T 1wid_A            5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS   84 (130)
T ss_dssp             ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred             CCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChH
Confidence            34566788999999999999999999999999999999987766788999999999999999999999999999999999


Q ss_pred             hhhhccCCcCCCEEEEEEcc--CCcEEEEEEecCCCC
Q 003298          199 VFVSAKRLVAGDSVLFIWNE--KNQLLLGIRRATRPQ  233 (833)
Q Consensus       199 ~FVr~K~L~aGDsVvF~R~e--~G~L~VGIRRa~r~~  233 (833)
                      .||++|+|++||+|+|+|.+  +++|+|++||+.++.
T Consensus        85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            99999999999999999985  467999999998754
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 833
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 1e-36
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-24
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 2e-12
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  131 bits (330), Expect = 1e-36
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 122 KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFR 181
           +     F K +T SD        +P+  AEK FP    + +     L   D++   W+FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 182 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIW--NEKNQLLLGIRRATRPQTVMPS 238
           + +    + ++LT GWS FV  K L AGD V F     +  QL +G +   R  + + +
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKS--RSGSDLDA 117
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query833
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.94
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.8
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.45
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.69
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 91.25
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=5.8e-27  Score=213.08  Aligned_cols=108  Identities=31%  Similarity=0.493  Sum_probs=102.1

Q ss_pred             CceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhhc
Q 003298          124 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA  203 (833)
Q Consensus       124 ~~~lF~K~LT~SDV~~~GrfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVr~  203 (833)
                      ...+|.|+||+|||++++||+||+++|++|||+++...+.++++|.++|.+|++|+|+|+||++.++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHH
Confidence            36799999999999999999999999999999999888889999999999999999999999888899999999999999


Q ss_pred             cCCcCCCEEEEEEc--cCCcEEEEEEecCC
Q 003298          204 KRLVAGDSVLFIWN--EKNQLLLGIRRATR  231 (833)
Q Consensus       204 K~L~aGDsVvF~R~--e~G~L~VGIRRa~r  231 (833)
                      |+|++||+|+|+|+  ++++++|++||+..
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             cCCCCCCEEEEEEEeCCCCEEEEEEEECCC
Confidence            99999999999997  57899999998764
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure