Citrus Sinensis ID: 003658

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-----

MGYSEEDDDTLTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFLHGNIGDGPWNFNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQNPEASRKYIREQMLKVFCSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHPETNTFHEDVRTTEKPKVIVDWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLKFPGVEGKRKKEDLELLLTEEKDVASKRNIVSESFVADKTVVKKLKLAEVYSGADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKPSLRKDSTLLKSRSFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRR

cccccccccccccccEEEEEEEccccEEEEEEccEEccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccEEEEEccccEEEEccccHHHHHHHHHHHEEEEEHHHccccccccHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccEEEccccccEEcccccccccccccccccccHHccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHccccHHHcccccccccccccccccHHHHHHHHHHHHccEEEcccEEEEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEcccccccccccEEEEEcccccccHHHHHHHHHHHHcccccEEEEEccccccc

cccccccccccccccccEEEEccccccEEEEEEEEEEcccccccccccEEEEEEEcccccEEEEEEEEEEEEEccccccEEEEEEccccEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccEEccccccccccccccccccEEEEEEcccccEEEEccccccccccccccccccccHHcccccccccccccEEccccccccEEEEEEcccccccccccccEEEEEcccccccccHHHHHHccccccccHHHHHHHHHccccccEcccEEEEEEccccccccccccEEEEEEcccHHHHHccccccccccccccHHHHHHHcccccccEEEEEccccccHHccccccccEEccccccccccccHHHccccEEEEHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHccccccccccHHHHHHEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccEccEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHcHEEEcHHHccccccccccccccHHHHHHHHHHHcHEEccccEEEEEcccccHHHHHHHHHHHHHccccEEEcccccccccccccEccccEEccHHHcccccEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEccccccc

mgyseedddtltLYVSDYefldqneesisfsvlplqwdgcdivgssemqvflhgnigdgpwnfNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQNPEASRKYIREQMLKVFCSyevepsendlldhmpisreAAERDKDLANSKFLLSFManhpetntfhedvrttekpkvivdwnededservdkdenYFAVCAIcddggdvtfcdgrclrSFHATITAGKNALCQslgytqaqidavpnflcqncvyqehqcfacgmlgssdksssqevfpcvsatcgqfyhpecvskllhpdneSLAEELRERIaagesftcpvhkcfvcqqsedmnVEDLQLAICRrcpkayhrkclpteitfsdadenNFQRAWVDLLPNNRILIYCLEHKIIselktpardhlkfpgvegkrkkEDLELLLTEEKDVASKRNIVSESFVADKTVVKKLKLAEvysgadvgmsnseikkrwprqdvhslkkpnitdtgrKSLKDiadkskpslrkdstllksrsfvvkpghrnidgskmknsisdrrrmkkvnisqpsvDAEMEKELLALIKDstssfneeefmkshivpithahhskHLLEKSITLGLVEGSVKAVRAALEMLdggcdiedakavcppeilCQIFQWKRKLDVYlapflhgmrytsfgrhftkVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEqmgkscsfrnydliqpkndfsfekrdwmtvrpeelpdgsqlimglnppfgvKASLANKFISQALKFKPKLIVLIVPQETRR

mgyseedddtlTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFLHGNIGDGPWNFNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQNPEASRKYIREQMLKVFCSYEVEpsendlldhmPISREAAERDKDLANSKFLLSFMANHpetntfhedvrttekpkvivdwnededservdkdeNYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTeitfsdadenNFQRAWVDLLPNNRILIYCLEHKIiselktpardhlkfpgvegkrkkedLELLLteekdvaskrnivsesfvadktvvkkLKLAevysgadvgmsnseikkrwprqdvhslkkpnitdtgrkslkdiadkskpslrkdstllksrsfvvkpghrnidgskmknsisdrrrmkkvnisqpsvdaeMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISqalkfkpklivlivpqetrr

MGYSEEDDDTLTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFLHGNIGDGPWNFNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQNPEASRKYIREQMLKVFCSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHPETNTFHEDVRTTEKPKVIVDWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLKFPGVEGkrkkedlelllteekDVASKRNIVSESFVADKTVVKKLKLAEVYSGADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKPSLRKDSTLLKSRSFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRR

***********TLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFLHGNIGDGPWNFNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQNPEASRKYIREQMLKVFCSYEV****************************FLLSFMA******************KVIVDW***********DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLG********EVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLK***************L**********RNIVSESFVADKTVVKKLKLAEVYSGADV****************************************************************************************************************FMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPE*L*DGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIV******

******D*DTLTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFLHGNIGDGPWNFNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQNPEASRKYIREQMLKVFC**************************************************************************DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHK***************************************************************************************************************************************************************************************************************LVEGSVKAVRAALEMLDGG*DI*DA**VCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQ****

*********TLTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFLHGNIGDGPWNFNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQNPEASRKYIREQMLKVFCSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHPETNTFHEDVRTTEKPKVIVDWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLG**********FPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLKFPGVEGKRKKEDLELLLTEEKDVASKRNIVSESFVADKTVVKKLKLAEVYSGADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKPSLRKDSTLLKSRSFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRR

*********TLTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFLHGNIGDGPWNFNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQNPEASRKYIREQMLKVFCSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMAN************************************NYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSD*SSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLKFPGVEGKRKKEDLELLLTEEKDVASKR*******************************************************************KPSLRKDSTLLKSRSFVVKPG************************SQPSVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQ****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		805	2.2.26 [Sep-21-2011]
Q55FD6		688	PHD finger-containing pro	yes	no	0.192	0.225	0.322	4e-18
Q6P2L6		1439	Histone-lysine N-methyltr	yes	no	0.151	0.084	0.325	8e-13
O88491		2588	Histone-lysine N-methyltr	no	no	0.188	0.058	0.280	4e-12
Q8BVE8		1365	Histone-lysine N-methyltr	no	no	0.186	0.109	0.301	1e-11
Q96L73		2696	Histone-lysine N-methyltr	no	no	0.188	0.056	0.280	1e-11
Q9BZ95		1437	Histone-lysine N-methyltr	no	no	0.151	0.084	0.306	2e-11
O96028		1365	Histone-lysine N-methyltr	no	no	0.152	0.090	0.305	1e-10

>sp\|Q55FD6\|Y8158_DICDI PHD finger-containing protein DDB_G0268158 OS=Dictyostelium discoideum GN=DDB_G0268158 PE=4 SV=1	Back alignment and function desciption

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 28/183 (15%)

Query: 199 DWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQ 258
           + N+D+  +R  K+E   AVC  C+  G++  CDG CLRSFH +    +N    S     
Sbjct: 122 ETNDDDKPKRPRKNE---AVCTFCEKPGELLMCDGLCLRSFHISCLKARNLYNPSSSSIS 178

Query: 259 --AQIDAVPNFLCQNCVYQEHQCFAC---GMLGSSDKSSSQEVFPCVSATCGQFYHPECV 313
               ID    + C +CV  ++ CF+C   G++G        ++  C    CG+FYH +CV
Sbjct: 179 PVTTIDGTVRWECNDCVSSQNSCFSCKKRGIIGI-------DLMKCKVHQCGKFYHYKCV 231

Query: 314 SKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHR 373
           +      +  LA+ +  +      F CP+H C VC+ S D      Q   C RCP AYH 
Sbjct: 232 A------DYKLAKLINTKTPR---FNCPLHYCSVCEVSGDGK----QSVHCFRCPTAYHV 278

Query: 374 KCL 376
            C+
Sbjct: 279 ICM 281

Dictyostelium discoideum (taxid: 44689)

>sp\|Q6P2L6\|NSD3_MOUSE Histone-lysine N-methyltransferase NSD3 OS=Mus musculus GN=Whsc1l1 PE=1 SV=2	Back alignment and function description

>sp\|O88491\|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1	Back alignment and function description

>sp\|Q8BVE8\|NSD2_MOUSE Histone-lysine N-methyltransferase NSD2 OS=Mus musculus GN=Whsc1 PE=1 SV=2	Back alignment and function description

>sp\|Q96L73\|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1	Back alignment and function description

>sp\|Q9BZ95\|NSD3_HUMAN Histone-lysine N-methyltransferase NSD3 OS=Homo sapiens GN=WHSC1L1 PE=1 SV=1	Back alignment and function description

>sp\|O96028\|NSD2_HUMAN Histone-lysine N-methyltransferase NSD2 OS=Homo sapiens GN=WHSC1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		805
225446989		1216	PREDICTED: uncharacterized protein LOC10	0.991	0.656	0.553	0.0
359494102		1260	PREDICTED: uncharacterized protein LOC10	0.987	0.630	0.540	0.0
147814981		2238	hypothetical protein VITISV_020586 [Viti	0.987	0.355	0.539	0.0
297737514		1201	unnamed protein product [Vitis vinifera]	0.934	0.626	0.532	0.0
255576262		1249	protein binding protein, putative [Ricin	0.990	0.638	0.507	0.0
356569700		1225	PREDICTED: uncharacterized protein LOC10	0.991	0.651	0.478	0.0
357459829		1289	hypothetical protein MTR_3g055370 [Medic	0.987	0.616	0.447	0.0
356499417		1065	PREDICTED: uncharacterized protein LOC10	0.982	0.742	0.457	0.0
297739138		1025	unnamed protein product [Vitis vinifera]	0.722	0.567	0.582	0.0
9758171		1332	unnamed protein product [Arabidopsis tha	0.982	0.593	0.448	0.0

>gi\|225446989\|ref\|XP_002268363.1\| PREDICTED: uncharacterized protein LOC100248222 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/827 (55%), Positives = 590/827 (71%), Gaps = 29/827 (3%)

Query: 1   MGYSEEDDDTLTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFLHGNIGDGP 60
           M  S+E+ + L   + DY F+D  +E ISFS+LPLQW   +     +M +FL G+  DG 
Sbjct: 1   MASSDEEGEILPNCIRDYYFVDYKDEPISFSILPLQWSKDENPDGLKMMIFLRGSAYDGL 60

Query: 61  WNFNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQN 120
               +QVIAWKFELS  +PEI+VLSK  NW+ LQSP+KSF+NIVRTIL+TV WL+ VK+N
Sbjct: 61  QKIYKQVIAWKFELSSVEPEIFVLSKDKNWMELQSPRKSFQNIVRTILVTVSWLHFVKRN 120

Query: 121 PEASRKYIREQMLKVFCSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANH-- 178
           PEAS K +   +LK F SYE EPSENDLLDHMP+ +EA +R++DL  SK +L+++     
Sbjct: 121 PEASGKSLWNHLLKSFSSYEFEPSENDLLDHMPLIQEAVKREEDLLKSKCMLTYLPEKTG 180

Query: 179 ------------PETNTFHEDVRTTEKPKVIVDWNEDEDSERVDKDEN--YFAVCAICDD 224
                         +N    DV T  +   I D +++++ E  D+D +  + +VCAICD+
Sbjct: 181 GETALYEGSLVLSSSNIPSSDVHTMRRYTFIDDRDDNDEDEENDEDNDELFDSVCAICDN 240

Query: 225 GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGM 284
           GG++  C+GRCLRSFHAT+ AG  + C+SLG++ AQ++A+ NFLC+NC YQ+HQCF CGM
Sbjct: 241 GGELLCCEGRCLRSFHATVDAGTESFCESLGFSDAQVEAIQNFLCKNCQYQQHQCFVCGM 300

Query: 285 LGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHK 344
           LGSS++SS  EVF C SATCG+FYHP CV+K LHP N  LA+ L+ +IA G SFTCP+HK
Sbjct: 301 LGSSNESSGAEVFRCASATCGRFYHPYCVAKRLHPMNNILAKHLQNKIAGGVSFTCPLHK 360

Query: 345 CFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFS-DADENNFQRAWVDLLPNNRI 403
           CFVC++ E+  V+DLQ A+CRRCPKAYHRKCLP  I+F    +EN  QRAW+ LLP NRI
Sbjct: 361 CFVCKRGENKGVDDLQFALCRRCPKAYHRKCLPGNISFECIYNENIMQRAWIGLLP-NRI 419

Query: 404 LIYCLEHKIISELKTPARDHLKFPGVEGKRKKEDLELLLTEEKDVASKRNIVSESFVADK 463
           LIYC+EHKI  +L+TP R+H++FP  E K KK   EL  + EK ++ KRNIVSE F A+ 
Sbjct: 420 LIYCMEHKINRKLRTPERNHIRFPDPESKGKKHVSELPSSNEKVMSKKRNIVSEIFPAES 479

Query: 464 TVVKKLKLAEVYSGADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKP-- 521
           T VK  KL EV+       S    +KR   Q      K  I D  +K L+D   KS P  
Sbjct: 480 TAVKMTKL-EVHRVVKDVDSTKFFEKRCSSQGFDPPTKQKINDATKKFLRDNV-KSVPVK 537

Query: 522 ---SLRKDSTLLKSRSFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELL 578
              S+    T    R++ +KP  +NI  SK++   S +  MK+ + SQP +DAE+E  ++
Sbjct: 538 ICASVAVKGTQSSLRNYNIKPKQQNIP-SKVEKITSLKPSMKRASSSQPLMDAELETRIV 596

Query: 579 ALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGC 638
            L+K +TSSF+ EEF +   V  +   +SK++L+ +IT G VE SVKA+R ALE L+ GC
Sbjct: 597 DLMKSTTSSFSLEEFREKQKVLCS---YSKNVLDSTITQGKVEVSVKAIRTALEKLEKGC 653

Query: 639 DIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWY 698
            IEDAKAVC PE+L QI +WKRKL VYLAPFLHGMRYTSFGRHFTKVEKL+E+VDRLHWY
Sbjct: 654 SIEDAKAVCEPEVLNQIMRWKRKLKVYLAPFLHGMRYTSFGRHFTKVEKLREVVDRLHWY 713

Query: 699 VRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEE 758
           V+ GD IVDFCCG+NDFSC+MK KL+++GKSCSF+NYDLIQPKNDFSFEKRDWM++  +E
Sbjct: 714 VQHGDMIVDFCCGSNDFSCLMKEKLDKVGKSCSFKNYDLIQPKNDFSFEKRDWMSIHLDE 773

Query: 759 LPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRR 805
           LP GSQLIMGLNPPFGVKASLANKFI +AL F+PKL++LIVP+ET+R
Sbjct: 774 LPAGSQLIMGLNPPFGVKASLANKFIDKALSFRPKLLILIVPKETKR 820

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359494102\|ref\|XP_002276879.2\| PREDICTED: uncharacterized protein LOC100243584 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147814981\|emb\|CAN61366.1\| hypothetical protein VITISV_020586 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297737514\|emb\|CBI26715.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255576262\|ref\|XP_002529024.1\| protein binding protein, putative [Ricinus communis] gi\|223531504\|gb\|EEF33335.1\| protein binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356569700\|ref\|XP_003553034.1\| PREDICTED: uncharacterized protein LOC100803073 [Glycine max]	Back alignment and taxonomy information

>gi\|357459829\|ref\|XP_003600195.1\| hypothetical protein MTR_3g055370 [Medicago truncatula] gi\|355489243\|gb\|AES70446.1\| hypothetical protein MTR_3g055370 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356499417\|ref\|XP_003518537.1\| PREDICTED: uncharacterized protein LOC100806429 [Glycine max]	Back alignment and taxonomy information

>gi\|297739138\|emb\|CBI28789.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|9758171\|dbj\|BAB08556.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		805
TAIR\|locus:2173857		1297	EDM2 "ENHANCED DOWNY MILDEW 2"	0.524	0.325	0.471	3.9e-190
TAIR\|locus:2162667		677	ELP1 "EDM2-like protein1" [Ara	0.286	0.341	0.598	1.1e-127
DICTYBASE\|DDB_G0268158		688	DDB_G0268158 "PHD zinc finger-	0.223	0.261	0.301	1.1e-17
MGI\|MGI:1276574		1365	Whsc1 "Wolf-Hirschhorn syndrom	0.108	0.063	0.351	1.3e-08
ZFIN\|ZDB-GENE-080519-2		1873	nsd1b "nuclear receptor bindin	0.125	0.053	0.352	4.6e-07
UNIPROTKB\|F1S8S0		1361	WHSC1 "Uncharacterized protein	0.105	0.062	0.330	6.2e-07
MGI\|MGI:2142581		1439	Whsc1l1 "Wolf-Hirschhorn syndr	0.137	0.077	0.300	1.6e-06
UNIPROTKB\|E1C6X8		1436	WHSC1L1 "Uncharacterized prote	0.237	0.133	0.266	2.6e-06
UNIPROTKB\|D4A3R4		1439	Whsc1l1 "Protein Whsc1l1" [Rat	0.113	0.063	0.336	3.3e-06
RGD\|1308980		1443	Whsc1l1 "Wolf-Hirschhorn syndr	0.113	0.063	0.336	3.4e-06

TAIR\|locus:2173857 EDM2 "ENHANCED DOWNY MILDEW 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1058 (377.5 bits), Expect = 3.9e-190, Sum P(2) = 3.9e-190
 Identities = 204/433 (47%), Positives = 294/433 (67%)

Query:     5 EEDDDTLTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFLHGNIGDGPWNFN 64
             EE+D ++    S+Y F D ++E +SF+ LP+QW   + V  S +  +L G   +G    +
Sbjct:     8 EEEDFSVPQSASNYYFEDDDKEPVSFARLPIQWSVEEKVDGSGLGFYLRGRSDNGLLPLH 67

Query:    65 EQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFKNIVRTILITVHWLYCVKQNPEAS 124
             + V AW+++LS  QPEI VL+K N WI L+ P+KS+  ++RT+L+T+H +  +++NP+AS
Sbjct:    68 KLVKAWRYDLSNFQPEISVLTKDNIWIKLEEPRKSYGELIRTVLVTLHSIQFLRRNPQAS 127

Query:   125 RKYIREQMLKVFCSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHPETNTF 184
              K + E++ +   SY+V+PS+NDL+DH+ +  EAA+RD++LANSKF+L+F+   P T   
Sbjct:   128 EKALWEKLTRSLRSYDVKPSQNDLVDHIGLIAEAAKRDRNLANSKFILAFLTKKP-TKRR 186

Query:   185 HEDVRTTEKPKVIVDWN----EDEDSERVDKDENYF-AVCAICDDGGDVTFCDGRCLRSF 239
               D    +   ++ D +     DED E  D+D+++F +VCAICD+GG++  C+G CLRSF
Sbjct:   187 LPDEDNAKDDFIVGDEDTYVASDED-ELDDEDDDFFESVCAICDNGGEILCCEGSCLRSF 245

Query:   240 HATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSS-SQEVFP 298
             HAT   G+++LC SLG+ + Q++A+  + C NC ++ HQCF C  LGSSD SS + EVF 
Sbjct:   246 HATKKDGEDSLCDSLGFNKMQVEAIQKYFCPNCEHKIHQCFICKNLGSSDNSSGAAEVFQ 305

Query:   299 CVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVED 358
             CVSATCG FYHP CV++ L   N+  +E L  +I AGE +TCP+HKC VC+  E     +
Sbjct:   306 CVSATCGYFYHPHCVTRRLRLGNKEESEALERQIIAGE-YTCPLHKCSVCENGEVKTDSN 364

Query:   359 LQLAICRRCPKAYHRKCLPTEITFSDA-DENNFQRAWVDLLPNNRILIYCLEHKIISELK 417
             LQ A+CRRCPK+YHRKCLP EI+F D  DE+   RAW  LL +NR+LIYC EH+I  EL 
Sbjct:   365 LQFAVCRRCPKSYHRKCLPREISFEDIEDEDILTRAWDGLL-HNRVLIYCQEHEIDEELL 423

Query:   418 TPARDHLKFPGVE 430
             TP RDH+KFP  E
Sbjct:   424 TPVRDHVKFPFTE 436

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR\|locus:2162667 ELP1 "EDM2-like protein1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0268158 DDB_G0268158 "PHD zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:1276574 Whsc1 "Wolf-Hirschhorn syndrome candidate 1 (human)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-080519-2 nsd1b "nuclear receptor binding SET domain protein 1b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S8S0 WHSC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:2142581 Whsc1l1 "Wolf-Hirschhorn syndrome candidate 1-like 1 (human)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C6X8 WHSC1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A3R4 Whsc1l1 "Protein Whsc1l1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|1308980 Whsc1l1 "Wolf-Hirschhorn syndrome candidate 1-like 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		805
pfam12047		143	pfam12047, DNMT1-RFD, Cytosine specific DNA methyl	9e-12

>gnl\|CDD\|221394 pfam12047, DNMT1-RFD, Cytosine specific DNA methyltransferase replication foci domain	Back alignment and domain information

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 13/132 (9%)

Query: 7   DDDTLTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVF--------LHGNIGD 58
           +D+     ++++   D + E  S   LP++ +  D+  S  ++            G    
Sbjct: 1   EDERPQRKLTNFALYDSDGELCSLETLPIKKNV-DLFISGVIKPIYDDEPSLEGKGVRDK 59

Query: 59  GPWNFNEQVIAWKFELSYAQPEIWVLSKQNNWIMLQSPKKSFK----NIVRTILITVHWL 114
           G   F  ++  W          I  LS    W  L  P KS+      +     +TV  L
Sbjct: 60  GLEIFLGRIKEWTISGGDDGEPIIWLSTDFAWYKLLKPSKSYAPLYEPVFEKARVTVEVL 119

Query: 115 YCVKQNPEASRK 126
             +K+NP     
Sbjct: 120 KFLKRNPRVPDL 131

This domain is part of a cytosine specific DNA methyltransferase enzyme. It functions non-catalytically to target the protein towards replication foci. This allows the DNMT1 protein to methylate the correct residues. This domain targets DMAP1 and HDAC2 to the replication foci during the S phase of mitosis. They are thought to have some importance in conversion of critical histone lysine moieties. Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		805
PF12047		146	DNMT1-RFD: Cytosine specific DNA methyltransferase	99.78
KOG4443		694	consensus Putative transcription factor HALR/MLL3,	98.04
COG5141		669	PHD zinc finger-containing protein [General functi	97.69
KOG4299		613	consensus PHD Zn-finger protein [General function	97.62
KOG4299		613	consensus PHD Zn-finger protein [General function	97.59
COG5034		271	TNG2 Chromatin remodeling protein, contains PhD zi	97.49
KOG1973		274	consensus Chromatin remodeling protein, contains P	97.46
KOG4443		694	consensus Putative transcription factor HALR/MLL3,	97.46
KOG1244		336	consensus Predicted transcription factor Requiem/N	97.46
KOG1512		381	consensus PHD Zn-finger protein [General function	97.41
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	97.31
KOG0955		1051	consensus PHD finger protein BR140/LIN-49 [General	97.28
KOG1244		336	consensus Predicted transcription factor Requiem/N	97.26
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	97.22
KOG0954		893	consensus PHD finger protein [General function pre	97.06
KOG0956		900	consensus PHD finger protein AF10 [General functio	97.02
PHA03412		241	putative methyltransferase; Provisional	96.77
PF15446		175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	96.71
KOG0383		696	consensus Predicted helicase [General function pre	96.64
PRK00274		272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.63
TIGR02987		524	met_A_Alw26 type II restriction m6 adenine DNA met	96.58
PF02384		311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.39
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	95.89
PF01170		179	UPF0020: Putative RNA methylase family UPF0020; In	95.72
KOG1473		1414	consensus Nucleosome remodeling factor, subunit NU	95.62
PRK14896		258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.59
TIGR00755		253	ksgA dimethyladenosine transferase. Alternate name	95.44
KOG4323		464	consensus Polycomb-like PHD Zn-finger protein [Gen	95.16
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	95.15
KOG0825		1134	consensus PHD Zn-finger protein [General function	95.06
KOG1512		381	consensus PHD Zn-finger protein [General function	94.75
PTZ00338		294	dimethyladenosine transferase-like protein; Provis	94.32
KOG1701		468	consensus Focal adhesion adaptor protein Paxillin	94.27
KOG0825		1134	consensus PHD Zn-finger protein [General function	93.47
KOG0383		696	consensus Predicted helicase [General function pre	92.71
PF00398		262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	92.32
PF13832		110	zf-HC5HC2H_2: PHD-zinc-finger like domain	91.78
PF13659		117	Methyltransf_26: Methyltransferase domain; PDB: 3G	91.69
TIGR00479		431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	91.06
PF13832		110	zf-HC5HC2H_2: PHD-zinc-finger like domain	91.03
KOG0957		707	consensus PHD finger protein [General function pre	90.95
COG2263		198	Predicted RNA methylase [Translation, ribosomal st	90.3
smart00650		169	rADc Ribosomal RNA adenine dimethylases.	88.06
KOG4323		464	consensus Polycomb-like PHD Zn-finger protein [Gen	86.95
PHA03411		279	putative methyltransferase; Provisional	86.19
TIGR01177		329	conserved hypothetical protein TIGR01177. This fam	85.32
KOG0957		707	consensus PHD finger protein [General function pre	85.02
PRK13168		443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	84.14
COG2265		432	TrmA SAM-dependent methyltransferases related to t	82.74
KOG0956		900	consensus PHD finger protein AF10 [General functio	82.46
TIGR03534		251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	82.37
TIGR02085		374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	82.3
PF13771		90	zf-HC5HC2H: PHD-like zinc-binding domain	81.78
KOG1973		274	consensus Chromatin remodeling protein, contains P	80.81

>PF12047 DNMT1-RFD: Cytosine specific DNA methyltransferase replication foci domain; InterPro: IPR022702 This domain is part of a cytosine specific DNA methyltransferase enzyme	Back alignment and domain information

Probab=99.78  E-value=3.4e-20  Score=179.20  Aligned_cols=131  Identities=24%  Similarity=0.401  Sum_probs=100.8

Q ss_pred             CCCccccccceeEeecCCCCeeEeEeeeeeecccccCCCCcceEEE----------ecccCCCccceeeeEEEEeeeccC
Q 003658            7 DDDTLTLYVSDYEFLDQNEESISFSVLPLQWDGCDIVGSSEMQVFL----------HGNIGDGPWNFNEQVIAWKFELSY   76 (805)
Q Consensus         7 ~~e~~~~~v~~y~f~d~~~~~v~fs~lp~~~~~~~~~~~~~~~v~l----------~g~~d~gl~~v~~~v~aW~~~l~~   76 (805)
                      |++.++..++||+|.|+++++|+|+.||++|+...-+.|..+.+++          +|..++|++.++.+|++|.+++..
T Consensus         1 ~~~~p~r~L~~f~~~d~~~~~~~le~l~~~~~~~~~~sG~v~~~~~~~~~~~~~~~~g~~~~g~~~~l~~I~~W~i~~~~   80 (146)
T PF12047_consen    1 EDDLPMRSLDDFSFYDSDGEPVSLELLPIEWNVDLFASGVVKPIGLWGDDEPSPKEKGVRDEGVRIRLGPIKEWWIDGGD   80 (146)
T ss_dssp             -SSS-EEEEEEEEEEETTSBB--STTSTTTTT--EEEEEEEEETT-------SSTS-SEEEEC----ES-ECEEEEE-SS
T ss_pred             CCCCcceEEEEEEEEeCCCCEEeeeeccccCCCcccceEEecccCcccccCccccccCccCCCcccceeceeEEEEEecC
Confidence            5788899999999999999999999999999998777777788887          799999999999999999999998


Q ss_pred             CcceEEEEecCCceeEcCCCCch----HHHHHHHHHhhhheehhhccCcccchhHHHHHHHhhcc
Q 003658           77 AQPEIWVLSKQNNWIMLQSPKKS----FKNIVRTILITVHWLYCVKQNPEASRKYIREQMLKVFC  137 (805)
Q Consensus        77 ~~p~i~vls~~~~Wi~L~kPrk~----ye~~ir~vlitv~~LhfvkknP~~s~ksl~~~L~K~F~  137 (805)
                      ..|.+.+|+.+.+|++|+||+++    |+.++|++.||++++|+|++||..+..++|++|.++++
T Consensus        81 ~~~~~i~i~T~~awY~L~kPs~~Y~~~y~~~~~~~~l~~~v~~~l~~~~~~~~~s~~d~l~~v~~  145 (146)
T PF12047_consen   81 DGPPIIWISTDYAWYRLMKPSKSYAPWYEPFLRKARLTVRVIHFLKKNPRASDLSYEDLLARVFR  145 (146)
T ss_dssp             SSS-EEEEEESS-EEEE-SB-TTTHHHHCCHHHHHHHHHHHHHHHHHHT---T--HHHHHHHHHH
T ss_pred             CCccEEEEEECCcEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHHhc
Confidence            88899999999999999999999    56788999999999999999999999999999999864

It functions non-catalytically to target the protein towards replication foci. This allows the DNMT1 protein to methylate the correct residues. This domain targets DMAP1 and HDAC2 to the replication foci during the S phase of mitosis. They are thought to have some importance in conversion of critical histone lysine moieties []. A structure exists for the human cytosine specific DNA methyltransferase replication foci domain. ; PDB: 3AV6_A 3AV5_A 3AV4_A 3EPZ_B.

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]	Back alignment and domain information

>COG5141 PHD zinc finger-containing protein [General function prediction only]	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]	Back alignment and domain information

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]	Back alignment and domain information

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]	Back alignment and domain information

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>smart00249 PHD PHD zinc finger	Back alignment and domain information

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]	Back alignment and domain information

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0954 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]	Back alignment and domain information

>PHA03412 putative methyltransferase; Provisional	Back alignment and domain information

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed	Back alignment and domain information

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family	Back alignment and domain information

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2	Back alignment and domain information

>smart00249 PHD PHD zinc finger	Back alignment and domain information

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase	Back alignment and domain information

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional	Back alignment and domain information

>TIGR00755 ksgA dimethyladenosine transferase	Back alignment and domain information

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PTZ00338 dimethyladenosine transferase-like protein; Provisional	Back alignment and domain information

>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e	Back alignment and domain information

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain	Back alignment and domain information

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A	Back alignment and domain information

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA	Back alignment and domain information

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain	Back alignment and domain information

>KOG0957 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00650 rADc Ribosomal RNA adenine dimethylases	Back alignment and domain information

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PHA03411 putative methyltransferase; Provisional	Back alignment and domain information

>TIGR01177 conserved hypothetical protein TIGR01177	Back alignment and domain information

>KOG0957 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed	Back alignment and domain information

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]	Back alignment and domain information

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific	Back alignment and domain information

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB	Back alignment and domain information

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain	Back alignment and domain information

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		805
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3v43_A		112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	6e-07
2ysm_A		111	Myeloid/lymphoid or mixed-lineage leukemia protein	5e-06
2kwj_A		114	Zinc finger protein DPF3; acetyl-lysine, transcrip	5e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 86/674 (12%), Positives = 182/674 (27%), Gaps = 215/674 (31%)

Query: 126 KYIREQMLKVFCSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHPETNTFH 185
           K +++    +    E+        DH+ +S++A         +  L   + +  E     
Sbjct: 36  KDVQDMPKSILSKEEI--------DHIIMSKDAVSG------TLRLFWTLLSKQE-EMVQ 80

Query: 186 EDVRTTEKP--KVIVDWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHAT- 242
           + V    +   K ++   + E  +       Y        +  D  + D +    ++ + 
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-------IEQRDRLYNDNQVFAKYNVSR 133

Query: 243 ---ITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSS------- 292
                  + AL +        +    N L    +         G+LGS  K+        
Sbjct: 134 LQPYLKLRQALLE--------LRPAKNVL----ID--------GVLGSG-KTWVALDVCL 172

Query: 293 ---SQEVFPC-VS-ATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFV 347
               Q      +          PE V ++L    + L  ++     +    +  +     
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNI----- 223

Query: 348 CQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRIL--- 404
                 + +  +Q  + R      +  CL   +   +               N +     
Sbjct: 224 -----KLRIHSIQAELRRLLKSKPYENCL---LVLLNV--------Q-----NAKAWNAF 262

Query: 405 -IYCLEHKIISELKTPARDHLKFPGVEGKRKK----EDLELLLTEEKDVASKRNIVSESF 459
            + C   KI+  L T  R       +          +   + LT ++          +S 
Sbjct: 263 NLSC---KIL--LTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDE---------VKSL 306

Query: 460 VADKTVVKKLKL-AEVYSG-----ADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLK 513
           +      +   L  EV +      + +  S  +    W        K  N        L 
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-----WKHVNC-----DKLT 356

Query: 514 DIADKSKPSLRKDSTLLKSR--SFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDA 571
            I + S   L  +    +       V P                       +I  P+   
Sbjct: 357 TIIESSLNVL--EPAEYRKMFDRLSVFP--------------------PSAHI--PT--- 389

Query: 572 EMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAAL 631
                LL+LI       +    +               L + S    LVE   K    ++
Sbjct: 390 ----ILLSLIWFDVIKSDVMVVVN-------------KLHKYS----LVEKQPKESTISI 428

Query: 632 EML--DGGCDIEDAKAVCPPEILCQIFQWKRKLDVY--LAPFLHGMRYTSFGRHFTKVEK 687
             +  +    +E+  A+     +   +   +  D    + P+L    Y+  G H   +E 
Sbjct: 429 PSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCS-----------FRNY- 735
            + +      +       +DF      F   ++ K+     + +            + Y 
Sbjct: 487 PERMTLFRMVF-------LDF-----RF---LEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 736 DLIQPKNDFSFEKR 749
             I   ND  +E+ 
Sbjct: 532 PYIC-DNDPKYERL 544

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112	Back alignment and structure

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111	Back alignment and structure

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		805
d1mm2a_		61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	97.97
d1fp0a1		70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	97.91
d2okca1		425	Type I restriction enzyme StySJI M protein {Bacter	97.04
d1wesa_		71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	96.52
d1wepa_		79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	96.42
d2f8la1		328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.19
d1weva_		88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	96.18
d1we9a_		64	PHD finger protein At5g26210 {Thale cress (Arabido	96.17
d1f62a_		51	Williams-Beuren syndrome transcription factor, WST	96.07
d2ih2a1		223	DNA methylase TaqI, N-terminal domain {Thermus aqu	95.86
d1weea_		72	PHD finger protein At1g33420 {Thale cress (Arabido	95.45
d1fp0a1		70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	95.2
d2pnxa1		51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	94.93
d1mm2a_		61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	94.8
d1wewa_		78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	94.38
d1weva_		88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	94.24
d1f62a_		51	Williams-Beuren syndrome transcription factor, WST	93.76
d1wema_		76	Death associated transcription factor 1, Datf1 (DI	93.51
d1ne2a_		197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	89.46
d1wila_		89	Hypothetical protein KIAA1045 {Human (Homo sapiens	88.64
d1wy7a1		201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	88.07
d1we9a_		64	PHD finger protein At5g26210 {Thale cress (Arabido	86.8
d1wepa_		79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	84.92
d1wema_		76	Death associated transcription factor 1, Datf1 (DI	83.07
d1weea_		72	PHD finger protein At1g33420 {Thale cress (Arabido	80.92

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.1e-06  Score=60.43  Aligned_cols=52  Identities=27%  Similarity=0.731  Sum_probs=39.8

Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf             5788654321377896010275323355453125865311136986211398996106545224
Q 003658          212 DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ  275 (805)
Q Consensus       212 ed~~d~vC~IC~~gGeLL~CdG~C~RsFH~~C~~g~~s~C~sLglt~~ev~~~~~w~C~eC~~g  275 (805)
                      ++.++++|.+|.++|+||.|+ .|.++||..|+.        ..++  .+ +.+.|+|+.|...
T Consensus         5 ~d~~~~~C~~C~~~g~lv~Cd-~C~~~~H~~C~~--------~~~~--~~-~~~~W~C~~C~~~   56 (61)
T d1mm2a_           5 SDHHMEFCRVCKDGGELLCCD-TCPSSYHIHCLN--------PPLP--EI-PNGEWLCPRCTCP   56 (61)
T ss_dssp             SCSSCSSCTTTCCCSSCBCCS-SSCCCBCSSSSS--------SCCS--SC-CSSCCCCTTTTTT
T ss_pred             CCCCCCCCCCCCCCCEEEEEC-CCCCCCCHHHCC--------CCCC--CC-CCCCEECCCCCCC
T ss_conf             668868986789979588869-999607611458--------8857--58-9976899788384

PyMOL of d1mm2a_

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}	Back information, alignment and structure

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure