Citrus Sinensis ID: 003564
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 810 | 2.2.26 [Sep-21-2011] | |||||||
| Q6YYA3 | 725 | Chloroplastic group IIA i | no | no | 0.703 | 0.786 | 0.387 | 1e-104 | |
| Q9FYT6 | 715 | Chloroplastic group IIA i | N/A | no | 0.627 | 0.710 | 0.413 | 1e-100 | |
| Q9LF10 | 720 | Chloroplastic group IIA i | no | no | 0.646 | 0.727 | 0.388 | 7e-97 | |
| Q67XL4 | 444 | Uncharacterized CRM domai | no | no | 0.214 | 0.391 | 0.357 | 5e-23 | |
| Q9SL79 | 701 | CRS2-associated factor 1, | no | no | 0.170 | 0.196 | 0.286 | 3e-07 | |
| Q84N49 | 674 | CRS2-associated factor 1, | N/A | no | 0.111 | 0.133 | 0.351 | 5e-07 | |
| Q6Z4U2 | 428 | CRS2-associated factor 1, | no | no | 0.083 | 0.158 | 0.351 | 7e-07 | |
| Q5VMQ5 | 701 | CRS2-associated factor 1, | no | no | 0.116 | 0.134 | 0.336 | 8e-07 | |
| Q0J7J7 | 366 | CRS2-associated factor 2, | no | no | 0.076 | 0.169 | 0.367 | 9e-06 | |
| Q657G7 | 607 | CRS2-associated factor 2, | no | no | 0.111 | 0.148 | 0.308 | 9e-06 |
| >sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1 | Back alignment and function desciption |
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Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 229/591 (38%), Positives = 346/591 (58%), Gaps = 21/591 (3%)
Query: 228 VLPWKRNTDR------RRRSNTEL---AEKMIPEHELQRLRNISLRMLERTKVGSAGITQ 278
+PW D RR T + AE + EL+RLR + + AGIT
Sbjct: 124 AVPWAAARDEETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITD 183
Query: 279 ALVDSIHEKW-KLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAY 337
+V+ + +W K E+ ++ EP M R EILE +TGGLV+W G ++RG +Y
Sbjct: 184 EVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243
Query: 338 KLPCVQSFTKH----NHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEEL 393
+++ +H N+ ++ VT+ + G++ + + D A++ ++ +
Sbjct: 244 ----LENAKRHRDFVNYNEELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGT 299
Query: 394 MDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCET 453
+ E+N LLD LGPRF DW PLPVDADLLP VVPD+K P R P G++P L D E
Sbjct: 300 LYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEEL 359
Query: 454 TEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELK 513
T R+ AR P HF LGRN +LQGLA A++KLWEKS IAK+A+K + NT +E+MA LK
Sbjct: 360 TYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLK 419
Query: 514 KLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERAR-HVASALIEL 572
+LTGGT++ RNKDYI+ YRG DFLP V ++V ER +Q +EE AR +A +L +
Sbjct: 420 RLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSLQMI 479
Query: 573 KAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAK 632
S V GT E R+ + E+ ++ ++ R L+ E +L++
Sbjct: 480 VGLSSERSYV-GTFREYQDFHDSHARR-TTENNFRIQLEAKKHRLEKELKDQEWRLSMLT 537
Query: 633 RKLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTI 692
+K++ +++ LAK+ S P++ D E +T EER + RK+GL M ++LLGRRG+++G I
Sbjct: 538 KKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVI 597
Query: 693 ENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
E +H HWK++E+VK+I K +Q+ ++ LE E+GG L+++++ AII+YRGKNY
Sbjct: 598 EEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNY 657
Query: 753 VRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELEEI 803
RP K P NLLT+R+AL RS+E+QRR +K+ + ++ I+ +K EL +
Sbjct: 658 RRPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKRELRNV 708
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Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 810 | ||||||
| 359484307 | 884 | PREDICTED: chloroplastic group IIA intro | 0.960 | 0.880 | 0.600 | 0.0 | |
| 297738658 | 881 | unnamed protein product [Vitis vinifera] | 0.950 | 0.874 | 0.600 | 0.0 | |
| 255546121 | 930 | conserved hypothetical protein [Ricinus | 0.970 | 0.845 | 0.561 | 0.0 | |
| 224091282 | 977 | predicted protein [Populus trichocarpa] | 0.820 | 0.680 | 0.621 | 0.0 | |
| 449452735 | 846 | PREDICTED: chloroplastic group IIA intro | 0.940 | 0.900 | 0.550 | 0.0 | |
| 449529423 | 789 | PREDICTED: chloroplastic group IIA intro | 0.906 | 0.930 | 0.572 | 0.0 | |
| 356564786 | 794 | PREDICTED: chloroplastic group IIA intro | 0.7 | 0.714 | 0.652 | 0.0 | |
| 334187011 | 841 | CRS1 / YhbY (CRM) domain-containing prot | 0.835 | 0.804 | 0.530 | 0.0 | |
| 242044486 | 962 | hypothetical protein SORBIDRAFT_02g02294 | 0.834 | 0.702 | 0.529 | 0.0 | |
| 115478793 | 947 | Os09g0363100 [Oryza sativa Japonica Grou | 0.841 | 0.720 | 0.517 | 0.0 |
| >gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/822 (60%), Positives = 601/822 (73%), Gaps = 44/822 (5%)
Query: 25 KPQSQCSNSFRSIRIGICFSHLTIQAQ-------LGTTRTKRKVKPSFFEQIRHKWSHKV 77
+PQ+ SN+FR+++ S+ +IQ L TT+ KRK +PSFFEQIR KWS K+
Sbjct: 17 QPQAHYSNTFRTLKFNCSCSYHSIQVDTQQVKVPLKTTKAKRKPRPSFFEQIRDKWSLKI 76
Query: 78 ISPREKFPWQEEEEEEEEVQNE--PETDVESRVRSEPFSSALPNRFVSAPWIHGTDSKEI 135
SPREKFPWQE+ EE + P+++V P SSA +RFVS P IH + +
Sbjct: 77 NSPREKFPWQEQAEETQNSSGVVVPDSEVIDSSVGSPVSSASESRFVSVPCIHESKPRNP 136
Query: 136 KFDS-PQTKITTKKEDIGDDGLLGSFEKTVVHSAVKEKTVIELDKEGDYNKELKTDEVKI 194
+ S P+ + ++ + G GS H A ++ KE D + + + + V++
Sbjct: 137 RLVSEPEISQNSCEQGVNVVGF-GS------HRASVDEWSKSFQKEVDSDGKFEGEGVEV 189
Query: 195 DANPIELSKDRHREVG------SLNQK---------QIKGYHEVDDPSVLPWKRNT---- 235
D PI + E+ SLN+K +G+ LPWKR
Sbjct: 190 DEIPIGVLGTEKTEIEMGDANVSLNEKPPGGDEDFGNFEGFSGNSSLIELPWKRREGLQP 249
Query: 236 ---DRRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDE 292
D R NT +AE+M+PEHEL+RL+NI+LRMLER KVG+AG+TQ+LVD+IHEKW+ DE
Sbjct: 250 VERDGWGRRNTRMAERMVPEHELRRLKNIALRMLERIKVGAAGVTQSLVDAIHEKWRKDE 309
Query: 293 VVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKH---- 348
VVKLKFE P S MKRTHEILE RTGGLVIWR+GSSVVL+RGMAYKL CVQS+ K
Sbjct: 310 VVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVVLYRGMAYKLHCVQSYIKQERDN 369
Query: 349 -NHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDLCELNYLLDELG 407
N ++ +QD N +++++G ES + DSA L++LS+EELMDL ELN+LLDELG
Sbjct: 370 VNISEYSQDAANVIIQDIGVKDIVKTTESVISDSARYLKDLSEEELMDLSELNHLLDELG 429
Query: 408 PRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHF 467
PRFKDW GREPLPVDADLLP VV +YKPP RLLPYG++ LR+ E T RRLAR PPHF
Sbjct: 430 PRFKDWSGREPLPVDADLLPSVVHEYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHF 489
Query: 468 ALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDY 527
ALGR+RELQGLA AMVKLWE+SAIAKIAIKR V NT N+RMAEELK LTGGTL+ RNKDY
Sbjct: 490 ALGRSRELQGLAMAMVKLWERSAIAKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDY 549
Query: 528 IVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLVAGTLA 587
IVFYRGNDFLPP V +A+KER KL D++QDEEE+ARH ASALI+ KA+ G LVAGTLA
Sbjct: 550 IVFYRGNDFLPPHVMEALKERRKLRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLA 609
Query: 588 ETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAKRKLKMADKALAKVQE 647
ETLAATSRWG +PS EDV KM+RDS L+RHASL+RY+ +KLA AK KLK +KAL KVQE
Sbjct: 610 ETLAATSRWGSEPSEEDVGKMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQE 669
Query: 648 SLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKI 707
L+PAELP DLET+++EERFL RK+GLSMKP+LLLG RGI+DGT+ENMHLHWKYRELVKI
Sbjct: 670 DLEPAELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKI 729
Query: 708 IVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRR 767
IVKGK+FAQVK IAISLEAESGGVLVS+D+TPKG AIIVYRGKNY RP LRP+NLLT+R
Sbjct: 730 IVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKR 789
Query: 768 QALARSVELQRREGLKHHILDLQERIELVKSELEEIEGGKTM 809
QALARS+ELQR E LKHHI DL+ERI+L+KS EE++ G +
Sbjct: 790 QALARSIELQRHEALKHHISDLEERIKLLKSLPEEMKTGNGI 831
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis] gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa] gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor] gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group] gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group] gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group] gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group] gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 810 | ||||||
| TAIR|locus:2094558 | 881 | CFM3A "CRM family member 3A" [ | 0.695 | 0.639 | 0.480 | 2.8e-137 | |
| TAIR|locus:2094997 | 848 | EMB1865 "embryo defective 1865 | 0.685 | 0.654 | 0.435 | 2.8e-114 | |
| TAIR|locus:2096662 | 1011 | CFM2 "CRM family member 2" [Ar | 0.702 | 0.562 | 0.422 | 1.4e-112 | |
| TAIR|locus:2181372 | 720 | CRS1 "ortholog of maize chloro | 0.497 | 0.559 | 0.404 | 1e-84 | |
| TAIR|locus:2094438 | 444 | LOH1 "LAG One Homologue 1" [Ar | 0.187 | 0.342 | 0.375 | 9.9e-21 | |
| TAIR|locus:2056558 | 372 | AT2G28480 [Arabidopsis thalian | 0.160 | 0.349 | 0.430 | 9.3e-20 | |
| TAIR|locus:2123276 | 343 | AT4G13070 [Arabidopsis thalian | 0.174 | 0.411 | 0.392 | 7.4e-19 | |
| TAIR|locus:2091458 | 491 | AT3G27550 [Arabidopsis thalian | 0.174 | 0.287 | 0.340 | 1.4e-15 | |
| TAIR|locus:2061604 | 701 | CAF1 [Arabidopsis thaliana (ta | 0.170 | 0.196 | 0.286 | 1.6e-11 | |
| TAIR|locus:2028100 | 564 | CAF2 [Arabidopsis thaliana (ta | 0.171 | 0.246 | 0.267 | 1.4e-08 |
| TAIR|locus:2094558 CFM3A "CRM family member 3A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
Identities = 277/577 (48%), Positives = 381/577 (66%)
Query: 238 RRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLK 297
++ + LAE +PE EL+RLRN++ R + ++ G+TQ VD+I EKWK E+V+LK
Sbjct: 209 KKENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLK 268
Query: 298 FEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDV 357
E +L M++ HEILE++TGGLVIWRSG+S+ L+RG++Y+LP K N ++ +
Sbjct: 269 IEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPS----GKWNKQRREETP 324
Query: 358 TNEVMRNVGEHPP---RSAMESYVPDSANNLENLSKEELMDLC-----ELNYLLDELGPR 409
V+ N E +S + ++P ++ K++ EL+ LLD+LGPR
Sbjct: 325 PEAVIENHDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPR 384
Query: 410 FKDWPGREXXXXXXXXXXXXXXXYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFAL 469
F DWPG Y+PP R+LPYG++ L E T RRLAR PPHFAL
Sbjct: 385 FMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFAL 444
Query: 470 GRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIV 529
GR+R+LQGLA AMV+LWEKS +AKIAIKR V +T +ERMAE+LKKLTGG +L RNKD++V
Sbjct: 445 GRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLV 504
Query: 530 FYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLV-AGTLAE 588
FYRG +FL V DA+ E+ + QDEEE+AR S+ + + + LV AGTL E
Sbjct: 505 FYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGE 564
Query: 589 TLAATSRWGRQPSYED-VEKMMRDSTLSRHASLLRYXXXXXXXXXXXXXXXXXXXXXVQE 647
TL AT +WG+ +D +++ ++ + RH +L+R V+
Sbjct: 565 TLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEV 624
Query: 648 SLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKI 707
L PAE D E+IT+EERF+ RK+GL MK +LLLGRRG++DGT+ENMHLHWKYRELVKI
Sbjct: 625 CLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 684
Query: 708 IVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRR 767
IVK K+F VK++A++LEAESGG+LVS+DK KG AIIVYRG++Y RP LRP+NLLT+R
Sbjct: 685 IVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKR 744
Query: 768 QALARSVELQRREGLKHHILDLQERIELVKSELEEIE 804
+ALARS+ELQRREGL HI +Q + + +++E+E++E
Sbjct: 745 KALARSIELQRREGLLKHISTMQAKAKQLRAEIEQME 781
|
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| TAIR|locus:2094997 EMB1865 "embryo defective 1865" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2096662 CFM2 "CRM family member 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2181372 CRS1 "ortholog of maize chloroplast splicing factor CRS1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2094438 LOH1 "LAG One Homologue 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2056558 AT2G28480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2123276 AT4G13070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2091458 AT3G27550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061604 CAF1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2028100 CAF2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00016549001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (884 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 810 | |||
| smart01103 | 84 | smart01103, CRS1_YhbY, Escherichia coli YhbY is as | 5e-21 | |
| pfam01985 | 84 | pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | 3e-20 | |
| pfam01985 | 84 | pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | 5e-17 | |
| smart01103 | 84 | smart01103, CRS1_YhbY, Escherichia coli YhbY is as | 1e-15 | |
| smart01103 | 84 | smart01103, CRS1_YhbY, Escherichia coli YhbY is as | 2e-14 | |
| pfam01985 | 84 | pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | 8e-13 |
| >gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 5e-21
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 661 ITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQI 720
+T +++ LR + +KP + +G+ G+ +G +E + + EL+K+ V G K+I
Sbjct: 1 LTGKQKRYLRSLAHHLKPVVQIGKNGLTEGVLEEIDEALEKHELIKVKVLGNDREDRKEI 60
Query: 721 AISLEAESGGVLVSLDKTPKGIAIIVYR 748
A L E+G LV + G I++YR
Sbjct: 61 AEELAEETGAELVQV----IGKTIVLYR 84
|
GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84 |
| >gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | Back alignment and domain information |
|---|
| >gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | Back alignment and domain information |
|---|
| >gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly | Back alignment and domain information |
|---|
| >gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly | Back alignment and domain information |
|---|
| >gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 810 | |||
| KOG1990 | 564 | consensus Poly(A)-specific exoribonuclease PARN [R | 100.0 | |
| PRK10343 | 97 | RNA-binding protein YhbY; Provisional | 99.92 | |
| PF01985 | 84 | CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR | 99.92 | |
| TIGR00253 | 95 | RNA_bind_YhbY putative RNA-binding protein, YhbY f | 99.92 | |
| PRK10343 | 97 | RNA-binding protein YhbY; Provisional | 99.91 | |
| TIGR00253 | 95 | RNA_bind_YhbY putative RNA-binding protein, YhbY f | 99.91 | |
| PF01985 | 84 | CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR | 99.9 | |
| COG1534 | 97 | Predicted RNA-binding protein containing KH domain | 99.9 | |
| COG1534 | 97 | Predicted RNA-binding protein containing KH domain | 99.87 | |
| KOG1990 | 564 | consensus Poly(A)-specific exoribonuclease PARN [R | 98.69 |
| >KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-73 Score=637.24 Aligned_cols=523 Identities=46% Similarity=0.647 Sum_probs=484.3
Q ss_pred cccchhhhhcCCCCHHHHHHHHHhhhcCCCeEEeCCCCCCHHHHHHHHHHhhhCCeEEEEecCCChHhHHHHHHHHHHHh
Q 003564 238 RRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRT 317 (810)
Q Consensus 238 ~~~s~~~lae~tLT~kErr~LRklAh~LkpvV~IGK~GLTd~VVeeIh~awk~~ELVKVK~~~~~~~dmk~a~e~LEekT 317 (810)
+..+ +.+|++++.+.++.+||..|.++...+ +++|+|+++++.|++.|+.+|+++++|....+.+|.+.+++++..|
T Consensus 3 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~y~k~k~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 79 (564)
T KOG1990|consen 3 NFES-LSLAELTVDEADLRRLRLVATGMTSAP--WKAGSTFDTVEAIYLKWKDNEEVYLKFQFGLCLFMKRSHEALEMST 79 (564)
T ss_pred cccc-hhHHHhhcCHHHHHHHhhhhccceecc--cccccchhhhHHHHHHHHhhhhhheeeccccchhHHHhhhHhhccC
Confidence 4556 999999999999999999999998888 9999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEEEccEEEEeecCCCCCCCcccccccccccccccccchhhcccCCCCCCCccccCCCCcccccccchHHHHhhH
Q 003564 318 GG-LVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDL 396 (810)
Q Consensus 318 Gg-~VVqrIG~viVLYRG~nY~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ee~~~~ 396 (810)
|| .+||+.|.....|++..|..|..-.... .+ ....... ....
T Consensus 80 ~~n~~~~~~g~~~s~~~~~~~~~~~~~~~~~--------------------------~~--------~~~~~~~--~~~~ 123 (564)
T KOG1990|consen 80 GGNFVVWSRGDSISSPEFLCQRSPVDFVARQ--------------------------QE--------NQAGKWP--SELE 123 (564)
T ss_pred CCceeeeecCccccCCccceeecchhhhhhh--------------------------ch--------hhhhhhH--HHHH
Confidence 99 9999999999999999999884211000 00 0000101 1236
Q ss_pred hhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHhhhcCCCceEecccchhh
Q 003564 397 CELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQ 476 (810)
Q Consensus 397 ~E~n~LLD~LGPRf~dW~g~~PlPVDaDLLP~vvPgy~~PfRllP~gv~~~Ls~~E~t~LRk~ar~lpph~aLGRn~~~~ 476 (810)
++.+.++|++||+|.|||+.+|+|+|+||+|++||+|.+|||.+|+|++++|+..|++.+|++|..+||||++|+++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~~p~r~l~~~~~~~l~~~~~~~~r~~~~~~p~~~~~~~~~~~~ 203 (564)
T KOG1990|consen 124 KEKNELLDSLGPELSDWGGSDRLSVDADLLPEKIPDYMRPFRTLPVGSPPLLTSIESTLLRRLGYKLPPHFALGRSRKLQ 203 (564)
T ss_pred HHHHHHhhccCcccccCCCCCCccchhhhchhhhhcccChhccCCCCChhhhhhHHHHHHHHhcccccccceehhccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCceeEEeecCCCCCCcHHHHHHHH--hhccCcEEEeeeCCeEEEEecCCCCChhhhhHHHHhhhhhhh
Q 003564 477 GLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEEL--KKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDI 554 (810)
Q Consensus 477 gLa~aI~k~wek~~lakI~~K~gv~~T~~~~m~~eL--k~LTGgvLLSRnke~IVlYRGkdf~p~~Va~al~ERe~~~~~ 554 (810)
|++.+|+.+|++|+++++.|++|++.+..+.||.+| ..+||++|++||+.++|+|||++|++ .|.++|.++......
T Consensus 204 ~~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg~~lv~hN~~~dv~y~~~~Fl~-~lp~~l~~f~~~~~~ 282 (564)
T KOG1990|consen 204 GLAVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTGKVLVLHNKLLDVMYRYKNFLS-PLPSTLEEFTDSSSM 282 (564)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcCCeEEeeccceeeeeehhhccc-ccchhHHHhhhhhhh
Confidence 999999999999999999999999999999999999 99999999999999999999999999 999999999999888
Q ss_pred hhhHHHHhhhhhhHHHHhhccccccccccccHHHHHHHhhhccCCCChhHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003564 555 RQDEEERARHVASALIELKAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVE-KMMRDSTLSRHASLLRYLEQKLALAKR 633 (810)
Q Consensus 555 ~q~eEE~aR~~~~~~~~~~~~~~~~~~~aGtl~E~~~a~~~wg~~~~~~~~~-~~~~e~~~~~~~~~~k~~e~kL~~a~~ 633 (810)
.++.++.+|..... + ......+||+.|+..+.++|+......+.. .+..+......+...+.+.++++.+..
T Consensus 283 fp~~~~~~~~~~~~---~----~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 355 (564)
T KOG1990|consen 283 FPNIEDTKRLAKLS---E----YQKLNLKATLLELARAKAKKEKEIERRSISSRLKLEFEKASSEKLTEAIFHKLEKAKK 355 (564)
T ss_pred hhhhHHHHHhhccc---c----ccchhhhhhHHHHHHHhcccccCcccccccchhhhhhhccchhhHHHHHHHHHhhhhh
Confidence 89999999966511 1 112357899999999999999999877653 678888999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCCCHHHHHHHHHcccCCCceEeeCCCCCCHHHHHHHHHHHHhCceEEEEEcCCC
Q 003564 634 KLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKS 713 (810)
Q Consensus 634 K~~rae~~L~K~~~~~~P~e~~~d~E~LT~eQRk~LRkiGhkLkPvV~IGK~GVtdgVIeeIh~aLk~hELVKVkv~~~~ 713 (810)
|+..+...|++++.+..|.+..+|++.+|.+++.+++++|.+|++++.+|++|+++|+|.++|.||++||++|++|+...
T Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg~f~g~i~n~~l~wk~~e~~k~i~~~~~ 435 (564)
T KOG1990|consen 356 KLASANRILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRGVFDGVIENMHLHWKSRELVKVICKEKN 435 (564)
T ss_pred hccchhhhhhcccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcccccceeecchhhhhhcccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred H-HHHHHHHHHHHHHhCCEEEEeeecCCCcEEEEEccCCCCCCccCCCcccccHHHHHHHhHHHHHhhhhhHHHHHHHHH
Q 003564 714 F-AQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQER 792 (810)
Q Consensus 714 ~-ed~keiA~~Le~~SGgeLVqvik~~iG~tIILYRgkNY~rP~~l~P~nlLtKrkAl~rs~e~qr~~sl~~~i~~l~~~ 792 (810)
. .+++..|..++..+|+++|+++++..|++|+.|||+||++|..+.|.|+|+|++|+.+|+++|++++++.||..++.+
T Consensus 436 ~~~~~~~~a~~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~l~P~~~l~~~k~~~~~~~~~~~~a~~~~i~~~~~~ 515 (564)
T KOG1990|consen 436 LPSQVKQYASALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTSLRPRNLLSRRKALERSLEEQRKEALKSHISDLEQE 515 (564)
T ss_pred ccHHHHHHHHHHHHHhCCceeeeccCCchhhHHHhhhhhccCCcccCchhhhcccCCccccHHHHHHHHHhhhcchhhhh
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 003564 793 IELVKSELEEIEGGK 807 (810)
Q Consensus 793 i~~l~~~l~~~~~~~ 807 (810)
+++++.++..|...+
T Consensus 516 ~e~~~~~~~~~~~~~ 530 (564)
T KOG1990|consen 516 IEQLQASVEAMPAIN 530 (564)
T ss_pred HHHhhcchhcccccc
Confidence 999999998876554
|
|
| >PRK10343 RNA-binding protein YhbY; Provisional | Back alignment and domain information |
|---|
| >PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain | Back alignment and domain information |
|---|
| >TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family | Back alignment and domain information |
|---|
| >PRK10343 RNA-binding protein YhbY; Provisional | Back alignment and domain information |
|---|
| >TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family | Back alignment and domain information |
|---|
| >PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain | Back alignment and domain information |
|---|
| >COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 660 TITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQ 719
T++ +++ L+ + + P ++LG G+ +G + + + EL+K+ V G +
Sbjct: 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 61
Query: 720 IAISLEAESGGVLVSLDKTPKGIAIIVYR 748
I ++ E+ V G +++YR
Sbjct: 62 IINAIVRETKAAQVQT----IGHILVLYR 86
|
| >1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 | Back alignment and structure |
|---|
| >1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 | Back alignment and structure |
|---|
| >1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 810 | ||||
| d1rq8a_ | 96 | d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy | 1e-20 | |
| d1rq8a_ | 96 | d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy | 1e-16 | |
| d1rq8a_ | 96 | d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy | 8e-14 | |
| d1jo0a_ | 97 | d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i | 1e-20 | |
| d1jo0a_ | 97 | d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i | 4e-14 | |
| d1jo0a_ | 97 | d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i | 2e-13 |
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: YhbY-like family: YhbY-like domain: Hypothetical protein SAV1595 species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]
Score = 85.1 bits (211), Expect = 1e-20
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 661 ITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQI 720
+T +++ LR + ++ P +G+ GI + I+ + + REL+K+ V +F K++
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 721 AISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKL 758
A +L + LV + G I++YR + ++L
Sbjct: 62 AETLSEATRSELVQV----IGSMIVIYRESKENKEIEL 95
|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 | Back information, alignment and structure |
|---|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 810 | |||
| d1rq8a_ | 96 | Hypothetical protein SAV1595 {Staphylococcus aureu | 99.9 | |
| d1jo0a_ | 97 | YhbY homologue HI1333 {Haemophilus influenzae [Tax | 99.9 | |
| d1rq8a_ | 96 | Hypothetical protein SAV1595 {Staphylococcus aureu | 99.9 | |
| d1jo0a_ | 97 | YhbY homologue HI1333 {Haemophilus influenzae [Tax | 99.9 |
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: YhbY-like family: YhbY-like domain: Hypothetical protein SAV1595 species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]
Probab=99.90 E-value=1.5e-23 Score=174.94 Aligned_cols=96 Identities=25% Similarity=0.427 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 99999999999702699962760778889889999999987176288997499988799999999988399899732169
Q 003564 660 TITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTP 739 (810)
Q Consensus 660 ~LT~eERk~LRKlGlkLkpvV~IGKrGVtdgVIeeIh~alk~hELVKIkv~q~~~ed~keiA~~Le~~TGgiLVqvik~~ 739 (810)
|||++||++||++||+|+|+|+||++|+|++|+.+|+.+|+.||||||+|.+++.++++++++.|++.|||++||+|
T Consensus 1 mLt~kqr~~LR~~ah~l~p~v~IGk~Glt~~vi~ei~~~l~~~ELIKvk~~~~~~~~~~~~~~~l~~~t~a~~V~~i--- 77 (96)
T d1rq8a_ 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVI--- 77 (96)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEE---
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---
T ss_conf 96989999999976689998998899878999999999997597159996579989999999999998699999998---
Q ss_pred CCCEEEEECCCCCCCCCCCCC
Q ss_conf 781999980689999965787
Q 003564 740 KGIAIIVYRGKNYVRPLKLRP 760 (810)
Q Consensus 740 iG~tIILYRGKNY~rP~~l~P 760 (810)
|+++||||+++ ..|++.+|
T Consensus 78 -G~~~vlyR~~~-~~~ki~LP 96 (96)
T d1rq8a_ 78 -GSMIVIYRESK-ENKEIELP 96 (96)
T ss_dssp -TTEEEEEECCC-SCCSCCCC
T ss_pred -CCEEEEEECCC-CCCCCCCC
T ss_conf -99999995798-89888897
|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|