Citrus Sinensis ID: 003632

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800------
MLLTLRSCYPLRLTPLSGNVVKPTSFSRLSFSSHHLFQKPKPLSSSLNPRRKMSSSAPNAFQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD
ccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccEEEEEEEccEEEEEEEEcccEEEEEEccccccccccccHHHHHHHHccccccEEEEEEEEEEEEccccEEEcHHHHHHHHHHccccccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHccccccccEEEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccEEEcccccccccccccEEEEEEEccccccccccccEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHccccccccccccEEccccccccEEEcccEEEEEEEccccccccccccccccccccccEEEccccEEEEccccccccccHHHHHHHHHHHHHcccccccccccc
cEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHccccccccEEccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHcccccccccccccccccccHHHHHHHHccccEEEEEEEcccEEEEEEccccEEEEEEccccccccccHHHHHHHHHHccccccEEEEEcEEEEEccccccEccHEEEcccccccccHHHcEEEEEEEEEEHHHccccHHHcccHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHccccccccEEEEEEEcccccccccccHEEEEEEccccccEEEEEEccccccHHHHHHHHHHcccccccccccEEEEcccccccEEEccEEEEEEEEcccccccHHHHHcccccccccEEEEcccEEEEcccccHcHcccHHHHHHHHHHHHHHHcccccccccc
mlltlrscyplrltplsgnvvkptsfsrlsfsshhlfqkpkplssslnprrkmsssapNAFQVLMSAAakkkpspqpnssssssspkkrrtldtqtpkttnsvVGEKIQEvaeepsndlvkpisnqidnpidsekesqptppspkkrkvnvnSVSAKEKIAELKSNIVLLKKkagefdpkmvacwekgervpfIFLSLVFDMISNETGRILITDIVCNMLRTvmettpedlVPVVYLAANkiapaheglelgigDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKAsrssqsmmrkpdpltitKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAvyneqhskpppniqspLEEAAKIVKQVFSVLPVYEKIVPAlltdgvwnlsntcsftpgipigpmlakptkgVSEIVNKFQDmeftceykydgeraqihyledgsveiysrnaerntgkfpdVVLAVSrlkkpsvrsfVLDCEIVAydrekqkilpfqtlstrarknvslsdikvDVCIYAFDILYRNGQPLLQEQLRVRREhlydsfeeepgffqfatTLTSIDLDEIQKFLDAAVDASCEGLIIktmdrdatyepskrslNWLKLKKDYIESIgdsldlvpiaafhgrgkrtgVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSsslrskvipkprpyyrfadtispdvwfeptevwevkaadltispvhraaigvvdpdkgislrfprlirvredktpeqassSEQVAEMYTAQklnhpnnqddnedd
mlltlrscyplrltplsgnvvKPTSFSRLsfsshhlfqkpkplssslnpRRKMSSSAPNAFQVLMSAAakkkpspqpnssssssspkkrrtldtqtpkttnsvvgekiqevaeepsndlvkpISNQIdnpidsekesqptppspkkrkvnvnsvsakekiaelkSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKAsrssqsmmrkpdpltitkVFDTFRLIAkeagkdsqekkKNRIKALLvaatdcepqyLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSrnaerntgkfpdVVLAVsrlkkpsvrsfVLDCEivaydrekqkilpfqtlstrarknvslsdiKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIiktmdrdatyepskrslnwLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERssslrskvipkprpYYRFADTISPDVWFEPTEVWEVKAADLTISPVhraaigvvdpdkgislrfprlirvredktpeqassseqVAEMYTAqklnhpnnqddnedd
MLLTLRSCYPLRLTPLSGNVVKPTsfsrlsfsshhlfQKPKPLSSSLNPRRKMSSSAPNAFQVLMsaaakkkpspqpnssssssspkkRRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD
***TLRSCYPLRLTPLSGNVV********************************************************************************************************************************************ELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTE********************************LTITKVFDTFRLIA*************RIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVY*****************AAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE****************KPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRV************************************
******************************************************************************************************************************************************************************************KGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAK*****************TKVFDTFR*****************IKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTL*********LSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAE*******************
MLLTLRSCYPLRLTPLSGNVVKPTSFSRLSFSSH**********************APNAFQVLMSA*********************************NSVVGEKIQEVAEEPSNDLVKPISNQIDNPID********************SVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAK**********KPDPLTITKVFDTFRLIAKEA*********NRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAM*********SKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVRE************VAEMYTAQKLNHP*********
********YPL*******************************************************************************************************************************************************************GEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTA***************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLTLRSCYPLRLTPLSGNVVKPTSFSRLSFSSHHLFQKPKPLSSSLNPRRKMSSSAPNAFQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNxxxxxxxxxxxxxxxxxxxxxAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query806 2.2.26 [Sep-21-2011]
Q42572790 DNA ligase 1 OS=Arabidops yes no 0.971 0.991 0.678 0.0
Q869E11192 DNA ligase 1 OS=Dictyoste yes no 0.784 0.530 0.502 0.0
P518921070 DNA ligase 1 OS=Xenopus l N/A no 0.801 0.603 0.493 0.0
P18858919 DNA ligase 1 OS=Homo sapi yes no 0.780 0.684 0.495 0.0
P37913916 DNA ligase 1 OS=Mus muscu yes no 0.753 0.662 0.497 0.0
Q9JHY8918 DNA ligase 1 OS=Rattus no yes no 0.753 0.661 0.488 0.0
Q9W1H4747 DNA ligase 1 OS=Drosophil yes no 0.878 0.947 0.441 0.0
P12000768 DNA ligase 1 OS=Schizosac yes no 0.735 0.772 0.503 1e-176
Q27474 773 DNA ligase 1 OS=Caenorhab yes no 0.750 0.782 0.473 1e-164
P04819755 DNA ligase 1 OS=Saccharom yes no 0.744 0.794 0.454 1e-162
>sp|Q42572|DNLI1_ARATH DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2 Back     alignment and function desciption
 Score = 1127 bits (2915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/812 (67%), Positives = 662/812 (81%), Gaps = 29/812 (3%)

Query: 2   LLTLRSCYPLRLTPLSGNVVKPTSFSR--LSFSSH--HLFQKPKPLSSSLNPRRKMSSSA 57
           +L +RS   LR  P      + + FS   +SFS    HL      LSS     R MSSS 
Sbjct: 1   MLAIRSSNYLRCIPSLCTKTQISQFSSVLISFSRQISHL-----RLSSC---HRAMSSSR 52

Query: 58  PNAFQVLMS---AAAKKKPSPQPNSSSSSSSPKKRRTLDTQTPKTTNSVVGEKIQEVAEE 114
           P+AF  LMS   AAAKKK    P +++ S SP KR+  +TQ      ++V E      E 
Sbjct: 53  PSAFDALMSNARAAAKKK---TPQTTNLSRSPNKRKIGETQDANLGKTIVSEGTLPKTE- 108

Query: 115 PSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKA 174
              DL++P+S+  +   D+   ++ +    KK K          K  E+KS I LLKKK 
Sbjct: 109 ---DLLEPVSDSANPRSDTSSIAEDSKTGAKKAKT-------LSKTDEMKSKIGLLKKKP 158

Query: 175 GEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPV 234
            +FDP+ ++CWEKGERVPF+F++L FD+ISNE+GRI+ITDI+CNMLRTV+ TTPEDLV  
Sbjct: 159 NDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNMLRTVIATTPEDLVAT 218

Query: 235 VYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQ 294
           VYL+AN+IAPAHEG+ELGIG+++IIKA++EA GRTE HVKKQ  E+GDLGLVAK SRS+Q
Sbjct: 219 VYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGSRSTQ 278

Query: 295 SMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKL 354
           +MM KP+PLT+ KVFDTFR IAKE+GKDS EKKKNR+KALLVA TDCEP YL RLLQ+KL
Sbjct: 279 TMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTRLLQAKL 338

Query: 355 RIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLT 414
           R+G + QT+LAALGQAAVYNE+HSKPPPN +SPLEEAAKIVKQVF+VLPVY+ IVPALL+
Sbjct: 339 RLGFSGQTVLAALGQAAVYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLS 398

Query: 415 DGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDG 474
            GVWNL  TC+FT G+PIGPMLAKPTKGV+EI+NKFQD+ FTCEYKYDGERAQIH++EDG
Sbjct: 399 GGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMEDG 458

Query: 475 SVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRA 534
           + EIYSRNAERNTGK+PDV LA+SRLKKPSV+SF+LDCE+VA+DREK+KILPFQ LSTRA
Sbjct: 459 TFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRA 518

Query: 535 RKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSI 594
           RKNV+++DIKV VCI+AFD+LY NGQ L+QE L++RRE LY+SFEE+PG+FQFAT +TS 
Sbjct: 519 RKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFATAVTSN 578

Query: 595 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPI 654
           D+DEIQKFLDA+VD  CEGLIIKT+D DATYEP+KRS NWLKLKKDY++SIGDS+DLVPI
Sbjct: 579 DIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPI 638

Query: 655 AAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRP 714
           AAFHGRGKRTGVYGAFLLACYD + EEFQSICKIGTGFS+AML+ERSSSLRS+VI  P+ 
Sbjct: 639 AAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQ 698

Query: 715 YYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDK 774
           YYR  D+++PDVWFEPTEVWEVKAADLTISPVHRAA G+VDPDKGISLRFPRL+RVREDK
Sbjct: 699 YYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDK 758

Query: 775 TPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 806
            PE+A+SSEQ+A++Y AQK NHP+N+   +DD
Sbjct: 759 KPEEATSSEQIADLYQAQKHNHPSNEVKGDDD 790
Essential protein. DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Involved in repair of both single strand breaks (SSBs) and double strand breaks (DSBs). Required in the endosperm for embryogenesis, probably to repair DNA-breaks generated by DME.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 5EC: .EC: 1EC: .EC: 1
>sp|Q869E1|DNLI1_DICDI DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1 Back     alignment and function description
>sp|P51892|DNLI1_XENLA DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1 Back     alignment and function description
>sp|P18858|DNLI1_HUMAN DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1 Back     alignment and function description
>sp|P37913|DNLI1_MOUSE DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2 Back     alignment and function description
>sp|Q9JHY8|DNLI1_RAT DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=1 Back     alignment and function description
>sp|Q9W1H4|DNLI1_DROME DNA ligase 1 OS=Drosophila melanogaster GN=DNA-ligI PE=1 SV=2 Back     alignment and function description
>sp|P12000|DNLI1_SCHPO DNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc17 PE=3 SV=1 Back     alignment and function description
>sp|Q27474|DNLI1_CAEEL DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 PE=3 SV=2 Back     alignment and function description
>sp|P04819|DNLI1_YEAST DNA ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC9 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query806
449456160801 PREDICTED: DNA ligase 1-like [Cucumis sa 0.973 0.980 0.711 0.0
449496284801 PREDICTED: LOW QUALITY PROTEIN: DNA liga 0.972 0.978 0.712 0.0
224106842684 predicted protein [Populus trichocarpa] 0.815 0.960 0.822 0.0
297849114793 ATLIG1 [Arabidopsis lyrata subsp. lyrata 0.975 0.991 0.690 0.0
30680522790 DNA ligase 1 [Arabidopsis thaliana] gi|2 0.971 0.991 0.678 0.0
1359495790 DNA ligase [Arabidopsis thaliana] 0.971 0.991 0.677 0.0
225436462723 PREDICTED: DNA ligase 1 [Vitis vinifera] 0.890 0.993 0.739 0.0
356542672776 PREDICTED: DNA ligase 1-like [Glycine ma 0.812 0.844 0.793 0.0
84453228682 putative DNA ligase [Trifolium pratense] 0.817 0.966 0.784 0.0
356541453701 PREDICTED: DNA ligase 1-like [Glycine ma 0.861 0.990 0.696 0.0
>gi|449456160|ref|XP_004145818.1| PREDICTED: DNA ligase 1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1165 bits (3015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/821 (71%), Positives = 673/821 (81%), Gaps = 36/821 (4%)

Query: 2   LLTLRSCYPLRLTPLSGNVVKPTSFSRLSFSSHHLFQKPKPLSSS-LNPRRKMSSSAPNA 60
           +L+LRSC+ LR  P++   +    F +L FS++  F   KP+S + ++P     SS P+A
Sbjct: 1   MLSLRSCFYLR--PIT---LPHPQFKKLIFSNNSSFSF-KPISHNFVSPM----SSRPSA 50

Query: 61  FQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDT-QTPKTTNSVVGEKIQEVAEEPSNDL 119
           F  LMS A         NSS     PKKR+ LD+  +P   +S +  +     E      
Sbjct: 51  FDALMSGARAAAKKKPANSS-----PKKRKALDSLDSPLKPSSFLALESTPPVESQCGSS 105

Query: 120 VKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAK--------------EKIAELKS 165
           V  + +     +D     +      K R+ N   V AK              E+ A+LKS
Sbjct: 106 VSNLDDHGGTHLDGVDLGET-----KLRQDNDGGVGAKIGPFGNKTCASSVQERTAKLKS 160

Query: 166 NIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVME 225
           +   LKKKA +F+ K VACW++GERVPF+FL L FDMIS E+ RI ITDIVCNMLRTVM+
Sbjct: 161 STAELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMD 220

Query: 226 TTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGL 285
           TTP+DLV  VYL ANKIAPAHEGLELGIGDASIIKAL+EA GRTE+ VKKQY+E+GDLGL
Sbjct: 221 TTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGL 280

Query: 286 VAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQY 345
           VAKASRSSQSMMRKPD LT+TKVFDTFRLIAKE+GKDSQEKKKN IK+LLVAATDCEP Y
Sbjct: 281 VAKASRSSQSMMRKPDALTVTKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLY 340

Query: 346 LIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVY 405
           LIRLLQ+KLRIGLAEQTLLAALGQAAVY+E+HS PPPNIQSPLEEA+KIVKQV+S+LPVY
Sbjct: 341 LIRLLQTKLRIGLAEQTLLAALGQAAVYSEKHSTPPPNIQSPLEEASKIVKQVYSILPVY 400

Query: 406 EKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGER 465
           +K+VPALL+ GVWNLS TC+FTPGIPIGPMLAKPTKGVSEI+NKFQ +EFTCEYKYDGER
Sbjct: 401 DKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGER 460

Query: 466 AQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKIL 525
           AQIHY+EDGSVEIYSRNAERNTGKFPDVVL VSR+KKPSVRSF+LDCE+VAYDR KQKIL
Sbjct: 461 AQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKIL 520

Query: 526 PFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 585
           PFQ LSTRARKNV++SDIKV+VC++AFD+LY +GQPL+Q +L VRRE LY+SF EE G+F
Sbjct: 521 PFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYNSFIEESGYF 580

Query: 586 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESI 645
           QFAT + + DL+EIQKFLDA+VD SCEGLIIKT++RDATYEPSKRS NWLKLKKDYI+SI
Sbjct: 581 QFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSI 640

Query: 646 GDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLR 705
           GDSLDLVPIAAFHGRGKRTGVYGAFLLACYD++NEEFQSICKIGTGFSEAMLEERS+SLR
Sbjct: 641 GDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLR 700

Query: 706 SKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFP 765
           SKVIP+P+ YYR+ DTI+PDVWFEPTEVWEVKAADLTISPVHRA +G+VD DKGISLRFP
Sbjct: 701 SKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFP 760

Query: 766 RLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 806
           RL+RVREDK PE+ASSSEQVA+MY AQK NH NNQDDN DD
Sbjct: 761 RLVRVREDKNPEEASSSEQVADMYNAQKHNHQNNQDDNGDD 801

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449496284|ref|XP_004160093.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224106842|ref|XP_002314303.1| predicted protein [Populus trichocarpa] gi|222850711|gb|EEE88258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297849114|ref|XP_002892438.1| ATLIG1 [Arabidopsis lyrata subsp. lyrata] gi|297338280|gb|EFH68697.1| ATLIG1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30680522|ref|NP_172293.2| DNA ligase 1 [Arabidopsis thaliana] gi|27735188|sp|Q42572.2|DNLI1_ARATH RecName: Full=DNA ligase 1; Short=AtLIG1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor gi|26449576|dbj|BAC41914.1| putative DNA ligase [Arabidopsis thaliana] gi|29029040|gb|AAO64899.1| At1g08130 [Arabidopsis thaliana] gi|332190130|gb|AEE28251.1| DNA ligase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|1359495|emb|CAA66599.1| DNA ligase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225436462|ref|XP_002272683.1| PREDICTED: DNA ligase 1 [Vitis vinifera] gi|297734904|emb|CBI17138.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356542672|ref|XP_003539790.1| PREDICTED: DNA ligase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|84453228|dbj|BAE71211.1| putative DNA ligase [Trifolium pratense] Back     alignment and taxonomy information
>gi|356541453|ref|XP_003539190.1| PREDICTED: DNA ligase 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query806
TAIR|locus:2199953790 LIG1 "DNA ligase 1" [Arabidops 0.924 0.943 0.693 4.2e-285
TAIR|locus:2010207657 AT1G49250 [Arabidopsis thalian 0.743 0.911 0.682 1.1e-229
UNIPROTKB|Q0IWT4828 Os10g0489200 "DNA ligase" [Ory 0.718 0.699 0.711 1.3e-224
DICTYBASE|DDB_G02744931192 lig1 "DNA ligase I" [Dictyoste 0.862 0.583 0.480 3.4e-180
UNIPROTKB|B4DTU4888 LIG1 "DNA ligase" [Homo sapien 0.877 0.796 0.464 4.1e-173
UNIPROTKB|P18858919 LIG1 "DNA ligase 1" [Homo sapi 0.877 0.769 0.464 5.3e-173
UNIPROTKB|F1M624912 Lig1 "DNA ligase" [Rattus norv 0.780 0.689 0.487 3.5e-172
UNIPROTKB|F1M8E6913 Lig1 "DNA ligase" [Rattus norv 0.780 0.688 0.487 3.5e-172
MGI|MGI:101789916 Lig1 "ligase I, DNA, ATP-depen 0.780 0.686 0.489 1.1e-170
UNIPROTKB|A8JH25813 LIG1 "DNA ligase" [Chlamydomon 0.766 0.760 0.521 1.5e-170
TAIR|locus:2199953 LIG1 "DNA ligase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2739 (969.2 bits), Expect = 4.2e-285, P = 4.2e-285
 Identities = 524/756 (69%), Positives = 629/756 (83%)

Query:    51 RKMSSSAPNAFQVLMXXXXXXXXXXXXXXXXXXXXXXXRRTLDTQTPKTTNSVVGEKIQE 110
             R MSSS P+AF  LM                       R+  +TQ      ++V E    
Sbjct:    46 RAMSSSRPSAFDALMSNARAAAKKKTPQTTNLSRSPNKRKIGETQDANLGKTIVSEGTLP 105

Query:   111 VAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLL 170
               E    DL++P+S+  +   D+   ++ +    KK K    ++S   K  E+KS I LL
Sbjct:   106 KTE----DLLEPVSDSANPRSDTSSIAEDSKTGAKKAK----TLS---KTDEMKSKIGLL 154

Query:   171 KKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPED 230
             KKK  +FDP+ ++CWEKGERVPF+F++L FD+ISNE+GRI+ITDI+CNMLRTV+ TTPED
Sbjct:   155 KKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNMLRTVIATTPED 214

Query:   231 LVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKAS 290
             LV  VYL+AN+IAPAHEG+ELGIG+++IIKA++EA GRTE HVKKQ  E+GDLGLVAK S
Sbjct:   215 LVATVYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGS 274

Query:   291 RSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLL 350
             RS+Q+MM KP+PLT+ KVFDTFR IAKE+GKDS EKKKNR+KALLVA TDCEP YL RLL
Sbjct:   275 RSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTRLL 334

Query:   351 QSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVP 410
             Q+KLR+G + QT+LAALGQAAVYNE+HSKPPPN +SPLEEAAKIVKQVF+VLPVY+ IVP
Sbjct:   335 QAKLRLGFSGQTVLAALGQAAVYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVP 394

Query:   411 ALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHY 470
             ALL+ GVWNL  TC+FT G+PIGPMLAKPTKGV+EI+NKFQD+ FTCEYKYDGERAQIH+
Sbjct:   395 ALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHF 454

Query:   471 LEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTL 530
             +EDG+ EIYSRNAERNTGK+PDV LA+SRLKKPSV+SF+LDCE+VA+DREK+KILPFQ L
Sbjct:   455 MEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQIL 514

Query:   531 STRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590
             STRARKNV+++DIKV VCI+AFD+LY NGQ L+QE L++RRE LY+SFEE+PG+FQFAT 
Sbjct:   515 STRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFATA 574

Query:   591 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLD 650
             +TS D+DEIQKFLDA+VD  CEGLIIKT+D DATYEP+KRS NWLKLKKDY++SIGDS+D
Sbjct:   575 VTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVD 634

Query:   651 LVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP 710
             LVPIAAFHGRGKRTGVYGAFLLACYD + EEFQSICKIGTGFS+AML+ERSSSLRS+VI 
Sbjct:   635 LVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIA 694

Query:   711 KPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRV 770
              P+ YYR  D+++PDVWFEPTEVWEVKAADLTISPVHRAA G+VDPDKGISLRFPRL+RV
Sbjct:   695 TPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRV 754

Query:   771 REDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 806
             REDK PE+A+SSEQ+A++Y AQK NHP+N+   +DD
Sbjct:   755 REDKKPEEATSSEQIADLYQAQKHNHPSNEVKGDDD 790
GO:0003677 "DNA binding" evidence=IEA
GO:0003909 "DNA ligase activity" evidence=IEA
GO:0003910 "DNA ligase (ATP) activity" evidence=IEA;ISS;IBA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006266 "DNA ligation" evidence=IBA
GO:0005739 "mitochondrion" evidence=IDA
GO:0000012 "single strand break repair" evidence=IMP
GO:0006260 "DNA replication" evidence=IMP
GO:0006302 "double-strand break repair" evidence=IMP
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
TAIR|locus:2010207 AT1G49250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IWT4 Os10g0489200 "DNA ligase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274493 lig1 "DNA ligase I" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|B4DTU4 LIG1 "DNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P18858 LIG1 "DNA ligase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1M624 Lig1 "DNA ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M8E6 Lig1 "DNA ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:101789 Lig1 "ligase I, DNA, ATP-dependent" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A8JH25 LIG1 "DNA ligase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9W1H4DNLI1_DROME6, ., 5, ., 1, ., 10.44150.87840.9477yesno
Q42572DNLI1_ARATH6, ., 5, ., 1, ., 10.67850.97140.9911yesno
P12000DNLI1_SCHPO6, ., 5, ., 1, ., 10.50330.73570.7721yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.5.1.10.991
3rd Layer6.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query806
PLN03113744 PLN03113, PLN03113, DNA ligase 1; Provisional 0.0
TIGR00574514 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1 1e-167
PRK01109590 PRK01109, PRK01109, ATP-dependent DNA ligase; Prov 1e-159
cd07900219 cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation 1e-138
COG1793444 COG1793, CDC9, ATP-dependent DNA ligase [DNA repli 1e-95
cd07969144 cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oli 1e-90
pfam01068195 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligas 9e-67
pfam04675177 pfam04675, DNA_ligase_A_N, DNA ligase N terminus 6e-58
cd07898201 cd07898, Adenylation_DNA_ligase, Adenylation domai 1e-53
cd07901207 cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenyla 1e-50
PRK03180508 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed 1e-47
cd07893129 cd07893, OBF_DNA_ligase, The Oligonucleotide/oligo 1e-45
cd07903225 cd07903, Adenylation_DNA_ligase_IV, Adenylation do 2e-44
cd07906190 cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenyla 5e-36
cd07902213 cd07902, Adenylation_DNA_ligase_III, Adenylation d 2e-35
TIGR02779298 TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, l 1e-31
PRK09247539 PRK09247, PRK09247, ATP-dependent DNA ligase; Vali 4e-30
pfam0467995 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligas 6e-29
TIGR04120526 TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent 5e-28
cd07972122 cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleo 4e-26
PRK09632764 PRK09632, PRK09632, ATP-dependent DNA ligase; Revi 5e-25
cd07968140 cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/ol 3e-23
cd07897207 cd07897, Adenylation_DNA_ligase_Bac1, Adenylation 9e-23
cd07967139 cd07967, OBF_DNA_ligase_III, The Oligonucleotide/o 2e-21
cd08040108 cd08040, OBF_DNA_ligase_family, The Oligonucleotid 1e-20
cd06846182 cd06846, Adenylation_DNA_ligase_like, Adenylation 5e-20
cd07905194 cd07905, Adenylation_DNA_ligase_LigC, Adenylation 2e-19
PRK05972 860 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed 2e-18
TIGR02776 552 TIGR02776, NHEJ_ligase_prk, DNA ligase D 5e-16
cd08039235 cd08039, Adenylation_DNA_ligase_Fungal, Adenylatio 1e-14
PRK08224350 PRK08224, ligC, ATP-dependent DNA ligase; Reviewed 2e-13
PRK07636275 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed 7e-11
PRK09633 610 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed 2e-09
cd07971115 cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/ 7e-09
PRK09125282 PRK09125, PRK09125, DNA ligase; Provisional 9e-08
cd07896174 cd07896, Adenylation_kDNA_ligase_like, Adenylation 3e-06
PHA00454315 PHA00454, PHA00454, ATP-dependent DNA ligase 1e-04
>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional Back     alignment and domain information 
 Score = 1293 bits (3347), Expect = 0.0
 Identities = 583/756 (77%), Positives = 656/756 (86%), Gaps = 15/756 (1%)

Query: 54  SSSAPNAFQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDTQTPKTTNSVVGEKIQEVAE 113
            SS P+AF  LMS A       QP + S SSSPKKR+  +TQ      + V E      E
Sbjct: 1   MSSRPSAFDALMSNARAAAKKKQPQTQSQSSSPKKRKIGETQDANLGKTNVSEGTLPKTE 60

Query: 114 ---EPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLL 170
              EP +D  KP S+      DS+  ++      K +K             E+KS I LL
Sbjct: 61  DTIEPKSDSAKPRSSTSSIAEDSKTGTKKAQTLSKPKKD------------EMKSKIGLL 108

Query: 171 KKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPED 230
           KKK  +FDP+ VA WEKGERVPF+F++L FD+ISNETGRI+ITDIVCNMLRTVM TTPED
Sbjct: 109 KKKPNDFDPEKVAYWEKGERVPFLFVALAFDLISNETGRIVITDIVCNMLRTVMATTPED 168

Query: 231 LVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKAS 290
           LV VVYL AN+IAPAHEG+ELGIG+A+IIKALAEA GRTE  VKKQY+E+GDLGLVAKAS
Sbjct: 169 LVAVVYLLANRIAPAHEGVELGIGEATIIKALAEAFGRTEKQVKKQYKELGDLGLVAKAS 228

Query: 291 RSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLL 350
           RSSQSMMRKP+PLT+ KVF+TF+ IAKE+GKDSQEKKKNRIKALLVAATDCEP YLIRLL
Sbjct: 229 RSSQSMMRKPEPLTVVKVFNTFQQIAKESGKDSQEKKKNRIKALLVAATDCEPLYLIRLL 288

Query: 351 QSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVP 410
           Q+KLRIGLA QTLLAALGQAAVYNE+HS PPPNIQSPLEEAAKIVKQV+SVLPVY+KIVP
Sbjct: 289 QTKLRIGLAGQTLLAALGQAAVYNEEHSTPPPNIQSPLEEAAKIVKQVYSVLPVYDKIVP 348

Query: 411 ALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHY 470
           ALL+ GVWNL  TCSFTPG+P+GPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIH+
Sbjct: 349 ALLSGGVWNLPKTCSFTPGVPVGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHF 408

Query: 471 LEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTL 530
           LEDGSVEIYSRNAERNTGK+PDVV+A+SRLKKPSV+SF+LDCE+VAYDREK+KILPFQ L
Sbjct: 409 LEDGSVEIYSRNAERNTGKYPDVVVAISRLKKPSVKSFILDCELVAYDREKKKILPFQIL 468

Query: 531 STRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590
           STRARKNV +SDIKVDVCI+AFD+LY NGQPL+QEQL++RREHLY+SFEE+PGFFQFAT 
Sbjct: 469 STRARKNVVMSDIKVDVCIFAFDMLYLNGQPLIQEQLKIRREHLYESFEEDPGFFQFATA 528

Query: 591 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLD 650
           +TS DL+EIQKFLDAAVDASCEGLIIKT+++DATYEPSKRS NWLKLKKDY+ESIGDSLD
Sbjct: 529 ITSNDLEEIQKFLDAAVDASCEGLIIKTLNKDATYEPSKRSNNWLKLKKDYMESIGDSLD 588

Query: 651 LVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP 710
           LVPIAAFHGRGKRTGVYGAFLLACYDSN EEFQSICKIGTGFSEA+LEERS+SLRS+VIP
Sbjct: 589 LVPIAAFHGRGKRTGVYGAFLLACYDSNKEEFQSICKIGTGFSEAVLEERSASLRSQVIP 648

Query: 711 KPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRV 770
            P+ YYR+ D+I PDVWFEPTEVWEVKAADLTISPVHRAA+G+VDPDKGISLRFPRL+RV
Sbjct: 649 TPKSYYRYGDSIKPDVWFEPTEVWEVKAADLTISPVHRAAVGIVDPDKGISLRFPRLVRV 708

Query: 771 REDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 806
           REDK+PEQA+SSEQVA+MY AQK NHP+NQDDN+DD
Sbjct: 709 REDKSPEQATSSEQVADMYNAQKHNHPSNQDDNDDD 744

Length = 744
>gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1) Back     alignment and domain information
>gnl|CDD|234900 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|185710 cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation domain of eukaryotic DNA Ligase I Back     alignment and domain information
>gnl|CDD|224706 COG1793, CDC9, ATP-dependent DNA ligase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|153438 cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|216280 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain Back     alignment and domain information
>gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus Back     alignment and domain information
>gnl|CDD|185709 cd07898, Adenylation_DNA_ligase, Adenylation domain of ATP-dependent DNA Ligases Back     alignment and domain information
>gnl|CDD|185711 cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenylation domain of archaeal and bacterial LigB-like DNA ligases Back     alignment and domain information
>gnl|CDD|235108 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|153435 cd07893, OBF_DNA_ligase, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases Back     alignment and domain information
>gnl|CDD|185713 cd07903, Adenylation_DNA_ligase_IV, Adenylation domain of DNA Ligase IV Back     alignment and domain information
>gnl|CDD|185715 cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>gnl|CDD|185712 cd07902, Adenylation_DNA_ligase_III, Adenylation domain of DNA Ligase III Back     alignment and domain information
>gnl|CDD|234009 TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, ligase domain Back     alignment and domain information
>gnl|CDD|236428 PRK09247, PRK09247, ATP-dependent DNA ligase; Validated Back     alignment and domain information
>gnl|CDD|218210 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal region Back     alignment and domain information
>gnl|CDD|234477 TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent, PP_1105 family Back     alignment and domain information
>gnl|CDD|153441 cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|236599 PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|153437 cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|185708 cd07897, Adenylation_DNA_ligase_Bac1, Adenylation domain of putative bacterial ATP-dependent DNA ligases Back     alignment and domain information
>gnl|CDD|153436 cd07967, OBF_DNA_ligase_III, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|153442 cd08040, OBF_DNA_ligase_family, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases Back     alignment and domain information
>gnl|CDD|185704 cd06846, Adenylation_DNA_ligase_like, Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases Back     alignment and domain information
>gnl|CDD|185714 cd07905, Adenylation_DNA_ligase_LigC, Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|234007 TIGR02776, NHEJ_ligase_prk, DNA ligase D Back     alignment and domain information
>gnl|CDD|185716 cd08039, Adenylation_DNA_ligase_Fungal, Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins Back     alignment and domain information
>gnl|CDD|236191 PRK08224, ligC, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|236070 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|182006 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|153440 cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|181662 PRK09125, PRK09125, DNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|185707 cd07896, Adenylation_kDNA_ligase_like, Adenylation domain of kDNA ligases and similar proteins Back     alignment and domain information
>gnl|CDD|222798 PHA00454, PHA00454, ATP-dependent DNA ligase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 806
KOG0967714 consensus ATP-dependent DNA ligase I [Replication, 100.0
PLN03113744 DNA ligase 1; Provisional 100.0
PRK01109590 ATP-dependent DNA ligase; Provisional 100.0
PRK09247539 ATP-dependent DNA ligase; Validated 100.0
PRK03180508 ligB ATP-dependent DNA ligase; Reviewed 100.0
TIGR00574514 dnl1 DNA ligase I, ATP-dependent (dnl1). All prote 100.0
KOG0966 881 consensus ATP-dependent DNA ligase IV [Replication 100.0
COG1793444 CDC9 ATP-dependent DNA ligase [DNA replication, re 100.0
PHA02587488 30 DNA ligase; Provisional 100.0
TIGR02779298 NHEJ_ligase_lig DNA polymerase LigD, ligase domain 100.0
PRK09632764 ATP-dependent DNA ligase; Reviewed 100.0
PRK08224350 ligC ATP-dependent DNA ligase; Reviewed 100.0
PRK05972 860 ligD ATP-dependent DNA ligase; Reviewed 100.0
PRK09633 610 ligD ATP-dependent DNA ligase; Reviewed 100.0
PRK07636275 ligB ATP-dependent DNA ligase; Reviewed 100.0
cd07900219 Adenylation_DNA_ligase_I_Euk Adenylation domain of 100.0
TIGR02776 552 NHEJ_ligase_prk DNA ligase D. Members of this prot 100.0
PHA00454315 ATP-dependent DNA ligase 100.0
PRK09125282 DNA ligase; Provisional 100.0
cd07903225 Adenylation_DNA_ligase_IV Adenylation domain of DN 100.0
cd07901207 Adenylation_DNA_ligase_Arch_LigB Adenylation domai 100.0
cd07902213 Adenylation_DNA_ligase_III Adenylation domain of D 100.0
cd07897207 Adenylation_DNA_ligase_Bac1 Adenylation domain of 100.0
cd08039235 Adenylation_DNA_ligase_Fungal Adenylation domain o 100.0
cd07898201 Adenylation_DNA_ligase Adenylation domain of ATP-d 100.0
PF01068202 DNA_ligase_A_M: ATP dependent DNA ligase domain; I 100.0
cd07905194 Adenylation_DNA_ligase_LigC Adenylation domain of 100.0
cd07906190 Adenylation_DNA_ligase_LigD_LigC Adenylation domai 100.0
cd07967139 OBF_DNA_ligase_III The Oligonucleotide/oligosaccha 100.0
PF04675177 DNA_ligase_A_N: DNA ligase N terminus; InterPro: I 100.0
cd07896174 Adenylation_kDNA_ligase_like Adenylation domain of 100.0
cd07969144 OBF_DNA_ligase_I The Oligonucleotide/oligosacchari 100.0
cd06846182 Adenylation_DNA_ligase_like Adenylation domain of 99.97
cd07893129 OBF_DNA_ligase The Oligonucleotide/oligosaccharide 99.97
cd07968140 OBF_DNA_ligase_IV The Oligonucleotide/oligosacchar 99.96
cd07972122 OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligo 99.96
cd07895215 Adenylation_mRNA_capping Adenylation domain of GTP 99.94
KOG4437482 consensus ATP-dependent DNA ligase III [Replicatio 99.92
cd07971115 OBF_DNA_ligase_LigD The Oligonucleotide/oligosacch 99.9
PF0467997 DNA_ligase_A_C: ATP dependent DNA ligase C termina 99.89
cd08040108 OBF_DNA_ligase_family The Oligonucleotide/oligosac 99.87
cd07970122 OBF_DNA_ligase_LigC The Oligonucleotide/oligosacch 99.81
cd07894342 Adenylation_RNA_ligase Adenylation domain of RNA c 99.75
cd0804177 OBF_kDNA_ligase_like The Oligonucleotide/oligosacc 99.34
PF01331192 mRNA_cap_enzyme: mRNA capping enzyme, catalytic do 99.27
COG1423382 ATP-dependent DNA ligase, homolog of eukaryotic li 98.84
PF1474366 DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2 98.71
TIGR01209374 RNA ligase, Pab1020 family. Members of this family 98.66
COG5226404 CEG1 mRNA capping enzyme, guanylyltransferase (alp 98.54
cd09232186 Snurportin-1_C C-terminal m3G cap-binding domain o 98.51
PRK08097562 ligB NAD-dependent DNA ligase LigB; Reviewed 98.11
PRK01109590 ATP-dependent DNA ligase; Provisional 98.07
smart00532441 LIGANc Ligase N family. 98.05
cd00114307 LIGANc NAD+ dependent DNA ligase adenylation domai 97.89
PF01653315 DNA_ligase_aden: NAD-dependent DNA ligase adenylat 97.88
TIGR00575 652 dnlj DNA ligase, NAD-dependent. The member of this 97.87
PRK14350 669 ligA NAD-dependent DNA ligase LigA; Provisional 97.81
PRK07956 665 ligA NAD-dependent DNA ligase LigA; Validated 97.75
PRK14351 689 ligA NAD-dependent DNA ligase LigA; Provisional 97.71
PF09414186 RNA_ligase: RNA ligase; InterPro: IPR021122 This e 97.44
TIGR02307325 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of t 97.25
COG0272 667 Lig NAD-dependent DNA ligase (contains BRCT domain 96.9
PHA02142366 putative RNA ligase 96.25
PRK03180508 ligB ATP-dependent DNA ligase; Reviewed 94.66
KOG3132325 consensus m3G-cap-specific nuclear import receptor 94.14
TIGR02306341 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me 93.52
TIGR00574514 dnl1 DNA ligase I, ATP-dependent (dnl1). All prote 92.5
KOG2386393 consensus mRNA capping enzyme, guanylyltransferase 91.24
PRK09247539 ATP-dependent DNA ligase; Validated 89.02
PF04675177 DNA_ligase_A_N: DNA ligase N terminus; InterPro: I 88.54
PLN03113744 DNA ligase 1; Provisional 81.49
>KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-159  Score=1321.68  Aligned_cols=632  Identities=64%  Similarity=1.067  Sum_probs=616.7

Q ss_pred             HHHhhhhhccccCCCCCCCcccccccCCCccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCCchHhHHHHHhC
Q 003632          161 AELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAAN  240 (806)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~p~~~~~w~~~~~~~F~~la~~~~~I~~tssr~~k~~iL~~~~r~~i~~~p~dl~~~vyL~~~  240 (806)
                      .+.+...+.+.++|..|+|++.+||..|+++||++||++|+.|+.|++|+++++||+|||+.+++.+|+||+++|||++|
T Consensus        69 ~~~~~~~~~~~~~~~~y~~~~~a~wk~~~~~py~~~a~tF~kIe~~s~Rl~i~~il~n~f~~v~~~sP~dLlp~vYLsiN  148 (714)
T KOG0967|consen   69 ADSKSDSGLLKKSPEDYLPSENACWKDGSKVPYLELARTFEKIEETSGRLEIIDILSNFLRSVLATSPDDLLPTVYLSIN  148 (714)
T ss_pred             ccccccccccCCCccccchhhhhhccccCcCcHHHHHHHHHHHHhhccceeHHHHHHHHHHHHHhcCchhhhhHHHHhhh
Confidence            34555667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCccccccCCCHHHHHHHHHHHhCCCHHHHHHHHhhcCCHHHHHhhcccccCccCCCCCCCHHHHHHHHHHHHHHhC
Q 003632          241 KIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAG  320 (806)
Q Consensus       241 ~l~P~~e~~elgIg~~~L~Kal~~~~g~s~~~ik~~~~~~GDlg~va~~~r~~q~~l~~~~~LTI~eV~~~L~~IA~~~G  320 (806)
                      +|.|+|+|.|||||++.|+|||+++||++..+++..|++.||||+||+.+|.+|++|++|+||||.+|+..|++||+.+|
T Consensus       149 ~l~P~yeGlELGvGes~l~KAi~EatGrt~~~vk~~~~~~GDLG~VA~~sR~sQ~~m~~P~pLtV~~VF~~Lr~IAk~sG  228 (714)
T KOG0967|consen  149 KLAPDYEGLELGVGESLLMKAIAEATGRTLSHVKNQYNKLGDLGLVAQGSRSSQRMMFKPKPLTVRDVFSTLRKIAKESG  228 (714)
T ss_pred             ccCccccCccccccHHHHHHHHHHHhCccHHHHHHHHHhcCcHHHHHhhcccccccccCCCCccHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHhcCCChHHHHHHHHhhcccCcccHHHHHHHHHhhhcccC----CCCCCCCCCcccHHHHHHHHH
Q 003632          321 KDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNE----QHSKPPPNIQSPLEEAAKIVK  396 (806)
Q Consensus       321 ~~sq~~k~~~L~~Ll~~~t~~E~k~LiRiIlkdLRiG~~e~til~ala~A~~~~~----~~~~~~~~l~~~l~~a~~~~k  396 (806)
                      ++||.+|++++..||.+|++.|+|||+|.|.++||||++++|||.||++|+.++.    .+++.+..+++.|+.+..+|+
T Consensus       229 ~~S~~kK~~lik~Llvac~~~E~kyLiRsL~gkLRiGlaeqTvL~AL~~A~~~~~~~~~~~~~~~d~~kd~le~~~~ivk  308 (714)
T KOG0967|consen  229 KGSQNKKKDLIKALLVACRGIEAKYLIRSLEGKLRIGLAEQTVLAALGQAFVLNDNNDEEKSKKPDSLKDPLEEAAQIVK  308 (714)
T ss_pred             cchhHHHHHHHHHHHHhcccccHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhccCchhhhccCCcchhhhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998763    345666778999999999999


Q ss_pred             HHhhcCCchhhhHhhhhhcCccccCCccccCCCCCCcccccccCCChHHHHhhcCCCceeEeeecceEeEEEEEecCCeE
Q 003632          397 QVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSV  476 (806)
Q Consensus       397 ~~y~~~p~~~~v~~~ll~~g~~~l~~~~~l~~g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V  476 (806)
                      ++|+++|||+.|+++|+++|+++|.++|.++||+|++||||+|++++.+++++|++..|.|||||||+|+|||+.++|.|
T Consensus       309 ~afcq~P~ydiivp~lL~~Gie~L~e~c~l~PGIPlKPMLAkpTK~i~evl~rf~~~~FTCEyKYDGeRAQIH~~edG~v  388 (714)
T KOG0967|consen  309 QAFCQLPDYDIIVPALLEHGIENLPETCKLTPGIPLKPMLAKPTKGIQEVLERFQDKAFTCEYKYDGERAQIHKLEDGTV  388 (714)
T ss_pred             HHHhcCCchhhhHHHHHHhhhhhccccCccCCCCCCcchhcCcchhHHHHHHHhhCceeEEEeecCceeeeeEEccCCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCcCCCCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCccCChHHHHHhhhccCCccccccceEEEEeeeee
Q 003632          477 EIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILY  556 (806)
Q Consensus       477 ~ifSR~gk~~T~~~Pel~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~~pFq~L~~r~rk~~~~~~~~~~v~~~vFDiLy  556 (806)
                      .|||||++++|.+||||...+..+..+.+.+||||||+|+||++.|+++|||.|++|.||+++.+++++.||+|+|||||
T Consensus       389 ~IfSRN~E~~T~kYPDi~~~~~~~~kp~v~sFIlD~EvVA~Dr~~~~IlpFQvLSTRkRk~v~v~dikV~Vcvf~FDily  468 (714)
T KOG0967|consen  389 EIFSRNSENNTGKYPDIIEVISKLKKPSVKSFILDCEVVAWDREKGKILPFQVLSTRKRKNVDVNDIKVKVCVFVFDILY  468 (714)
T ss_pred             EEEecccccccccCccHHHHHHHhhCCccceeEEeeeEEEEeccCCccCchhhhhhhhccccchhhceEEEEEEEEeeee
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEE
Q 003632          557 RNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLK  636 (806)
Q Consensus       557 lnG~~L~~~Pl~eRr~~L~~l~~~~~~~i~~~~~~~~~~~eei~~~~~~ai~~g~EGlmlK~~~~ds~Y~pGkRs~~WlK  636 (806)
                      +||++|+++||.+||++|.+.|.+++|+++++....+++.+++++||++++..+|||+|+|.+|.+++|+|.+||.+|+|
T Consensus       469 ~ng~~Li~~pL~eRR~~l~e~f~e~~g~f~fat~~~tn~~~eiq~Fl~~sv~~~cEGlMvKtLd~~atYep~kRs~~WlK  548 (714)
T KOG0967|consen  469 LNGESLIQEPLRERRELLHESFKEIPGEFQFATSLDTNDIDEIQEFLEESVQNSCEGLMVKTLDTNATYEPSKRSNNWLK  548 (714)
T ss_pred             eCChhhhhhhHHHHHHHHHhhcccCCCceeEeeeeccCCHHHHHHHHHHhhccCcceeEEEeeccccccCchhhccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccccccccCCcccEEEEEEEeCCCCCCCcccEEEEEEeeCCCCeEEEeeeccCCCCHHHHHHHHHhhccccCCCCCCCc
Q 003632          637 LKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYY  716 (806)
Q Consensus       637 lK~dY~~~~~dtlDlvVIGa~~G~Gkr~g~~gsfLla~~d~~~g~~~~v~kVgtGftd~~l~~l~~~l~~~~~~~p~~~~  716 (806)
                      +|+||++|+||++||||||+|+|+|||+||+|+||+||||+++++|++|||+||||||++++++++.+....+..|++||
T Consensus       549 lKkDYldgvgdslDLv~iga~~G~GrrtG~yg~fLlacyn~dteefqsiCKigtGFsD~~l~e~~~~l~~~~~~~~~~~y  628 (714)
T KOG0967|consen  549 LKKDYLDGVGDSLDLVVIGAYYGRGRRTGWYGGFLLACYNPDTEEFQSICKIGTGFSDEFLQELHESLSSTVIDSPKPYY  628 (714)
T ss_pred             hhhhhhcccccceeeeeeeeeeccccccccccceeEEeecCchHHHHHHHhhcCCCCHHHHHHHHHHhhhccccCcHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             ccCCCCCCcEEecCceEEEEEeceeecCccccccccccCCCCCceeeccEEeEEecCCCccCCCCHHHHHHHHHHh
Q 003632          717 RFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ  792 (806)
Q Consensus       717 ~~~~~~~pdvwieP~~V~EV~~~eit~S~~~~a~~g~~~~~~G~sLRFPRf~riR~DK~~~da~t~~el~ely~~q  792 (806)
                      .++...+||+||+|..||||++++||.||.|+||.|++++++|+|||||||+|+|+||.++||+|.+||++||++|
T Consensus       629 ~~d~s~kPd~wf~p~~VwEvk~Adlt~SPiy~Aa~Glv~~dkGISlRFPRfiRiR~DK~peeAtts~qiaemY~~Q  704 (714)
T KOG0967|consen  629 RFDESLKPDVWFEPTEVWEVKAADLTLSPIYKAALGLVDPDKGISLRFPRFIRIRDDKNPEEATTSSQIAEMYQAQ  704 (714)
T ss_pred             ccCccCCCccccCHHHHHHHhhccccccchhHhhhcCcCCCCceeEecceeeEeeccCChhhcccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999

>PLN03113 DNA ligase 1; Provisional Back     alignment and domain information
>PRK01109 ATP-dependent DNA ligase; Provisional Back     alignment and domain information
>PRK09247 ATP-dependent DNA ligase; Validated Back     alignment and domain information
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02587 30 DNA ligase; Provisional Back     alignment and domain information
>TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain Back     alignment and domain information
>PRK09632 ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK08224 ligC ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK07636 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I Back     alignment and domain information
>TIGR02776 NHEJ_ligase_prk DNA ligase D Back     alignment and domain information
>PHA00454 ATP-dependent DNA ligase Back     alignment and domain information
>PRK09125 DNA ligase; Provisional Back     alignment and domain information
>cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV Back     alignment and domain information
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases Back     alignment and domain information
>cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III Back     alignment and domain information
>cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases Back     alignment and domain information
>cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins Back     alignment and domain information
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases Back     alignment and domain information
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>cd07967 OBF_DNA_ligase_III The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins Back     alignment and domain information
>cd07969 OBF_DNA_ligase_I The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases Back     alignment and domain information
>cd07893 OBF_DNA_ligase The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases Back     alignment and domain information
>cd07968 OBF_DNA_ligase_IV The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>cd07972 OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes Back     alignment and domain information
>KOG4437 consensus ATP-dependent DNA ligase III [Replication, recombination and repair] Back     alignment and domain information
>cd07971 OBF_DNA_ligase_LigD The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>PF04679 DNA_ligase_A_C: ATP dependent DNA ligase C terminal region ; InterPro: IPR012309 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>cd08040 OBF_DNA_ligase_family The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases Back     alignment and domain information
>cd07970 OBF_DNA_ligase_LigC The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins Back     alignment and domain information
>cd08041 OBF_kDNA_ligase_like The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate Back     alignment and domain information
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair] Back     alignment and domain information
>PF14743 DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2Q2U_D 2Q2T_A 1FVI_A 1P8L_A Back     alignment and domain information
>TIGR01209 RNA ligase, Pab1020 family Back     alignment and domain information
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1 Back     alignment and domain information
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed Back     alignment and domain information
>PRK01109 ATP-dependent DNA ligase; Provisional Back     alignment and domain information
>smart00532 LIGANc Ligase N family Back     alignment and domain information
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain Back     alignment and domain information
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain Back     alignment and domain information
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02142 putative RNA ligase Back     alignment and domain information
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification] Back     alignment and domain information
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family Back     alignment and domain information
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) Back     alignment and domain information
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information
>PRK09247 ATP-dependent DNA ligase; Validated Back     alignment and domain information
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>PLN03113 DNA ligase 1; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query806
1x9n_A688 Crystal Structure Of Human Dna Ligase I Bound To 5' 0.0
2hiv_A621 Atp-Dependent Dna Ligase From S. Solfataricus Lengt 3e-86
3rr5_A570 Dna Ligase From The Archaeon Thermococcus Sp. 1519 2e-63
2cfm_A561 Atp-Dependent Dna Ligase From Pyrococcus Furiosus L 2e-58
4eq5_A571 Dna Ligase From The Archaeon Thermococcus Sibiricus 2e-57
3gde_A558 The Closed Conformation Of Atp-Dependent Dna Ligase 2e-53
3l2p_A579 Human Dna Ligase Iii Recognizes Dna Ends By Dynamic 1e-42
1vs0_A310 Crystal Structure Of The Ligase Domain From M. Tube 1e-09
3vnn_A139 Crystal Structure Of A Sub-Domain Of The Nucleotidy 3e-06
>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To 5'-Adenylated, Nicked Dna Length = 688 Back     alignment and structure 
Iteration: 1

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/642 (49%), Positives = 441/642 (68%), Gaps = 13/642 (2%)
Query: 177 FDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVY 236
           + P   ACW+ G++VP++ ++  F+ I   + R+   + + N+LR+V+  +P DL+PV+Y
Sbjct: 42  YHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRXVETLSNLLRSVVALSPPDLLPVLY 101
Query: 237 LAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM 296
           L+ N + P  +GLELG+GD  ++KA+A+A GR    V+ +  E GD+GLVA+ SRS+Q +
Sbjct: 102 LSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRL 161
Query: 297 MRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRI 356
              P PLT + VF  FR IA+  G  S  KK + IK L VA    E +++ R L  +LR+
Sbjct: 162 XLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRL 221
Query: 357 GLAEQTLLAALGQAAVYNEQHSKPPPNI------------QSPLEEAAKIVKQVFSVLPV 404
           GLAEQ++LAAL QA        + PP              ++ LEE   I+KQ F  +P 
Sbjct: 222 GLAEQSVLAALSQAVSLTPPGQEFPPAXVDAGKGKTAEARKTWLEEQGXILKQTFCEVPD 281
Query: 405 YEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGE 464
            ++I+P LL  G+  L   C  +PGIP+ P LA PT+G+SE++ +F++  FTCEYKYDG+
Sbjct: 282 LDRIIPVLLEHGLERLPEHCKLSPGIPLKPXLAHPTRGISEVLKRFEEAAFTCEYKYDGQ 341
Query: 465 RAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKI 524
           RAQIH LE G V+I+SRN E NTGK+PD++  + ++K PSV SF+LD E VA+DREK++I
Sbjct: 342 RAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQI 401
Query: 525 LPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGF 584
            PFQ L+TR RK V  S+I+V VC+YAFD++Y NG+ L++E L  RR+ L ++F E  G 
Sbjct: 402 QPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGE 461
Query: 585 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES 644
           F FAT+L + D+++I +FL+ +V  SCEGL +KT+D DATYE +KRS NWLKLKKDY++ 
Sbjct: 462 FVFATSLDTKDIEQIAEFLEQSVKDSCEGLXVKTLDVDATYEIAKRSHNWLKLKKDYLDG 521
Query: 645 IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
           +GD+LDLV I A+ GRGKR G YG FLLA YD ++EE Q+ICK+GTGFS+  LEE   SL
Sbjct: 522 VGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSL 581
Query: 705 RSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRF 764
           ++ V+P PRPY R    + PD W +P+ VWEVK ADL++SP++ AA G+VD DKGISLRF
Sbjct: 582 KALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRF 641
Query: 765 PRLIRVREDKTPEQASSSEQVAEMYTAQ-KLNHPNNQDDNED 805
           PR IRVREDK PEQA++S QVA +Y  Q ++ +   +D   D
Sbjct: 642 PRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSD 683
>pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus Length = 621 Back     alignment and structure
>pdb|3RR5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sp. 1519 Length = 570 Back     alignment and structure
>pdb|2CFM|A Chain A, Atp-Dependent Dna Ligase From Pyrococcus Furiosus Length = 561 Back     alignment and structure
>pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus Length = 571 Back     alignment and structure
>pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From Archaeoglobus Fulgidus Length = 558 Back     alignment and structure
>pdb|3L2P|A Chain A, Human Dna Ligase Iii Recognizes Dna Ends By Dynamic Switching Between Two Dna Bound States Length = 579 Back     alignment and structure
>pdb|1VS0|A Chain A, Crystal Structure Of The Ligase Domain From M. Tuberculosis Ligd At 2.4a Length = 310 Back     alignment and structure
>pdb|3VNN|A Chain A, Crystal Structure Of A Sub-Domain Of The Nucleotidyltransferase (Adenylation) Domain Of Human Dna Ligase Iv Length = 139 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query806
1x9n_A688 DNA ligase I; 5'-adenylated nicked DNA, protein-DN 0.0
2hiv_A621 Thermostable DNA ligase; ATP-dependent, open confo 0.0
2cfm_A561 Thermostable DNA ligase; protein-nucleotide comple 0.0
3gde_A558 DNA ligase; DNA-binding domain, adenylation domain 0.0
3l2p_A579 DNA ligase 3; DNA ligase, DNA repair, ATP-binding, 0.0
1vs0_A310 Putative DNA ligase-like protein RV0938/MT0965; OB 2e-76
1a0i_A348 DNA ligase; DNA replication; HET: DNA ATP; 2.60A { 8e-64
3vnn_A139 DNA ligase 4; non-homologous END joining, DNA repa 2e-50
1fvi_A297 Chlorella virus DNA ligase-adenylate; adenylated D 2e-32
2vug_A389 PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transfe 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3qwu_A370 DNA ligase; structural genomics, PSI-2, midwest ce 1e-06
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Length = 688 Back     alignment and structure
 Score =  751 bits (1940), Expect = 0.0
 Identities = 326/681 (47%), Positives = 455/681 (66%), Gaps = 13/681 (1%)

Query: 139 PTPPSPKKRKVNVNSVSA-KEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLS 197
           P  P+ KK        +  KE  AE   +          + P   ACW+ G++VP++ ++
Sbjct: 3   PRKPAVKKEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVA 62

Query: 198 LVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDAS 257
             F+ I   + R+ + + + N+LR+V+  +P DL+PV+YL+ N + P  +GLELG+GD  
Sbjct: 63  RTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGV 122

Query: 258 IIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAK 317
           ++KA+A+A GR    V+ +  E GD+GLVA+ SRS+Q +M  P PLT + VF  FR IA+
Sbjct: 123 LLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIAR 182

Query: 318 EAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQH 377
             G  S  KK + IK L VA    E +++ R L  +LR+GLAEQ++LAAL QA       
Sbjct: 183 LTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPG 242

Query: 378 SKPPPNI------------QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCS 425
            + PP +            ++ LEE   I+KQ F  +P  ++I+P LL  G+  L   C 
Sbjct: 243 QEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCK 302

Query: 426 FTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAER 485
            +PGIP+ PMLA PT+G+SE++ +F++  FTCEYKYDG+RAQIH LE G V+I+SRN E 
Sbjct: 303 LSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 362

Query: 486 NTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKV 545
           NTGK+PD++  + ++K PSV SF+LD E VA+DREK++I PFQ L+TR RK V  S+I+V
Sbjct: 363 NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQV 422

Query: 546 DVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDA 605
            VC+YAFD++Y NG+ L++E L  RR+ L ++F E  G F FAT+L + D+++I +FL+ 
Sbjct: 423 QVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQ 482

Query: 606 AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTG 665
           +V  SCEGL++KT+D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G
Sbjct: 483 SVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAG 542

Query: 666 VYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPD 725
            YG FLLA YD ++EE Q+ICK+GTGFS+  LEE   SL++ V+P PRPY R    + PD
Sbjct: 543 RYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPD 602

Query: 726 VWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQV 785
            W +P+ VWEVK ADL++SP++ AA G+VD DKGISLRFPR IRVREDK PEQA++S QV
Sbjct: 603 HWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQV 662

Query: 786 AEMYTAQKLNHPNNQDDNEDD 806
           A +Y  Q        +D+  D
Sbjct: 663 ACLYRKQSQIQNQQGEDSGSD 683
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Length = 621 Back     alignment and structure
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Length = 561 Back     alignment and structure
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Length = 558 Back     alignment and structure
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} Length = 579 Back     alignment and structure
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} Length = 310 Back     alignment and structure
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 Length = 348 Back     alignment and structure
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} Length = 139 Back     alignment and structure
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* Length = 297 Back     alignment and structure
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} Length = 389 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} Length = 370 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 806
d1x9na1272 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human ( 6e-81
d1x9na3220 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human ( 2e-66
d1x9na2148 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (H 1e-55
d1a0ia2239 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-te 4e-37
d1fvia2188 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-te 2e-27
d1p16a2245 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subu 3e-11
d1ckma2228 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA 7e-10
d1s68a_233 d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Ba 2e-08
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 Back     information, alignment and structure

class: All alpha proteins
fold: ATP-dependent DNA ligase DNA-binding domain
superfamily: ATP-dependent DNA ligase DNA-binding domain
family: ATP-dependent DNA ligase DNA-binding domain
domain: DNA ligase I (LIG1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  258 bits (661), Expect = 6e-81
 Identities = 101/261 (38%), Positives = 155/261 (59%), Gaps = 12/261 (4%)

Query: 176 EFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVV 235
            + P   ACW+ G++VP++ ++  F+ I   + R+ + + + N+LR+V+  +P DL+PV+
Sbjct: 11  NYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVL 70

Query: 236 YLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQS 295
           YL+ N + P  +GLELG+GD  ++KA+A+A GR    V+ +  E GD+GLVA+ SRS+Q 
Sbjct: 71  YLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQR 130

Query: 296 MMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLR 355
           +M  P PLT + VF  FR IA+  G  S  KK + IK L VA    E +++ R L  +LR
Sbjct: 131 LMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLR 190

Query: 356 IGLAEQTLLAALGQAAVYNEQHSKPPPNI------------QSPLEEAAKIVKQVFSVLP 403
           +GLAEQ++LAAL QA        + PP +            ++ LEE   I+KQ F  +P
Sbjct: 191 LGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVP 250

Query: 404 VYEKIVPALLTDGVWNLSNTC 424
             ++I+P LL  G+  L   C
Sbjct: 251 DLDRIIPVLLEHGLERLPEHC 271
>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 220 Back     information, alignment and structure
>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 148 Back     information, alignment and structure
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Length = 239 Back     information, alignment and structure
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 188 Back     information, alignment and structure
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Length = 245 Back     information, alignment and structure
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 228 Back     information, alignment and structure
>d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Length = 233 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query806
d1x9na1272 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 100.0
d1x9na3220 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 100.0
d1x9na2148 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 100.0
d1a0ia2239 ATP-dependent DNA ligase, N-terminal domain {Bacte 100.0
d1fvia2188 ATP-dependent DNA ligase, N-terminal domain {Chlor 100.0
d1p16a2245 mRNA capping enzyme alpha subunit {Yeast (Candida 99.9
d1ckma2228 RNA guanylyltransferase (mRNA capping enzyme), N-t 99.89
d1s68a_233 RNA ligase 2, N-terminal domain {Bacteriophage T4 99.62
d1a0ia1109 ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 99.02
d1fvia1104 ATP-dependent DNA ligase {Chlorella virus PBCV-1 [ 98.79
d1b04a_312 Adenylation domain of NAD+-dependent DNA ligase {B 98.36
d1ta8a_313 Adenylation domain of NAD+-dependent DNA ligase {E 98.23
d1dgsa3314 Adenylation domain of NAD+-dependent DNA ligase {T 98.08
d1xdna_265 RNA editing ligase MP52 {Trypanosoma brucei [TaxId 98.08
d1x9na1272 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 96.97
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: ATP-dependent DNA ligase DNA-binding domain
superfamily: ATP-dependent DNA ligase DNA-binding domain
family: ATP-dependent DNA ligase DNA-binding domain
domain: DNA ligase I (LIG1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=397.63  Aligned_cols=256  Identities=39%  Similarity=0.698  Sum_probs=237.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             12589999986432346999633699999999999201649999999999986324999865769998819768986654
Q 003632          170 LKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGL  249 (806)
Q Consensus       170 ~~~~~~~~~~~~~~~w~~~~~v~F~~La~~fe~I~~ts~R~~k~~iL~~~lr~~i~~~p~dl~~~vyL~~~~i~P~~e~~  249 (806)
                      ++..-..|||.+.+||+.|+++||..||++|++|++|++|++|+++|++||+.+++.+|+|+.+++||++|+++|+|++.
T Consensus         5 ~~p~~~~~~p~~~~~w~~~~~vpf~~la~~f~~ie~ts~rl~k~~iL~~~f~~~~~~~p~dl~~~vyL~~g~l~P~~e~~   84 (272)
T d1x9na1           5 YNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGL   84 (272)
T ss_dssp             CCTTCSSCCHHHHCCSCTTSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCC
T ss_pred             CCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHCH
T ss_conf             78630257963210124899867999999999999840789999999999999884582689999999808767230020


Q ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             02777799999999993999899999986308977877420134676678998779999999999999829990899999
Q 003632          250 ELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKN  329 (806)
Q Consensus       250 elgIge~~LiKal~~~~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~e~L~kLA~~~G~~Sq~~K~~  329 (806)
                      +||||++.|+|++++++|++.+.+++.|+++||+|+||+.++..|.+++.+++|||.+||+.|++||..+|++||++|..
T Consensus        85 elgige~~l~kai~e~~G~~~~~i~~~~~~~GDlG~va~~~~~~~~~~~~~~~LTv~~V~~~L~~IA~~sG~~s~~~K~~  164 (272)
T d1x9na1          85 ELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKID  164 (272)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             12667999999999997929999999998738888999997511556667788879999999999997518772889999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC------------CCCCCHHHHHHHHHH
Q ss_conf             99999986397728999999820014764388999999864402677999999------------986418999999998
Q 003632          330 RIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPP------------NIQSPLEEAAKIVKQ  397 (806)
Q Consensus       330 il~~LL~~~t~~E~k~LvRiIlkdLRiGi~e~til~al~~a~~~~~~~~~~~~------------~l~~~l~~a~~~~~~  397 (806)
                      +|..||.+|++.|++||+|+|+++||||+++++|+.||++||.++........            ...+.++++...+++
T Consensus       165 ~i~~Ll~~~~~~E~kyliR~l~g~LRIGv~e~tvl~ALa~Af~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vk~  244 (272)
T d1x9na1         165 IIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQ  244 (272)
T ss_dssp             HHHHHHHHCCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999996899999999999975442043277899999999733841111220243332001215677889889999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9513994456476553038645688655
Q 003632          398 VFSVLPVYEKIVPALLTDGVWNLSNTCS  425 (806)
Q Consensus       398 ~y~~~pd~~~i~~~l~~~g~~~l~~~~~  425 (806)
                      +|++||||+.|++.++++|+.+++++|+
T Consensus       245 ay~~~P~~~~iv~~ll~~gi~~l~~~ck  272 (272)
T d1x9na1         245 TFCEVPDLDRIIPVLLEHGLERLPEHCK  272 (272)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHHTGGGCC
T ss_pred             HHHHCCCHHHHHHHHHHHCHHHHHHHCC
T ss_conf             8661898899999999948998875449
>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1fvia1 b.40.4.6 (A:190-293) ATP-dependent DNA ligase {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure