Citrus Sinensis ID: 003632

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800------
MLLTLRSCYPLRLTPLSGNVVKPTSFSRLSFSSHHLFQKPKPLSSSLNPRRKMSSSAPNAFQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD
ccccccccccCECccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccEEEEEEEccCEEEEEECcccEEEEEEccccccccccccHHHHHHHHccccccEEEEEEEEEEECccccCECcHHHHHHHHHcccccccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHccccccccEEEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccEEEcccccccccccccEEEEEEEccccccccccccEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHccccccccccccEEccccccccEEEcccEEEEEEEccccccccccccccccccccccEEEccccEEECccccccccccHHHHHHHHHHHHHcccccccccccc
********YPL*******************************************************************************************************************************************************************GEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAK**************LTITKVFDTFRLIA*************RIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAE*******************
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MLLTLRSCYPLRLTPLSGNVVKPTSFSRLSFSSHHLFQKPKPLSSSLNPRRKMSSSAPNAFQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNxxxxxxxxxxxxxxxxxxxxxAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
DNA ligase 1 Essential protein. DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Involved in repair of both single strand breaks (SSBs) and double strand breaks (DSBs). Required in the endosperm for embryogenesis, probably to repair DNA-breaks generated by DME.probableQ42572
DNA ligase 1 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.probableQ9W1H4
DNA ligase 1 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.probableP12000

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
6.-.-.-Ligases.probable
6.5.-.-Forming phosphoric ester bonds.probable
6.5.1.-Ligases that form phosphoric-ester bonds.probable
6.5.1.1DNA ligase (ATP).probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1X9N, chain A
Confidence level:very confident
Coverage over the Query: 166-793
View the alignment between query and template
View the model in PyMOL