Citrus Sinensis ID: 003796

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-----

MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPEHRFPMLDT

ccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccCEEEEccccccccHHHHHHHHHHHHcccccccCEEEEECccccEEEEEEEcccccHHHHHHHHHHccEEEEEEEccccccccccccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHccccccccccCEEEcccHHHHHHHHHHHHHccccccccccccccEEEEEEEEEcccccccccEEEEEEEEEcccccccccEEEccccccccccECccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccHHHHHHHHHccccccEEEEcccccccCEEEEEEEEEEcccccccccccccEEEEEEEEEEEEEEEEEcccccccccEEEcccccccEEEEEEEEEcccccccEEEEEccccccccEEEEEEEECccccccEEEEEEEEEcccEEEEEEEEEEEEccccHHHHHcccccEEECcccccEEEEcccccccEEEEEEccccccccEEEEEccEECcccccccccccccc

*****************************************************************************PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFP*******************VI*********LEPLLVENVPDPLAGEQTWPTEAEMAEADQNQK*******************WI**DS*********DADDGMVLD***********TNNSDIDDDQAS***************MME*********************************************************PKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPEHRFPMLD*

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MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMxxxxxxxxxxxxxxxxxxxxxHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPEHRFPMLDT

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Ribosome biogenesis protein tsr1 homolog	Required for 40S ribosomal subunit synthesis. Required for normal export of the pre-40S particles from the nucleus to the cytoplasm.	probable	O13956
Pre-rRNA-processing protein TSR1 homolog	Required during maturation of the 40S ribosomal subunit in the nucleolus.	probable	Q5SWD9
Pre-rRNA-processing protein TSR1 homolog	Required during maturation of the 40S ribosomal subunit in the nucleolus.	probable	Q9VP47

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WB1, chain A
Confidence level:confident
Coverage over the Query: 610-781
View the alignment between query and template
View the model in PyMOL

Template: 2DY1, chain A
Confidence level:confident
Coverage over the Query: 78-194
View the alignment between query and template
View the model in PyMOL

Template: 3AVX, chain A
Confidence level:probable
Coverage over the Query: 76-106,117-309
View the alignment between query and template
View the model in PyMOL