Citrus Sinensis ID: 003595

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------81
MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRLSSVLLLKIVFC
ccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccEEEEEcccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEcccccccccEEEEEccccccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccEEccccccccccHHHHHHHHccccEEEEccccccEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccEEEEEEEEccHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccc
ccccccEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccEEEEEEccccEEEEEEcHHcccccccccEEEEEEEccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccEEEEEEcccccccccEEEEEEEcccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccEEEcccccccccccHHHHHHHHccEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccHccEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccEEEEEEEccHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHccccHHHEEEHccccHHHHccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHcccccccccccccHcccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEccccEEEEEEEEccHHHHHHHHHHccccccccHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcc
mdadttvtltdpmdYKVEELLKEVHFARAPAITKLVDDTVSAVRKSIskipdafpvtadlapgfvrdigadkvefkfnkpktfkiggsysincvvkpavnvdlfvglpkecfhekdylnhryhaKRCLYLCVIKkhlksspsfdKVEWSAMQNEARKPVLVVYPavksveapgffvriIPTAASLFNIAKLNlkrnnvrafnqdgipratpkynssiledmflEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATsklwnrglyfppkgqigvskeeklqykeafpvvicdpsaqVNLAFRMTSVGFCELQDEAASTLQCMdkcgdggfeetfltkidfpakydyCVRLnlrghtevhalGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVtwrnspsewnienglavldrepllvgISVSSLEKLFRIvdigpnaenKEEALRFRKFWGEKaelrrfkdgtiaesTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLiediplkissvqpldsafrftsvfppephplanerhtvsrlhkltpsciqPLEVMIQLegsgnwpmdHVAIEKTKSAFLIKIGESLqnrwgmtcsateddadIFMSGYAFRLKILHERGLSLvksengnkakrvystdKILFIRGQHASMINglqgrypvfgpVVRVAKRWAASHLFSACLVEEAVELLVAYLFlkplpfnvpcsrvtGFLRLSSVLLLKIVFC
mdadttvtltdpmdykVEELLKEVHFarapaitklvdDTVSAVRKsiskipdafpvtadLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNvrafnqdgipratpkynssILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSllnqglvdrAKSIRvtwrnspsewnienglavldrePLLVGISVSSLEKLFRIVdigpnaenkeeALRFRKfwgekaelrrfkdgtiaestvweseqwTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLslvksengnkakrvystdKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRLSSVlllkivfc
MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGylisillsylvslDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRLSSVLLLKIVFC
***********PMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVF************TVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRLSSVLLLKIVF*
****TTVTLTDPMDYKVEELLKEVHFAR**AITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRN***********RATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLY****************YKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNS***************EPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSL************SLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLV**************DKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRLSSVLLLKIVFC
MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRLSSVLLLKIVFC
*****TVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRLSSVLLLKIVFC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRLSSVLLLKIVFC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query808 2.2.26 [Sep-21-2011]
Q6NRY2 1147 Nucleolar protein 6 OS=Xe N/A no 0.961 0.677 0.309 1e-100
Q8R5K4 1152 Nucleolar protein 6 OS=Mu yes no 0.940 0.659 0.309 5e-98
Q9H6R4 1146 Nucleolar protein 6 OS=Ho yes no 0.934 0.658 0.303 1e-95
Q5M7P5 1145 Nucleolar protein 6 OS=Xe yes no 0.892 0.629 0.320 2e-91
B4PR18 1199 Nucleolar protein 6 OS=Dr N/A no 0.871 0.587 0.280 1e-69
B4LWT7 1184 Nucleolar protein 6 OS=Dr N/A no 0.931 0.635 0.264 5e-68
B4NIM9 1202 Nucleolar protein 6 OS=Dr N/A no 0.939 0.631 0.255 2e-67
B4GFN6 1212 Nucleolar protein 6 OS=Dr N/A no 0.872 0.581 0.271 3e-67
Q295U7 1212 Nucleolar protein 6 OS=Dr yes no 0.872 0.581 0.270 4e-67
Q8IH00 1193 Nucleolar protein 6 OS=Dr yes no 0.872 0.590 0.271 1e-65
>sp|Q6NRY2|NOL6_XENLA Nucleolar protein 6 OS=Xenopus laevis GN=nol6 PE=2 SV=2 Back     alignment and function desciption
 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 258/833 (30%), Positives = 420/833 (50%), Gaps = 56/833 (6%)

Query: 10  TDPMDYKVEELLKEVHFA--RAPAITKLVDDTVSAVRKSISKIP-----DAFPVTADLAP 62
           T+ +  ++EELL+EV     R   I   + + ++A+  +I + P     D   +++ +  
Sbjct: 81  TNLLRMQIEELLQEVKLKEKRRKTIDGFLHE-INALLGTIPETPKTDLTDQSWLSSSIKV 139

Query: 63  GFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRY 122
            F++     K +F F  P + K+ GSY +   +KP +NVDL V +P+E    KD LN RY
Sbjct: 140 PFLQVPYQVKGKFSFLPPSSIKVVGSYLLGTCIKPEINVDLAVTMPQEILQVKDNLNQRY 199

Query: 123 HAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTA 182
             KR LYL  I  HL  +  F  V+++ M +   KP+L++ P  K  +     + I P  
Sbjct: 200 SRKRALYLAHIASHLTDNKLFSSVKFTYMNSNHLKPILLLRPQGKDEKLVTVRIHICPPP 259

Query: 183 ASLFNIAKLNLKRNNVRA-------FNQDGI-PRATPKYNSSILEDMFLEDNAEYVEKTI 234
              F +++L   +NNVR           +G+    TP YN++IL D+ LE +  ++    
Sbjct: 260 G-FFKLSRLYPNKNNVRTSWYTEQQTETEGVCDPPTPYYNNTILSDLTLEHHLHHLTNCA 318

Query: 235 SRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVV 294
           + +  + +A+ LLKVW  QR       C NG+L S+L+SYL+S +KIN  M   Q+LR  
Sbjct: 319 TDFPGMKDAIALLKVWLHQRQLDKGFGCFNGFLASMLISYLLSKNKINKVMSGYQVLRNT 378

Query: 295 LDFIATSKLWNRGLYFPPKGQIGVSKEEKL----QYKEAFPVVICDPSAQVNLAFRMTSV 350
           L F+AT+ L   G+       +    +  L     + EAF VV  DP   VNL   MT+ 
Sbjct: 379 LQFLATTDLTVNGI------TMATCSDSSLPSLPDFHEAFQVVFVDPMGVVNLCADMTAS 432

Query: 351 GFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLN----LRGHTEVHALG 406
            + ++Q EA+ +L+ +D     GF    +    F   +D+   L     L+G  +   L 
Sbjct: 433 KYRQIQFEASESLKVLDDTNVNGFHLLLMVPKPFVRTFDHVFHLTNVAKLQGTCKKMKLL 492

Query: 407 FCLDDECWRLYEQKVH---SLLNQGLVDRAKSIRVTWRNSPSEWNI-ENGLAVLDREPLL 462
             L D         +    S+L++GL  R   +  T  + P EWN+ E      D   + 
Sbjct: 493 NQLIDRGGDYLATALPYLLSVLSKGLGPRVSLLSHTLTHKP-EWNVGEEPAKHKDSGLVT 551

Query: 463 VGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQ-W 521
           VG+ +   E    ++D GP A++  EAL FR FWGEK+ELRRF+DG+I E+ VW     +
Sbjct: 552 VGLLLDP-ELYTNVLDKGPAADS-SEALDFRAFWGEKSELRRFQDGSICEAVVWTGGSLY 609

Query: 522 TRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFS--ASLLEAFEVLS 579
            +  + + I++Y+L  H ++ +  +    + LD  L  G +         S++++++ LS
Sbjct: 610 DKRKVPELIVKYLLELHANIPESCINYTGNALDCVLSRGRETSTEEEKMVSIIQSYDDLS 669

Query: 580 KRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEP--------HPLANERHTVSRLHKLTPS 631
           ++L  + D+PL I+SVQ      R+T VFPP P        H L  ++  +    K  P+
Sbjct: 670 RKLWNLNDLPLTITSVQGTHPCLRYTDVFPPLPVKPDWSSYHLLREKKCLIPNPEKPCPA 729

Query: 632 CIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSG 691
            + P++V+  +EGSG WP D  AI++ K+AF I++ E L ++  + C+ +    D++  G
Sbjct: 730 YVSPVKVICHMEGSGKWPQDKDAIKRLKAAFQIRLSELLSSQHQLLCNPSATHTDVYKDG 789

Query: 692 YAFRLKILHERGLSLVK---SENGNKAKRVYSTDKILFIRGQH----ASMINGLQGRYPV 744
           Y FR+++ + R    +K   +  G    +       L +   H    +S ++GL  ++P 
Sbjct: 790 YVFRVQVAYHREPQYMKEFVTPEGMLKYQDTEESMQLEMETNHLPHLSSTLHGLHQQHPA 849

Query: 745 FGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRL 797
           FG   R+AKRW  S L      EE ++LLVA+LFL P P++ P S + GFLR 
Sbjct: 850 FGGTSRLAKRWIQSQLLGDSFSEECLDLLVAHLFLHPAPYSPPSSALVGFLRF 902

Xenopus laevis (taxid: 8355)
>sp|Q8R5K4|NOL6_MOUSE Nucleolar protein 6 OS=Mus musculus GN=Nol6 PE=2 SV=2 Back     alignment and function description
>sp|Q9H6R4|NOL6_HUMAN Nucleolar protein 6 OS=Homo sapiens GN=NOL6 PE=1 SV=2 Back     alignment and function description
>sp|Q5M7P5|NOL6_XENTR Nucleolar protein 6 OS=Xenopus tropicalis GN=nol6 PE=2 SV=1 Back     alignment and function description
>sp|B4PR18|NOL6_DROYA Nucleolar protein 6 OS=Drosophila yakuba GN=Mat89Ba PE=3 SV=1 Back     alignment and function description
>sp|B4LWT7|NOL6_DROVI Nucleolar protein 6 OS=Drosophila virilis GN=Mat89Ba PE=3 SV=1 Back     alignment and function description
>sp|B4NIM9|NOL6_DROWI Nucleolar protein 6 OS=Drosophila willistoni GN=Mat89Ba PE=3 SV=1 Back     alignment and function description
>sp|B4GFN6|NOL6_DROPE Nucleolar protein 6 OS=Drosophila persimilis GN=Mat89Ba PE=3 SV=1 Back     alignment and function description
>sp|Q295U7|NOL6_DROPS Nucleolar protein 6 OS=Drosophila pseudoobscura pseudoobscura GN=Mat89Ba PE=3 SV=2 Back     alignment and function description
>sp|Q8IH00|NOL6_DROME Nucleolar protein 6 OS=Drosophila melanogaster GN=Mat89Ba PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
225430750 1057 PREDICTED: nucleolar protein 6-like [Vit 0.987 0.754 0.728 0.0
297735151 1066 unnamed protein product [Vitis vinifera] 0.987 0.748 0.722 0.0
255576530 1046 nucleolar RNA-associated protein, putati 0.976 0.754 0.719 0.0
356538192 1050 PREDICTED: nucleolar protein 6-like [Gly 0.987 0.76 0.700 0.0
356495417 1055 PREDICTED: nucleolar protein 6-like [Gly 0.987 0.756 0.693 0.0
357483427 1048 Nucleolar protein [Medicago truncatula] 0.977 0.753 0.669 0.0
297837003 1049 hypothetical protein ARALYDRAFT_474974 [ 0.986 0.759 0.679 0.0
145337144 1053 uncharacterized protein [Arabidopsis tha 0.986 0.756 0.674 0.0
449449451 1070 PREDICTED: nucleolar protein 6-like [Cuc 0.987 0.745 0.663 0.0
147792211 1040 hypothetical protein VITISV_009031 [Viti 0.915 0.711 0.654 0.0
>gi|225430750|ref|XP_002266705.1| PREDICTED: nucleolar protein 6-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1219 bits (3155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/806 (72%), Positives = 678/806 (84%), Gaps = 8/806 (0%)

Query: 1   MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADL 60
           MD+DT   + +PMD KV ELLKEV    + A TKLVDDTVSA++++I  IP+   VTAD 
Sbjct: 1   MDSDT---IMEPMDLKVRELLKEVQLDYSSATTKLVDDTVSAIKQAIDTIPEDLKVTADF 57

Query: 61  APGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNH 120
           AP FVRDIGADKVEF F KPK F+IGGSYSI CV KP V++DLFV LPKECFHEKDYLNH
Sbjct: 58  APQFVRDIGADKVEFNFKKPKLFEIGGSYSIRCVAKPDVDIDLFVRLPKECFHEKDYLNH 117

Query: 121 RYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIP 180
           RYHAKR LYLC+IKK+L SS    KVEWS +QNEARKPVLVVYPA++  E PG  VRIIP
Sbjct: 118 RYHAKRFLYLCIIKKYLNSSSFIRKVEWSTLQNEARKPVLVVYPAMELAEVPGLSVRIIP 177

Query: 181 TAASLFNIAKLNLKRNNVRAFNQD-GIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE 239
           TA SLF+I KLNLKRNNV +  QD   P+ATPKYNSSILEDMFLEDNAE+V++T   WKE
Sbjct: 178 TATSLFSILKLNLKRNNVCSLKQDESTPQATPKYNSSILEDMFLEDNAEFVKRTFLGWKE 237

Query: 240 LGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVS---LDKINNSMKALQILRVVLD 296
           LGEALILLKVWARQRSSIY +DCLNG+LIS+++SYL +    + INNSMK +QI RV LD
Sbjct: 238 LGEALILLKVWARQRSSIYAYDCLNGFLISVIMSYLATDSGRNLINNSMKPMQIFRVTLD 297

Query: 297 FIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQ 356
           FIATSKLWN GLYF  +  + +SKE   QY   FPVVI +  A  NLAFR+T  GF ELQ
Sbjct: 298 FIATSKLWNTGLYFKSQSLLNISKEVHYQYLRLFPVVISESLAHFNLAFRITGGGFLELQ 357

Query: 357 DEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRL 416
           DEA  TL C+ KC DGGFEE F+TKID+PAKYDYC+RLNL+G+++V+ALGFCLD+ECWR 
Sbjct: 358 DEAVLTLSCIGKCKDGGFEELFMTKIDYPAKYDYCMRLNLKGNSDVYALGFCLDEECWRS 417

Query: 417 YEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRI 476
           +EQKVH LL QGL DRAK IRV+W+N+ SE N+ENGL++ DREPLL+GISVSSLEK FR+
Sbjct: 418 FEQKVHFLLCQGLSDRAKFIRVSWKNATSECNVENGLSIFDREPLLIGISVSSLEKAFRV 477

Query: 477 VDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLL 536
           VD+GPNAE+K+EAL+FRKFWGEKAELRRFKDG IAESTVWES+QW RH I+K I EY+LL
Sbjct: 478 VDVGPNAEHKDEALKFRKFWGEKAELRRFKDGMIAESTVWESKQWERHTIIKRITEYLLL 537

Query: 537 RHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQ 596
           RHLSLS+ N+V IVDQLDFSL++G  D +SFS SLLEAFEVLSKRLHL++DIPLK+SSVQ
Sbjct: 538 RHLSLSERNIVHIVDQLDFSLVNGVGDSISFSGSLLEAFEVLSKRLHLLKDIPLKVSSVQ 597

Query: 597 PLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIE 656
           PLDSAFRFTSVFPPEPHPLANE+  V RL+KLT +CIQPLEVMIQLEGSGNWPMD VAIE
Sbjct: 598 PLDSAFRFTSVFPPEPHPLANEKSAVPRLNKLTSTCIQPLEVMIQLEGSGNWPMDDVAIE 657

Query: 657 KTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENG-NKA 715
           KTKSAFL++IGESLQN WGM C+ATE++ D+FMSGYAFRL+ILHERGLSL+  +NG N+ 
Sbjct: 658 KTKSAFLLRIGESLQNNWGMICTATEENVDVFMSGYAFRLRILHERGLSLLNRQNGSNQL 717

Query: 716 KRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVA 775
           K + S DK LF RGQH+SMINGLQG YP++GPVVR+AKRW ASHLFSACLVEEAVELLVA
Sbjct: 718 KHISSVDKELFTRGQHSSMINGLQGCYPIYGPVVRLAKRWVASHLFSACLVEEAVELLVA 777

Query: 776 YLFLKPLPFNVPCSRVTGFLRLSSVL 801
           YLFLKPLPF VPCSR++GFLR   +L
Sbjct: 778 YLFLKPLPFYVPCSRISGFLRFLRLL 803

