Citrus Sinensis ID: 003322

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830
MLLVGGVVSHARVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
ccccccccccccEEEcccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEEEcccccccccccEEEEHHHHHHHcccccccccccEEEEEccccEEEEEEEEEccccccEEEEcccHHHHHccccccccEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccHHHHHHHccccccHHHHHHHHccccccHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccc
ccEEccEEEEEEEcccEEEEHHHHEEEcccccEEHHHccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHEEccHccccccccEEEcHHHHHHHccccccccccEEEEEcccccEEEEEEEEcccccccEEEEccccHHHHHcccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHccHHHHHHHcccccccccEEEEEEccEEEEcccccEEcccEEEEEcccccccEEEEccccHHcccccccEccccccccccccccccccccccHHHccHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccEccccccccc
MLLVGGVVSHARVHCgcitsvhaftlldaggiecmtcarknvlvaptpswppslfyqtpfperikdlsvknwtqlagsgpvpwrqapslfnssipqpelrprlpyevdlsagidrinaserlsvpslekrKLEDFSERLMngglksgsrdipenanagsncdmqpssclnkpqqsstlkddsstphfglavsyaspsetnsqigvsgshlrpvvqpplvkqfhgnlpngadslgetqvrngrprvdargrsqllprywprftdqdlqqisgdsnsvITPLFEKMLsasdagrigrlvlpkkcaeayfppisqpeglplkvqdskgKEWIFQFrfwpnnnsrmyvLEGVTPCiqnmqlqagdivtfsrlepegklvmgfrkassasasdqdneankagtgipanghaeladpsswskvdksgyiaTEALgakssisrkrknttlgskskrlkieNEDVIELKLTWEEaqgllrpppnnvpsvvviegyefeeyedapilgkptifatdnvgekiqwvqcedcskwrkvpanarlpskwtcsgnlwdpersVCSVAQELREEQLEdliapnnpasskklkaakqepDCVEALEGLDTLANLAIlgegegltassqattkhprhrpgcscivciqppsgkgpkhkqtctcnvcltvKRRFHTLMLRREKKQSEKDAETSRKKQqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQrlsssgvntssvdneglqggvtgekisngitldgshqdtdedhhgslsvkasaSISATG
MLLVGGVVSHARVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFnssipqpelrPRLPYEVDLSAGIdrinaserlsvpslekrkledFSERLmngglksgsrdiPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPngadslgetqvrngrprvdargrsqllprywPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAyfppisqpeglPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAssasasdqdneaNKAGTGIPANGHAELADPSSWSKVDKSGYIATealgakssisrkrknttlgskskrlkienedvIELKLTWeeaqgllrpppnnvpsVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWrkvpanarlpskwtcsgnlwdpeRSVCSVAQELREEQLedliapnnpasskklKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPpsgkgpkhkqtctcnvcltvkRRFHTLMLrrekkqsekdaetsrkkqqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQRlsssgvntssvdneglqggvTGEKISNGITLDGSHQdtdedhhgslsvkasasisatg
MLLVGGVVSHARVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRpppnnvpsvvvIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
**LVGGVVSHARVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWR************************************************************************************************************************************************************************LLPRYWPRFTDQDLQQI****NSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLV*******************************************************************************EDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSV********************************CVEALEGLDTLANLAILGE*******************GCSCIVCIQ*********KQTCTCNVCLTVKRRFHTLML************************************************************************************************************************************************************************
*LLVGG*VSHARVHCGCITSVHAFTLLDAGGIECMTCARKNVL*******************************************************************************************************************************************************************************************************************************************PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVM***********************IPANGHAELADPSSWSKVDKSGY*****************************IENEDVIELKLTW**************************************IFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDP**********************************************************************************************************************************************************************************************************************QDAT******************************************************************
MLLVGGVVSHARVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCD*********************TPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGF*****************AGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPA***********PDCVEALEGLDTLANLAILGEGEGL**************PGCSCIVCIQPP*********TCTCNVCLTVKRRFHTLMLR*******************************************************************FKGQIDLNIQPE***********GSMIRLLQDATEKYLRQ*************DNEGLQGGVTGEKISNGITLDGS************************
MLLVGGVVSHARVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPE*IK*LSVKNWTQL*GSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANA***********************************************************************************************LLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS****************************************************************SKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLK************EGLDTLANLAILGE*****************RPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQ*****************************************************************QI***IQPERE******SDSGSMIRLLQDATEKYLRQQRL*********************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLVGGVVSHARVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRxxxxxxxxxxxxxxxxxxxxxLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query830 2.2.26 [Sep-21-2011]
Q0D5G4955 B3 domain-containing prot yes no 0.878 0.763 0.5 0.0
Q5CCK4780 B3 domain-containing tran yes no 0.631 0.671 0.464 1e-141
Q6Z3U3949 B3 domain-containing prot no no 0.621 0.543 0.479 1e-135
Q8W4L5790 B3 domain-containing tran no no 0.773 0.812 0.417 1e-133
O65420713 B3 domain-containing tran no no 0.550 0.640 0.426 3e-93
Q7XKC4438 Putative B3 domain-contai no no 0.128 0.244 0.444 1e-18
Q9LW31313 B3 domain-containing tran no no 0.134 0.357 0.407 4e-18
Q7XKC5433 B3 domain-containing prot no no 0.122 0.235 0.456 5e-18
Q6Z1Z3362 B3 domain-containing prot no no 0.122 0.281 0.407 1e-15
A4LBC0402 B3 domain-containing prot no no 0.130 0.268 0.381 1e-15
>sp|Q0D5G4|Y7633_ORYSJ B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2 Back     alignment and function desciption
 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/826 (50%), Positives = 520/826 (62%), Gaps = 97/826 (11%)

Query: 12  RVHCGCITSVHAFTLLDAGGIECMTCARK-NVLVAPTPSWPPSLFYQTPFPERIKDLSVK 70
           R+HCGCI SVHAF  LDAGG+EC+ CARK +  +AP+  W  S+       +R KD  VK
Sbjct: 144 RLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMAPSQIWSSSMHMAQNVADR-KDNFVK 202

Query: 71  NWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKR 130
           +W   AG     WRQ  ++++ S  Q +L+ RL +E D  +G +++    R  + + EK 
Sbjct: 203 SWRPPAGQFSSQWRQN-NMWSMSTMQSDLQQRLAFEFDRPSGSEKL-LPGRTFIHAHEK- 259

Query: 131 KLEDFS--------------ERLMNGGLKSGSRDIPENA------------------NAG 158
           K +D                ER  NG  +  + D P  A                  +AG
Sbjct: 260 KFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLD-PTYAYTLYHREGTNPNLHDHSHHAG 318

Query: 159 SN-------------CDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGV 205
            N             C    ++        S LKDD S    GL+ +++S +     I +
Sbjct: 319 ENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDPSAVPAGLSSNFSSANGPKDHIRI 378

Query: 206 SGSHLRP-VVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQ 264
             +  +  +    L KQF+ +  +  D+  + Q+RNGRPR+DA+ RSQLLPRYWPR TDQ
Sbjct: 379 GPTQQQQQMASSSLQKQFYSH--SVIDNDFQAQLRNGRPRMDAKARSQLLPRYWPRITDQ 436

Query: 265 DLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSK 324
           +LQ +SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP ISQ EGLPLKVQD+ 
Sbjct: 437 ELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQDAT 496

Query: 325 GKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSA 384
           GKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSR++PEGKLVMGFRKA++ 
Sbjct: 497 GKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKATNL 556

Query: 385 SASDQDNEANKAGTGIP---ANGHAELADPS------------------------SWSKV 417
           SA +QD     A   +P   AN    + D S                        +  K+
Sbjct: 557 SA-EQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVPRPIKVNTESKSSSPVEQATACKI 615

Query: 418 DKSGYIATEALGAKSS--ISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPP 475
           DK      E  G  SS  +  KRK T++G K KR  +++E+ +ELK+TWEEAQ LLRPPP
Sbjct: 616 DKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLRPPP 675

Query: 476 NNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPS 535
              PS+VV++G+EFEEYE+ PILG+ T F TD  GE  QW QCEDCSKWRK+P +A LPS
Sbjct: 676 -KAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPS 734

Query: 536 KWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDT 595
           KWTCS N WD ERS C  AQE+  E+L ++I P  P ++KK K  K + D ++  +GLDT
Sbjct: 735 KWTCSDNKWDSERSSCDSAQEINMEELGEMI-PIKPGAAKKTK-GKVDTDNIDVSDGLDT 792

Query: 596 LANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKR 655
           LANLAILGEGE L   SQ TT+HPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVC+TV+R
Sbjct: 793 LANLAILGEGESL--PSQPTTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRR 850

Query: 656 RFHTLMLRREKK-QSEKDAETSRKKQQ-QQKLPVPEKSADDDPLSCSKTGNNSPNEKKVV 713
           RF TLM+RREK+ QSEKD+   RK++  Q   PVP+  +   P S S     SP+++   
Sbjct: 851 RFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQSGSGAHPTSTS-----SPHQRADT 905

Query: 714 S-EGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIR 758
           + EG +D S   K ++SP K QIDLN QPERE+E SP SD+  ++R
Sbjct: 906 NGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQSPKSDATRLLR 951

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q5CCK4|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z3U3|Y7797_ORYSJ B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4L5|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1 Back     alignment and function description
>sp|O65420|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=4 SV=3 Back     alignment and function description
>sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2 Back     alignment and function description
>sp|Q9LW31|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2 Back     alignment and function description
>sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z1Z3|IDEF1_ORYSJ B3 domain-containing protein IDEF1 OS=Oryza sativa subsp. japonica GN=IDEF1 PE=2 SV=1 Back     alignment and function description
>sp|A4LBC0|LFL1_ORYSJ B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica GN=LFL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query830
224076806918 predicted protein [Populus trichocarpa] 0.962 0.870 0.699 0.0
449433878896 PREDICTED: B3 domain-containing protein 0.979 0.907 0.693 0.0
449479362899 PREDICTED: LOW QUALITY PROTEIN: B3 domai 0.983 0.907 0.690 0.0
255560846854 transcription factor, putative [Ricinus 0.939 0.913 0.709 0.0
357446313888 B3 domain-containing transcription repre 0.961 0.898 0.683 0.0
356549413855 PREDICTED: B3 domain-containing protein 0.936 0.908 0.662 0.0
356549411889 PREDICTED: B3 domain-containing protein 0.966 0.902 0.661 0.0
356555034854 PREDICTED: B3 domain-containing protein 0.931 0.905 0.662 0.0
224116220842 predicted protein [Populus trichocarpa] 0.784 0.773 0.711 0.0
302144200601 unnamed protein product [Vitis vinifera] 0.630 0.870 0.726 0.0
>gi|224076806|ref|XP_002305001.1| predicted protein [Populus trichocarpa] gi|222847965|gb|EEE85512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/845 (69%), Positives = 663/845 (78%), Gaps = 46/845 (5%)

Query: 13  VHCGCITSVHAFTLLDAGGIECMTCARKNVL---------------VAPTPSWPPSLFYQ 57
           VHCGCI S+  FTLLDAGGI CM C RK+ +               V   P+W P LFY 
Sbjct: 93  VHCGCIVSIQTFTLLDAGGIACMACERKSFVLESNPQILLTATSADVTSNPAWSP-LFYH 151

Query: 58  TPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRIN 117
            PFPER+KDLSVK+W+QLAGSGPVPWRQAPSLFN S  Q EL+ R+PYEVD      R+N
Sbjct: 152 APFPERLKDLSVKSWSQLAGSGPVPWRQAPSLFNPSAAQSELQTRMPYEVD------RLN 205

Query: 118 ASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSST 177
             ER S PSLEKRK+EDFSE+ +NG L+   +DI EN NAG   + QP       Q SS+
Sbjct: 206 TGERFSAPSLEKRKVEDFSEKFINGNLRIRLQDIVENGNAGIIGEEQP-------QPSSS 258

Query: 178 LKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQ 237
           L +D+S   FG+ + Y S SE+NSQI  S + L+P   PP  K FHG+L NG DS  +  
Sbjct: 259 LMEDASGQQFGITIPYKSISESNSQIEGSVNALQPAPPPPFTKHFHGSLHNGVDSSVDGH 318

Query: 238 VRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLV 297
           +RNG+PR DARGRSQLLPRYWPRFTD +LQQISG+SNSVI PLFEKMLSASDAGRIGRLV
Sbjct: 319 IRNGKPRTDARGRSQLLPRYWPRFTDGELQQISGNSNSVIKPLFEKMLSASDAGRIGRLV 378

Query: 298 LPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 357
           LPKKCAEAYFPPISQPEGLPL+VQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL
Sbjct: 379 LPKKCAEAYFPPISQPEGLPLRVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 438

Query: 358 QAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKV 417
           QAGDIVTFSRLEPEGKLVMGFRKA+SA  SDQDNE ++ G G+   G AEL DPS WSKV
Sbjct: 439 QAGDIVTFSRLEPEGKLVMGFRKATSAPPSDQDNETSQTGNGVSTKGDAEL-DPSPWSKV 497

Query: 418 DKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNN 477
           DKSGYIA E L  KSSI RKRK++TLGSKSKRL+IENED+IELKLTWEEAQGLLRPPP++
Sbjct: 498 DKSGYIAKEVLEGKSSI-RKRKSSTLGSKSKRLRIENEDMIELKLTWEEAQGLLRPPPDH 556

Query: 478 VPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKW 537
           VPS+V IEG+EFEEYEDAP+LGKPTIFATDNVG+KIQWVQCEDC KWRK+PANA LPSKW
Sbjct: 557 VPSIVAIEGFEFEEYEDAPVLGKPTIFATDNVGQKIQWVQCEDCLKWRKLPANALLPSKW 616

Query: 538 TCSGNLWDPERSVCSVAQELREEQLEDLI-APNNPASSKKLKAAKQEPDCVEALEGLDTL 596
            CS N WDPERS CSVAQEL  EQLEDL+ + N   +SK+ K AK++ D VEALEGLDTL
Sbjct: 617 ACSSNTWDPERSSCSVAQELTAEQLEDLLPSCNLVVTSKRSKDAKKDIDRVEALEGLDTL 676

Query: 597 ANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRR 656
           ANLAILGEGE   ASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVC TVKRR
Sbjct: 677 ANLAILGEGEAFPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCQTVKRR 736

Query: 657 FHTLMLRREK---------KQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTG--NN 705
           F TLM++REK         KQSEK+AET+RK+QQ+   P  EK  DD+P   S TG  + 
Sbjct: 737 FKTLMMKREKKQSEKEAETKQSEKEAETTRKRQQE---PSAEKLLDDEPSPSSNTGSESG 793

Query: 706 SPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATE 765
           SPN+KK VSEGSDDD SR+KSSTSPFKGQIDLNIQPERE+ELSPGSDSG M+R+LQDATE
Sbjct: 794 SPNKKKTVSEGSDDDPSRMKSSTSPFKGQIDLNIQPEREDELSPGSDSGGMMRMLQDATE 853

Query: 766 KYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASAS 825
            YLR QR  SS  + +   N  L  G T EK+S+ I L  SHQD D+DH  + S+ ASAS
Sbjct: 854 TYLRMQRFLSSDGDNNPSGNHMLSSGGTREKVSDVIMLGSSHQDADKDHPSAFSMNASAS 913

Query: 826 ISATG 830
             ATG
Sbjct: 914 TPATG 918

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449433878|ref|XP_004134723.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479362|ref|XP_004155579.1| PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os07g0563300-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255560846|ref|XP_002521436.1| transcription factor, putative [Ricinus communis] gi|223539335|gb|EEF40926.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357446313|ref|XP_003593434.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] gi|355482482|gb|AES63685.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356549413|ref|XP_003543088.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356549411|ref|XP_003543087.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356555034|ref|XP_003545844.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Glycine max] Back     alignment and taxonomy information
>gi|224116220|ref|XP_002317242.1| predicted protein [Populus trichocarpa] gi|222860307|gb|EEE97854.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302144200|emb|CBI23327.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query830
TAIR|locus:2116592780 HSL1 "HSI2-like 1" [Arabidopsi 0.592 0.630 0.502 3.9e-142
TAIR|locus:2064417790 HSI2 "high-level expression of 0.737 0.774 0.429 2.4e-134
TAIR|locus:2088439313 FUS3 "FUSCA 3" [Arabidopsis th 0.133 0.354 0.412 1.2e-16
TAIR|locus:2039165244 ABS2 "ABNORMAL SHOOT 2" [Arabi 0.148 0.504 0.382 2.9e-15
UNIPROTKB|Q6Z1Z3362 IDEF1 "B3 domain-containing pr 0.227 0.522 0.326 3.5e-15
UNIPROTKB|Q7XKC5433 LOC_Os04g58000 "B3 domain-cont 0.122 0.235 0.456 4.5e-15
UNIPROTKB|A4LBC0402 LFL1 "B3 domain-containing pro 0.260 0.537 0.293 2.7e-14
TAIR|locus:2093166720 ABI3 "AT3G24650" [Arabidopsis 0.186 0.215 0.331 2.3e-13
TAIR|locus:2032170363 LEC2 "LEAFY COTYLEDON 2" [Arab 0.216 0.495 0.308 2.5e-13
TAIR|locus:2164215282 DPA4 "DEVELOPMENT-RELATED PcG 0.203 0.599 0.293 1.6e-12
TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1260 (448.6 bits), Expect = 3.9e-142, Sum P(3) = 3.9e-142
 Identities = 259/515 (50%), Positives = 341/515 (66%)

Query:   197 SETNS--QIGVSGSHL--RPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQ 252
             S+TNS  Q+      L  +P    P+     G  P+G  SL  +Q+   RP  + RG++Q
Sbjct:   200 SKTNSIFQLAPRSRQLLPKPANSAPIAA---GMEPSG--SL-VSQIHVARPPPEGRGKTQ 253

Query:   253 LLPRYWPRFTDQDLQQISGD----SNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP 308
             LLPRYWPR TDQ+L Q+SG     SNS I PLFEK+LSASDAGRIGRLVLPK CAEAYFP
Sbjct:   254 LLPRYWPRITDQELLQLSGQYPHLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYFP 313

Query:   309 PISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL 368
             PIS PEGLPLK+QD KGKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSR 
Sbjct:   314 PISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRT 373

Query:   369 EPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEAL 428
             EPEGKLVMG+RKA++++A+     +++    + +N         +WSK++KS  +A + L
Sbjct:   374 EPEGKLVMGYRKATNSTATQMFKGSSEPNLNMFSNSLNPGCGDINWSKLEKSEDMAKDNL 433

Query:   429 GAKSSISRKRKNT-TLGSKSKRLKIENEDVIELKLTWEEAQGLLRXXXXXXXXXXXIEGY 487
               +SS++  RK    +G+KSKRL I++ DV+ELK+TWEEAQ LLR           +E  
Sbjct:   434 FLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQELLRPPQSTKPSIFTLENQ 493

Query:   488 EFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPE 547
             +FEEY++ P+ GK T+F +   GE+ QWVQC+ C KWR++P +  LP KW+CS NL DP 
Sbjct:   494 DFEEYDEPPVFGKRTLFVSRQTGEQEQWVQCDACGKWRQLPVDILLPPKWSCSDNLLDPG 553

Query:   548 RSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEG 607
             RS CS   EL   + + L+  +     ++L ++ ++ +  +    L++L N  I   GE 
Sbjct:   554 RSSCSAPDELSPREQDTLVRQSKEFKRRRLASSNEKLNQSQDASALNSLGNAGITTTGEQ 613

Query:   608 LTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKK 667
                +  ATTKHPRHR GCSCIVC QPPSGKG KHK +CTC VC  VKRRF TLMLR+  K
Sbjct:   614 GEITVAATTKHPRHRAGCSCIVCSQPPSGKG-KHKPSCTCTVCEAVKRRFRTLMLRKRNK 672

Query:   668 ----QSEKDAETS---RKKQQQQKLPVPEKSADDD 695
                 Q+ + A++    R + + + +P  E +A ++
Sbjct:   673 GEAGQASQQAQSQSECRDETEVESIPAVELAAGEN 707
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0010030 "positive regulation of seed germination" evidence=IGI
GO:2000034 "regulation of seed maturation" evidence=IGI
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164215 DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00040219
hypothetical protein (918 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query830
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 4e-22
pfam0236297 pfam02362, B3, B3 DNA binding domain 7e-20
smart0101996 smart01019, B3, B3 DNA binding domain 3e-17
pfam0749650 pfam07496, zf-CW, CW-type Zinc Finger 2e-12
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 3e-08
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information 
 Score = 91.2 bits (227), Expect = 4e-22
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 279 PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNN 338
           PLF K+L+ SD   +GRLVLPKK A+A+ PP    EG+ + ++D  GK+W  + +   N+
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPP---KEGVEVTLEDPDGKKWTVKLKKRKNS 57

Query: 339 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 380
             RM +  G    ++   L+ GD + F       K  +   +
Sbjct: 58  G-RMVLSGGWKEFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 830
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.64
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.57
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 97.77
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.76
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information 
Probab=99.64  E-value=1.1e-15  Score=133.67  Aligned_cols=98  Identities=24%  Similarity=0.437  Sum_probs=70.0

Q ss_pred             EEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCccccc-cCchhhhhccCCCC
Q 003322          281 FEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQA  359 (830)
Q Consensus       281 F~KvLTaSDVgslGRLVIPKk~AEs~FPpLd~~eG~~L~v~D~~GK~W~FRfsyw~NN~SR~YVL-eGWs~FVRsK~Lqa  359 (830)
                      |.|+|+++|+....+|+||++.++.|.  +....++.|.++|..|+.|.+++.++. +..+ |+| .||..||++++|++
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~--~~~~~~~~v~l~~~~g~~W~v~~~~~~-~~~~-~~l~~GW~~Fv~~n~L~~   76 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHG--GNKRKSREVTLKDPDGRSWPVKLKYRK-NSGR-YYLTGGWKKFVRDNGLKE   76 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS----SS--CEEEEEETTTEEEEEEEEEEC-CTTE-EEEETTHHHHHHHCT--T
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhC--CCcCCCeEEEEEeCCCCEEEEEEEEEc-cCCe-EEECCCHHHHHHHcCCCC
Confidence            899999999998889999999999982  112357899999999999999999883 3334 555 69999999999999


Q ss_pred             CCEEEEEEec-CCCeEEEEEEeCC
Q 003322          360 GDIVTFSRLE-PEGKLVMGFRKAS  382 (830)
Q Consensus       360 GDtVvF~R~e-p~GkL~IGVRRa~  382 (830)
                      ||.|+|+... ...++.|.|.|++
T Consensus        77 GD~~~F~~~~~~~~~~~v~i~~~~  100 (100)
T PF02362_consen   77 GDVCVFELIGNSNFTLKVHIFRKS  100 (100)
T ss_dssp             T-EEEEEE-SSSCE-EEEEEE---
T ss_pred             CCEEEEEEecCCCceEEEEEEECc
Confidence            9999999975 3446799998863

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query830
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 8e-14
2l7p_A100 Ashh2 A Cw Domain Length = 100 1e-04
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 73/116 (62%), Gaps = 10/116 (8%)
Query: 280 LFEKMLSASDAGRIGRLVLPKKCAEAYFP-PISQ--PEGLPLKVQDSKGKEWIFQFRFWP 336
           LFEK ++ SD G++ RLV+PK  AE +FP P S    +G+ L  +D  GK W F++ +W 
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW- 71
Query: 337 NNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLEPEG-KLVMGFRKASSASASDQD 390
            N+S+ YVL +G +  ++   L+AGD+V+FSR   +  +L +G++   S S SD D
Sbjct: 72  -NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK---SRSGSDLD 123
>pdb|2L7P|A Chain A, Ashh2 A Cw Domain Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query830
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 2e-27
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 1e-15
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  106 bits (266), Expect = 2e-27
 Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 270 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPIS---QPEGLPLKVQDSKGK 326
           SG S      LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK
Sbjct: 3   SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGK 62

Query: 327 EWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSA 384
            W F++ +W  N+S+ YVL +G +  ++   L+AGD+V+FSR    + +L +G++  S +
Sbjct: 63  VWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120

Query: 385 SAS 387
              
Sbjct: 121 DLD 123
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query830
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.94
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 99.72
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 99.65
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.56
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.38
4gut_A 776 Lysine-specific histone demethylase 1B; histone de 92.78
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 91.23
1we9_A64 PHD finger family protein; structural genomics, PH 83.75
1wee_A72 PHD finger family protein; structural genomics, PH 83.75
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.94  E-value=5e-27  Score=218.51  Aligned_cols=120  Identities=38%  Similarity=0.717  Sum_probs=100.7

Q ss_pred             cCCCCCcccccEEEecccccCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcccccc
Q 003322          270 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE  346 (830)
Q Consensus       270 s~~~ns~~~~LF~KvLTaSDVgslGRLVIPKk~AEs~FPpLd~---~eG~~L~v~D~~GK~W~FRfsyw~NN~SR~YVLe  346 (830)
                      ++..+....++|+|+||+|||++++||+||+++|+.|||.++.   .+++.|.++|.+|++|+|+|+||  +.+++|+|+
T Consensus         3 ~~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt   80 (130)
T 1wid_A            3 SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLT   80 (130)
T ss_dssp             -----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEE
T ss_pred             CCCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEc
Confidence            3556667789999999999999889999999999999999974   57899999999999999999999  556788885


Q ss_pred             -CchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCcCcchhhh
Q 003322          347 -GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE  392 (830)
Q Consensus       347 -GWs~FVRsK~LqaGDtVvF~R~e-p~GkL~IGVRRa~~~~~s~q~~~  392 (830)
                       ||..||++|+|++||+|+|++.+ .+++|+|++||+..+. ++|++.
T Consensus        81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~  127 (130)
T 1wid_A           81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP  127 (130)
T ss_dssp             SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred             CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence             99999999999999999999986 3469999999998655 455443
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Back     alignment and structure
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 830
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 9e-30
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-22
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 1e-12
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  111 bits (280), Expect = 9e-30
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 278 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRF 334
             LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK W F++ +
Sbjct: 4   EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY 63

Query: 335 WPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPE-GKLVMGFRKASSAS 385
           W ++ S +   +G +  ++   L+AGD+V+FSR   +  +L +G++  S + 
Sbjct: 64  WNSSQSYVL-TKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 114
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query830
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.91
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.6
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.34
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=5.6e-25  Score=197.22  Aligned_cols=108  Identities=34%  Similarity=0.691  Sum_probs=94.0

Q ss_pred             ccccEEEecccccCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCccccccCchhhhh
Q 003322          277 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQ  353 (830)
Q Consensus       277 ~~~LF~KvLTaSDVgslGRLVIPKk~AEs~FPpLd~---~eG~~L~v~D~~GK~W~FRfsyw~NN~SR~YVLeGWs~FVR  353 (830)
                      ..++|+|+||+|||++.+||+||+++|++|||+++.   .+++.|.+.|.+|++|.|+|+||. +..+.++..||..||+
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~-~~~~~~l~~GW~~Fv~   81 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN-SSQSYVLTKGWSRFVK   81 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEET-TTTEEEEESSHHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEEC-CCCceEEecCHHHHHH
Confidence            468999999999999889999999999999999875   468999999999999999999993 2333344469999999


Q ss_pred             ccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCc
Q 003322          354 NMQLQAGDIVTFSRLE-PEGKLVMGFRKASSAS  385 (830)
Q Consensus       354 sK~LqaGDtVvF~R~e-p~GkL~IGVRRa~~~~  385 (830)
                      +++|++||+|+||+.+ .+|+|+|++||+....
T Consensus        82 ~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~~  114 (117)
T d1wida_          82 EKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  114 (117)
T ss_dssp             HTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HcCCCCCCEEEEEEEeCCCCEEEEEEEECCCCC
Confidence            9999999999999986 4579999999987543
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure