Citrus Sinensis ID: 003345

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------83
MDNNVKSGGVGGEEGFDFMQHGPSMEDPPSVLIGQFLHKQKASGEISLDMDLEMDELQHQASNKNNNCGSSSGININSNTKSTQGLPTVSESPTAVNRVSFESLKRRHSNSTNNNYKDSPQKDSEGEVVKCTSNKSFDRNVSFNKKSALLMTKTKSRLMDLPPERIEPKSGRVVGRSGQLKSGFIGKNVDEEEEDPLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQERIVSEVQKLQNAGVTIPPGLKSSVLSSPQSAKVIGSGRLQRTPREGKSPKLSHTFSNKDDDGITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDSTNEDESAPHIKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPGPPMASDRLS
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccEEEEccEEEEEEEEEEEEEEEEEccccEEEEEccccccccEEEEEcccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccc
cccccccccccccccccHccccccccccccHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHccHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHccEEEEcccccccEcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccEEEEcccEEEEEEEEEEEEEEEcccccEEEEccHHHccccEHcccccccHcccEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccEEEcccccccccccccc
mdnnvksggvggeegfdfmqhgpsmedppsvlIGQFlhkqkasgeisldMDLEMDELQHQasnknnncgsssgininsntkstqglptvsesptavnrvSFESLKrrhsnstnnnykdspqkdsegevvkctsnksfdrnvsfnKKSALLMTKTKsrlmdlpperiepksgrvvgrsgqlksgfigknvdeeeedplleedlpeeykkEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIetlsgpplieiQKAEEEQERIVSEVQKLqnagvtippglkssvlsspqsakvigsgrlqrtpregkspklshtfsnkdddgitidhlhklnpknvsAWNMKRLMNIIrhgslttldeqiqdstnedesaphiKTEYEAKAAARKIFQNvakpgskfiYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVmhpfdvgdrceiDGVQMVVEEMNILSTVFLrydnqkiifpnsVLATKAIgnyyrspdmgdaVEFCIHISTPAEKIAQMKQRILSFIEnkkdhwctnpmfIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIqyrlwpidinvrampgppmasdrls
mdnnvksggvggEEGFDFMQHGPSMEDPPSVLIGQFLHKQKASGEISLDMDLEMDELQHQASNKNNNCGSSSGININSNTKSTqglptvsesptaVNRVSfeslkrrhsnstnnnykdspqkdsegevVKCTsnksfdrnvsfnkksallmtktksrlmdlpperiepksgrvvgrsgqlksgfigknvdeeeedplleedlpeeyKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQERIVSEVQKLQnagvtippglkssvlsspqsakvigsgrlqrtpregkspklshtfsnkdddgitIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQdstnedesaphIKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASerkkisksalknwvvNVFRERRALAftlndtktavnKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMFIFKDVEELNRVRFAIWLShkmnhqdigeRWERRALLVEEMTKIFRELDIQYRLWPIdinvrampgppmasdrls
MDNNVKSGGVGGEEGFDFMQHGPSMEDPPSVLIGQFLHKQKASGEISLDMDLEMDELQHQAsnknnncgsssgininsntkstQGLPTVSESPTAVNRVSFESLKRRHSNSTNNNYKDSPQKDSEGEVVKCTSNKSFDRNVSFNKKSALLMTKTKSRLMDLPPERIEPKSGRVVGRSGQLKSGFIGKNVdeeeedplleedlpeeYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFkkkklwklglwkwellilvlICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGvmlwlvktllvkvlASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQERIVSEVQKLQNAGVTIPPGLKSSVLSSPQSAKVIGSGRLQRTPREGKSPKLSHTFSNKDDDGITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDSTNEDESAPHIKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNvligiitviiwllilgiATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPGPPMASDRLS
****************************************************************************************************************************************************************************************************************EKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEI**********************************************************************ITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTT**************************AARKIFQNVAKPGSKFIYLEDLMRFLN***********************ALKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVR*************
***************************************************************************************************************************************************************************************************PLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIE*********************************************************************************************MNIIRHGSLTTL**Q*****************YEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDIN***************
********GVGGEEGFDFMQHGPSMEDPPSVLIGQFLHKQKASGEISLDMDLEMDELQHQASNKNNNCGSSSGININSNTKSTQGLPTVSESPTAVNRVSFESL************************VKCTSNKSFDRNVSFNKKSALLMTKTKSRLMDLPPERIEPKSGRVVGRSGQLKSGFIGKNVDEEEEDPLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQERIVSEVQKLQNAGVTIPPGLKS******************************HTFSNKDDDGITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQI**********PHIKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMS************KSALKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPGP********
*************************EDPPSVLIGQFLHKQKASGEISLDMDL***E*********************************************************************GEVV******************************************************************PLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQERIVSEVQKLQNAGVTIPPGLKSSVL************************************GITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDSTNEDESAPHIKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAM***********
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MDNNVKSGGVGGEEGFDFMQHGPSMEDPPSVLIGQFLHKQKASGEISLDMDLEMDELQHQASNKNNNCGSSSGININSNTKSTQGLPTVSESPTAVNRVSFESLKRRHSNSTNNNYKDSPQKDSEGEVVKCTSNKSFDRNVSFNKKSALLMTKTKSRLMDLPPERIEPKSGRVVGRSGQLKSGFIGKNVDEEEEDPLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIExxxxxxxxxxxxxxxxxxxxxGVTIPPGLKSSVLSSPQSAKVIGSGRLQRTPREGKSPKLSHTFSNKDDDGITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDSTNEDESAPHIKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPGPPMASDRLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query828 2.2.26 [Sep-21-2011]
Q9SYM1856 Mechanosensitive ion chan yes no 0.917 0.887 0.621 0.0
Q9LH74881 Mechanosensitive ion chan no no 0.933 0.877 0.597 0.0
Q9LPG3881 Mechanosensitive ion chan no no 0.967 0.909 0.571 0.0
F4IME2908 Mechanosensitive ion chan no no 0.933 0.851 0.575 0.0
F4IME1849 Mechanosensitive ion chan no no 0.884 0.862 0.551 0.0
Q9LYG9734 Mechanosensitive ion chan no no 0.789 0.891 0.397 1e-145
Q84M97742 Mechanosensitive ion chan no no 0.682 0.761 0.398 1e-130
O74839 1011 Uncharacterized MscS fami yes no 0.408 0.334 0.245 5e-25
O14050 840 Uncharacterized MscS fami no no 0.374 0.369 0.242 8e-21
O28726283 Uncharacterized MscS fami yes no 0.100 0.293 0.372 2e-05
>sp|Q9SYM1|MSL6_ARATH Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1 Back     alignment and function desciption
 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/845 (62%), Positives = 629/845 (74%), Gaps = 85/845 (10%)

Query: 6   KSGGVGGE----EGFDFMQHGPSMEDPPSVLIGQFLHKQKASGEISLDMDLEMDELQHQA 61
           +S    GE    EGF+F +     EDPP+ LIGQFLHKQ+ASGEI LDMDL MDELQ   
Sbjct: 62  RSAATTGEQQKDEGFEFRRG----EDPPTKLIGQFLHKQQASGEICLDMDLGMDELQ--- 114

Query: 62  SNKNNNCGSSSGININSNTKSTQGLPTVSESPTAVNRVSF--ESLKRRHSNSTNNNYKDS 119
                                ++GL  VSESP    RVS   + + RR S S  NN  D 
Sbjct: 115 ---------------------SRGLTPVSESP----RVSTKRDPVGRRDSRSNTNNNDD- 148

Query: 120 PQKDSEGEVVKCTSNKSFDRNVSFNKKSALLMTKTKSRLMDLPPER-----IEPKSGRVV 174
                 GEVVKC+ N +  +  S    S LL  +T+SRL D P  +      + KSGR+ 
Sbjct: 149 ------GEVVKCSGNNAPIQRSS----STLLKMRTRSRLSDPPTPQLPPQTADMKSGRI- 197

Query: 175 GRSGQLKSGFIGKNV----DEEEEDPLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALV 230
            +SGQ+KSGF GK+     +EEE+DP   EDLPEEY+K+K+S+W++LEW SLILII   V
Sbjct: 198 PKSGQMKSGFFGKSPKTQGEEEEDDPFAAEDLPEEYRKDKLSLWIVLEWLSLILIIAGFV 257

Query: 231 CSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFV 290
           C+L I   +KKKLW+L LWKWE ++LVLICGRLVSSWIV+I+VF IERNFLLRKRVLYFV
Sbjct: 258 CTLAIPSLRKKKLWELQLWKWESMVLVLICGRLVSSWIVKIVVFFIERNFLLRKRVLYFV 317

Query: 291 YGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLL 350
           YGVRKAVQNCLWLGLVL+AWH LFD++V +  N+  L+  TKI +CL VG +LWLVKTLL
Sbjct: 318 YGVRKAVQNCLWLGLVLLAWHFLFDEKVAKAANTKALRVVTKIFVCLLVGFLLWLVKTLL 377

Query: 351 VKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQERIVSEVQKLQN-AG 409
           VKVLASSFH+STYFDRIQE+LF QY+IETLSGPPLIEIQK EEE+ERI  EV+K QN  G
Sbjct: 378 VKVLASSFHMSTYFDRIQESLFTQYVIETLSGPPLIEIQKNEEEEERISVEVKKFQNPGG 437

Query: 410 VTIPPGLKSSVLSSPQSAKVIGSGRLQRTPREGKSPKLSHTFSNK-----DDDGITIDHL 464
           V I  G + S +                  + GKSP LSH  SN      ++ GITID L
Sbjct: 438 VEIQSGAQKSPM------------------KTGKSPFLSHVLSNGGGGGGENKGITIDSL 479

Query: 465 HKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDSTNEDESAPHIKTEYEAKAAARKIFQ 524
           HKLNPKNVSAW MKRLMNIIR+GSLTTLDEQ+QD + +D+    I++E+EAK AARKIF 
Sbjct: 480 HKLNPKNVSAWKMKRLMNIIRNGSLTTLDEQLQDPSLDDDKGNQIRSEFEAKLAARKIFH 539

Query: 525 NVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFRERRALA 584
           NVAKPGSKFIY  D+MRFL +DEA KT+SLFE ASE  +ISKS+LKNWVVN FRERRALA
Sbjct: 540 NVAKPGSKFIYANDIMRFLPDDEALKTLSLFEGASETNRISKSSLKNWVVNAFRERRALA 599

Query: 585 FTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCK 644
            TLNDTKTAVN+LH+ VN+++GII ++IWL+ILGI +TKFL+ +SSQVVVVAFIFGN CK
Sbjct: 600 LTLNDTKTAVNRLHKMVNIVVGIIILVIWLIILGITSTKFLVVMSSQVVVVAFIFGNMCK 659

Query: 645 TVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAI 704
            VFE+II+LFV+HPFDVGDRCEIDGVQMVVEEMNIL+TVFLR+DNQK+++PNS+L TK+I
Sbjct: 660 IVFESIIYLFVIHPFDVGDRCEIDGVQMVVEEMNILTTVFLRFDNQKVVYPNSLLWTKSI 719

Query: 705 GNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMFIFKDVEELNR 764
           GNYYRSPDMGD +EF IHI+TPAEKI  +KQRI S+IE KKDHW   PM +FKD+E LN 
Sbjct: 720 GNYYRSPDMGDGIEFSIHITTPAEKIILIKQRITSYIEGKKDHWYPAPMIVFKDMESLNS 779

Query: 765 VRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPGPPM-- 822
           VR A+W +H+MNHQD+GE+W RR+ LVEE+ KI RELDI+YRL+P+DINVR +P      
Sbjct: 780 VRIAVWPTHRMNHQDMGEKWARRSQLVEEIAKICRELDIEYRLYPLDINVRNLPTSTALP 839

Query: 823 ASDRL 827
            SDRL
Sbjct: 840 VSDRL 844
Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LH74|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPG3|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1 Back     alignment and function description
>sp|F4IME2|MSL8_ARATH Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2 Back     alignment and function description
>sp|F4IME1|MSL7_ARATH Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1 Back     alignment and function description
>sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1 Back     alignment and function description
>sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=2 SV=1 Back     alignment and function description
>sp|O74839|YC1B_SCHPO Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1 Back     alignment and function description
>sp|O14050|YEYH_SCHPO Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1 Back     alignment and function description
>sp|O28726|Y1546_ARCFU Uncharacterized MscS family protein AF_1546 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1546 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query828
449526483923 PREDICTED: mechanosensitive ion channel 0.954 0.855 0.665 0.0
449444568923 PREDICTED: mechanosensitive ion channel 0.954 0.855 0.664 0.0
357444799926 mscS family protein, putative [Medicago 0.952 0.852 0.630 0.0
356575442870 PREDICTED: uncharacterized mscS family p 0.934 0.889 0.627 0.0
356575444868 PREDICTED: uncharacterized mscS family p 0.934 0.891 0.630 0.0
255567130709 conserved hypothetical protein [Ricinus 0.826 0.964 0.708 0.0
449454364 955 PREDICTED: mechanosensitive ion channel 0.945 0.819 0.595 0.0
15218429856 mechanosensitive channel of small conduc 0.917 0.887 0.621 0.0
225428123897 PREDICTED: uncharacterized mscS family p 0.926 0.855 0.620 0.0
297842639857 mechanosensitive ion channel domain-cont 0.916 0.885 0.613 0.0
>gi|449526483|ref|XP_004170243.1| PREDICTED: mechanosensitive ion channel protein 8-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/844 (66%), Positives = 673/844 (79%), Gaps = 54/844 (6%)

Query: 4   NVKSGGVGGEEGFDFMQHGPSMEDPPSVLIGQFLHKQKASGEISLDMDLEMDELQHQASN 63
           N   GG    + F+F QH   +EDPPS LIGQFLHKQKASGE+SLDMD+EM EL    + 
Sbjct: 95  NYGEGGAKTTDDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKT- 153

Query: 64  KNNNCGSSSGININSNTKSTQGLPTVSESPTAVN----RVSFESLKRRHSN-STNNNYKD 118
                                 L TV+ESP   +    +VSFES+     N S    ++D
Sbjct: 154 ---------------------PLSTVAESPMRRSSRELKVSFESISEISENDSMRRRHRD 192

Query: 119 SP----------------------QKDSEGEVVKCTSNKSFDRNVSFNKKSALLMTKTKS 156
           SP                      + D   EV++C+SN SF R+VSF +KS+LL  KTKS
Sbjct: 193 SPLDEEHRGQQPRQCDRRAHGSNGEDDGAAEVLRCSSNSSFQRDVSFQRKSSLLRAKTKS 252

Query: 157 RLMDLPPERIEPKSGRVVGRSGQLKSGFIGKNVDEEEEDPLLEEDLPEEYKKEKISIWVL 216
           RL+D PPE  + +SGRV  +SGQ++SG I K +DEE++DP LEEDLP+EYKK  + +  L
Sbjct: 253 RLLD-PPEHQDRRSGRV-PKSGQVRSGLISKALDEEDDDPFLEEDLPDEYKKANLGVLTL 310

Query: 217 LEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCI 276
           L+W SLILII ALVC+LTI Y+++KKLWKL +WKWE++ILVLICGRLVS W +R+IVF I
Sbjct: 311 LQWASLILIIAALVCTLTIRYWRRKKLWKLEVWKWEVMILVLICGRLVSGWGIRVIVFFI 370

Query: 277 ERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILIC 336
           ERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAW+ LFD +V+RE  S+ L+Y TK+L+C
Sbjct: 371 ERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVC 430

Query: 337 LWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQE 396
           L V  ++WLVKTL+VKVLASSFHVSTYFDRIQ+ALFNQY+IETLSGPPLIEIQK EEE+E
Sbjct: 431 LLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEE 490

Query: 397 RIVSEVQKLQNAGVTIPPGLKSSVLSSPQ-SAKVIGSGRLQRTPREGKSPKLSHTFSNKD 455
           R+  EV KLQNAG TIPP LK++  S+ Q   +VIGSG LQ++PR G+S KLS T S K 
Sbjct: 491 RLAEEVIKLQNAGATIPPDLKATAFSTAQKGGRVIGSGGLQKSPR-GRSGKLSRTLSKKG 549

Query: 456 -DDGITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDSTNEDESAPHIKTEYE 514
            D+GITIDHLHKL+PKNVSAWNMKRLMNI+RHG+L+TLDEQI+D+ +EDES   IK+EYE
Sbjct: 550 GDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTLSTLDEQIKDTAHEDESTTEIKSEYE 609

Query: 515 AKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVV 574
           AK AA+KIF NVA+ GSK+IYLEDLMRF+ +DEASKTM LFE A E +KISKS+LKNWVV
Sbjct: 610 AKVAAKKIFLNVARNGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVV 669

Query: 575 NVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVV 634
           N FRERRALA TLNDTKTAVNKLHR VN+L+ +I ++IWLLILGIAT+KFLLF++SQ+V+
Sbjct: 670 NAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVL 729

Query: 635 VAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIF 694
           VAF+FGNTCKTVFE+IIFLFVMHPFDVGDRCEIDGVQM+VEEMNIL+T+FLRYDNQKIIF
Sbjct: 730 VAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIF 789

Query: 695 PNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCTNPMF 754
           PNSVLATKAI N+YRSPDMGD +EFC+HISTP EKIA M+QRI+S+IE KK+HWC  PM 
Sbjct: 790 PNSVLATKAIHNFYRSPDMGDGIEFCLHISTPPEKIAIMRQRIISYIEGKKEHWCPAPMI 849

Query: 755 IFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINV 814
           + KDVEELNR+R AIWL+H+MNHQD+GERW RRALLVEE+ KIF+ELD+QYRL P+DINV
Sbjct: 850 VLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINV 909

Query: 815 RAMP 818
           R++P
Sbjct: 910 RSLP 913

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449444568|ref|XP_004140046.1| PREDICTED: mechanosensitive ion channel protein 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357444799|ref|XP_003592677.1| mscS family protein, putative [Medicago truncatula] gi|355481725|gb|AES62928.1| mscS family protein, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|356575442|ref|XP_003555850.1| PREDICTED: uncharacterized mscS family protein At1g78610-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356575444|ref|XP_003555851.1| PREDICTED: uncharacterized mscS family protein At1g78610-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255567130|ref|XP_002524547.1| conserved hypothetical protein [Ricinus communis] gi|223536221|gb|EEF37874.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449454364|ref|XP_004144925.1| PREDICTED: mechanosensitive ion channel protein 6-like [Cucumis sativus] gi|449529323|ref|XP_004171649.1| PREDICTED: mechanosensitive ion channel protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15218429|ref|NP_177982.1| mechanosensitive channel of small conductance-like 6 [Arabidopsis thaliana] gi|75213461|sp|Q9SYM1.1|MSL6_ARATH RecName: Full=Mechanosensitive ion channel protein 6; AltName: Full=Mechanosensitive channel of small conductance-like 6; AltName: Full=MscS-Like protein 6 gi|4836872|gb|AAD30575.1|AC007260_6 Hypothetical protein [Arabidopsis thaliana] gi|332198006|gb|AEE36127.1| mechanosensitive channel of small conductance-like 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225428123|ref|XP_002278453.1| PREDICTED: uncharacterized mscS family protein At1g78610-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297842639|ref|XP_002889201.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335042|gb|EFH65460.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query828
TAIR|locus:2202965856 MSL6 "mechanosensitive channel 0.835 0.808 0.591 6.8e-230
TAIR|locus:2099382881 MSL5 "mechanosensitive channel 0.949 0.892 0.526 3.4e-219
TAIR|locus:2024927881 MSL4 "mechanosensitive channel 0.968 0.910 0.523 1.3e-217
TAIR|locus:2827671849 AT2G17000 "AT2G17000" [Arabido 0.816 0.796 0.546 4.6e-187
TAIR|locus:2143069734 MSL10 "mechanosensitive channe 0.458 0.517 0.411 3.8e-114
TAIR|locus:2180811742 MSL9 "mechanosensitive channel 0.462 0.516 0.372 5.1e-106
ASPGD|ASPL0000069490 944 AN7571 [Emericella nidulans (t 0.356 0.312 0.245 2.5e-21
DICTYBASE|DDB_G0277253870 DDB_G0277253 "mechanosensitive 0.352 0.335 0.234 5.2e-20
ASPGD|ASPL0000007479 943 AN6053 [Emericella nidulans (t 0.347 0.305 0.259 1.2e-19
POMBASE|SPAC2C4.17c 840 SPAC2C4.17c "MS ion channel pr 0.405 0.4 0.227 5.2e-18
TAIR|locus:2202965 MSL6 "mechanosensitive channel of small conductance-like 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2087 (739.7 bits), Expect = 6.8e-230, Sum P(2) = 6.8e-230
 Identities = 437/739 (59%), Positives = 521/739 (70%)

Query:   106 RRHSNSTNNNYKDSPQKDSEGEVVKCTSNKSFDRNVSFNKKSALLMTKTKSRLMD----- 160
             RR S S  NN  D       GEVVKC+ N +  +  S    S LL  +T+SRL D     
Sbjct:   136 RRDSRSNTNNNDD-------GEVVKCSGNNAPIQRSS----STLLKMRTRSRLSDPPTPQ 184

Query:   161 LPPERIEPKSGRVVGRSGQLKSGFIGKNVXXXXXXXXXXXXXXXX----YKKEKISIWVL 216
             LPP+  + KSGR+  +SGQ+KSGF GK+                     Y+K+K+S+W++
Sbjct:   185 LPPQTADMKSGRIP-KSGQMKSGFFGKSPKTQGEEEEDDPFAAEDLPEEYRKDKLSLWIV 243

Query:   217 LEWFSLILIIGALVCSLTIDYFXXXXXXXXXXXXXXXXXXXXICGRLVSSWIVRIIVFCI 276
             LEW SLILII   VC+L I                       ICGRLVSSWIV+I+VF I
Sbjct:   244 LEWLSLILIIAGFVCTLAIPSLRKKKLWELQLWKWESMVLVLICGRLVSSWIVKIVVFFI 303

Query:   277 ERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILIC 336
             ERNFLLRKRVLYFVYGVRKAVQNCLWLGLVL+AWH LFD++V +  N+  L+  TKI +C
Sbjct:   304 ERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLLAWHFLFDEKVAKAANTKALRVVTKIFVC 363

Query:   337 LWVGXXXXXXXXXXXXXXASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQE 396
             L VG              ASSFH+STYFDRIQE+LF QY+IETLSGPPLIEIQK EEE+E
Sbjct:   364 LLVGFLLWLVKTLLVKVLASSFHMSTYFDRIQESLFTQYVIETLSGPPLIEIQKNEEEEE 423

Query:   397 RIVSEVQKLQNAGVTIPPGLKSSVLSSPQSAKVIGSGRLQRTP-REGKSPKLSHTFSNK- 454
             RI  EV+K QN G     G++            I SG  Q++P + GKSP LSH  SN  
Sbjct:   424 RISVEVKKFQNPG-----GVE------------IQSGA-QKSPMKTGKSPFLSHVLSNGG 465

Query:   455 ----DDDGITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDSTNEDESAPHIK 510
                 ++ GITID LHKLNPKNVSAW MKRLMNIIR+GSLTTLDEQ+QD + +D+    I+
Sbjct:   466 GGGGENKGITIDSLHKLNPKNVSAWKMKRLMNIIRNGSLTTLDEQLQDPSLDDDKGNQIR 525

Query:   511 TEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALK 570
             +E+EAK AARKIF NVAKPGSKFIY  D+MRFL +DEA KT+SLFE ASE  +ISKS+LK
Sbjct:   526 SEFEAKLAARKIFHNVAKPGSKFIYANDIMRFLPDDEALKTLSLFEGASETNRISKSSLK 585

Query:   571 NWVVNVFRERRALAFTLNDTKTAVNKLHRFVNXXXXXXXXXXXXXXXXXATTKFLLFISS 630
             NWVVN FRERRALA TLNDTKTAVN+LH+ VN                  +TKFL+ +SS
Sbjct:   586 NWVVNAFRERRALALTLNDTKTAVNRLHKMVNIVVGIIILVIWLIILGITSTKFLVVMSS 645

Query:   631 QVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQ 690
             QVVVVAFIFGN CK VFE+II+LFV+HPFDVGDRCEIDGVQMVVEEMNIL+TVFLR+DNQ
Sbjct:   646 QVVVVAFIFGNMCKIVFESIIYLFVIHPFDVGDRCEIDGVQMVVEEMNILTTVFLRFDNQ 705

Query:   691 KIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHWCT 750
             K+++PNS+L TK+IGNYYRSPDMGD +EF IHI+TPAEKI  +KQRI S+IE KKDHW  
Sbjct:   706 KVVYPNSLLWTKSIGNYYRSPDMGDGIEFSIHITTPAEKIILIKQRITSYIEGKKDHWYP 765

Query:   751 NPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPI 810
              PM +FKD+E LN VR A+W +H+MNHQD+GE+W RR+ LVEE+ KI RELDI+YRL+P+
Sbjct:   766 APMIVFKDMESLNSVRIAVWPTHRMNHQDMGEKWARRSQLVEEIAKICRELDIEYRLYPL 825

Query:   811 DINVRAMPGPPM--ASDRL 827
             DINVR +P       SDRL
Sbjct:   826 DINVRNLPTSTALPVSDRL 844
GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2099382 MSL5 "mechanosensitive channel of small conductance-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024927 MSL4 "mechanosensitive channel of small conductance-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827671 AT2G17000 "AT2G17000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143069 MSL10 "mechanosensitive channel of small conductance-like 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180811 MSL9 "mechanosensitive channel of small conductance-like 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000069490 AN7571 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277253 DDB_G0277253 "mechanosensitive ion channel domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007479 AN6053 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC2C4.17c SPAC2C4.17c "MS ion channel protein 2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SYM1MSL6_ARATHNo assigned EC number0.62130.91780.8878yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
MSL6
MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6); MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6 (MSL6); LOCATED IN- plasma membrane, membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Membrane protein, At2g17000, predicted (InterPro-IPR016688), Mechanosensitive ion channel MscS (InterPro-IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro-IPR010920); BEST Arabidopsis thaliana protein match is- MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4) (TAIR-AT1G53470.1); Has 2379 Blast hits to 2374 p [...] (856 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G80670
transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (349 aa)
    •   0.819
AT5G41450
zinc finger (C3HC4-type RING finger) family protein; zinc finger (C3HC4-type RING finger) famil [...] (164 aa)
      • 0.651
AT5G01200
myb family transcription factor; myb family transcription factor; FUNCTIONS IN- transcription f [...] (267 aa)
      • 0.651
DL3605W
VQ motif-containing protein; VQ motif-containing protein; FUNCTIONS IN- molecular_function unkn [...] (193 aa)
      • 0.651
AT1G75170
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; SEC14 cytosol [...] (296 aa)
      • 0.651
AT1G50630
unknown protein; unknown protein; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 12 growt [...] (453 aa)
      • 0.651
AT1G13195
zinc finger (C3HC4-type RING finger) family protein; zinc finger (C3HC4-type RING finger) famil [...] (260 aa)
      • 0.651
AT1G07870
protein kinase family protein; protein kinase family protein; FUNCTIONS IN- protein serine/thre [...] (423 aa)
      • 0.651
AT5G35460
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (381 aa)
      • 0.625
AT4G33905
peroxisomal membrane protein 22 kDa, putative; peroxisomal membrane protein 22 kDa, putative; I [...] (261 aa)
      • 0.599

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query828
pfam00924202 pfam00924, MS_channel, Mechanosensitive ion channe 9e-20
COG0668316 COG0668, MscS, Small-conductance mechanosensitive 2e-18
COG3264835 COG3264, COG3264, Small-conductance mechanosensiti 5e-06
PRK10334286 PRK10334, PRK10334, mechanosensitive channel MscS; 0.002
>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel Back     alignment and domain information 
 Score = 88.0 bits (219), Expect = 9e-20
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 6/204 (2%)

Query: 601 VNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFD 660
           +  LI ++ ++I L  LG+  +  L  + +  + + F   +    +   II LF   PF 
Sbjct: 2   LKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILF-EKPFK 60

Query: 661 VGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFC 720
           +GD  EI  V+  VE++ I ST    +D + +  PNS + T  I N  RSP     V   
Sbjct: 61  IGDWIEIGDVEGTVEDIGIRSTTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVEVSIG 120

Query: 721 IHISTPAEKIAQMKQRILSFIENKKDHWCTNPM-FIFKDVEELNRVRFAIWLSHKMNHQD 779
           +  S+  +K+ ++ + +             +P   +       + + F + +  K     
Sbjct: 121 VAYSSDPKKLEKVIEILKEAAYEHP-LVLKDPEPPVVFGEFGDSSLNFEVRVWVK---TL 176

Query: 780 IGERWERRALLVEEMTKIFRELDI 803
            GE +  R+ L   + K   E  I
Sbjct: 177 PGEYFNVRSELNLRIKKALEENGI 200

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202
>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|182386 PRK10334, PRK10334, mechanosensitive channel MscS; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 828
KOG4629714 consensus Predicted mechanosensitive ion channel [ 100.0
PRK10334286 mechanosensitive channel MscS; Provisional 100.0
PRK109291109 putative mechanosensitive channel protein; Provisi 100.0
PRK112811113 hypothetical protein; Provisional 100.0
PF00924206 MS_channel: Mechanosensitive ion channel; InterPro 100.0
PRK11465741 putative mechanosensitive channel protein; Provisi 99.97
COG3264835 Small-conductance mechanosensitive channel [Cell e 99.97
COG0668316 MscS Small-conductance mechanosensitive channel [C 99.96
COG5126160 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S 91.2
KOG0044193 consensus Ca2+ sensor (EF-Hand superfamily) [Signa 90.83
cd0005267 EH Eps15 homology domain; found in proteins implic 90.62
PF0003629 EF-hand_1: EF hand; InterPro: IPR018248 Many calci 89.14
cd0502693 S-100Z S-100Z: S-100Z domain found in proteins sim 88.53
PF1349966 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 88.23
smart0002796 EH Eps15 homology domain. Pair of EF hand motifs t 88.07
cd0502289 S-100A13 S-100A13: S-100A13 domain found in protei 87.51
cd0021388 S-100 S-100: S-100 domain, which represents the la 85.89
cd0502592 S-100A1 S-100A1: S-100A1 domain found in proteins 85.65
cd0502389 S-100A11 S-100A11: S-100A11 domain found in protei 85.6
cd0502988 S-100A6 S-100A6: S-100A6 domain found in proteins 85.47
KOG0027151 consensus Calmodulin and related proteins (EF-Hand 82.61
PTZ00183158 centrin; Provisional 80.78
cd0503088 calgranulins Calgranulins: S-100 domain found in p 80.77
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-111  Score=972.33  Aligned_cols=660  Identities=50%  Similarity=0.834  Sum_probs=602.0

Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCceeeecCCccccccccccccccccccccccccCCCCCCCCCCCCCccccCccccc
Q 003345          102 ESLKRRHSNSTNNNYKDSPQKDSEGEVVKCTSNKSFDRNVSFNKKSALLMTKTKSRLMDLPPERIEPKSGRVVGRSGQLK  181 (828)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~~~~~  181 (828)
                      +..|+++.++.... .+..+-.+.+++++||++...         +...+.+++||++|||-+. .+  +++ +++|+..
T Consensus        51 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~t~~~~~---------~~~~~~~~~s~~f~p~~~~-~~--n~~-~~~~~~~  116 (714)
T KOG4629|consen   51 GRVRRRSLPYILYS-QEELRRTEYGETVRCTSRKMP---------SMIFFASKRSRDFDPAEPN-NR--NRF-SNSGETT  116 (714)
T ss_pred             chhhhccccceecc-cccccccCCcceEEeccccCh---------HhhhhhhhcccccCCCCCC-CC--Ccc-cCccccc
Confidence            55666555443332 223334577899999998443         4678889999999977222 11  555 7899999


Q ss_pred             ccCCCCCCCCccCCcCCCCCChhHHhhcccchhhHHHHHHHHHHHHHhheeeeecccCceeeeehhhHHHHHHHHHHHhh
Q 003345          182 SGFIGKNVDEEEEDPLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICG  261 (828)
Q Consensus       182 ~g~~~~~~~~~~~d~~~~~~~~~~~kk~~~~~~~~~~w~~lv~ii~~Lv~sl~i~~~~~~~l~~l~lWkW~v~~lvl~~G  261 (828)
                      +|..++..+|+|++++-.+++|++.++.+.+++.+++|+.+++++++|+|+|+++...+..+|++..|+|++.+++++||
T Consensus       117 s~~~a~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~  196 (714)
T KOG4629|consen  117 SGELAPSEKDEEESIFSEEKLPDETRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITA  196 (714)
T ss_pred             cccccCCcccccccccchhccchhhhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHH
Confidence            99999987789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcceEeeEeechhheeeeEEEEEeceecchhHHHHHH-HHHHHHHHhhccccccccccchHHHHHHHHHHHHHH
Q 003345          262 RLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLG-LVLIAWHCLFDQRVERETNSDVLKYATKILICLWVG  340 (828)
Q Consensus       262 rlvs~w~v~~~v~lie~nfllrk~vLyfv~Glrk~v~~~~Wl~-lvl~~w~~l~~~~v~~~~~~~~~~~v~kvL~~~lv~  340 (828)
                      ++++.|.+.+++|++++|++||+++||||||+++.+|+|+|++ +++++|+.+||..+.+.+..+.+.+++++ +|+|++
T Consensus       197 ~lv~~~~~~~vvf~~~~n~~~r~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~~l~~~~~~-i~lli~  275 (714)
T KOG4629|consen  197 VLVSSWFAALVVFLIESNFLRRKKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAKFLAFVTML-ITLLIT  275 (714)
T ss_pred             HHHHhhHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh-hhhhHH
Confidence            9999999999999999999999999999999999999999999 99999999999999988777799999999 999999


Q ss_pred             HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHhcCCcCCCCCCCCC
Q 003345          341 VMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQERIVSEVQKLQNAGVTIPPGLKSSV  420 (828)
Q Consensus       341 ~~i~l~k~~lvk~iA~sFH~~~y~dRIqes~~n~~~l~tLs~~~l~~~~~~~~e~~~~~~~~~~~~~~g~~~p~~~~~s~  420 (828)
                      ++.|++||+++|++|++||+++|++||||++|+||+|++|+|||+.       |            ++|+..+.+..   
T Consensus       276 ~~~~lv~ti~~kv~as~f~~s~~~~rI~e~~f~q~~l~~Lsg~p~~-------e------------~~gr~s~~~~~---  333 (714)
T KOG4629|consen  276 EFMWLVKTILMKVIASSFHRSTYFSRIQESVFTQEVLETLSGPPRE-------E------------DVGRESTFRAI---  333 (714)
T ss_pred             HHHhhchhhhhHHHHHHHhHHHHHhhcchhhhhHHHHHHhcCCccc-------c------------cccccccceee---
Confidence            9999999999999999999999999999999999999999999972       1            13443111111   


Q ss_pred             CCCcccccccCCCccccCCCCCCCCccccccCCCCCCCcchhcccccCCCCcchhhHHHHHHHHhcCcccchhhhhhccc
Q 003345          421 LSSPQSAKVIGSGRLQRTPREGKSPKLSHTFSNKDDDGITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDST  500 (828)
Q Consensus       421 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~vsa~~~krl~~~vr~~~lst~~~~l~~~~  500 (828)
                                .+            +..++.+    ..+|.++++|++|..++|||+|+|+|+.++.+++++++.+.+.+.
T Consensus       334 ----------~s------------~~~~r~~----s~~i~~~~l~~~~~~~~sa~~~~~~~~~~~~~~~t~l~~~~~~s~  387 (714)
T KOG4629|consen  334 ----------FS------------PGLSRSG----SAKIGMDKLHKIKKKNVSAWNMRRLMTILAAGGLTTLSPGFQLST  387 (714)
T ss_pred             ----------cc------------ccccchh----hcccccchhhhhhHhhhcHhhhhHHHHHHhccCcccCCccccccc
Confidence                      00            0111111    122888999999999999999999999999999999999988776


Q ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhccCCCCccccHhHHhhcCCHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHh
Q 003345          501 NEDESAPHIKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFRER  580 (828)
Q Consensus       501 ~~~~~~~~i~s~~~AkalAr~If~~~~~~g~~~I~~eDl~~f~~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~iyrER  580 (828)
                      .++....+++|+.+|+++|++||+++++||..+++++|+.+|+++|+|+.+|++|++..+.+ |+++.+++|++++|+||
T Consensus       388 ~~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~E~a~~~~slfe~~~~~~-Itrs~~~~~iv~~~~ER  466 (714)
T KOG4629|consen  388 SKDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGDEEAERAFSLFEGASDEN-ITRSSFKEWIVNIYRER  466 (714)
T ss_pred             cccchhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCHHHHHHHHHhhhhhcccC-ccHHHHHHHHHHHHHHH
Confidence            55566779999999999999999999999999999999999999999999999999886655 99999999999999999


Q ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCcc
Q 003345          581 RALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFD  660 (828)
Q Consensus       581 kaLa~SLkd~~sav~~L~~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFd  660 (828)
                      ++|+++|+|+++++++|++++.+++.++++++++..+|++++++++.++++.++++|+|+++++++|.|+||+|+.||||
T Consensus       467 k~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyD  546 (714)
T KOG4629|consen  467 KALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYD  546 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEECCeEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecCCCceEEEEEEEecCCCHHHHHHHHHHHHHH
Q 003345          661 VGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSF  740 (828)
Q Consensus       661 VGDrV~IdG~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS~~~~~~i~~~V~~~T~~ekIe~Lke~I~~~  740 (828)
                      |||||.|||++++|+||+|++|+|.++||++|+||||+|++++|.|++||+.|.+.++|.++..|+.+|+++++++|.+|
T Consensus       547 vGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~y  626 (714)
T KOG4629|consen  547 VGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEY  626 (714)
T ss_pred             CCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCcCCCCEEEEEecCCCceEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEeecCCCC
Q 003345          741 IENKKDHWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPGP  820 (828)
Q Consensus       741 v~~~~~~~~p~~~V~v~~i~d~n~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey~~Pp~~V~l~~~p~~  820 (828)
                      ++++|.+|+|.+.+++.++++.|++.+.+|++|++||||..+++.||.++++++.++++++||+|.++|+++++++.|  
T Consensus       627 lks~~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~~~--  704 (714)
T KOG4629|consen  627 LKSSPDDYYPDLMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDINLKNLP--  704 (714)
T ss_pred             HhcCccccccchhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchhhhcCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999988  


Q ss_pred             CCCCCCC
Q 003345          821 PMASDRL  827 (828)
Q Consensus       821 p~~s~~~  827 (828)
                      |..+||.
T Consensus       705 ~~~~d~~  711 (714)
T KOG4629|consen  705 PVSSDRS  711 (714)
T ss_pred             CcccCCC
Confidence            7777764

>PRK10334 mechanosensitive channel MscS; Provisional Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation Back     alignment and domain information
>PRK11465 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms] Back     alignment and domain information
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction Back     alignment and domain information
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand Back     alignment and domain information
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z Back     alignment and domain information
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E Back     alignment and domain information
>smart00027 EH Eps15 homology domain Back     alignment and domain information
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13 Back     alignment and domain information
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif Back     alignment and domain information
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1 Back     alignment and domain information
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11 Back     alignment and domain information
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6 Back     alignment and domain information
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00183 centrin; Provisional Back     alignment and domain information
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query828
2vv5_A286 MSCS, small-conductance mechanosensitive channel; 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286 Back     alignment and structure
 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 12/147 (8%)

Query: 569 LKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFI 628
           +   + N     R +     D  T  + L   V   I   T+I  L  +G+ T   +  +
Sbjct: 44  IARMISNAVN--RLMISRKID-ATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVL 100

Query: 629 SSQVVVVAF----IFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVF 684
            +  +VV         N       A + L +  PF  G+  ++ GV   V  + I ST  
Sbjct: 101 GAAGLVVGLALQGSLSN-----LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTM 155

Query: 685 LRYDNQKIIFPNSVLATKAIGNYYRSP 711
              D + I+ PN  +    I N+ R P
Sbjct: 156 RTADGKIIVIPNGKIIAGNIINFSREP 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query828
2vv5_A286 MSCS, small-conductance mechanosensitive channel; 100.0
3udc_A285 Small-conductance mechanosensitive channel, C-TER 100.0
2joj_A77 Centrin protein; N-terminal domain, centrin soluti 93.5
2pmy_A91 RAS and EF-hand domain-containing protein; rasef, 92.97
2ktg_A85 Calmodulin, putative; ehcam, Ca-binding protein, p 92.48
2kgr_A111 Intersectin-1; structure, alternative splicing, ca 92.42
1tiz_A67 Calmodulin-related protein, putative; helix-turn-h 92.4
3akb_A166 Putative calcium binding protein; EF-hand, metal b 92.21
1eh2_A106 EPS15; calcium binding, signaling domain, NPF bind 91.9
1fi6_A92 EH domain protein REPS1; EPS15 homology domain, EF 91.89
3li6_A66 Calcium-binding protein; calcium signaling protein 91.66
2ccm_A191 Calexcitin; EF hand, calcium, signaling protein; 1 91.66
1q80_A174 SCP, sarcoplasmic calcium-binding protein; all-alp 91.35
2f33_A263 Calbindin; EF-hand, Ca2+-binding, metal binding pr 91.28
1qjt_A99 EH1, epidermal growth factor receptor substrate su 91.27
1uhk_A191 Aequorin 2, aequorin; EF-hand motif, complex, lumi 91.22
2be4_A272 Hypothetical protein LOC449832; DR.36843, BC083168 91.11
2sas_A185 Sarcoplasmic calcium-binding protein; 2.40A {Branc 91.09
1avs_A90 Troponin C; muscle contraction, calcium-activated, 91.07
1qv0_A195 Obelin, OBL; photoprotein, bioluminescence, atomic 91.02
3n22_A98 Protein S100-A2; EF-hand, calcium-binding, zinc-bi 90.7
1k9u_A78 Polcalcin PHL P 7; pollen allergen, calcium-bindin 90.43
3khe_A191 Calmodulin-like domain protein kinase isoform 3; c 90.32
3qrx_A169 Centrin; calcium-binding, EF-hand, cell division, 89.7
1iq3_A110 Ralbp1-interacting protein (partner of ralbp1); EF 89.67
2b1u_A71 Calmodulin-like protein 5; CLSP, calmodulin-like S 89.51
2hpk_A208 Photoprotein berovin; structural genomics, PSI, pr 89.51
1c07_A95 Protein (epidermal growth factor receptor pathway 89.49
2kn2_A92 Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco 89.39
2kz2_A94 Calmodulin, CAM; TR2C, metal binding protein; NMR 89.38
2opo_A86 Polcalcin CHE A 3; calcium-binding protein, dimer, 89.37
1nya_A176 Calerythrin; EF-hand, metal binding protein; NMR { 89.2
2bl0_B145 Myosin regulatory light chain; muscle protein, sli 88.87
3e3r_A204 Calcyphosin, calcyphosine; human calcyphosine, EF- 88.83
5pal_A109 Parvalbumin; calcium-binding protein; 1.54A {Triak 88.75
2lv7_A100 Calcium-binding protein 7; metal binding protein; 88.67
1dtl_A161 Cardiac troponin C; helix-turn-helix, structural p 88.62
3dd4_A229 KV channel-interacting protein 4; EF-hands protein 88.52
2lnk_A113 Protein S100-A4; EF-hand, calcium binding, all alp 88.44
2pvb_A108 Protein (parvalbumin); calcium binding protein, me 88.16
3a4u_B143 Multiple coagulation factor deficiency protein 2; 88.1
1top_A162 Troponin C; contractIle system protein; 1.78A {Gal 88.06
4eto_A93 Protein S100-A4; calcium-binding protein, EF-hand, 88.01
2wcb_A95 Protein S100-A12; calcium signalling, HOST-parasit 88.0
1rwy_A109 Parvalbumin alpha; EF-hand, calcium-binding, calci 87.89
2y5i_A99 S100Z, S100 calcium binding protein Z; metal-bindi 87.88
3nxa_A100 Protein S100-A16; S100 family, calcium binding pro 87.85
3fs7_A109 Parvalbumin, thymic; calcium-binding protein, EF-h 87.8
3ll8_B155 Calcineurin subunit B type 1; protein-peptide dock 87.8
3fwb_A161 Cell division control protein 31; gene gating, com 87.77
1qls_A99 S100C protein, calgizzarin; metal-binding protein/ 87.76
3zwh_A104 Protein S100-A4; Ca-binding protein-motor protein 87.65
2obh_A143 Centrin-2; DNA repair complex EF hand superfamily 87.55
1jfj_A134 Ehcabp, calcium-binding protein; EF-hand, helix-lo 87.45
2mys_B166 Myosin; muscle protein, motor protein; HET: MLY; 2 87.41
3nso_A101 Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta 87.4
1s6c_A183 KV4 potassium channel-interacting protein kchip1B; 87.3
1pva_A110 Parvalbumin; calcium binding; 1.65A {Esox lucius} 87.29
3h4s_E135 KCBP interacting Ca2+-binding protein; kinesin, mo 87.1
2jq6_A139 EH domain-containing protein 1; metal binding prot 87.03
4ds7_A147 Calmodulin, CAM; protein binding, metal binding, s 86.92
2l2e_A190 Calcium-binding protein NCS-1; NCS1P, myristoylate 86.9
1rro_A108 RAT oncomodulin; calcium-binding protein; 1.30A {R 86.88
1bu3_A109 Calcium-binding protein; 1.65A {Merluccius bilinea 86.88
1g8i_A190 Frequenin, neuronal calcium sensor 1; calcium bind 86.79
1qx2_A76 Vitamin D-dependent calcium-binding protein, INTE; 86.77
3k21_A191 PFCDPK3, calcium-dependent protein kinase 3; calci 86.72
1exr_A148 Calmodulin; high resolution, disorder, metal trans 86.52
1wdc_C156 Scallop myosin; calcium binding protein, muscle pr 86.43
2obh_A143 Centrin-2; DNA repair complex EF hand superfamily 86.39
1m45_A148 MLC1P, myosin light chain; protein-peptide complex 86.31
1rwy_A109 Parvalbumin alpha; EF-hand, calcium-binding, calci 86.12
3rm1_A92 Protein S100-B; alpha-helical, EF hand, metal bind 86.11
1j7q_A86 CAVP, calcium vector protein; EF-hand family, calc 86.1
3h4s_E135 KCBP interacting Ca2+-binding protein; kinesin, mo 86.07
1j55_A95 S-100P protein; metal binding protein; 2.00A {Homo 86.05
2ovk_C159 Myosin catalytic light chain LC-1, mantle muscle, 86.03
2ehb_A207 Calcineurin B-like protein 4; protein complex, Ca( 85.98
1c7v_A81 CAVP, calcium vector protein; EF-hand family, calc 85.96
3sjs_A220 URE3-BP sequence specific DNA binding protein; EF- 85.83
2jul_A256 Calsenilin; EF-hand, calcium, LXXLL, DNA binding p 85.8
1bu3_A109 Calcium-binding protein; 1.65A {Merluccius bilinea 85.77
3ox6_A153 Calcium-binding protein 1; EF-hand, calcium-sensor 85.58
1fpw_A190 Yeast frequenin, calcium-binding protein NCS-1; EF 85.52
2hps_A186 Coelenterazine-binding protein with bound coelent; 85.48
1xk4_C113 Calgranulin B; S100 family, heterotetramer, metal 85.4
2bl0_C142 Myosin regulatory light chain; muscle protein, sli 85.39
1g8i_A190 Frequenin, neuronal calcium sensor 1; calcium bind 85.35
2d58_A107 Allograft inflammatory factor 1; EF-hand, metal bi 85.27
2l2e_A190 Calcium-binding protein NCS-1; NCS1P, myristoylate 85.25
1s1e_A224 KV channel interacting protein 1; kchip, calcium-b 85.24
1jba_A204 GCAP-2, protein (guanylate cyclase activating prot 85.22
1a4p_A96 S100A10; S100 family, EF-hand protein, ligand of a 85.17
1h8b_A75 ACT-EF34, alpha-actinin 2, skeletal muscle isoform 85.16
5pal_A109 Parvalbumin; calcium-binding protein; 1.54A {Triak 85.13
3fwb_A161 Cell division control protein 31; gene gating, com 85.1
3j04_B143 Myosin regulatory light chain 2, smooth muscle MA 85.06
3khe_A191 Calmodulin-like domain protein kinase isoform 3; c 85.06
1bjf_A193 Neurocalcin delta; calcium-binding, myristoylation 85.05
2f2o_A179 Calmodulin fused with calmodulin-binding domain of 85.03
3pm8_A197 PFCDPK2, calcium-dependent protein kinase 2; malar 84.99
1fpw_A190 Yeast frequenin, calcium-binding protein NCS-1; EF 84.96
1k2h_A93 S100A1, S-100 protein, alpha chain; non-covalent h 84.95
2lmt_A148 Calmodulin-related protein 97A; spermatogenesis, m 84.75
1top_A162 Troponin C; contractIle system protein; 1.78A {Gal 84.66
1y1x_A191 Leishmania major homolog of programmed cell death 84.65
2zfd_A226 Calcineurin B-like protein 2; calcium binding prot 84.63
2pvb_A108 Protein (parvalbumin); calcium binding protein, me 84.52
2mys_C149 Myosin; muscle protein, motor protein; HET: MLY; 2 84.4
2d8n_A207 Recoverin; structural genomics, NPPSFA, national p 84.26
2jul_A256 Calsenilin; EF-hand, calcium, LXXLL, DNA binding p 83.81
2l4h_A214 Calcium and integrin-binding protein 1; metal bind 83.75
2ovk_B153 RLC, myosin regulatory light chain LC-2, mantle mu 83.69
1s6c_A183 KV4 potassium channel-interacting protein kchip1B; 83.64
3ll8_B155 Calcineurin subunit B type 1; protein-peptide dock 83.61
3ox6_A153 Calcium-binding protein 1; EF-hand, calcium-sensor 83.58
2jnf_A158 Troponin C; stretch activated muscle contraction, 83.5
2bec_A202 Calcineurin B homologous protein 2; calcineurin-ho 83.43
3mse_B180 Calcium-dependent protein kinase, putative; CDPKS, 83.27
3qrx_A169 Centrin; calcium-binding, EF-hand, cell division, 83.14
1k94_A165 Grancalcin; penta-EF-hand protein, calcium binding 83.1
2kax_A92 Protein S100-A5; EF-hand, calcium binding protien, 83.07
2r2i_A198 Guanylyl cyclase-activating protein 1; EF hand, GC 83.06
1wdc_B156 Scallop myosin; calcium binding protein, muscle pr 83.03
1xk4_A93 Calgranulin A; S100 family, heterotetramer, metal 83.03
3dd4_A229 KV channel-interacting protein 4; EF-hands protein 82.99
1ggw_A140 Protein (CDC4P); light chain, cytokinesis, cell cy 82.96
3k21_A191 PFCDPK3, calcium-dependent protein kinase 3; calci 82.91
2ggz_A211 Guanylyl cyclase-activating protein 3; EF hand, gu 82.88
1wlz_A105 DJBP, CAP-binding protein complex interacting prot 82.68
4drw_A121 Protein S100-A10/annexin A2 chimeric protein; atyp 82.64
2d8n_A207 Recoverin; structural genomics, NPPSFA, national p 82.64
3akb_A166 Putative calcium binding protein; EF-hand, metal b 82.58
3fia_A121 Intersectin-1; EH 1 domain, NESG, structural genom 82.58
1nya_A176 Calerythrin; EF-hand, metal binding protein; NMR { 82.5
1bjf_A193 Neurocalcin delta; calcium-binding, myristoylation 82.46
1s1e_A224 KV channel interacting protein 1; kchip, calcium-b 82.43
1k8u_A90 S100A6, calcyclin, CACY; calcium regulatory protei 82.36
3fs7_A109 Parvalbumin, thymic; calcium-binding protein, EF-h 82.35
4ds7_A147 Calmodulin, CAM; protein binding, metal binding, s 82.23
1w7j_B151 Myosin light chain 1; motor protein, unconventiona 82.2
2mys_C149 Myosin; muscle protein, motor protein; HET: MLY; 2 82.08
1gjy_A167 Sorcin, CP-22, V19; calcium binding, calcium-bindi 82.02
2znd_A172 Programmed cell death protein 6; penta-EF-hand pro 81.9
2ovk_C159 Myosin catalytic light chain LC-1, mantle muscle, 81.88
1rro_A108 RAT oncomodulin; calcium-binding protein; 1.30A {R 81.82
3q5i_A504 Protein kinase; CDPK, malaria, phosphotransferase, 81.76
2aao_A166 CDPK, calcium-dependent protein kinase, isoform AK 81.68
2i7a_A174 Calpain 13; calcium-dependent cytoplasmic cysteine 81.58
2r2i_A198 Guanylyl cyclase-activating protein 1; EF hand, GC 81.57
3sjs_A220 URE3-BP sequence specific DNA binding protein; EF- 81.54
3e3r_A204 Calcyphosin, calcyphosine; human calcyphosine, EF- 81.34
1jfj_A134 Ehcabp, calcium-binding protein; EF-hand, helix-lo 81.09
2h2k_A106 Protein S100-A13; calcium binding protein, metal b 81.07
2znd_A172 Programmed cell death protein 6; penta-EF-hand pro 80.75
3nyv_A484 Calmodulin-domain protein kinase 1; serine/threoni 80.72
1juo_A198 Sorcin; calcium-binding proteins, penta-EF-hand, P 80.5
3pm8_A197 PFCDPK2, calcium-dependent protein kinase 2; malar 80.49
2bl0_C142 Myosin regulatory light chain; muscle protein, sli 80.4
2be4_A272 Hypothetical protein LOC449832; DR.36843, BC083168 80.37
3a8r_A179 Putative uncharacterized protein; EF-hand, membran 80.31
1dtl_A161 Cardiac troponin C; helix-turn-helix, structural p 80.28
2bec_A202 Calcineurin B homologous protein 2; calcineurin-ho 80.21
1jba_A204 GCAP-2, protein (guanylate cyclase activating prot 80.17
3dtp_E196 RLC, myosin regulatory light chain; muscle protein 80.16
1y1x_A191 Leishmania major homolog of programmed cell death 80.08
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Back     alignment and structure
Probab=100.00  E-value=2e-36  Score=324.14  Aligned_cols=220  Identities=18%  Similarity=0.280  Sum_probs=199.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCccCCCEEEEC
Q 003345          589 DTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEID  668 (828)
Q Consensus       589 d~~sav~~L~~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFdVGDrV~Id  668 (828)
                      ...+....+.+++.+++++++++++|..+|++++++++++|++++|+||++|++++|+ .||++|+++|||+|||||+++
T Consensus        61 ~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~q~~l~n~-~sGi~i~~~~pf~vGD~I~i~  139 (286)
T 2vv5_A           61 IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNL-AAGVLLVMFRPFRAGEYVDLG  139 (286)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHTHHHHHH-HHHHHHHTTCSSCTTCEEESS
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHhcCCccCCCEEEEC
Confidence            4467888899999999999999999999999999999999999999999999999995 589999999999999999999


Q ss_pred             CeEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCC-
Q 003345          669 GVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDH-  747 (828)
Q Consensus       669 G~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS~~~~~~i~~~V~~~T~~ekIe~Lke~I~~~v~~~~~~-  747 (828)
                      |..|+|++|++++|+++++||+.++|||+.+.+++|.|+||++.++..+++.|+|++|++++   ++.++++++++|.. 
T Consensus       140 g~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~~~~v~v~y~~d~~~v---~~~l~~~~~~~~~vl  216 (286)
T 2vv5_A          140 GVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQV---KQILTNIIQSEDRIL  216 (286)
T ss_dssp             SCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEEEEEEEECTTSCHHHH---HHHHHHHHHHCTTBC
T ss_pred             CEEEEEEEEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCCcEEEEEEEEEcCCCCHHHH---HHHHHHHHHhCcccc
Confidence            99999999999999999999999999999999999999999988888999999999998776   56688888888865 


Q ss_pred             cCCCCEEEEEecCCCc-eEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEeecCCC
Q 003345          748 WCTNPMFIFKDVEELN-RVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPG  819 (828)
Q Consensus       748 ~~p~~~V~v~~i~d~n-~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey~~Pp~~V~l~~~p~  819 (828)
                      .+|+|.+.+.++++.. .+++++|+..       .+++..|++++.+++++|+++||++|+|++++++.+.+.
T Consensus       217 ~~p~p~v~v~~~~~~~i~~~v~~~~~~-------~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v~~~~~~~  282 (286)
T 2vv5_A          217 KDREMTVRLNELGASSINFVVRVWSNS-------GDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKE  282 (286)
T ss_dssp             TTSCEEEEEEEECSSSEEEEEEEEEET-------TTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEECC--
T ss_pred             cCCCCEEEEEEecCCeEEEEEEEEEcc-------chHHHHHHHHHHHHHHHHHHCCCcCCCCceEEEeccCCc
Confidence            5688899999999854 6666677653       346889999999999999999999999999999987543
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A* Back     alignment and structure
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus} Back     alignment and structure
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5 Back     alignment and structure
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A Back     alignment and structure
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A Back     alignment and structure
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6 Back     alignment and structure
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica} Back     alignment and structure
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii} Back     alignment and structure
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A Back     alignment and structure
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A Back     alignment and structure
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6 Back     alignment and structure
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A Back     alignment and structure
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Back     alignment and structure
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Back     alignment and structure
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A Back     alignment and structure
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A* Back     alignment and structure
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10 Back     alignment and structure
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii} Back     alignment and structure
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Back     alignment and structure
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6 Back     alignment and structure
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola} Back     alignment and structure
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 Back     alignment and structure
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max} Back     alignment and structure
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus} Back     alignment and structure
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A Back     alignment and structure
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Back     alignment and structure
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Back     alignment and structure
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4 Back     alignment and structure
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ... Back     alignment and structure
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A Back     alignment and structure
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A Back     alignment and structure
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A Back     alignment and structure
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C Back     alignment and structure
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Back     alignment and structure
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A* Back     alignment and structure
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A Back     alignment and structure
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A Back     alignment and structure
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio} Back     alignment and structure
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A Back     alignment and structure
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A Back     alignment and structure
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B* Back     alignment and structure
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A Back     alignment and structure
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A Back     alignment and structure
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} Back     alignment and structure
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Back     alignment and structure
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Back     alignment and structure
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B Back     alignment and structure
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A Back     alignment and structure
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E Back     alignment and structure
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A Back     alignment and structure
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A Back     alignment and structure
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A Back     alignment and structure
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A Back     alignment and structure
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4 Back     alignment and structure
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A Back     alignment and structure
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A Back     alignment and structure
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A Back     alignment and structure
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ... Back     alignment and structure
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ... Back     alignment and structure
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Back     alignment and structure
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A Back     alignment and structure
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A Back     alignment and structure
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ... Back     alignment and structure
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A Back     alignment and structure
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A Back     alignment and structure
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A Back     alignment and structure
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A Back     alignment and structure
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Back     alignment and structure
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus} Back     alignment and structure
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4 Back     alignment and structure
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A Back     alignment and structure
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A Back     alignment and structure
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A Back     alignment and structure
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A* Back     alignment and structure
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A Back     alignment and structure
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens} Back     alignment and structure
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5 Back     alignment and structure
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A Back     alignment and structure
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4 Back     alignment and structure
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A Back     alignment and structure
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus} Back     alignment and structure
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii} Back     alignment and structure
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A Back     alignment and structure
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Back     alignment and structure
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A Back     alignment and structure
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A Back     alignment and structure
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A Back     alignment and structure
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Back     alignment and structure
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Back     alignment and structure
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A Back     alignment and structure
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A Back     alignment and structure
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C* Back     alignment and structure
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A Back     alignment and structure
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus} Back     alignment and structure
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A Back     alignment and structure
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E Back     alignment and structure
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B* Back     alignment and structure
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A Back     alignment and structure
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A Back     alignment and structure
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Back     alignment and structure
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum} Back     alignment and structure
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Back     alignment and structure
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Back     alignment and structure
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A Back     alignment and structure
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Back     alignment and structure
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ... Back     alignment and structure
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A Back     alignment and structure
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A Back     alignment and structure
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5 Back     alignment and structure
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A Back     alignment and structure
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens} Back     alignment and structure
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7 Back     alignment and structure
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens} Back     alignment and structure
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A Back     alignment and structure
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A Back     alignment and structure
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A Back     alignment and structure
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Back     alignment and structure
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5 Back     alignment and structure
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A Back     alignment and structure
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A Back     alignment and structure
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A Back     alignment and structure
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C Back     alignment and structure
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C* Back     alignment and structure
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Back     alignment and structure
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Back     alignment and structure
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A Back     alignment and structure
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Back     alignment and structure
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens} Back     alignment and structure
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Back     alignment and structure
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Back     alignment and structure
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Back     alignment and structure
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Back     alignment and structure
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A Back     alignment and structure
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Back     alignment and structure
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Back     alignment and structure
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A Back     alignment and structure
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Back     alignment and structure
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Back     alignment and structure
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group} Back     alignment and structure
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ... Back     alignment and structure
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Back     alignment and structure
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia} Back     alignment and structure
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 828
d2vv5a167 b.38.1.3 (A:113-179) Mechanosensitive channel prot 4e-14
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 647 FEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGN 706
             A + L +  PF  G+  ++ GV   V  + I ST     D + I+ PN  +    I N
Sbjct: 6   LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIIN 65

Query: 707 Y 707
           +
Sbjct: 66  F 66

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query828
d2vv5a167 Mechanosensitive channel protein MscS (YggB), midd 99.69
d2vv5a2101 Mechanosensitive channel protein MscS (YggB), C-te 99.21
d2vv5a386 Mechanosensitive channel protein MscS (YggB), tran 97.63
d1tiza_67 Calmodulin-related protein T21P5.17 {Thale cress ( 95.56
d2hf5a133 Troponin C {Human (Homo sapiens), cardiac isoform 94.25
d1c7va_68 Calcium vector protein {Amphioxus (Branchiostoma l 93.44
d1g8ia_187 Frequenin (neuronal calcium sensor 1) {Human (Homo 93.13
d1fpwa_190 Frequenin (neuronal calcium sensor 1) {Baker's yea 92.17
d2opoa181 Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta 92.16
d2pq3a173 Calmodulin {Rattus norvegicus [TaxId: 10116]} 91.81
d1oqpa_77 Caltractin (centrin 2) {Green algae (Chlamydomonas 91.71
d1jfja_134 EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 91.63
d2scpa_174 Sarcoplasmic calcium-binding protein {Sandworm (Ne 91.6
d2sasa_185 Sarcoplasmic calcium-binding protein {Amphioxus (B 91.55
d1xo5a_180 Calcium- and integrin-binding protein, CIB {Human 91.44
d1pvaa_109 Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} 91.16
d1nyaa_176 Calerythrin {Saccharopolyspora erythraea [TaxId: 1 90.81
d1rroa_108 Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116 90.62
d1fi5a_81 Troponin C {Chicken (Gallus gallus), cardiac isofo 90.61
d1avsa_81 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 90.43
d1jc2a_75 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 90.4
d1qv0a_189 Calcium-regulated photoprotein {Hydrozoa (Obelia l 90.13
d5pala_109 Parvalbumin {Leopard shark (Triakis semifasciata) 89.69
d1fw4a_65 Calmodulin {Cow (Bos taurus) [TaxId: 9913]} 89.44
d1rwya_109 Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} 88.91
d1dtla_156 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 88.79
d1bjfa_181 Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} 88.71
d1uhka1187 Calcium-regulated photoprotein {Jellyfish (Aequore 88.59
d1c07a_95 Eps15 {Human (Homo sapiens) [TaxId: 9606]} 88.38
d1f54a_77 Calmodulin {Baker's yeast (Saccharomyces cerevisia 88.17
d1fi6a_92 Reps1 {Mouse (Mus musculus) [TaxId: 10090]} 87.43
d1exra_146 Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI 87.41
d2pvba_107 Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} 86.94
d1s6ca_178 Kchip1, Kv4 potassium channel-interacting protein 86.92
d1wrka182 Troponin C {Human (Homo sapiens), cardiac isoform 86.75
d2zfda1183 Calcineurin B-like protein 2 {Thale cress (Arabido 86.52
d1m45a_146 Myosin Light Chain Mlc1p {Baker's yeast (Saccharom 86.32
d1lkja_146 Calmodulin {Baker's yeast (Saccharomyces cerevisia 86.16
d1omra_201 Recoverin {Cow (Bos taurus) [TaxId: 9913]} 86.15
d3c1va193 Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta 85.86
d1qjta_99 Eps15 {Mouse (Mus musculus) [TaxId: 10090]} 85.85
d2fcea161 Calmodulin {Cow (Bos taurus) [TaxId: 9913]} 85.43
d1snla_99 Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax 85.26
d1jbaa_189 Guanylate cyclase activating protein 2, GCAP-2 {Co 85.23
d1g8ia_187 Frequenin (neuronal calcium sensor 1) {Human (Homo 85.14
d1topa_162 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 84.72
d2obha1141 Calmodulin {Human (Homo sapiens) [TaxId: 9606]} 84.62
d1jfja_134 EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 84.54
d1a4pa_92 Calcyclin (S100) {Human (Homo sapiens), P11 s100a1 84.14
d1ksoa_93 Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta 83.94
d1yuta198 Calcyclin (S100) {Human (Homo sapiens), s100a13 [T 83.85
d1auib_165 Calcineurin regulatory subunit (B-chain) {Human (H 82.63
d1omra_201 Recoverin {Cow (Bos taurus) [TaxId: 9913]} 82.28
d1bjfa_181 Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} 82.24
d1iq3a_110 Pob1 {Human (Homo sapiens) [TaxId: 9606]} 81.3
d1qx2a_76 Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]} 81.13
d2jxca195 Eps15 {Human (Homo sapiens) [TaxId: 9606]} 80.35
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=8.8e-18  Score=140.73  Aligned_cols=66  Identities=26%  Similarity=0.448  Sum_probs=63.4

Q ss_pred             hhhhhHhhhhhhhhcCCccCCCEEEECCeEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeee
Q 003345          642 TCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYY  708 (828)
Q Consensus       642 t~kn~f~SgIfIfv~hPFdVGDrV~IdG~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~S  708 (828)
                      +++| +.||++|++++||++||||+|+|..|+|++|+|++|++++.||+.++|||+.+.+++|.|||
T Consensus         2 tlsN-~~sGi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           2 SLSN-LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHH-HHHHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             cHHH-HHHHhhheeeCCccCCCEEEECCEEEEEEEEeceEEEEEccCCCEEEEECHHHcCCccEECc
Confidence            5789 55999999999999999999999999999999999999999999999999999999999986
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Back     information, alignment and structure
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Back     information, alignment and structure
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Back     information, alignment and structure
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]} Back     information, alignment and structure
>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]} Back     information, alignment and structure
>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Back     information, alignment and structure
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Back     information, alignment and structure
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]} Back     information, alignment and structure
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Back     information, alignment and structure
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]} Back     information, alignment and structure
>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Back     information, alignment and structure
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]} Back     information, alignment and structure
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]} Back     information, alignment and structure
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Back     information, alignment and structure
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Back     information, alignment and structure
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]} Back     information, alignment and structure
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]} Back     information, alignment and structure
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]} Back     information, alignment and structure
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]} Back     information, alignment and structure
>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Back     information, alignment and structure
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure