Citrus Sinensis ID: 003729

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800

MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR

cccccccccEEEEEccccEEEEccccccccccccccEEEEEcccEEEEcccHHHHHcccccEEEccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccccccccccccccccHHHHHccHHHHHHHHcccEEEEccccccHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEccccccccccccHHHHccccEEEEccccHHHHHHHHHHHHcccccEEEccccccccEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHcccccccEEccccEEEccccccHHHcccccHHHHHHHHcccccccccEEEEEEEEEEccccccccccEEEEEEc

cccccccccEEEEEcccEEEEEccccccccccccccEEEEEcccEEEEcccHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHEHHHHHHHHcccccccHHHccccccccccEEEEEcHHHHHHHHHccEEEEcccHHHHHHHHHHHHHccccccccEEEEEccccEEEccccccEEccHHHccccHHHHHHHHHHHHcccccEEEEcccccccHHHHccHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEEcccccccEEEEEEcccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccEEEEEccccccccccccccHHHHHHHHHHcccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccEcccEEEEEEEEEEcccccHHHHHHHHHHccccEEEEccHHHHHHHHHcHHHHHHHcccHHHHHHHHHccccccccEEEEEEEEEcccccccccccEEEEEEc

mtelndgkprkiksarpysftleedttnygtyvkggivtqvkqpkvlnfkplrealedpgdfllsdfskfdrppplhlAFQALDKFVSElgrfpvagseEDAQKLISVATNINeslgdgrvedINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKacsgkfhplyqffyfdsveslptepldstefkpinsryDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMgvscgnqgkltitdddvieksnlsrqflfrdwnigqaksTVAAsaatsinprlNIEALqnrvgpetenvfddTFWENITCVINALDNVNARLYVDQRCLYfqkpllesgtlgakcntqmviphltenygasrdppekqapmctvhsfphnidhCLTWARSEFEGLLEKTPAEVNAYLsnpveyttsmanagdaqaRDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFtfpedaatstgapfwsapkrfphplqfssadpshLHFVMAASILRaetfgipipdwtnnpKMLAEAVDKvmvpdflpkkdakiltdekattlstasvddAAVINDLIIKLEQCrknlpsgfrlkpiqfekdddtnYHMDMIAGLANMRarnysipevdKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVldgghkleDYRNTFANlalplfsmaepvppkvikhrdmswtvwdrwilkdnpTLRELIQWLKDkglnaysiscgscllfnsmfprhkermdKKVVDLAREVAkvelppyrrhlDVVVaceddedndidiplisiyfr

mtelndgkprkiksarpysftleedttnygtyVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATnineslgdgRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAAsaatsinprlNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKkdakiltdekattlstasvddaaVINDLIIKLEQcrknlpsgfrlkpiqfekdddtNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREvakvelppyrrhldvvvaceddedndidiplisiyfr

MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQakstvaasaatsINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR

*******************FTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSEL********************NINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLP*******EFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENY************MCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMA******ARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQF**ADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYF*

MTEL**GKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLG**RVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTEPL****FKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKV****************************DAAVINDLIIKLEQC*******FRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR

***LNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEK**********DAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		800	2.2.26 [Sep-21-2011]
P93028		1080	Ubiquitin-activating enzy	yes	no	0.993	0.736	0.865	0.0
P92974		1077	Ubiquitin-activating enzy	no	no	0.992	0.737	0.834	0.0
P31251		1051	Ubiquitin-activating enzy	N/A	no	1.0	0.761	0.786	0.0
P20973		1051	Ubiquitin-activating enzy	N/A	no	1.0	0.761	0.786	0.0
P31252		1053	Ubiquitin-activating enzy	N/A	no	0.993	0.754	0.755	0.0
Q29504		1058	Ubiquitin-like modifier-a	yes	no	0.98	0.741	0.444	0.0
P22314		1058	Ubiquitin-like modifier-a	yes	no	0.98	0.741	0.442	0.0
A3KMV5		1058	Ubiquitin-like modifier-a	yes	no	0.98	0.741	0.440	0.0
P22515		1024	Ubiquitin-activating enzy	yes	no	0.987	0.771	0.446	0.0
P31254		1058	Ubiquitin-like modifier-a	yes	no	0.982	0.742	0.435	0.0

>sp\|P93028\|UBE11_ARATH Ubiquitin-activating enzyme E1 1 OS=Arabidopsis thaliana GN=UBA1 PE=1 SV=1	Back alignment and function desciption

 Score = 1462 bits (3786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/800 (86%), Positives = 753/800 (94%)

Query: 1    MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPG 60
            MTELNDGKPRKIKS RPYSFTL+EDTTNYGTYVKGGIVTQVKQPK+LNFKPLREAL+DPG
Sbjct: 281  MTELNDGKPRKIKSTRPYSFTLDEDTTNYGTYVKGGIVTQVKQPKLLNFKPLREALKDPG 340

Query: 61   DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGR 120
            DFL SDFSKFDRPP LHLAFQALD F +E GRFPVAGSEEDAQKLIS+AT IN   GD +
Sbjct: 341  DFLFSDFSKFDRPPLLHLAFQALDHFKAEAGRFPVAGSEEDAQKLISIATAINTGQGDLK 400

Query: 121  VEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPT 180
            VE+++ KLLRHF+FGA+AVLNPMAAMFGGIVGQEVVKACSGKFHPL+QFFYFDSVESLP+
Sbjct: 401  VENVDQKLLRHFSFGAKAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPS 460

Query: 181  EPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGN 240
            EP+DS++F P NSRYDAQISVFGAK QKKLEDAKVF VGSGALGCEFLKN+ALMGVSCG+
Sbjct: 461  EPVDSSDFAPRNSRYDAQISVFGAKFQKKLEDAKVFTVGSGALGCEFLKNLALMGVSCGS 520

Query: 241  QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPET 300
            QGKLT+TDDD+IEKSNLSRQFLFRDWNIGQAKSTVAASAA  INPR NIEALQNRVG ET
Sbjct: 521  QGKLTVTDDDIIEKSNLSRQFLFRDWNIGQAKSTVAASAAAVINPRFNIEALQNRVGAET 580

Query: 301  ENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE 360
            ENVFDD FWEN+T V+NALDNVNARLYVD RCLYFQKPLLESGTLG KCNTQ VIPHLTE
Sbjct: 581  ENVFDDAFWENLTVVVNALDNVNARLYVDSRCLYFQKPLLESGTLGTKCNTQSVIPHLTE 640

Query: 361  NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTS 420
            NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLS+PVEYT S
Sbjct: 641  NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSSPVEYTNS 700

Query: 421  MANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAAT 480
            M +AGDAQARD LER++ECL+KEKCE FQDC+TWARL+FEDYF NRVKQLI+TFPEDAAT
Sbjct: 701  MMSAGDAQARDTLERIVECLEKEKCETFQDCLTWARLRFEDYFVNRVKQLIYTFPEDAAT 760

Query: 481  STGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVD 540
            STGAPFWSAPKRFP PLQ+SS+DPS L+F+ A +ILRAETFGIPIP+WT NPK  AEAVD
Sbjct: 761  STGAPFWSAPKRFPRPLQYSSSDPSLLNFITATAILRAETFGIPIPEWTKNPKEAAEAVD 820

Query: 541  KVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQF 600
            +V+VPDF P++DAKI+TDEKATTL+TASVDDAAVI+DLI K++QCR NL   FR+KPIQF
Sbjct: 821  RVIVPDFEPRQDAKIVTDEKATTLTTASVDDAAVIDDLIAKIDQCRHNLSPDFRMKPIQF 880

Query: 601  EKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 660
            EKDDDTNYHMD+IAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL
Sbjct: 881  EKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 940

Query: 661  YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLREL 720
            YKVLDGGHK+E YRNTFANLALPLFSMAEP+PPKV+KHRDM+WTVWDRW+LK NPTLRE+
Sbjct: 941  YKVLDGGHKVEAYRNTFANLALPLFSMAEPLPPKVVKHRDMAWTVWDRWVLKGNPTLREV 1000

Query: 721  IQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVV 780
            +QWL+DKGL+AYSISCGSCLLFNSMF RHKERMDKKVVDLAR+VAKVELPPYR HLDVVV
Sbjct: 1001 LQWLEDKGLSAYSISCGSCLLFNSMFTRHKERMDKKVVDLARDVAKVELPPYRNHLDVVV 1060

Query: 781  ACEDDEDNDIDIPLISIYFR 800
            ACED++DND+DIPL+SIYFR
Sbjct: 1061 ACEDEDDNDVDIPLVSIYFR 1080

Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMP.
Arabidopsis thaliana (taxid: 3702)

>sp\|P92974\|UBE12_ARATH Ubiquitin-activating enzyme E1 2 OS=Arabidopsis thaliana GN=UBA2 PE=2 SV=1	Back alignment and function description

>sp\|P31251\|UBE12_WHEAT Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1	Back alignment and function description

>sp\|P20973\|UBE11_WHEAT Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1	Back alignment and function description

>sp\|P31252\|UBE13_WHEAT Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1	Back alignment and function description

>sp\|Q29504\|UBA1_RABIT Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1	Back alignment and function description

>sp\|P22314\|UBA1_HUMAN Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3	Back alignment and function description

>sp\|A3KMV5\|UBA1_BOVIN Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1	Back alignment and function description

>sp\|P22515\|UBA1_YEAST Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBA1 PE=1 SV=2	Back alignment and function description

>sp\|P31254\|UBA1Y_MOUSE Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
359478703		1100	PREDICTED: ubiquitin-activating enzyme E	0.986	0.717	0.902	0.0
224103883		1018	predicted protein [Populus trichocarpa]	0.992	0.779	0.878	0.0
297826405		1083	hypothetical protein ARALYDRAFT_481921 [	0.993	0.734	0.872	0.0
356498972		1106	PREDICTED: ubiquitin-activating enzyme E	0.998	0.722	0.896	0.0
356553102		1108	PREDICTED: ubiquitin-activating enzyme E	0.998	0.721	0.896	0.0
255571336		1107	ubiquitin-activating enzyme E1, putative	0.993	0.718	0.882	0.0
224059848		1018	predicted protein [Populus trichocarpa]	0.992	0.779	0.863	0.0
341657646		1094	ubiquitin activating enzyme E1 [Camellia	0.993	0.726	0.86	0.0
357491029		1180	Ubiquitin-activating enzyme E1 [Medicago	0.993	0.673	0.88	0.0
357491027		1179	Ubiquitin-activating enzyme E1 [Medicago	0.993	0.674	0.88	0.0

>gi\|359478703\|ref\|XP_002275617.2\| PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1502 bits (3888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/799 (90%), Positives = 765/799 (95%)

Query: 1    MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPG 60
            MTELNDGKPRKIK+ARPYSFTLEEDTTN+GTY KGGIVTQVKQPKVLNFKPLREAL DPG
Sbjct: 301  MTELNDGKPRKIKNARPYSFTLEEDTTNFGTYEKGGIVTQVKQPKVLNFKPLREALSDPG 360

Query: 61   DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGR 120
            DFLLSDFSKFDRPP LHLAFQALD+F+SELGRFPVAGSEEDAQKLI +++NINE LGDG+
Sbjct: 361  DFLLSDFSKFDRPPLLHLAFQALDRFISELGRFPVAGSEEDAQKLIFISSNINEGLGDGK 420

Query: 121  VEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPT 180
            +EDIN KLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPL+QFFYFDSVESLPT
Sbjct: 421  LEDINPKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPT 480

Query: 181  EPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGN 240
            E  DS++FKP+NSRYDAQISVFG+KLQKKLEDA VF+VGSGALGCEFLKNVALMGVSCGN
Sbjct: 481  EAPDSSDFKPLNSRYDAQISVFGSKLQKKLEDAVVFMVGSGALGCEFLKNVALMGVSCGN 540

Query: 241  QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPET 300
            QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAA +INP L+IEALQNRVGPET
Sbjct: 541  QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAQTINPCLHIEALQNRVGPET 600

Query: 301  ENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE 360
            ENVF+D FWEN++ VINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE
Sbjct: 601  ENVFNDAFWENLSVVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE 660

Query: 361  NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTS 420
            NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNA+LSNP EY ++
Sbjct: 661  NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAFLSNPTEYASA 720

Query: 421  MANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAAT 480
            M NAGDAQARDNLERVLECL++E+CE FQDCITWARL+FEDYF NRVKQLIFTFPEDAAT
Sbjct: 721  MRNAGDAQARDNLERVLECLERERCETFQDCITWARLRFEDYFVNRVKQLIFTFPEDAAT 780

Query: 481  STGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVD 540
            STGAPFWSAPKRFPHPLQFS+AD  HL+FVMAASILRAETFGIPIPDW  +PK LAEAVD
Sbjct: 781  STGAPFWSAPKRFPHPLQFSAADAGHLYFVMAASILRAETFGIPIPDWAKHPKKLAEAVD 840

Query: 541  KVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQF 600
            KV+VP+F PK D KI+TDEKAT+LSTASVDDAAVIN+L+ K+EQ  K+LP GFR+ PIQF
Sbjct: 841  KVIVPEFQPKTDVKIVTDEKATSLSTASVDDAAVINELLAKIEQSWKSLPPGFRMNPIQF 900

Query: 601  EKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 660
            EKDDDTNYHMD+IAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL
Sbjct: 901  EKDDDTNYHMDLIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 960

Query: 661  YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLREL 720
            YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLREL
Sbjct: 961  YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLREL 1020

Query: 721  IQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVV 780
            +QWLKDKGLNAYSISCGSCLL+NSMFPRH+ERMDKKVVDLAREVAKVELP YR HLDVVV
Sbjct: 1021 LQWLKDKGLNAYSISCGSCLLYNSMFPRHRERMDKKVVDLAREVAKVELPAYRSHLDVVV 1080

Query: 781  ACEDDEDNDIDIPLISIYF 799
            ACEDDEDNDIDIP +SIYF
Sbjct: 1081 ACEDDEDNDIDIPQVSIYF 1099

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224103883\|ref\|XP_002313231.1\| predicted protein [Populus trichocarpa] gi\|222849639\|gb\|EEE87186.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297826405\|ref\|XP_002881085.1\| hypothetical protein ARALYDRAFT_481921 [Arabidopsis lyrata subsp. lyrata] gi\|297326924\|gb\|EFH57344.1\| hypothetical protein ARALYDRAFT_481921 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356498972\|ref\|XP_003518319.1\| PREDICTED: ubiquitin-activating enzyme E1 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356553102\|ref\|XP_003544897.1\| PREDICTED: ubiquitin-activating enzyme E1 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|255571336\|ref\|XP_002526617.1\| ubiquitin-activating enzyme E1, putative [Ricinus communis] gi\|223534057\|gb\|EEF35776.1\| ubiquitin-activating enzyme E1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224059848\|ref\|XP_002300000.1\| predicted protein [Populus trichocarpa] gi\|222847258\|gb\|EEE84805.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|341657646\|gb\|AEK86562.1\| ubiquitin activating enzyme E1 [Camellia sinensis]	Back alignment and taxonomy information

>gi\|357491029\|ref\|XP_003615802.1\| Ubiquitin-activating enzyme E1 [Medicago truncatula] gi\|355517137\|gb\|AES98760.1\| Ubiquitin-activating enzyme E1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357491027\|ref\|XP_003615801.1\| Ubiquitin-activating enzyme E1 [Medicago truncatula] gi\|355517136\|gb\|AES98759.1\| Ubiquitin-activating enzyme E1 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
TAIR\|locus:2060854		1080	UBA1 "ubiquitin-activating enz	1.0	0.740	0.852	0.0
TAIR\|locus:2164270		1077	UBA 2 "ubiquitin activating en	0.998	0.741	0.823	0.0
ASPGD\|ASPL0000051011		1033	AN10266 [Emericella nidulans (	0.982	0.760	0.451	1.3e-185
CGD\|CAL0005518		1021	UBA1 [Candida albicans (taxid:	0.976	0.764	0.449	7.6e-185
UNIPROTKB\|A3KMV5		1058	UBA1 "Ubiquitin-like modifier-	0.987	0.746	0.440	1.5e-184
UNIPROTKB\|P22314		1058	UBA1 "Ubiquitin-like modifier-	0.987	0.746	0.441	3.2e-184
SGD\|S000001693		1024	UBA1 "Ubiquitin activating enz	0.986	0.770	0.439	3.7e-183
UNIPROTKB\|F1RWX8		1058	UBA1 "Uncharacterized protein"	0.988	0.747	0.437	4.2e-182
ZFIN\|ZDB-GENE-040426-2009		1058	uba1 "ubiquitin-like modifier	0.981	0.741	0.437	4.8e-181
UNIPROTKB\|G4MZI8		1037	MGG_01409 "Ubiquitin-activatin	0.982	0.757	0.442	1.3e-180

TAIR\|locus:2060854 UBA1 "ubiquitin-activating enzyme 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3683 (1301.5 bits), Expect = 0., P = 0.
 Identities = 682/800 (85%), Positives = 743/800 (92%)

Query:     1 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPG 60
             MTELNDGKPRKIKS RPYSFTL+EDTTNYGTYVKGGIVTQVKQPK+LNFKPLREAL+DPG
Sbjct:   281 MTELNDGKPRKIKSTRPYSFTLDEDTTNYGTYVKGGIVTQVKQPKLLNFKPLREALKDPG 340

Query:    61 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGR 120
             DFL SDFSKFDRPP LHLAFQALD F +E GRFPVAGSEEDAQKLIS+AT IN   GD +
Sbjct:   341 DFLFSDFSKFDRPPLLHLAFQALDHFKAEAGRFPVAGSEEDAQKLISIATAINTGQGDLK 400

Query:   121 VEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPT 180
             VE+++ KLLRHF+FGA+AVLNPMAAMFGGIVGQEVVKACSGKFHPL+QFFYFDSVESLP+
Sbjct:   401 VENVDQKLLRHFSFGAKAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPS 460

Query:   181 EPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGN 240
             EP+DS++F P NSRYDAQISVFGAK QKKLEDAKVF VGSGALGCEFLKN+ALMGVSCG+
Sbjct:   461 EPVDSSDFAPRNSRYDAQISVFGAKFQKKLEDAKVFTVGSGALGCEFLKNLALMGVSCGS 520

Query:   241 QGKLTITDDDVIEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPET 300
             QGKLT+TDDD+IEKSNLSRQFLFRDWNIGQ            INPR NIEALQNRVG ET
Sbjct:   521 QGKLTVTDDDIIEKSNLSRQFLFRDWNIGQAKSTVAASAAAVINPRFNIEALQNRVGAET 580

Query:   301 ENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTE 360
             ENVFDD FWEN+T V+NALDNVNARLYVD RCLYFQKPLLESGTLG KCNTQ VIPHLTE
Sbjct:   581 ENVFDDAFWENLTVVVNALDNVNARLYVDSRCLYFQKPLLESGTLGTKCNTQSVIPHLTE 640

Query:   361 NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTS 420
             NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLS+PVEYT S
Sbjct:   641 NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSSPVEYTNS 700

Query:   421 MANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAAT 480
             M +AGDAQARD LER++ECL+KEKCE FQDC+TWARL+FEDYF NRVKQLI+TFPEDAAT
Sbjct:   701 MMSAGDAQARDTLERIVECLEKEKCETFQDCLTWARLRFEDYFVNRVKQLIYTFPEDAAT 760

Query:   481 STGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVD 540
             STGAPFWSAPKRFP PLQ+SS+DPS L+F+ A +ILRAETFGIPIP+WT NPK  AEAVD
Sbjct:   761 STGAPFWSAPKRFPRPLQYSSSDPSLLNFITATAILRAETFGIPIPEWTKNPKEAAEAVD 820

Query:   541 KVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQF 600
             +V+VPDF P++DAKI+TDEKATTL+TASVDDAAVI+DLI K++QCR NL   FR+KPIQF
Sbjct:   821 RVIVPDFEPRQDAKIVTDEKATTLTTASVDDAAVIDDLIAKIDQCRHNLSPDFRMKPIQF 880

Query:   601 EKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 660
             EKDDDTNYHMD+IAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL
Sbjct:   881 EKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 940

Query:   661 YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLREL 720
             YKVLDGGHK+E YRNTFANLALPLFSMAEP+PPKV+KHRDM+WTVWDRW+LK NPTLRE+
Sbjct:   941 YKVLDGGHKVEAYRNTFANLALPLFSMAEPLPPKVVKHRDMAWTVWDRWVLKGNPTLREV 1000

Query:   721 IQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVV 780
             +QWL+DKGL+AYSISCGSCLLFNSMF RHKERMDKKVVDLAR+VAKVELPPYR HLDVVV
Sbjct:  1001 LQWLEDKGLSAYSISCGSCLLFNSMFTRHKERMDKKVVDLARDVAKVELPPYRNHLDVVV 1060

Query:   781 ACEDDEDNDIDIPLISIYFR 800
             ACED++DND+DIPL+SIYFR
Sbjct:  1061 ACEDEDDNDVDIPLVSIYFR 1080

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004839 "ubiquitin activating enzyme activity" evidence=ISS;IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0051707 "response to other organism" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR\|locus:2164270 UBA 2 "ubiquitin activating enzyme 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000051011 AN10266 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

CGD\|CAL0005518 UBA1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|A3KMV5 UBA1 "Ubiquitin-like modifier-activating enzyme 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P22314 UBA1 "Ubiquitin-like modifier-activating enzyme 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

SGD\|S000001693 UBA1 "Ubiquitin activating enzyme (E1)" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RWX8 UBA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-2009 uba1 "ubiquitin-like modifier activating enzyme 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|G4MZI8 MGG_01409 "Ubiquitin-activating enzyme E1 1" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93028	UBE11_ARATH	No assigned EC number	0.865	0.9937	0.7361	yes	no
P31252	UBE13_WHEAT	No assigned EC number	0.755	0.9937	0.7549	N/A	no
P31251	UBE12_WHEAT	No assigned EC number	0.7865	1.0	0.7611	N/A	no
P20973	UBE11_WHEAT	No assigned EC number	0.7865	1.0	0.7611	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		800
TIGR01408		1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	0.0
cd01490		435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	1e-177
cd01490		435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	1e-77
cd01484		234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	1e-64
pfam09358		124	pfam09358, UBA_e1_C, Ubiquitin-activating enzyme e	5e-52
smart00985		128	smart00985, UBA_e1_C, Ubiquitin-activating enzyme	1e-44
cd01489		312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	4e-44
pfam00899		134	pfam00899, ThiF, ThiF family	1e-39
COG0476		254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	4e-35
cd00757		228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	2e-33
cd01483		143	cd01483, E1_enzyme_family, Superfamily of activati	4e-32
cd01488		291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	2e-31
TIGR02356		202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	2e-25
pfam02134		66	pfam02134, UBACT, Repeat in ubiquitin-activating (	4e-24
TIGR02355		240	TIGR02355, moeB, molybdopterin synthase sulfurylas	2e-22
cd01491		286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	4e-22
PRK05690		245	PRK05690, PRK05690, molybdopterin biosynthesis pro	1e-21
PRK08762		376	PRK08762, PRK08762, molybdopterin biosynthesis pro	1e-19
cd01492		197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	5e-18
pfam10585		44	pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e	8e-18
PRK08644		212	PRK08644, PRK08644, thiamine biosynthesis protein	2e-17
PRK05600		370	PRK05600, PRK05600, thiamine biosynthesis protein	6e-15
PRK05597		355	PRK05597, PRK05597, molybdopterin biosynthesis pro	7e-15
PRK07688		339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	8e-15
PRK12475		338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	2e-14
cd00755		231	cd00755, YgdL_like, Family of activating enzymes (	2e-14
cd01485		198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	9e-14
cd01484		234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	2e-13
cd01489		312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	4e-13
PRK08328		231	PRK08328, PRK08328, hypothetical protein; Provisio	5e-13
COG1179		263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	8e-13
cd01491		286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	1e-12
PRK07878		392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	3e-12
cd01491		286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	7e-12
TIGR02354		200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	7e-12
cd01493		425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	3e-10
PRK07411		390	PRK07411, PRK07411, hypothetical protein; Validate	4e-10
cd01487		174	cd01487, E1_ThiF_like, E1_ThiF_like	4e-10
PRK08223		287	PRK08223, PRK08223, hypothetical protein; Validate	8e-10
PRK14852		989	PRK14852, PRK14852, hypothetical protein; Provisio	4e-08
PRK14851		679	PRK14851, PRK14851, hypothetical protein; Provisio	1e-07
cd01485		198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	2e-07
TIGR01408		1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	3e-07
PRK15116		268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	5e-06
cd01492		197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	5e-05
pfam02134		66	pfam02134, UBACT, Repeat in ubiquitin-activating (	8e-05
cd01486		307	cd01486, Apg7, Apg7 is an E1-like protein, that ac	3e-04
cd01488		291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	0.001

>gnl\|CDD\|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1	Back alignment and domain information

 Score = 1294 bits (3350), Expect = 0.0
 Identities = 409/803 (50%), Positives = 530/803 (66%), Gaps = 7/803 (0%)

Query: 1    MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPG 60
            MT LNDG PRKI    PYSF++ + T   G Y+ GGI TQVK PK + FK LRE L+DP 
Sbjct: 210  MTGLNDGSPRKITVISPYSFSIGDTTE-LGPYLHGGIATQVKTPKTVFFKSLREQLKDP- 267

Query: 61   DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGR 120
              L+ DFSK +RPP +H AFQALD+F  +  R P  G ++DA++L+ +AT+I+E+  + +
Sbjct: 268  KCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATSISET-LEEK 326

Query: 121  VEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPT 180
            V D++ KL+   ++ A+  L+PMAA  GG+V QEV+KA +GKF PL Q+FYFDS ESLP+
Sbjct: 327  VPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPS 386

Query: 181  E-PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCG 239
                +  EF P   RYDAQI+VFG   Q+KL++  +F+VG GA+GCE LKN ALMGV  G
Sbjct: 387  LGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTG 446

Query: 240  NQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPE 299
             +G +T+TD D+IEKSNL+RQFLFR  +IG+ KS  AA A   INP++ I+A QNRVGPE
Sbjct: 447  KKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPE 506

Query: 300  TENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLT 359
            TE +F+D F+E +  VINALDNV AR YVD RCL F KPLLESGTLG K NTQ+V+PHLT
Sbjct: 507  TETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLT 566

Query: 360  ENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTT 419
            E+YG+SRDPPEK+ P CT+ SFP  I+H + WAR +FEGL    P+ VN YLS+P     
Sbjct: 567  ESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSSAEE 626

Query: 420  SMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAA 479
             +       +R+ LE++++ L KEK   F  C+ WARLKFE YF+N+  QL+  FP D  
Sbjct: 627  VLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIR 686

Query: 480  TSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAV 539
            TSTG+PFWS+PKR P PL+F   +P HL F+ AA+ L A  +GIP  +   +   L   +
Sbjct: 687  TSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNIL 746

Query: 540  DKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQ 599
             +V +P+F P+ + KI TDE A    TA  DD   I  L   +        S FR+ P+ 
Sbjct: 747  SEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATK-SDFRMAPLS 805

Query: 600  FEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 659
            FEKDDD N H+D I   +N+RA+NYSI   D+ K KFIAG+IIPAIATSTA  +GLVCLE
Sbjct: 806  FEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLE 865

Query: 660  LYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSW-TVWDRWILKDNPTLR 718
            L KV DGG+K E Y+N F NLA+PLF   EP   +  K R+    T+WDRW L  + TL 
Sbjct: 866  LIKVTDGGYKFEVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLL 925

Query: 719  ELIQWLK-DKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLD 777
            E I  +K   GL    +S G  LL+  + P H ER+  K+  L +   K +LPPYR HL 
Sbjct: 926  EFINAVKEKYGLEPTMVSQGVKLLYVPVMPGHAERLKLKMHKLVKPTTKKKLPPYRVHLT 985

Query: 778  VVVACEDDEDNDIDIPLISIYFR 800
            V  AC+DD D D+  P + IYF 
Sbjct: 986  VSFACDDDGDEDVPGPPVRIYFS 1008

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl\|CDD\|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2	Back alignment and domain information

>gnl\|CDD\|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2	Back alignment and domain information

>gnl\|CDD\|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like	Back alignment and domain information

>gnl\|CDD\|220201 pfam09358, UBA_e1_C, Ubiquitin-activating enzyme e1 C-terminal domain	Back alignment and domain information

>gnl\|CDD\|214955 smart00985, UBA_e1_C, Ubiquitin-activating enzyme e1 C-terminal domain	Back alignment and domain information

>gnl\|CDD\|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2	Back alignment and domain information

>gnl\|CDD\|216180 pfam00899, ThiF, ThiF family	Back alignment and domain information

>gnl\|CDD\|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	Back alignment and domain information

>gnl\|CDD\|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins	Back alignment and domain information

>gnl\|CDD\|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3	Back alignment and domain information

>gnl\|CDD\|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E	Back alignment and domain information

>gnl\|CDD\|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein	Back alignment and domain information

>gnl\|CDD\|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB	Back alignment and domain information

>gnl\|CDD\|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>gnl\|CDD\|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	Back alignment and domain information

>gnl\|CDD\|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated	Back alignment and domain information

>gnl\|CDD\|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1	Back alignment and domain information

>gnl\|CDD\|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site	Back alignment and domain information

>gnl\|CDD\|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional	Back alignment and domain information

>gnl\|CDD\|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated	Back alignment and domain information

>gnl\|CDD\|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated	Back alignment and domain information

>gnl\|CDD\|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	Back alignment and domain information

>gnl\|CDD\|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E	Back alignment and domain information

>gnl\|CDD\|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like	Back alignment and domain information

>gnl\|CDD\|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like	Back alignment and domain information

>gnl\|CDD\|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2	Back alignment and domain information

>gnl\|CDD\|169382 PRK08328, PRK08328, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>gnl\|CDD\|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated	Back alignment and domain information

>gnl\|CDD\|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>gnl\|CDD\|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2	Back alignment and domain information

>gnl\|CDD\|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1	Back alignment and domain information

>gnl\|CDD\|180967 PRK07411, PRK07411, hypothetical protein; Validated	Back alignment and domain information

>gnl\|CDD\|238764 cd01487, E1_ThiF_like, E1_ThiF_like	Back alignment and domain information

>gnl\|CDD\|181302 PRK08223, PRK08223, hypothetical protein; Validated	Back alignment and domain information

>gnl\|CDD\|184854 PRK14852, PRK14852, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|184853 PRK14851, PRK14851, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like	Back alignment and domain information

>gnl\|CDD\|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1	Back alignment and domain information

>gnl\|CDD\|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional	Back alignment and domain information

>gnl\|CDD\|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1	Back alignment and domain information

>gnl\|CDD\|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein	Back alignment and domain information

>gnl\|CDD\|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively	Back alignment and domain information

>gnl\|CDD\|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		800
KOG2012		1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	100.0
TIGR01408		1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
cd01490		435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	100.0
KOG2013		603	consensus SMT3/SUMO-activating complex, catalytic	100.0
cd01489		312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01484		234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
cd01488		291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
KOG2015		422	consensus NEDD8-activating complex, catalytic comp	100.0
PRK08223		287	hypothetical protein; Validated	100.0
TIGR02356		202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
PRK05690		245	molybdopterin biosynthesis protein MoeB; Provision	100.0
cd00757		228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK07411		390	hypothetical protein; Validated	100.0
PRK08328		231	hypothetical protein; Provisional	100.0
PRK05597		355	molybdopterin biosynthesis protein MoeB; Validated	100.0
TIGR02355		240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
cd01492		197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01493		425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	100.0
cd01491		286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
PRK07878		392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
PRK05600		370	thiamine biosynthesis protein ThiF; Validated	100.0
cd01485		198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
PRK12475		338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK07688		339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
COG0476		254	ThiF Dinucleotide-utilizing enzymes involved in mo	99.98
PRK08762		376	molybdopterin biosynthesis protein MoeB; Validated	99.97
KOG2017		427	consensus Molybdopterin synthase sulfurylase [Coen	99.97
PRK14851		679	hypothetical protein; Provisional	99.97
TIGR03736		244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.97
PF09358		125	UBA_e1_C: Ubiquitin-activating enzyme e1 C-termina	99.97
PRK14852		989	hypothetical protein; Provisional	99.97
PRK15116		268	sulfur acceptor protein CsdL; Provisional	99.97
PRK07877		722	hypothetical protein; Provisional	99.96
cd00755		231	YgdL_like Family of activating enzymes (E1) of ubi	99.96
PRK08644		212	thiamine biosynthesis protein ThiF; Provisional	99.96
PF00899		135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.95
TIGR01408		1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.95
TIGR01381		664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.95
COG1179		263	Dinucleotide-utilizing enzymes involved in molybdo	99.94
cd01483		143	E1_enzyme_family Superfamily of activating enzymes	99.94
TIGR03603		318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.94
cd01486		307	Apg7 Apg7 is an E1-like protein, that activates tw	99.93
cd01487		174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.93
PTZ00245		287	ubiquitin activating enzyme; Provisional	99.92
TIGR02354		200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.92
KOG2016		523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	99.91
KOG2014		331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	99.91
PRK06153		393	hypothetical protein; Provisional	99.9
cd01491		286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	99.88
PF02134		67	UBACT: Repeat in ubiquitin-activating (UBA) protei	99.87
KOG2336		422	consensus Molybdopterin biosynthesis-related prote	99.86
KOG2018		430	consensus Predicted dinucleotide-utilizing enzyme	99.81
KOG2012		1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.8
KOG2014		331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	99.7
KOG2016		523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	99.66
PF10585		45	UBA_e1_thiolCys: Ubiquitin-activating enzyme activ	99.56
TIGR03693		637	ocin_ThiF_like putative thiazole-containing bacter	99.49
KOG2337		669	consensus Ubiquitin activating E1 enzyme-like prot	99.34
cd01493		425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	99.34
PF02134		67	UBACT: Repeat in ubiquitin-activating (UBA) protei	98.27
PF08825		84	E2_bind: E2 binding domain; InterPro: IPR014929 E1	97.67
cd01490		435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	97.65
TIGR03882		193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	97.5
COG1748		389	LYS9 Saccharopine dehydrogenase and related protei	97.38
PRK12549		284	shikimate 5-dehydrogenase; Reviewed	97.12
PF01488		135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.02
PRK06718		202	precorrin-2 dehydrogenase; Reviewed	96.88
COG4015		217	Predicted dinucleotide-utilizing enzyme of the Thi	96.87
PF13241		103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.43
PRK06719		157	precorrin-2 dehydrogenase; Validated	96.42
TIGR01470		205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.34
PF03435		386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.86
PRK05562		223	precorrin-2 dehydrogenase; Provisional	95.79
PRK07819		286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.65
PRK14027		283	quinate/shikimate dehydrogenase; Provisional	95.24
PRK07066		321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.19
TIGR01809		282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.07
PRK12548		289	shikimate 5-dehydrogenase; Provisional	95.04
PF14732		87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	95.0
PRK00258		278	aroE shikimate 5-dehydrogenase; Reviewed	94.88
PF01113		124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.85
COG0373		414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.77
PF02737		180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.56
PF00070		80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.53
PRK13940		414	glutamyl-tRNA reductase; Provisional	94.46
cd01492		197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.39
PRK14106		450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.26
cd01065		155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	94.25
PRK12749		288	quinate/shikimate dehydrogenase; Reviewed	94.24
PF02826		178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.15
PRK05808		282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.08
COG1648		210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.88
COG0169		283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	93.71
PF05237		84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	93.47
KOG4169		261	consensus 15-hydroxyprostaglandin dehydrogenase an	93.43
cd01485		198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.25
PRK06130		311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.24
cd01489		312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	93.2
cd05311		226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.11
PRK04148		134	hypothetical protein; Provisional	93.07
COG0111		324	SerA Phosphoglycerate dehydrogenase and related de	92.77
cd05291		306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	92.75
PRK09260		288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.72
cd01080		168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	92.66
PF00056		141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	92.58
PRK08293		287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.54
PF01118		121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	92.27
PRK10637		457	cysG siroheme synthase; Provisional	92.2
COG0569		225	TrkA K+ transport systems, NAD-binding component [	92.03
PRK00066		315	ldh L-lactate dehydrogenase; Reviewed	91.98
cd05290		307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	91.97
PF03446		163	NAD_binding_2: NAD binding domain of 6-phosphogluc	91.79
PF10585		45	UBA_e1_thiolCys: Ubiquitin-activating enzyme activ	91.74
PRK13403		335	ketol-acid reductoisomerase; Provisional	91.61
PTZ00082		321	L-lactate dehydrogenase; Provisional	91.29
cd05293		312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.26
PRK06197		306	short chain dehydrogenase; Provisional	91.2
PRK07530		292	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.06
PRK05854		313	short chain dehydrogenase; Provisional	90.97
cd01078		194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.85
PLN02602		350	lactate dehydrogenase	90.77
PRK07531		495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	90.68
PRK06035		291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.65
PRK07063		260	short chain dehydrogenase; Provisional	90.61
PLN02819		1042	lysine-ketoglutarate reductase/saccharopine dehydr	90.59
PF01210		157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	90.59
PRK08410		311	2-hydroxyacid dehydrogenase; Provisional	90.51
COG1086		588	Predicted nucleoside-diphosphate sugar epimerases	90.5
COG0300		265	DltE Short-chain dehydrogenases of various substra	90.35
PRK15469		312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	90.19
cd00300		300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	90.18
PRK05476		425	S-adenosyl-L-homocysteine hydrolase; Provisional	90.1
PRK00048		257	dihydrodipicolinate reductase; Provisional	90.07
TIGR00872		298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	89.97
PRK06487		317	glycerate dehydrogenase; Provisional	89.95
PF02558		151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	89.92
PRK13243		333	glyoxylate reductase; Reviewed	89.82
PRK14192		283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.78
PRK11154		708	fadJ multifunctional fatty acid oxidation complex	89.72
PRK14619		308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.54
PRK15438		378	erythronate-4-phosphate dehydrogenase PdxB; Provis	89.47
cd05191		86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	89.31
PRK07062		265	short chain dehydrogenase; Provisional	89.16
PF03807		96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	89.11
COG1250		307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	88.93
PRK09242		257	tropinone reductase; Provisional	88.77
PRK06932		314	glycerate dehydrogenase; Provisional	88.7
PF10727		127	Rossmann-like: Rossmann-like domain; InterPro: IPR	88.61
PRK00257		381	erythronate-4-phosphate dehydrogenase; Validated	88.56
PRK11730		715	fadB multifunctional fatty acid oxidation complex	88.39
PRK06436		303	glycerate dehydrogenase; Provisional	88.36
PRK09599		301	6-phosphogluconate dehydrogenase-like protein; Rev	88.22
PLN03209		576	translocon at the inner envelope of chloroplast su	88.19
PF02056		183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	88.09
PRK08618		325	ornithine cyclodeaminase; Validated	88.07
TIGR02437		714	FadB fatty oxidation complex, alpha subunit FadB.	87.97
PRK08251		248	short chain dehydrogenase; Provisional	87.86
TIGR00507		270	aroE shikimate 5-dehydrogenase. This model finds p	87.85
TIGR00465		314	ilvC ketol-acid reductoisomerase. This is the seco	87.84
PRK11908		347	NAD-dependent epimerase/dehydratase family protein	87.82
cd01075		200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	87.77
TIGR02440		699	FadJ fatty oxidation complex, alpha subunit FadJ.	87.63
PRK05708		305	2-dehydropantoate 2-reductase; Provisional	87.59
PRK07831		262	short chain dehydrogenase; Provisional	87.48
PRK11880		267	pyrroline-5-carboxylate reductase; Reviewed	87.42
PLN02780		320	ketoreductase/ oxidoreductase	87.22
PLN03139		386	formate dehydrogenase; Provisional	87.2
PTZ00117		319	malate dehydrogenase; Provisional	86.74
PLN02206		442	UDP-glucuronate decarboxylase	86.67
COG1893		307	ApbA Ketopantoate reductase [Coenzyme metabolism]	86.65
cd01488		291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	86.47
PRK07576		264	short chain dehydrogenase; Provisional	86.42
PRK07478		254	short chain dehydrogenase; Provisional	86.35
PRK05867		253	short chain dehydrogenase; Provisional	86.25
COG0136		334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	86.23
TIGR02441		737	fa_ox_alpha_mit fatty acid oxidation complex, alph	86.18
PRK12826		251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	86.12
TIGR01035		417	hemA glutamyl-tRNA reductase. This enzyme, togethe	85.9
PRK05335		436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	85.86
PF00106		167	adh_short: short chain dehydrogenase alcohol dehyd	85.83
PRK06523		260	short chain dehydrogenase; Provisional	85.71
PRK09496		453	trkA potassium transporter peripheral membrane com	85.69
PLN02350		493	phosphogluconate dehydrogenase (decarboxylating)	85.66
PF02719		293	Polysacc_synt_2: Polysaccharide biosynthesis prote	85.41
PRK07634		245	pyrroline-5-carboxylate reductase; Reviewed	85.31
PRK08217		253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.28
PF13460		183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	85.25
PRK06522		304	2-dehydropantoate 2-reductase; Reviewed	85.04
COG1063		350	Tdh Threonine dehydrogenase and related Zn-depende	84.88
PRK13304		265	L-aspartate dehydrogenase; Reviewed	84.68
PRK06249		313	2-dehydropantoate 2-reductase; Provisional	84.67
PRK11790		409	D-3-phosphoglycerate dehydrogenase; Provisional	84.59
PRK06476		258	pyrroline-5-carboxylate reductase; Reviewed	84.26
PRK06141		314	ornithine cyclodeaminase; Validated	84.26
PLN02306		386	hydroxypyruvate reductase	84.25
cd05213		311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	84.19
PRK09186		256	flagellin modification protein A; Provisional	84.16
PRK07792		306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.13
PRK12367		245	short chain dehydrogenase; Provisional	83.95
PRK14982		340	acyl-ACP reductase; Provisional	83.89
PTZ00431		260	pyrroline carboxylate reductase; Provisional	83.88
KOG0024		354	consensus Sorbitol dehydrogenase [Secondary metabo	83.76
PLN02166		436	dTDP-glucose 4,6-dehydratase	83.6
PRK12490		299	6-phosphogluconate dehydrogenase-like protein; Rev	83.56
TIGR00873		467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	83.49
cd00762		254	NAD_bind_malic_enz NAD(P) binding domain of malic	83.45
PRK07067		257	sorbitol dehydrogenase; Provisional	83.44
PRK00676		338	hemA glutamyl-tRNA reductase; Validated	83.42
PRK12480		330	D-lactate dehydrogenase; Provisional	83.4
PRK14175		286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.29
TIGR02853		287	spore_dpaA dipicolinic acid synthetase, A subunit.	83.24
PLN02427		386	UDP-apiose/xylose synthase	83.11
cd05296		419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	83.01
PRK00045		423	hemA glutamyl-tRNA reductase; Reviewed	83.01
PRK10537		393	voltage-gated potassium channel; Provisional	82.9
PRK12550		272	shikimate 5-dehydrogenase; Reviewed	82.87
cd05298		437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	82.84
PRK15409		323	bifunctional glyoxylate/hydroxypyruvate reductase	82.82
TIGR00137		433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	82.63
TIGR02992		326	ectoine_eutC ectoine utilization protein EutC. Mem	82.53
PTZ00142		470	6-phosphogluconate dehydrogenase; Provisional	82.52
PRK07814		263	short chain dehydrogenase; Provisional	82.44
KOG1209		289	consensus 1-Acyl dihydroxyacetone phosphate reduct	82.42
cd05211		217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	82.19
PRK05875		276	short chain dehydrogenase; Provisional	82.13
PRK07340		304	ornithine cyclodeaminase; Validated	82.11
PRK05690		245	molybdopterin biosynthesis protein MoeB; Provision	82.1
PRK09496		453	trkA potassium transporter peripheral membrane com	82.08
PRK12384		259	sorbitol-6-phosphate dehydrogenase; Provisional	81.97
TIGR03206		250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	81.89
PRK06139		330	short chain dehydrogenase; Provisional	81.75
PRK05866		293	short chain dehydrogenase; Provisional	81.63
PLN02545		295	3-hydroxybutyryl-CoA dehydrogenase	81.59
PRK08328		231	hypothetical protein; Provisional	81.55
TIGR03466		328	HpnA hopanoid-associated sugar epimerase. The sequ	81.51
PRK03562		621	glutathione-regulated potassium-efflux system prot	81.31
PRK08229		341	2-dehydropantoate 2-reductase; Provisional	81.26
PRK12827		249	short chain dehydrogenase; Provisional	81.19
TIGR02355		240	moeB molybdopterin synthase sulfurylase MoeB. This	81.16
PRK08291		330	ectoine utilization protein EutC; Validated	81.14
PF02254		116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	81.1
KOG1205		282	consensus Predicted dehydrogenase [Secondary metab	80.95
TIGR02632		676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	80.94
PRK12409		410	D-amino acid dehydrogenase small subunit; Provisio	80.92
COG1712		255	Predicted dinucleotide-utilizing enzyme [General f	80.86
PRK08655		437	prephenate dehydrogenase; Provisional	80.85
PRK06398		258	aldose dehydrogenase; Validated	80.82
PRK03659		601	glutathione-regulated potassium-efflux system prot	80.82
cd05292		308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	80.69
PRK06720		169	hypothetical protein; Provisional	80.69
PRK07856		252	short chain dehydrogenase; Provisional	80.69
TIGR01327		525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	80.69
PLN00203		519	glutamyl-tRNA reductase	80.63
PRK07097		265	gluconate 5-dehydrogenase; Provisional	80.53
PLN02928		347	oxidoreductase family protein	80.45
PRK07102		243	short chain dehydrogenase; Provisional	80.41
PLN00106		323	malate dehydrogenase	80.38
PRK08125		660	bifunctional UDP-glucuronic acid decarboxylase/UDP	80.35
PLN02968		381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	80.3
PRK11259		376	solA N-methyltryptophan oxidase; Provisional	80.26
PRK06129		308	3-hydroxyacyl-CoA dehydrogenase; Validated	80.25
TIGR01181		317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	80.14
PF01494		356	FAD_binding_3: FAD binding domain; InterPro: IPR00	80.11
PRK07453		322	protochlorophyllide oxidoreductase; Validated	80.04

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1.7e-212  Score=1767.91  Aligned_cols=789  Identities=59%  Similarity=1.025  Sum_probs=765.9

Q ss_pred             CCCCCCCCceeEEEcCCceEEEecCCCccCccccCceEEEEeeceEEecccHHHHhcCCCccccccCcCCCCCchHHHHH
Q 003729            1 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAF   80 (800)
Q Consensus         1 m~~ln~~~~~~i~v~~~~~f~i~~dt~~~~~y~~gg~~~qvK~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~l   80 (800)
                      |+|||||+|++|+|++||+|+| |||+.|++|++||+++|||+|++++||||+++|..| +++.+||.|++|++++|.+|
T Consensus       221 m~eLN~~~P~kI~v~~p~sf~I-gdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af  298 (1013)
T KOG2012|consen  221 MTELNDCKPRKITVLGPYSFSI-GDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAF  298 (1013)
T ss_pred             ccccCCCCceEEEEecCceEEe-ccccchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHH
Confidence            8999999999999999999999 999999999999999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhhhccccchhHHHhhhhhhhhhhhccc
Q 003729           81 QALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACS  160 (800)
Q Consensus        81 ~aL~~F~~~~gr~P~~~~~~D~~~l~~i~~~i~~~~~~~~~~~l~~~~i~~~~~~~~~el~PvaA~iGGi~aQEviK~it  160 (800)
                      +||++|+++|||+|.|++++|+++|++++..+.+..+  ...++++++|++|+.++++.+.||+|++||++||||+|+||
T Consensus       299 ~AL~~F~~~~Gr~P~p~~e~DA~~l~~l~~~i~~~~~--~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~s  376 (1013)
T KOG2012|consen  299 QALHQFQEAHGRLPRPGNEEDAEELVELARDISEGLG--LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACS  376 (1013)
T ss_pred             HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhhhhcc--ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhc
Confidence            9999999999999999999999999999999988764  34589999999999999999999999999999999999999


Q ss_pred             CccccccceeeecccCCCCCC--CCCccCCCCccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhcccc
Q 003729          161 GKFHPLYQFFYFDSVESLPTE--PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSC  238 (800)
Q Consensus       161 ~k~~Pi~q~~~fd~~~~l~~~--~l~~~~~~~~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~  238 (800)
                      |||+||.||||||++|+||+.  +++++++.|.++|||.||++||...|+||.++++++|||||||||+|||||+|||+|
T Consensus       377 gKF~PL~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~  456 (1013)
T KOG2012|consen  377 GKFTPLKQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGC  456 (1013)
T ss_pred             cCccchhHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeecc
Confidence            999999999999999999975  788999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEc
Q 003729          239 GNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINA  318 (800)
Q Consensus       239 ~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a  318 (800)
                      |..|.|+|+|||.||.||||||||||+.|||++||++||+++..|||+++|+++..++++++|.+|+++||++.|+|++|
T Consensus       457 g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanA  536 (1013)
T KOG2012|consen  457 GNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANA  536 (1013)
T ss_pred             CCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCCCCccccCCCCCchhHHHHHHHHhhh
Q 003729          319 LDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG  398 (800)
Q Consensus       319 ~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~  398 (800)
                      +||++||+|++++|+.+.+||+++||+|++|++|+++|++||+|++++|||+|++|+||+++||+.|+|||+|||+.||+
T Consensus       537 LDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg  616 (1013)
T KOG2012|consen  537 LDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEG  616 (1013)
T ss_pred             hcchhhhhhhhhhhhhhccchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccChhHHhhhcCCchhHhhhhhhcCchhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhCCccc
Q 003729          399 LLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDA  478 (800)
Q Consensus       399 ~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~~A~~~f~~~F~~~I~~ll~~~p~d~  478 (800)
                      +|.+.++.+|+||++|..+...++..++.+..+.|+.+.+.|. .+|.+|+||++|||..|+++|+++|.|||++||+|.
T Consensus       617 ~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~  695 (1013)
T KOG2012|consen  617 LFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDA  695 (1013)
T ss_pred             HhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCccc
Confidence            9999999999999999988888888888999999999999997 999999999999999999999999999999999999


Q ss_pred             cccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHhhhcCCCCcCCCCCcccccc
Q 003729          479 ATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTD  558 (800)
Q Consensus       479 ~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  558 (800)
                      +|++|.|||+||||||+|++||.++++|+.||++||+|||.+|||+..   .++.++++++..+++|+|+|+++.+|.++
T Consensus       696 ~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~  772 (1013)
T KOG2012|consen  696 KTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVE  772 (1013)
T ss_pred             ccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeeccc
Confidence            999999999999999999999999999999999999999999999984   67889999999999999999999999999


Q ss_pred             cccccccccccccHHHHHHHHHHHHHhhhcCCCCCCcCCceecccCCCCchhHHHHHhhhhhhhccCCCCCCHHHHHHHh
Q 003729          559 EKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIA  638 (800)
Q Consensus       559 e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~FeKDDd~n~hidFV~AasNLRa~ny~I~~~~~~~~k~iA  638 (800)
                      +.+....+.+.++.+.+++|...+..+...  .++++.|+.||||||+|+|||||+|||||||.||+||++||+++|+||
T Consensus       773 ~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~--~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~Ia  850 (1013)
T KOG2012|consen  773 EAELAASSASVDDSAAIDQLNKALPSPSVL--PSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIA  850 (1013)
T ss_pred             ccccccccccCCchHHHHHHhhcccccccC--CCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheee
Confidence            998887777888888999999999887663  447899999999999999999999999999999999999999999999


Q ss_pred             CCccchhhhhHHHHHHHHHHHHHHHhhCCCCccccccccccccccccccCCCCCCccccc-CCCcceEEEEEEeCCCCCH
Q 003729          639 GRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKH-RDMSWTVWDRWILKDNPTL  717 (800)
Q Consensus       639 G~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~-~~~~~t~wd~~~v~~~~TL  717 (800)
                      |+||||||||||+|+||+|||+||++.|+.+++.|||+|+|||+|+|+++||.++++..+ .+.+||+||||++.+++||
T Consensus       851 GkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL  930 (1013)
T KOG2012|consen  851 GKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTL  930 (1013)
T ss_pred             eeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCH
Confidence            999999999999999999999999999988999999999999999999999999888776 4559999999999999999


Q ss_pred             HHHHHHHHHc-CCceeeeecCCceeecCCCcchhhcccCcHHHHHHhhhccCCCCceeEEEEEEEeecCCCCccccCeEE
Q 003729          718 RELIQWLKDK-GLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLIS  796 (800)
Q Consensus       718 ~~li~~~~~~-~l~~~~i~~g~~~lY~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~v~~P~v~  796 (800)
                      ++|+++++++ |++++||++|+++||++|||++++||+++++||++.++|+++|++++.|+|+++|+|+||+|+++|+||
T Consensus       931 ~~~L~~~~~~~gl~i~mls~G~~lly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v~ 1010 (1013)
T KOG2012|consen  931 REFLDHLEEQHGLEITMLSQGVSLLYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPVR 1010 (1013)
T ss_pred             HHHHHHHhhhcCceEEEEeccceeehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCceE
Confidence            9999999988 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEe
Q 003729          797 IYF  799 (800)
Q Consensus       797 ~~~  799 (800)
                      |+|
T Consensus      1011 y~f 1013 (1013)
T KOG2012|consen 1011 YYF 1013 (1013)
T ss_pred             EeC
Confidence            986

>TIGR01408 Ube1 ubiquitin-activating enzyme E1	Back alignment and domain information

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2	Back alignment and domain information

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2	Back alignment and domain information

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like	Back alignment and domain information

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3	Back alignment and domain information

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK08223 hypothetical protein; Validated	Back alignment and domain information

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E	Back alignment and domain information

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional	Back alignment and domain information

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA	Back alignment and domain information

>PRK07411 hypothetical protein; Validated	Back alignment and domain information

>PRK08328 hypothetical protein; Provisional	Back alignment and domain information

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated	Back alignment and domain information

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB	Back alignment and domain information

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1	Back alignment and domain information

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1	Back alignment and domain information

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated	Back alignment and domain information

>PRK05600 thiamine biosynthesis protein ThiF; Validated	Back alignment and domain information

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like	Back alignment and domain information

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional	Back alignment and domain information

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	Back alignment and domain information

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]	Back alignment and domain information

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated	Back alignment and domain information

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK14851 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein	Back alignment and domain information

>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised	Back alignment and domain information

>PRK14852 hypothetical protein; Provisional	Back alignment and domain information

>PRK15116 sulfur acceptor protein CsdL; Provisional	Back alignment and domain information

>PRK07877 hypothetical protein; Provisional	Back alignment and domain information

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E	Back alignment and domain information

>PRK08644 thiamine biosynthesis protein ThiF; Provisional	Back alignment and domain information

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP	Back alignment and domain information

>TIGR01408 Ube1 ubiquitin-activating enzyme E1	Back alignment and domain information

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p	Back alignment and domain information

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	Back alignment and domain information

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins	Back alignment and domain information

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family	Back alignment and domain information

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively	Back alignment and domain information

>cd01487 E1_ThiF_like E1_ThiF_like	Back alignment and domain information

>PTZ00245 ubiquitin activating enzyme; Provisional	Back alignment and domain information

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2	Back alignment and domain information

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK06153 hypothetical protein; Provisional	Back alignment and domain information

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1	Back alignment and domain information

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]	Back alignment and domain information

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]	Back alignment and domain information

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP	Back alignment and domain information

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein	Back alignment and domain information

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]	Back alignment and domain information

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1	Back alignment and domain information

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]	Back alignment and domain information

>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades	Back alignment and domain information

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2	Back alignment and domain information

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain	Back alignment and domain information

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	Back alignment and domain information

>PRK12549 shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases	Back alignment and domain information

>PRK06718 precorrin-2 dehydrogenase; Reviewed	Back alignment and domain information

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]	Back alignment and domain information

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B	Back alignment and domain information

>PRK06719 precorrin-2 dehydrogenase; Validated	Back alignment and domain information

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain	Back alignment and domain information

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase	Back alignment and domain information

>PRK05562 precorrin-2 dehydrogenase; Provisional	Back alignment and domain information

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK14027 quinate/shikimate dehydrogenase; Provisional	Back alignment and domain information

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type	Back alignment and domain information

>PRK12548 shikimate 5-dehydrogenase; Provisional	Back alignment and domain information

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B	Back alignment and domain information

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]	Back alignment and domain information

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	Back alignment and domain information

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1	Back alignment and domain information

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Back alignment and domain information

>PRK13940 glutamyl-tRNA reductase; Provisional	Back alignment and domain information

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1	Back alignment and domain information

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	Back alignment and domain information

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase	Back alignment and domain information

>PRK12749 quinate/shikimate dehydrogenase; Reviewed	Back alignment and domain information

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related	Back alignment and domain information

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]	Back alignment and domain information

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein	Back alignment and domain information

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]	Back alignment and domain information

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like	Back alignment and domain information

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2	Back alignment and domain information

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2	Back alignment and domain information

>PRK04148 hypothetical protein; Provisional	Back alignment and domain information

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]	Back alignment and domain information

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	Back alignment and domain information

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase	Back alignment and domain information

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []	Back alignment and domain information

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate	Back alignment and domain information

>PRK10637 cysG siroheme synthase; Provisional	Back alignment and domain information

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK00066 ldh L-lactate dehydrogenase; Reviewed	Back alignment and domain information

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases	Back alignment and domain information

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1	Back alignment and domain information

>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP	Back alignment and domain information

>PRK13403 ketol-acid reductoisomerase; Provisional	Back alignment and domain information

>PTZ00082 L-lactate dehydrogenase; Provisional	Back alignment and domain information

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases	Back alignment and domain information

>PRK06197 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK05854 short chain dehydrogenase; Provisional	Back alignment and domain information

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase	Back alignment and domain information

>PLN02602 lactate dehydrogenase	Back alignment and domain information

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated	Back alignment and domain information

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK07063 short chain dehydrogenase; Provisional	Back alignment and domain information

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase	Back alignment and domain information

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate	Back alignment and domain information

>PRK08410 2-hydroxyacid dehydrogenase; Provisional	Back alignment and domain information

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	Back alignment and domain information

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]	Back alignment and domain information

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional	Back alignment and domain information

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes	Back alignment and domain information

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional	Back alignment and domain information

>PRK00048 dihydrodipicolinate reductase; Provisional	Back alignment and domain information

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)	Back alignment and domain information

>PRK06487 glycerate dehydrogenase; Provisional	Back alignment and domain information

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1	Back alignment and domain information

>PRK13243 glyoxylate reductase; Reviewed	Back alignment and domain information

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional	Back alignment and domain information

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional	Back alignment and domain information

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins	Back alignment and domain information

>PRK07062 short chain dehydrogenase; Provisional	Back alignment and domain information

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain	Back alignment and domain information

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	Back alignment and domain information

>PRK09242 tropinone reductase; Provisional	Back alignment and domain information

>PRK06932 glycerate dehydrogenase; Provisional	Back alignment and domain information

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins	Back alignment and domain information

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated	Back alignment and domain information

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>PRK06436 glycerate dehydrogenase; Provisional	Back alignment and domain information

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed	Back alignment and domain information

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional	Back alignment and domain information

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3	Back alignment and domain information

>PRK08618 ornithine cyclodeaminase; Validated	Back alignment and domain information

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB	Back alignment and domain information

>PRK08251 short chain dehydrogenase; Provisional	Back alignment and domain information

>TIGR00507 aroE shikimate 5-dehydrogenase	Back alignment and domain information

>TIGR00465 ilvC ketol-acid reductoisomerase	Back alignment and domain information

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional	Back alignment and domain information

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase	Back alignment and domain information

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ	Back alignment and domain information

>PRK05708 2-dehydropantoate 2-reductase; Provisional	Back alignment and domain information

>PRK07831 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PLN02780 ketoreductase/ oxidoreductase	Back alignment and domain information

>PLN03139 formate dehydrogenase; Provisional	Back alignment and domain information

>PTZ00117 malate dehydrogenase; Provisional	Back alignment and domain information

>PLN02206 UDP-glucuronate decarboxylase	Back alignment and domain information

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]	Back alignment and domain information

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3	Back alignment and domain information

>PRK07576 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK07478 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK05867 short chain dehydrogenase; Provisional	Back alignment and domain information

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial	Back alignment and domain information

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed	Back alignment and domain information

>TIGR01035 hemA glutamyl-tRNA reductase	Back alignment and domain information

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed	Back alignment and domain information

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases	Back alignment and domain information

>PRK06523 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed	Back alignment and domain information

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)	Back alignment and domain information

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases	Back alignment and domain information

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	Back alignment and domain information

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B	Back alignment and domain information

>PRK06522 2-dehydropantoate 2-reductase; Reviewed	Back alignment and domain information

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>PRK13304 L-aspartate dehydrogenase; Reviewed	Back alignment and domain information

>PRK06249 2-dehydropantoate 2-reductase; Provisional	Back alignment and domain information

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional	Back alignment and domain information

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PRK06141 ornithine cyclodeaminase; Validated	Back alignment and domain information

>PLN02306 hydroxypyruvate reductase	Back alignment and domain information

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase	Back alignment and domain information

>PRK09186 flagellin modification protein A; Provisional	Back alignment and domain information

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	Back alignment and domain information

>PRK12367 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK14982 acyl-ACP reductase; Provisional	Back alignment and domain information

>PTZ00431 pyrroline carboxylate reductase; Provisional	Back alignment and domain information

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PLN02166 dTDP-glucose 4,6-dehydratase	Back alignment and domain information

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed	Back alignment and domain information

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating	Back alignment and domain information

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme	Back alignment and domain information

>PRK07067 sorbitol dehydrogenase; Provisional	Back alignment and domain information

>PRK00676 hemA glutamyl-tRNA reductase; Validated	Back alignment and domain information

>PRK12480 D-lactate dehydrogenase; Provisional	Back alignment and domain information

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit	Back alignment and domain information

>PLN02427 UDP-apiose/xylose synthase	Back alignment and domain information

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	Back alignment and domain information

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>PRK12550 shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	Back alignment and domain information

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional	Back alignment and domain information

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase	Back alignment and domain information

>TIGR02992 ectoine_eutC ectoine utilization protein EutC	Back alignment and domain information

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional	Back alignment and domain information

>PRK07814 short chain dehydrogenase; Provisional	Back alignment and domain information

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase	Back alignment and domain information

>PRK05875 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK07340 ornithine cyclodeaminase; Validated	Back alignment and domain information

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional	Back alignment and domain information

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed	Back alignment and domain information

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional	Back alignment and domain information

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase	Back alignment and domain information

>PRK06139 short chain dehydrogenase; Provisional	Back alignment and domain information

>PRK05866 short chain dehydrogenase; Provisional	Back alignment and domain information

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase	Back alignment and domain information

>PRK08328 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03466 HpnA hopanoid-associated sugar epimerase	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK08229 2-dehydropantoate 2-reductase; Provisional	Back alignment and domain information

>PRK12827 short chain dehydrogenase; Provisional	Back alignment and domain information

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB	Back alignment and domain information

>PRK08291 ectoine utilization protein EutC; Validated	Back alignment and domain information

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus	Back alignment and domain information

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase	Back alignment and domain information

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional	Back alignment and domain information

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]	Back alignment and domain information

>PRK08655 prephenate dehydrogenase; Provisional	Back alignment and domain information

>PRK06398 aldose dehydrogenase; Validated	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases	Back alignment and domain information

>PRK06720 hypothetical protein; Provisional	Back alignment and domain information

>PRK07856 short chain dehydrogenase; Provisional	Back alignment and domain information

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase	Back alignment and domain information

>PLN00203 glutamyl-tRNA reductase	Back alignment and domain information

>PRK07097 gluconate 5-dehydrogenase; Provisional	Back alignment and domain information

>PLN02928 oxidoreductase family protein	Back alignment and domain information

>PRK07102 short chain dehydrogenase; Provisional	Back alignment and domain information

>PLN00106 malate dehydrogenase	Back alignment and domain information

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated	Back alignment and domain information

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase	Back alignment and domain information

>PRK11259 solA N-methyltryptophan oxidase; Provisional	Back alignment and domain information

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated	Back alignment and domain information

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase	Back alignment and domain information

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways	Back alignment and domain information

>PRK07453 protochlorophyllide oxidoreductase; Validated	Back alignment and domain information

Homologous Structure Templates