Citrus Sinensis ID: 003533

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810--
MNPMDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNPVYLHIKQTRKLVAPEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSYPSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGSKFLKHILAYFIPNLYMLSVLHASFANNHCEILDYVLTILAVALLCVRCLPYWKVCLLLLLH
cccHHHHHHHccccccccccccEEccccccccccccccccCEEEccccccccHHHHHHHHHHccccEEEEEEEEEEcccccccccccccEEEcccccccccccccCEEEEEEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHcccEEEEEccccccccccEEEEcccccccccccHHHHHHHccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccccccccCEEEEECccccccEEEEEEEEEEEccccCEEcccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcc
********SNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNPVYLHIKQTRKLV**********TLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSYPSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYS********************EGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVH**********SFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKL**************EIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISH****************************ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPD*********QCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPD*****************************KFLKHILAYFIPNLYMLSVLHASFANNHCEILDYVLTILAVALLCVRCLPYWKVCLLLLLH
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MNPMDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNPVYLHIKQTRKLVAPEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSYPSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGSKFLKHILAYFIPNLYMLSVLHASFANNHCEILDYVLTILAVALLCVRCLPYWKVCLLLLLH

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ubiquitin carboxyl-terminal hydrolase 14 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development.confidentQ8L6Y1
Ubiquitin carboxyl-terminal hydrolase 5 Cleaves linear and branched multiubiquitin polymers with a marked preference for branched polymers. Involved in unanchored 'Lys-48'-linked polyubiquitin disassembly. Binds linear and 'Lys-63'-linked polyubiquitin with a lower affinity.probableP56399
Ubiquitin carboxyl-terminal hydrolase 5 Cleaves linear and branched multiubiquitin polymers with a marked preference for branched polymers. Involved in unanchored 'Lys-48'-linked polyubiquitin disassembly. Binds linear and 'Lys-63'-linked polyubiquitin with a lower affinity. Knock-down of USP5 causes the accumulation of p53/TP53 and an increase in p53/TP53 transcriptional activity because the unanchored polyubiquitin that accumulates is able to compete with ubiquitinated p53/TP53 but not with MDM2 for proteasomal recognition.probableP45974

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.4.-.-Acting on peptide bonds (peptide hydrolases).probable
3.4.19.-Omega peptidases.probable
3.4.19.12Ubiquitinyl hydrolase 1.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3IHP, chain A
Confidence level:very confident
Coverage over the Query: 3-74,107-141,158-270,305-376,399-609,624-724,743-750
View the alignment between query and template
View the model in PyMOL
Template: 2LBC, chain A
Confidence level:probable
Coverage over the Query: 623-729
View the alignment between query and template
View the model in PyMOL