Citrus Sinensis ID: 003512

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810----
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPKTTAVDSTSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSLKDSISDGFGGLNLNVPPESTRSNGAEIIDVNVRPIVDGGFQEPSNSFSVKEPAKPWVEQPKKEQEMNVPLNDSLLVGHGGASASAPPPPLPRSEATSTVLYPIIDLAESEADETSHPAVSFTGLPTSSEEIRSDKDAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTGEKA
ccccEEEEEEEccEEEEEEEcccccccccccHHHHHHHHHHHHccccccccEEEEEcccccEEEEcccccHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHcccHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccEEccccccccccHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEEEEccccccccccEEEEEccccccccccEEEcccccccccccEEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHccccc
ccccEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHHcccccccEEEEEEcccccEEEEcccHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcEEEcccccEEEEccEEEEEccccccHHHHHcccccccccEEEEccccEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEcccccEEEEEEEEEcccccccccccEEEEEEcccccccccEEEEEcccccccccEEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHccccHHHcHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHccc
MESTMVIKVKYGDTLRRFnarvdenekldldIDGLRAKIKSLfnfphdsdltltyvdedgdivtlvddddlCDVMRQRLKFLRIDVhlnndkfgkayarssgsstplrspriqhplpdidsKISEILKSVPEPLREAISKLSTDVaskaastspmIADLVGCFskmglshvnvvpqsqygaessgkaeASENLMAhsvsndpnvskddglrevlpktnlkevfpktslkevlpkttavdstsksskdvdigIAARGVGVLLSSvdlnlppvdsapsgstmsiappasnitagddrmdanensvhqttsvpmstssvdpmwpsdvnqprtadlggnlstncpfsgipvanesagssrhprrghfkrgfnrDALMGMFhkgvrcdgcgvhpitgprfkskvkddydLCSICFAAmgseadyiridrpvhyrhprpfrglydhrqnfwlgtpgpdtqhvgalgaphilrdrgikpgrsrldscfildvnvldgtmmapstpftkIWRMRntgnlawprgsqlvwiggdkfsdgvsveievpadgvpvegeidiavdftapelpgryisywrmsspsgvkfgQRVWVLIQVdpslkdsisdgfgglnlnvppestrsngaeiidvnvrpivdggfqepsnsfsvkepakpwveqpkkeqemnvplndsllvghggasasapppplprseatstvlypiidlaeseadetshpavsftglptsseeirsdKDAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVddlcgvsewDPILEELQemgfhdeeTNKRLLKKNNGSIKGVVMDLLTGEKA
mestmvikvkygdtlrrfnarvdenekldldIDGLRAKIKSLfnfphdsdltltyvdedGDIVTLVDDDDLCDVMRQRLKFlridvhlnndkfgkayarssgsstplrspriqhplpdidsKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSvsndpnvskddglrevlpktnlkevfpktslkevlpkttavdstsksskdvdiGIAARGVGVLLSSVDLNLPPVDsapsgstmsiapPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVAnesagssrhprrgHFKRGFNRDALMGMFHKGVRCDGCGVHPITgprfkskvkdDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSLKDSISDGFGGLNLNVPPESTRSNGAEIIDVNVRPIVDGGFQEpsnsfsvkepaKPWVEQPKKEQEMNVPLNDSLLVGHGGASASAPPPPLPRSEATSTVLYPIIDLAeseadetshpavsftglptsseeirsdKDAVEQTLLREleemgfkqvDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGFHDEETNkrllkknngsikgvvmdlltgeka
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVdedgdivtlvddddlcdvMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPkttavdstsksskdvdIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSLKDSISDGFGGLNLNVPPESTRSNGAEIIDVNVRPIVDGGFQEPSNSFSVKEPAKPWVEQPKKEQEMNVPLNDSLLVGHGGasasapppplprseatsTVLYPIIDLAESEADETSHPAVSFTGLPTSSEEIRSDKDAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTGEKA
*****VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGK***********************************************************MIADLVGCFSKMGLSHVNVV*************************************************************************VDIGIAARGVGVLLSSVDL**************************************************************************************************RGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSLKDSISDGFGGLNL************EIIDVNVRPIVD*************************************************************VLYPIIDL***************************************LEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGF*******************VV*********
*ESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI***************************************************************************************************************************************************************************************************************************************************RTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV**************************************************************************************************************************************************************DLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTGE**
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAY***********SPRIQHPLPDIDSKISEILKSVPEPLREAISKL**********TSPMIADLVGCFSKMGLSHVNVVPQ*************SENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVL**************DVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANE****************DPMWPSDVNQPRTADLGGNLSTNCPFSGIPVA**********RRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSLKDSISDGFGGLNLNVPPESTRSNGAEIIDVNVRPIVDGGFQEPSNSFSVKEPAKPWVEQPKKEQEMNVPLNDSLLVGH***************EATSTVLYPIIDLAES*********VSFTGLPTSSEEIRSDKDAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTGEKA
**STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNN**********************QHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMG*******************************************************************************************VLL***DLNLPPVD****************************************TSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRP*********************************DRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPS***************************************************************************************************************************************KDAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTGE**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPKTTAVDSTSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSLKDSISDGFGGLNLNVPPESTRSNGAEIIDVNVRPIVDGGFQEPSNSFSVKEPAKPWVEQPKKEQEMNVPLNDSLLVGHGGASASAPPPPLPRSEATSTVLYPIIDLAESEADETSHPAVSFTGLPTSSEEIRSDKDAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTGEKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query814 2.2.26 [Sep-21-2011]
Q5RC94 894 Next to BRCA1 gene 1 prot yes no 0.227 0.206 0.292 7e-16
Q5BL31283 Uncharacterized protein C yes no 0.127 0.367 0.361 2e-14
Q14596 966 Next to BRCA1 gene 1 prot yes no 0.132 0.111 0.391 3e-14
P97432 988 Next to BRCA1 gene 1 prot yes no 0.132 0.109 0.391 4e-14
Q501R9 983 Next to BRCA1 gene 1 prot yes no 0.132 0.109 0.391 9e-14
Q5F3N9291 Uncharacterized protein C no no 0.127 0.357 0.351 7e-13
Q9H6K1298 Uncharacterized protein C no no 0.127 0.348 0.324 4e-12
Q3TT38291 Uncharacterized protein C no no 0.127 0.357 0.324 4e-12
Q9P792397 ZZ-type zinc finger-conta yes no 0.214 0.440 0.237 6e-11
O95714 4834 E3 ubiquitin-protein liga no no 0.083 0.014 0.357 1e-06
>sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1 Back     alignment and function desciption
 Score = 86.7 bits (213), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 44/229 (19%)

Query: 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-MGSEADYI--RIDRPV------ 426
           F   + C+ C    I G R++  +   Y++C  C A   G + +++  ++ RPV      
Sbjct: 211 FSWHIACNNCQRR-IVGVRYQCSLCPSYNICEDCEAGPYGHDTNHVLLKLRRPVVGSSEP 269

Query: 427 ----HYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFI 482
                Y  PR    L   R      TP   T                       L + F+
Sbjct: 270 FCHSKYSTPRLPAALEQVRLPLQPCTPVMPT-----------------------LSAAFV 306

Query: 483 LDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-KFSDGVSVEIEVPADG 541
            D N+ DGT + P T F K WRM+NTGN+ W   ++L ++ G+   +     ++ VP   
Sbjct: 307 -DENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDVLVPCLK 365

Query: 542 VPVEGEID-IAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDP 589
               G +  ++V+F AP L G Y S+WR+S   G +FG RVW  I VDP
Sbjct: 366 A---GHVGVVSVEFIAPALEGTYTSHWRLSH-KGQQFGPRVWCSIIVDP 410
Acts probably as a receptor for selective autophagosomal degradation of ubiquitinated targets.
Pongo abelii (taxid: 9601)
>sp|Q5BL31|CF106_DANRE Uncharacterized protein C6orf106 homolog OS=Danio rerio GN=zgc:101577 PE=2 SV=1 Back     alignment and function description
>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=3 Back     alignment and function description
>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=1 SV=1 Back     alignment and function description
>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus GN=Nbr1 PE=1 SV=1 Back     alignment and function description
>sp|Q5F3N9|CF106_CHICK Uncharacterized protein C6orf106 homolog OS=Gallus gallus GN=RCJMB04_11e11 PE=2 SV=1 Back     alignment and function description
>sp|Q9H6K1|CF106_HUMAN Uncharacterized protein C6orf106 OS=Homo sapiens GN=C6orf106 PE=1 SV=2 Back     alignment and function description
>sp|Q3TT38|CF106_MOUSE Uncharacterized protein C6orf106 homolog OS=Mus musculus GN=D17Wsu92e PE=2 SV=2 Back     alignment and function description
>sp|Q9P792|YN8B_SCHPO ZZ-type zinc finger-containing protein P35G2.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP35G2.11c PE=4 SV=1 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query814
255540511754 zinc ion binding protein, putative [Rici 0.914 0.986 0.536 0.0
359491205836 PREDICTED: uncharacterized protein LOC10 0.952 0.927 0.483 0.0
297733703827 unnamed protein product [Vitis vinifera] 0.945 0.931 0.475 0.0
449469725789 PREDICTED: uncharacterized protein LOC10 0.914 0.942 0.415 1e-158
224133682673 predicted protein [Populus trichocarpa] 0.512 0.619 0.602 1e-146
337732515843 JOKA2 [Nicotiana tabacum] 0.552 0.533 0.542 1e-138
15233935704 ubiquitin-associated (UBA) zinc-finger a 0.568 0.657 0.514 1e-130
297803642709 ubiquitin-associated /TS-N domain-contai 0.568 0.653 0.502 1e-126
356564960847 PREDICTED: uncharacterized protein LOC10 0.732 0.703 0.436 1e-126
78068099870 ubiquitin-associated protein [Triticum a 0.931 0.871 0.379 1e-122
>gi|255540511|ref|XP_002511320.1| zinc ion binding protein, putative [Ricinus communis] gi|223550435|gb|EEF51922.1| zinc ion binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/824 (53%), Positives = 560/824 (67%), Gaps = 80/824 (9%)

Query: 1   MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG 60
           MEST+VIK K GDTLRRFNA ++EN  LDLD+ GLRAKI  LFNFP D+D  LTYVDEDG
Sbjct: 1   MESTLVIKAKCGDTLRRFNAPINENGLLDLDLSGLRAKILGLFNFPSDADFILTYVDEDG 60

Query: 61  DIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSS-GSSTPLRSPRIQHPLPDI 119
           D+VTLVDDDDL DVM Q LKFLR+DV L NDKF  + A+SS G+ST +RSPR Q PLP++
Sbjct: 61  DVVTLVDDDDLVDVMNQSLKFLRVDVQLKNDKFATSNAKSSCGTSTHMRSPRGQSPLPNL 120

Query: 120 DSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQY 179
           +  +++ILKSVPEPLREA+SKLS D+ASKAA ++ ++ADLV C SKMG S +N   Q Q 
Sbjct: 121 NGGVADILKSVPEPLREALSKLSLDLASKAACSNSVVADLVDCVSKMGQSFLNTAQQPQT 180

Query: 180 GAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPKTTAVD 239
           GA +S      EN ++ +    PN +     RE+                          
Sbjct: 181 GASASTYFGTVENPVSSAGPTMPNATNSGTSREL-------------------------- 214

Query: 240 STSKSSKDVDIGIAARGVGVLLSSVDLNL-PPVDSAPSGSTMSIAPPASNITAGDDRMDA 298
                ++DV + I       + + VDLNL PP DS  SG   +          GD+R   
Sbjct: 215 RAENVTRDVGMPITP-----VPAPVDLNLDPPCDSFLSGCATN---NFKQTVDGDNR-KK 265

Query: 299 NENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANE-SAGSSRH 357
           N+       S+P+   ++       ++   +    GN    CPFSG+PVAN+ SA  S  
Sbjct: 266 NKKQNFGRPSMPVKIGAL-------LDTSASVRPFGN---ECPFSGMPVANDLSAPPSVL 315

Query: 358 PRRGHFKRGFNR-DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSE 416
           PR   FK+   R D ++GMFH+GV+CDGCGVHPITG R+KSKV++DYDLCSICF+ MG+E
Sbjct: 316 PRVTPFKKSSGRNDGVVGMFHRGVQCDGCGVHPITGLRYKSKVREDYDLCSICFSEMGNE 375

Query: 417 ADYIRIDRPVHYRHPRPFRGLYDH---RQNFWLGTPGPDTQHVGALGAPHILRDRGIKPG 473
           ADYI I RPV YR P  F+GL D    R   ++  P              I++  G KP 
Sbjct: 376 ADYIMIARPVSYRRPHSFKGLQDPVYIRPMIYVSLPT------------DIMKPFGPKPL 423

Query: 474 RSRL-DSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVS 532
             +L DS F++DVNVLDGT+MAPSTPFTKIWR+RN+G +AWP+GS+LVW  G+KFS   S
Sbjct: 424 WGKLLDSHFVMDVNVLDGTVMAPSTPFTKIWRLRNSGTVAWPQGSRLVWTEGNKFSCAYS 483

Query: 533 VEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSLK 592
            E+E+PADG+PV+GEIDIAVDF +P+LPGRY+S W+M+SPSG KFGQRVWVLI VD S K
Sbjct: 484 AELELPADGLPVDGEIDIAVDFISPDLPGRYLSCWKMASPSGTKFGQRVWVLINVDASTK 543

Query: 593 DSISDGFGGLNLNVPPESTRSNGAEIIDVNVRPIVDGGFQEPSNSFSVKEPAKPW--VEQ 650
            S+ DG  GLNLN PP+ + S   ++IDVNV+P+ D G  EPS+S S   P KP   VE+
Sbjct: 544 YSVPDGVRGLNLNFPPDCSVSKCRDVIDVNVQPVTDSGIMEPSSS-SSAVPVKPMVEVER 602

Query: 651 PKKEQEMNVPLNDSLLVGHGGASASAPPPPLPRSEATSTVLYPIIDLAESEADETSHPAV 710
           P+K+QE+N+P+N+SLLVG+G ++ ++        +A+ +VLYPI+DL+ +   +T  PAV
Sbjct: 603 PEKDQELNLPINNSLLVGNGVSNPAS-------RQASPSVLYPIVDLSGAGPSKTV-PAV 654

Query: 711 SFTGLPTSSEEIRSDKDAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVS 770
               +PTS EE   +KD  E++LL+ELEEMGFKQVDLNKEILR+N Y+LEQSVDDLCGVS
Sbjct: 655 D---VPTSPEET-DEKDVFEESLLKELEEMGFKQVDLNKEILRINAYNLEQSVDDLCGVS 710

Query: 771 EWDPILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTGEKA 814
           EWDPILEELQEMGF +EE N++LLKKNNGSIKGVVMDLLTGEKA
Sbjct: 711 EWDPILEELQEMGFRNEEMNRKLLKKNNGSIKGVVMDLLTGEKA 754

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491205|ref|XP_002277480.2| PREDICTED: uncharacterized protein LOC100253588 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733703|emb|CBI14950.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449469725|ref|XP_004152569.1| PREDICTED: uncharacterized protein LOC101205935 [Cucumis sativus] gi|449487835|ref|XP_004157824.1| PREDICTED: uncharacterized LOC101205935 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224133682|ref|XP_002321635.1| predicted protein [Populus trichocarpa] gi|222868631|gb|EEF05762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|337732515|gb|AEI71779.1| JOKA2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|15233935|ref|NP_194200.1| ubiquitin-associated (UBA) zinc-finger and PB1 domain-containing protein [Arabidopsis thaliana] gi|4220521|emb|CAA22994.1| putative protein [Arabidopsis thaliana] gi|7269320|emb|CAB79379.1| putative protein [Arabidopsis thaliana] gi|17065502|gb|AAL32905.1| putative protein [Arabidopsis thaliana] gi|22136162|gb|AAM91159.1| putative protein [Arabidopsis thaliana] gi|22655264|gb|AAM98222.1| unknown protein [Arabidopsis thaliana] gi|30725524|gb|AAP37784.1| At4g24690 [Arabidopsis thaliana] gi|110735110|gb|ABG89125.1| p62-like [synthetic construct] gi|332659543|gb|AEE84943.1| ubiquitin-associated (UBA) zinc-finger and PB1 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803642|ref|XP_002869705.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315541|gb|EFH45964.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356564960|ref|XP_003550713.1| PREDICTED: uncharacterized protein LOC100816395 [Glycine max] Back     alignment and taxonomy information
>gi|78068099|gb|ABB18390.1| ubiquitin-associated protein [Triticum aestivum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query814
TAIR|locus:2121899704 NBR1 "next to BRCA1 gene 1" [A 0.633 0.732 0.479 1.7e-152
DICTYBASE|DDB_G0270098646 sqstm1 "sequestosome-1" [Dicty 0.157 0.198 0.367 1.1e-21
UNIPROTKB|E1C6F8 941 E1C6F8 "Uncharacterized protei 0.219 0.190 0.302 8.8e-18
ZFIN|ZDB-GENE-030131-9112 1014 nbr1 "neighbor of brca1 gene 1 0.180 0.144 0.365 2.9e-17
UNIPROTKB|I3LV11 986 NBR1 "Uncharacterized protein" 0.230 0.190 0.306 1.7e-16
UNIPROTKB|Q5RC94 894 NBR1 "Next to BRCA1 gene 1 pro 0.235 0.214 0.313 4.4e-16
UNIPROTKB|J3KPL5 966 NBR1 "Next to BRCA1 gene 1 pro 0.133 0.112 0.394 5.6e-16
UNIPROTKB|Q14596 966 NBR1 "Next to BRCA1 gene 1 pro 0.133 0.112 0.394 5.6e-16
UNIPROTKB|J9NUB8 954 NBR1 "Uncharacterized protein" 0.140 0.119 0.386 1.4e-15
UNIPROTKB|F1LND4 747 LOC498369 "Protein LOC498369" 0.138 0.151 0.391 1.5e-15
TAIR|locus:2121899 NBR1 "next to BRCA1 gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1205 (429.2 bits), Expect = 1.7e-152, Sum P(2) = 1.7e-152
 Identities = 265/553 (47%), Positives = 352/553 (63%)

Query:   269 PPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSS-VDPMWPSDVNQP 327
             P      SG+++S   P+    AG  + D +E +  QT   P++ +        +  + P
Sbjct:   179 PVTKPGSSGASLSRDVPS----AGGKK-DISERT--QTGRKPVNLNEPTGAHSKTSGHVP 231

Query:   328 RTADLGGNLSTNCPFSGIPVANESAGS----SRHPRRG-HFKRGFNRD--ALMGMFHKGV 380
              ++ LG N +  CPFSG  + N S  +    ++HPRR  H K+  N D    +G+FHKG+
Sbjct:   232 NSSGLGANFN-ECPFSGSTM-NYSCPNPVNLNKHPRRVCHSKKSTNGDYWTSLGVFHKGI 289

Query:   381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDH 440
             RCDGCGV PITGPRFKSKVK+DYDLC+IC++ MG+E DY R+D+PV  +H  PFRG +  
Sbjct:   290 RCDGCGVLPITGPRFKSKVKEDYDLCTICYSVMGNEGDYTRMDKPVSVQHLHPFRGPFTQ 349

Query:   441 RQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFT 500
               N WL  P P   + G  GAP       ++  R +LDS F+LDVNV+DGT++APS PFT
Sbjct:   350 FPNPWLSHPVPRATN-G--GAP-------LRCTRPKLDSRFVLDVNVIDGTVVAPSAPFT 399

Query:   501 KIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELP 560
             KIW+MRN+G+L WP+G+Q+VWIGGD+F + +SV++++P +GVP+  E+D+ VDF APELP
Sbjct:   400 KIWKMRNSGSLVWPQGTQIVWIGGDRFCNSLSVDLQIPKEGVPIYSELDVKVDFVAPELP 459

Query:   561 GRYISYWRMSSPSGVKFGQRVWVLIQVDPSLKDSISDGFGGLNLNVPPESTRSNGAEIID 620
             GRYISYWRM++  G KFGQRVWVLI VD SLK+S+ + F GLNLN  P    +  +E + 
Sbjct:   460 GRYISYWRMATSDGAKFGQRVWVLIHVDASLKNSVVNEFHGLNLNASPSLDENFPSEFLG 519

Query:   621 VNVRPIVDGGFQEPSNSFSVKEPAKPWVEQPKKEQEMNVPLNDSLLVGHGGXXXXXXXXX 680
                  I++    +P +S SV        +   +  E      ++LLVG            
Sbjct:   520 -----IMNYESAQPGSS-SVNPGTVKGTDLEGEVGETQAVEKENLLVGEAHPAIPHGHSP 573

Query:   681 XXXXXXXXTVLYPIIDLAESEADETSHPAVSFTGLPTSSEEIRSDKDAVEQTLLRELEEM 740
                      V +P +   E  +  +S        +P   E+I  +K+ VE T+L+ELEEM
Sbjct:   574 SSSSSSFNMVDFPSMPAVEVLSGGSSSTTKDVP-VPLQ-EDI--EKNDVEITMLKELEEM 629

Query:   741 GFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGFHDEETNKRLLKKNNGS 800
             GFK++DLNKEILR NEY+LEQSVD LCGVSEWDPILEELQEMGF D+ TNKRLLKKNNGS
Sbjct:   630 GFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRLLKKNNGS 689

Query:   801 IKGVVMDLLTGEK 813
             IKGVVMDLLTGEK
Sbjct:   690 IKGVVMDLLTGEK 702
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005773 "vacuole" evidence=IDA
GO:0043130 "ubiquitin binding" evidence=IDA
GO:0051258 "protein polymerization" evidence=IDA
DICTYBASE|DDB_G0270098 sqstm1 "sequestosome-1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6F8 E1C6F8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9112 nbr1 "neighbor of brca1 gene 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LV11 NBR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RC94 NBR1 "Next to BRCA1 gene 1 protein" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|J3KPL5 NBR1 "Next to BRCA1 gene 1 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q14596 NBR1 "Next to BRCA1 gene 1 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUB8 NBR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LND4 LOC498369 "Protein LOC498369" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.1742.1
hypothetical protein (673 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query814
cd0639891 cd06398, PB1_Joka2, The PB1 domain is present in t 9e-33
cd0234243 cd02342, ZZ_UBA_plant, Zinc finger, ZZ type 4e-21
cd0599281 cd05992, PB1, The PB1 domain is a modular domain m 6e-15
cd0224946 cd02249, ZZ, Zinc finger, ZZ type 2e-11
pfam0056484 pfam00564, PB1, PB1 domain 3e-11
smart0066681 smart00666, PB1, PB1 domain 8e-11
cd0234445 cd02344, ZZ_HERC2, Zinc finger, ZZ type 8e-10
cd0233849 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type 3e-09
cd0234043 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type 1e-08
cd0233945 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type 3e-08
pfam0056946 pfam00569, ZZ, Zinc finger, ZZ type 9e-08
smart0029144 smart00291, ZnF_ZZ, Zinc-binding domain, present i 2e-07
cd0640181 cd06401, PB1_TFG, The PB1 domain found in TFG prot 7e-05
cd0234148 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type 2e-04
pfam0062737 pfam00627, UBA, UBA/TS-N domain 5e-04
cd0233449 cd02334, ZZ_dystrophin, Zinc finger, ZZ type 9e-04
cd0233549 cd02335, ZZ_ADA2, Zinc finger, ZZ type 0.001
cd0639782 cd06397, PB1_UP1, Uncharacterized protein 1 0.003
cd0640986 cd06409, PB1_MUG70, The MUG70 protein is a product 0.004
>gnl|CDD|99720 cd06398, PB1_Joka2, The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information 
 Score =  121 bits (305), Expect = 9e-33
 Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 6/92 (6%)

Query: 5  MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT 64
          +V+KVKYG TLRRF   V EN +LDL++DGLR K++ LF+   D+DL+LTY DEDGD+VT
Sbjct: 1  LVVKVKYGGTLRRFTFPVAEN-QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVT 59

Query: 65 LVDDDDLCDVMRQ-----RLKFLRIDVHLNND 91
          LVDD+DL D ++      RL  LRIDV ++ D
Sbjct: 60 LVDDNDLTDAIQYFCSGSRLNPLRIDVTVDYD 91

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 91
>gnl|CDD|239082 cd02342, ZZ_UBA_plant, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|215996 pfam00564, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|214770 smart00666, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|239084 cd02344, ZZ_HERC2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>gnl|CDD|99722 cd06401, PB1_TFG, The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>gnl|CDD|239081 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain Back     alignment and domain information
>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|99719 cd06397, PB1_UP1, Uncharacterized protein 1 Back     alignment and domain information
>gnl|CDD|99730 cd06409, PB1_MUG70, The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 814
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 99.84
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 99.75
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 99.7
KOG4351244 consensus Uncharacterized conserved protein [Funct 99.58
KOG4351244 consensus Uncharacterized conserved protein [Funct 99.46
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 99.42
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 99.4
cd0234243 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre 99.39
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 99.38
KOG4582278 consensus Uncharacterized conserved protein, conta 99.38
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 99.36
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 99.33
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 99.32
cd0599281 PB1 The PB1 domain is a modular domain mediating s 99.32
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 99.31
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 99.21
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 99.18
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 99.17
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 99.16
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 99.15
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 99.1
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 99.08
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 99.03
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 98.92
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 98.88
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 98.87
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 98.84
KOG1280381 consensus Uncharacterized conserved protein contai 98.84
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 98.83
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 98.78
KOG4286966 consensus Dystrophin-like protein [Cell motility; 98.3
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 97.99
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 97.8
KOG4301434 consensus Beta-dystrobrevin [Cytoskeleton] 97.71
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 97.41
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 97.3
cd0233645 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present 96.68
cd0641097 PB1_UP2 Uncharacterized protein 2. The PB1 domain 96.67
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 96.46
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 96.42
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 96.41
KOG3606358 consensus Cell polarity protein PAR6 [Signal trans 96.19
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 95.83
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 95.1
cd0639992 PB1_P40 The PB1 domain is essential part of the p4 95.08
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 94.69
KOG0695593 consensus Serine/threonine protein kinase [Signal 94.62
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 93.98
KOG2561568 consensus Adaptor protein NUB1, contains UBA domai 93.3
PF14874102 PapD-like: Flagellar-associated PapD-like 92.69
cd0639591 PB1_Map2k5 PB1 domain is essential part of the mit 91.8
cd0641178 PB1_p51 The PB1 domain is present in the p51 prote 90.76
PF0764930 C1_3: C1-like domain; InterPro: IPR011424 This sho 90.27
KOG0010493 consensus Ubiquitin-like protein [Posttranslationa 89.58
PF14646426 MYCBPAP: MYCBP-associated protein family 89.07
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 88.22
KOG0010493 consensus Ubiquitin-like protein [Posttranslationa 86.9
smart0054643 CUE Domain that may be involved in binding ubiquit 86.43
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 84.95
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 84.81
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 84.66
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 84.6
KOG2561 568 consensus Adaptor protein NUB1, contains UBA domai 81.51
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 80.02
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information 
Probab=99.84  E-value=1.5e-20  Score=169.61  Aligned_cols=86  Identities=60%  Similarity=0.989  Sum_probs=80.2

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCccccHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh-----cC
Q 003512            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----RL   79 (814)
Q Consensus         5 ~viKvk~gd~lRRf~i~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~VTL~Dd~DL~~a~~q-----~l   79 (814)
                      ++|||+|||++|||++++++| +.|+++..|++||++.|+|+++.+|+|+|+|+|||+|+|.+|+||.+|+..     ++
T Consensus         1 l~vKv~y~~~~rRf~l~~~~~-~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~   79 (91)
T cd06398           1 LVVKVKYGGTLRRFTFPVAEN-QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRL   79 (91)
T ss_pred             CEEEEEeCCEEEEEEeccccc-cCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCC
Confidence            689999999999999999865 889999999999999999999999999999999999999999999999755     48


Q ss_pred             ceEEEEEEecCC
Q 003512           80 KFLRIDVHLNND   91 (814)
Q Consensus        80 ~~LritV~l~~~   91 (814)
                      ++|||+|+++.+
T Consensus        80 ~~lrl~v~~~~~   91 (91)
T cd06398          80 NPLRIDVTVDYD   91 (91)
T ss_pred             ceEEEEEEEecC
Confidence            999999998753

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>KOG4351 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4351 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>cd02336 ZZ_RSC8 Zinc finger, ZZ type Back     alignment and domain information
>cd06410 PB1_UP2 Uncharacterized protein 2 Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms] Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development Back     alignment and domain information
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein Back     alignment and domain information
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines Back     alignment and domain information
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query814
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 1e-15
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 6e-14
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 6e-07
2cwb_A108 Chimera of immunoglobulin G binding protein G and 4e-06
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 7e-06
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 7e-06
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 1e-05
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 2e-05
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 2e-05
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 3e-05
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 3e-05
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 3e-05
1pqs_A77 Cell division control protein 24; alpha and beta p 1e-04
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 3e-04
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 4e-04
2dna_A67 Unnamed protein product; ubiquitin associated doma 7e-04
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98 Back     alignment and structure
 Score = 72.0 bits (176), Expect = 1e-15
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEA-DYIRIDRPVHYRHPRPFR 435
           H G+ C+ C   PI G  +K     +Y LC  CF +    +  +   ++          R
Sbjct: 29  HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRNQKWRSLEKR 88
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Length = 89 Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Length = 108 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Length = 46 Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Length = 52 Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52 Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Length = 58 Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Length = 54 Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Length = 54 Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Length = 53 Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Length = 74 Back     alignment and structure
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A Length = 77 Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Length = 98 Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Length = 117 Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Length = 67 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 814
d2dipa185 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p 5e-14
d2fc7a169 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p 6e-11
d1ip9a_85 d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker' 1e-10
d2bkfa185 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NB 3e-08
d1tota152 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse 1e-06
d2cp8a141 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR 2e-06
d2cp8a141 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR 0.002
d2bwba144 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharom 4e-05
d2daha141 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) 5e-05
d2dnaa150 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {M 1e-04
d1veja161 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculu 6e-04
d1wmha_83 d.15.2.2 (A:) Protein kinase C, iota type {Human ( 0.002
d1wmhb_82 d.15.2.2 (B:) Partitioning defective-6 homolog alp 0.003
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (160), Expect = 5e-14
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRG 436
           H G+ C+ C   PI G  +K     +Y LC  CF +              H  H   FR 
Sbjct: 22  HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS------------YCHLSHTFTFRE 69

Query: 437 LYDHRQN 443
             + +  
Sbjct: 70  KRNQKWR 76
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 61 Back     information, alignment and structure
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query814
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 99.17
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 99.05
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 99.02
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 98.95
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 98.52
d1wmhb_82 Partitioning defective-6 homolog alpha, PAR-6 alph 97.91
d2cp8a141 Migration-inducing protein 19 NBR1 {Human (Homo sa 97.42
d1wmha_83 Protein kinase C, iota type {Human (Homo sapiens) 97.41
d2cp8a141 Migration-inducing protein 19 NBR1 {Human (Homo sa 97.22
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 96.57
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 96.51
d1pqsa_77 Cell division control protein 24, CDC24, C-termina 96.49
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 96.49
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 96.34
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 96.3
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 96.21
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 96.16
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 96.05
d1oeyj_105 Neutrophil cytosol factor 4 (p40phox component of 94.53
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 93.87
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 93.42
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 93.12
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 93.06
d2npta1105 Mitogen activated protein kinase kinase 5, Map2k5 92.94
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 90.79
d1v5na_89 Pdi-like hypothetical protein At1g60420 {Thale cre 88.51
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 87.96
d1oeya_82 Neutrophil cytosol factor 2 (p67phox component of 86.97
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 85.5
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 84.99
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 84.03
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 82.99
d1whca_64 UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta 82.02
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.2e-10  Score=89.64  Aligned_cols=80  Identities=18%  Similarity=0.376  Sum_probs=69.9

Q ss_pred             CCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCHHHHHH---HHH
Q ss_conf             98623999982981124550137887754558889999998718899996079975289996997285459999---982
Q 003512            1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV---MRQ   77 (814)
Q Consensus         1 m~~~~viKvk~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~lkY~DeDGD~VTL~Dd~DL~~a---~~q   77 (814)
                      ||-.+++||.|++++|||.++..    -...+..|+.+|+..|+|.   +|.|||.|+|+|+|+|..|.||.++   +..
T Consensus         1 mep~vtvKvtf~~dt~RF~ls~~----~~~~~~~L~~~i~~rf~l~---~~~lkY~Ddd~e~v~l~~d~dl~E~~~~a~~   73 (85)
T d2bkfa1           1 MEPQVTLNVTFKNEIQSFLVSDP----ENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK   73 (85)
T ss_dssp             CCCCEEEEEEETTEEEEEEESCG----GGCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEECCCEEEEEECCC----CCCCHHHHHHHHHHHCCCC---CCEEEEECCCCCEEEEECHHHHHHHHHHHHC
T ss_conf             99608999998784589996488----7776999999999866966---4138987599998998068889999999866


Q ss_pred             CCCEEEEEEE
Q ss_conf             1843899999
Q 003512           78 RLKFLRIDVH   87 (814)
Q Consensus        78 ~l~~LritV~   87 (814)
                      ..+.||+.|.
T Consensus        74 ~~~~irl~v~   83 (85)
T d2bkfa1          74 QGNQLQMQVH   83 (85)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEEE
T ss_conf             8988999996
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure