Citrus Sinensis ID: 003727

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800

MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYFS

cccccccccEEEEEccccEEEEEcccccccccccccEEEEEcccEEEEcccHHHHHcccccEEEccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccHHcccHHHHHHHHHccEEEEEcccccHHHHHHHHHccccccccccEEEEcccccccccccccEEEEcccccccHHHHHHHHHHHHcccccccEEEccccccccccccHHHHccccEEEEccccHHHHHHHHHHHHcccccEEEcccccccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHcccccccEEccccEEEEcccccHHHHccccHHHHHHHccccccccccEEEEEEEEEEccccccccccEEEEEEc

cccccccccEEEEEcccEEEEEccccccccccccccEEEEEcccEEEEcccHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHEHHHHHHHHcccccccHHHccccccccccEEEEEcHHHHHHHHHccEEEEcccHHHHHHHHHHHHHccccccccEEEEEccccEEEccccccEEccHHHccccHHHHHHHHHHHHcccccEEEEcccccccHHHHccHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEEcccccccEEEEEEcccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccEEEEEccccccccccccccHHHHHHHHHHcccccHHcccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccEcccEEEEEEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHccccHHHHccccHHHHHHHHHccccccccEEEEEEEEEcccccccccccEEEEEEc

mtelndgkprkvknarpysfsidedttnysayekggivtqvkqpkiinfkplrealkdpgdfllsdfskfdrppvlHLAFQALDKFIQElgrfpvagseEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKAcsgkfhpllqffyfdsveslpsepldprdlqplnsrydaQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGvscgnqgkltitdddvieksnlsrqflfrdwnigqakSTVAASAAALinphlntealqiranpetenvfndTFWENLNVVVNALDNVNARLYIDQRCLYfqkpllesgtlgakcntqmviphltenygasrdppekqapmctvhsfphnidhCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLtftfpenattsngtpfwsapkrfprplqfsvdDLSHLQFLMAASILRAetygipipdwvkspVKLADAVnkvivpdfqpkenvkietdekatsmstgsiDDAVVINELLQKLEKCQkqlptgykmnpiqfekdddtnFHMDLIAGLANMrarnygipevdKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVldgghkleDYRNTFANlalplfsmaepvppkvfkhqdmswtvwdrwilrdnpTLRQLLQWLQDKGLNAYSISYGScllfnsmfprhkermdkKVVDLVRDVakaelppyrqhFDVVVAcvdeddndidipqisiyfs

mtelndgkprkvknarpysfsidedttnySAYEkggivtqvkqpKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFtfpenattsngtpfwsapKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKvivpdfqpkenvkietdekatsmstgsidDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKaelppyrqhFDVVVACVDEDdndidipqisiyfs

MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVaasaaaLINPHLNTEALQIRANPETENVFNDTFWEnlnvvvnaldnvnaRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINellqklekcqkqlPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYFS

*************************TTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGR************IISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSV*******************YDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENY************MCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLT*******************NLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQ********************IDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIY**

MTELN*GKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKN****QARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDF*****************STGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYFS

***LNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEK*********DDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYFS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		800	2.2.26 [Sep-21-2011]
P93028		1080	Ubiquitin-activating enzy	yes	no	0.978	0.725	0.803	0.0
P92974		1077	Ubiquitin-activating enzy	no	no	0.98	0.727	0.783	0.0
P20973		1051	Ubiquitin-activating enzy	N/A	no	0.998	0.760	0.78	0.0
P31251		1051	Ubiquitin-activating enzy	N/A	no	0.998	0.760	0.778	0.0
P31252		1053	Ubiquitin-activating enzy	N/A	no	0.988	0.751	0.748	0.0
P52495		1021	Ubiquitin-activating enzy	N/A	no	0.972	0.761	0.448	0.0
P22314		1058	Ubiquitin-like modifier-a	yes	no	0.975	0.737	0.440	0.0
Q29504		1058	Ubiquitin-like modifier-a	yes	no	0.976	0.738	0.438	0.0
A3KMV5		1058	Ubiquitin-like modifier-a	yes	no	0.976	0.738	0.435	0.0
P22515		1024	Ubiquitin-activating enzy	yes	no	0.986	0.770	0.438	0.0

>sp\|P93028\|UBE11_ARATH Ubiquitin-activating enzyme E1 1 OS=Arabidopsis thaliana GN=UBA1 PE=1 SV=1	Back alignment and function desciption

 Score = 1366 bits (3535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/799 (80%), Positives = 718/799 (89%)

Query: 1    MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPG 60
            MTELNDGKPRK+K+ RPYSF++DEDTTNY  Y KGGIVTQVKQPK++NFKPLREALKDPG
Sbjct: 281  MTELNDGKPRKIKSTRPYSFTLDEDTTNYGTYVKGGIVTQVKQPKLLNFKPLREALKDPG 340

Query: 61   DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADER 120
            DFL SDFSKFDRPP+LHLAFQALD F  E GRFPVAGSEEDAQK+IS+ T IN    D +
Sbjct: 341  DFLFSDFSKFDRPPLLHLAFQALDHFKAEAGRFPVAGSEEDAQKLISIATAINTGQGDLK 400

Query: 121  VEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPS 180
            VE +D KLL HF+FGA+AVLNPMAAMFGGIVGQEVVKACSGKFHPL QFFYFDSVESLPS
Sbjct: 401  VENVDQKLLRHFSFGAKAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPS 460

Query: 181  EPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGN 240
            EP+D  D  P NSRYDAQISVFG+K QKKLE+AKVF VGSGALGCEFLKNLALMGVSCG+
Sbjct: 461  EPVDSSDFAPRNSRYDAQISVFGAKFQKKLEDAKVFTVGSGALGCEFLKNLALMGVSCGS 520

Query: 241  QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPET 300
            QGKLT+TDDD+IEKSNLSRQFLFRDWNIGQAKSTVAASAAA+INP  N EALQ R   ET
Sbjct: 521  QGKLTVTDDDIIEKSNLSRQFLFRDWNIGQAKSTVAASAAAVINPRFNIEALQNRVGAET 580

Query: 301  ENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE 360
            ENVF+D FWENL VVVNALDNVNARLY+D RCLYFQKPLLESGTLG KCNTQ VIPHLTE
Sbjct: 581  ENVFDDAFWENLTVVVNALDNVNARLYVDSRCLYFQKPLLESGTLGTKCNTQSVIPHLTE 640

Query: 361  NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASA 420
            NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYL+SP EY ++
Sbjct: 641  NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSSPVEYTNS 700

Query: 421  MKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATT 480
            M +AGDAQARD L+R++ECL+KE+CETFQDC+TWARLRFEDYF +RVKQL +TFPE+A T
Sbjct: 701  MMSAGDAQARDTLERIVECLEKEKCETFQDCLTWARLRFEDYFVNRVKQLIYTFPEDAAT 760

Query: 481  SNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVN 540
            S G PFWSAPKRFPRPLQ+S  D S L F+ A +ILRAET+GIPIP+W K+P + A+AV+
Sbjct: 761  STGAPFWSAPKRFPRPLQYSSSDPSLLNFITATAILRAETFGIPIPEWTKNPKEAAEAVD 820

Query: 541  KVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQF 600
            +VIVPDF+P+++ KI TDEKAT+++T S+DDA VI++L+ K+++C+  L   ++M PIQF
Sbjct: 821  RVIVPDFEPRQDAKIVTDEKATTLTTASVDDAAVIDDLIAKIDQCRHNLSPDFRMKPIQF 880

Query: 601  EKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 660
            EKDDDTN+HMD+IAGLANMRARNY IPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL
Sbjct: 881  EKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 940

Query: 661  YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQL 720
            YKVLDGGHK+E YRNTFANLALPLFSMAEP+PPKV KH+DM+WTVWDRW+L+ NPTLR++
Sbjct: 941  YKVLDGGHKVEAYRNTFANLALPLFSMAEPLPPKVVKHRDMAWTVWDRWVLKGNPTLREV 1000

Query: 721  LQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVV 780
            LQWL+DKGL+AYSIS GSCLLFNSMF RHKERMDKKVVDL RDVAK ELPPYR H DVVV
Sbjct: 1001 LQWLEDKGLSAYSISCGSCLLFNSMFTRHKERMDKKVVDLARDVAKVELPPYRNHLDVVV 1060

Query: 781  ACVDEDDNDIDIPQISIYF 799
            AC DEDDND+DIP +SIYF
Sbjct: 1061 ACEDEDDNDVDIPLVSIYF 1079

Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMP.
Arabidopsis thaliana (taxid: 3702)

>sp\|P92974\|UBE12_ARATH Ubiquitin-activating enzyme E1 2 OS=Arabidopsis thaliana GN=UBA2 PE=2 SV=1	Back alignment and function description

>sp\|P20973\|UBE11_WHEAT Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1	Back alignment and function description

>sp\|P31251\|UBE12_WHEAT Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1	Back alignment and function description

>sp\|P31252\|UBE13_WHEAT Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1	Back alignment and function description

>sp\|P52495\|UBA1_CANAW Ubiquitin-activating enzyme E1 1 OS=Candida albicans (strain WO-1) GN=UBA1 PE=3 SV=2	Back alignment and function description

>sp\|P22314\|UBA1_HUMAN Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3	Back alignment and function description

>sp\|Q29504\|UBA1_RABIT Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1	Back alignment and function description

>sp\|A3KMV5\|UBA1_BOVIN Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1	Back alignment and function description

>sp\|P22515\|UBA1_YEAST Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBA1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
341657646		1094	ubiquitin activating enzyme E1 [Camellia	0.988	0.723	0.874	0.0
1808656		1080	Ubiquitin activating enzyme E1 [Nicotian	0.998	0.739	0.864	0.0
38142361		1080	ubiquitin activating enzyme 2 [Nicotiana	0.983	0.728	0.864	0.0
38142359		1080	ubiquitin activating enzyme 1 [Nicotiana	0.983	0.728	0.863	0.0
255571425		1100	ubiquitin-activating enzyme E1, putative	0.988	0.719	0.864	0.0
297735630		1066	unnamed protein product [Vitis vinifera]	0.988	0.742	0.866	0.0
359481277		1111	PREDICTED: ubiquitin-activating enzyme E	0.987	0.711	0.866	0.0
224059848		1018	predicted protein [Populus trichocarpa]	0.99	0.777	0.833	0.0
224103883		1018	predicted protein [Populus trichocarpa]	0.99	0.777	0.828	0.0
359478703		1100	PREDICTED: ubiquitin-activating enzyme E	0.982	0.714	0.853	0.0

>gi\|341657646\|gb\|AEK86562.1\| ubiquitin activating enzyme E1 [Camellia sinensis]	Back alignment and taxonomy information

 Score = 1490 bits (3858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/799 (87%), Positives = 760/799 (95%)

Query: 1    MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPG 60
            M ELNDGKPRKVKNARPYSF+I+EDTTNY+AYEKGGIVTQVKQPK +NFKPLREALKDPG
Sbjct: 295  MPELNDGKPRKVKNARPYSFTIEEDTTNYAAYEKGGIVTQVKQPKALNFKPLREALKDPG 354

Query: 61   DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADER 120
            DFLLSDFSKFDRPP+LHLAFQALD +I ELGRFP+AGSEEDAQK+ISL TNIN++ A  +
Sbjct: 355  DFLLSDFSKFDRPPLLHLAFQALDMYISELGRFPIAGSEEDAQKLISLATNINNSSASGK 414

Query: 121  VEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPS 180
            +EEID KLL +F FGA+AVLNPMAAMFGGIVGQEVVKACSGKFHPL QFFYFDS+ESLP 
Sbjct: 415  LEEIDPKLLRNFVFGAKAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSIESLPP 474

Query: 181  EPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGN 240
            EPLDP DL+PLNSRYDAQISVFG+KLQKKLE+AKVF+VGSGALGCEFLKN+ALMGV CGN
Sbjct: 475  EPLDPSDLKPLNSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVCCGN 534

Query: 241  QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPET 300
            QGKLTITDDDVIEKSNL+RQFLFRDWNIGQAKSTVAASAA+LINPHL+ +ALQ RA+PET
Sbjct: 535  QGKLTITDDDVIEKSNLTRQFLFRDWNIGQAKSTVAASAASLINPHLHIDALQNRASPET 594

Query: 301  ENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE 360
            ENVF+DTFWENLNVV+NALDNV+ARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE
Sbjct: 595  ENVFHDTFWENLNVVINALDNVSARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE 654

Query: 361  NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASA 420
            NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSP EY SA
Sbjct: 655  NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPNEYTSA 714

Query: 421  MKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATT 480
            MKNAGDAQARDNL+RV+ECLDKE+CETFQDCITWARL+FEDYFA+RVKQLTFTFPE+A T
Sbjct: 715  MKNAGDAQARDNLERVIECLDKEKCETFQDCITWARLKFEDYFANRVKQLTFTFPEDAVT 774

Query: 481  SNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVN 540
            S+GTPFWSAPKRFPRPLQFSVDD SHL F+ AASILRAET+GIPIPDWVKS  KLADAVN
Sbjct: 775  SSGTPFWSAPKRFPRPLQFSVDDTSHLHFVTAASILRAETFGIPIPDWVKSSKKLADAVN 834

Query: 541  KVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQF 600
            +VIVPDFQPK++VKI TDEKATS+ST S+DDAVVINEL+ KLE C K+L  G+KMNPIQF
Sbjct: 835  RVIVPDFQPKKDVKIVTDEKATSLSTASMDDAVVINELVMKLEICHKKLMPGFKMNPIQF 894

Query: 601  EKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 660
            EKDDDTN+HMDLIAGLANMRARNY IPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL
Sbjct: 895  EKDDDTNYHMDLIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 954

Query: 661  YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQL 720
            YK LDGGHKLEDYRNTFANLALPLFSMAEP+PPKV KHQDMSWTVWDRWI+ DNPTLR+L
Sbjct: 955  YKALDGGHKLEDYRNTFANLALPLFSMAEPLPPKVIKHQDMSWTVWDRWIVGDNPTLREL 1014

Query: 721  LQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVV 780
            LQWL+DK LNAYSIS+GSCLL+NSMFPRH+ERMD+K+VDL R+VAKAELPPYR+HFDVVV
Sbjct: 1015 LQWLKDKALNAYSISFGSCLLYNSMFPRHRERMDRKMVDLAREVAKAELPPYRRHFDVVV 1074

Query: 781  ACVDEDDNDIDIPQISIYF 799
            AC D++DND+DIPQ+SIYF
Sbjct: 1075 ACEDDEDNDVDIPQVSIYF 1093

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|1808656\|emb\|CAA71762.1\| Ubiquitin activating enzyme E1 [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|38142361\|dbj\|BAD00984.1\| ubiquitin activating enzyme 2 [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|38142359\|dbj\|BAD00983.1\| ubiquitin activating enzyme 1 [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|255571425\|ref\|XP_002526660.1\| ubiquitin-activating enzyme E1, putative [Ricinus communis] gi\|223533960\|gb\|EEF35682.1\| ubiquitin-activating enzyme E1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297735630\|emb\|CBI18124.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359481277\|ref\|XP_002267395.2\| PREDICTED: ubiquitin-activating enzyme E1 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224059848\|ref\|XP_002300000.1\| predicted protein [Populus trichocarpa] gi\|222847258\|gb\|EEE84805.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224103883\|ref\|XP_002313231.1\| predicted protein [Populus trichocarpa] gi\|222849639\|gb\|EEE87186.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359478703\|ref\|XP_002275617.2\| PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
TAIR\|locus:2060854		1080	UBA1 "ubiquitin-activating enz	0.998	0.739	0.774	0.0
TAIR\|locus:2164270		1077	UBA 2 "ubiquitin activating en	1.0	0.742	0.755	0.0
CGD\|CAL0005518		1021	UBA1 [Candida albicans (taxid:	0.98	0.767	0.430	4.6e-176
UNIPROTKB\|P22314		1058	UBA1 "Ubiquitin-like modifier-	0.98	0.741	0.427	2.3e-174
UNIPROTKB\|G4MZI8		1037	MGG_01409 "Ubiquitin-activatin	0.978	0.755	0.434	4.7e-174
ASPGD\|ASPL0000051011		1033	AN10266 [Emericella nidulans (	0.982	0.760	0.430	9.9e-174
UNIPROTKB\|A3KMV5		1058	UBA1 "Ubiquitin-like modifier-	0.981	0.741	0.423	1.6e-173
SGD\|S000001693		1024	UBA1 "Ubiquitin activating enz	0.988	0.772	0.423	1.6e-173
UNIPROTKB\|F1RWX8		1058	UBA1 "Uncharacterized protein"	0.982	0.742	0.421	3.8e-172
RGD\|1359327		1058	Uba1 "ubiquitin-like modifier	0.981	0.741	0.419	4.4e-171

TAIR\|locus:2060854 UBA1 "ubiquitin-activating enzyme 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3351 (1184.7 bits), Expect = 0., P = 0.
 Identities = 619/799 (77%), Positives = 689/799 (86%)

Query:     1 MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPG 60
             MTELNDGKPRK+K+ RPYSF++DEDTTNY  Y KGGIVTQVKQPK++NFKPLREALKDPG
Sbjct:   281 MTELNDGKPRKIKSTRPYSFTLDEDTTNYGTYVKGGIVTQVKQPKLLNFKPLREALKDPG 340

Query:    61 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADER 120
             DFL SDFSKFDRPP+LHLAFQALD F  E GRFPVAGSEEDAQK+IS+ T IN    D +
Sbjct:   341 DFLFSDFSKFDRPPLLHLAFQALDHFKAEAGRFPVAGSEEDAQKLISIATAINTGQGDLK 400

Query:   121 VEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPS 180
             VE +D KLL HF+FGA+AVLNPMAAMFGGIVGQEVVKACSGKFHPL QFFYFDSVESLPS
Sbjct:   401 VENVDQKLLRHFSFGAKAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPS 460

Query:   181 EPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGN 240
             EP+D  D  P NSRYDAQISVFG+K QKKLE+AKVF VGSGALGCEFLKNLALMGVSCG+
Sbjct:   461 EPVDSSDFAPRNSRYDAQISVFGAKFQKKLEDAKVFTVGSGALGCEFLKNLALMGVSCGS 520

Query:   241 QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPET 300
             QGKLT+TDDD+IEKSNLSRQFLFRDWNIGQAKSTV      +INP  N EALQ R   ET
Sbjct:   521 QGKLTVTDDDIIEKSNLSRQFLFRDWNIGQAKSTVAASAAAVINPRFNIEALQNRVGAET 580

Query:   301 ENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE 360
             ENVF+D FWE              RLY+D RCLYFQKPLLESGTLG KCNTQ VIPHLTE
Sbjct:   581 ENVFDDAFWENLTVVVNALDNVNARLYVDSRCLYFQKPLLESGTLGTKCNTQSVIPHLTE 640

Query:   361 NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASA 420
             NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYL+SP EY ++
Sbjct:   641 NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSSPVEYTNS 700

Query:   421 MKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATT 480
             M +AGDAQARD L+R++ECL+KE+CETFQDC+TWARLRFEDYF +RVKQL +TFPE+A T
Sbjct:   701 MMSAGDAQARDTLERIVECLEKEKCETFQDCLTWARLRFEDYFVNRVKQLIYTFPEDAAT 760

Query:   481 SNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVN 540
             S G PFWSAPKRFPRPLQ+S  D S L F+ A +ILRAET+GIPIP+W K+P + A+AV+
Sbjct:   761 STGAPFWSAPKRFPRPLQYSSSDPSLLNFITATAILRAETFGIPIPEWTKNPKEAAEAVD 820

Query:   541 KVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINXXXXXXXXXXXXXPTGYKMNPIQF 600
             +VIVPDF+P+++ KI TDEKAT+++T S+DDA VI+                ++M PIQF
Sbjct:   821 RVIVPDFEPRQDAKIVTDEKATTLTTASVDDAAVIDDLIAKIDQCRHNLSPDFRMKPIQF 880

Query:   601 EKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 660
             EKDDDTN+HMD+IAGLANMRARNY IPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL
Sbjct:   881 EKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 940

Query:   661 YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQL 720
             YKVLDGGHK+E YRNTFANLALPLFSMAEP+PPKV KH+DM+WTVWDRW+L+ NPTLR++
Sbjct:   941 YKVLDGGHKVEAYRNTFANLALPLFSMAEPLPPKVVKHRDMAWTVWDRWVLKGNPTLREV 1000

Query:   721 LQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVV 780
             LQWL+DKGL+AYSIS GSCLLFNSMF RHKERMDKKVVDL RDVAK ELPPYR H DVVV
Sbjct:  1001 LQWLEDKGLSAYSISCGSCLLFNSMFTRHKERMDKKVVDLARDVAKVELPPYRNHLDVVV 1060

Query:   781 ACVDEDDNDIDIPQISIYF 799
             AC DEDDND+DIP +SIYF
Sbjct:  1061 ACEDEDDNDVDIPLVSIYF 1079

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004839 "ubiquitin activating enzyme activity" evidence=ISS;IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0051707 "response to other organism" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR\|locus:2164270 UBA 2 "ubiquitin activating enzyme 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0005518 UBA1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|P22314 UBA1 "Ubiquitin-like modifier-activating enzyme 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|G4MZI8 MGG_01409 "Ubiquitin-activating enzyme E1 1" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000051011 AN10266 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|A3KMV5 UBA1 "Ubiquitin-like modifier-activating enzyme 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

SGD\|S000001693 UBA1 "Ubiquitin activating enzyme (E1)" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RWX8 UBA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1359327 Uba1 "ubiquitin-like modifier activating enzyme 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93028	UBE11_ARATH	No assigned EC number	0.8035	0.9787	0.725	yes	no
P31252	UBE13_WHEAT	No assigned EC number	0.7484	0.9887	0.7511	N/A	no
P31251	UBE12_WHEAT	No assigned EC number	0.7787	0.9987	0.7602	N/A	no
P20973	UBE11_WHEAT	No assigned EC number	0.78	0.9987	0.7602	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		800
TIGR01408		1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	0.0
cd01490		435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	1e-169
cd01490		435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	9e-76
cd01484		234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	6e-64
pfam09358		124	pfam09358, UBA_e1_C, Ubiquitin-activating enzyme e	3e-51
cd01489		312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	2e-43
smart00985		128	smart00985, UBA_e1_C, Ubiquitin-activating enzyme	8e-42
pfam00899		134	pfam00899, ThiF, ThiF family	5e-40
cd00757		228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	4e-35
COG0476		254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	1e-34
cd01488		291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	4e-33
cd01483		143	cd01483, E1_enzyme_family, Superfamily of activati	9e-32
pfam02134		66	pfam02134, UBACT, Repeat in ubiquitin-activating (	6e-25
TIGR02356		202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	9e-25
PRK05690		245	PRK05690, PRK05690, molybdopterin biosynthesis pro	1e-23
TIGR02355		240	TIGR02355, moeB, molybdopterin synthase sulfurylas	4e-22
PRK08762		376	PRK08762, PRK08762, molybdopterin biosynthesis pro	3e-21
cd01491		286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	6e-20
pfam10585		44	pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e	6e-18
PRK08644		212	PRK08644, PRK08644, thiamine biosynthesis protein	3e-17
cd01492		197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	5e-16
cd00755		231	cd00755, YgdL_like, Family of activating enzymes (	6e-16
PRK12475		338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	7e-15
PRK05597		355	PRK05597, PRK05597, molybdopterin biosynthesis pro	8e-15
PRK08328		231	PRK08328, PRK08328, hypothetical protein; Provisio	2e-14
PRK05600		370	PRK05600, PRK05600, thiamine biosynthesis protein	3e-14
PRK07688		339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	5e-14
cd01491		286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	1e-13
COG1179		263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	1e-13
cd01489		312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	2e-13
PRK07878		392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	2e-13
cd01484		234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	5e-13
cd01493		425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	8e-13
TIGR02354		200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	3e-12
cd01485		198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	5e-12
cd01491		286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	1e-11
PRK07411		390	PRK07411, PRK07411, hypothetical protein; Validate	5e-11
cd01487		174	cd01487, E1_ThiF_like, E1_ThiF_like	9e-11
PRK08223		287	PRK08223, PRK08223, hypothetical protein; Validate	1e-09
TIGR01408		1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	3e-08
PRK14852		989	PRK14852, PRK14852, hypothetical protein; Provisio	2e-07
PRK14851		679	PRK14851, PRK14851, hypothetical protein; Provisio	2e-07
cd01485		198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	5e-07
pfam02134		66	pfam02134, UBACT, Repeat in ubiquitin-activating (	7e-07
TIGR03736		244	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family pr	8e-06
PRK15116		268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	4e-05
cd01492		197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	6e-05
cd01486		307	cd01486, Apg7, Apg7 is an E1-like protein, that ac	2e-04
cd01488		291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	6e-04
PTZ00245		287	PTZ00245, PTZ00245, ubiquitin activating enzyme; P	0.004

>gnl\|CDD\|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1	Back alignment and domain information

 Score = 1218 bits (3154), Expect = 0.0
 Identities = 394/803 (49%), Positives = 529/803 (65%), Gaps = 7/803 (0%)

Query: 1    MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPG 60
            MT LNDG PRK+    PYSFSI + T     Y  GGI TQVK PK + FK LRE LKDP 
Sbjct: 210  MTGLNDGSPRKITVISPYSFSIGDTTE-LGPYLHGGIATQVKTPKTVFFKSLREQLKDP- 267

Query: 61   DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADER 120
              L+ DFSK +RPP +H AFQALD+F ++  R P  G ++DA++++ L T+I++ L +E+
Sbjct: 268  KCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATSISETL-EEK 326

Query: 121  VEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPS 180
            V ++D KL+   ++ A+  L+PMAA  GG+V QEV+KA +GKF PL Q+FYFDS ESLPS
Sbjct: 327  VPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPS 386

Query: 181  E-PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCG 239
                +  +  P   RYDAQI+VFG   Q+KL+   +F+VG GA+GCE LKN ALMGV  G
Sbjct: 387  LGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTG 446

Query: 240  NQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPE 299
             +G +T+TD D+IEKSNL+RQFLFR  +IG+ KS  AA A   INP +  +A Q R  PE
Sbjct: 447  KKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPE 506

Query: 300  TENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLT 359
            TE +FND F+E L+VV+NALDNV AR Y+D RCL F KPLLESGTLG K NTQ+V+PHLT
Sbjct: 507  TETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLT 566

Query: 360  ENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYAS 419
            E+YG+SRDPPEK+ P CT+ SFP  I+H + WAR +FEGL    P+ VN YL+SP+    
Sbjct: 567  ESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSSAEE 626

Query: 420  AMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENAT 479
             ++      +R+ L+++++ L KE+   F  C+ WARL+FE YF ++  QL   FP +  
Sbjct: 627  VLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIR 686

Query: 480  TSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAV 539
            TS G+PFWS+PKR P PL+F +++  HL F+ AA+ L A  YGIP  +   S   L + +
Sbjct: 687  TSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNIL 746

Query: 540  NKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQ 599
            ++V +P+F+P+ N KI+TDE A    T   DD   I +L + +   +    + ++M P+ 
Sbjct: 747  SEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATK-SDFRMAPLS 805

Query: 600  FEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 659
            FEKDDD N H+D I   +N+RA+NY I   D+ K KFIAG+IIPAIATSTA  +GLVCLE
Sbjct: 806  FEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLE 865

Query: 660  LYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSW-TVWDRWILRDNPTLR 718
            L KV DGG+K E Y+N F NLA+PLF   EP   +  K ++    T+WDRW L  + TL 
Sbjct: 866  LIKVTDGGYKFEVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLL 925

Query: 719  QLLQWLQ-DKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFD 777
            + +  ++   GL    +S G  LL+  + P H ER+  K+  LV+   K +LPPYR H  
Sbjct: 926  EFINAVKEKYGLEPTMVSQGVKLLYVPVMPGHAERLKLKMHKLVKPTTKKKLPPYRVHLT 985

Query: 778  VVVACVDEDDNDIDIPQISIYFS 800
            V  AC D+ D D+  P + IYFS
Sbjct: 986  VSFACDDDGDEDVPGPPVRIYFS 1008

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl\|CDD\|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2	Back alignment and domain information

>gnl\|CDD\|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2	Back alignment and domain information

>gnl\|CDD\|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like	Back alignment and domain information

>gnl\|CDD\|220201 pfam09358, UBA_e1_C, Ubiquitin-activating enzyme e1 C-terminal domain	Back alignment and domain information

>gnl\|CDD\|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2	Back alignment and domain information

>gnl\|CDD\|214955 smart00985, UBA_e1_C, Ubiquitin-activating enzyme e1 C-terminal domain	Back alignment and domain information

>gnl\|CDD\|216180 pfam00899, ThiF, ThiF family	Back alignment and domain information

>gnl\|CDD\|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	Back alignment and domain information

>gnl\|CDD\|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3	Back alignment and domain information

>gnl\|CDD\|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins	Back alignment and domain information

>gnl\|CDD\|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein	Back alignment and domain information

>gnl\|CDD\|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E	Back alignment and domain information

>gnl\|CDD\|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	Back alignment and domain information

>gnl\|CDD\|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB	Back alignment and domain information

>gnl\|CDD\|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated	Back alignment and domain information

>gnl\|CDD\|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>gnl\|CDD\|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site	Back alignment and domain information

>gnl\|CDD\|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional	Back alignment and domain information

>gnl\|CDD\|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1	Back alignment and domain information

>gnl\|CDD\|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E	Back alignment and domain information

>gnl\|CDD\|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated	Back alignment and domain information

>gnl\|CDD\|169382 PRK08328, PRK08328, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated	Back alignment and domain information

>gnl\|CDD\|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	Back alignment and domain information

>gnl\|CDD\|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>gnl\|CDD\|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2	Back alignment and domain information

>gnl\|CDD\|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated	Back alignment and domain information

>gnl\|CDD\|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like	Back alignment and domain information

>gnl\|CDD\|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1	Back alignment and domain information

>gnl\|CDD\|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2	Back alignment and domain information

>gnl\|CDD\|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like	Back alignment and domain information

>gnl\|CDD\|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>gnl\|CDD\|180967 PRK07411, PRK07411, hypothetical protein; Validated	Back alignment and domain information

>gnl\|CDD\|238764 cd01487, E1_ThiF_like, E1_ThiF_like	Back alignment and domain information

>gnl\|CDD\|181302 PRK08223, PRK08223, hypothetical protein; Validated	Back alignment and domain information

>gnl\|CDD\|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1	Back alignment and domain information

>gnl\|CDD\|184854 PRK14852, PRK14852, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|184853 PRK14851, PRK14851, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like	Back alignment and domain information

>gnl\|CDD\|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein	Back alignment and domain information

>gnl\|CDD\|163448 TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein	Back alignment and domain information

>gnl\|CDD\|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional	Back alignment and domain information

>gnl\|CDD\|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1	Back alignment and domain information

>gnl\|CDD\|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively	Back alignment and domain information

>gnl\|CDD\|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3	Back alignment and domain information

>gnl\|CDD\|140272 PTZ00245, PTZ00245, ubiquitin activating enzyme; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		800
KOG2012		1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	100.0
TIGR01408		1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
cd01490		435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	100.0
KOG2013		603	consensus SMT3/SUMO-activating complex, catalytic	100.0
cd01489		312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01484		234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
cd01488		291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
KOG2015		422	consensus NEDD8-activating complex, catalytic comp	100.0
PRK08223		287	hypothetical protein; Validated	100.0
TIGR02356		202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
PRK05690		245	molybdopterin biosynthesis protein MoeB; Provision	100.0
cd00757		228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK07411		390	hypothetical protein; Validated	100.0
PRK08328		231	hypothetical protein; Provisional	100.0
PRK05597		355	molybdopterin biosynthesis protein MoeB; Validated	100.0
cd01492		197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
TIGR02355		240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
cd01493		425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	100.0
cd01491		286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
PRK07878		392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
PRK05600		370	thiamine biosynthesis protein ThiF; Validated	100.0
cd01485		198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
PRK12475		338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK07688		339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
PF09358		125	UBA_e1_C: Ubiquitin-activating enzyme e1 C-termina	99.97
PRK08762		376	molybdopterin biosynthesis protein MoeB; Validated	99.97
COG0476		254	ThiF Dinucleotide-utilizing enzymes involved in mo	99.97
KOG2017		427	consensus Molybdopterin synthase sulfurylase [Coen	99.97
TIGR03736		244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.97
PRK14851		679	hypothetical protein; Provisional	99.97
PRK14852		989	hypothetical protein; Provisional	99.97
PRK15116		268	sulfur acceptor protein CsdL; Provisional	99.96
PRK07877		722	hypothetical protein; Provisional	99.96
cd00755		231	YgdL_like Family of activating enzymes (E1) of ubi	99.96
PRK08644		212	thiamine biosynthesis protein ThiF; Provisional	99.95
PF00899		135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.95
TIGR01408		1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.95
cd01483		143	E1_enzyme_family Superfamily of activating enzymes	99.94
TIGR01381		664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.94
COG1179		263	Dinucleotide-utilizing enzymes involved in molybdo	99.94
TIGR03603		318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.94
cd01486		307	Apg7 Apg7 is an E1-like protein, that activates tw	99.93
cd01487		174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.93
PTZ00245		287	ubiquitin activating enzyme; Provisional	99.92
TIGR02354		200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.92
KOG2014		331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	99.91
KOG2016		523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	99.91
PRK06153		393	hypothetical protein; Provisional	99.9
cd01491		286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	99.89
PF02134		67	UBACT: Repeat in ubiquitin-activating (UBA) protei	99.87
KOG2336		422	consensus Molybdopterin biosynthesis-related prote	99.85
KOG2012		1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.8
KOG2018		430	consensus Predicted dinucleotide-utilizing enzyme	99.8
KOG2014		331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	99.76
KOG2016		523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	99.63
PF10585		45	UBA_e1_thiolCys: Ubiquitin-activating enzyme activ	99.51
TIGR03693		637	ocin_ThiF_like putative thiazole-containing bacter	99.45
KOG2337		669	consensus Ubiquitin activating E1 enzyme-like prot	99.36
cd01493		425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	99.36
PF02134		67	UBACT: Repeat in ubiquitin-activating (UBA) protei	98.31
PF08825		84	E2_bind: E2 binding domain; InterPro: IPR014929 E1	97.81
cd01490		435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	97.63
TIGR03882		193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	97.36
COG1748		389	LYS9 Saccharopine dehydrogenase and related protei	97.28
PRK12549		284	shikimate 5-dehydrogenase; Reviewed	97.15
COG4015		217	Predicted dinucleotide-utilizing enzyme of the Thi	97.09
PF01488		135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.02
PRK06718		202	precorrin-2 dehydrogenase; Reviewed	96.95
TIGR01470		205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.58
PRK06719		157	precorrin-2 dehydrogenase; Validated	96.52
PF13241		103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.48
PRK05562		223	precorrin-2 dehydrogenase; Provisional	96.0
PF03435		386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.83
PRK07819		286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.6
PRK14027		283	quinate/shikimate dehydrogenase; Provisional	95.35
TIGR01809		282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.14
cd01492		197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.1
PRK12548		289	shikimate 5-dehydrogenase; Provisional	95.06
PRK00258		278	aroE shikimate 5-dehydrogenase; Reviewed	94.58
PRK07066		321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.49
COG0373		414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.49
PF14732		87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	94.46
PF05237		84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	94.41
PRK12749		288	quinate/shikimate dehydrogenase; Reviewed	94.36
PRK13940		414	glutamyl-tRNA reductase; Provisional	94.25
cd01485		198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.18
PRK14106		450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.1
COG0569		225	TrkA K+ transport systems, NAD-binding component [	94.08
PF00070		80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.06
PF02737		180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.05
COG0169		283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.03
COG1648		210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	94.01
PRK05808		282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.96
cd01065		155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.91
PF02826		178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.89
cd01489		312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	93.75
PF01113		124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	93.73
KOG4169		261	consensus 15-hydroxyprostaglandin dehydrogenase an	93.63
PF01118		121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	93.44
PF10585		45	UBA_e1_thiolCys: Ubiquitin-activating enzyme activ	93.37
PF00056		141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.33
PRK04148		134	hypothetical protein; Provisional	93.32
cd05291		306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.23
PRK10637		457	cysG siroheme synthase; Provisional	93.2
PRK06130		311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.09
COG0111		324	SerA Phosphoglycerate dehydrogenase and related de	92.89
cd01080		168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	92.88
PRK08293		287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.85
PRK00066		315	ldh L-lactate dehydrogenase; Reviewed	92.75
cd05311		226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.71
cd05290		307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.55
PRK09260		288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.37
COG0300		265	DltE Short-chain dehydrogenases of various substra	92.37
PF03446		163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.27
cd05293		312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	92.19
PTZ00082		321	L-lactate dehydrogenase; Provisional	92.12
PRK13403		335	ketol-acid reductoisomerase; Provisional	91.96
PRK15469		312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	91.57
PLN02602		350	lactate dehydrogenase	91.46
cd05213		311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	91.35
cd00300		300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	91.11
cd01078		194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.98
COG1086		588	Predicted nucleoside-diphosphate sugar epimerases	90.98
PRK05854		313	short chain dehydrogenase; Provisional	90.74
PLN00203		519	glutamyl-tRNA reductase	90.63
PRK13243		333	glyoxylate reductase; Reviewed	90.61
PRK14192		283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.59
PRK06197		306	short chain dehydrogenase; Provisional	90.4
PRK07063		260	short chain dehydrogenase; Provisional	90.25
PRK15438		378	erythronate-4-phosphate dehydrogenase PdxB; Provis	90.21
PRK08410		311	2-hydroxyacid dehydrogenase; Provisional	90.02
PRK09242		257	tropinone reductase; Provisional	89.9
PRK05476		425	S-adenosyl-L-homocysteine hydrolase; Provisional	89.89
PLN02819		1042	lysine-ketoglutarate reductase/saccharopine dehydr	89.87
PRK07574		385	formate dehydrogenase; Provisional	89.82
PF02558		151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	89.69
PRK06487		317	glycerate dehydrogenase; Provisional	89.61
TIGR00507		270	aroE shikimate 5-dehydrogenase. This model finds p	89.54
PRK11880		267	pyrroline-5-carboxylate reductase; Reviewed	89.32
PRK07062		265	short chain dehydrogenase; Provisional	89.29
PRK06932		314	glycerate dehydrogenase; Provisional	89.29
PF03807		96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	89.26
PRK07531		495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	88.91
TIGR00872		298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	88.84
PRK09599		301	6-phosphogluconate dehydrogenase-like protein; Rev	88.72
cd05191		86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	88.7
PRK14619		308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.49
COG1250		307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	88.4
PLN03139		386	formate dehydrogenase; Provisional	88.38
PRK00257		381	erythronate-4-phosphate dehydrogenase; Validated	88.3
PRK00048		257	dihydrodipicolinate reductase; Provisional	88.25
PLN02780		320	ketoreductase/ oxidoreductase	87.98
PRK11730		715	fadB multifunctional fatty acid oxidation complex	87.96
PRK06436		303	glycerate dehydrogenase; Provisional	87.95
PTZ00325		321	malate dehydrogenase; Provisional	87.92
COG0136		334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	87.92
PRK11154		708	fadJ multifunctional fatty acid oxidation complex	87.86
PRK07831		262	short chain dehydrogenase; Provisional	87.79
cd01075		200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	87.63
TIGR00465		314	ilvC ketol-acid reductoisomerase. This is the seco	87.57
PRK08251		248	short chain dehydrogenase; Provisional	87.34
cd00401		413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	87.29
PRK09496		453	trkA potassium transporter peripheral membrane com	87.22
PRK08618		325	ornithine cyclodeaminase; Validated	87.18
cd01488		291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	87.15
PLN03209		576	translocon at the inner envelope of chloroplast su	87.15
PRK05708		305	2-dehydropantoate 2-reductase; Provisional	86.95
PF02056		183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	86.85
PRK09496		453	trkA potassium transporter peripheral membrane com	86.79
PRK11908		347	NAD-dependent epimerase/dehydratase family protein	86.78
COG1893		307	ApbA Ketopantoate reductase [Coenzyme metabolism]	86.41
PRK03562		621	glutathione-regulated potassium-efflux system prot	86.37
PRK07634		245	pyrroline-5-carboxylate reductase; Reviewed	86.3
PRK05690		245	molybdopterin biosynthesis protein MoeB; Provision	86.19
PF02254		116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	86.16
PF13460		183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	86.15
PRK06141		314	ornithine cyclodeaminase; Validated	85.97
cd05298		437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	85.92
cd05296		419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	85.81
PRK09186		256	flagellin modification protein A; Provisional	85.77
TIGR02992		326	ectoine_eutC ectoine utilization protein EutC. Mem	85.76
PRK08328		231	hypothetical protein; Provisional	85.72
TIGR01832		248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	85.72
PTZ00117		319	malate dehydrogenase; Provisional	85.69
PRK14175		286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.65
PRK07576		264	short chain dehydrogenase; Provisional	85.45
PRK12826		251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	85.44
TIGR02441		737	fa_ox_alpha_mit fatty acid oxidation complex, alph	85.38
PF10727		127	Rossmann-like: Rossmann-like domain; InterPro: IPR	85.38
PRK06476		258	pyrroline-5-carboxylate reductase; Reviewed	85.36
TIGR02440		699	FadJ fatty oxidation complex, alpha subunit FadJ.	85.3
PTZ00431		260	pyrroline carboxylate reductase; Provisional	85.29
PRK11790		409	D-3-phosphoglycerate dehydrogenase; Provisional	85.24
PF02719		293	Polysacc_synt_2: Polysaccharide biosynthesis prote	85.19
TIGR02355		240	moeB molybdopterin synthase sulfurylase MoeB. This	85.12
PRK05335		436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	85.05
TIGR01035		417	hemA glutamyl-tRNA reductase. This enzyme, togethe	85.04
PRK15409		323	bifunctional glyoxylate/hydroxypyruvate reductase	85.03
KOG0069		336	consensus Glyoxylate/hydroxypyruvate reductase (D-	84.94
PLN02206		442	UDP-glucuronate decarboxylase	84.89
TIGR02437		714	FadB fatty oxidation complex, alpha subunit FadB.	84.49
PRK05867		253	short chain dehydrogenase; Provisional	84.37
PRK08217		253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.07
PRK14982		340	acyl-ACP reductase; Provisional	84.01
PRK07340		304	ornithine cyclodeaminase; Validated	83.93
PRK07478		254	short chain dehydrogenase; Provisional	83.91
PF00106		167	adh_short: short chain dehydrogenase alcohol dehyd	83.91
PRK06522		304	2-dehydropantoate 2-reductase; Reviewed	83.86
COG1063		350	Tdh Threonine dehydrogenase and related Zn-depende	83.6
PLN02253		280	xanthoxin dehydrogenase	83.55
KOG1205		282	consensus Predicted dehydrogenase [Secondary metab	83.54
PRK12480		330	D-lactate dehydrogenase; Provisional	83.46
PRK05875		276	short chain dehydrogenase; Provisional	83.37
PLN02306		386	hydroxypyruvate reductase	83.37
PRK06249		313	2-dehydropantoate 2-reductase; Provisional	83.36
PLN02688		266	pyrroline-5-carboxylate reductase	83.34
PRK08291		330	ectoine utilization protein EutC; Validated	83.3
PRK08655		437	prephenate dehydrogenase; Provisional	83.26
PRK10537		393	voltage-gated potassium channel; Provisional	83.06
PRK12384		259	sorbitol-6-phosphate dehydrogenase; Provisional	83.04
PLN02350		493	phosphogluconate dehydrogenase (decarboxylating)	83.03
PRK06138		252	short chain dehydrogenase; Provisional	82.95
PLN02240		352	UDP-glucose 4-epimerase	82.86
PLN02166		436	dTDP-glucose 4,6-dehydratase	82.78
PRK12939		250	short chain dehydrogenase; Provisional	82.7
PRK06523		260	short chain dehydrogenase; Provisional	82.5
PRK12490		299	6-phosphogluconate dehydrogenase-like protein; Rev	82.44
TIGR01915		219	npdG NADPH-dependent F420 reductase. This model re	82.3
cd05211		217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	82.23
TIGR02853		287	spore_dpaA dipicolinic acid synthetase, A subunit.	82.22
cd00757		228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	82.15
cd00762		254	NAD_bind_malic_enz NAD(P) binding domain of malic	82.13
PRK05866		293	short chain dehydrogenase; Provisional	82.11
PRK00676		338	hemA glutamyl-tRNA reductase; Validated	82.08
PRK00045		423	hemA glutamyl-tRNA reductase; Reviewed	82.06
TIGR00873		467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	82.04
PRK12550		272	shikimate 5-dehydrogenase; Reviewed	82.03
PTZ00142		470	6-phosphogluconate dehydrogenase; Provisional	81.98
PRK06125		259	short chain dehydrogenase; Provisional	81.83
PRK06728		347	aspartate-semialdehyde dehydrogenase; Provisional	81.75
PRK06139		330	short chain dehydrogenase; Provisional	81.62
PRK07530		292	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.6
PLN02427		386	UDP-apiose/xylose synthase	81.55
TIGR00137		433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	81.41
PRK08339		263	short chain dehydrogenase; Provisional	81.37
KOG2015		422	consensus NEDD8-activating complex, catalytic comp	81.33
PLN02968		381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	81.21
PLN02545		295	3-hydroxybutyryl-CoA dehydrogenase	81.18
KOG0024		354	consensus Sorbitol dehydrogenase [Secondary metabo	81.16
PRK13304		265	L-aspartate dehydrogenase; Reviewed	81.12
PRK06035		291	3-hydroxyacyl-CoA dehydrogenase; Validated	81.07
TIGR02632		676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	81.04
PRK12367		245	short chain dehydrogenase; Provisional	80.97
PLN00106		323	malate dehydrogenase	80.87
PRK07792		306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.74
cd05292		308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	80.72
PLN02928		347	oxidoreductase family protein	80.67
TIGR03589		324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	80.65
COG2085		211	Predicted dinucleotide-binding enzymes [General fu	80.57
PRK07814		263	short chain dehydrogenase; Provisional	80.31
COG0039		313	Mdh Malate/lactate dehydrogenases [Energy producti	80.3
cd01338		322	MDH_choloroplast_like Chloroplast-like malate dehy	80.27
TIGR03466		328	HpnA hopanoid-associated sugar epimerase. The sequ	80.22
PRK07067		257	sorbitol dehydrogenase; Provisional	80.19
TIGR01327		525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	80.1
PRK13302		271	putative L-aspartate dehydrogenase; Provisional	80.08
TIGR03206		250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	80.07

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=2.5e-212  Score=1765.75  Aligned_cols=789  Identities=57%  Similarity=1.004  Sum_probs=765.9

Q ss_pred             CCCCCCCCcEeEEEcCCceEEEecCCCCcCCcccCcEEEEEeeeeEeecccHHHHhcCCCccccccCccCCCchhHHHHH
Q 003727            1 MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAF   80 (800)
Q Consensus         1 m~~ln~~~~~~i~v~~~~~f~i~~dt~~~~~y~~gg~~~qvK~p~~~~f~sL~e~l~~p~~~~~~d~~k~~~~~~l~~~~   80 (800)
                      |+|||||+|+||+|++||+|+| |||+.|++|..||+++|||+|++++||||.++|..| +++..||+|+.|++++|.+|
T Consensus       221 m~eLN~~~P~kI~v~~p~sf~I-gdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af  298 (1013)
T KOG2012|consen  221 MTELNDCKPRKITVLGPYSFSI-GDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAF  298 (1013)
T ss_pred             ccccCCCCceEEEEecCceEEe-ccccchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHH
Confidence            8999999999999999999999 999999999999999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhhcccccchhHHHhhhhHHHHHHHhhc
Q 003727           81 QALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACS  160 (800)
Q Consensus        81 ~aL~~f~~~~gr~P~~~~~~Da~~l~~i~~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~Pv~AiiGGivaQEVIKait  160 (800)
                      +||++|++.|||+|.|++++|+++|++++.++.+..+  ...++++++|+.|+.+++|.+.||+|++||+|||||+|++|
T Consensus       299 ~AL~~F~~~~Gr~P~p~~e~DA~~l~~l~~~i~~~~~--~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~s  376 (1013)
T KOG2012|consen  299 QALHQFQEAHGRLPRPGNEEDAEELVELARDISEGLG--LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACS  376 (1013)
T ss_pred             HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhhhhcc--ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhc
Confidence            9999999999999999999999999999999988763  34589999999999999999999999999999999999999


Q ss_pred             CccccccccccccccccCCCC--CCCccCCCCccCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccC
Q 003727          161 GKFHPLLQFFYFDSVESLPSE--PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSC  238 (800)
Q Consensus       161 ~k~~Pi~q~~~~d~~~~l~~~--~l~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~  238 (800)
                      |||+||.||||||++|+||++  +++++++.|.++|||.||++||...|++|.+.++++||||+||||++||+|||||+|
T Consensus       377 gKF~PL~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~  456 (1013)
T KOG2012|consen  377 GKFTPLKQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGC  456 (1013)
T ss_pred             cCccchhHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeecc
Confidence            999999999999999999975  788999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEc
Q 003727          239 GNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNA  318 (800)
Q Consensus       239 ~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a  318 (800)
                      |..|+|+++|||.||.||||||||||.+|||++|+++||+++..|||+++|+++..+++++||.+|+++||++.|+|++|
T Consensus       457 g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanA  536 (1013)
T KOG2012|consen  457 GNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANA  536 (1013)
T ss_pred             CCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCCCCccccCCCCCcchhHHHHHhhhhh
Q 003727          319 LDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG  398 (800)
Q Consensus       319 ~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~iip~~t~~y~~~~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~  398 (800)
                      +||+.||+|++++|+.+.+||+++||+|++|++|+++|++||+|++++|||+|++|+||+++||+.|+|||+|||+.||+
T Consensus       537 LDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg  616 (1013)
T KOG2012|consen  537 LDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEG  616 (1013)
T ss_pred             hcchhhhhhhhhhhhhhccchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccChhhHhhhcCChHHHHHHhhhcCchhHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 003727          399 LLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENA  478 (800)
Q Consensus       399 ~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~  478 (800)
                      +|.+.++.+|.||++|..+...++..++.+..+.|+++.+.|. .+|.+|+||++|||..|+++|+++|+|||++||+|.
T Consensus       617 ~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~  695 (1013)
T KOG2012|consen  617 LFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDA  695 (1013)
T ss_pred             HhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCccc
Confidence            9999999999999999988888898999999999999999997 999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHHhhhcCCCCCCCCCCcccccc
Q 003727          479 TTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETD  558 (800)
Q Consensus       479 ~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  558 (800)
                      +|++|.|||+||||||+|++||.+|++|+.||++||+|||++|||+..   .+..+++..+..+++|+|+|+++.+|.++
T Consensus       696 ~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~  772 (1013)
T KOG2012|consen  696 KTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVE  772 (1013)
T ss_pred             ccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeeccc
Confidence            999999999999999999999999999999999999999999999984   56779999999999999999999999999


Q ss_pred             ccccccCCCCCCcHHHHHHHHHHHHHhhhcCCCCCCCCCccccccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHh
Q 003727          559 EKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIA  638 (800)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFV~AasNLRA~ny~I~~~~~~~~K~iA  638 (800)
                      +.+......+.++...+++|...++.+...  .++++.|+.||||||+|+|||||+|||||||.||+||++||+++|+||
T Consensus       773 ~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~--~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~Ia  850 (1013)
T KOG2012|consen  773 EAELAASSASVDDSAAIDQLNKALPSPSVL--PSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIA  850 (1013)
T ss_pred             ccccccccccCCchHHHHHHhhcccccccC--CCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheee
Confidence            988887777788888999999998887764  447899999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHhhCCCCcccccccccccccccccccCCCCCccccc-CCCcceEEEEEEeCCCCcH
Q 003727          639 GRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKH-QDMSWTVWDRWILRDNPTL  717 (800)
Q Consensus       639 G~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~-~~~~~t~wdr~~v~~~~TL  717 (800)
                      |+||||||||||+|+||+|+|+||++.|+.+++.|||+|+|||+|+|+++||.++++..+ .+.+||+||||++.+++||
T Consensus       851 GkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL  930 (1013)
T KOG2012|consen  851 GKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTL  930 (1013)
T ss_pred             eeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCH
Confidence            999999999999999999999999999988999999999999999999999999888766 5559999999999999999


Q ss_pred             HHHHHHHHHc-CCceeeeecCCceeeccCCcchhhcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeEE
Q 003727          718 RQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQIS  796 (800)
Q Consensus       718 ~~li~~~~~~-~l~~~~i~~g~~~lY~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~l~l~~~~~d~~~~dv~~P~v~  796 (800)
                      ++|+++++++ |++++||++|+++||+++||++++||+++++||++.++|+++|++++.|+|+++|+|+||+|+++|+||
T Consensus       931 ~~~L~~~~~~~gl~i~mls~G~~lly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v~ 1010 (1013)
T KOG2012|consen  931 REFLDHLEEQHGLEITMLSQGVSLLYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPVR 1010 (1013)
T ss_pred             HHHHHHHhhhcCceEEEEeccceeehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCceE
Confidence            9999999989 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEe
Q 003727          797 IYF  799 (800)
Q Consensus       797 ~~~  799 (800)
                      |+|
T Consensus      1011 y~f 1013 (1013)
T KOG2012|consen 1011 YYF 1013 (1013)
T ss_pred             EeC
Confidence            986

>TIGR01408 Ube1 ubiquitin-activating enzyme E1	Back alignment and domain information

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2	Back alignment and domain information

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2	Back alignment and domain information

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like	Back alignment and domain information

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3	Back alignment and domain information

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK08223 hypothetical protein; Validated	Back alignment and domain information

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E	Back alignment and domain information

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional	Back alignment and domain information

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA	Back alignment and domain information

>PRK07411 hypothetical protein; Validated	Back alignment and domain information

>PRK08328 hypothetical protein; Provisional	Back alignment and domain information

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated	Back alignment and domain information

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1	Back alignment and domain information

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB	Back alignment and domain information

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1	Back alignment and domain information

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated	Back alignment and domain information

>PRK05600 thiamine biosynthesis protein ThiF; Validated	Back alignment and domain information

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like	Back alignment and domain information

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional	Back alignment and domain information

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	Back alignment and domain information

>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised	Back alignment and domain information

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated	Back alignment and domain information

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]	Back alignment and domain information

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]	Back alignment and domain information

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein	Back alignment and domain information

>PRK14851 hypothetical protein; Provisional	Back alignment and domain information

>PRK14852 hypothetical protein; Provisional	Back alignment and domain information

>PRK15116 sulfur acceptor protein CsdL; Provisional	Back alignment and domain information

>PRK07877 hypothetical protein; Provisional	Back alignment and domain information

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E	Back alignment and domain information

>PRK08644 thiamine biosynthesis protein ThiF; Provisional	Back alignment and domain information

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP	Back alignment and domain information

>TIGR01408 Ube1 ubiquitin-activating enzyme E1	Back alignment and domain information

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins	Back alignment and domain information

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p	Back alignment and domain information

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	Back alignment and domain information

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family	Back alignment and domain information

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively	Back alignment and domain information

>cd01487 E1_ThiF_like E1_ThiF_like	Back alignment and domain information

>PTZ00245 ubiquitin activating enzyme; Provisional	Back alignment and domain information

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2	Back alignment and domain information

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK06153 hypothetical protein; Provisional	Back alignment and domain information

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]	Back alignment and domain information

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]	Back alignment and domain information

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP	Back alignment and domain information

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein	Back alignment and domain information

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]	Back alignment and domain information

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1	Back alignment and domain information

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]	Back alignment and domain information

>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades	Back alignment and domain information

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2	Back alignment and domain information

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain	Back alignment and domain information

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	Back alignment and domain information

>PRK12549 shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]	Back alignment and domain information

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases	Back alignment and domain information

>PRK06718 precorrin-2 dehydrogenase; Reviewed	Back alignment and domain information

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain	Back alignment and domain information

>PRK06719 precorrin-2 dehydrogenase; Validated	Back alignment and domain information

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B	Back alignment and domain information

>PRK05562 precorrin-2 dehydrogenase; Provisional	Back alignment and domain information

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase	Back alignment and domain information

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK14027 quinate/shikimate dehydrogenase; Provisional	Back alignment and domain information

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type	Back alignment and domain information

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1	Back alignment and domain information

>PRK12548 shikimate 5-dehydrogenase; Provisional	Back alignment and domain information

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	Back alignment and domain information

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B	Back alignment and domain information

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein	Back alignment and domain information

>PRK12749 quinate/shikimate dehydrogenase; Reviewed	Back alignment and domain information

>PRK13940 glutamyl-tRNA reductase; Provisional	Back alignment and domain information

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like	Back alignment and domain information

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	Back alignment and domain information

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Back alignment and domain information

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1	Back alignment and domain information

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]	Back alignment and domain information

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase	Back alignment and domain information

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related	Back alignment and domain information

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2	Back alignment and domain information

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]	Back alignment and domain information

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]	Back alignment and domain information

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate	Back alignment and domain information

>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP	Back alignment and domain information

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []	Back alignment and domain information

>PRK04148 hypothetical protein; Provisional	Back alignment and domain information

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	Back alignment and domain information

>PRK10637 cysG siroheme synthase; Provisional	Back alignment and domain information

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]	Back alignment and domain information

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase	Back alignment and domain information

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK00066 ldh L-lactate dehydrogenase; Reviewed	Back alignment and domain information

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2	Back alignment and domain information

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases	Back alignment and domain information

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]	Back alignment and domain information

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1	Back alignment and domain information

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases	Back alignment and domain information

>PTZ00082 L-lactate dehydrogenase; Provisional	Back alignment and domain information

>PRK13403 ketol-acid reductoisomerase; Provisional	Back alignment and domain information

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional	Back alignment and domain information

>PLN02602 lactate dehydrogenase	Back alignment and domain information

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase	Back alignment and domain information

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes	Back alignment and domain information

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase	Back alignment and domain information

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK05854 short chain dehydrogenase; Provisional	Back alignment and domain information

>PLN00203 glutamyl-tRNA reductase	Back alignment and domain information

>PRK13243 glyoxylate reductase; Reviewed	Back alignment and domain information

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK06197 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK07063 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional	Back alignment and domain information

>PRK08410 2-hydroxyacid dehydrogenase; Provisional	Back alignment and domain information

>PRK09242 tropinone reductase; Provisional	Back alignment and domain information

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional	Back alignment and domain information

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase	Back alignment and domain information

>PRK07574 formate dehydrogenase; Provisional	Back alignment and domain information

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1	Back alignment and domain information

>PRK06487 glycerate dehydrogenase; Provisional	Back alignment and domain information

>TIGR00507 aroE shikimate 5-dehydrogenase	Back alignment and domain information

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PRK07062 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK06932 glycerate dehydrogenase; Provisional	Back alignment and domain information

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain	Back alignment and domain information

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated	Back alignment and domain information

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)	Back alignment and domain information

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed	Back alignment and domain information

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins	Back alignment and domain information

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional	Back alignment and domain information

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	Back alignment and domain information

>PLN03139 formate dehydrogenase; Provisional	Back alignment and domain information

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated	Back alignment and domain information

>PRK00048 dihydrodipicolinate reductase; Provisional	Back alignment and domain information

>PLN02780 ketoreductase/ oxidoreductase	Back alignment and domain information

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>PRK06436 glycerate dehydrogenase; Provisional	Back alignment and domain information

>PTZ00325 malate dehydrogenase; Provisional	Back alignment and domain information

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>PRK07831 short chain dehydrogenase; Provisional	Back alignment and domain information

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase	Back alignment and domain information

>TIGR00465 ilvC ketol-acid reductoisomerase	Back alignment and domain information

>PRK08251 short chain dehydrogenase; Provisional	Back alignment and domain information

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)	Back alignment and domain information

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed	Back alignment and domain information

>PRK08618 ornithine cyclodeaminase; Validated	Back alignment and domain information

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3	Back alignment and domain information

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional	Back alignment and domain information

>PRK05708 2-dehydropantoate 2-reductase; Provisional	Back alignment and domain information

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3	Back alignment and domain information

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed	Back alignment and domain information

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional	Back alignment and domain information

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional	Back alignment and domain information

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus	Back alignment and domain information

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B	Back alignment and domain information

>PRK06141 ornithine cyclodeaminase; Validated	Back alignment and domain information

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	Back alignment and domain information

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	Back alignment and domain information

>PRK09186 flagellin modification protein A; Provisional	Back alignment and domain information

>TIGR02992 ectoine_eutC ectoine utilization protein EutC	Back alignment and domain information

>PRK08328 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase	Back alignment and domain information

>PTZ00117 malate dehydrogenase; Provisional	Back alignment and domain information

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK07576 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed	Back alignment and domain information

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial	Back alignment and domain information

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins	Back alignment and domain information

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ	Back alignment and domain information

>PTZ00431 pyrroline carboxylate reductase; Provisional	Back alignment and domain information

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional	Back alignment and domain information

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases	Back alignment and domain information

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB	Back alignment and domain information

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed	Back alignment and domain information

>TIGR01035 hemA glutamyl-tRNA reductase	Back alignment and domain information

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional	Back alignment and domain information

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]	Back alignment and domain information

>PLN02206 UDP-glucuronate decarboxylase	Back alignment and domain information

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB	Back alignment and domain information

>PRK05867 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	Back alignment and domain information

>PRK14982 acyl-ACP reductase; Provisional	Back alignment and domain information

>PRK07340 ornithine cyclodeaminase; Validated	Back alignment and domain information

>PRK07478 short chain dehydrogenase; Provisional	Back alignment and domain information

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases	Back alignment and domain information

>PRK06522 2-dehydropantoate 2-reductase; Reviewed	Back alignment and domain information

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>PLN02253 xanthoxin dehydrogenase	Back alignment and domain information

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PRK12480 D-lactate dehydrogenase; Provisional	Back alignment and domain information

>PRK05875 short chain dehydrogenase; Provisional	Back alignment and domain information

>PLN02306 hydroxypyruvate reductase	Back alignment and domain information

>PRK06249 2-dehydropantoate 2-reductase; Provisional	Back alignment and domain information

>PLN02688 pyrroline-5-carboxylate reductase	Back alignment and domain information

>PRK08291 ectoine utilization protein EutC; Validated	Back alignment and domain information

>PRK08655 prephenate dehydrogenase; Provisional	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional	Back alignment and domain information

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)	Back alignment and domain information

>PRK06138 short chain dehydrogenase; Provisional	Back alignment and domain information

>PLN02240 UDP-glucose 4-epimerase	Back alignment and domain information

>PLN02166 dTDP-glucose 4,6-dehydratase	Back alignment and domain information

>PRK12939 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK06523 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed	Back alignment and domain information

>TIGR01915 npdG NADPH-dependent F420 reductase	Back alignment and domain information

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase	Back alignment and domain information

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit	Back alignment and domain information

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA	Back alignment and domain information

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme	Back alignment and domain information

>PRK05866 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK00676 hemA glutamyl-tRNA reductase; Validated	Back alignment and domain information

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed	Back alignment and domain information

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating	Back alignment and domain information

>PRK12550 shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional	Back alignment and domain information

>PRK06125 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional	Back alignment and domain information

>PRK06139 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PLN02427 UDP-apiose/xylose synthase	Back alignment and domain information

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase	Back alignment and domain information

>PRK08339 short chain dehydrogenase; Provisional	Back alignment and domain information

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase	Back alignment and domain information

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase	Back alignment and domain information

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PRK13304 L-aspartate dehydrogenase; Reviewed	Back alignment and domain information

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated	Back alignment and domain information

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase	Back alignment and domain information

>PRK12367 short chain dehydrogenase; Provisional	Back alignment and domain information

>PLN00106 malate dehydrogenase	Back alignment and domain information

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	Back alignment and domain information

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases	Back alignment and domain information

>PLN02928 oxidoreductase family protein	Back alignment and domain information

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase	Back alignment and domain information

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]	Back alignment and domain information

>PRK07814 short chain dehydrogenase; Provisional	Back alignment and domain information

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]	Back alignment and domain information

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases	Back alignment and domain information

>TIGR03466 HpnA hopanoid-associated sugar epimerase	Back alignment and domain information

>PRK07067 sorbitol dehydrogenase; Provisional	Back alignment and domain information

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase	Back alignment and domain information

>PRK13302 putative L-aspartate dehydrogenase; Provisional	Back alignment and domain information

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase	Back alignment and domain information

Homologous Structure Templates