Citrus Sinensis ID: 003583
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 809 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L6Y1 | 797 | Ubiquitin carboxyl-termin | yes | no | 0.983 | 0.998 | 0.758 | 0.0 | |
| P56399 | 858 | Ubiquitin carboxyl-termin | yes | no | 0.981 | 0.925 | 0.487 | 0.0 | |
| P45974 | 858 | Ubiquitin carboxyl-termin | yes | no | 0.981 | 0.925 | 0.483 | 0.0 | |
| Q5R407 | 858 | Ubiquitin carboxyl-termin | yes | no | 0.981 | 0.925 | 0.480 | 0.0 | |
| Q92995 | 863 | Ubiquitin carboxyl-termin | no | no | 0.978 | 0.917 | 0.435 | 0.0 | |
| F1QFS9 | 860 | Ubiquitin carboxyl-termin | no | no | 0.981 | 0.923 | 0.423 | 0.0 | |
| E1BMF7 | 863 | Ubiquitin carboxyl-termin | no | no | 0.978 | 0.917 | 0.434 | 0.0 | |
| Q5BKP2 | 858 | Ubiquitin carboxyl-termin | no | no | 0.978 | 0.923 | 0.437 | 0.0 | |
| E1BY77 | 862 | Ubiquitin carboxyl-termin | no | no | 0.981 | 0.921 | 0.431 | 0.0 | |
| P54201 | 837 | Ubiquitin carboxyl-termin | yes | no | 0.966 | 0.934 | 0.418 | 0.0 |
| >sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana GN=UBP14 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1299 bits (3361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/806 (75%), Positives = 716/806 (88%), Gaps = 10/806 (1%)
Query: 4 MDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKT 63
M+LLRSNLSRV+IPEPT+RI+K ECC+SFDTPRSEGGLFVD+NSFLA+GKD+V WN+EKT
Sbjct: 1 MELLRSNLSRVQIPEPTHRIYKHECCISFDTPRSEGGLFVDMNSFLAFGKDYVSWNYEKT 60
Query: 64 GNPVYLHIKQTRKLVAPEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSY 123
GNPVYLHIKQTRK + PEDRP KKPTLLAIGV+GGFDNNE EY+E++SIVILP++V+L +
Sbjct: 61 GNPVYLHIKQTRKSI-PEDRPLKKPTLLAIGVDGGFDNNEPEYEESYSIVILPDFVSLPF 119
Query: 124 PSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWK 183
PSVELPEKVR+AVD ++ A GAERKEQVAAWTA+KK S +A+ LQQI +G++IPPSGWK
Sbjct: 120 PSVELPEKVRIAVDTVVNAVGAERKEQVAAWTAEKKLISEHALTLQQIKSGIVIPPSGWK 179
Query: 184 CAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGA 243
C+KCDK +NLWLNLTDGMILCGR+NWDGTGGNNHAVEHYKET YPLAVKLGTIT+DLE A
Sbjct: 180 CSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAYPLAVKLGTITADLEAA 239
Query: 244 DVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDV 303
DV+SYPEDDSV+DPLLA+HLA FGIDFSS+QKTEMTTAERELDQNTNFDWNRIQESG+++
Sbjct: 240 DVYSYPEDDSVLDPLLAEHLAHFGIDFSSMQKTEMTTAERELDQNTNFDWNRIQESGKEL 299
Query: 304 EPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNM 363
P+FGPGYTGLVNLGNSCYLAATMQ++FSTH+F +RY++ + LK AFE APADPT+DLNM
Sbjct: 300 VPVFGPGYTGLVNLGNSCYLAATMQIVFSTHSFISRYFSHQSLKMAFEMAPADPTLDLNM 359
Query: 364 QLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQ 423
QLTKL HGLLSGKYS+PA +KD ATT D +QEGIPPRMFK VIAASH EFSSMRQQ
Sbjct: 360 QLTKLGHGLLSGKYSMPATQKD-----ATTGDPRQEGIPPRMFKNVIAASHAEFSSMRQQ 414
Query: 424 DALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPL 483
DAL+FFLH V +VER + P++DP++SFKFGIEE+I CPSGKV YN+R D ILSL IPL
Sbjct: 415 DALDFFLHLVGKVERASNTTPDLDPSRSFKFGIEEKILCPSGKVGYNKREDCILSLNIPL 474
Query: 484 DEATNKEELAAFQKLKMERISEGKDV-TNEEIVRPRVPLEACLSTFSAPEELPDFYSTAL 542
EATNK+EL AF K K + E D+ +++EIVRPRVPLEACL+ F++ E + D+YS+AL
Sbjct: 475 HEATNKDELEAFHKQKAGKGLEENDMRSSDEIVRPRVPLEACLANFASSEPIEDYYSSAL 534
Query: 543 KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPG 602
K TTA K+ GLTSFPDYLVLHMRKFVME GWVPKKLDVYIDVPD+IDISHMRSKGLQPG
Sbjct: 535 KGMTTAIKTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQPG 594
Query: 603 EELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSH 662
EELLP+G PE+ ++S +PVAN++IV+QLVSMGF+ LHC+KAA+NTSNAGVEEAMNWLLSH
Sbjct: 595 EELLPDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH 654
Query: 663 MDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPD 722
MDDPDID P+S +T + IDQS V+TLLSFGF+E+VAR ALKASGGDIEKATDW+FNNP+
Sbjct: 655 MDDPDIDAPISHQT--SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNPN 712
Query: 723 ASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAI 782
AS S ++++S AQTPA +GLPDGGGKY+LFGIVSH+GTS CGHYVAHILK+GRW I
Sbjct: 713 ASVSDMDVSSSNS-AQTPAQSGLPDGGGKYKLFGIVSHMGTSVHCGHYVAHILKEGRWVI 771
Query: 783 FNDNKVGASVDPPKEMGYLYFFERLN 808
FND+KVG S DPPK+MGY+YFF+RL+
Sbjct: 772 FNDDKVGISTDPPKDMGYVYFFQRLD 797
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5 PE=1 SV=1 | Back alignment and function description |
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| >sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13 PE=1 SV=2 | Back alignment and function description |
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| >sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13 PE=2 SV=1 | Back alignment and function description |
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| >sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13 PE=2 SV=1 | Back alignment and function description |
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| >sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13 PE=3 SV=1 | Back alignment and function description |
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| >sp|P54201|UBPA_DICDI Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum GN=ubpA PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 809 | ||||||
| 302143104 | 808 | unnamed protein product [Vitis vinifera] | 0.992 | 0.993 | 0.818 | 0.0 | |
| 224122870 | 807 | predicted protein [Populus trichocarpa] | 0.995 | 0.997 | 0.832 | 0.0 | |
| 359493906 | 794 | PREDICTED: ubiquitin carboxyl-terminal h | 0.976 | 0.994 | 0.813 | 0.0 | |
| 449458213 | 807 | PREDICTED: ubiquitin carboxyl-terminal h | 0.991 | 0.993 | 0.806 | 0.0 | |
| 449476716 | 793 | PREDICTED: ubiquitin carboxyl-terminal h | 0.975 | 0.994 | 0.805 | 0.0 | |
| 255569643 | 791 | Ubiquitin carboxyl-terminal hydrolase, p | 0.976 | 0.998 | 0.807 | 0.0 | |
| 224117294 | 809 | predicted protein [Populus trichocarpa] | 0.985 | 0.985 | 0.794 | 0.0 | |
| 357452445 | 835 | Ubiquitin carboxyl-terminal hydrolase [M | 0.990 | 0.959 | 0.760 | 0.0 | |
| 356517211 | 794 | PREDICTED: ubiquitin carboxyl-terminal h | 0.977 | 0.996 | 0.785 | 0.0 | |
| 297835016 | 797 | ubiquitin-specific protease 14 [Arabidop | 0.983 | 0.998 | 0.756 | 0.0 |
| >gi|302143104|emb|CBI20399.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1406 bits (3639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/811 (81%), Positives = 743/811 (91%), Gaps = 8/811 (0%)
Query: 4 MDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKT 63
MDLLRSNLSRVRIPEPTNRI+KQECCVSF TP+SEGGLF+D+++FLA+GKD V WN+EKT
Sbjct: 1 MDLLRSNLSRVRIPEPTNRIYKQECCVSFATPKSEGGLFIDMSTFLAFGKDCVDWNYEKT 60
Query: 64 GNPVYLHIKQTRKLVAPEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSY 123
GNPVYLHIKQT+KLV PEDRP KKPTLLAIGV+GGFDNNE EY+E H+IVILP YV+L +
Sbjct: 61 GNPVYLHIKQTKKLV-PEDRPLKKPTLLAIGVDGGFDNNEPEYEEAHNIVILPSYVSLPF 119
Query: 124 PSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWK 183
PSVELPEKVRLAVDAILMAEGAERKEQ+A WTADKK+ SAYAM+LQQIDNGVIIP SGWK
Sbjct: 120 PSVELPEKVRLAVDAILMAEGAERKEQLALWTADKKEISAYAMSLQQIDNGVIIPRSGWK 179
Query: 184 CAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGA 243
C+KCDK +NLWLNLTDGMILCGR+NWDGTGGNNHA+EHYKETGYPLAVKLGTIT+DLEGA
Sbjct: 180 CSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAIEHYKETGYPLAVKLGTITADLEGA 239
Query: 244 DVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDV 303
DVFSYPEDDSV+DPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQ+V
Sbjct: 240 DVFSYPEDDSVLDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEV 299
Query: 304 EPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNM 363
EPLFGPGYTGLVNLGNSCYLA+TMQV+FST +F +RYY + LKAAFE APADPTVDLNM
Sbjct: 300 EPLFGPGYTGLVNLGNSCYLASTMQVVFSTQSFHSRYYLSQSLKAAFETAPADPTVDLNM 359
Query: 364 QLTKLAHGLLSGKYSVPAQEK-DAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQ 422
QLTKLAHG+LSGKYS PA EK D A AA + +KQEGIPPRMFKAVIAASHPEFSSMRQ
Sbjct: 360 QLTKLAHGMLSGKYSFPASEKIDIANAAAPMSSSKQEGIPPRMFKAVIAASHPEFSSMRQ 419
Query: 423 QDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIP 482
QDALEFFLH +DQVERV++G PE+DP++SFKFGIEER+ CPSGKVAYNRR DYILSL IP
Sbjct: 420 QDALEFFLHLLDQVERVNAGHPELDPSRSFKFGIEERLFCPSGKVAYNRRGDYILSLNIP 479
Query: 483 LDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTAL 542
L EATNK++L AF KLK E+ +EGK+V+ +EIVRPRVPLEACL++FSAPEE+ FYSTAL
Sbjct: 480 LHEATNKDQLEAFNKLKAEKKAEGKEVSGDEIVRPRVPLEACLASFSAPEEVHGFYSTAL 539
Query: 543 KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPG 602
K KTTA K+AGLTSFPDYLVLHMRKFVME GWVPKKLDVYIDVPDIIDISHMRS+G+QPG
Sbjct: 540 KTKTTAVKTAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDISHMRSRGIQPG 599
Query: 603 EELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSH 662
EELLPE E +V+S K +AN++IV+QLVSMGFNHLHC+KAA+NTSNAGVEEAMNWLLSH
Sbjct: 600 EELLPEAVDEGKVESEKLLANEEIVAQLVSMGFNHLHCQKAAINTSNAGVEEAMNWLLSH 659
Query: 663 MDDPDIDMPLSQETQCAA----IDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIF 718
MDDPDID P+SQE + A +DQSKV+TL+SFGF E+++R AL+ASGGDIEKATDWIF
Sbjct: 660 MDDPDIDFPISQEAENAEALSFVDQSKVDTLISFGFQEDISRRALRASGGDIEKATDWIF 719
Query: 719 NNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDG 778
+NPDA++SSDMDA TSST ADAGLPDGGG+YRL G+VSHIGTSTQCGHYVAHI KDG
Sbjct: 720 SNPDAASSSDMDATTSSTPT--ADAGLPDGGGRYRLIGLVSHIGTSTQCGHYVAHIYKDG 777
Query: 779 RWAIFNDNKVGASVDPPKEMGYLYFFERLNS 809
RW IFND+KVGAS++PPK+MGYLYFFERL+S
Sbjct: 778 RWVIFNDDKVGASINPPKDMGYLYFFERLSS 808
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122870|ref|XP_002330384.1| predicted protein [Populus trichocarpa] gi|222871769|gb|EEF08900.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359493906|ref|XP_002284309.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449458213|ref|XP_004146842.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449476716|ref|XP_004154814.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255569643|ref|XP_002525787.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223534937|gb|EEF36623.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224117294|ref|XP_002317532.1| predicted protein [Populus trichocarpa] gi|222860597|gb|EEE98144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357452445|ref|XP_003596499.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355485547|gb|AES66750.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356517211|ref|XP_003527282.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297835016|ref|XP_002885390.1| ubiquitin-specific protease 14 [Arabidopsis lyrata subsp. lyrata] gi|297331230|gb|EFH61649.1| ubiquitin-specific protease 14 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 809 | ||||||
| TAIR|locus:2083440 | 797 | UBP14 "ubiquitin-specific prot | 0.983 | 0.998 | 0.700 | 1.09999999981e-314 | |
| RGD|1308438 | 858 | Usp5 "ubiquitin specific pepti | 0.699 | 0.659 | 0.503 | 3.8e-194 | |
| MGI|MGI:1347343 | 858 | Usp5 "ubiquitin specific pepti | 0.699 | 0.659 | 0.503 | 7.8e-194 | |
| UNIPROTKB|F1P9P5 | 868 | USP5 "Ubiquitin carboxyl-termi | 0.981 | 0.914 | 0.460 | 4e-193 | |
| UNIPROTKB|F1N3P2 | 858 | USP5 "Ubiquitin carboxyl-termi | 0.699 | 0.659 | 0.5 | 5.5e-193 | |
| UNIPROTKB|P45974 | 858 | USP5 "Ubiquitin carboxyl-termi | 0.699 | 0.659 | 0.496 | 9e-193 | |
| UNIPROTKB|F1SLU6 | 859 | USP5 "Ubiquitin carboxyl-termi | 0.699 | 0.658 | 0.497 | 3e-192 | |
| UNIPROTKB|E1C8W4 | 833 | USP5 "Ubiquitin carboxyl-termi | 0.978 | 0.950 | 0.455 | 5.3e-191 | |
| ZFIN|ZDB-GENE-040426-2584 | 860 | usp5 "ubiquitin specific prote | 0.817 | 0.768 | 0.405 | 1.9e-177 | |
| FB|FBgn0035402 | 827 | CG12082 [Drosophila melanogast | 0.878 | 0.859 | 0.413 | 4.6e-174 |
| TAIR|locus:2083440 UBP14 "ubiquitin-specific protease 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3018 (1067.4 bits), Expect = 1.1e-314, P = 1.1e-314
Identities = 565/806 (70%), Positives = 661/806 (82%)
Query: 4 MDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKT 63
M+LLRSNLSRV+IPEPT+RI+K ECC+SFDTPRSEGGLFVD+NSFLA+GKD+V WN+EKT
Sbjct: 1 MELLRSNLSRVQIPEPTHRIYKHECCISFDTPRSEGGLFVDMNSFLAFGKDYVSWNYEKT 60
Query: 64 GNPVYLHIKQTRKLVAPEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSY 123
GNPVYLHIKQTRK + PEDRP KKPTLLAIGV+GGFDNNE EY+E++SIVILP++V+L +
Sbjct: 61 GNPVYLHIKQTRKSI-PEDRPLKKPTLLAIGVDGGFDNNEPEYEESYSIVILPDFVSLPF 119
Query: 124 PSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWK 183
PSVELPEKVR+AVD ++ A GAERKEQVAAWTA+KK S +A+ LQQI +G++IPPSGWK
Sbjct: 120 PSVELPEKVRIAVDTVVNAVGAERKEQVAAWTAEKKLISEHALTLQQIKSGIVIPPSGWK 179
Query: 184 CAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGA 243
C+KCDK +NLWLNLTDGMILCGR+NWDGTGGNNHAVEHYKET YPLAVKLGTIT+DLE A
Sbjct: 180 CSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAYPLAVKLGTITADLEAA 239
Query: 244 DVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDV 303
DV+SYPEDDSV+DPLLA+HLA FGIDFSS+QKTEMTTAERELDQNTNFDWNRIQESG+++
Sbjct: 240 DVYSYPEDDSVLDPLLAEHLAHFGIDFSSMQKTEMTTAERELDQNTNFDWNRIQESGKEL 299
Query: 304 EPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNM 363
P+FGPGYTGLVNLGNSCYLAATMQ++FSTH+F +RY++ + LK AFE APADPT+DLNM
Sbjct: 300 VPVFGPGYTGLVNLGNSCYLAATMQIVFSTHSFISRYFSHQSLKMAFEMAPADPTLDLNM 359
Query: 364 QLTKLAHGLLSGKYSVPAQEKXXXXXXXXXXXXKQEGIPPRMFKAVIAASHPEFSSMRQQ 423
QLTKL HGLLSGKYS+PA +K +QEGIPPRMFK VIAASH EFSSMRQQ
Sbjct: 360 QLTKLGHGLLSGKYSMPATQKDATTGDP-----RQEGIPPRMFKNVIAASHAEFSSMRQQ 414
Query: 424 DALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPL 483
DAL+FFLH V +VER + P++DP++SFKFGIEE+I CPSGKV YN+R D ILSL IPL
Sbjct: 415 DALDFFLHLVGKVERASNTTPDLDPSRSFKFGIEEKILCPSGKVGYNKREDCILSLNIPL 474
Query: 484 DEATNKEELAAFQKLKMERISEGKDV-TNEEIVRPRVPLEACLSTFSAPEELPDFYXXXX 542
EATNK+EL AF K K + E D+ +++EIVRPRVPLEACL+ F++ E + D+Y
Sbjct: 475 HEATNKDELEAFHKQKAGKGLEENDMRSSDEIVRPRVPLEACLANFASSEPIEDYYSSAL 534
Query: 543 XXXXXXXXXXXXXXFPDYLVLHMRKFVMEAGWVPKKLXXXXXXXXXXXXSHMRSKXXXXX 602
FPDYLVLHMRKFVME GWVPKKL SHMRSK
Sbjct: 535 KGMTTAIKTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQPG 594
Query: 603 XXXXXXXXXXDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSH 662
+ ++S +PVAN++IV+QLVSMGF+ LHC+KAA+NTSNAGVEEAMNWLLSH
Sbjct: 595 EELLPDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH 654
Query: 663 MDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPX 722
MDDPDID P+S +T + IDQS V+TLLSFGF+E+VAR ALKASGGDIEKATDW+FNNP
Sbjct: 655 MDDPDIDAPISHQT--SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNPN 712
Query: 723 XXXXXXXXXXXXXXXQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAI 782
QTPA +GLPDGGGKY+LFGIVSH+GTS CGHYVAHILK+GRW I
Sbjct: 713 ASVSDMDVSSSNSA-QTPAQSGLPDGGGKYKLFGIVSHMGTSVHCGHYVAHILKEGRWVI 771
Query: 783 FNDNKVGASVDPPKEMGYLYFFERLN 808
FND+KVG S DPPK+MGY+YFF+RL+
Sbjct: 772 FNDDKVGISTDPPKDMGYVYFFQRLD 797
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| RGD|1308438 Usp5 "ubiquitin specific peptidase 5 (isopeptidase T)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1347343 Usp5 "ubiquitin specific peptidase 5 (isopeptidase T)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P9P5 USP5 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N3P2 USP5 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P45974 USP5 "Ubiquitin carboxyl-terminal hydrolase 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SLU6 USP5 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C8W4 USP5 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040426-2584 usp5 "ubiquitin specific protease 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0035402 CG12082 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q11119 | UBP14_SCHPO | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3427 | 0.9233 | 0.9638 | yes | no |
| P54201 | UBPA_DICDI | 3, ., 4, ., 1, 9, ., 1, 2 | 0.4180 | 0.9666 | 0.9342 | yes | no |
| Q8L6Y1 | UBP14_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.7580 | 0.9839 | 0.9987 | yes | no |
| P56399 | UBP5_MOUSE | 3, ., 4, ., 1, 9, ., 1, 2 | 0.4877 | 0.9814 | 0.9254 | yes | no |
| P45974 | UBP5_HUMAN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.4831 | 0.9814 | 0.9254 | yes | no |
| Q5R407 | UBP5_PONAB | 3, ., 4, ., 1, 9, ., 1, 2 | 0.4807 | 0.9814 | 0.9254 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.983 |
| 3rd Layer | 3.4.19.12 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00027571001 | RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (808 aa) | |||||||||
(Vitis vinifera) | |||||||||||
 | GSVIVG00010886001 | • | • | 0.452 | |||||||
 | GSVIVG00018640001 | • | • | 0.433 | |||||||
 | GSVIVG00010470001 | • | 0.400 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 809 | |||
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 1e-117 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-111 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 2e-40 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 2e-25 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 2e-21 | |
| pfam02148 | 63 | pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas | 2e-20 | |
| smart00290 | 50 | smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal H | 9e-17 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-12 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 6e-11 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-10 | |
| cd00194 | 38 | cd00194, UBA, Ubiquitin Associated domain | 3e-10 | |
| smart00165 | 37 | smart00165, UBA, Ubiquitin associated domain | 7e-09 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-08 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 3e-08 | |
| pfam00627 | 37 | pfam00627, UBA, UBA/TS-N domain | 3e-08 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 4e-08 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 5e-08 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 8e-08 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 1e-07 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-07 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 2e-07 | |
| cd00194 | 38 | cd00194, UBA, Ubiquitin Associated domain | 2e-06 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 2e-06 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 3e-06 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 6e-06 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-05 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 3e-05 | |
| pfam00627 | 37 | pfam00627, UBA, UBA/TS-N domain | 2e-04 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-04 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 4e-04 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 5e-04 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 6e-04 | |
| smart00165 | 37 | smart00165, UBA, Ubiquitin associated domain | 8e-04 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 0.002 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 0.002 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 0.002 |
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 373 bits (958), Expect = e-117
Identities = 214/832 (25%), Positives = 348/832 (41%), Gaps = 111/832 (13%)
Query: 4 MDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWN---- 59
S ++ + +P F++ECC F + E + V LN F ++ + H G +
Sbjct: 1 KSFSHSEMAEMVLPNLPAVRFREECCYCFRSIGDEHSISVCLNCFQSFCEKHRGIHLGTK 60
Query: 60 -FEKTGNPVYLHI-KQTRKLVAPEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPE 117
+T + + I K E+ +KK L N E ++ + +P
Sbjct: 61 SGCRTVHDIKETIADLGPKQENVEENNNKKIKL---------KNAELSEEDVEELRRVPR 111
Query: 118 YVTLSYPSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQ--QIDNGV 175
V ++ ++ + +A +++ W D++ T + N I+ G
Sbjct: 112 TVLSKSTDSDISSTALEKIERMEIAIKPGDEDERVLWR-DEEVTCVHGCNEGPSSIEMGN 170
Query: 176 IIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGT 235
I G KC+ CD + NLW+ L+ G + CGR + G GN HA+ HY+ET +PLAVKL +
Sbjct: 171 I---GGLKCSLCDLKTNLWVCLSCGYVGCGRMQY-GAEGNGHALSHYEETQHPLAVKLPS 226
Query: 236 ITSDLEGADVFSYPEDDSVVDPL---LAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFD 292
++ E D++ Y D + FGI+ + + E + + + +QN N++
Sbjct: 227 LSK--EDCDIYCYLCDSEIRSRYNSNENSVTIDFGINIADGKTEEKSLRKLQSEQNANWE 284
Query: 293 WNRIQESGQDVEPLFGPG-YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFE 351
+ + + + P Y GL+NLGNSCYL++ +Q + +E
Sbjct: 285 FLEKKRAPESKG-ESVPSPYVGLINLGNSCYLSSVIQSLVGYAVS------KEEFDLLQH 337
Query: 352 AAPAD---PTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKA 408
P L QL K LLS P E GI P FK
Sbjct: 338 FEICYMKNPLECLFCQLMK----LLSKMKETPDNE-------------YVNGISPLDFKM 380
Query: 409 VIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPS-GKV 467
+I HPEF QQDA EF L ++++ + T F+F +E R+SC V
Sbjct: 381 LIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYLIPPITSLFEFEVERRLSCSGCMDV 440
Query: 468 AYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLST 527
+Y+ + +L + I L+ N E + ++
Sbjct: 441 SYS--YESMLMICIFLEG--NDEPQDIRKSVEA--------------------------- 469
Query: 528 FSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDV-- 585
F P+ + ++ K K A++ + S P YL+L + ++ ++ + +KL I++
Sbjct: 470 FFLPDTI-EWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQ-NYKVEKLSDPIEMRS 527
Query: 586 PDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAV 645
D+I + SK E LLP+ EDE ++ N+ ++ QLV MGF +A
Sbjct: 528 DDMIKLGSFMSKFDPQTENLLPD---EDEAFTD----NQSLIRQLVDMGFPEEDAARALG 580
Query: 646 NTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQC----AAIDQSKVETLLSFGFSEEVARN 701
T N E AMNWL HMDDPD++ P +D+SK +LL G + + R
Sbjct: 581 ITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRK 640
Query: 702 ALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHI 761
AL D ++ W N+ D + + Q D G Y L ++ H
Sbjct: 641 ALMDMNTDSKRRVVWCINDDDGTFPE--PEVPNEEQQQKKDLG-YSTAKPYALTAVICHK 697
Query: 762 GTSTQCGHYVAHILKDG----RWAIFNDNKV--GASVDPPKEMGYLYFFERL 807
G S GHYV I K+G +W + ND K +SV+ K+ GY+Y F+R
Sbjct: 698 GDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKRC 749
|
Length = 749 |
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein | Back alignment and domain information |
|---|
| >gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|238116 cd00194, UBA, Ubiquitin Associated domain | Back alignment and domain information |
|---|
| >gnl|CDD|197551 smart00165, UBA, Ubiquitin associated domain | Back alignment and domain information |
|---|
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|238116 cd00194, UBA, Ubiquitin Associated domain | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|197551 smart00165, UBA, Ubiquitin associated domain | Back alignment and domain information |
|---|
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 809 | |||
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 100.0 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.97 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.93 | |
| PF02148 | 63 | zf-UBP: Zn-finger in ubiquitin-hydrolases and othe | 99.67 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.63 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 99.6 | |
| smart00290 | 50 | ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like | 99.11 | |
| PF00627 | 37 | UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma | 98.36 | |
| PF00627 | 37 | UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma | 98.31 | |
| cd00194 | 38 | UBA Ubiquitin Associated domain. The UBA domain is | 98.18 | |
| smart00165 | 37 | UBA Ubiquitin associated domain. Present in Rad23, | 98.15 | |
| smart00165 | 37 | UBA Ubiquitin associated domain. Present in Rad23, | 98.08 | |
| cd00194 | 38 | UBA Ubiquitin Associated domain. The UBA domain is | 98.07 | |
| smart00290 | 50 | ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like | 97.37 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 97.32 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 97.28 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 97.23 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 97.08 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 97.02 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 96.99 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 96.56 | |
| KOG2689 | 290 | consensus Predicted ubiquitin regulatory protein [ | 95.8 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 95.56 | |
| KOG0011 | 340 | consensus Nucleotide excision repair factor NEF2, | 95.08 | |
| PF02148 | 63 | zf-UBP: Zn-finger in ubiquitin-hydrolases and othe | 94.65 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 88.18 | |
| PF09416 | 152 | UPF1_Zn_bind: RNA helicase (UPF2 interacting domai | 87.87 | |
| KOG0011 | 340 | consensus Nucleotide excision repair factor NEF2, | 87.65 | |
| KOG1887 | 806 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 84.36 |
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-191 Score=1554.06 Aligned_cols=748 Identities=47% Similarity=0.878 Sum_probs=686.1
Q ss_pred CchhhhhhhhcCccCCCCCCCceeccccceecccCCCCCCcEEeccCccccCcchHhhhhhccCCcEEEEEEEEEecCCC
Q 003583 1 MNPMDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNPVYLHIKQTRKLVAP 80 (809)
Q Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~v~k~eC~~~f~~~~~~~gl~vcl~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (809)
|| |+.+..|++.+++|.++++||||||+||||||++++||||||+||+|||+.|+..|+.+|+|++||||+|++|++++
T Consensus 1 ~~-~~~~~~~~~~~~vp~~~~~i~kdeC~ycf~sp~~e~glyicl~~f~afg~~~v~~~f~~tg~~~yl~i~r~~k~k~~ 79 (763)
T KOG0944|consen 1 ED-MEALHSHMPTVVVPRASQVIYKDECAYCFDSPESEGGLYICLNCFLAFGREHVEEYFRKTGHSVYLHIARVKKIKEE 79 (763)
T ss_pred CC-ccchhhcCCceeecCCCCceehhhceeeccCCCCCCCEEeehhhhhhhhhHHHHHHHhhcCceEEEEeccccchhhc
Confidence 45 78889999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C---CCCCCCCceeeeeccCCCCCCccCceeeEEEEEecCCccccCCCCCCcH-HH--HHHHHHHHhccChhHHHHHHhh
Q 003583 81 E---DRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSYPSVELPE-KV--RLAVDAILMAEGAERKEQVAAW 154 (809)
Q Consensus 81 ~---~~~~~~~~kl~i~~~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~~w 154 (809)
. .+|+.|+|||+||++ +.+++.|.||++|+...+.+++..+++ .+ .+.+.+++.|.+..+++.+.+|
T Consensus 80 ~~~~~~p~~K~tkl~i~~d-------~e~~d~~~iv~~p~~~~~~i~n~~~~~~i~~~~e~i~a~~sa~~~~~k~~~~aW 152 (763)
T KOG0944|consen 80 GAEGAEPKRKITKLEIGED-------LECEDVYDIVVVPDDLEIAIKNIQLLPEIVSATEAIEAMLSAISPSRKDRVNAW 152 (763)
T ss_pred cCcCCCccccceeEEeccc-------cccceeEEEEEeccccccccCCccccHHHHHHHHHHHHHHhhcCcchhhhhhhh
Confidence 4 478899999999986 367889999999988888888755544 44 4668999999999999999999
Q ss_pred hhcCCCCCcccccccccCCCcccCCCCccccccCCCCCeEEecccCcccccCCcCCCCCCCchHhhHhhhcCccEEEeeC
Q 003583 155 TADKKQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLG 234 (809)
Q Consensus 155 ~~~~~~~c~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~~~v~lg 234 (809)
++|++..|.|..+|.|++++..+++++|+|+.|++++|||+||+||.|||||.||||.||||||+.||++|+||||||||
T Consensus 153 d~Evr~v~k~~~nl~q~dng~~~~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLg 232 (763)
T KOG0944|consen 153 DNEVRTVSKHANNLSQIDNGKRIPPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLG 232 (763)
T ss_pred hhheeeccCCCCChhhcccCcccCCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEec
Confidence 99998999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcEEEeccCCCcccchhHHHHHHhhccccccccccccchhhhhhhccccccccccccCCCccccccCCccccc
Q 003583 235 TITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGL 314 (809)
Q Consensus 235 tit~~~~~~~v~cy~cd~~v~d~~l~~~L~~~gi~~~~~~kteksl~el~~~~n~~~e~~~~~e~g~~l~p~~~~g~~GL 314 (809)
|||+| ++|||||.||++|.||+|++||+|||||+..|.||||+|.|+++++|..|+|.+++++|..++|++|||+|||
T Consensus 233 sIs~d--g~DvycY~cDd~v~dPnl~~hl~hfGId~~~m~kteksl~elel~~N~i~Ew~~~~esg~~l~p~~gpgytGl 310 (763)
T KOG0944|consen 233 SISPD--GADVYCYDCDDEVRDPNLESHLSHFGIDMAKMDKTEKSLVELELDQNRIWEWEALEESGAPLEPLFGPGYTGL 310 (763)
T ss_pred ccCCC--ccceeeecccccccCccHHHHHHhcCccHHHhccchhHHHHHHHHhhcccCceeeccCCCccccccCCCccce
Confidence 99998 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccccC
Q 003583 315 VNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTT 394 (809)
Q Consensus 315 ~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~~~ 394 (809)
+|||||||||||||+|+++|.|..+|+.. .++|.+.+.+|.++|.|||.||+++|.+|+||.|..+
T Consensus 311 ~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~---~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~----------- 376 (763)
T KOG0944|consen 311 INLGNSCYLNSVMQSLFSIPSFQRRYLEQ---ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMD----------- 376 (763)
T ss_pred eecCcchhHHHHHHHheecccHHHhhccc---cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCC-----------
Confidence 99999999999999999999999999865 5778888999999999999999999999999987332
Q ss_pred CCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEe-cCCCEeeeeec
Q 003583 395 DTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNRRL 473 (809)
Q Consensus 395 ~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~ 473 (809)
...+.+|+|.+|+.+||+.||+|++++||||+|||++||+.|++..+... .+|+++|+|.++.|++| .|.+|+|+.+.
T Consensus 377 ~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~-~nptd~frF~ve~Rv~C~~c~kVrYs~~~ 455 (763)
T KOG0944|consen 377 PSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL-PNPTDLFRFEVEDRVSCLGCRKVRYSYES 455 (763)
T ss_pred ccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC-CCHHHHHHhhhhhhhhhhccccccccchh
Confidence 12378999999999999999999999999999999999999998876432 68999999999999999 99999999999
Q ss_pred CeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeEEee
Q 003583 474 DYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAG 553 (809)
Q Consensus 474 ~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~~~ 553 (809)
.+.|.||||... .++.++++.+||++||.| .+++|+|++||.+..|+|+++
T Consensus 456 ~~~i~lpv~~~~----------------------------~v~~~v~~~~cleaff~p-q~~df~s~ac~~K~~a~kt~~ 506 (763)
T KOG0944|consen 456 EYLIQLPVPMTN----------------------------EVREKVPISACLEAFFEP-QVDDFWSTACGEKKGATKTTR 506 (763)
T ss_pred heeeEeeccccc----------------------------cccccCCHHHHHHHhcCC-cchhhhhHhhcCccccccccc
Confidence 999999998622 134568999999999999 666699999999999999999
Q ss_pred ccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhc
Q 003583 554 LTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSM 633 (809)
Q Consensus 554 i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~m 633 (809)
|++||+||+||++||.+. +|+++|+++.|++|+.|||+.|++.|+++||++||++.+.. .++.+|+..+.||.+|
T Consensus 507 ~ksfP~yLiiqv~rf~~~-dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~----~~~~~d~s~i~qL~~M 581 (763)
T KOG0944|consen 507 FKSFPDYLIIQVGRFTLQ-DWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPET----SEFAADRSVISQLVEM 581 (763)
T ss_pred cccCCceEEEEeeEEEec-CceeeeeccceecchhhchhhhhhcCCCCcccccCCcCccc----CccchhHHHHHHHHHc
Confidence 999999999999999995 99999999999999999999999999999999999987753 4588999999999999
Q ss_pred CCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCC--cccc--c-cccCChhhhhhhhcCCCCHHHHHHHHHHcCC
Q 003583 634 GFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL--SQET--Q-CAAIDQSKVETLLSFGFSEEVARNALKASGG 708 (809)
Q Consensus 634 gf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~--~~~~--~-~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~ 708 (809)
|||+++|+||++.|||+++|+||||||+||+||||++|+ |+.. + +..++++.+.++++|||++.||++||++++|
T Consensus 582 GFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~ 661 (763)
T KOG0944|consen 582 GFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNN 661 (763)
T ss_pred CCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999 5432 2 2379999999999999999999999999999
Q ss_pred ChhhhccccccCCCCCCCcccccccCCC---CCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEeeCCcEEEEeC
Q 003583 709 DIEKATDWIFNNPDASTSSDMDAATSST---AQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFND 785 (809)
Q Consensus 709 ~~~~a~dwlfs~~dd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk~~~W~~fND 785 (809)
|++||+||||+|+|+.-+......+++. .+.++.++ .+++++|+|+|||+|+|+|+++|||||||||+|+||+|||
T Consensus 662 nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~-~dg~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfND 740 (763)
T KOG0944|consen 662 NVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTG-KDGPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFND 740 (763)
T ss_pred cHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccC-CCCCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcc
Confidence 9999999999999932111111111111 12233333 8999999999999999999999999999999999999999
Q ss_pred ceeecccCCCCCceEEEEEEecC
Q 003583 786 NKVGASVDPPKEMGYLYFFERLN 808 (809)
Q Consensus 786 ~kV~~~~~~~~~~~Yi~~Y~R~~ 808 (809)
+||..+++|++++||||||+|++
T Consensus 741 eKv~~S~~ppK~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 741 EKVAASQEPPKDLGYVYLYTRIA 763 (763)
T ss_pred hhhhhccCChhhcceEEEEEecC
Confidence 99999999999999999999984
|
|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger | Back alignment and domain information |
|---|
| >PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] | Back alignment and domain information |
|---|
| >PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] | Back alignment and domain information |
|---|
| >cd00194 UBA Ubiquitin Associated domain | Back alignment and domain information |
|---|
| >smart00165 UBA Ubiquitin associated domain | Back alignment and domain information |
|---|
| >smart00165 UBA Ubiquitin associated domain | Back alignment and domain information |
|---|
| >cd00194 UBA Ubiquitin Associated domain | Back alignment and domain information |
|---|
| >smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation | Back alignment and domain information |
|---|
| >KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 809 | ||||
| 3ihp_A | 854 | Covalent Ubiquitin-Usp5 Complex Length = 854 | 0.0 | ||
| 2g43_A | 129 | Structure Of The Znf Ubp Domain From Deubiquitinati | 4e-48 | ||
| 2l80_A | 116 | Solution Structure Of The Zinc Finger Domain Of Usp | 1e-39 | ||
| 1vek_A | 84 | Solution Structure Of Rsgi Ruh-011, A Uba Domain Fr | 2e-22 | ||
| 1wiv_A | 73 | Solution Structure Of Rsgi Ruh-023, A Uba Domain Fr | 1e-19 | ||
| 2lbc_A | 126 | Solution Structure Of Tandem Uba Of Usp13 Length = | 4e-11 | ||
| 2dag_A | 74 | Solution Structure Of The First Uba Domain In The H | 1e-08 | ||
| 1whc_A | 64 | Solution Structure Of Rsgi Ruh-027, A Uba Domain Fr | 1e-07 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 1e-06 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 2e-06 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 3e-05 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 1e-04 |
| >pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 | Back alignment and structure |
|
| >pdb|2G43|A Chain A, Structure Of The Znf Ubp Domain From Deubiquitinating Enzyme Isopeptidase T (Isot) Length = 129 | Back alignment and structure |
| >pdb|2L80|A Chain A, Solution Structure Of The Zinc Finger Domain Of Usp13 Length = 116 | Back alignment and structure |
| >pdb|1VEK|A Chain A, Solution Structure Of Rsgi Ruh-011, A Uba Domain From Arabidopsis Cdna Length = 84 | Back alignment and structure |
| >pdb|1WIV|A Chain A, Solution Structure Of Rsgi Ruh-023, A Uba Domain From Arabidopsis Cdna Length = 73 | Back alignment and structure |
| >pdb|2LBC|A Chain A, Solution Structure Of Tandem Uba Of Usp13 Length = 126 | Back alignment and structure |
| >pdb|2DAG|A Chain A, Solution Structure Of The First Uba Domain In The Human Ubiquitin Specific Protease 5 (Isopeptidase 5) Length = 74 | Back alignment and structure |
| >pdb|1WHC|A Chain A, Solution Structure Of Rsgi Ruh-027, A Uba Domain From Mouse Cdna Length = 64 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
Score = 800 bits (2066), Expect = 0.0
Identities = 406/840 (48%), Positives = 546/840 (65%), Gaps = 42/840 (5%)
Query: 3 PMDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEK 62
+ L S L +R+P+ +R+ K EC SFDTP SEGGL++ +N+FL +GK +V +F K
Sbjct: 24 SEEALLSVLPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNK 83
Query: 63 TGNPVYLHIKQTRKLVAP------EDRPSKKPTLLAIGVEGGFDNNEA--EYDETHSIVI 114
TG VYLH+++TR+ D P KKPT LAIGVEGGFD +E E DE IVI
Sbjct: 84 TGQRVYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVI 143
Query: 115 LPEYVTLSYPSV-----ELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQ 169
LP+Y+ ++ + + ++V AV+A+L A+ A RK++V AW + +Q S +A +L+
Sbjct: 144 LPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSKHAFSLK 203
Query: 170 QIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPL 229
Q+DN IPP GWKC+KCD R+NLWLNLTDG ILCGRR +DG+GGNNHAVEHY+ETGYPL
Sbjct: 204 QLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPL 263
Query: 230 AVKLGTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNT 289
AVKLGTIT +GADV+SY EDD V+DP LA+HL+ FGID +QKT+ T E E+D N
Sbjct: 264 AVKLGTITP--DGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQ 321
Query: 290 NFD-WNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKA 348
W IQESG ++PLFGPGYTG+ NLGNSCYL + +QV+FS F +Y + L+
Sbjct: 322 RIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYV--DKLEK 379
Query: 349 AFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKA 408
F+ AP DPT D + Q+ KL HGLLSG+YS P E + Q+GI PRMFKA
Sbjct: 380 IFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKE-VQDGIAPRMFKA 438
Query: 409 VIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCP-SGKV 467
+I HPEFS+ RQQDA EFFLH ++ VER + + +P + F+F +EE+I C + KV
Sbjct: 439 LIGKGHPEFSTNRQQDAQEFFLHLINMVER--NCRSSENPNEVFRFLVEEKIKCLATEKV 496
Query: 468 AYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLST 527
Y +R+DYI+ L +P+D A NKEEL +++ K + +E + + E+VR +VP +CL
Sbjct: 497 KYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQ--AEEEKMALPELVRAQVPFSSCLEA 554
Query: 528 FSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPD 587
+ APE++ DF+STAL+AK+ A K+ SFPDYLV+ ++KF WVPKKLDV I++P+
Sbjct: 555 YGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPE 614
Query: 588 IIDISHMRSKGLQPGEELLPEGGPED--EVQSNKPVANKDIVSQLVSMGFNHLHCEKAAV 645
+DIS +R GLQPGEE LP+ P + P+ ++ ++ QLV MGF C KA
Sbjct: 615 ELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVY 674
Query: 646 NTSNAGVEEAMNWLLSHMDDPDIDMPL---------SQETQCAAIDQSKVETLLSFGFSE 696
T N+G E AMNW++SHMDDPD PL S + V T++S GFS
Sbjct: 675 YTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSR 734
Query: 697 EVARNALKASGGDIEKATDWIFNNPD-------ASTSSDMDAATSSTAQTPADAGLPDGG 749
+ A AL+A+ +E+A DWIF++ D S AA S + P + DG
Sbjct: 735 DQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGP 794
Query: 750 GKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGASVDPPKEMGYLYFFERLNS 809
GKY+LF +SH+GTST CGHYV HI K+GRW I+ND KV AS PPK++GY+YF++R+ S
Sbjct: 795 GKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS 854
|
| >2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129 | Back alignment and structure |
|---|
| >1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 84 | Back alignment and structure |
|---|
| >1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 84 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73 | Back alignment and structure |
|---|
| >1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73 | Back alignment and structure |
|---|
| >3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109 | Back alignment and structure |
|---|
| >2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83 | Back alignment and structure |
|---|
| >2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83 | Back alignment and structure |
|---|
| >1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Length = 64 | Back alignment and structure |
|---|
| >1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Length = 64 | Back alignment and structure |
|---|
| >2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Length = 64 | Back alignment and structure |
|---|
| >2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Length = 64 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Length = 64 | Back alignment and structure |
|---|
| >2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Length = 64 | Back alignment and structure |
|---|
| >2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Length = 102 | Back alignment and structure |
|---|
| >2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
| >2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Length = 118 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 47 | Back alignment and structure |
|---|
| >2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 47 | Back alignment and structure |
|---|
| >1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73 | Back alignment and structure |
|---|
| >1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73 | Back alignment and structure |
|---|
| >1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Length = 83 | Back alignment and structure |
|---|
| >1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Length = 83 | Back alignment and structure |
|---|
| >2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Length = 108 | Back alignment and structure |
|---|
| >1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Length = 58 | Back alignment and structure |
|---|
| >1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Length = 63 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 809 | ||||
| d2g45a1 | 113 | g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h | 3e-50 | |
| d1veka_ | 84 | a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress | 3e-31 | |
| d1veka_ | 84 | a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress | 2e-09 | |
| d2idaa1 | 102 | g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {R | 4e-25 | |
| d1wiva_ | 73 | a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress | 1e-23 | |
| d1wiva_ | 73 | a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress | 7e-08 | |
| d2uzga1 | 95 | g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy | 2e-23 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 4e-21 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 2e-09 | |
| d2crna1 | 51 | a.5.2.1 (A:8-58) Suppressor of T-cell receptor sig | 1e-20 | |
| d2crna1 | 51 | a.5.2.1 (A:8-58) Suppressor of T-cell receptor sig | 1e-08 | |
| d1whca_ | 64 | a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus | 5e-19 | |
| d1whca_ | 64 | a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus | 6e-10 | |
| d2cpwa1 | 51 | a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 | 4e-15 | |
| d2cpwa1 | 51 | a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 | 7e-09 | |
| d1wjia_ | 63 | a.5.2.1 (A:) Tudor domain containing protein 3, TD | 4e-15 | |
| d1wjia_ | 63 | a.5.2.1 (A:) Tudor domain containing protein 3, TD | 7e-12 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 2e-14 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 1e-08 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 1e-13 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-13 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 1e-12 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 7e-11 | |
| d1wgna_ | 63 | a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 | 2e-10 | |
| d1wgna_ | 63 | a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 | 5e-09 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 9e-10 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 8e-04 | |
| d1vg5a_ | 73 | a.5.2.1 (A:) Rhomboid family protein At3g58460 {Th | 2e-08 | |
| d1vg5a_ | 73 | a.5.2.1 (A:) Rhomboid family protein At3g58460 {Th | 2e-05 | |
| d1oqya1 | 41 | a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Hum | 6e-08 | |
| d1oqya1 | 41 | a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Hum | 1e-04 | |
| d1veja1 | 61 | a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculu | 3e-04 | |
| d2g3qa1 | 43 | a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL0 | 5e-04 | |
| d2daha1 | 41 | a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) | 0.001 | |
| d1vega_ | 83 | a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse | 0.001 | |
| d2bwba1 | 44 | a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharom | 0.001 | |
| d2dnaa1 | 50 | a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {M | 0.002 |
| >d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Zf-UBP domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 169 bits (429), Expect = 3e-50
Identities = 80/111 (72%), Positives = 94/111 (84%), Gaps = 2/111 (1%)
Query: 159 KQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHA 218
+Q S +A +L+Q+DN IPP GWKC+KCD R+NLWLNLTDG ILCGRR +DG+GGNNHA
Sbjct: 2 RQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHA 61
Query: 219 VEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGID 269
VEHY+ETGYPLAVKLGTIT D GADV+SY EDD V+DP LA+HL+ FGID
Sbjct: 62 VEHYRETGYPLAVKLGTITPD--GADVYSYDEDDMVLDPSLAEHLSHFGID 110
|
| >d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 84 | Back information, alignment and structure |
|---|
| >d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 84 | Back information, alignment and structure |
|---|
| >d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 102 | Back information, alignment and structure |
|---|
| >d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73 | Back information, alignment and structure |
|---|
| >d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73 | Back information, alignment and structure |
|---|
| >d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 64 | Back information, alignment and structure |
|---|
| >d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 64 | Back information, alignment and structure |
|---|
| >d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 63 | Back information, alignment and structure |
|---|
| >d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 63 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63 | Back information, alignment and structure |
|---|
| >d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73 | Back information, alignment and structure |
|---|
| >d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73 | Back information, alignment and structure |
|---|
| >d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
| >d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
| >d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 61 | Back information, alignment and structure |
|---|
| >d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Length = 43 | Back information, alignment and structure |
|---|
| >d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
| >d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 83 | Back information, alignment and structure |
|---|
| >d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 | Back information, alignment and structure |
|---|
| >d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 809 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d2g45a1 | 113 | Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum | 100.0 | |
| d2uzga1 | 95 | Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H | 99.78 | |
| d2idaa1 | 102 | Hypothetical protein RPA1320 {Rhodopseudomonas pal | 99.75 | |
| d1veka_ | 84 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis | 99.72 | |
| d1wiva_ | 73 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis | 99.61 | |
| d1whca_ | 64 | UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta | 99.45 | |
| d2crna1 | 51 | Suppressor of T-cell receptor signaling 2 (STS-2) | 99.43 | |
| d1wjia_ | 63 | Tudor domain containing protein 3, TDRD3 {Human (H | 99.21 | |
| d2cpwa1 | 51 | Cbl-interacting protein p70, STS1 {Human (Homo sap | 99.05 | |
| d1wjia_ | 63 | Tudor domain containing protein 3, TDRD3 {Human (H | 98.81 | |
| d1whca_ | 64 | UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta | 98.81 | |
| d1veka_ | 84 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis | 98.72 | |
| d2crna1 | 51 | Suppressor of T-cell receptor signaling 2 (STS-2) | 98.64 | |
| d1wiva_ | 73 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis | 98.63 | |
| d1vg5a_ | 73 | Rhomboid family protein At3g58460 {Thale cress (Ar | 98.6 | |
| d2cpwa1 | 51 | Cbl-interacting protein p70, STS1 {Human (Homo sap | 98.58 | |
| d1wgna_ | 63 | Ubiquitin-associated protein 1, UBAP1 {Human (Homo | 98.42 | |
| d1wgna_ | 63 | Ubiquitin-associated protein 1, UBAP1 {Human (Homo | 98.41 | |
| d1oqya1 | 41 | DNA repair protein Hhr23a {Human (Homo sapiens) [T | 98.32 | |
| d1vg5a_ | 73 | Rhomboid family protein At3g58460 {Thale cress (Ar | 98.31 | |
| d1oqya1 | 41 | DNA repair protein Hhr23a {Human (Homo sapiens) [T | 97.87 | |
| d2idaa1 | 102 | Hypothetical protein RPA1320 {Rhodopseudomonas pal | 97.82 | |
| d2g3qa1 | 43 | Endocytic protein Ede1, YBL047C {Saccharomyces cer | 96.79 | |
| d2g45a1 | 113 | Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum | 96.55 | |
| d2g3qa1 | 43 | Endocytic protein Ede1, YBL047C {Saccharomyces cer | 96.29 | |
| d1veja1 | 61 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 96.13 | |
| d2bwba1 | 44 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.22 | |
| d1vega_ | 83 | NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculu | 95.06 | |
| d2dnaa1 | 50 | Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus | 95.01 | |
| d1veja1 | 61 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 94.37 | |
| d2uzga1 | 95 | Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H | 93.46 | |
| d2dnaa1 | 50 | Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus | 93.32 | |
| d2bwba1 | 44 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.11 | |
| d2daha1 | 41 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d2daha1 | 41 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 91.32 | |
| d2cosa1 | 41 | Serine/threonine protein kinase LATS2 {Mouse (Mus | 90.38 | |
| d1z96a1 | 38 | UBA-domain protein mud1 {Schizosaccharomyces pombe | 87.91 | |
| d1oqya2 | 44 | DNA repair protein Hhr23a {Human (Homo sapiens) [T | 86.99 | |
| d1oqya2 | 44 | DNA repair protein Hhr23a {Human (Homo sapiens) [T | 86.31 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=422.04 Aligned_cols=289 Identities=21% Similarity=0.355 Sum_probs=242.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 89644434589804588999997442779999814782022100399999863899999999998139988971345554
Q 003583 308 GPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (809)
Q Consensus 308 g~g~~GL~NLGNTCYmNSvLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~~~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~ 387 (809)
.||++||.|+||||||||+||+|+++|+|+++++... ........++.++|.+++..|+.+
T Consensus 3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~-------~~~~~~~~~~~~~l~~lf~~l~~~------------ 63 (347)
T d1nbfa_ 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMP-------TEGDDSSKSVPLALQRVFYELQHS------------ 63 (347)
T ss_dssp SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSC-------CTTCCTTTCHHHHHHHHHHHHHHC------------
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCC-------CCCCCCCCHHHHHHHHHHHHHHCC------------
T ss_conf 9997298639965699999999984799999997077-------668864126999999999998657------------
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCEEEEEEEEE-CCC
Q ss_conf 202556799878889277999998009888876657789999999999998807999-999857501089789981-699
Q 003583 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-EVDPTKSFKFGIEERISC-PSG 465 (809)
Q Consensus 388 ~~~~~~~~~~~~~I~P~~l~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~-~~~i~~~F~~~l~~~i~C-~C~ 465 (809)
..++.|..+...++ .+.|..+.||||+|||.+||+.|+++..... .+.+.++|.|.+.+.++| .|+
T Consensus 64 ----------~~~~~~~~~~~~~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~ 131 (347)
T d1nbfa_ 64 ----------DKPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVD 131 (347)
T ss_dssp ----------SSCBCCHHHHHHTT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTSTTTTHHHHHHCEEEEEEEEESSSC
T ss_pred ----------CCCCCHHHHHHHHC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECEEEEEEEEECCCC
T ss_conf ----------99757199997623--000206778779999999999888887503334565501134789867807866
Q ss_pred CEEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC--CCCCCCC
Q ss_conf 87531105724651157853346689999998777552069877843336887469999852139844685--1178788
Q 003583 466 KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--FYSTALK 543 (809)
Q Consensus 466 ~v~~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~~~~~E~ie~--~~C~~C~ 543 (809)
..+.+.++++.|+|++|.. .++.+||..++.+|.+++ ..|..|+
T Consensus 132 ~~s~~~e~f~~l~L~i~~~----------------------------------~~~~~~l~~~~~~e~l~~~~~~~~~~~ 177 (347)
T d1nbfa_ 132 YRSDRREDYYDIQLSIKGK----------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH 177 (347)
T ss_dssp CEEEEEEEESSEEEECTTC----------------------------------CBHHHHHHHHTCCEEECGGGCEECSTT
T ss_pred CEEEEECCCCCCCCCCCCC----------------------------------CCHHHHHHHHCCHHEECCCCCCCCCCC
T ss_conf 1422322322331011233----------------------------------310356776412022414310024567
Q ss_pred CCCCEEEEEECCCCCCEEEEEEEEEEECCC-CEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 745346874033467515999866898159-4133030332278730265344789999987799999998546899788
Q 003583 544 AKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVA 622 (809)
Q Consensus 544 ~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP~~LdL~~y~~~~~~~~e~~l~~~~~~~~~~~~~~~~ 622 (809)
+...+.|+.+|.++|+||+|||+||.++.. +...|++..|.||..|||++|+....
T Consensus 178 ~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~----------------------- 234 (347)
T d1nbfa_ 178 GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTD----------------------- 234 (347)
T ss_dssp CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSCC-----------------------
T ss_pred CCEECCEEEEEEECCCHHEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCC-----------------------
T ss_conf 630121789998269800475100134223573101572476454413465323333-----------------------
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 67789999946999579889998808955899999865039999989999633223458902244451379999999999
Q 003583 623 NKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNA 702 (809)
Q Consensus 623 ~~~~~~~l~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~ddpd~~~p~~~~~~~~~~~~~~i~~l~~mgf~~~~a~~a 702 (809)
T Consensus 235 -------------------------------------------------------------------------------- 234 (347)
T d1nbfa_ 235 -------------------------------------------------------------------------------- 234 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEE--CCCE
Q ss_conf 99708973320110003999888765432467887899999999999309999988642467886479999954--7918
Q 003583 703 LKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK--DGRW 780 (809)
Q Consensus 703 L~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk--~~~W 780 (809)
.....+|+|+|||+|.|+ +++|||+||+|. +++|
T Consensus 235 -------------------------------------------~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W 270 (347)
T d1nbfa_ 235 -------------------------------------------PKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKW 270 (347)
T ss_dssp -------------------------------------------TTSCCEEEEEEEEEEEEE-TTEEEEEEEECTTSSSCC
T ss_pred -------------------------------------------CCCCCCEEEEEEEEECCC-CCCCEEEEEEECCCCCEE
T ss_conf -------------------------------------------457644056799984587-879989980613899989
Q ss_pred EEEECCEEECCCC--C---------------CCCCEEEEEEEECC
Q ss_conf 9982861100358--9---------------99740799998448
Q 003583 781 AIFNDNKVGASVD--P---------------PKEMGYLYFFERLN 808 (809)
Q Consensus 781 ~~fND~kV~~~~~--~---------------~~~~~Yiy~Y~R~~ 808 (809)
++|||++|+.+.. . ...+||||||+|.+
T Consensus 271 ~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~ 315 (347)
T d1nbfa_ 271 CKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES 315 (347)
T ss_dssp EEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGG
T ss_pred EEEECCCEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 999899608988999987515887655455778977999999637
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|