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297735151|emb|CBI17513.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576530|ref|XP_002529156.1| nucleolar RNA-associated protein, putative [Ricinus communis] gi|223531380|gb|EEF33215.1| nucleolar RNA-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356538192|ref|XP_003537588.1| PREDICTED: nucleolar protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356495417|ref|XP_003516574.1| PREDICTED: nucleolar protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357483427|ref|XP_003612000.1| Nucleolar protein [Medicago truncatula] gi|355513335|gb|AES94958.1| Nucleolar protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297837003|ref|XP_002886383.1| hypothetical protein ARALYDRAFT_474974 [Arabidopsis lyrata subsp. lyrata] gi|297332224|gb|EFH62642.1| hypothetical protein ARALYDRAFT_474974 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145337144|ref|NP_176566.3| uncharacterized protein [Arabidopsis thaliana] gi|110741755|dbj|BAE98823.1| hypothetical protein [Arabidopsis thaliana] gi|332196029|gb|AEE34150.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449449451|ref|XP_004142478.1| PREDICTED: nucleolar protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147792211|emb|CAN72980.1| hypothetical protein VITISV_009031 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
TAIR|locus:2195523 1053 AT1G63810 "AT1G63810" [Arabido 0.986 0.756 0.666 6e-293
DICTYBASE|DDB_G0291438 1278 nol6 "Nrap family protein" [Di 0.492 0.311 0.282 2.2e-63
UNIPROTKB|B4LWT7 1184 Mat89Ba "Nucleolar protein 6" 0.935 0.638 0.260 1.1e-61
MGI|MGI:2140151 1152 Nol6 "nucleolar protein family 0.762 0.534 0.301 5.4e-61
ASPGD|ASPL0000040294 1107 AN3455 [Emericella nidulans (t 0.855 0.624 0.290 2.5e-59
RGD|1308033 1154 Nol6 "nucleolar protein 6 (RNA 0.763 0.534 0.295 1e-58
UNIPROTKB|B4K5S6 1187 Mat89Ba "Nucleolar protein 6" 0.853 0.581 0.262 3e-58
POMBASE|SPBC776.08c 1097 SPBC776.08c "Nrap (predicted)" 0.852 0.628 0.278 4.5e-57
UNIPROTKB|F1SE91 1145 NOL6 "Uncharacterized protein" 0.725 0.511 0.297 1.4e-56
UNIPROTKB|Q9H6R4 1146 NOL6 "Nucleolar protein 6" [Ho 0.761 0.536 0.296 1.8e-56
TAIR|locus:2195523 AT1G63810 "AT1G63810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2813 (995.3 bits), Expect = 6.0e-293, P = 6.0e-293
 Identities = 535/803 (66%), Positives = 642/803 (79%)

Query:     1 MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADL 60
             M+ADT    TD    KV +LLK+       ++ KLVDDTVS+++++I  IP+ F VT++L
Sbjct:     1 MEADTK---TDSRTLKVNDLLKDARLDY-DSLRKLVDDTVSSIKEAIDGIPEKFQVTSEL 56

Query:    61 APGFVRDIGADK-VEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLN 119
             AP FV DIGADK VEF F KP  F + GSYSI  + KP  +VDL V LPKECF+EKDY+N
Sbjct:    57 APSFVEDIGADKEVEFSFKKPNGFNLCGSYSICGMAKPDTSVDLLVHLPKECFYEKDYMN 116

Query:   120 HRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRII 179
             HRYHAKRCLYLCVI+KHL SS S +KV WS + NEARKPVLVV+PA K  + PGF +R+I
Sbjct:   117 HRYHAKRCLYLCVIEKHLLSSSSIEKVVWSTLHNEARKPVLVVFPAKKLDQFPGFSIRLI 176

Query:   180 PTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE 239
             P+A SLF++AKL++ RNNVR+   DG+P  TP YNSSILEDMFLE+N+E+++KT S WKE
Sbjct:   177 PSATSLFSVAKLSISRNNVRSVTADGVPEPTPTYNSSILEDMFLEENSEFLKKTFSEWKE 236

Query:   240 LGEALILLKVWARQRSSIYVHDCLNGXXXXXXXXXXXXXDKINNSMKALQILRVVLDFIA 299
             L +ALILLK+WARQRSSIYVHDCLNG              KIN ++ AL I RV LDFIA
Sbjct:   237 LSDALILLKIWARQRSSIYVHDCLNGFLISVILSYLATHSKINKALSALDIFRVTLDFIA 296

Query:   300 TSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEA 359
             TSKLW RGLY PP+ +I VSKEEK+Q++E FPVVICD S  VNLAFRMTSVGF ELQDEA
Sbjct:   297 TSKLWERGLYLPPQSEIRVSKEEKMQFRELFPVVICDSSTFVNLAFRMTSVGFLELQDEA 356

Query:   360 ASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQ 419
             + TL+CM+K  DGGFEE F+TKID+P KYD+C+RL L+G T V   GFCLD ECWRLYEQ
Sbjct:   357 SLTLKCMEKLRDGGFEEIFMTKIDYPVKYDHCIRLQLKGKTAVSLSGFCLDKECWRLYEQ 416

Query:   420 KVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDI 479
             KVHSLL +GL DRAKSIRV WRN+  +W++E+GL+VLDREPL +GISVSS EK +R VDI
Sbjct:   417 KVHSLLLEGLGDRAKSIRVVWRNTNQDWHVESGLSVLDREPLFIGISVSSTEKAYRTVDI 476

Query:   480 GPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHL 539
             GP+AENK EALRFRKFWGEK++LRRFKDG I+ESTVWE++QWT+HLI+K I+EY+L RHL
Sbjct:   477 GPDAENKIEALRFRKFWGEKSDLRRFKDGRISESTVWETQQWTKHLIMKQIVEYILKRHL 536

Query:   540 SLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLD 599
             SL+ +++VQ+VDQLDFSL +G KD +S S +L++A+EVLSK L  IE IPLK+SSVQ LD
Sbjct:   537 SLTSDDIVQLVDQLDFSLNYGGKDPISLSGNLVQAYEVLSKCLREIEGIPLKVSSVQSLD 596

Query:   600 SAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTK 659
             SA RFTSVFPPEPHP+A E+    RL KL PSCI  +EVMIQLEGSGNWPMD +A+EKTK
Sbjct:   597 SALRFTSVFPPEPHPVACEKIDSRRLQKLIPSCIPAMEVMIQLEGSGNWPMDDLAVEKTK 656

Query:   660 SAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENG-NKAKRV 718
             SAFL+KI ESLQN  G+ C+ATED+ D+F+ GYAFRL+ILHERGLSLVK E G +  K V
Sbjct:   657 SAFLLKIAESLQNVKGIPCTATEDNVDVFIGGYAFRLRILHERGLSLVKREIGVDPVKHV 716

Query:   719 YSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLF 778
              STDK+LFIR QHASMINGLQGR+PV+ PV R+AKRW ++HLFS CL EEA+ELLVAYLF
Sbjct:   717 SSTDKMLFIRSQHASMINGLQGRFPVYAPVARLAKRWVSAHLFSGCLAEEAIELLVAYLF 776

Query:   779 LKPLPFNVPCSRVTGFLRLSSVL 801
             L PLP  VP SR+ GFLR   +L
Sbjct:   777 LTPLPLGVPSSRINGFLRFLRLL 799
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0291438 nol6 "Nrap family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|B4LWT7 Mat89Ba "Nucleolar protein 6" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
MGI|MGI:2140151 Nol6 "nucleolar protein family 6 (RNA-associated)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040294 AN3455 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
RGD|1308033 Nol6 "nucleolar protein 6 (RNA-associated)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B4K5S6 Mat89Ba "Nucleolar protein 6" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
POMBASE|SPBC776.08c SPBC776.08c "Nrap (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1SE91 NOL6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H6R4 NOL6 "Nucleolar protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024923001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (1083 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018070001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)
   •    0.453
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •    0.444
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •    0.434
GSVIVG00038815001
SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)
   •    0.432
GSVIVG00036355001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)
   •    0.424
GSVIVG00021349001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)
   •    0.424
GSVIVG00025446001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1799 aa)
   •    0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
pfam03813 929 pfam03813, Nrap, Nrap protein 0.0
>gnl|CDD|217744 pfam03813, Nrap, Nrap protein Back     alignment and domain information 
 Score =  588 bits (1517), Expect = 0.0
 Identities = 242/761 (31%), Positives = 358/761 (47%), Gaps = 119/761 (15%)

Query: 88  SYSINCVVK--PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSS-PSFD 144
           S+++   +K    ++VDL V +PKE F EKDYLN+RY  KR  YL  +  HLK       
Sbjct: 1   SFALKTGIKQPKGLSVDLAVTMPKELFQEKDYLNYRYFHKRAFYLAYLAAHLKKKLDLDL 60

Query: 145 KVEWSAMQNEARKPVLVVYPAVKSVEA---PGFFVRIIPTA-ASLFNIAKLNLKRNNVR- 199
           K+ +  +  +  +PVLV+ P  K         F +R+IP A   LF   KL   +NN+R 
Sbjct: 61  KISYEYLNGDPLRPVLVLEPKTKKDSDFTKSKFSIRLIPAAPDGLFPPKKLLPDKNNIRP 120

Query: 200 -AFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQR--SS 256
            + + +     TP YNSS+L D  LE   + + KT    +   +A IL +VW RQR  SS
Sbjct: 121 ASDDDEAELPPTPFYNSSVLSDSTLEPYLKLLYKTKKSCEAFKDACILGRVWLRQRGFSS 180

Query: 257 IYVHDCLNGYLISILLSYLVSLD------KINNSMKALQILRVVLDFIATSKLWNRGLYF 310
            +      G+  ++L++ L+          +  S+ + Q+ +  + F+AT+ L    L  
Sbjct: 181 SFSQGGFGGFEWAVLMALLLQGGGLNGNKILLKSLSSYQLFKATIQFLATTDLTTGPLSL 240

Query: 311 PPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCG 370
                     E K  +      V  D S  +N+  +MT   +  L+ EA  TL  ++   
Sbjct: 241 SS----ASESESKYIFFGFDTPVFFDGSRGLNILAKMTPWSYRRLRHEAKETLDLLNDSV 296

Query: 371 DGGFEETFLTKIDFP-AKYDYCVRLN-------LRGHTEVHALGFCLDDECWRLYEQKVH 422
           D  F+  FLTK D P  ++D  +RLN            ++  + F            KV+
Sbjct: 297 DDQFDPIFLTKSDEPPLRFDLILRLNPEELIDSFGSLEKIRFIKFENFLL------NKVY 350

Query: 423 SLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPN 482
            +L + L DR K I ++  +  S W IE          + VG+ ++  E+ +R+VD GP+
Sbjct: 351 EVLKKALGDRVKLIHIS-ESPSSPWPIEKKKPTKKTSSISVGLLLNP-EEAYRLVDKGPS 408

Query: 483 AENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLS 542
           AE+KEEA  FR FWGEKAELRRFKDG+I ES VW S   +  LI++ I+ Y+L RHLS+ 
Sbjct: 409 AEDKEEAAEFRSFWGEKAELRRFKDGSITESVVWSS--TSSRLIVRQIVRYILKRHLSIP 466

Query: 543 KENVVQIVDQLDFSLLHGAK------DLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQ 596
            +++    D+ D  L            L SF   L+ AF+ L K L  +ED+PL      
Sbjct: 467 SDDITYSGDEFDQLLPLPGALGQKTTSLSSFQN-LIRAFDSLEKSLRDLEDLPL------ 519

Query: 597 PLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIE 656
                                                         E SG WP +  AI+
Sbjct: 520 ----------------------------------------------ESSGKWPDELEAIQ 533

Query: 657 KTKSAFLIKIGESLQNRWGM------------TCSATEDDADIF-MSGYAFRLKILHERG 703
           KTK+AFL+KIGE L+   G               +      D+    GY FRL+ILHER 
Sbjct: 534 KTKTAFLLKIGEKLEASSGSEYKSRVGLENSVPPNLNNAFLDVLTPEGYGFRLRILHERE 593

Query: 704 LSLVKSE--NGNKAKR------VYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRW 755
            +L++ +    N   +      + + ++   I  +H   I+ L  R+P++ P VR+AKRW
Sbjct: 594 ETLLERQVKTANPVTKQEAADALSAFERRFQILPRHTRAISTLCTRFPLYSPTVRLAKRW 653

Query: 756 AASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLR 796
             SHL    L EE +ELLVA +FL+P P++ P S  TGFLR
Sbjct: 654 LDSHLLLGHLPEELIELLVAKVFLQPYPWDTPSSVETGFLR 694

Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript. Length = 929

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 808
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 100.0
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 100.0
PTZ00418593 Poly(A) polymerase; Provisional 99.75
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.71
KOG2245562 consensus Poly(A) polymerase and related nucleotid 99.7
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.28
TIGR03671408 cca_archaeal CCA-adding enzyme. 98.98
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 98.95
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 98.47
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 98.14
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 97.15
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 96.74
KOG1906514 consensus DNA polymerase sigma [Replication, recom 95.83
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 95.24
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 95.12
KOG20541121 consensus Nucleolar RNA-associated protein (NRAP) 94.52
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 93.86
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 92.42
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 91.72
PRK13300 447 tRNA CCA-pyrophosphorylase; Provisional 89.24
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 86.22
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 85.8
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information 
Probab=100.00  E-value=2.4e-184  Score=1673.81  Aligned_cols=698  Identities=42%  Similarity=0.657  Sum_probs=624.6

Q ss_pred             eeccccccC--CCCceeEEEecCccccCcccccccchhhhHHhHHHHHHHhh--ccCCCCCcEEEeccCCCCceeeEEEE
Q 003595           88 SYSINCVVK--PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHL--KSSPSFDKVEWSAMQNEARKPVLVVY  163 (808)
Q Consensus        88 S~~l~t~~k--~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L--~~~~~~~~v~~~~~~~d~~kPil~l~  163 (808)
                      ||+++|++|  ++.+|||+||||++|||+|||||||||+|||+|||+||++|  ++.+...+++|+++|||++||||+|+
T Consensus         1 S~~l~t~~k~~~~~~VDl~v~mP~~~fq~KDyln~RY~~KRA~YLa~iA~~L~~~~~~~~~~v~~~~~~gd~~kPil~l~   80 (972)
T PF03813_consen    1 SYALKTMIKSKPNLTVDLAVEMPKSLFQEKDYLNYRYFHKRALYLAYIAAHLQKKKSKLFVDVSFEYLNGDPLKPILVLR   80 (972)
T ss_pred             CcccccccccCCCCeeEEEEeCChhhcCchhhccchHHHHHHHHHHHHHHHHhhhccccceeEEEEeCCCCCCCCeEEEE
Confidence            899999999  88999999999999999999999999999999999999999  45577899999999999999999999


Q ss_pred             eCCCCC----CCCCeEEEEEecCC-CcccccccCcccCCccCCCCC----CCCCCCCCcchhhhhccChHHHHHHHHHHh
Q 003595          164 PAVKSV----EAPGFFVRIIPTAA-SLFNIAKLNLKRNNVRAFNQD----GIPRATPKYNSSILEDMFLEDNAEYVEKTI  234 (808)
Q Consensus       164 p~~~~~----~~~~~~iRi~~~~~-~~F~~~rl~P~rnnvR~~~~~----~~~~pTP~YNssil~D~~~~~~l~~l~~~~  234 (808)
                      |.++..    .+.+|+||||||+| ++||++||.|+|||||+....    ..++|||+||++||+||++.+|+++|++++
T Consensus        81 p~~~~~~~~~~~~~~~iRi~~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~~~~~pTP~YNssIL~D~~~~~~l~~l~~~~  160 (972)
T PF03813_consen   81 PKGKKDSDDFSKTKFRIRIIPSIPSDTFPLSRLAPSRNNVRPSWFDEEDSSSLPPTPHYNSSILEDMLMEEHLKYLHEAS  160 (972)
T ss_pred             ECCccccccccCCcEEEEEEecCCcccCCHHhcCCCCCccCcCcccccccCCCCCCCcchHHHHHHHhHHHHHHHHHHHH
Confidence            987643    24679999999976 999999999999999986532    257999999999999999999999999999


Q ss_pred             hChHHHHHHHHHHHHHHHhcCCCcCC--CCchHHHHHHHHHHHhhc------cccCCCCcHHHHHHHHHHHHhcCCCCCC
Q 003595          235 SRWKELGEALILLKVWARQRSSIYVH--DCLNGYLISILLSYLVSL------DKINNSMKALQILRVVLDFIATSKLWNR  306 (808)
Q Consensus       235 ~~~~~f~dA~~LlKvWl~QRg~~~~~--~gf~gf~~s~l~a~Ll~~------~~l~~~mSsyQifr~~l~fLa~~d~~~~  306 (808)
                      ++||+|+|||+||||||+|||++++.  ||||||+|+|+|+||+++      ++++++||||||||++|+|||++||+++
T Consensus       161 ~~~p~f~dA~iLlkvWl~QRg~~~~~~~~Gf~~f~~s~lla~Ll~~g~~~~~~~l~~~mSsyQlFr~~l~fLA~~d~~~~  240 (972)
T PF03813_consen  161 KSSPAFRDACILLKVWLRQRGFGSGISQGGFGGFEWSMLLAYLLQGGGRNGKKKLSKSMSSYQLFRAVLQFLATTDLSKK  240 (972)
T ss_pred             hcCHHHHHHHHHHHHHHhcCCCCcccCCCCcchHHHHHHHHHHHcCCCccCCcccCCCCCHHHHHHHHHHHHhccccccC
Confidence            99999999999999999999999988  999999999999999999      9999999999999999999999999999


Q ss_pred             ceeecCCCCCCCChhHHHhhhhcCCEEEeCCCCceeeccCCCHHHHHHHHHHHHHHHHhhhhcCCCccccccccc-cccc
Q 003595          307 GLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTK-IDFP  385 (808)
Q Consensus       307 ~i~~~~~~~~~~~~~~~~~~~~~fpvvf~D~sg~~Nl~~~~t~~~~~~L~~eA~~tl~~Ld~~~~d~F~~lFl~~-~~~~  385 (808)
                      |++|+..++   +.+...+|++.|++||+|++|++|||++||.|+|++||+||+.|+++||+...|+|+++||++ .++.
T Consensus       241 ~l~~~~~~~---~~~~~~~~~~~~~~vf~D~sg~~Nl~~~ms~~s~~~L~~eA~~tl~lL~~~~~d~F~~lFl~~~~~~~  317 (972)
T PF03813_consen  241 PLFFKSSSD---STESLEEFHSAFDPVFVDPSGGLNLLAKMSPSSYEELQHEAKLTLELLDDSSDDGFDSLFLTKVDPPA  317 (972)
T ss_pred             ceEEecCCC---ccchhhhhhccCCeEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHHHhccccccchhhhhcccCCccc
Confidence            999988754   345677899999999999999999999999999999999999999999999999999999999 5677


Q ss_pred             ccCcEEEEeecCCcccccccccCCchhhHH-HHHHHHHHHHHhhhccccceEEEEecCCCCcccccCCCCcCCCCceEEE
Q 003595          386 AKYDYCVRLNLRGHTEVHALGFCLDDECWR-LYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVG  464 (808)
Q Consensus       386 ~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~lL~~aLgdR~~~i~v~~~~~~~~w~i~~~~~~~~~~~i~vG  464 (808)
                      .+||++++|...............+...+. .+.+.|+++|+||||||+++|++. .++.++|++++.++......|+||
T Consensus       318 ~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lL~raLgdR~~~i~v~-~~~~~~w~i~~~~~~~~~~~l~vG  396 (972)
T PF03813_consen  318 LRFDHVLRISPDSLLSSFSPDESLDFLSFSNYLLRKIYRLLKRALGDRAKLIRVL-RPSQPPWSISSKPPKSKPKTLTVG  396 (972)
T ss_pred             ccCCEEEEEcchhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHeEEEe-CCCCCCcccCCCCCCCCCceEEEE
Confidence            899999999322111111111111222232 477899999999999999999998 667899999998776555589999


Q ss_pred             EEeCCccccchhcccCCCCCCHHHHHHHHhhhcCcccccccCCCCeEEEEecCCCcccccccHHHHHHHHHHhccCCCCC
Q 003595          465 ISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKE  544 (808)
Q Consensus       465 l~l~~~~~a~r~vd~GP~add~~ea~~FR~FWG~KsELRRFkDGsI~EsVvW~~~~~~r~~I~~~Iv~~iL~~H~~i~~~  544 (808)
                      ++| ||++|+|+||+||+|||++||++||+|||+||||||||||||+|||||+.  .+|+.||+|||+|||++|++++.+
T Consensus       397 l~l-n~~~~~r~vd~GP~a~d~~ea~~FR~FWG~KsELRRFkDGsI~EsVvWs~--~~~~~I~~~Iv~yiL~~H~~~~~~  473 (972)
T PF03813_consen  397 LIL-NPENAFRLVDRGPSAEDKEEAAAFREFWGEKSELRRFKDGSICESVVWSS--AERRLIPEQIVRYILQRHLKIPSD  473 (972)
T ss_pred             EEE-chhhceeeeeeCcCCcCcHHHHHHHHHhCchhhhcccCCCCEEEEEecCC--CCCCchHHHHHHHHHHHhcCCccc
Confidence            999 59999999999999998899999999999999999999999999999954  678999999999999999999999


Q ss_pred             cEEEeccccchhcccC----CCCccchHHHHHHHHHHHHHHHhccCCCCeeeeecccCCcccccccCCCCCCCCCccccc
Q 003595          545 NVVQIVDQLDFSLLHG----AKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERH  620 (808)
Q Consensus       545 ~i~~~~~~~d~~l~~~----~~~~~~~~~~~~~af~~L~k~Lr~L~~LPL~I~~V~p~sp~lRytsv~pP~p~~~~~~~~  620 (808)
                      +|.+.++++|..+...    ......++.++++||++|+|.||+|+||||+|++|+|+||+|||||||||.|+.      
T Consensus       474 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~af~~L~k~lr~L~~LPL~I~~v~p~sp~lRyts~~pp~p~~------  547 (972)
T PF03813_consen  474 SISFIGDQFDSLLPLPGSGSSPTDEESFQSVMRAFDELEKDLRSLEDLPLSITSVQPASPALRYTSVFPPVPHA------  547 (972)
T ss_pred             eEEeehhhhhhhhcCccccCCCCchHHHHHHHHHHHHHHHHHhcCccCCcceeeeccCCHhhhcCCCCCCCCcc------
Confidence            9999999999866421    223356789999999999999999999999999999999999999999999872      


Q ss_pred             cccccCCCCCCccCceEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccC------------CeeeecCCccccc
Q 003595          621 TVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWG------------MTCSATEDDADIF  688 (808)
Q Consensus       621 ~~~~~~~~~p~~~~p~~vvlqfE~SgkWPddl~AIq~~K~AF~lkiae~L~~~~~------------~~~~v~~d~ldV~  688 (808)
                              ++.|++|++|+||||+|||||||++|||++|+||++||||.|+++++            +.+.++.+++||+
T Consensus       548 --------~~~~~~p~~vvl~fE~S~kWPddl~AI~~~K~Af~lkiae~L~~~~~~~~~~~v~~~~~~~~~~~~~~ldV~  619 (972)
T PF03813_consen  548 --------VPRYIPPIEVVLQFESSGKWPDDLEAIQKTKTAFLLKIAEELEKQYGDGIKARVGLDNSLSPIANQAFLDVL  619 (972)
T ss_pred             --------ccCCCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCcceeeecccccccceeccceEEEE
Confidence                    56899999999999999999999999999999999999999997766            4555566689998


Q ss_pred             c-cceeEEEEEeccchhhHHhhhc--cccc---c--cccc-hhhhHHHhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 003595          689 M-SGYAFRLKILHERGLSLVKSEN--GNKA---K--RVYS-TDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASH  759 (808)
Q Consensus       689 ~-~G~~FRl~I~~~rE~~Ll~~~~--~~~~---~--~~~~-~~~~~~~~p~h~~~i~~l~~r~pafs~tvRLaKRW~~sh  759 (808)
                      + +||+||++|+|+||++||+++.  .+..   .  .... .+++.++.|+||++|++||+|||+|||||||+|||++||
T Consensus       620 ~~~G~~FRl~I~~~rE~~Ll~~~~~~~~~~~k~~~~~~~~~~~~~~~~~p~h~~~i~~l~~~~p~fs~tvRL~KrW~~sh  699 (972)
T PF03813_consen  620 YPEGYVFRLRIYHDREETLLKRQLKTEDGQLKQEATEALASLERRFIHLPKHTSAIHGLHTRFPSFSPTVRLAKRWLSSH  699 (972)
T ss_pred             ecCccEEEEEEecchhHHHHHHhhcccCcccchhhhHHHHHHHHHHHhhHHHHHHHHHHHhhCCchhHHHHHHHHHHHhc
Confidence            8 9999999999999999999885  2211   1  1112 234455679999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHhcccc
Q 003595          760 LFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRLSSVLLLKIV  806 (808)
Q Consensus       760 lLs~hi~~E~vELLva~vfl~p~p~~~P~S~~~GFlRfL~lLa~~~~  806 (808)
                      ||++||+||+||||||++|++|+||.+|+|+++||+|||+|||+|..
T Consensus       700 lLs~~i~~E~vELlva~vfl~~~p~~~P~S~~~GFlRfL~lLs~~dW  746 (972)
T PF03813_consen  700 LLSGHISEEAVELLVASVFLSPAPWSPPSSPQTGFLRFLHLLSTWDW  746 (972)
T ss_pred             cCcccCCHHHHHHHHHHHhcCCCCCCCCCCHhHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999864

In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 9e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.5 bits (143), Expect = 4e-09
 Identities = 109/658 (16%), Positives = 188/658 (28%), Gaps = 208/658 (31%)

Query: 99  VNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPS--------FDKVEWSA 150
           V  D FV    +C   +D        +          H+  S          F  +    
Sbjct: 24  VFEDAFVD-NFDCKDVQDMPKSILSKEEI-------DHIIMSKDAVSGTLRLFWTLL--- 72

Query: 151 MQNEARKPVLVVYPAVKSVEAP--GFFVRII------PTAASLFNIAKLNLKRNNVRAFN 202
                 K   +V   V+ V      F +  I      P+  +   I + +   N+ + F 
Sbjct: 73  -----SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 203 QDGIPRATPKYNSSILEDMFLEDN-AEYVE--------KTISRWKEL-GEALILLKVWAR 252
           +  + R  P      L    LE   A+ V         KT      +  +          
Sbjct: 128 KYNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTW-----VALDVC-------- 171

Query: 253 QRSSIYVHDCLNG--YLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYF 310
              S  V   ++   + ++     L + +     ++ LQ L   +D   TS+  +     
Sbjct: 172 --LSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDH---SS 221

Query: 311 PPKGQIGVSKEEKL------QYKEAFPVV--ICDPSAQVNLAFRMTSVGFCELQDEAAST 362
             K +I   + E         Y+    V+  + +  A  N AF                 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WN-AF----------------N 263

Query: 363 LQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVH 422
           L C          +  LT           V   L   T  H     LD     L   +V 
Sbjct: 264 LSC----------KILLT------TRFKQVTDFLSAATTTH---ISLDHHSMTLTPDEVK 304

Query: 423 SLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSL------------ 470
           SLL        K +    ++ P E        VL   P  + I   S+            
Sbjct: 305 SLL-------LKYLDCRPQDLPRE--------VLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 471 ---EKLFRIVDIGPNAENKEEALRFRK-FWGEKAELRRFKDGT-IAEST---VW-ESEQW 521
              +KL  I++   N     E   +RK F      L  F     I       +W +  + 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAE---YRKMFD----RLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 522 TRHLILKGIIEYVLL-RHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSK 580
              +++  + +Y L+ +     KE+ + I   +   L    ++  +   S+++ + +   
Sbjct: 403 DVMVVVNKLHKYSLVEKQ---PKESTISIPS-IYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 581 RL-------------------HLIEDIPLKISSVQP---LDSAFRFTSVFPPEPHPLANE 618
                                HL      +  ++     LD  FRF          L  +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRF----------LEQK 506

Query: 619 -RHTVSRLHKLTPSCIQPLEVMIQLEG-----SGNWPMDHVAIEKTKSAFLIKIGESL 670
            RH  +  +         L  + QL+        N P     +      FL KI E+L
Sbjct: 507 IRHDSTAWNASGSI----LNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENL 559
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query808
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.39
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.34
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 98.52
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 96.03
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 95.85
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 95.49
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 94.78
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 93.2
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 90.99
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1.1e-11  Score=88.28  Aligned_cols=138  Identities=13%  Similarity=0.151  Sum_probs=109.9

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf             938899999999999984277767-8983279999999999301455878849999999999982388877724415899
Q 003595          236 RWKELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKG  314 (808)
Q Consensus       236 ~~p~f~dA~~LlKvWl~QRg~~~~-~~gf~gf~~s~ll~~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~  314 (808)
                      +..+|+.|++.+|.|+++||...+ .|.+||-.|+||+|.+||   +.+..++-+++..++...+++|| .+|+.++...
T Consensus         2 n~~~Fr~alR~IK~WAk~RGIYsn~~GylGGI~waILvArvCq---l~p~a~~~~ll~~FF~~ys~W~W-p~PV~l~~~~   77 (150)
T d2q66a1           2 KPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ---LYPNACSAVILNRFFIILSEWNW-PQPVILKPIE   77 (150)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHHCCT-TSCEESSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHCCCC-CCCEECCCCC
T ss_conf             7789999999999999980663021236378999999999998---67999889999999999867999-9954505743


Q ss_pred             CCCCC------HHHHHHHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCC
Q ss_conf             99988------46787665169988848998325224799888999999999999963103--888620122
Q 003595          315 QIGVS------KEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETF  378 (808)
Q Consensus       315 ~~~~~------~~~~~~f~~~f~vvf~D~sg~~Nl~~~~t~~~~~~L~~eA~~tl~~Ld~~--~~d~F~~lF  378 (808)
                      +....      .....+-.+..|++ .-..-..|-+.++|.++++.|+.|-+++.+++++.  +...++.+|
T Consensus        78 ~~~~~~~~w~p~~~~~d~~~~MpIi-TPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~~W~~Lf  148 (150)
T d2q66a1          78 DGPLQVRVWNPKIYAQDRSHRMPVI-TPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLF  148 (150)
T ss_dssp             CCCTTSCCCCTTTCHHHHTCSSCEE-CSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             4555677899877987745554441-3778742110104599999999999999999999983899899995
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure