Citrus Sinensis ID: 003516

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810---
MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQELQNSKPHNQTSPPTKNRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNGRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRSLFLSVLRVKVEIISICV
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccEEcccEEEEccccccccccEEEEEEEEccccccccccccEEEEEEEEEEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcEEEEEEEccccEEEEEEEccccEEEccccHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEcccccccEEEEcccccccccccccccccccEEEEHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHcccEEcccccEEEEEccccccEEEcccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHHccccccEEcccccccccccccccEEEEEEEcccccccccccccEEEEEEEEcccccccEEEEEEEcccccHHHHccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHcc
ccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHcHHHcccccccccccccEEccccccccccEEEEEEEccccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEEccccccccccccccccEEEEccccccccccccccEEEEEccHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEEEccccccccccEcccccccccEEHHHHHHHHcccEEEcccccccEcccccccccccHHHHHHccHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEccccEEEEcccccEEEccccccEEEccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccEEEEEEEccccEEEEEEEEccccccccccHHHHHHEEEEEEEEEcccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHHEEEEEcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHHHcc
mpirqmkdsseQHLVIKTHLQntmnqsqkqpktaqngkgpphqelqnskphnqtspptknrgrrrgrggrksdqndvfmrpssrpctvahkpvnqvcdlvgsnangavgngrslcatemgfptsskslsfaprpgygqvgtKCIVKANHffaelpdkdlnqydvtitpevasRTVNRAIMAELVRLYKEsdlgmrlpaydgrkslytagelpfVWKEFKIKLVDeldgingpkrvREYKVVIKFAARANMHHLGQFlagkradapQEALQILDIVLRELstkrycpigrsffspsirtpqrlgdgLESWCGFYqsirptqmglsLNIDMasaafieplPVIEFVAQLLGKDvlsrtlsdsdRVKIKKALRGVKvevthrgtvrrkyrvsgltsqptrelvfpvddnstMKSVVEYFQEMYGFTiqhthlpclqvgnqkkanylpmeackivegqRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEArilpapwlkyhengkekdclpqvgqwnMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQvsgmefnpepvipihnarpDQVEKALKHVYhssmsktkgKELELLLAIlpdnngslygdLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAIscriplvsdiptiifgadvthpengedsspSIAAVVAsqdwpevtkYAGLVCAQAHRQELIQDLYktwhdpvrgtvsgGMIRDLLISFRKatgqkplrIIFYRSLFLSVLRVKVEIISICV
mpirqmkdsseqHLVIKTHLQNTMNQSQKQPKTAQNGKGPphqelqnskphnqtspptknrgrrrgrggrksdqndvfmrpssrpctvahKPVNQVCDLVGSNANGAVGNGRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFaelpdkdlnqYDVTItpevasrtvnrAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVdeldgingpkrvREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRycpigrsffspsirtpqRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVlsrtlsdsdrvkikkalrgvkvevthrgtvrrkyrvsgltsqptrelvfpvddnSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLkvtcqrprdreNDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPApwlkyhengkEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFrkatgqkplRIIFYRSLflsvlrvkVEIISICV
MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQELQNSKPHNQTSPPTKNrgrrrgrggrKSDQNDVFMRPSSRPCTVAHKPVNQVCDLvgsnangavgngRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRSLFLSVLRVKVEIISICV
**************************************************************************************TVAHKPVNQVCDLVGSNANGAVGNGRSLCATEM**********FAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHN*********LKHVY*********KELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVT***********IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRSLFLSVLRVKVEIISIC*
*****************************************************************************************************************************************QVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKL***************YKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPS*****RLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRY************LKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENG**SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRSLFLSVLRVKVEIISICV
***********QHLVIKTHLQN****************************************************NDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNGRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRSLFLSVLRVKVEIISICV
***********QHL***THLQ**********************************************************************************************************LSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRSLFLSVLRVKVEIISICV
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MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQELQNSKPHNQTSPPTKNRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNGRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRSLFLSVLRVKVEIISICV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query813 2.2.26 [Sep-21-2011]
Q9XGW1 988 Protein argonaute 10 OS=A yes no 0.964 0.793 0.821 0.0
Q69VD5 979 Protein argonaute PNH1 OS yes no 0.832 0.691 0.831 0.0
O04379 1048 Protein argonaute 1 OS=Ar no no 0.830 0.644 0.758 0.0
Q7XSA2 1118 Protein argonaute 1B OS=O yes no 0.846 0.615 0.733 0.0
Q6EU14 1082 Protein argonaute 1A OS=O yes no 0.846 0.635 0.722 0.0
Q6K972 1011 Protein argonaute 1C OS=O no no 0.831 0.668 0.723 0.0
Q5Z5B2 1038 Protein argonaute 1D OS=O no no 0.829 0.649 0.720 0.0
Q851R2 1058 Protein argonaute MEL1 OS no no 0.824 0.633 0.545 0.0
Q9SJK3 997 Protein argonaute 5 OS=Ar no no 0.813 0.662 0.533 0.0
Q7Y001 1049 Protein argonaute 12 OS=O no no 0.815 0.632 0.499 0.0
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function desciption
 Score = 1306 bits (3380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/805 (82%), Positives = 706/805 (87%), Gaps = 21/805 (2%)

Query: 1   MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQELQNSKPHNQTSPPTK- 59
           MPIRQMKDSSE HLVIKT      N     PKT QNGK PP      +     T   ++ 
Sbjct: 1   MPIRQMKDSSETHLVIKTQPLKHHN-----PKTVQNGKIPPPSPSPVTVTTPATVTQSQA 55

Query: 60  --------NRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNG 111
                   NR RRR RGGRKSDQ DV MRPSSRP             +  + A   V   
Sbjct: 56  SSPSPPSKNRSRRRNRGGRKSDQGDVCMRPSSRPRKPPPPSQTTSSAVSVATAGEIVAVN 115

Query: 112 RSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVA 171
             +   +MG     K+ +FAPRPG+G +GTKCIVKANHF A+LP KDLNQYDVTITPEV+
Sbjct: 116 HQM---QMGV---RKNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVS 169

Query: 172 SRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGI-N 230
           S++VNRAI+AELVRLYKESDLG RLPAYDGRKSLYTAGELPF WKEF +K+VDE DGI N
Sbjct: 170 SKSVNRAIIAELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIIN 229

Query: 231 GPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRS 290
           GPKR R YKV IKF ARANMHHLG+FLAGKRAD PQEA+QILDIVLRELS KR+CP+GRS
Sbjct: 230 GPKRERSYKVAIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRS 289

Query: 291 FFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 350
           FFSP I+TPQRLG+GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK
Sbjct: 290 FFSPDIKTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 349

Query: 351 DVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK 410
           DVLS+ LSDSDRVKIKK LRGVKVEVTHR  VRRKYRV+GLT+QPTREL+FPVD+N TMK
Sbjct: 350 DVLSKPLSDSDRVKIKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMK 409

Query: 411 SVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLK 470
           SV+EYFQEMYGFTIQHTHLPCLQVGNQKKA+YLPMEACKIVEGQRYTKRLNE+QITALLK
Sbjct: 410 SVIEYFQEMYGFTIQHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLK 469

Query: 471 VTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKE 530
           VTCQRPRDRENDIL+TVQ NAYDQD YAKEFG+ ISEKLASVEARILPAPWLKYHENGKE
Sbjct: 470 VTCQRPRDRENDILRTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKE 529

Query: 531 KDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNP 590
           KDCLPQVGQWNMMNKKMINGMTVSRWAC+NFSRSVQE+VARGFCNEL QMC+VSGMEFNP
Sbjct: 530 KDCLPQVGQWNMMNKKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNP 589

Query: 591 EPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDL 650
           EPVIPI++ARPDQVEKALKHVYH+SM+KTKGKELELLLAILPDNNGSLYGDLKRICET+L
Sbjct: 590 EPVIPIYSARPDQVEKALKHVYHTSMNKTKGKELELLLAILPDNNGSLYGDLKRICETEL 649

Query: 651 GIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGAD 710
           G+ISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVL+DAISCRIPLVSDIPTIIFGAD
Sbjct: 650 GLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGAD 709

Query: 711 VTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSG 770
           VTHPENGE+SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTW DPVRGTVSG
Sbjct: 710 VTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSG 769

Query: 771 GMIRDLLISFRKATGQKPLRIIFYR 795
           GMIRDLLISFRKATGQKPLRIIFYR
Sbjct: 770 GMIRDLLISFRKATGQKPLRIIFYR 794
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for reliable formation of primary and axillary shoot apical meristems. Specifies leaf adaxial identity by repressing the miR165 and miR166 microRNAs in the embryonic shoot apex, in the shoot apical meristem (SAM) and leaf. Represses the microRNA miR398 which targets CCS1 chaperone mRNAs for translational inhibition. Acts as a negative regulator of AGO1 protein level. Like AGO1, is required for stem cell function and organ polarity. Unlike AGO1, is not subjected to small RNA-mediated repression itself. Essential for multiple processes in development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query813
255552031 986 eukaryotic translation initiation factor 0.974 0.803 0.914 0.0
224102121 996 argonaute protein group [Populus trichoc 0.977 0.798 0.905 0.0
225432808 995 PREDICTED: protein argonaute 10-like [Vi 0.977 0.798 0.910 0.0
449432654 984 PREDICTED: protein argonaute 10-like [Cu 0.968 0.799 0.897 0.0
297737118 953 unnamed protein product [Vitis vinifera] 0.954 0.814 0.902 0.0
356575891 974 PREDICTED: protein argonaute 10-like [Gl 0.955 0.797 0.883 0.0
356535942 974 PREDICTED: protein argonaute 10-like [Gl 0.955 0.797 0.875 0.0
356501789 972 PREDICTED: protein argonaute 10-like [Gl 0.952 0.796 0.843 0.0
409127973 959 AGO10A splice variant 2 [Solanum lycoper 0.959 0.813 0.848 0.0
297795033 983 hypothetical protein ARALYDRAFT_917259 [ 0.953 0.788 0.817 0.0
>gi|255552031|ref|XP_002517060.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223543695|gb|EEF45223.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1492 bits (3863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 730/798 (91%), Positives = 754/798 (94%), Gaps = 6/798 (0%)

Query: 1   MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPH-QELQNSKPHNQTSPPTK 59
           MPIRQMK+SSEQHLV+KTHLQNTMNQ QK  K AQNGKGPP  QE  NSKP NQTSPPTK
Sbjct: 1   MPIRQMKESSEQHLVLKTHLQNTMNQPQKHHKIAQNGKGPPQSQETHNSKPQNQTSPPTK 60

Query: 60  NRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNGRSLCATEM 119
           NRGRRRGRGGRKSDQ DVF RPSSRPCTV HKPVNQ   L+ +  NG  GN   +C  EM
Sbjct: 61  NRGRRRGRGGRKSDQGDVFTRPSSRPCTVVHKPVNQAGGLLANAPNGNSGN---ICEMEM 117

Query: 120 G--FPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNR 177
           G  FPTSSKSL++A RPGYGQ+GTKCIVKANHFFAEL DKDLNQYDVTITPEVASRT NR
Sbjct: 118 GLGFPTSSKSLTYARRPGYGQLGTKCIVKANHFFAELLDKDLNQYDVTITPEVASRTTNR 177

Query: 178 AIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVRE 237
           AIMAELVRLYKESDLGMRLPAYDGRKSLYT+GELPF WKEF IKLVDE DG+NGPKR RE
Sbjct: 178 AIMAELVRLYKESDLGMRLPAYDGRKSLYTSGELPFAWKEFIIKLVDEDDGVNGPKRERE 237

Query: 238 YKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIR 297
           YKVVIKF ARANMHHLGQFLAGKRADAPQEALQILDIVLRELST+RYCP+GRSFFSP IR
Sbjct: 238 YKVVIKFVARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTRRYCPVGRSFFSPDIR 297

Query: 298 TPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTL 357
            PQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIE VAQLLGKDVLSR L
Sbjct: 298 APQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIELVAQLLGKDVLSRPL 357

Query: 358 SDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417
           SD+DR+KIKKALRGVKVEVTHRG VRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ
Sbjct: 358 SDADRIKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417

Query: 418 EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR 477
           EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR
Sbjct: 418 EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR 477

Query: 478 DRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQV 537
           DRENDILQTVQ NAYDQD YAKEFGIKISEKLASVEARILPAPWLKYH+ GKEKDCLPQV
Sbjct: 478 DRENDILQTVQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQV 537

Query: 538 GQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIH 597
           GQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFC+ELAQMCQVSGMEFNPEPVIPI+
Sbjct: 538 GQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIY 597

Query: 598 NARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCC 657
           +ARP+QVEKALKHVYH+SM+KTKGKELELLLAILPDNNG+LYGDLKRICETDLG+ISQCC
Sbjct: 598 SARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGTLYGDLKRICETDLGLISQCC 657

Query: 658 LTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENG 717
           LTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENG
Sbjct: 658 LTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENG 717

Query: 718 EDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLL 777
           EDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTW DPVRGTVSGGMIRDLL
Sbjct: 718 EDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLL 777

Query: 778 ISFRKATGQKPLRIIFYR 795
           +SFRKATGQKPLRIIFYR
Sbjct: 778 VSFRKATGQKPLRIIFYR 795

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102121|ref|XP_002312555.1| argonaute protein group [Populus trichocarpa] gi|222852375|gb|EEE89922.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432808|ref|XP_002279408.1| PREDICTED: protein argonaute 10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432654|ref|XP_004134114.1| PREDICTED: protein argonaute 10-like [Cucumis sativus] gi|449523115|ref|XP_004168570.1| PREDICTED: protein argonaute 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297737118|emb|CBI26319.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575891|ref|XP_003556070.1| PREDICTED: protein argonaute 10-like [Glycine max] Back     alignment and taxonomy information
>gi|356535942|ref|XP_003536500.1| PREDICTED: protein argonaute 10-like [Glycine max] Back     alignment and taxonomy information
>gi|356501789|ref|XP_003519706.1| PREDICTED: protein argonaute 10-like [Glycine max] Back     alignment and taxonomy information
>gi|409127973|gb|AFV15389.1| AGO10A splice variant 2 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|297795033|ref|XP_002865401.1| hypothetical protein ARALYDRAFT_917259 [Arabidopsis lyrata subsp. lyrata] gi|297311236|gb|EFH41660.1| hypothetical protein ARALYDRAFT_917259 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query813
TAIR|locus:2170897 988 AGO10 "ARGONAUTE 10" [Arabidop 0.964 0.793 0.817 0.0
UNIPROTKB|Q69VD5 979 PHN1 "Protein argonaute PNH1" 0.832 0.691 0.831 7.19999999999e-313
UNIPROTKB|Q851R2 1058 MEL1 "Protein argonaute MEL1" 0.824 0.633 0.545 1.9e-202
TAIR|locus:2057851 997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.813 0.662 0.534 6.7e-191
UNIPROTKB|F1P3Z0 860 EIF2C3 "Protein argonaute-3" [ 0.760 0.718 0.382 2.6e-130
UNIPROTKB|F1MG44 860 EIF2C3 "Protein argonaute-3" [ 0.760 0.718 0.381 1.1e-129
UNIPROTKB|Q9H9G7 860 EIF2C3 "Protein argonaute-3" [ 0.760 0.718 0.381 1.1e-129
UNIPROTKB|Q6T5B7 861 EIF2C3 "Protein argonaute-3" [ 0.760 0.717 0.382 1.8e-129
UNIPROTKB|F1LUS2 854 Eif2c3 "Protein Eif2c3" [Rattu 0.760 0.723 0.379 1.8e-129
MGI|MGI:2446634 860 Ago3 "argonaute RISC catalytic 0.760 0.718 0.381 2.3e-129
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3358 (1187.1 bits), Expect = 0., P = 0.
 Identities = 658/805 (81%), Positives = 702/805 (87%)

Query:     1 MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQE--LQNSKPHNQT---- 54
             MPIRQMKDSSE HLVIKT      N     PKT QNGK PP     +  + P   T    
Sbjct:     1 MPIRQMKDSSETHLVIKTQPLKHHN-----PKTVQNGKIPPPSPSPVTVTTPATVTQSQA 55

Query:    55 ---SPPTKNXXXXXXXXXXKSDQNDVFMRPSSRPCTVAHKPVNQVCDLXXXXXXXXXXXX 111
                SPP+KN          KSDQ DV MRPSSRP      P +Q                
Sbjct:    56 SSPSPPSKNRSRRRNRGGRKSDQGDVCMRPSSRPRKPP--PPSQTTSSAVSVATAGEIVA 113

Query:   112 RSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVA 171
              +    +MG     K+ +FAPRPG+G +GTKCIVKANHF A+LP KDLNQYDVTITPEV+
Sbjct:   114 VNH-QMQMGV---RKNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVS 169

Query:   172 SRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGI-N 230
             S++VNRAI+AELVRLYKESDLG RLPAYDGRKSLYTAGELPF WKEF +K+VDE DGI N
Sbjct:   170 SKSVNRAIIAELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIIN 229

Query:   231 GPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRS 290
             GPKR R YKV IKF ARANMHHLG+FLAGKRAD PQEA+QILDIVLRELS KR+CP+GRS
Sbjct:   230 GPKRERSYKVAIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRS 289

Query:   291 FFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 350
             FFSP I+TPQRLG+GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK
Sbjct:   290 FFSPDIKTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 349

Query:   351 DVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK 410
             DVLS+ LSDSDRVKIKK LRGVKVEVTHR  VRRKYRV+GLT+QPTREL+FPVD+N TMK
Sbjct:   350 DVLSKPLSDSDRVKIKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMK 409

Query:   411 SVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLK 470
             SV+EYFQEMYGFTIQHTHLPCLQVGNQKKA+YLPMEACKIVEGQRYTKRLNE+QITALLK
Sbjct:   410 SVIEYFQEMYGFTIQHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLK 469

Query:   471 VTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKE 530
             VTCQRPRDRENDIL+TVQ NAYDQD YAKEFG+ ISEKLASVEARILPAPWLKYHENGKE
Sbjct:   470 VTCQRPRDRENDILRTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKE 529

Query:   531 KDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNP 590
             KDCLPQVGQWNMMNKKMINGMTVSRWAC+NFSRSVQE+VARGFCNEL QMC+VSGMEFNP
Sbjct:   530 KDCLPQVGQWNMMNKKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNP 589

Query:   591 EPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDL 650
             EPVIPI++ARPDQVEKALKHVYH+SM+KTKGKELELLLAILPDNNGSLYGDLKRICET+L
Sbjct:   590 EPVIPIYSARPDQVEKALKHVYHTSMNKTKGKELELLLAILPDNNGSLYGDLKRICETEL 649

Query:   651 GIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGAD 710
             G+ISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVL+DAISCRIPLVSDIPTIIFGAD
Sbjct:   650 GLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGAD 709

Query:   711 VTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSG 770
             VTHPENGE+SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTW DPVRGTVSG
Sbjct:   710 VTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSG 769

Query:   771 GMIRDLLISFRKATGQKPLRIIFYR 795
             GMIRDLLISFRKATGQKPLRIIFYR
Sbjct:   770 GMIRDLLISFRKATGQKPLRIIFYR 794
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM;ISS
GO:0035019 "somatic stem cell maintenance" evidence=IMP
GO:0010586 "miRNA metabolic process" evidence=IMP
GO:0035198 "miRNA binding" evidence=IDA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z0 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MG44 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9G7 EIF2C3 "Protein argonaute-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6T5B7 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUS2 Eif2c3 "Protein Eif2c3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2446634 Ago3 "argonaute RISC catalytic subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6EU14AGO1A_ORYSJNo assigned EC number0.72240.84620.6358yesno
Q7XSA2AGO1B_ORYSJNo assigned EC number0.73390.84620.6153yesno
Q69VD5PNH1_ORYSJNo assigned EC number0.83160.83270.6915yesno
Q9XGW1AGO10_ARATHNo assigned EC number0.82110.96430.7935yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AGO906
argonaute protein group (996 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query813
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 1e-134
cd04657 426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 3e-96
pfam02171 296 pfam02171, Piwi, Piwi domain 7e-42
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 3e-39
pfam02170114 pfam02170, PAZ, PAZ domain 2e-34
smart00950 301 smart00950, Piwi, This domain is found in the prot 3e-29
cd04658 448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 7e-29
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 2e-21
cd02826 393 cd02826, Piwi-like, Piwi-like: PIWI domain 4e-19
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 3e-12
smart00949138 smart00949, PAZ, This domain is named PAZ after th 3e-08
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score =  420 bits (1081), Expect = e-134
 Identities = 246/731 (33%), Positives = 384/731 (52%), Gaps = 77/731 (10%)

Query: 133 RPGYGQVGTKCIVKANHFFAEL--PDKDLNQYDVTITPE----VASRTVNRAIMAELVRL 186
           R G+G  G K  +  NHF   +  PD     Y V++T E    V  + + R ++ ++   
Sbjct: 36  RRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQET 95

Query: 187 YKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVD---------ELDGINGP----- 232
           Y  SDL  +  AYDG KSL+T G LP    EF + L D              NG      
Sbjct: 96  Y-SSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGD 154

Query: 233 -KRVR------EYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYC 285
            KR R       +KV I FAA+  M  +   L G+ ++  Q+AL++LDI+LR+ + K+ C
Sbjct: 155 RKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGC 214

Query: 286 PIGR-SFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFV 344
            + R SFF    +    LG G+    GF+ S R TQ GLSLNID+++   ++P PV++F+
Sbjct: 215 LLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFL 274

Query: 345 AQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPV- 403
             +  ++V  R     D  K K+ L+ ++V+V+       +Y+++GL+ +P +E  F + 
Sbjct: 275 --IANQNV--RDPFQIDWSKAKRMLKNLRVKVSPSNQ---EYKITGLSEKPCKEQTFSLK 327

Query: 404 -------DDNSTMKSVVEYFQEMYGFTIQHT-HLPCLQVGNQKKANYLPMEACKIVEGQR 455
                  +  +   +V +YF +  G  ++++  LPC+ VG  K+  Y P+E C +V  QR
Sbjct: 328 QRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQR 387

Query: 456 YTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEAR 515
           YTK L+  Q ++L++ + Q+P++R   +   ++ + YD D   +  GI IS +   VE R
Sbjct: 388 YTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGR 447

Query: 516 ILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCN 575
           +LPAP LK    G  +D  P+ G+WN  NKK++    + RWA +NFS        R    
Sbjct: 448 VLPAPKLKV---GNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCD---IRHLVR 501

Query: 576 ELAQMCQVSGMEF-NPEPVIP-----IHNARPDQVEKALKHVYHSSMSKTKGKELELLLA 629
           +L +  ++ G+    P  V            P +VEK  + +     SK  G   + LL 
Sbjct: 502 DLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQI----QSKLPGPP-QFLLC 556

Query: 630 ILPD-NNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVL 688
           ILP+  N  +YG  K+   ++ GI++QC       +++ QYL NV LKIN K+GG N++L
Sbjct: 557 ILPERKNSDIYGPWKKKNLSEFGIVTQCIAP---TRVNDQYLTNVLLKINAKLGGLNSLL 613

Query: 689 LDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAH 748
               S  IPLVS +PTII G DV+H   G+   PSIAAVV+S+ WP +++Y   V  Q+ 
Sbjct: 614 AIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSP 673

Query: 749 RQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQ-KPLRIIFYR-----SLFLSVL 802
           + E+I  L+K    PV      G+IR+LL+ F  ++G+ KP +II +R     S F  VL
Sbjct: 674 KVEMIDSLFK----PVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVL 729

Query: 803 RVKVE-IISIC 812
            ++++ II  C
Sbjct: 730 NIELDQIIEAC 740

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 813
PLN03202 900 protein argonaute; Provisional 100.0
KOG1041 876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042 845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657 426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658 448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826 393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171 302 Piwi: Piwi domain; InterPro: IPR003165 This domain 99.98
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.9
cd04659 404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 99.89
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.84
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.84
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.78
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.51
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.47
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.75
COG1431 685 Argonaute homolog, implicated in RNA metabolism [T 97.26
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.3e-118  Score=1076.75  Aligned_cols=668  Identities=34%  Similarity=0.594  Sum_probs=565.4

Q ss_pred             CCCcccCCCCCCCCCCCCeEEEEeeEEEeec--CCCcceeeeEEEcc----CCCChHHHHHHHHHHHHHhccCccCCCcc
Q 003516          124 SSKSLSFAPRPGYGQVGTKCIVKANHFFAEL--PDKDLNQYDVTITP----EVASRTVNRAIMAELVRLYKESDLGMRLP  197 (813)
Q Consensus       124 ~~~~~~~~~RP~~Gt~G~~v~l~tN~f~i~~--~~~~iy~YdV~i~p----~~~~k~~~r~i~~~l~~~~~~~~~~~~~~  197 (813)
                      +++...+++||||||.|++|.|.||||++.+  +++.||||||+|.|    ++.++++++.|++++++.+.. .+.+..+
T Consensus        27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~  105 (900)
T PLN03202         27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDF  105 (900)
T ss_pred             cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCce
Confidence            4455578999999999999999999999997  47889999999996    455678889999999887654 3544568


Q ss_pred             eeeCcceEEEcCCCCCCceeEEEEeccCCCC----------CCC-----------CCCcceEEEEEEEeeeechhhHHHH
Q 003516          198 AYDGRKSLYTAGELPFVWKEFKIKLVDELDG----------ING-----------PKRVREYKVVIKFAARANMHHLGQF  256 (813)
Q Consensus       198 ~yDG~~~Lys~~~L~~~~~~~~v~l~~~~~~----------~~~-----------~~~~~~~~V~Ik~~~~i~l~~l~~~  256 (813)
                      +|||+++|||+.+|+.+..++.|++.++...          .+.           ..+.+.|+|+|++++++++.+|.+|
T Consensus       106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~  185 (900)
T PLN03202        106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA  185 (900)
T ss_pred             eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence            9999999999999998666788877643100          000           1246889999999999999999999


Q ss_pred             hcCCCCCChhHHHHHHHHHHhccccCc-cccCCccccCCCCCCcccCCCCEEEeeeeeeeeeeecceeEEEeeccccccc
Q 003516          257 LAGKRADAPQEALQILDIVLRELSTKR-YCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFI  335 (813)
Q Consensus       257 l~~~~~~~~~~~iq~Lniilr~~~~~~-~~~~Gr~ff~~~~~~~~~l~~Gle~w~Gf~~Svr~~~~~l~LniD~s~~~F~  335 (813)
                      |.|...+.+.+++|+||+|+|+.++.. +..+||+||.+......+++.|+|+|+||++|||+++++++||||+++++||
T Consensus       186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~  265 (900)
T PLN03202        186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV  265 (900)
T ss_pred             HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence            999988888999999999999998654 8889999998664434578999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHhCCCccCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCCCeeeeccCC--------C
Q 003516          336 EPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDN--------S  407 (813)
Q Consensus       336 ~~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~~~--------g  407 (813)
                      ++++|+|+|.++.+..+    ....++.+++++|+|++|.++|+   +++|+|+||++.++++.+|++++.        |
T Consensus       266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~  338 (900)
T PLN03202        266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVET  338 (900)
T ss_pred             cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence            99999999998765321    12234567999999999999997   357999999999999999986531        3


Q ss_pred             ceeeHHHHHHHHhCCcccCC-CCCeEEecCCCccceecccceeecCCccccccCCHHHHHHHHHHhcCCchhhHHHHHHH
Q 003516          408 TMKSVVEYFQEMYGFTIQHT-HLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQT  486 (813)
Q Consensus       408 ~~iSV~~Yf~~~Y~i~L~~p-~lPll~~g~~~k~~ylP~Elc~i~~gQ~~~~~L~~~q~~~mik~t~~~P~~R~~~I~~~  486 (813)
                      +++||+|||+++||++|+|| ++|||.+|+..+++|||||||.|++||+++++|++.|+++|+++|+.+|.+|.+.|.++
T Consensus       339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~  418 (900)
T PLN03202        339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA  418 (900)
T ss_pred             ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            47899999999999999996 99999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCchHHHhhcCeeecCcceeeeeeecCCCeeeeccCCCccccCCCCccccccceeeecCceeceeEEEEeCCCcc
Q 003516          487 VQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQ  566 (813)
Q Consensus       487 ~~~~~~~~~~~l~~fGi~I~~~~~~V~aRvLppP~i~y~~~~~~~~v~p~~G~Wnl~~~kf~~~~~i~~W~vi~~~~~~~  566 (813)
                      ++.++++.+++|++|||+|+++|++|+||+||||+|.|+++.   .+.|.+|+||+++.+|+.++.+++|+|++|.+.  
T Consensus       419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~--  493 (900)
T PLN03202        419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR--  493 (900)
T ss_pred             HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence            988888888999999999999999999999999999998753   346789999999999999999999999988753  


Q ss_pred             HHHHHHHHHHHHHHHHhcCcccCCCCcccccCCC--chHHHHHHHHHHHHhhcccCCCCceEEEEEecCC-CCcchhhhh
Q 003516          567 ESVARGFCNELAQMCQVSGMEFNPEPVIPIHNAR--PDQVEKALKHVYHSSMSKTKGKELELLLAILPDN-NGSLYGDLK  643 (813)
Q Consensus       567 ~~~~~~F~~~L~~~~~~~Gm~i~~~p~v~~~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~lv~vIlp~~-~~~~Y~~IK  643 (813)
                       ..+++|++.|.+.|+.+||.+..|..+.....+  ....+..++.+++++.+.++ ..++|||||||++ +.++|+.||
T Consensus       494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~qlv~vIlp~~~~~~~Y~~IK  571 (900)
T PLN03202        494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP-GPPQFLLCILPERKNSDIYGPWK  571 (900)
T ss_pred             -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc-CCCeEEEEEEcCCCCcchHHHHH
Confidence             358899999999999999999875433111110  01112234444443332222 4689999999974 678999999


Q ss_pred             hhhhhccCceeeeeecccccccCHHHHHHHHHHHHhhcCcccceecccccCCCCcccCCCeEEEEEeecCCCCCCCCCCc
Q 003516          644 RICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPS  723 (813)
Q Consensus       644 ~~~e~~~GI~TQcv~~~t~~K~~~q~~~NI~lKIN~KLGG~N~~l~~~~~~~ip~~~~~~tMIiG~DVtHp~~~~~~~pS  723 (813)
                      ++||+++||+||||...   +.++||++|||||||+||||+||.+....+..+|++.+.+|||||+||+||+++....||
T Consensus       572 ~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pS  648 (900)
T PLN03202        572 KKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPS  648 (900)
T ss_pred             HHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCc
Confidence            99999999999999654   347899999999999999999999875544557888888999999999999998655799


Q ss_pred             EEEEEEecCCCCcccceeEEEecCCceehecccccccCCCCcccchhHHHHHHHHHHHHHc-CCCCCeEEEEcc-----h
Q 003516          724 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKAT-GQKPLRIIFYRS-----L  797 (813)
Q Consensus       724 iaavVaS~D~~~~tky~~~~~~Q~~rqEiI~~l~~~~~d~~~~~~~~~mi~e~L~~f~~~~-~~lP~rIIiYRD-----Q  797 (813)
                      |||||||+|++.+++|++.+++|.+++|+|++|+....+    ..+++|+.++|+.|++.+ +.+|++||||||     |
T Consensus       649 iaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ  724 (900)
T PLN03202        649 IAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQ  724 (900)
T ss_pred             eEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHH
Confidence            999999999767999999999999999999997421111    125899999999999875 699999999999     9


Q ss_pred             hHHHHHHHHHHHHhhC
Q 003516          798 FLSVLRVKVEIISICV  813 (813)
Q Consensus       798 f~~Vl~~El~aIr~a~  813 (813)
                      |.+|+++|+++|++||
T Consensus       725 ~~~Vl~~Ev~~i~~a~  740 (900)
T PLN03202        725 FNQVLNIELDQIIEAC  740 (900)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999985

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query813
4f3t_A 861 Human Argonaute-2 - Mir-20a Complex Length = 861 1e-123
4ei1_A 859 Crystal Structure Of Human Argonaute2 Length = 859 1e-123
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 2e-62
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 1e-61
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 4e-59
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 1e-58
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 5e-36
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 1e-28
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 4e-27
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 2e-26
2yhb_A 437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 1e-12
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 1e-12
2yha_A 388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-12
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 1e-11
4f1n_A 1046 Crystal Structure Of Kluyveromyces Polysporus Argon 3e-11
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 4e-10
1vyn_A143 Structure And Nucleic Acid Binding Of The Drosophil 5e-08
1r6z_P509 The Crystal Structure Of The Argonaute2 Paz Domain 6e-08
1t2r_A123 Structural Basis For 3' End Recognition Of Nucleic 6e-07
3mj0_A124 Crystal Structure Of Drosophia Ago-Paz Domain In Co 6e-07
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 5e-05
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  439 bits (1130), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/673 (36%), Positives = 376/673 (55%), Gaps = 40/673 (5%)
Query: 132 PRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESD 191
           PRP +G  G    ++AN F  ++P  D+  Y++ I PE   R VNR I+  +V+ +K   
Sbjct: 29  PRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQI 88
Query: 192 LGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMH 251
            G R P +DGRK+LYTA  LP    + ++++      + G  + R +KV IK+ +  ++ 
Sbjct: 89  FGDRKPVFDGRKNLYTAMPLPIGRDKVELEVT-----LPGEGKDRIFKVSIKWVSCVSLQ 143
Query: 252 HLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCG 311
            L   L+G+    P E +Q LD+V+R L + RY P+GRSFF+ S      LG G E W G
Sbjct: 144 ALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFG 203
Query: 312 FYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLS---RTLSDSDRVKIKKA 368
           F+QS+RP+   + LNID+++ AF +  PVIEFV ++L    +    + L+DS RVK  K 
Sbjct: 204 FHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKE 263
Query: 369 LRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK---SVVEYFQEMYGFTIQ 425
           ++G+KVE+TH G ++RKYRV  +T +P     FP+   S      +V +YF++ +   ++
Sbjct: 264 IKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLR 323
Query: 426 HTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQ 485
           + HLPCLQVG ++K  YLP+E C IV GQR  K+L + Q + +++ T +   DR+ +I +
Sbjct: 324 YPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISK 383
Query: 486 TVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKD-CLPQVGQWNMMN 544
            ++  +++ D Y +EFGI + +++  V  R+L  P + Y   G+ K    P  G W+M N
Sbjct: 384 LMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDMRN 441
Query: 545 KKMINGMTVSRW--ACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPD 602
           K+   G+ +  W  AC    R   E   + F  +L ++ + +GM    +P    +    D
Sbjct: 442 KQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGAD 501
Query: 603 QVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHV 662
            VE   +H+      K     L+L++ ILP     +Y ++KR+ +T LG+ +QC   K+V
Sbjct: 502 SVEPMFRHL------KNTYAGLQLVVVILPGKT-PVYAEVKRVGDTVLGMATQCVQMKNV 554
Query: 663 FKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSP 722
            + + Q L+N+ LKINVK+GG N +LL       P V   P I  GADVTHP  G+   P
Sbjct: 555 QRTTPQTLSNLCLKINVKLGGVNNILLPQGR---PPVFQQPVIFLGADVTHPPAGDGKKP 611
Query: 723 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRK 782
           SIAAVV S D     +Y   V  Q HRQE+IQDL               M+R+LLI F K
Sbjct: 612 SIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYK 657
Query: 783 ATGQKPLRIIFYR 795
           +T  KP RIIFYR
Sbjct: 658 STRFKPTRIIFYR 670
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 Back     alignment and structure
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 Back     alignment and structure
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query813
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 0.0
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-152
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 1e-82
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 1e-67
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 4e-59
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 7e-57
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 6e-47
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 7e-45
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 6e-44
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 6e-42
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 2e-41
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 1e-39
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 1e-28
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 6e-26
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 2e-23
3qir_A148 PIWI-like protein 2; structural genomics consortiu 5e-16
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 9e-14
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  611 bits (1577), Expect = 0.0
 Identities = 248/683 (36%), Positives = 377/683 (55%), Gaps = 38/683 (5%)

Query: 122 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMA 181
           P    +    PRP +G  G    ++AN F  ++P  D+  Y++ I PE   R VNR I+ 
Sbjct: 19  PIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVE 78

Query: 182 ELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVV 241
            +V+ +K    G R P +DGRK+LYTA  LP    + ++++    +G     + R +KV 
Sbjct: 79  HMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEG-----KDRIFKVS 133

Query: 242 IKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQR 301
           IK+ +  ++  L   L+G+    P E +Q LD+V+R L + RY P+GRSFF+ S      
Sbjct: 134 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNP 193

Query: 302 LGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK---DVLSRTLS 358
           LG G E W GF+QS+RP+   + LNID+++ AF +  PVIEFV ++L     +   + L+
Sbjct: 194 LGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 253

Query: 359 DSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK---SVVEY 415
           DS RVK  K ++G+KVE+TH G ++RKYRV  +T +P     FP+   S      +V +Y
Sbjct: 254 DSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQY 313

Query: 416 FQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQR 475
           F++ +   +++ HLPCLQVG ++K  YLP+E C IV GQR  K+L + Q + +++ T + 
Sbjct: 314 FKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARS 373

Query: 476 PRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLP 535
             DR+ +I + ++  +++ D Y +EFGI + +++  V  R+L  P + Y     +    P
Sbjct: 374 APDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYG-GRNKAIATP 432

Query: 536 QVGQWNMMNKKMINGMTVSRWACINFS--RSVQESVARGFCNELAQMCQVSGMEFNPEPV 593
             G W+M NK+   G+ +  WA   F+  R   E   + F  +L ++ + +GM    +P 
Sbjct: 433 VQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPC 492

Query: 594 IPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGII 653
              +    D VE   +H+      K     L+L++ ILP     +Y ++KR+ +T LG+ 
Sbjct: 493 FCKYAQGADSVEPMFRHL------KNTYAGLQLVVVILPGKT-PVYAEVKRVGDTVLGMA 545

Query: 654 SQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTH 713
           +QC   K+V + + Q L+N+ LKINVK+GG N +LL       P V   P I  GADVTH
Sbjct: 546 TQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTH 602

Query: 714 PENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMI 773
           P  G+   PSIAAVV S D     +Y   V  Q HRQE+IQDL               M+
Sbjct: 603 PPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMV 648

Query: 774 RDLLISFRKATGQKPLRIIFYRS 796
           R+LLI F K+T  KP RIIFYR 
Sbjct: 649 RELLIQFYKSTRFKPTRIIFYRD 671
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 813
d1yvua2 392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 2e-45
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 1e-43
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 1e-42
d1w9ha1 316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 5e-28
d1u04a2 447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 1e-22
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 1e-04
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  166 bits (421), Expect = 2e-45
 Identities = 42/252 (16%), Positives = 86/252 (34%), Gaps = 41/252 (16%)

Query: 553 VSRWACINFSRSVQ-ESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHV 611
           V     I+ S   + E     F  EL    +  G++   +    I     ++ ++ L  V
Sbjct: 37  VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPV 96

Query: 612 YHSSMSKTKGKELELLLAILPDNNGS-------LYGDLKRICETDLGIISQCCLTKHVFK 664
            +      K K+++L++  L +           LY  +KR       I SQ  L + +  
Sbjct: 97  IN------KIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKN 149

Query: 665 ISKQYLA-NVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPS 723
            + +++  NV+ ++  K G     L +        +        G D++       +  +
Sbjct: 150 ENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTVNA 201

Query: 724 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKA 783
           +A         E+ +Y  L    A  ++L +                  I D+     K 
Sbjct: 202 VAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK----------------AIGDVFSLLEKL 244

Query: 784 TGQKPLRIIFYR 795
             +K  +I+ +R
Sbjct: 245 GFKKGSKIVVHR 256
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query813
d1yvua2 392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1u04a2 447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1w9ha1 316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.96
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.94
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=9.7e-43  Score=270.53  Aligned_cols=227  Identities=19%  Similarity=0.148  Sum_probs=170.0

Q ss_pred             EECEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             200029999388-8247899999999999988419413789930223799348999999999986201379972499999
Q 003516          552 TVSRWACINFSR-SVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAI  630 (813)
Q Consensus       552 ~i~~W~~i~~~~-~~~~~~~~~f~~~L~~~~~~~Gi~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~liivI  630 (813)
                      .+-.|.++.+.. ...+..+++|+++|.+.|+..||++..++...+.....++.+..+.+.+++.      .++++++||
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~vi  109 (392)
T d1yvua2          36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKI------KDVDLVIVF  109 (392)
T ss_dssp             SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTTT------SSCSEEEEE
T ss_pred             CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCHHHHHHHHHHHC------CCCCEEEEE
T ss_conf             63442478999963106679999999999998629264578867131277511599999998402------677789999


Q ss_pred             ECCCCC-------CCHHHHHHHHHHCCCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC
Q ss_conf             328998-------50122556542003702464421321446877-9999999988404962301023223798863699
Q 003516          631 LPDNNG-------SLYGDLKRICETDLGIISQCCLTKHVFKISKQ-YLANVSLKINVKMGGRNTVLLDAISCRIPLVSDI  702 (813)
Q Consensus       631 lp~~~~-------~~Y~~iK~~~e~~~GI~TQci~~~t~~K~~~q-~~~Ni~lKiN~KLGG~N~~l~~~~~~~ip~~~~~  702 (813)
                      +|++..       ++|+.||++| .+.||+||||..+|+.+.+.+ ++.||++|||+||||+||.+.+     .+   ..
T Consensus       110 ~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~-----~~---~~  180 (392)
T d1yvua2         110 LEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE-----IE---GK  180 (392)
T ss_dssp             EC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC-----CT---TC
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCC-----CC---CC
T ss_conf             76888866555404799999998-54996648988666168983589999999999984983468878-----89---99


Q ss_pred             CEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEHECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             96999785307899999998289999952889756420588852785101101101157997664436899999999999
Q 003516          703 PTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRK  782 (813)
Q Consensus       703 ~tMIiG~DVsHp~~~~~~~pSi~avVaS~d~~~~tky~~~~~~Q~~~qE~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~  782 (813)
                      +|||||+||+|++++.. .++++|++++.|......++.....|..++|++                .+++.++|..|++
T Consensus       181 ~tmiIGiDv~h~~~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~----------------~~~~~~~l~~~~~  243 (392)
T d1yvua2         181 VDAFVGIDISRITRDGK-TVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLT----------------EKAIGDVFSLLEK  243 (392)
T ss_dssp             CSEEEEECEEECCCSSS-CCCEEEEEEEECTTSCEEEEEEEEECSCTTHHH----------------HHHHHHHHHHHHH
T ss_pred             CEEEEEEEEEECCCCCC-CCCEEEEEEEECCCCCEEEEEEEECCCCCHHHH----------------HHHHHHHHHHHHH
T ss_conf             75999999871588898-463899999986899778999885477607899----------------9999999999999


Q ss_pred             HCCCCCCEEEEECC-HHHHHHHHHHHHHHHHC
Q ss_conf             72999984999845-26799999999998429
Q 003516          783 ATGQKPLRIIFYRS-LFLSVLRVKVEIISICV  813 (813)
Q Consensus       783 ~~~~lP~rIIiYRD-Qf~~Vl~~Ei~~Ir~a~  813 (813)
                      .++.+|+||||||| .+   .++|+++|++|+
T Consensus       244 ~~~~~P~rIIi~RdG~~---~~~El~~i~~a~  272 (392)
T d1yvua2         244 LGFKKGSKIVVHRDGRL---YRDEVAAFKKYG  272 (392)
T ss_dssp             TTCCTTCEEEEEESSCC---CHHHHHHHHHHH
T ss_pred             HCCCCCCEEEEEECCCC---CHHHHHHHHHHH
T ss_conf             64999866999958877---379999999999
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure