Citrus Sinensis ID: 003796

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-----
Protein Sequence
MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPEHRFPMLDT
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEEcccccHHHHHHHHHHccEEEEEEEccccccccccccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHHHHccccccccccccccEEEEEEEEEcccccccccEEEEEEEEEcccccccccEEEccccccccccEEcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccHHHHHHHHHccccccEEEEcccccccEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEEEEEEcccccccccEEEcccccccEEEEEEEEEcccccccEEEEEccccccccEEEEEEEEEccccccEEEEEEEEEcccEEEEEEEEEEEEccccHHHHHcccccEEEEcccccEEEEcccccccEEEEEEccccccccEEEEEccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHcccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHHHHHHccccccccccEEEEcccccEEEEEEEcccccHHHHHHHHHHccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHHccccccEEEcccHHHHHHHHHHHHHcccccccccccccEEEEEEEEEcccccccccEEEEEEEEEEcccccccEEEEEcccccEEEEEEcccccccccccccccccccccccccccEEEcccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccEccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHHccccHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccHHHHHHHHcccccccEEEEEcccccccEEEEEEEEEEcccccccccccccEEEEEccEEEEEEEEEEccccccccccEHHEcccccEEEEEEEEEcccccccEEEEEEccccccEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEEEEEEccHHHHHEEccEEEEcccccEEEEEcccccccEEEEEEcccccHccEEEHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mtgsrvqvnkshksrfstkssRNLHKTAAkdksrigksdcnvAKGAKAARVQRNKMLRDQKRLALLKEKrassgiaspprVIVLFGLSASVNLNSVREDLLRQLssegtgalsstvssskyrlrtsvlqaphgdlvgCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVfrslglpstaVLIRDLPTDLKKRKDLKKMCISsltsefpedckfYAADTKDELHKFLWLFKEqrltvphwrnqrpflmAQKVDVVaddcnsgkctLLLHGYLRAHCLSVNQlvhisgagdfqlgkieilkdpfplnarkesdamesdeihdlevirtlspdplklepllvenvpdplageqtwpteAEMAEADQNQKHRkqkkralprgtseyqaawivddsdeadsdsdndaddgmvldqedrgfpgyegtnnsdidddqaslnfryaddgtendsvmmeGEILTREQIEDEIKKIKEahaedeefpdevdtpldvparKRFAkyrglksfrtsswdpkeslppeyARIFAFDKFTRTQKHVFANALKMEqenmddsvpasLYVRLHIKEVPAGIAHRLCEMaerspliasgllqheskmSVLHFSvkkhdtydapiKAKEELIFHVGFrqfvarpifssdnmnsdkHKMERFLHAGCFSVAsiyapicfpplplivlksadggvaPAVAAVGslrsidpdrIILKKIVLTGYPQRVSKLKAIVRYMfhnpedvrwfkpvevwtkcgrrgrikepvgthgamkcvfngilQQRDTVCMSLYkraypkwpehrfpmldt
Flexible Loop (DISEMBL)
mtgsrvqvnkshksrfstkssrnlhktaakdksrigksdcnvakgakaarvqrnkmLRDQKRLALLKekrassgiaspprvIVLFGLSASVNLNSVREDLLRQlssegtgalsstvssskyrlRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRdlptdlkkrkdLKKMCissltsefpedCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQkhrkqkkralprgtseyqaaWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGtnnsdidddqaSLNFRyaddgtendsvmmeGEILTREQIEDEIKKIKeahaedeefpdevdtpldvparkrfakyrglksfrtsswdpkeslpPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAvgslrsidpdriilkkivltgypqrvSKLKAIVRYMFhnpedvrwfkpveVWTKCGrrgrikepvgthgamkcvFNGILQQRDTVCMSLYKraypkwpehrfpmldt
Low Complexity Region (SEG)
MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLvafvasassfseesMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVddsdeadsdsdndaddGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTReqiedeikkikeahaedeeFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSadggvapavaavgSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPEHRFPMLDT
Disordered region (IsUnstruct)
******************************************************************************PRVIVLFGLSASVNLNSVR************************RLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPF********************VI*************************************************************WI*******************************************************************************************************************************EYARIFAFDKFTRTQKHVFANALKM*******SVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSS********KMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWP*********
Disordered Region (DISOPRED)
*****************************************************************************PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRD****************SSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFP******************************LEPLLVENVPDPLAGEQTWPTEAEMAEADQNQK***********************DSDEADSDSDNDADDGMVLD***********TNNSDIDDDQAS***************MME*********************************************************PKESLPPEYARIFAFDKFTRT**H*******MEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPEHRFPMLD*
Disordered Region (DISEMBL)
***********************************GKSDC**********VQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQL****************YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAE********************GTSEYQAAWIVDDS*********DADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAH*********VDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPEHRFPMLDT
Disordered Region (DISPRO)
*********************************************AKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLN****************EVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDD*************************************************************EILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPEHRF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMxxxxxxxxxxxxxxxxxxxxxHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPEHRFPMLDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	795	2.2.26 [Sep-21-2011]
Q5SWD9	803	Pre-rRNA-processing prote	yes	no	0.913	0.904	0.396	1e-137
Q5XGY1	815	Pre-rRNA-processing prote	N/A	no	0.939	0.916	0.396	1e-137
Q5R434	805	Pre-rRNA-processing prote	yes	no	0.934	0.922	0.390	1e-135
Q2NL82	804	Pre-rRNA-processing prote	yes	no	0.939	0.929	0.386	1e-133
Q9VP47	814	Pre-rRNA-processing prote	yes	no	0.948	0.926	0.341	1e-114
Q19329	785	Pre-rRNA-processing prote	yes	no	0.876	0.887	0.328	1e-104
Q61WR2	788	Pre-rRNA-processing prote	N/A	no	0.866	0.874	0.328	1e-98
O13956	783	Ribosome biogenesis prote	yes	no	0.927	0.941	0.303	4e-83
Q54YA7	826	Pre-rRNA-processing prote	yes	no	0.377	0.363	0.463	5e-82
Q07381	788	Ribosome biogenesis prote	yes	no	0.898	0.906	0.275	8e-73

>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1

 Score =  489 bits (1258), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 311/784 (39%), Positives = 434/784 (55%), Gaps = 58/784 (7%)

Query: 27  TAAKD-KSRIG-KSDCNVAKGAKAARVQRNK--MLRDQKRLALLKEKRASSGIASPPRVI 82
           +A +D K R+G K  C   K   +   QR++   LR QKR ++L EKR       PP  +
Sbjct: 26  SAQRDSKGRVGPKILCKKLKRQLSRIDQRHRASQLRKQKRESVLAEKRQLGSKDGPPHQV 85

Query: 83  VLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQ-------APHGDL 135
           ++  L + ++L    +  L Q    GT  LS   S+  + L    L+       A  GDL
Sbjct: 86  LVVPLHSRISLPEAFK--LLQNEDLGTVYLSERGSTQSFMLLCPSLKHRWFFTYARPGDL 143

Query: 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT- 194
              ++MAKVAD + F+               DS G+ CLS   + GLP+  + ++ L   
Sbjct: 144 HTLLDMAKVADTILFLLDPLE--------GWDSTGDYCLSCLFAQGLPTYTLAVQGLSGF 195

Query: 195 DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLM 254
             KK+ D +K     +   FPED K    DT+ E    L     Q+     +R++R +L 
Sbjct: 196 PPKKQIDARKKLSKMVEKRFPED-KLLLLDTQQESGMLLRQLANQKQRHLAFRDRRAYLF 254

Query: 255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNAR 314
           A   D V  + +    TL + GY+R   L+VN L+HI G GDFQ+ +I+   DPFPLN R
Sbjct: 255 AHVADFVPSEESDLVGTLKISGYVRGRTLNVNSLLHIVGHGDFQMNQIDAPVDPFPLNPR 314

Query: 315 ------KESDAME-------SDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPT 361
                 K + AME        D   DL+V+  +  DP   E L  E +PDP+ GEQTWPT
Sbjct: 315 VIKSQKKPNMAMEVCVTDAAPDMEEDLKVL--MKADPDHQESLQTEAIPDPMEGEQTWPT 372

Query: 362 EAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRG 421
           E E+ EAD   K R +  + +P+GTS YQA WI+D+ DE+D +       G   D +  G
Sbjct: 373 EEELDEADDLLKQRSRVVKKVPKGTSSYQAEWILDEGDESDGEG------GEYDDIQHEG 426

Query: 422 FPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDE 481
           F   E  + S  ++++        +   ++    +  E +  E  E  ++K K+   E E
Sbjct: 427 FMEEESQDGSGEEEEEECETMTLGESVRDD----LYDEKVDAEDEERMLEKYKQERLE-E 481

Query: 482 EFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFA 541
            FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  F  T+K +F 
Sbjct: 482 MFPDEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFVNTRKRIFK 541

Query: 542 NALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLH 601
              + E E  +       YV LH+ +VP  +     + A   PLIA  LL +E KMSVL+
Sbjct: 542 EIEEKEAEGAE----VGWYVTLHVSDVPVSVVEYFRQGA---PLIAFSLLPYEQKMSVLN 594

Query: 602 FSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASI 661
             V ++     P+KAKEELIFH GFR+F A P+FS  +  +DKHK +RFL A    V ++
Sbjct: 595 MVVSRNPGNTEPVKAKEELIFHCGFRRFRASPLFSQ-HTAADKHKFQRFLTADAAFVVTV 653

Query: 662 YAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIV 721
           +API FPP  +++ K    G+  ++ A G L S+DPDR+++K++VL+G+P ++    A+V
Sbjct: 654 FAPITFPPASVLLFKQRRNGMH-SLIATGHLFSVDPDRMVIKRVVLSGHPFKIFTKMAVV 712

Query: 722 RYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRA 781
           RYMF N EDV WFKPVE+ TK GRRG IKEP+GTHG MKC F+G L+ +DTV M+LYKR 
Sbjct: 713 RYMFFNREDVMWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRV 772

Query: 782 YPKW 785
           +PKW
Sbjct: 773 FPKW 776

Required during maturation of the 40S ribosomal subunit in the nucleolus.
Mus musculus (taxid: 10090)

>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1

 Score =  488 bits (1257), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 322/812 (39%), Positives = 453/812 (55%), Gaps = 65/812 (8%)

Query: 3   GSRVQVNKSHKS-RFSTKSSR---NLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLR 58
           G+  Q NK HKS R   + ++   N  + AAK   +  K D       K  R  +   +R
Sbjct: 13  GAYKQQNKPHKSGRHRGRGAQDRENKGRVAAKILGKKNKKDLR-----KLDRRHKANQIR 67

Query: 59  DQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQL-SSEG--------- 108
            Q++ A+L EKR+      PP +++   L A     +V++DL   + ++EG         
Sbjct: 68  RQRKDAVLAEKRSLGTKDGPPHLVIAISLHA----RAVKDDLFSLVQNNEGDILHVNDQI 123

Query: 109 TGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDS 168
            G L+  +   K + R   +QA   DL   +++AKVAD + F+               DS
Sbjct: 124 KGLLA--LVCPKVKQRWCFIQANRDDLCSLLDLAKVADTLLFLLDPQEG--------WDS 173

Query: 169 FGNQCLSVFRSLGLPSTAVLIRDLP-TDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKD 227
           +G+ CLS   + GLPS  + ++ +    +KKR D+KK     + + F  D K +  DT+ 
Sbjct: 174 YGDYCLSCLFAQGLPSYVLAVQGMNYIPIKKRADIKKQLSKVIENRF-TDAKLFQLDTEQ 232

Query: 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQ 287
           E    +     Q+     +R++R +++AQ+ D    D +    TL L GY+R   L+VN+
Sbjct: 233 EAAVLIRQISTQKQRHLAFRSRRSYMLAQRADFQPTDESGLVGTLKLSGYVRGQELNVNR 292

Query: 288 LVHISGAGDFQLGKIEILKDPFPLNAR------KESDAME-SDEI-------HDLEVIRT 333
           LVHI G GDF + +I+   DP+PLN R      K    ME SDE         D++V+  
Sbjct: 293 LVHIVGHGDFHMSQIDAPPDPYPLNPRVHKPKTKSGQDMEMSDEPATGSEMEQDIKVL-- 350

Query: 334 LSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAW 393
           +  DP   E L  E VPDP+ GEQTWPTE E+ EA+   K   +  + +P+GTS YQAAW
Sbjct: 351 MKADPSAQESLQCEVVPDPMEGEQTWPTEEELKEAEDALKGTSKVVKKVPKGTSAYQAAW 410

Query: 394 IVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDS 453
           I+DD  + + +SD+D D+ M  D ED     Y    +   +++          D T +D 
Sbjct: 411 ILDDEGDGEEESDDDDDEDMEEDAEDAMDDAYSEEEDGSGNEEAEESETLTIPDSTRDDK 470

Query: 454 VMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSW 513
                +    EQ E+++ +  +   +DE FPDEVDTP D  AR RF KYRGLKSFRTS W
Sbjct: 471 Y----DENVDEQEEEQMLEKYKLQRQDEVFPDEVDTPRDQIARIRFQKYRGLKSFRTSPW 526

Query: 514 DPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIA 573
           D KE+LP +YARIF F  F RT+K VF      E+E  D+      YV +HI  VP  + 
Sbjct: 527 DVKENLPRDYARIFQFHDFFRTRKRVFK-----EEEEKDEGAMVGWYVTVHISAVPVSV- 580

Query: 574 HRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARP 633
             +       PL+   LL HE KMSV++  V++H   + PIKAKEELIFH GFR+F A P
Sbjct: 581 --MEHFKHGLPLVLCSLLPHEQKMSVMNMLVRRHPGNNEPIKAKEELIFHCGFRRFRASP 638

Query: 634 IFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLR 693
           +FS  + ++DKHK ERFL +    V ++YAPI FPP  ++V K    G+   VA  GSL 
Sbjct: 639 LFSQHS-SADKHKSERFLRSDTSVVVTVYAPITFPPASVLVFKQRYNGMQDLVAT-GSLL 696

Query: 694 SIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPV 753
           +++PDRI++K+IVL+G+P ++ K  A+VRYMF N EDV WFKPVE+ TK GRRG IKEP+
Sbjct: 697 NVNPDRIVIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPL 756

Query: 754 GTHGAMKCVFNGILQQRDTVCMSLYKRAYPKW 785
           GTHG MKC F+G L+ +DTV M+LYKR YPKW
Sbjct: 757 GTHGHMKCHFDGQLKSQDTVLMNLYKRVYPKW 788

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Xenopus laevis (taxid: 8355)

>sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1 PE=2 SV=1

 Score =  481 bits (1239), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 317/812 (39%), Positives = 456/812 (56%), Gaps = 69/812 (8%)

Query: 3   GSRVQVNKSHKSRFSTKSSRNLHKTAAK--DKSRIGKSDCNVAKGAKAARV---QRNKML 57
           G+  Q NK+HK        R+  + +A+   K R+     +     + +RV    R   L
Sbjct: 7   GTLKQQNKAHKG------GRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQL 60

Query: 58  RDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVS 117
           R QK+ A+L EKR   G   PP  +++  L + ++L    +  L Q    GT  L+   +
Sbjct: 61  RKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQ--LLQDRDTGTVHLNELGN 118

Query: 118 SSKYRL-------RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFG 170
           +  + L       R     A  GDL   ++MAKVAD + F+               DS G
Sbjct: 119 TQSFMLLCPRLKHRWFFTSARPGDLHIVLDMAKVADTILFLLDPLE--------GWDSTG 170

Query: 171 NQCLSVFRSLGLPSTAVLIRDLP-TDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDEL 229
           + CLS   + GLP+  + ++ +    LKK+ D +K    ++   FP D K    DT+ E 
Sbjct: 171 DYCLSCLFAQGLPTYTLAVQGISGLPLKKQIDARKKLSKAVEKRFPHD-KLLLLDTQQEA 229

Query: 230 HKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLV 289
              L     Q+     +R++R +L A+ VD VA + N+   TL + GY+R   L+VN+L+
Sbjct: 230 GMLLRQLANQKQQHLAFRDRRAYLFARAVDFVASEENNLVGTLKISGYVRGQTLNVNRLL 289

Query: 290 HISGAGDFQLGKIEILKDPFPLNAR-----KESD-AME---SDEIHDLE--VIRTLSPDP 338
           HI G GDFQ+ +I+   DPFPLN R     K+ D AME   +D + D+E  +   +  DP
Sbjct: 290 HIVGHGDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDTVDDMEEGLKVLMKADP 349

Query: 339 LKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDS 398
            + E L  E +PDP+ GEQTWPTE E++EA    K   +  + +P+GTS YQA WI+D  
Sbjct: 350 DRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGG 409

Query: 399 DEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEG 458
            ++  + D    D M  + ED      +  ++ + +++  ++        T  +SV    
Sbjct: 410 SQSGGEGDEYEYDDM--EHEDFMEEESQDESSEEEEEEYETM--------TIGESVH--- 456

Query: 459 EILTREQIEDE-----IKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSW 513
           + L  ++I++E     ++K K+   E E FPDEVDTP DV AR RF KYRGLKSFRTS W
Sbjct: 457 DDLYDKKIDEEAEAKMLEKYKQERLE-EMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPW 515

Query: 514 DPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIA 573
           DPKE+LP +YARIF F  FT T+K +F    + E E  +       YV LH+ E    ++
Sbjct: 516 DPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAE----VGCYVTLHVSE--VPVS 569

Query: 574 HRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARP 633
              C   + +PLIA  LL HE KMSVL+  V++      P+KAKEELIFH GFR+F A P
Sbjct: 570 VVEC-FRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASP 628

Query: 634 IFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLR 693
           +FS  +  +DKHK++RFL A    VA++YAPI FPP  +++ K    G+  ++ A G L 
Sbjct: 629 LFSQ-HTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMH-SLIATGHLM 686

Query: 694 SIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPV 753
           S+DPDR+++K++VL+G+P ++    A+VRYMF N EDV WFKPVE+ TK GRRG IKEP+
Sbjct: 687 SVDPDRMVIKRVVLSGHPLKMFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPL 746

Query: 754 GTHGAMKCVFNGILQQRDTVCMSLYKRAYPKW 785
           GTHG MKC FNG L+ +DTV M+LYKR +PKW
Sbjct: 747 GTHGHMKCSFNGKLKSQDTVLMNLYKRVFPKW 778

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Pongo abelii (taxid: 9601)

>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1

 Score =  478 bits (1229), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 312/807 (38%), Positives = 443/807 (54%), Gaps = 60/807 (7%)

Query: 3   GSRVQVNKSHKSRFSTKSSRNLHKTAAK--DKSRIGKSDCNVAKGAKAARV---QRNKML 57
           G   Q NK+HK        R+  + +A+   K R+     +     + +RV    R   L
Sbjct: 7   GPLKQQNKAHKG------GRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQL 60

Query: 58  RDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVS 117
           R QK+ A+L EKR   G   PP  +++  L + ++L    +  L Q    GT  L+   +
Sbjct: 61  RKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQ--LLQDRDTGTVHLNELGN 118

Query: 118 SSKYRL-------RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFG 170
           +  + L       R     A  GDL   ++MAKVAD + F+               DS G
Sbjct: 119 TQNFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLE--------GWDSTG 170

Query: 171 NQCLSVFRSLGLPSTAVLIRDLP-TDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDEL 229
           + CLS   + GLP+  + ++ +    LKK+ D +K    ++   FP D K    DT+ E 
Sbjct: 171 DYCLSCLFAQGLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHD-KLLLLDTQQEA 229

Query: 230 HKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLV 289
              L     Q+     +R++R +L A  VD V  + N+   TL + GY+R   L+VN+L+
Sbjct: 230 GMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLL 289

Query: 290 HISGAGDFQLGKIEILKDPFPLNAR-----KESD-AME---SDEIHDLE--VIRTLSPDP 338
           HI G GDFQ+ +I+   DPFPLN R     K+ D AME   +D + D+E  +   +  DP
Sbjct: 290 HIVGYGDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADP 349

Query: 339 LKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDS 398
            + E L  E +PDP+ GEQTWPTE E++EA    K   +  + +P+GTS YQA WI+D  
Sbjct: 350 GRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGG 409

Query: 399 DEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEG 458
            ++  + D    D M  + ED      +  ++ + ++ +         D   +  V  E 
Sbjct: 410 SQSGGEGDEYEYDDM--EHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEA 467

Query: 459 EILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKES 518
           E    E+ + E          +E FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+
Sbjct: 468 EAKMLEKYKQE--------RLEEMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKEN 519

Query: 519 LPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCE 578
           LP +YARIF F  FT T+K +F    + E E  +       YV LH+ E    ++   C 
Sbjct: 520 LPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAE----VGWYVTLHVSE--VPVSVVEC- 572

Query: 579 MAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSD 638
             + +PLIA  LL HE KMSVL+  V++      P+KAKEELIFH GFR+F A P+FS  
Sbjct: 573 FRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFSQ- 631

Query: 639 NMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPD 698
           +  +DKHK++RFL A    VA++YAPI FPP  +++ K    G+  ++ A G L S+DPD
Sbjct: 632 HTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMH-SLIATGHLMSVDPD 690

Query: 699 RIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGA 758
           R+++K++VL+G+P ++    A+VRYMF N EDV WFKPVE+ TK GRRG IKEP+GTHG 
Sbjct: 691 RMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGTHGH 750

Query: 759 MKCVFNGILQQRDTVCMSLYKRAYPKW 785
           MKC F+G L+ +DTV M+LYKR +PKW
Sbjct: 751 MKCSFDGKLKSQDTVLMNLYKRVFPKW 777

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Homo sapiens (taxid: 9606)

>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1

 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 274/803 (34%), Positives = 419/803 (52%), Gaps = 49/803 (6%)

Query: 3   GSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIG-KSDCNVAKGAKAARVQRNKM--LRD 59
           G   Q NK+HK    T   R+        K +IG +   +  K  +    +RN+M  LR 
Sbjct: 10  GPLKQANKAHK----TGRHRSKGAIDNAQKGKIGLRPISHKHKQQQRKEQRRNQMNQLRK 65

Query: 60  QKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLR---QLSSEGTGALSSTV 116
            KR  +L++KR   G  + P ++ L  +   ++  S  E L     +L  E + +    +
Sbjct: 66  NKREEVLEQKRKLGGQNTAPFLVCLLPMHEQIDPMSALEILKSCDSELVVENSPSGIVYI 125

Query: 117 SSSKYRLRTSVLQAP--HGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCL 174
           +  +++ R + +  P   G+ +  ++  KV D    + +A+ F ++ +    D +G +  
Sbjct: 126 NLPRFKQRFAFVTPPVGRGNELIALDYLKVCDTTLLLTTAA-FGDDEI---FDRWGQRIF 181

Query: 175 SVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLW 234
           ++  + G+P+  V + DL +   KR+   K     + S+   + K    DT  E    + 
Sbjct: 182 NMMSAQGIPTPVVALMDLESINPKRRPAAKQAAQKVISKLLPEEKIMQLDTASEALNVMR 241

Query: 235 LFKEQRLTVPHWRNQRPFLMAQKVDVV-ADDCNSGKCTLLLHGYLRAHCLSVNQLVHISG 293
               Q+  + H    RP L    V+     D +    TL + G+LR   L+VN LVHI G
Sbjct: 242 RIGGQKKRILHNVANRPHLFGDVVEFKPGSDPSDDLGTLEVTGFLRGQSLNVNGLVHIPG 301

Query: 294 AGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPL 353
            GDFQL ++    DP+ L+  ++    E+ E+  L+       DP K   L  EN+PDP+
Sbjct: 302 LGDFQLSQVVAPPDPYKLDKSRDG---ENSEVRLLD-----RSDPSKRTSLQSENIPDPM 353

Query: 354 AGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSD-EADSDSDNDADDG 412
             EQTWPTE E+A +    K  K  KR +P+G SEYQAAWI D  + E     D+D    
Sbjct: 354 DAEQTWPTEDEIAASQAETKKMKLVKR-VPKGYSEYQAAWIPDVEEVEDPDGKDDDDMSE 412

Query: 413 MVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDE--- 469
              D ++     +   +N   +D+      R +D     D+V +  E    ++  D+   
Sbjct: 413 DDDDDKEDDNEDFMSCDNKSFEDEYEK---RDSDTEEFQDTVSVASEAAINDEKYDQQMD 469

Query: 470 -------IKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPE 522
                  +KK+++A   D+ +PDE+DTPLDVPAR+RF KYRGL+SFRTS WD KE+LP +
Sbjct: 470 FQEERETLKKLQQART-DQLWPDEIDTPLDVPARERFQKYRGLESFRTSPWDAKENLPAD 528

Query: 523 YARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAER 582
           YARI+ F  F RT++ +   A + E       V   LYV L++  VP    +        
Sbjct: 529 YARIYQFQNFDRTKRRILNEAKEFE------GVLPGLYVTLYVINVPESRWNAFKSAQLM 582

Query: 583 SPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNS 642
             +I  G+L HE +M V++  +++    + P+K+KE+LI   G+R+FV  PI+S  + N 
Sbjct: 583 DNIIVYGMLPHEHQMCVMNVVLQRMPDSEVPLKSKEQLIIQCGYRRFVVNPIYSQ-HTNG 641

Query: 643 DKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIIL 702
           DKHK ER+        A+ YAPI FPP P++  K  +     A+ A G L S +PDRI+L
Sbjct: 642 DKHKFERYFRPYETVCATFYAPIQFPPAPVLAFK-VNPDSTLALVARGRLLSCNPDRIVL 700

Query: 703 KKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCV 762
           K++VL+G+P R+++  A +RYMF   EDV +FKPV++ TKCGR G IKE +GTHG MKC 
Sbjct: 701 KRVVLSGHPMRINRKSASIRYMFFYKEDVEYFKPVKLRTKCGRLGHIKESLGTHGHMKCY 760

Query: 763 FNGILQQRDTVCMSLYKRAYPKW 785
           F+G L+  DT  M LYKR +PKW
Sbjct: 761 FDGQLRSYDTAFMYLYKRVFPKW 783

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Drosophila melanogaster (taxid: 7227)

>sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans GN=tag-151 PE=3 SV=1

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 256/780 (32%), Positives = 411/780 (52%), Gaps = 83/780 (10%)

Query: 18  TKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIAS 77
           T+S+ + H+T +KD                 AR  + KM RDQK    ++ +R S+   +
Sbjct: 44  TRSAHSTHRTISKD-----------------ARRNQLKMARDQKMADAMERRRTSN---A 83

Query: 78  PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSS------KYRLRTSVLQAP 131
           P  V V+     S+ + +   + +++L++     + +T  S+      +++ R S L   
Sbjct: 84  PCLVTVV-----SLGVGARPTEFIKKLATCDETIIQTTSPSTIDFAIPRFKSRVSFLTPD 138

Query: 132 HGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRD 191
             ++ G ++  + +D++ F+          MS  +  +  Q L++ ++ GLP+   ++  
Sbjct: 139 KDNVDGVLDAIRASDVLCFLWP--------MSAELSEWDEQLLTIIKANGLPTIVSVVPG 190

Query: 192 LPT--DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQ 249
           L +  + KK++D++K     ++     +     AD+  +  + L +  E +      + +
Sbjct: 191 LGSIANHKKKEDVRKGIEFIISKWSMSNAGVMPADSVTDNLQLLRILNETKKKPLTLQAR 250

Query: 250 RPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPF 309
             +++ + ++    D     CTL+  GYLR    + N LVH+ G GDFQ+ KIE   DP 
Sbjct: 251 HSYMLVENLE--CSDKTGETCTLVAQGYLRGPEWNANNLVHLPGFGDFQISKIESTVDPH 308

Query: 310 PLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEAD 369
           PL A  ++   +         I   S D  K +    E  PD + GEQTWPT  E+ EAD
Sbjct: 309 PLKAHNKTPEAQ---------IIAKSDD--KRQNTETEITPDSMDGEQTWPTREELEEAD 357

Query: 370 QNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTN 429
           +       + R +P+GTS YQAAWI+DD D+ D +  ++  D    ++ +      E  +
Sbjct: 358 K-------ELRRVPKGTSSYQAAWILDDEDDEDEEDSDEDMDDSDNEEVEDDSEEEEPMD 410

Query: 430 NSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDT 489
           +   +  + + +    DDG + D  M E E   +E+             E+ ++PDEVDT
Sbjct: 411 DLKSEAGETTASEMMFDDGIDEDINMAEVEKYRKER-------------ENAQWPDEVDT 457

Query: 490 PLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFA--NALKME 547
           P+D+PAR  F KYRGLKSFRTS+WDPKE+LP +YARIF F  +  T+K+V +      ++
Sbjct: 458 PMDMPARIAFQKYRGLKSFRTSTWDPKENLPLDYARIFQFANYRNTKKNVMSKIGGNDVD 517

Query: 548 QENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKH 607
            +++ D      +  + I+ VP  +   L    +   L+   LL HE KMSVL+  +KKH
Sbjct: 518 ADSVADKKFNGAFASVFIENVPVAV---LEAYKDAKNLVLFQLLPHEHKMSVLNMVLKKH 574

Query: 608 DTYDAPIKA--KEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPI 665
            +   PI +   ++ IF+VGFRQF A  +FSS N   DK K+ERF+      VA++YAPI
Sbjct: 575 PSCTIPITSDQNQKFIFYVGFRQFEANAVFSS-NTPGDKFKLERFMPTEKTFVATVYAPI 633

Query: 666 CFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMF 725
            F P  ++  +  D G    VA  GS+   +PDRI+LK+ VL G+P ++++   +VRYMF
Sbjct: 634 TFNPATVLCFRQDDKGRQELVA-TGSILDSNPDRIVLKRTVLAGHPYKINRRAVVVRYMF 692

Query: 726 HNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKW 785
            N ED+ WFKPVE++T  GRRG IKE VGTHG MKC F+  L  +D+V ++LYKR +P W
Sbjct: 693 FNREDIEWFKPVELYTPSGRRGHIKEAVGTHGNMKCRFDQQLNAQDSVMLNLYKRVFPVW 752

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Caenorhabditis elegans (taxid: 6239)

>sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae GN=tag-151 PE=3 SV=1

 Score =  361 bits (927), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 247/752 (32%), Positives = 397/752 (52%), Gaps = 63/752 (8%)

Query: 46  AKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLS 105
           +K AR  + KM RD+K    ++ +R S+   +P  V +L     S+ + +   + L++L+
Sbjct: 55  SKDARRNQLKMARDRKMADAMERRRTSN---APCLVTIL-----SLGVGARPSEFLKKLA 106

Query: 106 SEGTGALSSTVSSS------KYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSE 159
           +     + +   S+      +++ R S L     ++   ++  + +D++ F+        
Sbjct: 107 TCDETIVQTHSPSTIDFAIPRFKSRISFLTPDKENVDSVLDAIRASDVLCFLWP------ 160

Query: 160 ESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP--TDLKKRKDLKKMCISSLTSEFPED 217
             +S  +  +  Q L++ ++ GLP+   ++  L    + KK++D++K    +++     +
Sbjct: 161 --LSAELSEWDEQLLTICKAAGLPTIVSVVPGLGGIQNHKKKEDVRKGIEFTISKWSMSN 218

Query: 218 CKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY 277
                AD+  +  + L    E +      + +  +++ + ++      +S K TL   GY
Sbjct: 219 AGVMPADSVTDNLQLLRTLNETKKKPLTLQARHSYMLVENLEATESPEDSSKITLKAQGY 278

Query: 278 LRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPD 337
           LR    + N L+H+ G GDFQ+ KIE   DP PL       A         EVI      
Sbjct: 279 LRGPEWNANNLIHLPGFGDFQISKIETAADPHPLKTSPPKGA---------EVIAKADE- 328

Query: 338 PLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDD 397
             K + L  E   D + GEQTWPT+ E+ EAD+         R +P+GTS YQAAWI+DD
Sbjct: 329 --KRQSLETEITLDAMDGEQTWPTQEELEEADKEM-------RRVPKGTSSYQAAWILDD 379

Query: 398 SDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMME 457
           S++ + + D D D     + +D      E     D+           ++ G    S MM 
Sbjct: 380 SEDDEDEEDEDEDMDDEEEDKDLEEDDEEEDTPMDLK----------SEAGETTASEMMF 429

Query: 458 GEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE 517
            + +  +    E++K ++   E+ ++PDEVDTP+D PAR RF KYRGLKSFRTS+WD KE
Sbjct: 430 HDEIDEDINLAEVEKYRKER-ENAQWPDEVDTPIDQPARIRFQKYRGLKSFRTSTWDAKE 488

Query: 518 SLPPEYARIFAFDKFTRTQKHVFANALKMEQENMD---DSVPASLYVRLHIKEVPAGIAH 574
           +LP +YARIF F  +  T+K+V +     + +  D   D     ++  ++I+ VP  +  
Sbjct: 489 NLPVDYARIFQFANYKNTKKNVMSKIGGNDVDAGDAVIDKKFNGVFASVYIENVPVSV-- 546

Query: 575 RLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEE-LIFHVGFRQFVARP 633
            +    E   L+   LL HE KMS+L+  +KKH +   PI ++++  IF+VGFRQF A  
Sbjct: 547 -MEAYKETKNLVLFQLLPHEQKMSILNMVLKKHPSCTVPIGSEDQKFIFYVGFRQFEAHA 605

Query: 634 IFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLR 693
           + SS N   DK K+ERF+      VA++YAPI F P  ++  +  D G    VA  GS+ 
Sbjct: 606 VLSS-NTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDDKGRQELVA-TGSVL 663

Query: 694 SIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPV 753
             +PDRI+LK+ VL+G+P ++++   +VRYMF N ED+ WFKPVE++T  GRRG IKE V
Sbjct: 664 DTNPDRIVLKRTVLSGHPYKINRRAVVVRYMFFNREDIDWFKPVELYTPSGRRGHIKEAV 723

Query: 754 GTHGAMKCVFNGILQQRDTVCMSLYKRAYPKW 785
           GTHG MKC F+  L  +D+V ++LYKR +P W
Sbjct: 724 GTHGHMKCRFDQQLNAQDSVMLNLYKRVFPVW 755

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Caenorhabditis briggsae (taxid: 6238)

>sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1

 Score =  310 bits (793), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 245/807 (30%), Positives = 402/807 (49%), Gaps = 70/807 (8%)

Query: 4   SRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRL 63
           S  +  K  KS+ ++KSS         +  R G  +  V    KA R    K ++  KR 
Sbjct: 7   STFKAKKPFKSKHASKSSLKEKYKNEVEPHRSGPKNI-VHTSTKADRRNTAKQIQLNKRT 65

Query: 64  ALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT----GALSSTVSSS 119
            +    R   G    P+VI +  L  +V+  +V  +LLR +  E +       S + S++
Sbjct: 66  EVAMNNRIFGGKNGAPKVITIVPLCNNVDSWNVLTNLLRSIDPEASLPKFDKDSISYSTT 125

Query: 120 KYRLRTSVL-QAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR 178
             R + ++L   P  +    ++  KV+D V FV SA           +D FG   +   +
Sbjct: 126 IDRFKQNLLFLLPKREFYSLIDACKVSDYVIFVLSAVQ--------EVDEFGELIVRTTQ 177

Query: 179 SLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLTSEFPEDCKFYAAD-TKDELHKFLWL 235
             G+ S   ++ DL     LK R ++KK   S +   F +  + +AAD ++D L+    L
Sbjct: 178 GQGISSVLSMVHDLSEVDSLKTRNEVKKSLQSFMNFFFSDQERVFAADVSQDALNVMRAL 237

Query: 236 FKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG 295
                  + HWR+ R +L++Q++       +     LL+ G +R   L  N+L+HI G G
Sbjct: 238 CTSHPRGI-HWRDSRSYLLSQEI-------SYSNGNLLVRGIVRGKGLDPNRLIHIQGFG 289

Query: 296 DFQLGKIEILKDPFPLNARKESDAMESDEIHDLE--VIRTLSPDPLK--LEPLLVENVPD 351
           DF + +I   + P      + S  +  DE  +L   ++   SP   +  LE L       
Sbjct: 290 DFAINRI--YEAP---QGIQNSRGISMDEDTNLTGGLVELCSPTQEQDSLESLGPIIDDM 344

Query: 352 PLAGEQTWPTEA-------EMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSD 404
               +     EA       +    D  ++     KR +P+GTS YQA WI D+ +E+D  
Sbjct: 345 DTDMDSEVGKEASRGVRLDDFYYFDDEEEPVAVAKR-VPKGTSTYQATWIPDEDEESDQY 403

Query: 405 SDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTRE 464
           SD +  + ++ DQ+++    +      D D+++        DD      + ++       
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEET------IDDA--KSEMFVDLSEEEEV 455

Query: 465 QIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPP 521
           +  +E +K ++   E+ EFPDEV+   +  AR+RF KYRGL+S  TS WD  E   + P 
Sbjct: 456 RQYEEYRKKQKELQEELEFPDEVELQPNELARERFKKYRGLRSLYTSQWDADEYDPNEPR 515

Query: 522 EYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPA-SLYVRLHIKEVPAGIAHRLCEMA 580
           E+ ++F F+ + R  K+ F     ++Q  + ++ P  ++YV L  + VP  I     +  
Sbjct: 516 EWRQLFKFENY-RNLKNKF-----LKQPFIGEAKPGKAVYVEL--RNVPIEIFEYYNK-- 565

Query: 581 ERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFS---S 637
             + L+   LLQ+E+K++V  F+  +H  Y+ PI++KEEL+  +G R+F+ RP++S   +
Sbjct: 566 PWNLLVLYSLLQYENKLTVSQFTAMQHSEYEEPIESKEELLLQIGPRRFMVRPLYSDPTA 625

Query: 638 DNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLK-SADGGVAPAVAAVGSLRSID 696
              +++  K  R+L      +AS+ +PI F  +P+I+ K S+D  +   +AA GS  + D
Sbjct: 626 SGASNNLQKYHRYLPPKQAVIASVISPIVFGNVPIIMFKKSSDNSLR--LAATGSYVNCD 683

Query: 697 PDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTH 756
            + +I K+ VLTG+P +V K    +RYMF NPEDV WFKP++++TK GR G IKEP+GTH
Sbjct: 684 TNSVIAKRAVLTGHPFKVHKKLVTIRYMFFNPEDVIWFKPIQLFTKQGRTGYIKEPLGTH 743

Query: 757 GAMKCVFNGILQQRDTVCMSLYKRAYP 783
           G  K  FNG +  +DTV MSLYKR YP
Sbjct: 744 GYFKATFNGKITVQDTVAMSLYKRMYP 770

Required for 40S ribosomal subunit synthesis. Required for normal export of the pre-40S particles from the nucleus to the cytoplasm.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54YA7|TSR1_DICDI Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium discoideum GN=tsr1 PE=3 SV=1

 Score =  306 bits (783), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 146/315 (46%), Positives = 208/315 (66%), Gaps = 15/315 (4%)

Query: 474 KEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFT 533
           K+   ++  +PDEVDTP +VP+R RF+K+RGLKSFR+S WD KE+LP +YA+IF F  F 
Sbjct: 513 KQLQQDEILYPDEVDTPGNVPSRIRFSKFRGLKSFRSSPWDVKENLPIDYAKIFQFHSFN 572

Query: 534 RTQKHVFANALKMEQENMDDSVPAS--LYVRLHIKEVPAGIAHRLCEMAERSPLIASGLL 591
           ++ +   A         + D+ PA   +YVR+H+   P  +  R        P +A GL 
Sbjct: 573 QSMRASIA---------ILDNAPAKPDMYVRIHLVNGPKQLVERNTTAITTKPEVAVGLY 623

Query: 592 QHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFL 651
           ++E+K+S+LHFSV+KH +Y+  +++KEE+ FH G+R+F   PI+S  + N DK K E+FL
Sbjct: 624 RYENKISLLHFSVEKHKSYEETVRSKEEVYFHFGWRKFSTSPIYSISSPNCDKQKFEKFL 683

Query: 652 HAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTG-Y 710
                ++A+IY PI +PP PL++    D      + A G L S++PDRII K+I+LTG  
Sbjct: 684 LPARNTMATIYGPITYPPAPLLIFNGKDCN---ELVATGYLSSVNPDRIICKRIILTGVI 740

Query: 711 PQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQR 770
            + +SK    V+ MF+ PED+ WFK VE++TK GR G IKEP+GTHG MKC F+G + Q+
Sbjct: 741 AKSISKKFVTVKDMFYYPEDINWFKKVELYTKMGRVGHIKEPLGTHGRMKCQFDGTMNQQ 800

Query: 771 DTVCMSLYKRAYPKW 785
           DTVCM+LYKR YPKW
Sbjct: 801 DTVCMNLYKRVYPKW 815

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Dictyostelium discoideum (taxid: 44689)

>sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1

 Score =  275 bits (704), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 228/827 (27%), Positives = 368/827 (44%), Gaps = 113/827 (13%)

Query: 9   NKSHKSRFSTKSS-RNLHK-TAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALL 66
           +KS+KS+ ++K + + L+K    K+    GK D  V+K     R  + K LR Q+ L  +
Sbjct: 14  HKSYKSKHASKGALKRLYKGKVEKEPVGTGKPDKQVSK---LQRKNKAKQLRAQRILDSI 70

Query: 67  KEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSS------TVSSSK 120
           + ++   G     ++I +  L   ++   +   LL+    EG             V   K
Sbjct: 71  ENRKLFEGKNGAAKIITIVPLVNDLDPLDILYKLLKCADDEGIMVQEVDSKRIFNVHIKK 130

Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
           ++    ++     + +  ++ AKVAD V F  S     +E        FG Q +      
Sbjct: 131 FKSNLKIIIPDMTNFLNILDCAKVADFVVFGLSGVQEVDEE-------FGEQIIRALELQ 183

Query: 181 GLPSTAVLIRDLPTDLKKRK---DLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFK 237
           G+ S   +I +L    +K K   D+K+   S     FP + + Y  +   +    L    
Sbjct: 184 GIASYIGVISNLSAVHEKEKFQLDVKQSLESYFKHFFPSEERVYNLEKNSDALNVLRTLC 243

Query: 238 EQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDF 297
           ++     +WR+ R +++A  VD V    +SG   L++ G +R    + N+LVHI   GDF
Sbjct: 244 QRLPRSINWRDNRGYVVADFVDFVETSPDSG--DLVIEGTVRGIGFNANRLVHIPDFGDF 301

Query: 298 QLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLE-------------PL 344
           QL KIE +                S+     ++I+  + D L LE               
Sbjct: 302 QLNKIEKI----------------SESSQKRKIIKEKATDSLSLELDLQTVFESNMNRDT 345

Query: 345 LVENVPDPLAGEQTWPTEAEMAEADQNQKHR------------KQKKRALPRGTSEYQAA 392
           L E  P+   G + W    E  E D     R              KK A+P+GTS+YQA 
Sbjct: 346 LDEYAPE---GTEDWSDYDEDFEYDGLTTARYDDHGFLPGREQTSKKAAVPKGTSDYQAK 402

Query: 393 WIVDD----SDEADSDSDN-------DADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLN 441
           W +DD    ++E +++  N       + DD M+++Q++    G E     DI+D      
Sbjct: 403 WYLDDVIDANEEEEAEQTNGKDETMMEIDDEMMVEQDNEEVAGDE---EYDIED------ 453

Query: 442 FRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAK 501
                    N+            Q+    ++ ++   ED EFPDE++      A +R  +
Sbjct: 454 ---------NEGFEELSPEEEERQL----REFRDMEKEDREFPDEIELEPSESAIERLKR 500

Query: 502 YRGLKSFRTSSWDPKE---SLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPAS 558
           YRGLK+     W   E   S P E+ R+     +  T+  +        Q    D +   
Sbjct: 501 YRGLKNLYNCDWQVDEKDPSSPAEWKRLLRIGNYKNTKNRIIKETKNEAQAIAGDRI--R 558

Query: 559 LYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKE 618
           +++R      P  +  ++ +  ++      GLL HE K +V++FS+++ + YD P+ ++E
Sbjct: 559 MFIRF-----PKFLLEKIQD-PKQLLFAVYGLLLHEHKNAVVNFSLQRWEQYDKPVPSQE 612

Query: 619 ELIFHVGFRQFVARPIFS-SDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLK- 676
            ++   G R++  +P+FS   N  ++ HK ERFLH    SVA+  AP+ F   P I  K 
Sbjct: 613 PIVVQYGVRRYTIQPLFSQGSNSPNNVHKYERFLHPDTVSVATCIAPVDFTQSPAIFFKP 672

Query: 677 SADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKP 736
           S        +   G+  + D  RI+ K+ +LTG+P R  K    VRYMF  PEDV WFK 
Sbjct: 673 SPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTVRYMFFRPEDVEWFKS 732

Query: 737 VEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYP 783
           + ++TK GR G IKE +GTHG  K  F+G L  +D V MSLYKR +P
Sbjct: 733 IPLFTKSGRSGFIKESLGTHGYFKATFDGKLSAQDVVAMSLYKRMWP 779

Required for 40S ribosomal subunit synthesis. Required for normal export of the pre-40S particles from the nucleus to the cytoplasm.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	795
255539194	792	ribosome biogenesis protein tsr1, putati	0.994	0.998	0.773	0.0
224086026	798	predicted protein [Populus trichocarpa]	1.0	0.996	0.770	0.0
225457538	801	PREDICTED: pre-rRNA-processing protein T	0.997	0.990	0.767	0.0
18400634	793	uncharacterized protein [Arabidopsis tha	0.994	0.997	0.705	0.0
297841055	792	hypothetical protein ARALYDRAFT_894100 [	0.993	0.997	0.704	0.0
356508752	792	PREDICTED: pre-rRNA-processing protein T	0.993	0.997	0.720	0.0
297852102	799	hypothetical protein ARALYDRAFT_473739 [	0.978	0.973	0.680	0.0
449487337	795	PREDICTED: LOW QUALITY PROTEIN: pre-rRNA	0.982	0.982	0.687	0.0
449445642	795	PREDICTED: pre-rRNA-processing protein T	0.982	0.982	0.687	0.0
356517386	792	PREDICTED: pre-rRNA-processing protein T	0.993	0.997	0.708	0.0

>gi|255539194|ref|XP_002510662.1| ribosome biogenesis protein tsr1, putative [Ricinus communis] gi|223551363|gb|EEF52849.1| ribosome biogenesis protein tsr1, putative [Ricinus communis]

 Score = 1280 bits (3311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/794 (77%), Positives = 701/794 (88%), Gaps = 3/794 (0%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
           M GSR QVNK+HKSRFS+KS+RNLHKT+ +DK+RI KS+ N AKGA+A R+QRNKMLR+Q
Sbjct: 1   MGGSRAQVNKAHKSRFSSKSTRNLHKTSLRDKNRIAKSERNAAKGARAVRIQRNKMLREQ 60

Query: 61  KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
           KR ALLKEKRAS G +SPPRVIVLFGLSASVN++S+ EDLL+ LS EG  A+SSTV+SS+
Sbjct: 61  KRAALLKEKRASGGSSSPPRVIVLFGLSASVNIDSLAEDLLQLLSPEGGAAVSSTVASSE 120

Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
           Y++R +VL+APHGDL+ CMEMAKVADL+AFVASAS   EES S YIDSFG+QCLSVFRSL
Sbjct: 121 YKMRATVLKAPHGDLLSCMEMAKVADLIAFVASAS---EESASDYIDSFGSQCLSVFRSL 177

Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
           GLPSTAV IRDLPTDLK++ DLKKM  S+L SEFPEDCKFY ADTKDELHKFLWLF+EQR
Sbjct: 178 GLPSTAVFIRDLPTDLKRKNDLKKMFTSNLASEFPEDCKFYPADTKDELHKFLWLFREQR 237

Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
           LT+PHWRNQRP+LM+QKV  VAD+ N GKCTLLL GYL    LSVNQLVH+SGAGDFQL 
Sbjct: 238 LTLPHWRNQRPYLMSQKVTTVADNGNLGKCTLLLTGYLHGRSLSVNQLVHVSGAGDFQLQ 297

Query: 301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
            IEILKDP PLN RKE D MESD++ D+EV+R++ PDPL  EP+LVENVPDPLAGEQTWP
Sbjct: 298 NIEILKDPSPLNPRKELDLMESDDVRDVEVVRSIDPDPLTQEPVLVENVPDPLAGEQTWP 357

Query: 361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDR 420
           TEAEM EA++ Q+ ++ KKR LPRGTSEYQAAWIVDD D+  SDS +D++DGMVLD+ + 
Sbjct: 358 TEAEMEEANKVQEEKRLKKRILPRGTSEYQAAWIVDDLDDDGSDSGSDSEDGMVLDETES 417

Query: 421 GFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAED 480
             PG EG + S+IDDDQ+SL+ R +D+ TEN SVMMEGE LTREQIEDEI+K+KEAHAED
Sbjct: 418 YGPGLEGVDASEIDDDQSSLDLRNSDEETENASVMMEGENLTREQIEDEIRKLKEAHAED 477

Query: 481 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVF 540
           EEFPDEV+TPLD+PARKRFAKYRGLKSFRTS+WDPKESLPPEYARIFAFD F +TQKHVF
Sbjct: 478 EEFPDEVETPLDIPARKRFAKYRGLKSFRTSAWDPKESLPPEYARIFAFDNFAKTQKHVF 537

Query: 541 ANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVL 600
           A AL+++Q+N+D  +PA  YVRLHIKE+P  +A +LC +A   P+IA GLLQHESKMSVL
Sbjct: 538 AKALEIDQDNLDGCIPAGHYVRLHIKEIPTIVASKLCTLANTLPIIACGLLQHESKMSVL 597

Query: 601 HFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVAS 660
           HFS+KKHDTYDAPIK+KEELIFHVGFRQFVARPIFS+DN+NSDKHKMERFLHAG FSVAS
Sbjct: 598 HFSIKKHDTYDAPIKSKEELIFHVGFRQFVARPIFSTDNINSDKHKMERFLHAGQFSVAS 657

Query: 661 IYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI 720
           IYAPI FP LPL+VLK A+GG AP +AAVGSLRSIDPDR ILK+I+LTGYPQRVSKLKA 
Sbjct: 658 IYAPISFPSLPLVVLKHAEGGAAPTLAAVGSLRSIDPDRTILKRIILTGYPQRVSKLKAS 717

Query: 721 VRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKR 780
           VRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKC+ NG+LQQ DTVCMSLYKR
Sbjct: 718 VRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCILNGVLQQHDTVCMSLYKR 777

Query: 781 AYPKWPEHRFPMLD 794
           AYPKWPEHRFP+LD
Sbjct: 778 AYPKWPEHRFPILD 791

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086026|ref|XP_002307783.1| predicted protein [Populus trichocarpa] gi|222857232|gb|EEE94779.1| predicted protein [Populus trichocarpa]

 Score = 1271 bits (3288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/798 (77%), Positives = 694/798 (86%), Gaps = 3/798 (0%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
           M GSR Q+NK HKSRFSTKSSRNLHKT+ KDKSRI KS+ NVAKGA+AAR+QRNKMLR+Q
Sbjct: 1   MGGSRAQLNKPHKSRFSTKSSRNLHKTSLKDKSRIAKSERNVAKGARAARLQRNKMLREQ 60

Query: 61  KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
           K+ ALLKEKRASS   S P VI+LFGLSASVN+ S+ EDLLR LS++G G +SSTV+SS+
Sbjct: 61  KKAALLKEKRASSSSTSAPLVILLFGLSASVNVESLAEDLLRVLSNDGAGDVSSTVASSE 120

Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMS--YYIDSFGNQCLSVFR 178
           Y++R +VL+APHG+L+ CMEMAKVADL+AFVAS +S  EE+ S   YIDSFG+QCLSVFR
Sbjct: 121 YKMRITVLKAPHGNLLSCMEMAKVADLIAFVASTNSLYEENASDFGYIDSFGSQCLSVFR 180

Query: 179 SLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKE 238
            LGLP+T V +RDLP+DLK + +LKKM IS+L  EFPEDCKFY ADTKDELHKFLWLFKE
Sbjct: 181 QLGLPNTVVFLRDLPSDLKGKNELKKMSISNLAGEFPEDCKFYPADTKDELHKFLWLFKE 240

Query: 239 QRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQ 298
           QRLTVPHWRNQRP+LM+QKVDVVAD+ NSGKCTLLL GYL AH LSVNQLVH+SGAGDFQ
Sbjct: 241 QRLTVPHWRNQRPYLMSQKVDVVADELNSGKCTLLLTGYLHAHSLSVNQLVHVSGAGDFQ 300

Query: 299 LGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQT 358
           L KIEILKDP PL  RKESDAM+SD++ D+EV+R+L PD +  EPL+VENV DPLAGEQT
Sbjct: 301 LQKIEILKDPNPLKLRKESDAMDSDDVIDVEVVRSLDPDSMTQEPLVVENVLDPLAGEQT 360

Query: 359 WPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQE 418
           WPTEAEM EAD+NQK ++ KKR LPRGTSEYQAAWI+D++D+  S S +D DDGMVLD+ 
Sbjct: 361 WPTEAEMDEADRNQKQKRLKKRILPRGTSEYQAAWILDETDDEGSASGSDTDDGMVLDET 420

Query: 419 DRGFPGYEGTNNSDIDDDQASLNF-RYADDGTENDSVMMEGEILTREQIEDEIKKIKEAH 477
           +  F G + TNNSD+DDD  +    R AD+ T+ DSVMME + LT+EQIE+EIKKIK AH
Sbjct: 421 EGYFRGPKETNNSDVDDDDQASLDDRDADEETDTDSVMMEDDNLTKEQIEEEIKKIKAAH 480

Query: 478 AEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQK 537
           AEDEE+PDEVDTPLD PARKRF KYRGLKSFRTSSWDPKESLPPEYARIFAFDKF +TQK
Sbjct: 481 AEDEEYPDEVDTPLDNPARKRFTKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFAKTQK 540

Query: 538 HVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKM 597
           HV A  L MEQEN  D VPA  Y RLHIKEVP  +A +LC +A+  P+IASGL QHESKM
Sbjct: 541 HVIAKFLDMEQENRYDCVPAGQYARLHIKEVPTPVASKLCLLAKTVPIIASGLFQHESKM 600

Query: 598 SVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFS 657
           SVLHFS+KKHDTYDAPIKAKEEL+FHVGFRQFVARP+FS+D+MNSDKHKMERFLHAG FS
Sbjct: 601 SVLHFSIKKHDTYDAPIKAKEELVFHVGFRQFVARPVFSTDDMNSDKHKMERFLHAGRFS 660

Query: 658 VASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKL 717
           VASIYAPI FPPLPLIVLKSA+G  APA+AAVGSLRSIDPDRIILKKIVLTGYPQRVSKL
Sbjct: 661 VASIYAPISFPPLPLIVLKSAEGSAAPAIAAVGSLRSIDPDRIILKKIVLTGYPQRVSKL 720

Query: 718 KAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSL 777
           KA VRYMFH+PEDVRWFKPVEV+TKCGR GRIKEPVGTHGAMKC FNG+LQQ DTVCMSL
Sbjct: 721 KASVRYMFHSPEDVRWFKPVEVYTKCGRHGRIKEPVGTHGAMKCTFNGVLQQHDTVCMSL 780

Query: 778 YKRAYPKWPEHRFPMLDT 795
           YKRAYPKWPEHRFP+LDT
Sbjct: 781 YKRAYPKWPEHRFPILDT 798

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457538|ref|XP_002270499.1| PREDICTED: pre-rRNA-processing protein TSR1 homolog [Vitis vinifera] gi|297745545|emb|CBI40710.3| unnamed protein product [Vitis vinifera]

 Score = 1269 bits (3285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/799 (76%), Positives = 693/799 (86%), Gaps = 6/799 (0%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
           M GSRVQVNK+HK+RFS+KSSR +HKT+ ++KSRI K   NVAKGAKAAR+QRNKM+RDQ
Sbjct: 1   MGGSRVQVNKAHKTRFSSKSSRQVHKTSLQEKSRITKPGSNVAKGAKAARLQRNKMIRDQ 60

Query: 61  KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
           KR A+LKEKRASSG  SPPRVIV+FGLSASVN+NSV +DLL  LSS+G   + STV+SS+
Sbjct: 61  KRAAILKEKRASSGSTSPPRVIVIFGLSASVNVNSVEDDLLTLLSSKGNEPVFSTVASSE 120

Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMS-YYIDSFGNQCLSVFRS 179
           Y+LRT+VL+APHGDL  C+EM KVADL+AFVASAS   EE  S YYIDSFG QCLSVFR+
Sbjct: 121 YKLRTTVLKAPHGDLSSCIEMVKVADLIAFVASASCSCEEGTSNYYIDSFGTQCLSVFRA 180

Query: 180 LGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQ 239
           LGLPST VLIRDLP + K+R +LKKMC SSL+SEFPEDCKFY ADTKDELHKF+WLFKEQ
Sbjct: 181 LGLPSTVVLIRDLPPEQKQRHELKKMCSSSLSSEFPEDCKFYPADTKDELHKFMWLFKEQ 240

Query: 240 RLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQL 299
           RL+VPHWRNQR +LMAQKVD+V DDCNSG CTLLL GYLRAH LSVNQLVHISGAGDFQL
Sbjct: 241 RLSVPHWRNQRSYLMAQKVDLVPDDCNSGNCTLLLTGYLRAHGLSVNQLVHISGAGDFQL 300

Query: 300 GKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTW 359
            KIEILKDPFPLNARK  D M+SDE++D +VIR+L+PD LK EPL++ENVPDPLAGEQTW
Sbjct: 301 SKIEILKDPFPLNARKGQDLMDSDELNDEQVIRSLAPDKLKQEPLIIENVPDPLAGEQTW 360

Query: 360 PTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDS--DEADSDSDNDADDGMVLDQ 417
           PTEAEMAEAD+NQK +  KKR LPRGTSEYQAAWIVDD+  +++D   D+DA DGMVLD+
Sbjct: 361 PTEAEMAEADRNQKQKNLKKRILPRGTSEYQAAWIVDDTDVEDSDRSDDDDAGDGMVLDE 420

Query: 418 EDRGFPGYEGTNNSDIDDDQASLNF--RYADDGTENDSVMMEGEILTREQIEDEIKKIKE 475
            +   PG+EG NN D+DDDQASL+   R  D+ T+ DSVMMEGE LTREQIEDEIKK+K+
Sbjct: 421 NESCLPGHEGNNNFDLDDDQASLSLDSRDNDEQTDVDSVMMEGENLTREQIEDEIKKLKD 480

Query: 476 AHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRT 535
           AHAEDEE+PDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIF+FD F RT
Sbjct: 481 AHAEDEEYPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFSFDNFART 540

Query: 536 QKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHES 595
           QKHV A AL MEQ  MDD +PA  Y+RLHI+EVP  +A +LC + +R P+IA GLLQHE 
Sbjct: 541 QKHVLAKALDMEQGYMDDCLPAGTYIRLHIREVPVSVASKLCMLGKRMPVIACGLLQHEC 600

Query: 596 KMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGC 655
           KMSVLHFS+KKHD YDAPIK+KEEL+FHVGFRQFV RPIFSSDNMNSDKHKME+FLHAG 
Sbjct: 601 KMSVLHFSIKKHDAYDAPIKSKEELVFHVGFRQFVVRPIFSSDNMNSDKHKMEKFLHAGR 660

Query: 656 FSVASIYAPICFPPLPLIVLKSA-DGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRV 714
           FS+AS+YAPI F PLPLI LKS  D   +PAV A GSLR +DPDRIILKKI+LTGYPQRV
Sbjct: 661 FSIASVYAPISFTPLPLIALKSVNDVAASPAVVAFGSLRCVDPDRIILKKIILTGYPQRV 720

Query: 715 SKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVC 774
           SKLKA VRYMFH+P+DVRWFKPVEVWTKCGRRGR+KEPVGTHG MKC+FNG+LQQ DTVC
Sbjct: 721 SKLKAAVRYMFHSPDDVRWFKPVEVWTKCGRRGRVKEPVGTHGTMKCIFNGVLQQHDTVC 780

Query: 775 MSLYKRAYPKWPEHRFPML 793
           MSLYKR YPKWPEH FP+L
Sbjct: 781 MSLYKRTYPKWPEHGFPLL 799

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400634|ref|NP_564480.1| uncharacterized protein [Arabidopsis thaliana] gi|13605690|gb|AAK32838.1|AF361826_1 At1g42440/F7F22_7 [Arabidopsis thaliana] gi|22137072|gb|AAM91381.1| At1g42440/F7F22_7 [Arabidopsis thaliana] gi|23397226|gb|AAN31895.1| unknown protein [Arabidopsis thaliana] gi|332193797|gb|AEE31918.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 1175 bits (3039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/794 (70%), Positives = 669/794 (84%), Gaps = 3/794 (0%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
           M  SRVQVNK+HK+RFS+KSSRNLH+T  +D  RIGKSD N  KGAKAARVQR KMLR+Q
Sbjct: 1   MGRSRVQVNKAHKTRFSSKSSRNLHRTNLQDSGRIGKSDSNYVKGAKAARVQRGKMLREQ 60

Query: 61  KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
           KR A+LKEKRAS GI S PRVIVLF LSASV LNS+ ED+L+ LSS+G+G  SSTV+SS+
Sbjct: 61  KRAAVLKEKRASGGINSAPRVIVLFPLSASVELNSLGEDVLKLLSSDGSGIASSTVASSE 120

Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
           Y+LR +VL+APHGDL+ CMEMAKVADL+AFVASAS+  EE+ S +IDSFG+QCLSVFRS+
Sbjct: 121 YKLRATVLKAPHGDLLTCMEMAKVADLMAFVASASAPWEENSSNFIDSFGSQCLSVFRSI 180

Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
           GLPST VLIRDLP+D+KK+ ++KKMC S L SEFPEDCKFY ADT+DELHKF+WLFK QR
Sbjct: 181 GLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFYPADTRDELHKFMWLFKAQR 240

Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
           LTVPHWR+QR +++A+K  ++ DD +SGKCTLLL GYLRA  LSVNQLVH+SG GDFQ  
Sbjct: 241 LTVPHWRSQRSYIVARKAGMLVDDESSGKCTLLLSGYLRARKLSVNQLVHVSGVGDFQFS 300

Query: 301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
           KIE+LKDPFPLN RK  ++ME D+ HD EV+++L PDP+K EPL++EN PDPLAGEQTWP
Sbjct: 301 KIEVLKDPFPLNERKNQNSMELDDSHDEEVLKSLVPDPMKQEPLVIENTPDPLAGEQTWP 360

Query: 361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDR 420
           TE EMAEAD+NQK  + KK+ LPRGTSEYQAAWIVD++DE DSD+ +  D+GMVLD+ + 
Sbjct: 361 TEEEMAEADKNQKQGRLKKKTLPRGTSEYQAAWIVDETDEEDSDNGDSDDNGMVLDRGED 420

Query: 421 GFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAED 480
                EG  + + +DD  SLN R  D  T+N+S M++ E LT EQI+DEIKKIKEA+A+D
Sbjct: 421 S--NQEGMYDQEFEDDGKSLNLRDIDTETQNESEMVDDEDLTEEQIKDEIKKIKEAYADD 478

Query: 481 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVF 540
           EEFPDEV+TP+DVPAR+RFAKYRGLKSFRTSSWDP ESLP +YARIFAFD   RTQK V 
Sbjct: 479 EEFPDEVETPIDVPARRRFAKYRGLKSFRTSSWDPNESLPQDYARIFAFDNVARTQKLVL 538

Query: 541 ANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERS-PLIASGLLQHESKMSV 599
             ALKME+E+ DD VP   YVRLHIKEVP G A +L  +   + P+I  GLLQHESKMSV
Sbjct: 539 KQALKMEEEDRDDCVPIGSYVRLHIKEVPLGAASKLSSLVNTTKPIIGFGLLQHESKMSV 598

Query: 600 LHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVA 659
           LHFSVKK+D Y+APIK KEEL+FHVGFRQF+ARP+F++DN +SDKHKMERFLH GCFS+A
Sbjct: 599 LHFSVKKYDGYEAPIKTKEELMFHVGFRQFIARPVFATDNFSSDKHKMERFLHPGCFSLA 658

Query: 660 SIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKA 719
           SIY PI FPPLPL+VLK ++G   PA+AA+GSL+S++P++IILKKI+LTGYPQRVSK+KA
Sbjct: 659 SIYGPISFPPLPLVVLKISEGSDPPAIAALGSLKSVEPNKIILKKIILTGYPQRVSKMKA 718

Query: 720 IVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYK 779
            VRYMFHNPEDV+WFKPVEVW+KCGRRGR+KEPVGTHGAMKC+FNG++QQ D VCM+LYK
Sbjct: 719 SVRYMFHNPEDVKWFKPVEVWSKCGRRGRVKEPVGTHGAMKCIFNGVVQQHDVVCMNLYK 778

Query: 780 RAYPKWPEHRFPML 793
           RAYPKWPE  +P L
Sbjct: 779 RAYPKWPERLYPQL 792

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841055|ref|XP_002888409.1| hypothetical protein ARALYDRAFT_894100 [Arabidopsis lyrata subsp. lyrata] gi|297334250|gb|EFH64668.1| hypothetical protein ARALYDRAFT_894100 [Arabidopsis lyrata subsp. lyrata]

 Score = 1162 bits (3005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/794 (70%), Positives = 661/794 (83%), Gaps = 4/794 (0%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCN-VAKGAKAARVQRNKMLRD 59
           M  SR+QVNK+HK+RF++KSSRNLH+T+ +D  RIGKSD N   KGAKAAR QR KMLR+
Sbjct: 1   MGNSRIQVNKAHKTRFTSKSSRNLHRTSLQDSCRIGKSDSNNYVKGAKAARFQRGKMLRE 60

Query: 60  QKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSS 119
           QKR  +LKEKRAS G+ S PRVIVLF LSASV L+S+ EDLL  LSS+G+G  SSTV+SS
Sbjct: 61  QKRATVLKEKRASGGLNSAPRVIVLFPLSASVELDSLNEDLLELLSSDGSGVTSSTVASS 120

Query: 120 KYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS 179
           +Y+L+ +VL+APHGDL+ CMEMAKVADL+AFVASASS  EE+ S YIDSFGNQCLSVFRS
Sbjct: 121 EYKLKATVLKAPHGDLLTCMEMAKVADLMAFVASASSPWEENKSNYIDSFGNQCLSVFRS 180

Query: 180 LGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQ 239
           +GLPST VLIRDLP++LKK+ +LKK+C S L SEFPEDCKFY ADT+DELHKF+WLFK Q
Sbjct: 181 IGLPSTTVLIRDLPSELKKKNELKKICASQLASEFPEDCKFYPADTRDELHKFMWLFKAQ 240

Query: 240 RLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQL 299
           RLTVPHWR+QRP+++AQKV ++ DD +SGKCTLLL GYLRA  LS+NQLVH+SG GDFQ 
Sbjct: 241 RLTVPHWRSQRPYVVAQKVGMLVDDESSGKCTLLLSGYLRARKLSINQLVHVSGVGDFQF 300

Query: 300 GKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTW 359
            KIE+L DPFPLN RK  ++ME D +HD EV+ +L PDP+K EPL+VEN PDPLAGEQTW
Sbjct: 301 SKIEVLNDPFPLNERKNQNSMELDALHDEEVLNSLVPDPIKQEPLVVENTPDPLAGEQTW 360

Query: 360 PTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQED 419
           PTE EMAEAD+NQK  K KK+ LPRGTSEYQAAWIVDD+DE DSD  +  D+GMVLD+E+
Sbjct: 361 PTEEEMAEADKNQKQGKLKKKTLPRGTSEYQAAWIVDDTDEEDSDIGDSDDNGMVLDREE 420

Query: 420 RGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAE 479
                 E   + + +DD+ SLN R  D GT+NDS MM+ E LT EQI+DEIKKIKEAHA+
Sbjct: 421 DA--NEERKYDQEFEDDEKSLNVRDFDSGTQNDSEMMDDEDLTDEQIKDEIKKIKEAHAD 478

Query: 480 DEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHV 539
           DEEFPDEV+TP+DVPAR+ FAKYRGLKSFRTSSWDP ESLP +YARIFAFD   RTQK V
Sbjct: 479 DEEFPDEVETPIDVPARRCFAKYRGLKSFRTSSWDPNESLPQDYARIFAFDNVARTQKLV 538

Query: 540 FANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSV 599
              ALKME+E+ DD V    YVRLHIKEVP G A +L  +    P+I   L+QHE +MSV
Sbjct: 539 LKQALKMEEEDRDDCVQTGSYVRLHIKEVPLGAASKLSSLVNTKPIIGFRLIQHEIQMSV 598

Query: 600 LHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVA 659
           LHFSVKK+D Y+APIK KEEL+FHVGFRQ +ARP+FS+DN +SDKHKMERFLH+G FS+A
Sbjct: 599 LHFSVKKYDGYEAPIKTKEELMFHVGFRQVIARPVFSTDNFSSDKHKMERFLHSGSFSLA 658

Query: 660 SIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKA 719
           SIY PI FPPLPL+ LK ++G   PAVAA+GSL+SI+P++IILKKI+LTGYPQRVSK+KA
Sbjct: 659 SIYGPISFPPLPLVALKISEGS-DPAVAALGSLKSIEPNKIILKKIILTGYPQRVSKMKA 717

Query: 720 IVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYK 779
            VRYMFHNPEDV+WFKPVEVW+KCGRRGR+KEPVGTHGAMKC+FNG++QQ D VCM+LYK
Sbjct: 718 SVRYMFHNPEDVKWFKPVEVWSKCGRRGRVKEPVGTHGAMKCIFNGVVQQHDIVCMNLYK 777

Query: 780 RAYPKWPEHRFPML 793
           RAYPKWPE  +P L
Sbjct: 778 RAYPKWPERLYPQL 791

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508752|ref|XP_003523118.1| PREDICTED: pre-rRNA-processing protein TSR1 homolog [Glycine max]

 Score = 1140 bits (2948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/792 (72%), Positives = 663/792 (83%), Gaps = 2/792 (0%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
           M GSRVQVNK HKSRFS+KSSRNLHKT+ KD+  I KS+ NV KGA+AAR+QRNKM+RDQ
Sbjct: 1   MGGSRVQVNKPHKSRFSSKSSRNLHKTSVKDRLAIAKSERNVGKGARAARIQRNKMIRDQ 60

Query: 61  KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
           KR A+LKEKR  SG  SPPRVIVLF L ASV+L S+ +DLL  LS +    LS TV+SS+
Sbjct: 61  KRAAVLKEKRELSGSRSPPRVIVLFALCASVDLESLADDLLSLLSKDTCVVLSGTVASSE 120

Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
           YR R +VL+APHGDL+ CMEMAKVADL+ FVASA S  EE+ SYYIDSFGNQCLSVFRSL
Sbjct: 121 YRTRITVLKAPHGDLLSCMEMAKVADLMVFVASARSSCEETDSYYIDSFGNQCLSVFRSL 180

Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
           GLPSTAV IRDL TDLK+R +LKKMC SSL SEFPEDCKFY ADTKDELHKFLWLFKEQR
Sbjct: 181 GLPSTAVFIRDLSTDLKQRNELKKMCTSSLASEFPEDCKFYPADTKDELHKFLWLFKEQR 240

Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
           L VPHWR QR +L++QKVD   D  NS KCTL L GYLR+  LSVNQLVH+SGAGDFQL 
Sbjct: 241 LKVPHWRTQRSYLLSQKVDAEYDG-NSEKCTLFLTGYLRSRNLSVNQLVHVSGAGDFQLS 299

Query: 301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
           KIE+LKDP PLN+RK  D M++DE+HD EVI +L+PDP   E L+VEN+PDPLAGEQTWP
Sbjct: 300 KIEVLKDPCPLNSRKNQDLMDADEMHDAEVIGSLAPDPQNQEALVVENIPDPLAGEQTWP 359

Query: 361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDR 420
           TEAE+A+AD+++K +K KKR+LP GTSEYQAAWIVDDSDE +SD DN+ DDGMVLD+ + 
Sbjct: 360 TEAEIAKADEDKKKKKIKKRSLPHGTSEYQAAWIVDDSDEEESDCDNENDDGMVLDEGED 419

Query: 421 GFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAED 480
           GFPG E    SD D D ASL    +D+ T+ DSVMME + LTRE+IEDE+K++KEAHA D
Sbjct: 420 GFPGQE-NRYSDFDGDGASLRLGDSDEETDIDSVMMEVDNLTREKIEDELKELKEAHAAD 478

Query: 481 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVF 540
           EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLP +YARIF FD F RTQKHV 
Sbjct: 479 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQDYARIFEFDNFKRTQKHVL 538

Query: 541 ANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVL 600
           A AL+++QEN +D +P   Y RLHI  VP+ +A +L  +A+  P+ A GLL+HESK+SVL
Sbjct: 539 AKALELDQENREDCIPVGSYARLHIMGVPSAVASKLSLLAKTIPVTACGLLKHESKVSVL 598

Query: 601 HFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVAS 660
           HFSVKKH+TYDAPIK+KEELIFHVGFRQFV RPIFSS+ +N+DK+KMERFLHAG FSVAS
Sbjct: 599 HFSVKKHETYDAPIKSKEELIFHVGFRQFVGRPIFSSEFINTDKNKMERFLHAGRFSVAS 658

Query: 661 IYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI 720
           IYAPI FPPLP I+LK A    APAVAAVGSL+++D DRIILK+++LTGYPQRVSK KA 
Sbjct: 659 IYAPISFPPLPTIILKRAGEDAAPAVAAVGSLKTVDADRIILKRVILTGYPQRVSKRKAS 718

Query: 721 VRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKR 780
           VR+MF+NPEDV+WFKPVE++TK G RGRIKEPVGTHG MKC+ NG+L+QRDTVCM+L+KR
Sbjct: 719 VRHMFYNPEDVKWFKPVELYTKRGLRGRIKEPVGTHGTMKCLLNGVLEQRDTVCMNLFKR 778

Query: 781 AYPKWPEHRFPM 792
           AYPKWP H FP+
Sbjct: 779 AYPKWPTHHFPL 790

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852102|ref|XP_002893932.1| hypothetical protein ARALYDRAFT_473739 [Arabidopsis lyrata subsp. lyrata] gi|297339774|gb|EFH70191.1| hypothetical protein ARALYDRAFT_473739 [Arabidopsis lyrata subsp. lyrata]

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/813 (68%), Positives = 657/813 (80%), Gaps = 35/813 (4%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
           M  SRVQVNK+HK+RFS+KSSRNLH+T+ +D +RIGKSD N  KGAKAARVQR KMLR+Q
Sbjct: 1   MGRSRVQVNKAHKTRFSSKSSRNLHRTSLQDSNRIGKSDNNYVKGAKAARVQRGKMLREQ 60

Query: 61  KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
           KR A+LKEKRAS G+ S PRVIVLF LSASV LNS+ ED+L+ LSS+G+G  SSTV+SS+
Sbjct: 61  KRAAVLKEKRASGGLHSAPRVIVLFPLSASVELNSLGEDVLKLLSSDGSGNCSSTVASSE 120

Query: 121 YRLRTSVLQAPHGDLVGCMEMAK-------------------VADLVAFVASASSFSEES 161
           Y+LR +VL+APHGDL+ CMEMAK                   VADL+AFVASAS+  EE+
Sbjct: 121 YKLRATVLKAPHGDLLTCMEMAKACELLSAFVGSFREESLSQVADLMAFVASASAPLEEN 180

Query: 162 MSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFY 221
            S +IDSFG+QCLSV RS+GLPST VLIRDLP+D+KK+ ++KKMC S L SEFPEDCKFY
Sbjct: 181 SSNFIDSFGSQCLSVLRSIGLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFY 240

Query: 222 AADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAH 281
            ADT+DELHKF+WLFK QRLTVPHWR+QRP+++AQKV ++ DD +SGKCTLLL GYLRA 
Sbjct: 241 PADTRDELHKFMWLFKAQRLTVPHWRSQRPYVVAQKVGMLVDDESSGKCTLLLSGYLRAR 300

Query: 282 CLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKL 341
            LSVNQLVH+SG GDFQ  KIE+LKDPFPLN RK  ++ME D+ HD EV+++L PDP+K 
Sbjct: 301 KLSVNQLVHVSGVGDFQFSKIEVLKDPFPLNERKNQNSMELDDSHDEEVLKSLVPDPMKQ 360

Query: 342 EPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEA 401
           EPL+VEN PDPLAGEQTWPTE EMAEAD+ QK    KK+ LPRGTSEYQAAWIVD++DE 
Sbjct: 361 EPLVVENTPDPLAGEQTWPTEEEMAEADKTQKQGNVKKKTLPRGTSEYQAAWIVDETDEE 420

Query: 402 DSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEIL 461
           DSD+ +  D+GMVLD+ D      +G  + + +DD+ SLN R  D  T+N+S MM+ E L
Sbjct: 421 DSDNGDSDDNGMVLDRGDDS--NQKGRYDQEFEDDEKSLNLRDIDTETQNESEMMDDEDL 478

Query: 462 TREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPP 521
           T EQI+DEIKKIKEA+AEDEEFPDE++TP+DVPAR+RFAKYRGLKSFRTSSWDP ESLP 
Sbjct: 479 TEEQIKDEIKKIKEAYAEDEEFPDEIETPIDVPARRRFAKYRGLKSFRTSSWDPNESLPQ 538

Query: 522 EYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAE 581
           +YARIFAFD   RTQK +    L               YVRLHIKEVP G A +L  +  
Sbjct: 539 DYARIFAFDNVARTQKLMIVYQL-------------GSYVRLHIKEVPLGAASKLSSLVN 585

Query: 582 R-SPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNM 640
              P+I  GLLQHESKMSVLHFSVKK+D Y+APIK KEEL+FHVGFRQF+ARP+FS+DN 
Sbjct: 586 TLKPIIGFGLLQHESKMSVLHFSVKKYDGYEAPIKTKEELMFHVGFRQFIARPVFSTDNF 645

Query: 641 NSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRI 700
           +SDKHKMERFLH G FS+ASIY PI FPPLPL+VLK ++G   PAVAA+GSL+S+D ++I
Sbjct: 646 SSDKHKMERFLHPGRFSLASIYGPISFPPLPLVVLKISEGSNTPAVAALGSLKSVDTNKI 705

Query: 701 ILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMK 760
           ILKKI+LTGYPQRVSK+KA VRYMFHNPEDV+WFKPVEVW+KCGRRGR+KEPVGTHGAMK
Sbjct: 706 ILKKIILTGYPQRVSKMKASVRYMFHNPEDVKWFKPVEVWSKCGRRGRVKEPVGTHGAMK 765

Query: 761 CVFNGILQQRDTVCMSLYKRAYPKWPEHRFPML 793
           C+FNG++QQ D VCM+LYKRAYPKWPE  +P L
Sbjct: 766 CIFNGVVQQHDIVCMNLYKRAYPKWPERLYPQL 798

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487337|ref|XP_004157576.1| PREDICTED: LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog [Cucumis sativus]

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/807 (68%), Positives = 652/807 (80%), Gaps = 26/807 (3%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
           M G+R QVNK HKSRFS+K++R  HKT+ KDKS++ K+  NVAKGA+AAR+QR+KM+R+Q
Sbjct: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLKDKSKVTKN--NVAKGARAARLQRSKMIREQ 58

Query: 61  KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
           KR A+L++KR  SG  SPPRVIVLF LSASV+LN + EDLL  L+    GA SSTV+SS+
Sbjct: 59  KRAAVLQDKRTLSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAP---GASSSTVASSE 115

Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
           Y+LR +VL+AP+GDL  CMEMAKVADL+AFVASAS + E S S YIDSFG++CLSV RSL
Sbjct: 116 YKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSL 175

Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
           GLPSTAVLIRDLPTD+KK+ D KKMCISS+ SEFPEDCKFYAADTKDELHKF+WLFKEQR
Sbjct: 176 GLPSTAVLIRDLPTDIKKKNDYKKMCISSINSEFPEDCKFYAADTKDELHKFMWLFKEQR 235

Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
           LTVPHWR QRP+LM+QKVD+VAD+C  GKCTLLL GYLRA  LSVNQLVH++GAGDFQL 
Sbjct: 236 LTVPHWRTQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLS 295

Query: 301 KIEILKDPFPLNARKESDAMES--DEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQT 358
           KIE+LKDP PLN R E DAM++  DE+ ++ +IR L P   + EPL+VEN PDPL+GEQT
Sbjct: 296 KIEVLKDPVPLNPRTEQDAMDTQDDEVTNIFIIRLLEPS--EHEPLVVENEPDPLSGEQT 353

Query: 359 WPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQE 418
           WPTEA+ AEA++NQK +  +KRAL  GTSEYQ AW + +S++ DSD DN+  D M+LD  
Sbjct: 354 WPTEADRAEAERNQKEKHLRKRALAHGTSEYQEAWDIGESEDEDSDVDNET-DCMMLDSS 412

Query: 419 DRGFPGYEGTNNSDI-DDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAH 477
                     NN  I DDDQASL F   D  T+ DSVMM+ E +T EQ  DEI+KIK AH
Sbjct: 413 YTN--EVNNLNNQGISDDDQASLEFENFDRETDMDSVMMDDE-MTNEQXLDEIQKIKNAH 469

Query: 478 AEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQK 537
           AEDEEFPDEVDTP+D+PARKRFA+YRGLKSFRTSSWDP+ESLP +YARIF F+   RTQK
Sbjct: 470 AEDEEFPDEVDTPMDIPARKRFARYRGLKSFRTSSWDPQESLPQDYARIFEFNNIARTQK 529

Query: 538 HVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKM 597
           HV A AL++EQ N D  V +  Y+RLH+KEVP G A +LCE+A+  P+ A GLLQHESKM
Sbjct: 530 HVLAKALEIEQGNGDHCVASCSYLRLHVKEVPVGAALKLCELAKSMPITACGLLQHESKM 589

Query: 598 SVLHFSVKKHDTYDA----------PIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKM 647
           SVLHFS+KKHD  +           P+K KE+L+FHVGFRQFV RPIFS+DN NSDKHKM
Sbjct: 590 SVLHFSIKKHDVSEENAKIHDKNSPPLKGKEKLVFHVGFRQFVTRPIFSTDNFNSDKHKM 649

Query: 648 ERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVL 707
           ERFLH G FS+ASIYAPI F PLPLIVLK+ +G    + AA GSL+SIDP RIILKKI+L
Sbjct: 650 ERFLHGGRFSIASIYAPISFAPLPLIVLKNVEGNT--SFAASGSLKSIDPRRIILKKIIL 707

Query: 708 TGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGIL 767
           +GYPQRVSKLKA VRYMFHNP+DVRWFKPV+V TK G+RGRIKEPVGTHGAMKCVFNG+L
Sbjct: 708 SGYPQRVSKLKATVRYMFHNPDDVRWFKPVDVSTKGGKRGRIKEPVGTHGAMKCVFNGVL 767

Query: 768 QQRDTVCMSLYKRAYPKWPEHRFPMLD 794
           QQ DTVCMSLYKR YPKWPEH FP+LD
Sbjct: 768 QQHDTVCMSLYKRVYPKWPEHLFPLLD 794

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445642|ref|XP_004140581.1| PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cucumis sativus]

 Score = 1124 bits (2906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/807 (68%), Positives = 652/807 (80%), Gaps = 26/807 (3%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
           M G+R QVNK HKSRFS+K++R  HKT+ KDKS++ K+  NVAKGA+AAR+QR+KM+R+Q
Sbjct: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLKDKSKVTKN--NVAKGARAARLQRSKMIREQ 58

Query: 61  KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
           KR A+L++KR  SG  SPPRVIVLF LSASV+LN + EDLL  L+    GA SSTV+SS+
Sbjct: 59  KRAAVLQDKRTLSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAP---GASSSTVASSE 115

Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
           Y+LR +VL+AP+GDL  CMEMAKVADL+AFVASAS + E S S YIDSFG++CLSV RSL
Sbjct: 116 YKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSL 175

Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
           GLPSTAVLIRDLPTD+KK+ D KKMCISS+ SEFPEDCKFYAADTKDELHKF+WLFKEQR
Sbjct: 176 GLPSTAVLIRDLPTDIKKKNDYKKMCISSINSEFPEDCKFYAADTKDELHKFMWLFKEQR 235

Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
           LTVPHWR QRP+LM+QKVD+VAD+C  GKCTLLL GYLRA  LSVNQLVH++GAGDFQL 
Sbjct: 236 LTVPHWRTQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLS 295

Query: 301 KIEILKDPFPLNARKESDAMES--DEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQT 358
           KIE+LKDP PLN R E DAM++  DE+ ++ +IR L P   + EPL+VEN PDPL+GEQT
Sbjct: 296 KIEVLKDPVPLNPRTEQDAMDTQDDEVTNIFIIRLLEPS--EHEPLVVENEPDPLSGEQT 353

Query: 359 WPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQE 418
           WPTEA+ AEA++NQK +  +KRAL  GTSEYQ AW + +S++ DSD DN+  D M+LD  
Sbjct: 354 WPTEADRAEAERNQKEKHLRKRALAHGTSEYQEAWDIGESEDEDSDVDNET-DCMMLDSS 412

Query: 419 DRGFPGYEGTNNSDI-DDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAH 477
                     NN  I DDDQASL F   D  T+ DSVMM+ E +T EQ  DEI+KIK AH
Sbjct: 413 YTN--EVNNLNNQGISDDDQASLEFENFDRETDMDSVMMDDE-MTNEQKLDEIQKIKNAH 469

Query: 478 AEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQK 537
           AEDEEFPDEVDTP+D+PARKRFA+YRGLKSFRTSSWDP+ESLP +YARIF F+   RTQK
Sbjct: 470 AEDEEFPDEVDTPMDIPARKRFARYRGLKSFRTSSWDPQESLPQDYARIFEFNNIARTQK 529

Query: 538 HVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKM 597
           HV A AL++EQ N D  V +  Y+RLH+KEVP G A +LCE+A+  P+ A GLLQHESKM
Sbjct: 530 HVLAKALEIEQGNGDHCVASCSYLRLHVKEVPVGAALKLCELAKSMPITACGLLQHESKM 589

Query: 598 SVLHFSVKKHDTYDA----------PIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKM 647
           SVLHFS+KKHD  +           P+K KE+L+FHVGFRQFV RPIFS+DN NSDKHKM
Sbjct: 590 SVLHFSIKKHDVSEENAKIHDKNSPPLKGKEKLVFHVGFRQFVTRPIFSTDNFNSDKHKM 649

Query: 648 ERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVL 707
           ERFLH G FS+ASIYAPI F PLPLIVLK+ +G    + AA GSL+SIDP RIILKKI+L
Sbjct: 650 ERFLHGGRFSIASIYAPISFAPLPLIVLKNVEGNT--SFAASGSLKSIDPRRIILKKIIL 707

Query: 708 TGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGIL 767
           +GYPQRVSKLKA VRYMFHNP+DVRWFKPV+V TK G+RGRIKEPVGTHGAMKCVFNG+L
Sbjct: 708 SGYPQRVSKLKATVRYMFHNPDDVRWFKPVDVSTKGGKRGRIKEPVGTHGAMKCVFNGVL 767

Query: 768 QQRDTVCMSLYKRAYPKWPEHRFPMLD 794
           QQ DTVCMSLYKR YPKWPEH FP+LD
Sbjct: 768 QQHDTVCMSLYKRVYPKWPEHLFPLLD 794

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517386|ref|XP_003527368.1| PREDICTED: pre-rRNA-processing protein TSR1 homolog [Glycine max]

 Score = 1106 bits (2860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/792 (70%), Positives = 653/792 (82%), Gaps = 2/792 (0%)

Query: 1   MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
           M GSRVQVNK HKSRFS+KSSRNLHKT+ KD+  I KS+ NV KGA+AAR+QRNKM+RDQ
Sbjct: 1   MGGSRVQVNKPHKSRFSSKSSRNLHKTSVKDRLAIAKSERNVGKGARAARIQRNKMIRDQ 60

Query: 61  KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
           KR A+LKEKR  SG  SPPRVIVLF L ASV+L S+ +DLL  LS +    LS TV+SS+
Sbjct: 61  KRAAVLKEKRELSGSRSPPRVIVLFALCASVDLESLADDLLSLLSKDTCVVLSGTVASSE 120

Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
           YR R +VL+APHGDL+ CMEMAKVADL+ FVASA S  EE+ SYYIDSFGNQCLSVFRSL
Sbjct: 121 YRTRITVLKAPHGDLLSCMEMAKVADLMVFVASARSSCEETDSYYIDSFGNQCLSVFRSL 180

Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
           GLPSTAV IRDLP +LK R +LKK+C SSL SEFPEDCKFY ADTKDELHKFLWLFKEQR
Sbjct: 181 GLPSTAVFIRDLPPELKHRNELKKICTSSLASEFPEDCKFYPADTKDELHKFLWLFKEQR 240

Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
           L VPHWR QR +L++QKVD V D  NS KCTL L GYLR+  LSVNQLVH+SGAGDFQL 
Sbjct: 241 LKVPHWRTQRSYLLSQKVDAVYDG-NSEKCTLFLTGYLRSRNLSVNQLVHVSGAGDFQLS 299

Query: 301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
           KIE+LKDP PLN++K  D M++DE+HD EVI +L PDP   E L+VEN+PDPLAGEQTWP
Sbjct: 300 KIEVLKDPCPLNSKKNQDLMDADEMHDTEVIGSLVPDPQNQEALVVENIPDPLAGEQTWP 359

Query: 361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDR 420
           TEAE+A+AD++QK +K KKR+LP GTSEYQAAWIVDDSDE      N+ DDGMVLD+ + 
Sbjct: 360 TEAEIAKADEDQKKKKIKKRSLPHGTSEYQAAWIVDDSDEESDYD-NENDDGMVLDEGED 418

Query: 421 GFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAED 480
           GFPG E    S+ D D ASL    +D+ T+NDSVMME + LTRE+IEDE+ ++KEAHA D
Sbjct: 419 GFPGQEENKYSEFDGDGASLRLGDSDEETDNDSVMMEVDNLTREKIEDELNELKEAHAAD 478

Query: 481 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVF 540
           EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLP +YARIF FD F RTQKHV 
Sbjct: 479 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQDYARIFEFDNFKRTQKHVL 538

Query: 541 ANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVL 600
           A AL+++ EN +D +    Y RLHI  VP+ +A +L  +A+  P+ A GLL+HESK+SVL
Sbjct: 539 AKALELDHENREDCISVGSYARLHIMGVPSAVASKLSLLAKTIPVTACGLLKHESKVSVL 598

Query: 601 HFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVAS 660
           HFSVKKH+ YDAPIK+KEELIFHVGFRQFV  PIFSS+ +N+DK+KMERFLHAG FSVAS
Sbjct: 599 HFSVKKHEAYDAPIKSKEELIFHVGFRQFVGWPIFSSEFINTDKNKMERFLHAGRFSVAS 658

Query: 661 IYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI 720
           IYAPI FPPLP I+LK      APAVAAVGSL+++D DRIILK+++LTGYPQRVSK KA 
Sbjct: 659 IYAPISFPPLPTIILKRDGENAAPAVAAVGSLKTVDADRIILKRVILTGYPQRVSKRKAS 718

Query: 721 VRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKR 780
           VR+MF+NPEDV+WFKPVE++TK G RGRIKEPVGTHG MKC+ NG+L+QRDTVCM+L+KR
Sbjct: 719 VRHMFYNPEDVKWFKPVELYTKRGLRGRIKEPVGTHGTMKCLLNGVLEQRDTVCMNLFKR 778

Query: 781 AYPKWPEHRFPM 792
           AYPKWP H FP+
Sbjct: 779 AYPKWPTHHFPL 790

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	795
TAIR|locus:2035893	793	AT1G42440 "AT1G42440" [Arabido	0.993	0.996	0.659	2.9e-286
UNIPROTKB|Q5R434	805	TSR1 "Pre-rRNA-processing prot	0.369	0.365	0.534	3.8e-127
UNIPROTKB|Q2NL82	804	TSR1 "Pre-rRNA-processing prot	0.369	0.365	0.531	7.1e-126
UNIPROTKB|F1NNP8	803	LOC100857289 "Uncharacterized	0.369	0.366	0.544	5e-125
UNIPROTKB|Q5XGY1	815	tsr1 "Pre-rRNA-processing prot	0.940	0.917	0.378	2.4e-122
RGD|2322150	804	Tsr1 "TSR1, 20S rRNA accumulat	0.369	0.365	0.501	1.9e-121
UNIPROTKB|F1MSR6	804	TSR1 "Uncharacterized protein"	0.369	0.365	0.521	1.4e-120
UNIPROTKB|J9NS98	801	TSR1 "Uncharacterized protein"	0.368	0.365	0.526	2e-119
MGI|MGI:2144566	803	Tsr1 "TSR1 20S rRNA accumulati	0.935	0.926	0.378	1.6e-118
UNIPROTKB|E2QYA6	656	E2QYA6 "Uncharacterized protei	0.368	0.446	0.526	9.9e-114

TAIR|locus:2035893 AT1G42440 "AT1G42440" [Arabidopsis thaliana (taxid:3702)]

 Score = 2750 (973.1 bits), Expect = 2.9e-286, P = 2.9e-286
 Identities = 524/795 (65%), Positives = 617/795 (77%)

Query:     1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
             M  SRVQVNK+HK+RFS+KSSRNLH+T  +D  RIGKSD N  KGAKAARVQR KMLR+Q
Sbjct:     1 MGRSRVQVNKAHKTRFSSKSSRNLHRTNLQDSGRIGKSDSNYVKGAKAARVQRGKMLREQ 60

Query:    61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
             KR A+LKEKRAS GI S PRVIVLF LSASV LNS+ ED+L+ LSS+G+G  SSTV+SS+
Sbjct:    61 KRAAVLKEKRASGGINSAPRVIVLFPLSASVELNSLGEDVLKLLSSDGSGIASSTVASSE 120

Query:   121 YRLRTSVLQAPHGDLVGCMEMAKVADLXXXXXXXXXXXXXXMSYYIDSFGNQCLSVFRSL 180
             Y+LR +VL+APHGDL+ CMEMAKVADL               S +IDSFG+QCLSVFRS+
Sbjct:   121 YKLRATVLKAPHGDLLTCMEMAKVADLMAFVASASAPWEENSSNFIDSFGSQCLSVFRSI 180

Query:   181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
             GLPST VLIRDLP+D+KK+ ++KKMC S L SEFPEDCKFY ADT+DELHKF+WLFK QR
Sbjct:   181 GLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFYPADTRDELHKFMWLFKAQR 240

Query:   241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
             LTVPHWR+QR +++A+K  ++ DD +SGKCTLLL GYLRA  LSVNQLVH+SG GDFQ  
Sbjct:   241 LTVPHWRSQRSYIVARKAGMLVDDESSGKCTLLLSGYLRARKLSVNQLVHVSGVGDFQFS 300

Query:   301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
             KIE+LKDPFPLN RK  ++ME D+ HD EV+++L PDP+K EPL++EN PDPLAGEQTWP
Sbjct:   301 KIEVLKDPFPLNERKNQNSMELDDSHDEEVLKSLVPDPMKQEPLVIENTPDPLAGEQTWP 360

Query:   361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVXXXXXXXXXXXXXXXXGMVLDQ-ED 419
             TE EMAEAD+NQK  + KK+ LPRGTSEYQAAWIV                GMVLD+ ED
Sbjct:   361 TEEEMAEADKNQKQGRLKKKTLPRGTSEYQAAWIVDETDEEDSDNGDSDDNGMVLDRGED 420

Query:   420 RGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTRXXXXXXXXXXXXXXXX 479
                   EG  + + +DD  SLN R  D  T+N+S M++ E LT                 
Sbjct:   421 SN---QEGMYDQEFEDDGKSLNLRDIDTETQNESEMVDDEDLTEEQIKDEIKKIKEAYAD 477

Query:   480 XXXFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHV 539
                FPDEV+TP+DVPAR+RFAKYRGLKSFRTSSWDP ESLP +YARIFAFD   RTQK V
Sbjct:   478 DEEFPDEVETPIDVPARRRFAKYRGLKSFRTSSWDPNESLPQDYARIFAFDNVARTQKLV 537

Query:   540 FANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERS-PLIASGLLQHESKMS 598
                ALKME+E+ DD VP   YVRLHIKEVP G A +L  +   + P+I  GLLQHESKMS
Sbjct:   538 LKQALKMEEEDRDDCVPIGSYVRLHIKEVPLGAASKLSSLVNTTKPIIGFGLLQHESKMS 597

Query:   599 VLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSV 658
             VLHFSVKK+D Y+APIK KEEL+FHVGFRQF+ARP+F++DN +SDKHKMERFLH GCFS+
Sbjct:   598 VLHFSVKKYDGYEAPIKTKEELMFHVGFRQFIARPVFATDNFSSDKHKMERFLHPGCFSL 657

Query:   659 ASIYAPICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLK 718
             ASIY PI FPPLPL+VLK              SL+S++P++IILKKI+LTGYPQRVSK+K
Sbjct:   658 ASIYGPISFPPLPLVVLKISEGSDPPAIAALGSLKSVEPNKIILKKIILTGYPQRVSKMK 717

Query:   719 AIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLY 778
             A VRYMFHNPEDV+WFKPVEVW+KCGRRGR+KEPVGTHGAMKC+FNG++QQ D VCM+LY
Sbjct:   718 ASVRYMFHNPEDVKWFKPVEVWSKCGRRGRVKEPVGTHGAMKCIFNGVVQQHDVVCMNLY 777

Query:   779 KRAYPKWPEHRFPML 793
             KRAYPKWPE  +P L
Sbjct:   778 KRAYPKWPERLYPQL 792

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

UNIPROTKB|Q5R434 TSR1 "Pre-rRNA-processing protein TSR1 homolog" [Pongo abelii (taxid:9601)]

 Score = 816 (292.3 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
 Identities = 162/303 (53%), Positives = 203/303 (66%)

Query:   483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
             FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  FT T+K +F  
Sbjct:   485 FPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKE 544

Query:   543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
               + E E  +       YV LH+ EVP  +    C   + +PLIA  LL HE KMSVL+ 
Sbjct:   545 VEEKEVEGAE----VGCYVTLHVSEVPVSVVE--C-FRQGTPLIAFSLLPHEQKMSVLNM 597

Query:   603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
              V++      P+KAKEELIFH GFR+F A P+FS     +DKHK++RFL A    VA++Y
Sbjct:   598 VVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTA-ADKHKLQRFLTADMALVATVY 656

Query:   663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
             API FPP  +++ K               L S+DPDR+++K++VL+G+P ++    A+VR
Sbjct:   657 APITFPPASVLLFKQKSNGMHSLIATGH-LMSVDPDRMVIKRVVLSGHPLKMFTKMAVVR 715

Query:   723 YMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAY 782
             YMF N EDV WFKPVE+ TK GRRG IKEP+GTHG MKC FNG L+ +DTV M+LYKR +
Sbjct:   716 YMFFNREDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFNGKLKSQDTVLMNLYKRVF 775

Query:   783 PKW 785
             PKW
Sbjct:   776 PKW 778

GO:0005730 "nucleolus" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|Q2NL82 TSR1 "Pre-rRNA-processing protein TSR1 homolog" [Homo sapiens (taxid:9606)]

 Score = 811 (290.5 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
 Identities = 161/303 (53%), Positives = 203/303 (66%)

Query:   483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
             FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  FT T+K +F  
Sbjct:   484 FPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKE 543

Query:   543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
               + E E  +       YV LH+ EVP  +    C   + +PLIA  LL HE KMSVL+ 
Sbjct:   544 VEEKEVEGAE----VGWYVTLHVSEVPVSVVE--C-FRQGTPLIAFSLLPHEQKMSVLNM 596

Query:   603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
              V++      P+KAKEELIFH GFR+F A P+FS     +DKHK++RFL A    VA++Y
Sbjct:   597 VVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTA-ADKHKLQRFLTADMALVATVY 655

Query:   663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
             API FPP  +++ K               L S+DPDR+++K++VL+G+P ++    A+VR
Sbjct:   656 APITFPPASVLLFKQKSNGMHSLIATGH-LMSVDPDRMVIKRVVLSGHPFKIFTKMAVVR 714

Query:   723 YMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAY 782
             YMF N EDV WFKPVE+ TK GRRG IKEP+GTHG MKC F+G L+ +DTV M+LYKR +
Sbjct:   715 YMFFNREDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVF 774

Query:   783 PKW 785
             PKW
Sbjct:   775 PKW 777

GO:0005730 "nucleolus" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|F1NNP8 LOC100857289 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 830 (297.2 bits), Expect = 5.0e-125, Sum P(2) = 5.0e-125
 Identities = 165/303 (54%), Positives = 207/303 (68%)

Query:   483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
             FPDEVDTP DVPAR RF KYRGLKSFRTS WDPKE+LP +YARI+ F  F+RT+K++F  
Sbjct:   483 FPDEVDTPRDVPARVRFQKYRGLKSFRTSPWDPKENLPRDYARIYQFQDFSRTRKNIFRQ 542

Query:   543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
               K E E    SV    YV LH+  VP  +        E  PL+   LL HE KMSVL+F
Sbjct:   543 IEKEETEGA--SV--GWYVTLHVCNVPVSVME---SFKEGKPLVLFSLLPHEQKMSVLNF 595

Query:   603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
              V++H +   P+KAKEELIFH GFR+F A P+FS  + ++DKHK+ERFL      V ++Y
Sbjct:   596 LVRRHPSNSDPVKAKEELIFHCGFRRFRASPLFSQ-HTSADKHKLERFLRLDAALVVTVY 654

Query:   663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
             API FPP  ++V K              SL ++DPDRII+K++VL+G+P ++    A+VR
Sbjct:   655 APITFPPASVLVFKQRSNGMHDLIATG-SLLAVDPDRIIIKRLVLSGHPFKIFTKAAVVR 713

Query:   723 YMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAY 782
             YMF N EDV WFKPVE+ TK GRRG IKEP+GTHG MKC F+G L+ +DTV ++LYKR Y
Sbjct:   714 YMFFNREDVMWFKPVELRTKWGRRGHIKEPLGTHGHMKCHFDGQLKSQDTVLLNLYKRVY 773

Query:   783 PKW 785
             PKW
Sbjct:   774 PKW 776

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q5XGY1 tsr1 "Pre-rRNA-processing protein TSR1 homolog" [Xenopus laevis (taxid:8355)]

 Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
 Identities = 307/811 (37%), Positives = 423/811 (52%)

Query:     3 GSRVQVNKSHKS-RFSTKSSR---NLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLR 58
             G+  Q NK HKS R   + ++   N  + AAK   +  K D       K  R  +   +R
Sbjct:    13 GAYKQQNKPHKSGRHRGRGAQDRENKGRVAAKILGKKNKKDLR-----KLDRRHKANQIR 67

Query:    59 DQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQL-SSEG-----TGAL 112
              Q++ A+L EKR+      PP +++   L A     +V++DL   + ++EG        +
Sbjct:    68 RQRKDAVLAEKRSLGTKDGPPHLVIAISLHA----RAVKDDLFSLVQNNEGDILHVNDQI 123

Query:   113 SSTVS--SSKYRLRTSVLQAPHGDLVGCMEMAKVADLXXXXXXXXXXXXXXMSYYIDSFG 170
                ++    K + R   +QA   DL   +++AKVAD                    DS+G
Sbjct:   124 KGLLALVCPKVKQRWCFIQANRDDLCSLLDLAKVADTLLFLLDPQEGW--------DSYG 175

Query:   171 NQCLSVFRSLGLPSTAVLIRDLP-TDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDEL 229
             + CLS   + GLPS  + ++ +    +KKR D+KK     + + F  D K +  DT+ E 
Sbjct:   176 DYCLSCLFAQGLPSYVLAVQGMNYIPIKKRADIKKQLSKVIENRFT-DAKLFQLDTEQEA 234

Query:   230 HKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKC-TLLLHGYLRAHCLSVNQL 288
                +     Q+     +R++R +++AQ+ D    D  SG   TL L GY+R   L+VN+L
Sbjct:   235 AVLIRQISTQKQRHLAFRSRRSYMLAQRADFQPTD-ESGLVGTLKLSGYVRGQELNVNRL 293

Query:   289 VHISGAGDFQLGKIEILKDPFPLNAR------KESDAME-SDEI-------HDLEVIRTL 334
             VHI G GDF + +I+   DP+PLN R      K    ME SDE         D++V+  +
Sbjct:   294 VHIVGHGDFHMSQIDAPPDPYPLNPRVHKPKTKSGQDMEMSDEPATGSEMEQDIKVL--M 351

Query:   335 SPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWI 394
               DP   E L  E VPDP+ GEQTWPTE E+ EA+   K   +  + +P+GTS YQAAWI
Sbjct:   352 KADPSAQESLQCEVVPDPMEGEQTWPTEEELKEAEDALKGTSKVVKKVPKGTSAYQAAWI 411

Query:   395 VXXXXXXXXXXXXXXXXGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSV 454
             +                 M  D ED     Y    +   +++          D T +D  
Sbjct:   412 LDDEGDGEEESDDDDDEDMEEDAEDAMDDAYSEEEDGSGNEEAEESETLTIPDSTRDDKY 471

Query:   455 MMEGEILTRXXXXXXXXXXXXXXXXXXXFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWD 514
                 E +                     FPDEVDTP D  AR RF KYRGLKSFRTS WD
Sbjct:   472 ---DENVDEQEEEQMLEKYKLQRQDEV-FPDEVDTPRDQIARIRFQKYRGLKSFRTSPWD 527

Query:   515 PKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAH 574
              KE+LP +YARIF F  F RT+K VF      E+E  D+      YV +HI  VP  +  
Sbjct:   528 VKENLPRDYARIFQFHDFFRTRKRVFK-----EEEEKDEGAMVGWYVTVHISAVPVSVME 582

Query:   575 RLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPI 634
                      PL+   LL HE KMSV++  V++H   + PIKAKEELIFH GFR+F A P+
Sbjct:   583 HF---KHGLPLVLCSLLPHEQKMSVMNMLVRRHPGNNEPIKAKEELIFHCGFRRFRASPL 639

Query:   635 FSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSXXXXXXXXXXXXXSLRS 694
             FS  + ++DKHK ERFL +    V ++YAPI FPP  ++V K              SL +
Sbjct:   640 FSQHS-SADKHKSERFLRSDTSVVVTVYAPITFPPASVLVFKQRYNGMQDLVATG-SLLN 697

Query:   695 IDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVG 754
             ++PDRI++K+IVL+G+P ++ K  A+VRYMF N EDV WFKPVE+ TK GRRG IKEP+G
Sbjct:   698 VNPDRIVIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLG 757

Query:   755 THGAMKCVFNGILQQRDTVCMSLYKRAYPKW 785
             THG MKC F+G L+ +DTV M+LYKR YPKW
Sbjct:   758 THGHMKCHFDGQLKSQDTVLMNLYKRVYPKW 788

GO:0005730 "nucleolus" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

RGD|2322150 Tsr1 "TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 768 (275.4 bits), Expect = 1.9e-121, Sum P(2) = 1.9e-121
 Identities = 152/303 (50%), Positives = 197/303 (65%)

Query:   483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
             FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  F  T+K +F  
Sbjct:   484 FPDEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFVNTRKRIFKE 543

Query:   543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
               + E E  +       YV LH+  VP  +        + +PLIA  LL +E KMSVL+ 
Sbjct:   544 IEEKETEGAE----VGWYVTLHVSNVPVSVVE---SFRQGAPLIAFSLLPYEQKMSVLNM 596

Query:   603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
              V +      P+KAKEELIFH GFR+F A P+FS     +DKHK +RFL A    V +++
Sbjct:   597 VVSRSPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTA-ADKHKFQRFLTADAALVVTVF 655

Query:   663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
             API FPP  +++ K               L S+DPDR+++K++VL+G+P ++    A+VR
Sbjct:   656 APITFPPASVLLFKQRRNGMHSLIATGH-LFSVDPDRMVIKRVVLSGHPFKIFTKTAVVR 714

Query:   723 YMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAY 782
             YMF + +DV WFKPVE+ TK GRRG IKEP+GTHG MKC F+G L+ +DTV M+LYKR +
Sbjct:   715 YMFFSRDDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVF 774

Query:   783 PKW 785
             PKW
Sbjct:   775 PKW 777

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1MSR6 TSR1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 797 (285.6 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
 Identities = 158/303 (52%), Positives = 198/303 (65%)

Query:   483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
             FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  F  T++ +F  
Sbjct:   484 FPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFINTRRRIFKE 543

Query:   543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
               + E E  +       YV LH+ EVP  +          +PLIA  LL HE KMSVL+ 
Sbjct:   544 IEEKEVEGAE----VGWYVTLHVSEVPVSVVEHF---KRGTPLIAFSLLPHEQKMSVLNM 596

Query:   603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
              V +H     P+KAKEELIFH GFR+F A P+FS     +DKHK +RFL A    V ++Y
Sbjct:   597 VVSRHPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTA-ADKHKFQRFLTADTALVVTVY 655

Query:   663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
             API FPP  +++ K               L S+DPDR+++K++VL+G+P ++    A+VR
Sbjct:   656 APITFPPASVLLFKQNSNGMHSLIATGHLL-SVDPDRMVIKRVVLSGHPFKIFTKTAVVR 714

Query:   723 YMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAY 782
             YMF N EDV WFKPVE+ TK GRRG IKEP+GTHG MKC F+G L+ +DTV M+LYKR +
Sbjct:   715 YMFFNREDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVF 774

Query:   783 PKW 785
             PKW
Sbjct:   775 PKW 777

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9NS98 TSR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 793 (284.2 bits), Expect = 2.0e-119, Sum P(2) = 2.0e-119
 Identities = 160/304 (52%), Positives = 201/304 (66%)

Query:   483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
             FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  FT T+K +F  
Sbjct:   481 FPDEIDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKRIFKE 540

Query:   543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAER-SPLIASGLLQHESKMSVLH 601
               + E E  +       YV LH+ EVP  +     E  +R +PLIA  LL HE KMSVL+
Sbjct:   541 IEEKEVEGAE----VGWYVTLHVSEVPLSVV----EYFKRGAPLIAFSLLPHEQKMSVLN 592

Query:   602 FSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASI 661
               V +H     P+KAKE+LIFH GFR+F A P+FS     +DKHK +RFL A    V +I
Sbjct:   593 MVVSRHPGNIEPVKAKEDLIFHCGFRRFRASPLFSQHTA-ADKHKFQRFLTADVALVVTI 651

Query:   662 YAPICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIV 721
             Y PI FPP  +++ K               L S+DPDR+++K+IVL+G+P ++    A+V
Sbjct:   652 YGPITFPPASVLLFKQNSNGMHSLIATGYLL-SVDPDRMVIKRIVLSGHPFKIFTKMAVV 710

Query:   722 RYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRA 781
             RYMF + EDV WFKPVE+ TK GRRG IKEP+GTHG MKC F+G L+ +DTV M+LYKR 
Sbjct:   711 RYMFFSREDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRV 770

Query:   782 YPKW 785
             +PKW
Sbjct:   771 FPKW 774

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:2144566 Tsr1 "TSR1 20S rRNA accumulation" [Mus musculus (taxid:10090)]

 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 307/811 (37%), Positives = 422/811 (52%)

Query:     2 TGSRVQVNKSHKSRFSTKSSRNLHKTAAKD-KSRIG-KSDCNVAKGAKAARV-QRNK--M 56
             +G   Q NK+HK         +   +A +D K R+G K  C   K  + +R+ QR++   
Sbjct:     6 SGPLKQQNKAHKG-----GRHHGGGSAQRDSKGRVGPKILCKKLK-RQLSRIDQRHRASQ 59

Query:    57 LRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTV 116
             LR QKR ++L EKR       PP  +++  L + ++L    +  L Q    GT  LS   
Sbjct:    60 LRKQKRESVLAEKRQLGSKDGPPHQVLVVPLHSRISLPEAFK--LLQNEDLGTVYLSERG 117

Query:   117 SSSKYRLRTSVLQ-------APHGDLVGCMEMAKVADLXXXXXXXXXXXXXXMSYYIDSF 169
             S+  + L    L+       A  GDL   ++MAKVAD                    DS 
Sbjct:   118 STQSFMLLCPSLKHRWFFTYARPGDLHTLLDMAKVADTILFLLDPLEGW--------DST 169

Query:   170 GNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDE 228
             G+ CLS   + GLP+  + ++ L     KK+ D +K     +   FPED K    DT+ E
Sbjct:   170 GDYCLSCLFAQGLPTYTLAVQGLSGFPPKKQIDARKKLSKMVEKRFPED-KLLLLDTQQE 228

Query:   229 LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQL 288
                 L     Q+     +R++R +L A   D V  + +    TL + GY+R   L+VN L
Sbjct:   229 SGMLLRQLANQKQRHLAFRDRRAYLFAHVADFVPSEESDLVGTLKISGYVRGRTLNVNSL 288

Query:   289 VHISGAGDFQLGKIEILKDPFPLNAR------KESDAME---SDEIHDLEV-IRTL-SPD 337
             +HI G GDFQ+ +I+   DPFPLN R      K + AME   +D   D+E  ++ L   D
Sbjct:   289 LHIVGHGDFQMNQIDAPVDPFPLNPRVIKSQKKPNMAMEVCVTDAAPDMEEDLKVLMKAD 348

Query:   338 PLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVXX 397
             P   E L  E +PDP+ GEQTWPTE E+ EAD   K R +  + +P+GTS YQA WI+  
Sbjct:   349 PDHQESLQTEAIPDPMEGEQTWPTEEELDEADDLLKQRSRVVKKVPKGTSSYQAEWILDE 408

Query:   398 XXXXXXXXXXXXXXGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYAD---DGTENDSV 454
                           G   D +  GF   E  + S  ++++        +   D   ++ V
Sbjct:   409 GDESDGEG------GEYDDIQHEGFMEEESQDGSGEEEEEECETMTLGESVRDDLYDEKV 462

Query:   455 MMEGEILTRXXXXXXXXXXXXXXXXXXXFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWD 514
               E E                       FPDE+DTP DV AR RF KYRGLKSFRTS WD
Sbjct:   463 DAEDE--------ERMLEKYKQERLEEMFPDEMDTPRDVAARIRFQKYRGLKSFRTSPWD 514

Query:   515 PKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAH 574
             PKE+LP +YARIF F  F  T+K +F    + E E  +       YV LH+ +VP  +  
Sbjct:   515 PKENLPRDYARIFQFQNFVNTRKRIFKEIEEKEAEGAE----VGWYVTLHVSDVPVSVVE 570

Query:   575 RLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPI 634
                + A   PLIA  LL +E KMSVL+  V ++     P+KAKEELIFH GFR+F A P+
Sbjct:   571 YFRQGA---PLIAFSLLPYEQKMSVLNMVVSRNPGNTEPVKAKEELIFHCGFRRFRASPL 627

Query:   635 FSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSXXXXXXXXXXXXXSLRS 694
             FS     +DKHK +RFL A    V +++API FPP  +++ K               L S
Sbjct:   628 FSQHTA-ADKHKFQRFLTADAAFVVTVFAPITFPPASVLLFKQRRNGMHSLIATGH-LFS 685

Query:   695 IDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVG 754
             +DPDR+++K++VL+G+P ++    A+VRYMF N EDV WFKPVE+ TK GRRG IKEP+G
Sbjct:   686 VDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMWFKPVELRTKWGRRGHIKEPLG 745

Query:   755 THGAMKCVFNGILQQRDTVCMSLYKRAYPKW 785
             THG MKC F+G L+ +DTV M+LYKR +PKW
Sbjct:   746 THGHMKCSFDGKLKSQDTVLMNLYKRVFPKW 776

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|E2QYA6 E2QYA6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 792 (283.9 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
 Identities = 160/304 (52%), Positives = 201/304 (66%)

Query:   483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
             FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  FT T+K +F  
Sbjct:   336 FPDEIDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFTNTRKRIFKE 395

Query:   543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAER-SPLIASGLLQHESKMSVLH 601
               + E E  +       YV LH+ EVP  +     E  +R +PLIA  LL HE KMSVL+
Sbjct:   396 IEEKEVEGAE----VGWYVTLHVSEVPLSVV----EYFKRGAPLIAFSLLPHEQKMSVLN 447

Query:   602 FSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASI 661
               V +H     P+KAKE+LIFH GFR+F A P+FS     +DKHK +RFL A    V +I
Sbjct:   448 MVVSRHPGNIEPVKAKEDLIFHCGFRRFRASPLFSQHTA-ADKHKFQRFLTADVALVVTI 506

Query:   662 YAPICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIV 721
             Y PI FPP  +++ K               L S+DPDR+++K+IVL+G+P ++    A+V
Sbjct:   507 YGPITFPPASVLLFKQNSNGMHSLIATGYLL-SVDPDRMVIKRIVLSGHPFKIFTKMAVV 565

Query:   722 RYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRA 781
             RYMF + EDV WFKPVE+ TK GRRG IKEP+GTHG MKC F+G L+ +DTV M+LYKR 
Sbjct:   566 RYMFFSREDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRV 625

Query:   782 YPKW 785
             +PKW
Sbjct:   626 FPKW 629

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5SWD9	TSR1_MOUSE	No assigned EC number	0.3966	0.9132	0.9041	yes	no
O13956	TSR1_SCHPO	No assigned EC number	0.3035	0.9270	0.9412	yes	no
Q9VP47	TSR1_DROME	No assigned EC number	0.3412	0.9484	0.9262	yes	no
Q19329	TSR1_CAEEL	No assigned EC number	0.3282	0.8767	0.8878	yes	no
Q5R434	TSR1_PONAB	No assigned EC number	0.3903	0.9345	0.9229	yes	no
Q2NL82	TSR1_HUMAN	No assigned EC number	0.3866	0.9396	0.9291	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_V1631	hypothetical protein (799 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.170.45.1	SubName- Full=Putative uncharacterized protein; (274 aa)				•	•		•		0.799
	eugene3.00640202	hypothetical protein (1181 aa)				•	•		•	•	0.763
	gw1.I.4832.1	hypothetical protein (422 aa)				•			•		0.742
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•			•		0.725
	eugene3.00090493	hypothetical protein (840 aa)				•	•				0.718
	estExt_fgenesh4_pm.C_280108	hypothetical protein (960 aa)				•			•		0.717
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•			•		0.711
	gw1.86.17.1	hypothetical protein (573 aa)				•			•		0.699
	gw1.X.2964.1	hypothetical protein (516 aa)				•			•		0.692
	eugene3.00160311	hypothetical protein (691 aa)				•			•		0.688

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	795
pfam04950	293	pfam04950, DUF663, Protein of unknown function (DU	1e-125
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	3e-99
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	5e-23
smart00785	83	smart00785, AARP2CN, AARP2CN (NUC121) domain	2e-22
pfam08142	81	pfam08142, AARP2CN, AARP2CN (NUC121) domain	5e-19
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	6e-14
cd01882	231	cd01882, BMS1, Bms1, an essential GTPase, promotes	3e-04

>gnl|CDD|218343 pfam04950, DUF663, Protein of unknown function (DUF663)

 Score =  376 bits (967), Expect = e-125
 Identities = 151/300 (50%), Positives = 189/300 (63%), Gaps = 11/300 (3%)

Query: 486 EVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDKFTRTQKHVFAN 542
           EV+TP DVPAR+RFAKYRGLKSFRTS WDP E   +LP +YARIF F  +  T+K +   
Sbjct: 1   EVETPPDVPARERFAKYRGLKSFRTSPWDPNEKDPNLPNDYARIFQFQNYKNTKKRILNE 60

Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
               E+E   + V    YVRL IK VP  +A        +  +I  GLL HE KMSV++F
Sbjct: 61  Y---EEEKRIEGVKPGWYVRLEIKNVPKELAENF---NSKQLIIVFGLLPHEHKMSVVNF 114

Query: 603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
            +KKH  Y  P+K+KE LI  VGFR+F ++PI+S  N ++DKHK ER+L       A+ Y
Sbjct: 115 KIKKHRWYKKPLKSKEPLIIQVGFRRFQSQPIYS-QNTSNDKHKYERYLPPHKTCNATFY 173

Query: 663 APICFPPLPLIVLK-SADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIV 721
            PI FP  PL+  K S        +AA G +   DP+RII KK+ LTG+P ++ K  A V
Sbjct: 174 GPITFPNSPLLAFKKSFSDTNGFRIAATGCILECDPNRIIAKKLKLTGHPYKIFKKTAFV 233

Query: 722 RYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRA 781
           RYMF NPEDV WFKPV ++TK GRRG IKE +GTHG  K  F+G L  +D V M LYKR 
Sbjct: 234 RYMFFNPEDVEWFKPVPLFTKSGRRGHIKEALGTHGYFKATFDGKLNMQDIVIMKLYKRV 293

This family contains several uncharacterized eukaryotic proteins. Length = 293

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score =  324 bits (831), Expect = 3e-99
 Identities = 208/805 (25%), Positives = 348/805 (43%), Gaps = 76/805 (9%)

Query: 4   SRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRL 63
           S ++ +KS+KS+ ++K +         +K  +G       +  K  R  R K        
Sbjct: 7   SSLKGHKSYKSKHASKGALKRLYKGKVEKEPVGTGKP-DKQMKKRDRRNRAKQKSIGSIA 65

Query: 64  ALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALSSTVS 117
            + + K   SG     +VI +  L    +   + + LL     EG       G L  +V 
Sbjct: 66  RIKENKLPFSGKNGAYKVITIVPLGNECDGYDILDKLLHGNDDEGIMVQEVDGGLFYSVH 125

Query: 118 SSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVF 177
             ++++     +          ++ KV+D+V F  S            +D FG Q     
Sbjct: 126 IEEFKMNLLFKRPDELSFFQLGDVCKVSDIVVFGLSDVQ--------EVDEFGEQIGRKL 177

Query: 178 RSLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWL 235
           +  G+ S       L +    K+   +K+   S +   FP   +        +    + +
Sbjct: 178 KLQGIKSFIPSCLFLSSVQSEKRDAAVKQSLESFVRRFFPSKERVVEIGGLMDALNVVRI 237

Query: 236 FKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG 295
                    +WR+ RP+++  +      +       L   G +R    + N+L HI   G
Sbjct: 238 LCTSVPRSINWRDNRPYIVPSEASYSDGE-------LFYEGTVRGIGFNANRLKHIPDFG 290

Query: 296 DFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAG 355
           DF   KI +    +    R+      +D    LE+      +       L E  P+   G
Sbjct: 291 DFLSNKIIVNGQ-YEQTIREIF----ADRATKLELDLQTVFESNMNRDTLDEYAPE---G 342

Query: 356 EQTWPTEAEMAEADQNQKHR------------KQKKRALPRGTSEYQAAWIVDDSDEADS 403
           E       E  E D     R              KK A+P+GTS YQA W  D+ +E   
Sbjct: 343 EDLRSDYDEDFEYDGLTTVRIDDHGFLPGREQTSKKAAVPKGTSFYQAKWAEDEEEEDGQ 402

Query: 404 DSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTR 463
            +D +      +D +D            + D+++ + +   A D    D+   E   L+ 
Sbjct: 403 CNDEE-STMSAIDDDD----------PKENDNEEVAGDEESAID----DNEGFEE--LSP 445

Query: 464 EQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLP 520
           E+ E ++++ ++   ED EFPDE +      A +R+ +YRGL++  T SW   E   S P
Sbjct: 446 EEEERQLREFRDMEKEDREFPDEAELQPSESAIERYKEYRGLRNLYTCSWRSDEKDPSFP 505

Query: 521 PEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMA 580
            E+  +  FD +   +  V        +++ +   P    VR+ ++  P  +   L E  
Sbjct: 506 EEWKSLVFFDNYRNAKNLVV-------KKDNESVAPDGQMVRIKLR-FPKFLYEGLIE-- 555

Query: 581 ERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFS-SDN 639
            +  L+  GLL++E K +V +FS+++H  Y+ P+K++E ++  +G R+    P+ S   N
Sbjct: 556 PQILLVVYGLLEYEDKKTVHNFSLQRHFEYEVPLKSEESMVVQLGHRRVDICPLISKGSN 615

Query: 640 MNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLK-SADGGVAPAVAAVGSLRSIDPD 698
             ++  K  R L      VAS   PI F   P+I+ K SA   ++  + A G + + D D
Sbjct: 616 SPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASGGMNNFDGD 675

Query: 699 RIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGA 758
           R+I K+ VLTG+P +  K    VRYMF +PEDV WFK ++++TK GR G IKEP+GTHG 
Sbjct: 676 RVIAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPLGTHGY 735

Query: 759 MKCVFNGILQQRDTVCMSLYKRAYP 783
            K  F+G ++ +D V MSLYKR +P
Sbjct: 736 FKATFSGKIKSQDKVAMSLYKRMFP 760

Length = 769

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score =  105 bits (262), Expect = 5e-23
 Identities = 95/402 (23%), Positives = 176/402 (43%), Gaps = 51/402 (12%)

Query: 376 KQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDD 435
           K+K  +L +  S +Q    +D S E + +   D + G   D ED         N+SD + 
Sbjct: 567 KKKWSSLAQLKSRFQKDATLD-SIEGEEELIQDDEKGNFEDLEDE-------ENSSDNEM 618

Query: 436 DQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPA 495
           +++  +   A++    D V  E E   RE+   + ++++  + E EE  D     +D   
Sbjct: 619 EESRGSSVTAENEESADEVDYETE---REENARKKEELR-GNFELEERGDPEKKDVDWYT 674

Query: 496 RKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSV 555
            ++      LK  R+   + +  +P     I  +                          
Sbjct: 675 EEKRKIEEQLKINRS---EFETMVPESRVVIEGY-------------------------- 705

Query: 556 PASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIK 615
            A  YVR+ +  VP        E   R P++  GLL  E +M ++   +K+H  +   +K
Sbjct: 706 RAGRYVRIVLSHVPLEFVD---EFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRWHKKILK 762

Query: 616 AKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFL--HAGCFSVASIYAPICFPPLPLI 673
             + LIF VG+R+F + P++S  +  + +++M ++   H  C    S Y P+  P     
Sbjct: 763 TNDPLIFSVGWRRFQSIPVYSMKDSRT-RNRMLKYTPEHMHCN--VSFYGPVVPPNTGFC 819

Query: 674 VLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRW 733
            ++S  G     V A+G++  ++ D  ++KK+ L GYP+++ +    VR MF +  +V  
Sbjct: 820 AVQSEKGDFR--VLALGTITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLK 877

Query: 734 FKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCM 775
           F+   +    G RG++K P G +G  + VF G +   D + +
Sbjct: 878 FEGASLKAVSGLRGQVKGPHGKNGEYRAVFEGKMLMSDIITL 919

Length = 1077

>gnl|CDD|129021 smart00785, AARP2CN, AARP2CN (NUC121) domain

 Score = 91.5 bits (228), Expect = 2e-22
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCN-SGKCTLLLHGYLRAHCLSVN 286
           E+   L      +     WR+Q P+++A +V+ + D+ +     TL+++GY+R   L+ N
Sbjct: 1   EILNLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDEEDPKVDRTLVVYGYVRGTGLNAN 60

Query: 287 QLVHISGAGDFQLGKIEILKDPF 309
           QLVHI G GDFQ+ KIE L DP 
Sbjct: 61  QLVHIPGLGDFQISKIEALPDPC 83

This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU. Length = 83

>gnl|CDD|219725 pfam08142, AARP2CN, AARP2CN (NUC121) domain

 Score = 81.8 bits (203), Expect = 5e-19
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQ 287
           E+   L      +     WR+QRP+++A +V+ +    +    T++++GY+R   L+ NQ
Sbjct: 1   EILNLLRFISVMKPRPLSWRDQRPYMLADRVEDITSPEDVRG-TVVVYGYVRGTGLNANQ 59

Query: 288 LVHISGAGDFQLGKIEILKDPF 309
           LVHI G GDFQ+ KIE L DP 
Sbjct: 60  LVHIPGVGDFQIDKIEALPDPC 81

This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU. Length = 81

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 75.5 bits (185), Expect = 6e-14
 Identities = 82/319 (25%), Positives = 131/319 (41%), Gaps = 46/319 (14%)

Query: 22  RNLHKTAAKDKSRIGKSDCNVAKGAKA-ARVQRNKMLRDQKRLALLKEKRASSGIAS--- 77
           +    + A+ K      D  V   AKA A     +M R   R A ++EK+    +     
Sbjct: 4   KKAKHSKAEKKKLKKVMDGKVGNNAKAFAVAAIGQMARQAMRTADIEEKKLHVPMVDRTP 63

Query: 78  ---PPRVIVLF----GLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQA 130
              PP  IV      G   S  + S+     +Q   E  G +  TV S K R R + L+ 
Sbjct: 64  KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPI--TVVSGKTR-RITFLEC 120

Query: 131 PHGDLVGCMEMAKVADLVAFVASAS-SFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI 189
           P  DL   +++AK+ADLV  +   +  F  E+M +         L++  S G+P    ++
Sbjct: 121 PS-DLHQMIDVAKIADLVLLLIDGNFGFEMETMEF---------LNILISHGMPRVLGVV 170

Query: 190 R--DLPTDLKKRKDLKKMCISSLTSEFPEDCKF----------YAADTKDELHKFLWLFK 237
              DL  +    + +KK       +E  +  K           Y       L +F+ + K
Sbjct: 171 THLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYPDREILNLSRFISVMK 230

Query: 238 EQRLTVPHWRNQRPFLMAQKVD-----VVADDCNSGKCTLLLHGYLRAHCL-SVNQLVHI 291
            + L    WRN  P+++A +VD     V  +        + ++GYL    L   +  VHI
Sbjct: 231 FRPL---EWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHI 287

Query: 292 SGAGDFQLGKIEILKDPFP 310
            G GDF++  +E+L DP P
Sbjct: 288 PGVGDFRMADVEVLIDPCP 306

Length = 1077

>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 55/237 (23%), Positives = 106/237 (44%), Gaps = 36/237 (15%)

Query: 42  VAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLL 101
           V    +AAR  +     ++K+L +    R  +    PP V+V+ G    V  +++   L+
Sbjct: 4   VQSAVRAARQFQRTQDLEEKKLHVPVVDR--TPEEPPPLVVVVVG-PPGVGKSTLIRSLI 60

Query: 102 RQLS----SEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASAS-S 156
           ++ +    S+  G +  T+ + K R R + ++ P+ D+   +++AK+ADLV  +   S  
Sbjct: 61  KRYTKQNLSDIKGPI--TIVTGKKR-RLTFIECPN-DINSMIDVAKIADLVLLLIDGSYG 116

Query: 157 FSEESMSYYIDSFGNQCLSVFRSLGLPST-AVLIR-DLPTDLKKRKDLKKMCISSLTSEF 214
           F  E+  +         L++ +  G P    VL   D   + K  +  KK       +E 
Sbjct: 117 FEMETFEF---------LNILQVHGFPKVMGVLTHLDKFKNNKTLRKTKKRLKHRFWTEV 167

Query: 215 PEDCK-FYAAD------TKDE---LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVV 261
            +  K FY +        K E   L +F+ + K + L    WRN  P+++A +++ +
Sbjct: 168 YDGAKLFYLSGIVHGRYPKTEILNLARFISVMKFRPLN---WRNSHPYVLADRMEDL 221

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 231

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	795
KOG1980	754	consensus Uncharacterized conserved protein [Funct	100.0
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	100.0
COG5177	769	Uncharacterized conserved protein [Function unknow	100.0
PF04950	297	DUF663: Protein of unknown function (DUF663); Inte	100.0
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.98
smart00785	83	AARP2CN AARP2CN (NUC121) domain. This domain is th	99.98
PF08142	85	AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012	99.97
PRK12735	396	elongation factor Tu; Reviewed	98.58
CHL00071	409	tufA elongation factor Tu	98.57
PRK12736	394	elongation factor Tu; Reviewed	98.53
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.52
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.41
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.4
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.4
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.39
PRK00049	396	elongation factor Tu; Reviewed	98.38
PLN03126	478	Elongation factor Tu; Provisional	98.37
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.37
PLN03127	447	Elongation factor Tu; Provisional	98.34
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.32
PTZ00141	446	elongation factor 1- alpha; Provisional	98.03
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.01
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.97
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	97.9
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.87
CHL00189	742	infB translation initiation factor 2; Provisional	97.74
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.67
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.65
PRK05306	787	infB translation initiation factor IF-2; Validated	97.64
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.63
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.6
PRK12317	425	elongation factor 1-alpha; Reviewed	97.57
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	97.51
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.49
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.42
PLN00043	447	elongation factor 1-alpha; Provisional	97.38
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	97.35
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	97.34
PRK10218	607	GTP-binding protein; Provisional	97.32
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.28
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.21
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.18
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	97.09
PRK05433	600	GTP-binding protein LepA; Provisional	97.03
PRK04004	586	translation initiation factor IF-2; Validated	97.01
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	96.97
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	96.92
PRK00089	292	era GTPase Era; Reviewed	96.9
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	96.89
PRK00093	435	GTP-binding protein Der; Reviewed	96.88
COG3276	447	SelB Selenocysteine-specific translation elongatio	96.84
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	96.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	96.72
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	96.68
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	96.54
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	96.52
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	96.46
cd00881	189	GTP_translation_factor GTP translation factor fami	96.41
PRK15494	339	era GTPase Era; Provisional	96.34
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	96.31
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	96.3
PRK14845	1049	translation initiation factor IF-2; Provisional	96.19
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	96.18
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	96.08
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.05
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	95.92
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	95.86
PRK12739	691	elongation factor G; Reviewed	95.79
PRK00007	693	elongation factor G; Reviewed	95.72
PRK13351	687	elongation factor G; Reviewed	95.61
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	95.56
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	95.44
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	95.4
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	95.39
COG1159	298	Era GTPase [General function prediction only]	95.25
PRK03003	472	GTP-binding protein Der; Reviewed	95.04
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	94.99
PRK00741	526	prfC peptide chain release factor 3; Provisional	94.97
PRK03003	472	GTP-binding protein Der; Reviewed	94.97
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	94.91
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	94.89
TIGR00503	527	prfC peptide chain release factor 3. This translat	94.88
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	94.65
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	94.63
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	94.61
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	94.52
PRK12740	668	elongation factor G; Reviewed	94.43
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	94.41
KOG1145	683	consensus Mitochondrial translation initiation fac	94.36
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	94.3
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	94.3
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	94.2
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	94.18
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	94.08
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	94.03
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	94.02
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	93.99
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	93.96
PRK12296	500	obgE GTPase CgtA; Reviewed	93.9
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	93.84
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	93.82
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	93.79
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	93.68
PRK12298	390	obgE GTPase CgtA; Reviewed	93.59
PTZ00416	836	elongation factor 2; Provisional	93.58
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	93.55
KOG0466	466	consensus Translation initiation factor 2, gamma s	93.53
COG1160	444	Predicted GTPases [General function prediction onl	93.37
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	93.32
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	93.23
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	92.88
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	92.88
smart00178	184	SAR Sar1p-like members of the Ras-family of small	92.8
PRK07560	731	elongation factor EF-2; Reviewed	92.66
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	92.64
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	92.31
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	92.3
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	92.23
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	92.22
PRK15467	158	ethanolamine utilization protein EutP; Provisional	92.03
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	91.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	91.93
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	91.91
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	91.8
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	91.76
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	91.75
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	91.61
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	91.61
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	91.58
PLN00116	843	translation elongation factor EF-2 subunit; Provis	91.43
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	91.4
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	91.38
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	91.33
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	91.29
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	91.2
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	91.13
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	91.03
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	90.95
PRK04213	201	GTP-binding protein; Provisional	90.94
PRK00093	435	GTP-binding protein Der; Reviewed	90.94
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	90.88
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	90.63
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	90.59
PTZ00133	182	ADP-ribosylation factor; Provisional	90.51
PRK09866	741	hypothetical protein; Provisional	90.51
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	90.4
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	90.05
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	89.96
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	89.83
PRK12299	335	obgE GTPase CgtA; Reviewed	89.8
PRK11058	426	GTPase HflX; Provisional	89.68
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	89.65
cd04105	203	SR_beta Signal recognition particle receptor, beta	89.58
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	89.53
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	89.5
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	89.24
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	88.91
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	88.9
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	88.88
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	88.79
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	88.63
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	88.62
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	88.58
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	88.18
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	88.06
PRK09435	332	membrane ATPase/protein kinase; Provisional	88.01
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	87.84
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	87.82
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	87.67
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	87.6
PLN03118	211	Rab family protein; Provisional	87.21
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	87.15
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	86.82
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	86.75
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	86.56
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	86.53
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	86.42
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	86.35
PTZ00369	189	Ras-like protein; Provisional	85.98
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	85.72
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	85.59
PRK12297	424	obgE GTPase CgtA; Reviewed	85.22
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	85.15
cd01896	233	DRG The developmentally regulated GTP-binding prot	85.13
cd01881	176	Obg_like The Obg-like subfamily consists of five w	84.99
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	84.9
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	84.5
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	84.4
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	84.34
COG1160	444	Predicted GTPases [General function prediction onl	84.33
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	84.11
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	83.94
COG2262	411	HflX GTPases [General function prediction only]	83.68
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	83.58
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	83.51
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	83.35
COG1163	365	DRG Predicted GTPase [General function prediction	83.34
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	83.17
COG0050	394	TufB GTPases - translation elongation factors [Tra	83.02
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	82.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	82.67
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	82.13
PLN00223	181	ADP-ribosylation factor; Provisional	81.89
COG1084	346	Predicted GTPase [General function prediction only	81.84
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	80.76

>KOG1980 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.4e-182  Score=1491.71  Aligned_cols=735  Identities=37%  Similarity=0.598  Sum_probs=634.3

Q ss_pred             CCcccCCCCCCCCCCChhhhhhhhhhcCCccccCccccccccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEE
Q 003796            3 GSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVI   82 (795)
Q Consensus         3 g~~kq~nK~hK~r~~sK~~~k~~~~~kg~~~~ka~~~~~~~~~~K~~Rr~~a~q~r~~Kr~~v~~~~R~~~~~~~pP~iV   82 (795)
                      |+||+.||+|||||+|||+++.  ..||+++.+..+.+..++.+|.+|||||+|+|+|||+.+++..|.+||.+++|++|
T Consensus         7 s~lk~~~k~~kskhrskg~l~~--~~kg~~~~~~~~~k~~~~~sk~~rrn~akqlr~qk~~~v~e~~~~~~g~n~a~~li   84 (754)
T KOG1980|consen    7 SPLKNANKPHKSKHRSKGALKR--DYKGKVELKPLGHKPDKTVSKLQRRNQAKQLRKQKREDVLENTRLLGGQNGAPKLI   84 (754)
T ss_pred             ccccccCccccccccccchhhh--hcCCcccccccCCCchhhhhHHHHHhHHHHHHHhHHHHHHHhhhhcccccccccee
Confidence            4899999999999999999998  99999999988888889999999999999999999999999999999999999999


Q ss_pred             EEecCCCccChhhHHHHHHHhhccCCCCCcceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCcccccc
Q 003796           83 VLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESM  162 (795)
Q Consensus        83 ~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~  162 (795)
                      +++||++.+++.++    +--..-.....+.+.+.++|||+|+.|+.|. .+++++||+|||||+|||+++|+       
T Consensus        85 ~~~pl~~~id~~~~----l~E~i~~~~~~~~i~~~i~rFK~~~~fl~P~-~n~~~~lD~~kv~D~~~f~~s~~-------  152 (754)
T KOG1980|consen   85 TGLPLKNQIDPLDI----LYEGIMVQEVDSKINVHIPRFKSNLKFLTPK-TNFLNILDAAKVSDFVVFLLSAV-------  152 (754)
T ss_pred             eccchhhhcchhhh----hhhhhccccCCccceecchhhhhceeeeccc-cchhhhhhhhhhcceeeeecchh-------
Confidence            99999999987666    2211111222378899999999999999996 99999999999999999999999       


Q ss_pred             ccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeCCHHHHHHHHHHHhhccc
Q 003796          163 SYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRL  241 (795)
Q Consensus       163 ~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~~~E~~nL~R~Is~~k~  241 (795)
                       +++|+||+.+++++++||+|++++|+.+|.. +.|++.++||.+.+++.++|+....|+.|+..+|.+||+|.||++++
T Consensus       153 -~~~~e~ge~i~~~~~~qGi~s~v~~v~~L~sv~~K~r~~vkK~l~~~~~k~f~s~~~v~~ld~~~dalnllR~l~~~k~  231 (754)
T KOG1980|consen  153 -EEDDEFGEQIIRALEAQGIPSYVSVVSDLSSVHEKFRLDVKKALEKRISKFFPSEKRVMRLDTSQDALNLLRGLCVQKP  231 (754)
T ss_pred             -hhhhHHHHHHHHHHhhcCCccceeeecccchhchhhhHHHHHHHHHHHHHhCCCcchheeccccchhHHHHHHhhhccc
Confidence             5699999999999999999999999776663 34999999999999999999988889999999999999999999999


Q ss_pred             cCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeecee-eccC---CCCCCCccccC
Q 003796          242 TVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKI-EILK---DPFPLNARKES  317 (795)
Q Consensus       242 r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I-~~~~---dP~p~~~~~~~  317 (795)
                      ++|.||++|+||+++-+++. .+.....|+|.+.|||||..||+|+||||||+|||||.+| ++..   ||.|+....+.
T Consensus       232 r~l~~rd~r~Yl~~~~vdf~-s~~s~~~gtL~i~G~vRG~~ln~NrLvHI~g~GDFqi~~I~~~p~~~qdp~~ik~~~~~  310 (754)
T KOG1980|consen  232 RVLHWRDNRGYLFADLVDFV-SELSYSEGTLVIFGYVRGQELNVNRLVHIPGFGDFQINKIDEAPIDGQDPKIIKKFIDL  310 (754)
T ss_pred             hheecccchhhhHHHhhhhc-cccCCCcceEEEEEEeecccccccceEeecCccceeEEEeecCCcccCCCcccCccCCC
Confidence            99999999999999988885 2224557999999999999999999999999999999999 4444   78777654331


Q ss_pred             Ccccccccccceeeeec-CCCCCCCccccccCCCCCccCCCCCCChhhhhhHhhhhhhhhcccccCCCCCchhhhccccC
Q 003796          318 DAMESDEIHDLEVIRTL-SPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVD  396 (795)
Q Consensus       318 ~~m~~~~~~~~~~~~~l-~~~~~~~~~L~~e~~~d~~~~eqt~pteee~~~~~~~~~~~~~~k~~vpkg~s~yqa~w~~d  396 (795)
                      .       -.   ..+. ..+|.++.+|.++..||+|+.||+|||++|...++.+...++..++ ||||||+|||+||.|
T Consensus       311 s-------~e---~~i~~qsdpd~~~~l~~~~~pD~md~e~~~~t~de~~~~~~~~~~~~~~~~-VPKg~S~yqa~wi~d  379 (754)
T KOG1980|consen  311 S-------LE---FCISTQSDPDKADSLESEHTPDDMDVEQDWPTRDESNVAIKETEPMKRPKR-VPKGTSDYQAAWILD  379 (754)
T ss_pred             C-------cc---eeeecccChhHhhhhhhcCCCchhhhhccccchhhhhhhccccchhccccc-cCCCccccceeeecC
Confidence            1       11   2333 6677889999999999999999999999998877665544555566 999999999999999


Q ss_pred             CCCcCCCCCCCCccCCcccccccCCCCCCCCCCCCCCcchhhccccCccCCCCccccccccCCCCCHHH-HHHHHHHHHh
Q 003796          397 DSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQ-IEDEIKKIKE  475 (795)
Q Consensus       397 ~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~-e~~~~~~~~~  475 (795)
                      +++++|.  .++.++.|++.++.  ++++    +++.|+   ..++.+.+...+..+++.+|+.+++++ +.++++++++
T Consensus       380 e~~~~dk--~d~~ed~~m~ied~--~~de----~~~~EE---~~ds~~~~~~~~~~~d~~~D~~~dee~re~~e~~k~~k  448 (754)
T KOG1980|consen  380 EEEESDK--EDDNEDTEMEIEDE--FEDE----DSDEEE---LRDSIEAGGTEAEESDGFYDESSDEEARESEELEKYQK  448 (754)
T ss_pred             Ccccccc--cccccchhhhhhhh--hhhc----cccchh---hhccccccccchhhccccccccchhhHHhHHHHHHHHH
Confidence            6554322  12222222111110  0000    001000   001111111011223445667777766 6677888877


Q ss_pred             hcccCCCCCCCCCCCCCchHHHHHHHHhccccccCCCCCCCCCCchHHhhhhchhcHHHHHHHHHHHHhhhhccccCCCC
Q 003796          476 AHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSV  555 (795)
Q Consensus       476 ~~~ed~~fpDEvdtp~d~~ar~Rf~kyRgLkSfrts~Wd~~E~lp~~y~ri~~f~~~~~~~k~~~~~~~~~~~~~~~~g~  555 (795)
                      + +++.+||||||||++.+||+||+|||||||||||+||++||||.+|+|||+|+||.+|+|+++++..+.     .++ 
T Consensus       449 e-r~e~~fPDEvdt~~d~~ArerfqkYRGLksl~Ts~Wd~~En~P~dy~rlfqF~Nyrntkk~i~kk~~~e-----~~~-  521 (754)
T KOG1980|consen  449 E-REESEFPDEVDTPPDESARERFQKYRGLKSLRTSPWDAKENLPADYARLFQFQNYRNTKKRILKKEDNE-----AEA-  521 (754)
T ss_pred             H-hHhhhCCCccccCCChHHHHHHHHhccccccccCCCcccccCcHHHHHHHhhhhhhhHHHHhhhhcccc-----ccc-
Confidence            7 778899999999999999999999999999999999999999999999999999999999999973221     122 


Q ss_pred             CCCcEEEEEEecCchhHHhhhccccCCCcEEEEecccccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeeeeeeeee
Q 003796          556 PASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIF  635 (795)
Q Consensus       556 ~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~~Pif  635 (795)
                      .+|+||||+|+|||.++++.|.+.   .+|||+|||||||||+|+||.++||+.|+.||||+++|||+||+|||.++|+|
T Consensus       522 ~~G~~V~v~l~nvP~~i~E~~~~~---~~lvvfglL~hEhKmtV~Nfvl~r~p~~e~Plkske~livq~G~Rrf~i~Plf  598 (754)
T KOG1980|consen  522 IPGQYVRVFLRNVPVSILEAIKKQ---LLLVVFGLLPHEHKMTVLNFVLQRHPGYEEPLKSKEELIVQCGFRRFDINPLF  598 (754)
T ss_pred             CCCceEEEEeecCcHHHHHHHhhc---cceeeeeccchhhhheeeEEEEecCCCCCccccccceeEEEeccceEEecccc
Confidence            699999999999999999999866   89999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCceEEecccCCCceEEEEEEeecCCCCccEEEEEeCCCCCCCeEEEEeEEeccCCcceeEEeEEEEeeeeEEe
Q 003796          636 SSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVS  715 (795)
Q Consensus       636 S~~~~~~~r~k~~ky~~~~~~~~AtfygPi~~~~t~vl~f~~~~~~~~~ri~atG~vl~~d~~r~IvKklkLtG~P~KI~  715 (795)
                      |+ +++|++|||+||+|+.++.+|||||||+|||+|||+|+..++ ++.+++|||+++++||+|+|+||.||+|||||||
T Consensus       599 Ss-~t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK~s~~-~~~~LiAtG~~l~~dpdRiv~KRaVLsGhPfKi~  676 (754)
T KOG1980|consen  599 SS-HTPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFKKSSD-GSLELIATGSLLNCDPDRIVAKRAVLSGHPFKIH  676 (754)
T ss_pred             cc-CCccchhhhhhhcCccceEEEEEEeccccCCcceEEEEeCCC-cccceeeeeeeeccCCcceeEeeeeecCCCceee
Confidence            98 889999999999999999999999999999999999999988 7999999999999999999999999999999999


Q ss_pred             eeeEEEeecCCChhhccccccceeeecccccceeeCCCCCCceeEEEeccccccccEEEEecceeeccCCCC
Q 003796          716 KLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPE  787 (795)
Q Consensus       716 K~tA~Ir~MF~n~~dV~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~~D~V~m~lykrv~Pkw~~  787 (795)
                      |+.|+|||||||+|||.||||++|+|++||+|||||||||||||||+|++||+.+|+|+|+|||||||+|++
T Consensus       677 kk~v~VRYMFFn~EDV~wFKpIqL~Tk~gR~GhIKEplGTHG~fKc~FdgkLksqDtV~MsLYKRvfP~~~y  748 (754)
T KOG1980|consen  677 KKYVVVRYMFFNREDVEWFKPIQLYTKSGRTGHIKEPLGTHGYFKCYFDGKLKSQDTVMMSLYKRVFPKWTY  748 (754)
T ss_pred             eeeEEEeeecCCHhHeeeecceeeeccccccccccccccCcceeEEEecCcccccchHHHHHHHhhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-144  Score=1178.21  Aligned_cols=715  Identities=23%  Similarity=0.350  Sum_probs=499.0

Q ss_pred             ccccCccccccccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC
Q 003796           32 KSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA  111 (795)
Q Consensus        32 ~~~ka~~~~~~~~~~K~~Rr~~a~q~r~~Kr~~v~~~~R~~~~~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~  111 (795)
                      .|+|||+..+   ..+.+|..++..+..+|++|||+++|++. ..|||+||||||||+++.. .|+..||+.||++....
T Consensus        26 ~naKafavAa---~G~mar~~~rtadi~ekklhVPmvdrtp~-d~PPPfIvavvGPpGtGKs-TLirSlVrr~tk~ti~~  100 (1077)
T COG5192          26 NNAKAFAVAA---IGQMARQAMRTADIEEKKLHVPMVDRTPK-DLPPPFIVAVVGPPGTGKS-TLIRSLVRRFTKQTIDE  100 (1077)
T ss_pred             cchhhhhhhc---hHHHHHHHhhccchhhhccccccccCCcc-cCCCCeEEEeecCCCCChh-HHHHHHHHHHHHhhhhc
Confidence            4688888776   45666666668899999999999999974 6899999999999996653 44444499999988776


Q ss_pred             --cceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEe
Q 003796          112 --LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI  189 (795)
Q Consensus       112 --g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl  189 (795)
                        |||||+++ ++|||||+||| +||++|||+|||||||||+|||.||        |||||+||||+|+.||||+|+||+
T Consensus       101 i~GPiTvvsg-K~RRiTflEcp-~Dl~~miDvaKIaDLVlLlIdgnfG--------fEMETmEFLnil~~HGmPrvlgV~  170 (1077)
T COG5192         101 IRGPITVVSG-KTRRITFLECP-SDLHQMIDVAKIADLVLLLIDGNFG--------FEMETMEFLNILISHGMPRVLGVV  170 (1077)
T ss_pred             cCCceEEeec-ceeEEEEEeCh-HHHHHHHhHHHhhheeEEEeccccC--------ceehHHHHHHHHhhcCCCceEEEE
Confidence              99999998 58999999999 9999999999999999999999998        999999999999999999999999


Q ss_pred             ccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeCC-------HHHHHHHHHHHhhccccCcccccCCCeEEEEeeE
Q 003796          190 RDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAADT-------KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVD  259 (795)
Q Consensus       190 ~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~l~~-------~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e  259 (795)
                      ||||. +|+   .+..||+||||||+|+|+|+|||||++       .+||+||+||||+||+|||.||+.||||||||++
T Consensus       171 ThlDl-fk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~nGRYpDreilnLsRfisVMKfRPl~Wrn~HPy~laDR~~  249 (1077)
T COG5192         171 THLDL-FKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYPDREILNLSRFISVMKFRPLEWRNMHPYVLADRVD  249 (1077)
T ss_pred             eeccc-ccChHHHHHHHHHHhhhHHHHHcCCceEEEecccccCCCCCHHHHHHHHHHhhhcccccccccCCceeehhhhc
Confidence            99997 344   456899999999999999999999994       8999999999999999999999999999999999


Q ss_pred             eccCC-----CCCCCceEEEEEEEeCCCCC-CCCeEEeCCCCceeeceeeccCCCCCCCccc------------------
Q 003796          260 VVADD-----CNSGKCTLLLHGYLRAHCLS-VNQLVHISGAGDFQLGKIEILKDPFPLNARK------------------  315 (795)
Q Consensus       260 ~~~~~-----~~~~~~~l~v~GyvRG~~l~-~n~lVHIpG~GDfqi~~I~~~~dP~p~~~~~------------------  315 (795)
                      +.+-+     +..-.+.++|||||+|++|. ...-|||||+|||.+++|+.|+||||-+...                  
T Consensus       250 Dlt~p~~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L~DPcPp~~a~~~rrRrLs~k~KliY~PM  329 (1077)
T COG5192         250 DLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVLIDPCPPPDADHGRRRRLSLKSKLIYSPM  329 (1077)
T ss_pred             cccchhhhhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhhcCCCCCCCcccchhhcccchhhceeeccc
Confidence            85321     13447899999999999995 7888999999999999999999999954321                  


Q ss_pred             --------cCCcccccccccceeeeecCCCCCCCcc------------ccccCCCCC-c--cCCCCCCChhhhhhHhhh-
Q 003796          316 --------ESDAMESDEIHDLEVIRTLSPDPLKLEP------------LLVENVPDP-L--AGEQTWPTEAEMAEADQN-  371 (795)
Q Consensus       316 --------~~~~m~~~~~~~~~~~~~l~~~~~~~~~------------L~~e~~~d~-~--~~eqt~pteee~~~~~~~-  371 (795)
                              |+|+++++-         -..+++..+.            |+ +..-++ .  .+-|.|...+-+.-.+-+ 
T Consensus       330 sdiGGil~dKD~vyiev---------~~~n~s~~~~~eaGegekm~~~lq-~~eq~~g~dgvglqlFsnsd~~d~~d~e~  399 (1077)
T COG5192         330 SDIGGILKDKDRVYIEV---------PTSNFSKDENSEAGEGEKMKMQLQ-EIEQDPGVDGVGLQLFSNSDAIDTVDRES  399 (1077)
T ss_pred             ccccceeecccceeeec---------cccCcCcCcccccchhhHHHHHHh-hhccCCCcCceeeEEecCCcchhhccccc
Confidence                    223333210         0111111111            11 000011 0  233444432222111111 


Q ss_pred             ----hhhhhcccccCCCCCchhhhccccCCCCcCCCCCCCCccCCcccccc--cCCCCCCCCCCCCCCcc---hhhcc-c
Q 003796          372 ----QKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQE--DRGFPGYEGTNNSDIDD---DQASL-N  441 (795)
Q Consensus       372 ----~~~~~~~k~~vpkg~s~yqa~w~~d~~~~~~~~~~~e~~d~~~~~~~--~~~~~~~~~~~~s~~~~---~~~~~-~  441 (795)
                          +..++ .++ -|.|-.--|.---.|+..-++++-. -+|+..+++-.  ...++...+   ++.+.   |.++. +
T Consensus       400 ~eid~~gr~-t~r-qp~Gk~i~eE~~~~Del~~dd~~~~-~~De~ed~d~~~~~~~~nn~~e---~~~e~~a~dsDSqfd  473 (1077)
T COG5192         400 SEIDNVGRK-TRR-QPTGKAIAEETSREDELSFDDSDVS-TSDENEDVDFTGKKGAINNEDE---SDNEEVAFDSDSQFD  473 (1077)
T ss_pred             ccccccccc-ccc-CCCCcchhhhhccccccCccccccc-ccccccccccccccccccCccc---ccchhhccccccccc
Confidence                11111 222 5666311110000111110000000 01111111100  000000000   00000   00000 0


Q ss_pred             cCccC---CCCc--------------cccccccCCCCCHHHHHHHHHHHHhh-----------cccCCCCCC---CC--C
Q 003796          442 FRYAD---DGTE--------------NDSVMMEGEILTREQIEDEIKKIKEA-----------HAEDEEFPD---EV--D  488 (795)
Q Consensus       442 ~e~~~---~~~~--------------~~~~~~~~~~~~~e~e~~~~~~~~~~-----------~~ed~~fpD---Ev--d  488 (795)
                      +++.+   .++.              +-...+|++.+++++-   +++|+-+           +.++++|=+   +-  +
T Consensus       474 ese~~~~w~~~~a~kl~~sqs~kr~~ni~ki~y~e~lspeec---i~e~kge~~~s~e~~~v~~D~~edff~vsk~~n~~  550 (1077)
T COG5192         474 ESEGNLRWKEGLASKLAYSQSGKRGRNIQKIFYDESLSPEEC---IEEYKGESAKSSESDLVVQDEPEDFFDVSKVANES  550 (1077)
T ss_pred             cccccchhhhhhhhhhhhhhcccccccccceeccccCCHHHH---HHHhccccccccccccccccCchhhhhhhhhcccc
Confidence            00000   0000              0001246666666652   2222211           011111111   00  0


Q ss_pred             CCCC-------c------------hHHHHHHHHhcccccc----------CCCCCC---CCCC-----------------
Q 003796          489 TPLD-------V------------PARKRFAKYRGLKSFR----------TSSWDP---KESL-----------------  519 (795)
Q Consensus       489 tp~d-------~------------~ar~Rf~kyRgLkSfr----------ts~Wd~---~E~l-----------------  519 (795)
                      ...|       .            ...+||++---|.|.-          .+++..   +||-                 
T Consensus       551 ~s~~~ek~~~~~fe~L~kkw~s~~~lk~RF~~~~~lds~eg~EEl~qd~E~gn~ed~~d~e~~~d~e~ees~G~s~t~~~  630 (1077)
T COG5192         551 ISSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAEN  630 (1077)
T ss_pred             cccchhhhchhHHHHHHHHHhhHHHHHHHhhcccccccccchhhhhhchhccCcccccccccccccchhhccCCcccccc
Confidence            0000       0            0112222211111110          000000   0000                 


Q ss_pred             -----chHHh--h----------hhchh--c-----------HHHHHHHHHHH-------Hhhhhc--cccCCCCCCCcE
Q 003796          520 -----PPEYA--R----------IFAFD--K-----------FTRTQKHVFAN-------ALKMEQ--ENMDDSVPASLY  560 (795)
Q Consensus       520 -----p~~y~--r----------i~~f~--~-----------~~~~~k~~~~~-------~~~~~~--~~~~~g~~~G~y  560 (795)
                           -.+|.  |          -.+|+  .           |...++++-++       +++|+.  +..++|+++|.|
T Consensus       631 ~e~~~e~~~e~ErE~na~kKE~lr~~Fe~eer~d~e~~d~dwy~~eK~ki~~ql~inr~e~e~M~Pe~r~~Ieg~raG~Y  710 (1077)
T COG5192         631 EESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRY  710 (1077)
T ss_pred             hhhccccchHHHhhhhhhhhhhhhcceeehhccCccccccchHHHHHHHHHHHHhhhhhhhhhcCCcceeEeecccccce
Confidence                 00010  0          00111  1           22223333222       233333  456899999999


Q ss_pred             EEEEEecCchhHHhhhccccCCCcEEEEecccccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeeeeeeeeeccCCC
Q 003796          561 VRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNM  640 (795)
Q Consensus       561 Vri~i~~vp~~~~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~~PifS~~~~  640 (795)
                      |||+|+.||.+|+++|++.   +|+|+|||||.|.+||+|+.+|+|||||+++||++||||||+||||||++||||+.|.
T Consensus       711 Vriv~~~vP~efv~~fn~r---~piV~GGlLp~E~~~giVq~rikrhrWhKKILKTNdPlifS~GWRRFQsiPvys~~Ds  787 (1077)
T COG5192         711 VRIVLSHVPLEFVDEFNSR---YPIVLGGLLPAEKEMGIVQGRIKRHRWHKKILKTNDPLIFSVGWRRFQSIPVYSMKDS  787 (1077)
T ss_pred             EEEEeccCCHHHHhhcCCC---CcEEeccccchhhhhhhhhhHHHHhHHHHHHhccCCCeEEEechhhhcccceeeecch
Confidence            9999999999999999998   9999999999999999999999999999999999999999999999999999999664


Q ss_pred             CCCceEEecccCCCceEEEEEEeecCCCCccEEEEEeCCCCCCCeEEEEeEEeccCCcceeEEeEEEEeeeeEEeeeeEE
Q 003796          641 NSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI  720 (795)
Q Consensus       641 ~~~r~k~~ky~~~~~~~~AtfygPi~~~~t~vl~f~~~~~~~~~ri~atG~vl~~d~~r~IvKklkLtG~P~KI~K~tA~  720 (795)
                       .+|+||+||||+||||.+|||||+++||||||++|+..  +.|||+|+|+|.++|.+..|||||||+|||++|++||||
T Consensus       788 -rTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse~--g~frv~a~g~i~dv~~~~~lvkklklvg~p~qi~qnt~f  864 (1077)
T COG5192         788 -RTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSEK--GDFRVLALGTITDVNGDAKLVKKLKLVGYPKQIVQNTVF  864 (1077)
T ss_pred             -hhhhhhhhcCccceeeeeeeecCccCCCCCceeEEecC--CceEEEEeeeeEeccccHHHHhhhhhccCcHHHhhhhHh
Confidence             47999999999999999999999999999999999864  679999999999999999999999999999999999999


Q ss_pred             EeecCCChhhccccccceeeecccccceeeCCCCCCceeEEEeccccccccEEEEecceeeccCCCC
Q 003796          721 VRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPE  787 (795)
Q Consensus       721 Ir~MF~n~~dV~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~~D~V~m~lykrv~Pkw~~  787 (795)
                      ||+||+|.+||++|+||+|+||||+||+||.|+|.+|++||.|+++|+|||||.||+|.+|--+-++
T Consensus       865 vrdmfts~lev~kfega~lk~vsglrgqvk~~~~k~g~yra~fe~kmlmsdii~lr~~~pv~v~r~~  931 (1077)
T COG5192         865 VRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHGKNGEYRAVFEGKMLMSDIITLRCFVPVEVHRIF  931 (1077)
T ss_pred             HHHhhhhhhHHHhhcccceeeeccccccccCccCCCccchheeccchhhhheeeEEeeeeeEEEEee
Confidence            9999999999999999999999999999999999999999999999999999999999888655444

>COG5177 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.5e-138  Score=1113.99  Aligned_cols=727  Identities=26%  Similarity=0.400  Sum_probs=586.0

Q ss_pred             CcccCCCCCCCCCCChhhhhhhhhhcCCcccc-CccccccccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEE
Q 003796            4 SRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRI-GKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVI   82 (795)
Q Consensus         4 ~~kq~nK~hK~r~~sK~~~k~~~~~kg~~~~k-a~~~~~~~~~~K~~Rr~~a~q~r~~Kr~~v~~~~R~~~~~~~pP~iV   82 (795)
                      +|| .||+||++|+|||++|+  +.||++++- ..+.+..++++|++|||+|+|++.+++..+.+.+|.++|.++||.||
T Consensus         8 s~k-~~k~ykskhask~alk~--~yk~kve~~~~g~~~~~~~~~k~dRrN~aKq~~~~~i~~~~en~~~f~gknGa~kvI   84 (769)
T COG5177           8 SLK-GHKSYKSKHASKGALKR--LYKGKVEKEPVGTGKPDKQMKKRDRRNRAKQKSIGSIARIKENKLPFSGKNGAYKVI   84 (769)
T ss_pred             hhc-cCCcccccccchhHHHH--HhcCCccccCCCCCCchhhhHHhhhhhhHHHhhhhHHHHHHhhcCcccCCCCCceEE
Confidence            566 88999999999999998  999998864 34566678999999999999999999999999999999999999999


Q ss_pred             EEecCCCccChhhHHHHHHHhhccCCCCC---------cceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeee
Q 003796           83 VLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVAS  153 (795)
Q Consensus        83 ~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---------g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~id  153 (795)
                      +||||+..++...+.   -+++...+.+.         -.+.+.+.+||+++.|+.|..-++.+++|+|||||+|+|+++
T Consensus        85 tIVpL~n~~d~~dil---~klL~~~d~e~~m~q~~~~~~~ys~~i~~fK~Nllf~~pd~~~f~~l~d~ckVsD~VvF~ls  161 (769)
T COG5177          85 TIVPLGNECDGYDIL---DKLLHGNDDEGIMVQEVDGGLFYSVHIEEFKMNLLFKRPDELSFFQLGDVCKVSDIVVFGLS  161 (769)
T ss_pred             EEeecccccchHHHH---HHHHccCCcccccceeccCceEEeeeHHHhhcceeEeccchhhhhhhhhhheeccEEEEEec
Confidence            999999999987772   33443333221         235566789999999999987779999999999999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhHHHHHHHHhhcccccCCCCeeEEeCCHHHHHH
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHK  231 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~~~E~~n  231 (795)
                      +.        +++|+.|+.+.+.|+.||+.++|+++..|..  ..|.+..+|++|++++.++||+..++|.++..+|++|
T Consensus       162 ~v--------qEVDefge~i~r~l~~qgI~s~i~~~~~ls~v~s~k~~~~vKqslesf~~~fFp~~ERV~~~~~~~DALn  233 (769)
T COG5177         162 DV--------QEVDEFGEQIGRKLKLQGIKSFIPSCLFLSSVQSEKRDAAVKQSLESFVRRFFPSKERVVEIGGLMDALN  233 (769)
T ss_pred             ch--------hhhhHHHHHHHHHHHhhhHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCchhheeeccccHHHHH
Confidence            98        5699999999999999999999999655542  2377889999999999999999999999999999999


Q ss_pred             HHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCC
Q 003796          232 FLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPL  311 (795)
Q Consensus       232 L~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~dP~p~  311 (795)
                      .+|.+|+.-||.|.||++|||+|+....+.       +|.|.+.|.|||.+|++|+|+||||+|||++.+|...+.-   
T Consensus       234 v~R~lcts~pR~i~wrdnR~Yiv~~e~sys-------~G~l~~~g~VrG~g~n~nrL~Hi~~fgdF~~nkI~~~~q~---  303 (769)
T COG5177         234 VVRILCTSVPRSINWRDNRPYIVPSEASYS-------DGELFYEGTVRGIGFNANRLKHIPDFGDFLSNKIIVNGQY---  303 (769)
T ss_pred             HHHHHhccCCcccccccCCceeeecccccC-------CCceEEEEEeeccccCchheeecCccchhhhheeeeccch---
Confidence            999999999999999999999999665543       5899999999999999999999999999999999887531   


Q ss_pred             CccccCCcccccc--cccceeeeecCCCCCCCccccccCCCCCccCCCCCCC-hhhhhhH-------------hhhhhhh
Q 003796          312 NARKESDAMESDE--IHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPT-EAEMAEA-------------DQNQKHR  375 (795)
Q Consensus       312 ~~~~~~~~m~~~~--~~~~~~~~~l~~~~~~~~~L~~e~~~d~~~~eqt~pt-eee~~~~-------------~~~~~~~  375 (795)
                        .+.....-.|.  .-...+..++.++ ..|++|.. ..|.   ++..|.. +++.+.+             +.+.+..
T Consensus       304 --~q~~r~I~~d~at~l~~~l~~v~~~~-~~rdtld~-~~p~---g~d~~sd~d~d~~~d~~~~vr~Dd~~f~~~~eq~~  376 (769)
T COG5177         304 --EQTIREIFADRATKLELDLQTVFESN-MNRDTLDE-YAPE---GEDLRSDYDEDFEYDGLTTVRIDDHGFLPGREQTS  376 (769)
T ss_pred             --hhhHHHHhhhhccccccchhhhcccc-ccccchhh-cCCc---cccchhhhhhhhcccccceeEecccccCCcccccc
Confidence              11100000111  0011112222322 33445542 2221   2333422 1222211             0011111


Q ss_pred             hcccccCCCCCchhhhccccCCCCcCCCCCCCCccCCcccccccCCCCCCCCCCCCCCcchhhccccCccCCCCcccccc
Q 003796          376 KQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVM  455 (795)
Q Consensus       376 ~~~k~~vpkg~s~yqa~w~~d~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~  455 (795)
                      +  +-+||||||.|||.|+.|++.+++...+.| +-.+.+++++....+     +++++    ++++     .++.++++
T Consensus       377 ~--~aavpkGts~yqa~w~~deeee~~q~nd~e-~tm~~idd~d~~E~d-----neev~----~DeE-----~~idDne~  439 (769)
T COG5177         377 K--KAAVPKGTSFYQAKWAEDEEEEDGQCNDEE-STMSAIDDDDPKEND-----NEEVA----GDEE-----SAIDDNEG  439 (769)
T ss_pred             h--hhccCCCCcccceeecccchhhccccCchh-hhhhhhcccCchhcc-----ccccc----Cchh-----hccccccc
Confidence            1  112999999999999998654433221111 111111111000000     00000    0011     11112232


Q ss_pred             ccCCCCCHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchHHHHHHHHhccccccCCCCCCCC---CCchHHhhhhchhcH
Q 003796          456 MEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDKF  532 (795)
Q Consensus       456 ~~~~~~~~e~e~~~~~~~~~~~~ed~~fpDEvdtp~d~~ar~Rf~kyRgLkSfrts~Wd~~E---~lp~~y~ri~~f~~~  532 (795)
                        .+++++|||.+|++++|..++||.+||||+++.+...|++||.+||||+++-||.|+..|   +.|.+|.+++.|+||
T Consensus       440 --f~els~eee~rq~~efr~~eked~efpde~elqPse~aier~k~YRGlrnLytc~w~~de~dps~P~ewk~L~~f~ny  517 (769)
T COG5177         440 --FEELSPEEEERQLREFRDMEKEDREFPDEAELQPSESAIERYKEYRGLRNLYTCSWRSDEKDPSFPEEWKSLVFFDNY  517 (769)
T ss_pred             --chhcChHHHHHHHHHHHhhhhhhccCchhhccCccHHHHHHHHHhcccccccccccccccCCCCChHHHhhheeccch
Confidence              378999999999999999779999999999999999999999999999999999999766   579999999999999


Q ss_pred             HHHHHHHHHHHhhhhccccCCCCCCCcEEEEEEecCchhHHhhhccccCCCcEEEEecccccceeeEEEEEEEecCCCcc
Q 003796          533 TRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDA  612 (795)
Q Consensus       533 ~~~~k~~~~~~~~~~~~~~~~g~~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~  612 (795)
                      ++++++++++--+       ....+|+.|||.|+ +|..+++.+...  ..-|+|+|||.||+|.+|.||+++||..|++
T Consensus       518 rn~kn~~vk~~~~-------~~a~~G~~vri~lr-~p~~l~E~~~~p--~~llvvygll~yE~k~tV~nFs~~rh~eye~  587 (769)
T COG5177         518 RNAKNLVVKKDNE-------SVAPDGQMVRIKLR-FPKFLYEGLIEP--QILLVVYGLLEYEDKKTVHNFSLQRHFEYEV  587 (769)
T ss_pred             hhhhhheecCCcc-------ccCCCCcEEEEEEe-ccHHHHhhhccc--ceeeeeeehhhhcchhhhhhhhhhhhhcccC
Confidence            9999999875421       34789999999998 999999998755  2567789999999999999999999999999


Q ss_pred             cCCCCCeEEEEeeeeeeeeeeeeccC-CCCCCceEEecccCCCceEEEEEEeecCCCCccEEEEEeCCCC-CCCeEEEEe
Q 003796          613 PIKAKEELIFHVGFRQFVARPIFSSD-NMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGG-VAPAVAAVG  690 (795)
Q Consensus       613 ~lKSkdpLi~s~GwRRFq~~PifS~~-~~~~~r~k~~ky~~~~~~~~AtfygPi~~~~t~vl~f~~~~~~-~~~ri~atG  690 (795)
                      ||+|+++|++|+|.|||.++|+||+. +..|+-|||.||+|+....||||+|||.|++.|+|+|+..... .+.+++|||
T Consensus       588 P~~s~E~~vvq~G~rr~~i~Pl~s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg~spvi~fkkS~~d~~s~~l~a~g  667 (769)
T COG5177         588 PLKSEESMVVQLGHRRVDICPLISKGSNSPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASG  667 (769)
T ss_pred             CCCcccceeeeeccceEEEeehhccCCCCCcchHHHHhhcCccceeeeEEEcceeccCcceEEEccCccchhhhhhhhcc
Confidence            99999999999999999999999983 3446799999999999999999999999999999999987432 689999999


Q ss_pred             EEeccCCcceeEEeEEEEeeeeEEeeeeEEEeecCCChhhccccccceeeecccccceeeCCCCCCceeEEEeccccccc
Q 003796          691 SLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQR  770 (795)
Q Consensus       691 ~vl~~d~~r~IvKklkLtG~P~KI~K~tA~Ir~MF~n~~dV~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~~  770 (795)
                      +.+++|++|+|+||.+|||||||+||+.++||||||||+||.||++++|+|++||.|.|||||||||||||||+++|+.+
T Consensus       668 ~~~n~d~~rviakrAvLtGhPFk~hK~~vtvryMFf~pEdV~wFk~Iqlftk~grtGfIKeplGThGyFKatF~gki~~q  747 (769)
T COG5177         668 GMNNFDGDRVIAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPLGTHGYFKATFSGKIKSQ  747 (769)
T ss_pred             cccccCcchhhhhhhhhcCCCcccceeEEEEeeecCCHhHeeeecchhhhhhcCccceecccccCcceeeEEecCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEecceeeccCCCCCCCC
Q 003796          771 DTVCMSLYKRAYPKWPEHRFP  791 (795)
Q Consensus       771 D~V~m~lykrv~Pkw~~~~~~  791 (795)
                      |+|.|+||||+||-- ..||+
T Consensus       748 D~VaMSLYKRm~p~p-~~~~~  767 (769)
T COG5177         748 DKVAMSLYKRMFPEP-QLPWN  767 (769)
T ss_pred             chhhHHHHHHhccCc-ccccC
Confidence            999999999999963 34554

>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus

Probab=100.00  E-value=5.5e-108  Score=876.50  Aligned_cols=292  Identities=50%  Similarity=0.879  Sum_probs=78.4

Q ss_pred             CCCCCCCchHHHHHHHHhccccccCCCCCCCC---CCchHHhhhhchhcHHHHHHHHHHHH-hhhhccccCCCCCCCcEE
Q 003796          486 EVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDKFTRTQKHVFANA-LKMEQENMDDSVPASLYV  561 (795)
Q Consensus       486 Evdtp~d~~ar~Rf~kyRgLkSfrts~Wd~~E---~lp~~y~ri~~f~~~~~~~k~~~~~~-~~~~~~~~~~g~~~G~yV  561 (795)
                      |||||.|++||+||+|||||||||||+||++|   +||.+|+|||+|+||+++++++++++ .+.+.+.+.+|+.||+||
T Consensus         1 Evdt~~~~~ar~Rf~KyRgLKs~r~s~wD~~E~~~~lP~~y~ri~~f~n~~~~k~~~~~~~~~~~~~~~~~~g~~~G~YV   80 (297)
T PF04950_consen    1 EVDTPPDEPARERFQKYRGLKSFRTSEWDPDEKDPNLPEDYSRIFQFENFKRTKKRALKEAELDEEEREQEEGVRPGTYV   80 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999   99999999999999999999998875 222224456899999999


Q ss_pred             EEEEecCchhHHhhhccccCCCcEEEEecccccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeeeeeeeeeccCCCC
Q 003796          562 RLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMN  641 (795)
Q Consensus       562 ri~i~~vp~~~~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~~PifS~~~~~  641 (795)
                      +|+|++||++++++|++.   +||||||||+||+|+||||++|+||+||++|||||||||||||||||||+||||+ +++
T Consensus        81 rI~i~~vP~~~~~~~~~~---~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lkSkd~li~~~G~Rrf~~~Pifs~-~~~  156 (297)
T PF04950_consen   81 RIEISNVPCEFVENFDPS---YPLILGGLLPHEQKMSVVNFRIKRHRWYEKPLKSKDPLIFSCGWRRFQTIPIFSQ-EDN  156 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            999999999999999998   9999999999999999999999999999999999999999999999999999999 556


Q ss_pred             CCceEEecccCCCceEEEEEEeecCCCCccEEEEEeCCCCC-CCeEEEEeEEeccCCcceeEEeEEEEeeeeEEeeeeEE
Q 003796          642 SDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGV-APAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI  720 (795)
Q Consensus       642 ~~r~k~~ky~~~~~~~~AtfygPi~~~~t~vl~f~~~~~~~-~~ri~atG~vl~~d~~r~IvKklkLtG~P~KI~K~tA~  720 (795)
                      ++||||+||||+|+||+||||||++|||||||+|++.++.+ +|||+|||+|+++||+++|+|||+|+||||||||||||
T Consensus       157 ~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k~~a~  236 (297)
T PF04950_consen  157 NNRHKYEKYLPEGMHCVATFYGPITFPPTPVLAFKESSNSGSSFRLVATGSVLNVDPDRIIVKKIKLTGYPFKIHKRTAV  236 (297)
T ss_dssp             ---------------------------------------TTTSS-B-EEEEEEEE--GGGS-B--EEEEEEEEEESSSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCCceEEEeeeEeCCCCcchhheeeeecCchheEECceEE
Confidence            78999999999999999999999999999999999964433 79999999999999999999999999999999999999


Q ss_pred             EeecCCChhhccccccceeeecccccceeeCCCCCCceeEEEeccccccccEEEEecceee
Q 003796          721 VRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRA  781 (795)
Q Consensus       721 Ir~MF~n~~dV~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~~D~V~m~lykrv  781 (795)
                      |||||||++||+||+||+|+||||||||||+||||||+|||+||++|+|+|||||+|||||
T Consensus       237 vr~MF~~~~dv~~F~~~~l~T~~G~rG~Ik~~lgt~G~fka~F~~~i~~~D~V~~~lykrV  297 (297)
T PF04950_consen  237 VRGMFFNPEDVAWFKGAELRTKSGIRGHIKESLGTHGYFKATFEDKIKQSDIVFMRLYKRV  297 (297)
T ss_dssp             ECSSSSTCCHHHHS-S--BEETTS-BEEEEE-BTTTTBBEEEESS---SS-EEEEE-----
T ss_pred             hhhhcCCHHHHHhhcCCEEEeeccCCCEECeeECCCCcEEEEECCcCCCCCEEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999998

; PDB: 1WB1_D 1WB3_B 1WB2_A.

>cd01882 BMS1 Bms1

Probab=99.98  E-value=2.1e-31  Score=277.42  Aligned_cols=206  Identities=20%  Similarity=0.338  Sum_probs=179.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEEEEecCCCccChhhHHHHHHHhhccCCCC--CcceEEEecCce
Q 003796           45 GAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG--ALSSTVSSSKYR  122 (795)
Q Consensus        45 ~~K~~Rr~~a~q~r~~Kr~~v~~~~R~~~~~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~g~~tv~~~r~k  122 (795)
                      +-.++||||++|+|++||++++..+|.  +...||++|+|+|+++++. .+|++.|+..+......  .|++++..+ ..
T Consensus         7 ~~~~~r~~~~~~~~~~k~~~~~~~~r~--~~~~~~~~i~ivG~~~~GK-stl~~~l~~~~~~~~~~~~~g~i~i~~~-~~   82 (225)
T cd01882           7 AVAAARQFQRTADIEEKKLHVPVVDRT--PEEPPPLVVAVVGPPGVGK-TTLIKSLVKNYTKQNISDIKGPITVVTG-KK   82 (225)
T ss_pred             chHHHHHHHHHHHhhhccccceeeccc--cccCCCCEEEEECCCCCCH-HHHHHHHHhhcccCccccccccEEEEec-CC
Confidence            456789999999999999999999997  4589999999999999864 46756656654433322  288888876 47


Q ss_pred             eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhH
Q 003796          123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRK  200 (795)
Q Consensus       123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~Kk~~  200 (795)
                      ++++|+.|| +++..++++++.||+||||+|++.|        +++++.+++++++.+|+|.+++|++.+|.  +.++..
T Consensus        83 ~~i~~vDtP-g~~~~~l~~ak~aDvVllviDa~~~--------~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~  153 (225)
T cd01882          83 RRLTFIECP-NDINAMIDIAKVADLVLLLIDASFG--------FEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLR  153 (225)
T ss_pred             ceEEEEeCC-chHHHHHHHHHhcCEEEEEEecCcC--------CCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHH
Confidence            999999999 9999999999999999999999954        78889999999999999999999999995  334456


Q ss_pred             HHHHHHHhhcccccCCCCeeEEeC-------CHHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccC
Q 003796          201 DLKKMCISSLTSEFPEDCKFYAAD-------TKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVAD  263 (795)
Q Consensus       201 ~~kK~lk~~f~~ef~~~~Klf~l~-------~~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~  263 (795)
                      ++++.|+++|++++..++|+|++|       +.+|+.|++|.|+++++++++||+.|||||||+++|+++
T Consensus       154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~~~  223 (225)
T cd01882         154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDITN  223 (225)
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecccC
Confidence            788999998988877799999999       899999999999999999999999999999999999764

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>smart00785 AARP2CN AARP2CN (NUC121) domain

Probab=99.98  E-value=1.6e-32  Score=240.86  Aligned_cols=82  Identities=39%  Similarity=0.699  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC-CCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccC
Q 003796          228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC-NSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILK  306 (795)
Q Consensus       228 E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~-~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~  306 (795)
                      |++||+|+||+||+++++||++|||||||++++.++.. .+++++|+|||||||++|++|++|||||+|||||++|+.++
T Consensus         1 e~~nL~R~i~~~k~~~l~WR~~rpY~lad~~e~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~   80 (83)
T smart00785        1 EILNLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDEEDPKVDRTLVVYGYVRGTGLNANQLVHIPGLGDFQISKIEALP   80 (83)
T ss_pred             CHHHHHHHHHhccCCCCcccCCCCeEEEEEeEecCCCCCCccCcEEEEEEEEcCCCCCCCCEEEeCCcCCeEeeEEeecC
Confidence            68999999999999999999999999999999986632 34578999999999999999999999999999999999999


Q ss_pred             CCC
Q 003796          307 DPF  309 (795)
Q Consensus       307 dP~  309 (795)
                      |||
T Consensus        81 dP~   83 (83)
T smart00785       81 DPC   83 (83)
T ss_pred             CCC
Confidence            998

This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.

>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2)

Probab=99.97  E-value=5.1e-32  Score=239.03  Aligned_cols=82  Identities=45%  Similarity=0.750  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCC---CCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeec
Q 003796          228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCN---SGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEI  304 (795)
Q Consensus       228 E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~---~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~  304 (795)
                      |++||+|+||++|+++++||++|||||||++++.++++.   +++++|+|||||||.+|++|++|||||+|||||++|+.
T Consensus         1 e~~nl~R~i~~~k~~~i~WR~~r~y~lad~~e~~~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~~   80 (85)
T PF08142_consen    1 EILNLLRFISVQKPRPISWRDQRPYMLADRVEFVPDPEDESENEDGTLKVYGYVRGSPLSVNQLVHIPGVGDFQISKIES   80 (85)
T ss_pred             CHHHHHHHHHhCccCCCccccCCCeEEEEEEEecCCccccccCCceEEEEEEEEccccccCCCEEEeCCcCCeEeeEeee
Confidence            689999999999999999999999999999999876432   22579999999999999999999999999999999999


Q ss_pred             cCCCC
Q 003796          305 LKDPF  309 (795)
Q Consensus       305 ~~dP~  309 (795)
                      ++|||
T Consensus        81 ~~DPc   85 (85)
T PF08142_consen   81 LPDPC   85 (85)
T ss_pred             cCCCC
Confidence            99999

It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus

>PRK12735 elongation factor Tu; Reviewed

Probab=98.58  E-value=6e-06  Score=93.56  Aligned_cols=214  Identities=12%  Similarity=0.121  Sum_probs=140.8

Q ss_pred             CCCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEEEe-----cCceeeEEEEeCCCCC
Q 003796           75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTVSS-----SKYRLRTSVLQAPHGD  134 (795)
Q Consensus        75 ~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~~--g~~tv~~-----~r~k~Ritfie~~~~d  134 (795)
                      ...|.+.|+|+|-.+.+.. +|++.|+.....           .+.  .+  .-+|+.+     ...+..++|+.+| .-
T Consensus         8 ~~~~~~~i~iiGhvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtP-Gh   85 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKT-TLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCP-GH   85 (396)
T ss_pred             CCCCeEEEEEECcCCCCHH-HHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECC-CH
Confidence            4567777999999887764 665554542110           110  11  2223321     1224678999998 52


Q ss_pred             ---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhh
Q 003796          135 ---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISS  209 (795)
Q Consensus       135 ---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~  209 (795)
                         +..|+..+..||.+|||+|+..|        +...+.+.|..+...|+|.++.|++.+|. +.... ..+++.++.+
T Consensus        86 ~~f~~~~~~~~~~aD~~llVvda~~g--------~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~  157 (396)
T PRK12735         86 ADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (396)
T ss_pred             HHHHHHHHhhhccCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence               46688888899999999999854        56678899999999999999889999885 11121 2234445555


Q ss_pred             ccccc-C-CCCeeEEeCCHH------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEE
Q 003796          210 LTSEF-P-EDCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLH  275 (795)
Q Consensus       210 f~~ef-~-~~~Klf~l~~~~------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~  275 (795)
                      +...- + ....++++|..+            .+..|+..|....+.|-.+.+....|.++++-..+.     .| .+++
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g-----~G-tvv~  231 (396)
T PRK12735        158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISG-----RG-TVVT  231 (396)
T ss_pred             HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCC-----ce-EEEE
Confidence            54321 1 235677777533            467899999887665655544444566666554332     34 4699


Q ss_pred             EEEeCCCCCCCCeEEeCCCCc---eeeceeec
Q 003796          276 GYLRAHCLSVNQLVHISGAGD---FQLGKIEI  304 (795)
Q Consensus       276 GyvRG~~l~~n~lVHIpG~GD---fqi~~I~~  304 (795)
                      |.|....++.|..|.|.+.|.   .+|.+|+.
T Consensus       232 G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~  263 (396)
T PRK12735        232 GRVERGIVKVGDEVEIVGIKETQKTTVTGVEM  263 (396)
T ss_pred             EEEEecEEeCCCEEEEecCCCCeEEEEEEEEE
Confidence            999999999999999877653   35666654

>CHL00071 tufA elongation factor Tu

Probab=98.57  E-value=8.6e-06  Score=92.69  Aligned_cols=215  Identities=13%  Similarity=0.104  Sum_probs=141.5

Q ss_pred             CCCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEEEe-----cCceeeEEEEeCCCC-
Q 003796           75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTVSS-----SKYRLRTSVLQAPHG-  133 (795)
Q Consensus        75 ~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~~--g~~tv~~-----~r~k~Ritfie~~~~-  133 (795)
                      ...|.+-|+|+|-...+.. +|++.|+.....           .+.  .+  .-+|+.+     ...+++++|+.+| . 
T Consensus         8 ~~~~~~~i~i~Gh~d~GKS-TL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtP-Gh   85 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKT-TLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCP-GH   85 (409)
T ss_pred             CCCCeEEEEEECCCCCCHH-HHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECC-Ch
Confidence            4567777999999987764 665555543210           010  01  2233331     2224688999998 4 


Q ss_pred             -C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhh
Q 003796          134 -D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISS  209 (795)
Q Consensus       134 -d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~  209 (795)
                       + +..|+.++..||.+|||+||..|        +...+.+++..+...|+|.++.|++.+|. +.... ..+++.++.+
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~  157 (409)
T CHL00071         86 ADYVKNMITGAAQMDGAILVVSAADG--------PMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL  157 (409)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence             3 56788889999999999999954        77889999999999999999999999995 21221 2245556666


Q ss_pred             cccccCC--CCeeEEeCCHH--------------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCC
Q 003796          210 LTSEFPE--DCKFYAADTKD--------------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNS  267 (795)
Q Consensus       210 f~~ef~~--~~Klf~l~~~~--------------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~  267 (795)
                      |...-++  ...++++|..+                    .+..|+-.|....+.|....+....|.++++-..+.    
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g----  233 (409)
T CHL00071        158 LSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITG----  233 (409)
T ss_pred             HHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCC----
Confidence            5543222  25566665311                    246677777766555555545555677787765432    


Q ss_pred             CCceEEEEEEEeCCCCCCCCeEEeCCCCc---eeeceeecc
Q 003796          268 GKCTLLLHGYLRAHCLSVNQLVHISGAGD---FQLGKIEIL  305 (795)
Q Consensus       268 ~~~~l~v~GyvRG~~l~~n~lVHIpG~GD---fqi~~I~~~  305 (795)
                       .| .+++|-|....+++|..|.|.+.+.   -+|.+|+.-
T Consensus       234 -~G-~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~  272 (409)
T CHL00071        234 -RG-TVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF  272 (409)
T ss_pred             -Ce-EEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc
Confidence             34 4599999988899999999865432   456666543

>PRK12736 elongation factor Tu; Reviewed

Probab=98.53  E-value=9.7e-06  Score=91.85  Aligned_cols=213  Identities=14%  Similarity=0.141  Sum_probs=140.5

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--C--CcceEEEe-----cCceeeEEEEeCCCC--
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--G--ALSSTVSS-----SKYRLRTSVLQAPHG--  133 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~--~g~~tv~~-----~r~k~Ritfie~~~~--  133 (795)
                      ..+.+-|+|+|..+++.. +|+..|++....           .+.  .  ..-+|+.+     ...+++++|+.+| .  
T Consensus         9 ~k~~~ni~i~Ghvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtP-Gh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKT-TLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCP-GHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHH-HHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECC-CHH
Confidence            456778999999887764 564544543210           110  0  11122221     1224689999998 5  


Q ss_pred             C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHH-HHHHHHhhc
Q 003796          134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKD-LKKMCISSL  210 (795)
Q Consensus       134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~-~kK~lk~~f  210 (795)
                      + +..|+..+..||.+|||+|+..|        +...+.+.|..+...|+|.++.|++.+|. +.....+ +++.++.++
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g--------~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l  158 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELL  158 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence            2 56788888999999999999854        66788999999999999999999999985 1122222 334455544


Q ss_pred             ccccC--CCCeeEEeCCHH----------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEE
Q 003796          211 TSEFP--EDCKFYAADTKD----------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYL  278 (795)
Q Consensus       211 ~~ef~--~~~Klf~l~~~~----------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gyv  278 (795)
                      ...-.  ....++++|..+          .+..|+..|...-+.|-..-+....|.++++-..+.     .|+ +++|-|
T Consensus       159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g-----~G~-Vv~G~v  232 (394)
T PRK12736        159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITG-----RGT-VVTGRV  232 (394)
T ss_pred             HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCC-----cEE-EEEEEE
Confidence            43221  246788888644          367888888776555544434444567777655432     344 599999


Q ss_pred             eCCCCCCCCeEEeCCCCc---eeeceeec
Q 003796          279 RAHCLSVNQLVHISGAGD---FQLGKIEI  304 (795)
Q Consensus       279 RG~~l~~n~lVHIpG~GD---fqi~~I~~  304 (795)
                      ....++.|..|-|.+.+.   ..|.+|+.
T Consensus       233 ~~G~l~~gd~v~i~p~~~~~~~~V~sI~~  261 (394)
T PRK12736        233 ERGTVKVGDEVEIVGIKETQKTVVTGVEM  261 (394)
T ss_pred             eecEEecCCEEEEecCCCCeEEEEEEEEE
Confidence            999999999998866654   45666654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.52  E-value=6.3e-06  Score=98.15  Aligned_cols=209  Identities=11%  Similarity=0.127  Sum_probs=143.9

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCC----C--cceEEEec------CceeeEEEEeCCCC--C-hHHHHHHHhh
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG----A--LSSTVSSS------KYRLRTSVLQAPHG--D-LVGCMEMAKV  144 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----~--g~~tv~~~------r~k~Ritfie~~~~--d-l~~~LD~aKv  144 (795)
                      +||+++|-...+.. +|    ++.|+..+..    +  ..+|+..+      .-.++++|+.+| .  + +..|+..+.-
T Consensus         1 ~ii~~~GhvdhGKT-tL----i~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtP-Ghe~fi~~m~~g~~~   74 (614)
T PRK10512          1 MIIATAGHVDHGKT-TL----LQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVP-GHEKFLSNMLAGVGG   74 (614)
T ss_pred             CEEEEECCCCCCHH-HH----HHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECC-CHHHHHHHHHHHhhc
Confidence            47899998887775 77    6666653311    1  23343321      013678999998 5  3 4778899999


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEe
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAA  223 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l  223 (795)
                      ||++|||+|+..|        +...+.+.|.+|+..|.|.++.|+|.+|...+ ....++..++..+.........+|.+
T Consensus        75 ~D~~lLVVda~eg--------~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~V  146 (614)
T PRK10512         75 IDHALLVVACDDG--------VMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVT  146 (614)
T ss_pred             CCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence            9999999999854        77789999999999999999999999996112 22345556666654433335678988


Q ss_pred             CC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeec
Q 003796          224 DT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLG  300 (795)
Q Consensus       224 ~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~  300 (795)
                      |.  ..-+..|...|... +.+..+.+....|.+|++-..+.     .| .+|+|.|....+++|..|-|-+.| ..+|.
T Consensus       147 SA~tG~gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G-----~G-tVvtGtv~sG~l~~Gd~v~i~p~~~~~~Vr  219 (614)
T PRK10512        147 AATEGRGIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKG-----AG-LVVTGTALSGEVKVGDTLWLTGVNKPMRVR  219 (614)
T ss_pred             eCCCCCCCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCC-----Ce-EEEEEEEecceEecCCEEEEcCCCCcEEEE
Confidence            84  23355666666654 34455556667788888643322     34 579999999999999999887655 46777


Q ss_pred             eeeccCCCC
Q 003796          301 KIEILKDPF  309 (795)
Q Consensus       301 ~I~~~~dP~  309 (795)
                      +|..-..|+
T Consensus       220 sIq~~~~~v  228 (614)
T PRK10512        220 GLHAQNQPT  228 (614)
T ss_pred             EEecCCcCC
Confidence            777654443

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.41  E-value=2.1e-05  Score=90.64  Aligned_cols=166  Identities=12%  Similarity=0.082  Sum_probs=114.3

Q ss_pred             eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796          122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK  197 (795)
Q Consensus       122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K  197 (795)
                      +++++|+.|| .-   +..|+-.+..||++|||+||..|       .....|.|.|.++.+.|++.+|.||+.+|. +..
T Consensus       116 ~~~i~~IDtP-GH~~fi~~m~~g~~~~D~alLVVda~~g-------~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        116 KRHVSFVDCP-GHDILMATMLNGAAVMDAALLLIAANES-------CPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cceEeeeeCC-CHHHHHHHHHHHHhhCCEEEEEEECCCC-------ccchhhHHHHHHHHHcCCCcEEEEEecccccCHH
Confidence            4689999998 43   56789999999999999999853       134567899999999999999999999985 212


Q ss_pred             hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccC--CCCCCCceEE
Q 003796          198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVAD--DCNSGKCTLL  273 (795)
Q Consensus       198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~--~~~~~~~~l~  273 (795)
                      ........++.++...+..+..+|++|.  -..+..|+-.|...-+.|-...+....|.++|.=....  ...+...-.+
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtV  267 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGV  267 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEE
Confidence            2233444555555444456789999994  33466777777754444433335566677786533221  0001112357


Q ss_pred             EEEEEeCCCCCCCCeEEeCCCC
Q 003796          274 LHGYLRAHCLSVNQLVHISGAG  295 (795)
Q Consensus       274 v~GyvRG~~l~~n~lVHIpG~G  295 (795)
                      |+|.|....+++|+.|.|.-.|
T Consensus       268 v~G~v~~G~l~~Gd~v~i~P~~  289 (460)
T PTZ00327        268 AGGSILQGVLKVGDEIEIRPGI  289 (460)
T ss_pred             EEEEEeeceEecCCEEEEccCc
Confidence            8999999999999999886543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.40  E-value=3.2e-05  Score=91.81  Aligned_cols=208  Identities=15%  Similarity=0.151  Sum_probs=135.4

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCC----C--cceEEEec-----CceeeEEEEeCCCCC---hHHHHHHHhhh
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG----A--LSSTVSSS-----KYRLRTSVLQAPHGD---LVGCMEMAKVA  145 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----~--g~~tv~~~-----r~k~Ritfie~~~~d---l~~~LD~aKvA  145 (795)
                      .+|+++|..+.+++ +|    ++.|++.+..    +  ..+|+..+     --..+++|+.+| ..   +..|+..++-|
T Consensus         1 ~~I~iiG~~d~GKT-TL----i~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtP-Ghe~f~~~~~~g~~~a   74 (581)
T TIGR00475         1 MIIATAGHVDHGKT-TL----LKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVP-GHEKFISNAIAGGGGI   74 (581)
T ss_pred             CEEEEECCCCCCHH-HH----HHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECC-CHHHHHHHHHhhhccC
Confidence            47999999998875 77    6666643211    1  22333221     012689999998 43   56788889999


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccccC-CCCeeEEe
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSEFP-EDCKFYAA  223 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk-~~~~kK~lk~~f~~ef~-~~~Klf~l  223 (795)
                      |.+|||+|++.|        +...+++.|.+++..|+|+++.|++..|...+. ...+.+.++..++.... .+..+|.+
T Consensus        75 D~aILVVDa~~G--------~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~v  146 (581)
T TIGR00475        75 DAALLVVDADEG--------VMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKT  146 (581)
T ss_pred             CEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence            999999999965        667889999999999999999999998851122 22344555555544322 26789998


Q ss_pred             CC-----HHHHHHH-HHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-c
Q 003796          224 DT-----KDELHKF-LWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-D  296 (795)
Q Consensus       224 ~~-----~~E~~nL-~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-D  296 (795)
                      |.     -.+..+. ...+.....+.   -+....|.+|++-....     .| .+|+|.|....+++|..|-|-..| .
T Consensus       147 SA~tG~GI~eL~~~L~~l~~~~~~~~---~~~p~r~~Id~~f~v~G-----~G-tVv~G~v~~G~i~~Gd~l~i~P~~~~  217 (581)
T TIGR00475       147 SAKTGQGIGELKKELKNLLESLDIKR---IQKPLRMAIDRAFKVKG-----AG-TVVTGTAFSGEVKVGDNLRLLPINHE  217 (581)
T ss_pred             eCCCCCCchhHHHHHHHHHHhCCCcC---cCCCcEEEEEEEEecCC-----cE-EEEEEEEecceEecCCEEEECCCCce
Confidence            83     2333322 22222222221   13344577777554322     23 579999999999999999887655 5


Q ss_pred             eeeceeeccCCCCC
Q 003796          297 FQLGKIEILKDPFP  310 (795)
Q Consensus       297 fqi~~I~~~~dP~p  310 (795)
                      .+|.+|..-..|+.
T Consensus       218 ~~Vr~iq~~~~~v~  231 (581)
T TIGR00475       218 VRVKAIQAQNQDVE  231 (581)
T ss_pred             EEEeEEEECCccCC
Confidence            77888876555443

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.40  E-value=2.6e-05  Score=88.41  Aligned_cols=215  Identities=13%  Similarity=0.098  Sum_probs=139.1

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceE-----EEecCceeeEEEEeCCC-CC
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSST-----VSSSKYRLRTSVLQAPH-GD  134 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~~--g~~t-----v~~~r~k~Ritfie~~~-~d  134 (795)
                      .-|-+.|+|+|-.+.+.. +|+..|+..+..           .+.  .+  .-+|     +.....+++++|+.+|- .+
T Consensus         9 ~~~~~~i~i~Ghvd~GKS-tL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKT-TLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCceEEEEEEeecCCCHH-HHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            355677999998887664 564444432110           010  00  1112     22222356899999982 13


Q ss_pred             -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhcc
Q 003796          135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSLT  211 (795)
Q Consensus       135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f~  211 (795)
                       +..|+-.+..||.+|||+|+..|        ....+++.|..+...|+|.++.|++.+|. +.... ..+++.++.++.
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~  159 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence             46788888999999999999955        66788999999999999999999999985 11221 123444555554


Q ss_pred             cccCC--CCeeEEeCCH----------HHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEe
Q 003796          212 SEFPE--DCKFYAADTK----------DELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLR  279 (795)
Q Consensus       212 ~ef~~--~~Klf~l~~~----------~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvR  279 (795)
                      ..-..  ...+++.|..          +.+..|+..|....+.|-.+-+.-..|.++++-..+.     .| .+++|-|.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g-----~G-~Vv~G~v~  233 (394)
T TIGR00485       160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITG-----RG-TVVTGRVE  233 (394)
T ss_pred             hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCC-----ce-EEEEEEEE
Confidence            33221  2678887742          1346777777766665655555555577777654432     24 57999999


Q ss_pred             CCCCCCCCeEEeCCCC---ceeeceeecc
Q 003796          280 AHCLSVNQLVHISGAG---DFQLGKIEIL  305 (795)
Q Consensus       280 G~~l~~n~lVHIpG~G---Dfqi~~I~~~  305 (795)
                      ..-+++|..|.|.+.+   ...|.+|..-
T Consensus       234 ~G~l~~gd~v~i~p~~~~~~~~VksI~~~  262 (394)
T TIGR00485       234 RGIVKVGEEVEIVGLKDTRKTTVTGVEMF  262 (394)
T ss_pred             eeEEeCCCEEEEecCCCCcEEEEEEEEEC
Confidence            9899999999986543   4567777653

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.39  E-value=1.1e-05  Score=81.56  Aligned_cols=146  Identities=17%  Similarity=0.260  Sum_probs=99.7

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCC----------------------CCC--cceEEEecCceeeEEEEeCCCCC-
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEG----------------------TGA--LSSTVSSSKYRLRTSVLQAPHGD-  134 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~----------------------~~~--g~~tv~~~r~k~Ritfie~~~~d-  134 (795)
                      +.|+|+|..+++.. +|+..|+......+                      .+.  +...+......++++||.|| .. 
T Consensus         4 ~~I~i~G~~~sGKT-TL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtP-G~~   81 (188)
T PF00009_consen    4 RNIAIIGHVDSGKT-TLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTP-GHE   81 (188)
T ss_dssp             EEEEEEESTTSSHH-HHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEES-SSH
T ss_pred             EEEEEECCCCCCcE-eechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccc-ccc
Confidence            56999999987765 55455454431110                      011  33333311235899999998 55 


Q ss_pred             --hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc
Q 003796          135 --LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS  212 (795)
Q Consensus       135 --l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~  212 (795)
                        +..|+-+++.||.+|+|+||..|        +...+.++|..++..|+| +|.||+.+|.-.+...++.+.++..|.+
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g--------~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~~~~~~~~~~~~~~~l~~  152 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDG--------IQPQTEEHLKILRELGIP-IIVVLNKMDLIEKELEEIIEEIKEKLLK  152 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTB--------STHHHHHHHHHHHHTT-S-EEEEEETCTSSHHHHHHHHHHHHHHHHH
T ss_pred             ceeecccceecccccceeeeecccc--------cccccccccccccccccc-eEEeeeeccchhhhHHHHHHHHHHHhcc
Confidence              56788999999999999999954        888999999999999999 8999999996223445677777766655


Q ss_pred             ccCCC----CeeEEeCCH--HHHHHHHHHH
Q 003796          213 EFPED----CKFYAADTK--DELHKFLWLF  236 (795)
Q Consensus       213 ef~~~----~Klf~l~~~--~E~~nL~R~I  236 (795)
                      ..+.+    ..++++|..  .-+..|+..|
T Consensus       153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l  182 (188)
T PF00009_consen  153 EYGENGEEIVPVIPISALTGDGIDELLEAL  182 (188)
T ss_dssp             HTTSTTTSTEEEEEEBTTTTBTHHHHHHHH
T ss_pred             ccccCccccceEEEEecCCCCCHHHHHHHH
Confidence            55422    478998852  2344444444

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00049 elongation factor Tu; Reviewed

Probab=98.38  E-value=2.4e-05  Score=88.73  Aligned_cols=206  Identities=14%  Similarity=0.149  Sum_probs=134.4

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccC-----------C--CC--CcceEEEe-----cCceeeEEEEeCCCC--
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSE-----------G--TG--ALSSTVSS-----SKYRLRTSVLQAPHG--  133 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~-----------~--~~--~g~~tv~~-----~r~k~Ritfie~~~~--  133 (795)
                      .-+-+-|+|+|-.+.+.. +|+..|+......           +  ..  ..-+|+.+     ...+.+++|+.+| .  
T Consensus         9 ~~~~~ni~iiGhvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtP-G~~   86 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKT-TLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCP-GHA   86 (396)
T ss_pred             CCCEEEEEEEeECCCCHH-HHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECC-CHH
Confidence            455566999998887654 6655445422110           1  00  12223322     1224689999998 5  


Q ss_pred             C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhc
Q 003796          134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSL  210 (795)
Q Consensus       134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f  210 (795)
                      + +..|+..+..||.+|||+|+..|        +...+.+++..+...|+|.++.+++.+|. +...+ ...++.++.+|
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g--------~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l  158 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCC--------CchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence            3 46678888999999999999855        67788999999999999998889999986 11111 22444566665


Q ss_pred             ccc-c-CCCCeeEEeCCHH------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEE
Q 003796          211 TSE-F-PEDCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHG  276 (795)
Q Consensus       211 ~~e-f-~~~~Klf~l~~~~------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~G  276 (795)
                      ... + +....++++|..+            .+..|+..|....+.|-..-+....|.++++-..+.     .| .+++|
T Consensus       159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g-----~G-~Vv~G  232 (396)
T PRK00049        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISG-----RG-TVVTG  232 (396)
T ss_pred             HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCC-----ce-EEEEE
Confidence            432 2 2345677777432            356888888876555544444444455666544322     34 46899


Q ss_pred             EEeCCCCCCCCeEEeCCCCce
Q 003796          277 YLRAHCLSVNQLVHISGAGDF  297 (795)
Q Consensus       277 yvRG~~l~~n~lVHIpG~GDf  297 (795)
                      .|....+++|..|.|.+.+++
T Consensus       233 ~v~~G~i~~gd~v~i~p~~~~  253 (396)
T PRK00049        233 RVERGIIKVGEEVEIVGIRDT  253 (396)
T ss_pred             EEeeeEEecCCEEEEeecCCC
Confidence            999999999999999766543

>PLN03126 Elongation factor Tu; Provisional

Probab=98.37  E-value=3.8e-05  Score=89.01  Aligned_cols=207  Identities=14%  Similarity=0.142  Sum_probs=135.7

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CC--CCC--cceEEEe-----cCceeeEEEEeCCCC--
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EG--TGA--LSSTVSS-----SKYRLRTSVLQAPHG--  133 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~--~~~--g~~tv~~-----~r~k~Ritfie~~~~--  133 (795)
                      ..|.+.|+++|-.+.+.. +|++.|+.....           .+  ..+  .-+|+.+     ...+++++||.+| .  
T Consensus        78 ~k~~~ni~iiGhvd~GKS-TLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtP-Gh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKT-TLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCP-GHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHH-HHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECC-CHH
Confidence            356677999999887764 565544532110           01  111  2233321     1235799999998 4  


Q ss_pred             C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhh-hHHHHHHHHhhc
Q 003796          134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKK-RKDLKKMCISSL  210 (795)
Q Consensus       134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk-~~~~kK~lk~~f  210 (795)
                      + +..|+..+..||.+|||+||..|        ....+.+.+..++..|+|..+.+++.+|. +... ...+++.++.++
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G--------~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l  227 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL  227 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence            3 56889999999999999999965        66788999999999999999999999985 2111 122444555555


Q ss_pred             ccc-cC-CCCeeEEeCCHH--------------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCC
Q 003796          211 TSE-FP-EDCKFYAADTKD--------------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSG  268 (795)
Q Consensus       211 ~~e-f~-~~~Klf~l~~~~--------------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~  268 (795)
                      ... |+ ....++++|..+                    .+..|+-.|-...+-|-..-+....|.++++-..+.     
T Consensus       228 ~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g-----  302 (478)
T PLN03126        228 SSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITG-----  302 (478)
T ss_pred             HhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCC-----
Confidence            442 22 245566654211                    245677777765444444445555677777654432     


Q ss_pred             CceEEEEEEEeCCCCCCCCeEEeCCCCcee
Q 003796          269 KCTLLLHGYLRAHCLSVNQLVHISGAGDFQ  298 (795)
Q Consensus       269 ~~~l~v~GyvRG~~l~~n~lVHIpG~GDfq  298 (795)
                      .| .+|+|.|....+++|..|.|-..|+++
T Consensus       303 ~G-tVv~G~V~sG~i~~Gd~v~i~p~~~~~  331 (478)
T PLN03126        303 RG-TVATGRVERGTVKVGETVDIVGLRETR  331 (478)
T ss_pred             ce-EEEEEEEEcCeEecCCEEEEecCCCce
Confidence            23 578999999999999999998888654

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.37  E-value=3.4e-05  Score=87.87  Aligned_cols=163  Identities=14%  Similarity=0.135  Sum_probs=108.7

Q ss_pred             eeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796          123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK  197 (795)
Q Consensus       123 ~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K  197 (795)
                      ++++|+.+| ..   +..++..+..||.+|+|+|++.|        + +.++++.|..++..|++.++.|++.+|. +..
T Consensus        85 ~~i~liDtP-G~~~f~~~~~~~~~~~D~~llVVDa~~~--------~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~  155 (411)
T PRK04000         85 RRVSFVDAP-GHETLMATMLSGAALMDGAILVIAANEP--------CPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE  155 (411)
T ss_pred             cEEEEEECC-CHHHHHHHHHHHHhhCCEEEEEEECCCC--------CCChhHHHHHHHHHHcCCCcEEEEEEeeccccch
Confidence            689999998 43   34677788889999999999954        4 6678889999999999999999999885 111


Q ss_pred             hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC---CCCCceE
Q 003796          198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC---NSGKCTL  272 (795)
Q Consensus       198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~---~~~~~~l  272 (795)
                      ......+.++..+...+..+..+|.+|.  ...+..|...|...-+.|-...+....|.++++-.+....   .+..| .
T Consensus       156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G-~  234 (411)
T PRK04000        156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKG-G  234 (411)
T ss_pred             hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcc-e
Confidence            1222334444444433344678888884  2345566666665434444444555567787754332110   11123 4


Q ss_pred             EEEEEEeCCCCCCCCeEEeCCCC
Q 003796          273 LLHGYLRAHCLSVNQLVHISGAG  295 (795)
Q Consensus       273 ~v~GyvRG~~l~~n~lVHIpG~G  295 (795)
                      +++|.|....+++|+.|.|..-|
T Consensus       235 Vv~G~v~~G~l~~gd~v~i~P~~  257 (411)
T PRK04000        235 VIGGSLIQGVLKVGDEIEIRPGI  257 (411)
T ss_pred             EEEEEEEeCEEecCCEEEEcCCc
Confidence            69999999999999999994333

>PLN03127 Elongation factor Tu; Provisional

Probab=98.34  E-value=5e-05  Score=87.41  Aligned_cols=215  Identities=14%  Similarity=0.149  Sum_probs=137.7

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEEE-----ecCceeeEEEEeCCC-CC
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTVS-----SSKYRLRTSVLQAPH-GD  134 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~~--g~~tv~-----~~r~k~Ritfie~~~-~d  134 (795)
                      .-|.+.|+++|-.+.+.. +|++.|.+....           ++.  .+  .-+|+.     ....+++++|+.+|- .+
T Consensus        58 ~k~~~ni~iiGhvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKT-TLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CCceEEEEEECcCCCCHH-HHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            456777999998887654 664444433211           111  11  122222     222346899999982 23


Q ss_pred             -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHH-HHHHHHhhcc
Q 003796          135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKD-LKKMCISSLT  211 (795)
Q Consensus       135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~-~kK~lk~~f~  211 (795)
                       +..|+-.+..||++|||+||..|        +...+.+.|..+..+|.|.+|.||+.+|. +.....+ +++.++.++.
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g--------~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~  208 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLS  208 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence             56688888889999999999855        66789999999999999999999999985 1122222 3334444443


Q ss_pred             cc-cC-CCCeeEEeCC------------HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 003796          212 SE-FP-EDCKFYAADT------------KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY  277 (795)
Q Consensus       212 ~e-f~-~~~Klf~l~~------------~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy  277 (795)
                      .. ++ ....++++|.            ...+..|+..|...-+.|..+-+....|.++++-..+.     .| .+|+|-
T Consensus       209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g-----~G-tVvtG~  282 (447)
T PLN03127        209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQG-----RG-TVATGR  282 (447)
T ss_pred             HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCC-----ce-EEEEEE
Confidence            21 21 1234544442            13467888888887666666655555566776544322     24 579999


Q ss_pred             EeCCCCCCCCeEEeCCCC-----ceeeceeecc
Q 003796          278 LRAHCLSVNQLVHISGAG-----DFQLGKIEIL  305 (795)
Q Consensus       278 vRG~~l~~n~lVHIpG~G-----Dfqi~~I~~~  305 (795)
                      |...-+++|..|.|-|.+     ..+|.+|+.-
T Consensus       283 v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~  315 (447)
T PLN03127        283 VEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF  315 (447)
T ss_pred             EEccEEecCCEEEEcccCCCCcEEEEEEEEEEE
Confidence            999889999999886542     3466666644

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.32  E-value=5.4e-05  Score=86.18  Aligned_cols=164  Identities=13%  Similarity=0.111  Sum_probs=109.2

Q ss_pred             eeeEEEEeCCC--CChHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796          122 RLRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK  197 (795)
Q Consensus       122 k~Ritfie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K  197 (795)
                      .++++|+.+|-  .=+..|+-.+..||.+|||+||+.|        + ..++.+.|..++..|++.++.|++.+|. +..
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g--------~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~  150 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP--------CPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE  150 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC--------ccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence            36899999983  1256788888999999999999965        4 5578889999999999999999999885 111


Q ss_pred             hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC--CCCCceEE
Q 003796          198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC--NSGKCTLL  273 (795)
Q Consensus       198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~--~~~~~~l~  273 (795)
                      ........++..+...+..+..+|++|.  ...+..|.-.|...-+.|-..-+....|.++++-.+....  .+.....+
T Consensus       151 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~V  230 (406)
T TIGR03680       151 KALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGV  230 (406)
T ss_pred             HHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeE
Confidence            1222333444444333334567888883  3345556666665434443444566678888764432210  01112247


Q ss_pred             EEEEEeCCCCCCCCeEEe-CC
Q 003796          274 LHGYLRAHCLSVNQLVHI-SG  293 (795)
Q Consensus       274 v~GyvRG~~l~~n~lVHI-pG  293 (795)
                      ++|.|....+++|..|.| |+
T Consensus       231 v~G~v~~G~i~~gd~v~i~P~  251 (406)
T TIGR03680       231 IGGSLIQGKLKVGDEIEIRPG  251 (406)
T ss_pred             EEEEEEeCEEeCCCEEEEccC
Confidence            899999999999999999 66

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.03  E-value=0.00046  Score=79.58  Aligned_cols=174  Identities=15%  Similarity=0.120  Sum_probs=116.8

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCcccccccccc--ChHHHHHHHHHHhcCCCceEEEeccCCc---
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI--DSFGNQCLSVFRSLGLPSTAVLIRDLPT---  194 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~f--e~eg~e~L~~l~aqG~P~vigVl~~Ld~---  194 (795)
                      ..+++||.+|- .+ +..|+-++..||.+|||+||..|. ++  .+|  +-.|.+.|.++.+.|+|.+|.+++.+|.   
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-~e--~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGE-FE--AGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCc-ee--cccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence            47899999982 23 568999999999999999999762 00  123  3589999999999999999999999993   


Q ss_pred             ch--hhhHHHHHHHHhhcccccC--CCCeeEEeCCHHH--------------HHHHHHHHhhccccCcccccCCCeEEEE
Q 003796          195 DL--KKRKDLKKMCISSLTSEFP--EDCKFYAADTKDE--------------LHKFLWLFKEQRLTVPHWRNQRPFLMAQ  256 (795)
Q Consensus       195 ~~--Kk~~~~kK~lk~~f~~ef~--~~~Klf~l~~~~E--------------~~nL~R~Is~~k~r~l~WR~~rpYmLad  256 (795)
                      ++  ..-..+++.++.+|...-.  ....++++|..+.              .-.|+..|-...+ |-.+.+.-..|.++
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~~-~~~~~~~p~r~~I~  239 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLEP-PKRPVDKPLRLPLQ  239 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCCC-CCcCCCCCeEEEEE
Confidence            11  1224567777777654322  2466788873210              1136666655432 33344444457777


Q ss_pred             eeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796          257 KVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEIL  305 (795)
Q Consensus       257 r~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~  305 (795)
                      ++--.+.     .+ .+++|.|....+++|+.|.+.--| ...|.+|+.-
T Consensus       240 ~v~~v~g-----~G-tvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~  283 (446)
T PTZ00141        240 DVYKIGG-----IG-TVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH  283 (446)
T ss_pred             EEEecCC-----ce-EEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec
Confidence            7654322     23 577999999999999988775444 3566666543

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.01  E-value=2.2e-05  Score=76.43  Aligned_cols=130  Identities=15%  Similarity=0.142  Sum_probs=88.7

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC----cceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF  157 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g  157 (795)
                      |.+||+.+++.. +|++.|...-..+..+.    ...+|-+|.     .|+|+| +-..++|..|.-||+|++|.||+..
T Consensus         4 imliG~~g~GKT-TL~q~L~~~~~~~~KTq~i~~~~~~IDTPG-----EyiE~~-~~y~aLi~ta~dad~V~ll~dat~~   76 (143)
T PF10662_consen    4 IMLIGPSGSGKT-TLAQALNGEEIRYKKTQAIEYYDNTIDTPG-----EYIENP-RFYHALIVTAQDADVVLLLQDATEP   76 (143)
T ss_pred             EEEECCCCCCHH-HHHHHHcCCCCCcCccceeEecccEEECCh-----hheeCH-HHHHHHHHHHhhCCEEEEEecCCCC
Confidence            789999998876 67444343333332222    334455554     589998 9999999999999999999999964


Q ss_pred             cccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc--hhhhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHH
Q 003796          158 SEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD--LKKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFL  233 (795)
Q Consensus       158 ~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~--~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~  233 (795)
                              +...--.|.++++    ..||||+|++|..  ......+++.|+..-++      ++|.+|.  ..-+..|.
T Consensus        77 --------~~~~pP~fa~~f~----~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~------~if~vS~~~~eGi~eL~  138 (143)
T PF10662_consen   77 --------RSVFPPGFASMFN----KPVIGVITKIDLPSDDANIERAKKWLKNAGVK------EIFEVSAVTGEGIEELK  138 (143)
T ss_pred             --------CccCCchhhcccC----CCEEEEEECccCccchhhHHHHHHHHHHcCCC------CeEEEECCCCcCHHHHH
Confidence                    4455566666664    5799999999962  34445677888876543      5788874  33344555


Q ss_pred             HHH
Q 003796          234 WLF  236 (795)
Q Consensus       234 R~I  236 (795)
                      ++|
T Consensus       139 ~~L  141 (143)
T PF10662_consen  139 DYL  141 (143)
T ss_pred             HHH
Confidence            554

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=0.00083  Score=72.94  Aligned_cols=167  Identities=22%  Similarity=0.300  Sum_probs=115.4

Q ss_pred             EEEEecCCCcccCCCCCeEEEEeeeeeeeeeeeeccCCCCC---------CceEEecc-cCC---Cc---eEEEEEEeec
Q 003796          602 FSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNS---------DKHKMERF-LHA---GC---FSVASIYAPI  665 (795)
Q Consensus       602 ~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~~PifS~~~~~~---------~r~k~~ky-~~~---~~---~~~AtfygPi  665 (795)
                      ..++.-+.|.++|+||.-+-+++|+----+.-.|-. |+.+         ...-+|+= +|.   +.   ..+.+|=-||
T Consensus       296 ~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~-d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv  374 (522)
T KOG0461|consen  296 ATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFK-DTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPV  374 (522)
T ss_pred             EeecchHHHhhhhhhcceEEEEehhhhhhhheEEee-ccCCcccccccchhhhccccccChhhcCCchheeeeeeecccc
Confidence            345556688888999988888888866554444433 2111         11223321 222   22   4467888899


Q ss_pred             CCCCccEE-EEEeCCCC--CCCeEEEEeEEeccCCc----------ceeEEeEEEEeeeeEEeee-eEEEeecCCChhhc
Q 003796          666 CFPPLPLI-VLKSADGG--VAPAVAAVGSLRSIDPD----------RIILKKIVLTGYPQRVSKL-KAIVRYMFHNPEDV  731 (795)
Q Consensus       666 ~~~~t~vl-~f~~~~~~--~~~ri~atG~vl~~d~~----------r~IvKklkLtG~P~KI~K~-tA~Ir~MF~n~~dV  731 (795)
                      ..|+-..+ +=+-..+.  .+-|++.+|-+.-.-|+          +.|.||=-=.||--++.+- .|++++||--.--.
T Consensus       375 ~~P~~s~~i~s~ld~d~h~~~CRlAF~Gi~~~~l~~~~y~~~~LP~lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~  454 (522)
T KOG0461|consen  375 FLPEYSNPIMSALDEDQHGSGCRLAFSGIFSQILPESKYNGKNLPPLRIFKRKCKKGHVERVEKDFSVICTGLFKAETNF  454 (522)
T ss_pred             cCcccccHHHHhhhhhcCCCceEEEeeeehhhhCcccccccccCCchhhhhhhhcccchhhhhccHHHHHhhhhcccccc
Confidence            88873322 22222222  57899999998766655          4455555556766666655 45679999988888


Q ss_pred             cccccceeeecccccceeeCCCCCCceeEEEecccccc
Q 003796          732 RWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQ  769 (795)
Q Consensus       732 ~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~  769 (795)
                      .-|.|-++.+.+|-||.|-.+.|..|.||.+|-++|..
T Consensus       455 dlfvG~~v~lStGe~G~Ie~aFGqsgKf~itf~~~lsp  492 (522)
T KOG0461|consen  455 DLFVGFQVCLSTGERGKIEGAFGQSGKFRITFAEKLSP  492 (522)
T ss_pred             ceeeeeEEEeccCCccceeccccCcceEEEEecccCCh
Confidence            89999999999999999999999999999999999864

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=97.90  E-value=0.00024  Score=72.94  Aligned_cols=113  Identities=12%  Similarity=0.130  Sum_probs=80.0

Q ss_pred             eeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-h
Q 003796          123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-K  198 (795)
Q Consensus       123 ~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K-k  198 (795)
                      ++++|+.+| ..   +..++.++..+|.+|||+|++.+       .....++++|..+...|++.++.|++.+|...+ +
T Consensus        83 ~~i~~iDtP-G~~~~~~~~~~~~~~~D~~llVvd~~~~-------~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~  154 (203)
T cd01888          83 RHVSFVDCP-GHEILMATMLSGAAVMDGALLLIAANEP-------CPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQ  154 (203)
T ss_pred             cEEEEEECC-ChHHHHHHHHHhhhcCCEEEEEEECCCC-------CCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHH
Confidence            689999998 43   56778889999999999999852       245567889998988999989999999996111 2


Q ss_pred             hHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccC
Q 003796          199 RKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTV  243 (795)
Q Consensus       199 ~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~  243 (795)
                      .....+.++..+......+..+|.+|.  ...+..|...|...-+.|
T Consensus       155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            233445555555543334567888884  334666777776655544

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.87  E-value=0.0006  Score=69.96  Aligned_cols=137  Identities=14%  Similarity=0.102  Sum_probs=91.4

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccC-----------CC--C--CcceEEE-----ecCceeeEEEEeCCCC--C-hH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSE-----------GT--G--ALSSTVS-----SSKYRLRTSVLQAPHG--D-LV  136 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~-----------~~--~--~g~~tv~-----~~r~k~Ritfie~~~~--d-l~  136 (795)
                      .-|+|+|-.+.+.. +|++.|+......           +.  .  ..-+|+.     ....++.++|+.+| +  + +.
T Consensus         3 ~ni~iiGh~~~GKT-TL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtP-G~~~~~~   80 (195)
T cd01884           3 VNVGTIGHVDHGKT-TLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCP-GHADYIK   80 (195)
T ss_pred             EEEEEECCCCCCHH-HHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECc-CHHHHHH
Confidence            34899999887764 6655555432111           00  0  1112221     22235789999998 5  3 46


Q ss_pred             HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhccccc
Q 003796          137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSLTSEF  214 (795)
Q Consensus       137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f~~ef  214 (795)
                      .++.++..||.+|||+|++.|        +...+.++++.+..+|+|.+|.|++.+|. ....+ ..+++.+++++...-
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g  152 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDG--------PMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG  152 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            688889999999999999955        77889999999999999999999999985 11222 235556666665432


Q ss_pred             C--CCCeeEEeCCH
Q 003796          215 P--EDCKFYAADTK  226 (795)
Q Consensus       215 ~--~~~Klf~l~~~  226 (795)
                      +  .+..++++|..
T Consensus       153 ~~~~~v~iipiSa~  166 (195)
T cd01884         153 FDGDNTPIVRGSAL  166 (195)
T ss_pred             ccccCCeEEEeeCc
Confidence            2  35778888853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.74  E-value=0.0013  Score=79.79  Aligned_cols=198  Identities=11%  Similarity=0.126  Sum_probs=111.9

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC---C-------cceEEEec--CceeeEEEEeCCC-CChHHHHH-HH
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A-------LSSTVSSS--KYRLRTSVLQAPH-GDLVGCME-MA  142 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~-------g~~tv~~~--r~k~Ritfie~~~-~dl~~~LD-~a  142 (795)
                      ..|.+|+|+|..+.+.. +|    +..++.....   .       +...+...  ....+|+|+.+|- .++..|.. .+
T Consensus       242 ~r~p~V~IvGhvdvGKT-SL----ld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~  316 (742)
T CHL00189        242 NRPPIVTILGHVDHGKT-TL----LDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGA  316 (742)
T ss_pred             ccCCEEEEECCCCCCHH-HH----HHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHH
Confidence            35668999999988775 67    4444332211   1       22222221  1247899999982 24555554 78


Q ss_pred             hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh--cccccCCCCee
Q 003796          143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS--LTSEFPEDCKF  220 (795)
Q Consensus       143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~--f~~ef~~~~Kl  220 (795)
                      ..||++|||+|+..|        ....+++.|..++..|+| +|.|++.+|........++..|..+  +...+.....+
T Consensus       317 ~~aDiaILVVDA~dG--------v~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpv  387 (742)
T CHL00189        317 NVTDIAILIIAADDG--------VKPQTIEAINYIQAANVP-IIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPM  387 (742)
T ss_pred             HHCCEEEEEEECcCC--------CChhhHHHHHHHHhcCce-EEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceE
Confidence            999999999999865        667899999999999999 7778898885112223344545432  11222223578


Q ss_pred             EEeCCH--HHHHHHHHHHhhccc-cCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCC
Q 003796          221 YAADTK--DELHKFLWLFKEQRL-TVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISG  293 (795)
Q Consensus       221 f~l~~~--~E~~nL~R~Is~~k~-r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG  293 (795)
                      +.+|..  ..+..|+-.|+.... ..+.-....| ..+.-++..-+    ...-.+++|-|....|++|..|.+..
T Consensus       388 v~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~~-~~g~V~e~~iD----~~~G~V~~~~V~sGtLr~GD~vv~g~  458 (742)
T CHL00189        388 IPISASQGTNIDKLLETILLLAEIEDLKADPTQL-AQGIILEAHLD----KTKGPVATILVQNGTLHIGDIIVIGT  458 (742)
T ss_pred             EEEECCCCCCHHHHHHhhhhhhhhhcccCCCCCC-ceEEEEEEEEc----CCCceEEEEEEEcCEEecCCEEEECC
Confidence            888842  224444444433211 0111111111 11211221111    12335677777666688888886654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.67  E-value=0.0044  Score=73.94  Aligned_cols=210  Identities=12%  Similarity=0.091  Sum_probs=134.6

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhh---ccCC-CC-----------CcceEEEe-----cCceeeEEEEeCCC-CChH-H
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQL---SSEG-TG-----------ALSSTVSS-----SKYRLRTSVLQAPH-GDLV-G  137 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~---~~~~-~~-----------~g~~tv~~-----~r~k~Ritfie~~~-~dl~-~  137 (795)
                      +-|+|+|..+.+++ +|+..|+..-   .... ..           +.-+|+.+     .-...+|+|+-+|- .|+. .
T Consensus         2 RNIaIiGHvd~GKT-TLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         2 RNIAIIAHVDHGKT-TLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE   80 (594)
T ss_pred             cEEEEEcCCCCCHH-HHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence            45899999887775 6655556421   1110 00           01233322     11257899999973 3443 5


Q ss_pred             HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCC-
Q 003796          138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPE-  216 (795)
Q Consensus       138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~-  216 (795)
                      +.-+++.||.+|||+||+.|        ....+.+.|..+...|+|. |.|++.+|........+...++..|...-.+ 
T Consensus        81 v~~~l~~aD~alLVVDa~~G--------~~~qT~~~l~~a~~~~ip~-IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~  151 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLKP-IVVINKIDRPSARPDEVVDEVFDLFAELGADD  151 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCC--------CcHHHHHHHHHHHHCCCCE-EEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence            67788999999999999865        5667889999999999994 6789998851122223445555554321010 


Q ss_pred             ---CCeeEEeCCHH------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCC
Q 003796          217 ---DCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAH  281 (795)
Q Consensus       217 ---~~Klf~l~~~~------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~  281 (795)
                         ...+++.|..+            .+..|+..|...-|.|...-+...-|++.++.+.+.     .|. .++|-|...
T Consensus       152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~-----~Gr-v~~gRV~sG  225 (594)
T TIGR01394       152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEY-----LGR-IAIGRVHRG  225 (594)
T ss_pred             ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCC-----Cce-EEEEEEEeC
Confidence               23467777433            366888888888787765444444577777776543     354 478888888


Q ss_pred             CCCCCCeEEeCCC-Cc---eeeceeecc
Q 003796          282 CLSVNQLVHISGA-GD---FQLGKIEIL  305 (795)
Q Consensus       282 ~l~~n~lVHIpG~-GD---fqi~~I~~~  305 (795)
                      .|++|+.|.+..- |.   ..|.+|...
T Consensus       226 ~lk~G~~V~~~~~~~~~~~~kV~~i~~~  253 (594)
T TIGR01394       226 TVKKGQQVALMKRDGTIENGRISKLLGF  253 (594)
T ss_pred             EEccCCEEEEecCCCceeEEEEEEEEEc
Confidence            8999999998765 43   456666543

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04171 SelB SelB subfamily

Probab=97.65  E-value=0.0017  Score=62.73  Aligned_cols=131  Identities=15%  Similarity=0.136  Sum_probs=83.7

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC----C---------cceEEEecCceeeEEEEeCCCC-Ch-HHHHHHHhhh
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG----A---------LSSTVSSSKYRLRTSVLQAPHG-DL-VGCMEMAKVA  145 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----~---------g~~tv~~~r~k~Ritfie~~~~-dl-~~~LD~aKvA  145 (795)
                      +|+|+|.++.+.. +|    ++.|++....    .         +..++..+. ...++|+.+|-. ++ ..++..+.-|
T Consensus         2 ~i~i~G~~~~GKs-sl----~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~a   75 (164)
T cd04171           2 IIGTAGHIDHGKT-TL----IKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGI   75 (164)
T ss_pred             EEEEEecCCCCHH-HH----HHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcC
Confidence            6899999998875 77    5555432210    0         111222221 357888988731 22 3456677789


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeC
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAAD  224 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l~  224 (795)
                      |.+|+|+|++.+        +..+.++.+..++..|.+.++.|++..|.... ......+.++..+......+..+|.+|
T Consensus        76 d~ii~V~d~~~~--------~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (164)
T cd04171          76 DLVLLVVAADEG--------IMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVS  147 (164)
T ss_pred             CEEEEEEECCCC--------ccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence            999999999843        56677788888888898778899999885112 223344555555544322357888888


Q ss_pred             C
Q 003796          225 T  225 (795)
Q Consensus       225 ~  225 (795)
                      .
T Consensus       148 a  148 (164)
T cd04171         148 A  148 (164)
T ss_pred             C
Confidence            4

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.64  E-value=0.003  Score=77.23  Aligned_cols=203  Identities=16%  Similarity=0.207  Sum_probs=117.7

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC---C-------cceEEEecCceeeEEEEeCCC-CChHHHHH-HHhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A-------LSSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKV  144 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~-------g~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKv  144 (795)
                      .-|-+|+|+|..+.+.+ +|    +..|+.....   .       |..++..+  .++|+|+.+|- .++..|.. .+.+
T Consensus       288 ~R~pvV~ImGhvd~GKT-SL----l~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~  360 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKT-SL----LDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQV  360 (787)
T ss_pred             cCCCEEEEECCCCCCHH-HH----HHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhh
Confidence            45566999999887775 67    5544432221   1       22333333  36899999873 45666665 6899


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh--cccccCCCCeeEE
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS--LTSEFPEDCKFYA  222 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~--f~~ef~~~~Klf~  222 (795)
                      ||++|||+|+..|        ...++++.|+.+...|+| +|.|++.+|........++..|...  +-..+.....+|.
T Consensus       361 aDiaILVVdAddG--------v~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vp  431 (787)
T PRK05306        361 TDIVVLVVAADDG--------VMPQTIEAINHAKAAGVP-IIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVP  431 (787)
T ss_pred             CCEEEEEEECCCC--------CCHhHHHHHHHHHhcCCc-EEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEE
Confidence            9999999999865        667899999999999999 8888998885111112344433321  1112223467888


Q ss_pred             eCCH--HHHHHHHHHHhhc----cccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCc
Q 003796          223 ADTK--DELHKFLWLFKEQ----RLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGD  296 (795)
Q Consensus       223 l~~~--~E~~nL~R~Is~~----k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GD  296 (795)
                      +|..  .-+..|+..|...    ..+.-.  +..+-..+.+....+      ....+++|-|....|++|..|.+   |.
T Consensus       432 vSAktG~GI~eLle~I~~~~e~~~l~~~~--~~~~~g~V~es~~dk------g~G~v~~v~V~sGtLk~Gd~vv~---g~  500 (787)
T PRK05306        432 VSAKTGEGIDELLEAILLQAEVLELKANP--DRPARGTVIEAKLDK------GRGPVATVLVQNGTLKVGDIVVA---GT  500 (787)
T ss_pred             EeCCCCCCchHHHHhhhhhhhhhhcccCC--CCCcEEEEEEEEEcC------CCeEEEEEEEecCeEecCCEEEE---CC
Confidence            8842  2233344444321    111100  111222333322221      23456888888778999888766   22


Q ss_pred             eeeceeeccCC
Q 003796          297 FQLGKIEILKD  307 (795)
Q Consensus       297 fqi~~I~~~~d  307 (795)
                       ...+|..+-+
T Consensus       501 -~~gkVr~m~~  510 (787)
T PRK05306        501 -TYGRVRAMVD  510 (787)
T ss_pred             -cEEEEEEEEC
Confidence             3456655543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.63  E-value=0.0045  Score=70.63  Aligned_cols=169  Identities=13%  Similarity=0.097  Sum_probs=107.3

Q ss_pred             eeeEEEEeCCCC--Ch-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796          122 RLRTSVLQAPHG--DL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK  197 (795)
Q Consensus       122 k~Ritfie~~~~--dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K  197 (795)
                      +++++|+.+| .  ++ ..|+.++..||.+|||+||+.|        +...+.+.+.++...|+|.++.|++.+|. +..
T Consensus        79 ~~~~~liDtP-Gh~~f~~~~~~~~~~aD~allVVda~~G--------~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~  149 (406)
T TIGR02034        79 KRKFIVADTP-GHEQYTRNMATGASTADLAVLLVDARKG--------VLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD  149 (406)
T ss_pred             CeEEEEEeCC-CHHHHHHHHHHHHhhCCEEEEEEECCCC--------CccccHHHHHHHHHcCCCcEEEEEEecccccch
Confidence            5789999998 4  44 5789999999999999999965        66678899999999999999999999985 111


Q ss_pred             h--hHHHHHHHHhhcccccCCCCeeEEeCCHH--------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEec
Q 003796          198 K--RKDLKKMCISSLTSEFPEDCKFYAADTKD--------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVV  261 (795)
Q Consensus       198 k--~~~~kK~lk~~f~~ef~~~~Klf~l~~~~--------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~  261 (795)
                      .  ....+..++.++...-.....++++|..+              +.-.|+-.|....+ |....+.-..|.++++.-.
T Consensus       150 ~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~-~~~~~~~p~r~~i~~v~~~  228 (406)
T TIGR02034       150 EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEV-ERDAQDLPLRFPVQYVNRP  228 (406)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCC-CCCcCCCCcccceEEEeec
Confidence            1  12234444433332212245688887311              12346666665533 2233333333545554211


Q ss_pred             cCCCCCCCceEEEEEEEeCCCCCCCCeEEe-CCCCceeeceeeccC
Q 003796          262 ADDCNSGKCTLLLHGYLRAHCLSVNQLVHI-SGAGDFQLGKIEILK  306 (795)
Q Consensus       262 ~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDfqi~~I~~~~  306 (795)
                      .      ....-+.|.|...-+++|+.|.| |+-=..+|.+|..-.
T Consensus       229 ~------~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~  268 (406)
T TIGR02034       229 N------LDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFD  268 (406)
T ss_pred             C------CCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECC
Confidence            0      00112678888888999988885 653356677776543

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.60  E-value=0.0045  Score=73.74  Aligned_cols=194  Identities=16%  Similarity=0.162  Sum_probs=116.2

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceE-------EEecCceeeEEEEeCCC-CChHHHHH-HHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSST-------VSSSKYRLRTSVLQAPH-GDLVGCME-MAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~~t-------v~~~r~k~Ritfie~~~-~dl~~~LD-~aKvA  145 (795)
                      -|.+|+|+|..+.+.+ +|    +..|++.....   +.+|       +.... .++++|+.+|- .++..|.. .+..|
T Consensus        86 r~p~V~I~Ghvd~GKT-SL----l~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~r~rga~~a  159 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKT-SL----LDSIRKTKVAQGEAGGITQHIGAYHVENED-GKMITFLDTPGHEAFTSMRARGAKVT  159 (587)
T ss_pred             CCCEEEEECCCCCCHH-HH----HHHHHhCCcccccCCceeecceEEEEEECC-CcEEEEEECCCCcchhhHHHhhhccC
Confidence            3446899999998876 67    55554432211   2233       33222 23899999973 35666655 68999


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh-cc-cccCCCCeeEEe
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS-LT-SEFPEDCKFYAA  223 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~-f~-~ef~~~~Klf~l  223 (795)
                      |++||++|+..|        ....+.+.|+.+...|+| ++.+++.+|........+++.++.. +. ..+.....+|..
T Consensus       160 DiaILVVda~dg--------v~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~i  230 (587)
T TIGR00487       160 DIVVLVVAADDG--------VMPQTIEAISHAKAANVP-IIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPV  230 (587)
T ss_pred             CEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence            999999999854        677889999999999999 7888898885111122344444432 11 122323578888


Q ss_pred             CC--HHHHHHHHHHHhhccc-cCccc-ccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeC
Q 003796          224 DT--KDELHKFLWLFKEQRL-TVPHW-RNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHIS  292 (795)
Q Consensus       224 ~~--~~E~~nL~R~Is~~k~-r~l~W-R~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIp  292 (795)
                      |.  -.-+..|+..|..+.. ..+.- .+...-+.+.++...+.      .-.+++|-|+...|++|..|.+.
T Consensus       231 SAktGeGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g------~G~v~~~~V~~GtL~~Gd~iv~~  297 (587)
T TIGR00487       231 SALTGDGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKG------RGPVATVLVQSGTLRVGDIVVVG  297 (587)
T ss_pred             ECCCCCChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCC------CcEEEEEEEEeCEEeCCCEEEEC
Confidence            73  2224444444432210 01100 12334445555554321      23568888988889999888764

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=97.57  E-value=0.0064  Score=69.67  Aligned_cols=171  Identities=15%  Similarity=0.139  Sum_probs=108.0

Q ss_pred             eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-h
Q 003796          122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-K  197 (795)
Q Consensus       122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-K  197 (795)
                      +.+++|+.+|- .++ ..|+..++-||.+|||+|++..      .++...+.+.+..+...|.|.++.|++.+|. +. .
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~------~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~  156 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA------GGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDE  156 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC------CCCCcchHHHHHHHHHcCCCeEEEEEEccccccccH
Confidence            56899999872 344 4577888999999999999850      1366677888888899999989999999885 11 1


Q ss_pred             h-hHHHHHHHHhhcccc-cC-CCCeeEEeCCH-----HH---------HHHHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796          198 K-RKDLKKMCISSLTSE-FP-EDCKFYAADTK-----DE---------LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDV  260 (795)
Q Consensus       198 k-~~~~kK~lk~~f~~e-f~-~~~Klf~l~~~-----~E---------~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~  260 (795)
                      . ...+++.++.++... +. ....+|.+|..     .+         ...|+-.|....+ |-.+-+.-..|.++++-.
T Consensus       157 ~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~-~~~~~~~p~r~~i~~~~~  235 (425)
T PRK12317        157 KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKP-PEKPTDKPLRIPIQDVYS  235 (425)
T ss_pred             HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCC-CccccCCCcEEEEEEEEe
Confidence            1 123445555554332 11 13568887731     11         1134455544332 323323333466666554


Q ss_pred             ccCCCCCCCceEEEEEEEeCCCCCCCCeEEe-CCCCceeeceeecc
Q 003796          261 VADDCNSGKCTLLLHGYLRAHCLSVNQLVHI-SGAGDFQLGKIEIL  305 (795)
Q Consensus       261 ~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDfqi~~I~~~  305 (795)
                      ...     .| .+++|.|....+++|..|.| |+--..+|.+|+.-
T Consensus       236 ~~g-----~G-~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~  275 (425)
T PRK12317        236 ISG-----VG-TVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH  275 (425)
T ss_pred             eCC-----Ce-EEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC
Confidence            321     23 57799999999999999987 54335777777654

>cd04165 GTPBP1_like GTPBP1-like

Probab=97.51  E-value=0.0028  Score=66.50  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=59.4

Q ss_pred             eeeEEEEeCCCCC---hHHHHHHHh--hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch
Q 003796          122 RLRTSVLQAPHGD---LVGCMEMAK--VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL  196 (795)
Q Consensus       122 k~Ritfie~~~~d---l~~~LD~aK--vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~  196 (795)
                      .+.++|+.+| ..   +..++-++.  .+|++|+|+|+..|        +...+.+++..++.+|+| ++.|++.+|.-.
T Consensus        83 ~~~i~liDtp-G~~~~~~~~~~~~~~~~~D~~llVvda~~g--------~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~  152 (224)
T cd04165          83 SKLVTFIDLA-GHERYLKTTLFGLTGYAPDYAMLVVAANAG--------IIGMTKEHLGLALALNIP-VFVVVTKIDLAP  152 (224)
T ss_pred             CcEEEEEECC-CcHHHHHHHHHhhcccCCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence            4689999998 54   344555553  79999999999865        677889999999999999 788899988511


Q ss_pred             h-hhHHHHHHHHhhcc
Q 003796          197 K-KRKDLKKMCISSLT  211 (795)
Q Consensus       197 K-k~~~~kK~lk~~f~  211 (795)
                      + ....+++.+++.+.
T Consensus       153 ~~~~~~~~~~l~~~L~  168 (224)
T cd04165         153 ANILQETLKDLKRILK  168 (224)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            2 23455666666554

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.49  E-value=0.012  Score=67.46  Aligned_cols=172  Identities=15%  Similarity=0.208  Sum_probs=107.9

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-h
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-K  197 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-K  197 (795)
                      +.+++|+.+|- .+ +..|+..++-||.+|||+|++.|.     ......+.+.+.+++..|.+.++.|++.+|. +. .
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~-----~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~  158 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE-----FEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE  158 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCC-----cccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence            46889999972 23 346788889999999999999651     0123456677777778899999999999885 11 1


Q ss_pred             -hhHHHHHHHHhhcccc-c-CCCCeeEEeCCHHH--------------HHHHHHHHhhccccCcccccCCC-eEEEEeeE
Q 003796          198 -KRKDLKKMCISSLTSE-F-PEDCKFYAADTKDE--------------LHKFLWLFKEQRLTVPHWRNQRP-FLMAQKVD  259 (795)
Q Consensus       198 -k~~~~kK~lk~~f~~e-f-~~~~Klf~l~~~~E--------------~~nL~R~Is~~k~r~l~WR~~rp-YmLadr~e  259 (795)
                       ....+++.++.++... + +....++.+|..+.              ...|+..|-...+. -.. ...| -|.++++-
T Consensus       159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~~~-~~~-~~~p~r~~i~~v~  236 (426)
T TIGR00483       159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALEPP-EKP-TDKPLRIPIQDVY  236 (426)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCCCC-CCc-cCCCcEEEEEEEE
Confidence             1223445555444332 1 12356777773211              12577777655432 222 3344 46667655


Q ss_pred             eccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 003796          260 VVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK  306 (795)
Q Consensus       260 ~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~  306 (795)
                      ..+.     .| .+++|.|....+++|+.|.|.-.| ..+|.+|+.-.
T Consensus       237 ~~~g-----~G-~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~  278 (426)
T TIGR00483       237 SITG-----VG-TVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH  278 (426)
T ss_pred             ecCC-----Ce-EEEEEEEccceeecCCEEEECCCCcEEEEEEEEECC
Confidence            4332     24 468999999999999999884434 46677776543

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.42  E-value=0.008  Score=69.95  Aligned_cols=173  Identities=12%  Similarity=0.053  Sum_probs=108.1

Q ss_pred             eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hhh
Q 003796          122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKK  198 (795)
Q Consensus       122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~Kk  198 (795)
                      ++.++|+.+|- .++ ..|+-.++.||++|||+||..|        +...+.+.+.++...|++.++.|++.+|.. ...
T Consensus       106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G--------~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~  177 (474)
T PRK05124        106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG--------VLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE  177 (474)
T ss_pred             CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccccchHHHHHHHHhCCCceEEEEEeeccccchh
Confidence            46899999872 244 4688889999999999999965        555677888888899999999999999851 111


Q ss_pred             --hHHHHHHHHhhcccc-cCCCCeeEEeCCH-----HH---------HHHHHHHHhhccccCcccccCCCeEEEEeeEec
Q 003796          199 --RKDLKKMCISSLTSE-FPEDCKFYAADTK-----DE---------LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVV  261 (795)
Q Consensus       199 --~~~~kK~lk~~f~~e-f~~~~Klf~l~~~-----~E---------~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~  261 (795)
                        ...+++.++.++... +.....++++|..     .+         ...|+-.|....+ |..+.+.-..|.++++.-.
T Consensus       178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~-~~~~~~~p~r~~I~~v~~~  256 (474)
T PRK05124        178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDI-QRVVDAQPFRFPVQYVNRP  256 (474)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCC-CCCCCCCCceeeEEEEEec
Confidence              123444444433221 1125788888831     11         1235555554432 3344343344666665321


Q ss_pred             cCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccCCCC
Q 003796          262 ADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILKDPF  309 (795)
Q Consensus       262 ~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~dP~  309 (795)
                      .-      ..--+.|.|....+.+|..|.|--.| ..+|.+|..-..|+
T Consensus       257 ~~------~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v  299 (474)
T PRK05124        257 NL------DFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDL  299 (474)
T ss_pred             CC------cccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccc
Confidence            00      00115688887788999887665445 67888888665543

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.38  E-value=0.014  Score=67.39  Aligned_cols=172  Identities=15%  Similarity=0.153  Sum_probs=109.2

Q ss_pred             eeeEEEEeCCCC--C-hHHHHHHHhhhceEEEeeeCCCc-cccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCc-
Q 003796          122 RLRTSVLQAPHG--D-LVGCMEMAKVADLVAFVASASSF-SEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPT-  194 (795)
Q Consensus       122 k~Ritfie~~~~--d-l~~~LD~aKvADlVll~idas~g-~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~-  194 (795)
                      +++++|+.+| .  | +..|+-.+..||.+|||+||..| ++.    +|+  ..+.+.+.++++.|+|.+|.+++.+|. 
T Consensus        84 ~~~i~liDtP-Gh~df~~~~~~g~~~aD~aIlVVda~~G~~e~----g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         84 KYYCTVIDAP-GHRDFIKNMITGTSQADCAVLIIDSTTGGFEA----GISKDGQTREHALLAFTLGVKQMICCCNKMDAT  158 (447)
T ss_pred             CEEEEEEECC-CHHHHHHHHHhhhhhccEEEEEEEcccCceec----ccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence            5799999998 5  3 56788899999999999999965 111    122  688999999999999999999999984 


Q ss_pred             --ch-hh-hHHHHHHHHhhccccc--CCCCeeEEeCCHH--------H------HHHHHHHHhhccccCcccccCCCeEE
Q 003796          195 --DL-KK-RKDLKKMCISSLTSEF--PEDCKFYAADTKD--------E------LHKFLWLFKEQRLTVPHWRNQRPFLM  254 (795)
Q Consensus       195 --~~-Kk-~~~~kK~lk~~f~~ef--~~~~Klf~l~~~~--------E------~~nL~R~Is~~k~r~l~WR~~rpYmL  254 (795)
                        ++ +. -..+.+.++.++...-  +....++++|..+        +      .-.|+-.|.... .|-.+.+.---|.
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i~-~p~~~~~~plr~~  237 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIN-EPKRPSDKPLRLP  237 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhcC-CCccccCCCcEEE
Confidence              11 11 2345666766665421  2235667776311        0      113555555443 2333333222344


Q ss_pred             EEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796          255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEIL  305 (795)
Q Consensus       255 adr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~  305 (795)
                      ++++-..+     ..| .+++|-|-...+++|..|-+.-.| -.+|.+|+.-
T Consensus       238 I~~v~~~~-----g~G-~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~  283 (447)
T PLN00043        238 LQDVYKIG-----GIG-TVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH  283 (447)
T ss_pred             EEEEEEeC-----CcE-EEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC
Confidence            44443222     134 467999988889999888775444 3566666643

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=97.35  E-value=0.0062  Score=59.28  Aligned_cols=143  Identities=12%  Similarity=0.154  Sum_probs=84.8

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEec-CceeeEEEEeCCCCC--hHHHHH-HHhhhc
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSS-KYRLRTSVLQAPHGD--LVGCME-MAKVAD  146 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~-r~k~Ritfie~~~~d--l~~~LD-~aKvAD  146 (795)
                      +|+|+|+++.+.. +|    +..|+......          +...+... .....++|+.+| ..  +..+.+ ....||
T Consensus         2 ~i~iiG~~~~GKt-sl----i~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtp-G~~~~~~~~~~~~~~~d   75 (168)
T cd01887           2 VVTVMGHVDHGKT-TL----LDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTP-GHEAFTNMRARGASLTD   75 (168)
T ss_pred             EEEEEecCCCCHH-HH----HHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCC-CcHHHHHHHHHHHhhcC
Confidence            3899999998876 67    44443322111          11222221 014688999998 43  444444 668999


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc---ccCCCCeeEEe
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS---EFPEDCKFYAA  223 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~---ef~~~~Klf~l  223 (795)
                      ++|+++|++.+        ...+.++++..++..|.| ++.|++.+|........+...++.+...   .+.....++..
T Consensus        76 ~il~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (168)
T cd01887          76 IAILVVAADDG--------VMPQTIEAIKLAKAANVP-FIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPT  146 (168)
T ss_pred             EEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEe
Confidence            99999999854        456788899999999998 6778888885101112233333322211   12234577887


Q ss_pred             CC--HHHHHHHHHHHhh
Q 003796          224 DT--KDELHKFLWLFKE  238 (795)
Q Consensus       224 ~~--~~E~~nL~R~Is~  238 (795)
                      |.  ...+..|.-.|..
T Consensus       147 Sa~~~~gi~~l~~~l~~  163 (168)
T cd01887         147 SAKTGEGIDDLLEAILL  163 (168)
T ss_pred             ecccCCCHHHHHHHHHH
Confidence            73  2335555555543

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01889 SelB_euk SelB subfamily

Probab=97.34  E-value=0.0044  Score=62.70  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=73.1

Q ss_pred             eeeEEEEeCCCC--C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hh
Q 003796          122 RLRTSVLQAPHG--D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LK  197 (795)
Q Consensus       122 k~Ritfie~~~~--d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~K  197 (795)
                      ..+++|+.+| +  + +..++.+++.||.|++|+|++.|        ......+.+..++..|.| ++.|++.+|.. ..
T Consensus        67 ~~~~~i~Dtp-G~~~~~~~~~~~~~~~d~vi~VvD~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~  136 (192)
T cd01889          67 NLQITLVDCP-GHASLIRTIIGGAQIIDLMLLVVDATKG--------IQTQTAECLVIGEILCKK-LIVVLNKIDLIPEE  136 (192)
T ss_pred             CceEEEEECC-CcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECcccCCHH
Confidence            4688999998 4  3 35566778899999999999854        444556666677777875 66788988851 11


Q ss_pred             hhHHHHHHHHhhccccc----CCCCeeEEeCCH--HHHHHHHHHHhhccccCc
Q 003796          198 KRKDLKKMCISSLTSEF----PEDCKFYAADTK--DELHKFLWLFKEQRLTVP  244 (795)
Q Consensus       198 k~~~~kK~lk~~f~~ef----~~~~Klf~l~~~--~E~~nL~R~Is~~k~r~l  244 (795)
                      .+....+.++++|...+    ..+..+|++|..  .-+..|.-.|..+-+-|+
T Consensus       137 ~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~  189 (192)
T cd01889         137 ERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL  189 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence            22233444444333222    236789999853  336667777776666554

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK10218 GTP-binding protein; Provisional

Probab=97.32  E-value=0.022  Score=68.16  Aligned_cols=208  Identities=14%  Similarity=0.092  Sum_probs=132.2

Q ss_pred             EEEEEecCCCccChhhHHHHHHHh---hccCC-----------CC-CcceEEEe-----cCceeeEEEEeCCC-CCh-HH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQ---LSSEG-----------TG-ALSSTVSS-----SKYRLRTSVLQAPH-GDL-VG  137 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~---~~~~~-----------~~-~g~~tv~~-----~r~k~Ritfie~~~-~dl-~~  137 (795)
                      +-|+|+|..+.+++ +|++.|+..   +.+..           .+ ..-+|+.+     .-...+|.++.+|- .++ ..
T Consensus         6 RnIaIiGh~d~GKT-TLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          6 RNIAIIAHVDHGKT-TLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             eEEEEECCCCCcHH-HHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            56999999887775 665555532   11110           00 12234322     12257899999973 333 35


Q ss_pred             HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccc-cC-
Q 003796          138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSE-FP-  215 (795)
Q Consensus       138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~e-f~-  215 (795)
                      +..+++.||.+|||+|++.|        ....+...+..+...|+|. +.|++.+|.....-..+...++..|... .. 
T Consensus        85 v~~~l~~aDg~ILVVDa~~G--------~~~qt~~~l~~a~~~gip~-IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~  155 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDG--------PMPQTRFVTKKAFAYGLKP-IVVINKVDRPGARPDWVVDQVFDLFVNLDATD  155 (607)
T ss_pred             HHHHHHhCCEEEEEEecccC--------ccHHHHHHHHHHHHcCCCE-EEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence            67788999999999999965        5667888899999999996 5688988851122223444455554320 00 


Q ss_pred             --CCCeeEEeCCHH------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCC
Q 003796          216 --EDCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAH  281 (795)
Q Consensus       216 --~~~Klf~l~~~~------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~  281 (795)
                        .+..+++.|..+            .+..|+-.|...-|.|....+.-.-|++.++.+.+.     .|++ ++|-|-..
T Consensus       156 ~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~-----~G~i-~~gRV~sG  229 (607)
T PRK10218        156 EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSY-----VGVI-GIGRIKRG  229 (607)
T ss_pred             cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCC-----CcEE-EEEEEEeC
Confidence              123477777422            356788888887787765444444678887776532     3554 77877777


Q ss_pred             CCCCCCeEEeCCC-Cc---eeeceee
Q 003796          282 CLSVNQLVHISGA-GD---FQLGKIE  303 (795)
Q Consensus       282 ~l~~n~lVHIpG~-GD---fqi~~I~  303 (795)
                      .|++|+.|.++.- |.   ..|.+|.
T Consensus       230 ~lk~Gd~v~~~~~~~~~~~~rv~~l~  255 (607)
T PRK10218        230 KVKPNQQVTIIDSEGKTRNAKVGKVL  255 (607)
T ss_pred             cCcCCCEEEEecCCCcEeeEEEEEEE
Confidence            7999999999876 43   3344554

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.28  E-value=0.02  Score=69.13  Aligned_cols=171  Identities=12%  Similarity=0.069  Sum_probs=106.5

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-h
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-K  197 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-K  197 (795)
                      +++++|+-+|- .+ +..|+-.+..||++|||+|+..|        +...+.+.+.++...|.+.++.|++.+|. +. +
T Consensus       103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g--------~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~  174 (632)
T PRK05506        103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG--------VLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQ  174 (632)
T ss_pred             CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------ccccCHHHHHHHHHhCCCeEEEEEEecccccchh
Confidence            56889999872 23 34688889999999999999865        55667888888999999999999999885 11 1


Q ss_pred             h-hHHHHHHHHhhcccccCCCCeeEEeCCH-----HH---------HHHHHHHHhhccccCcccccCCCe-EEEEeeEec
Q 003796          198 K-RKDLKKMCISSLTSEFPEDCKFYAADTK-----DE---------LHKFLWLFKEQRLTVPHWRNQRPF-LMAQKVDVV  261 (795)
Q Consensus       198 k-~~~~kK~lk~~f~~ef~~~~Klf~l~~~-----~E---------~~nL~R~Is~~k~r~l~WR~~rpY-mLadr~e~~  261 (795)
                      . ...+++.++.++...-.....++++|..     .+         ...|+-.|....+ +-.+ ...|+ |-++++.-.
T Consensus       175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~-~~~~-~~~p~r~~i~~v~~~  252 (632)
T PRK05506        175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEI-ASDR-NLKDFRFPVQYVNRP  252 (632)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCC-CCCc-CCCCceeeEEEEEec
Confidence            1 1224444443332211134668888721     11         1234445554433 2222 34444 445554311


Q ss_pred             cCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccCCC
Q 003796          262 ADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILKDP  308 (795)
Q Consensus       262 ~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~dP  308 (795)
                      .      ....-+.|.|....+++|..|.|...| -..|.+|+.-..|
T Consensus       253 ~------~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~  294 (632)
T PRK05506        253 N------LDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGD  294 (632)
T ss_pred             C------CCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCce
Confidence            0      011226799998889999999886555 5667777755444

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.21  E-value=0.033  Score=66.41  Aligned_cols=215  Identities=10%  Similarity=0.175  Sum_probs=122.7

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---c-------ceEEEecCc-----------e-----eeEEEEeCC
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---L-------SSTVSSSKY-----------R-----LRTSVLQAP  131 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g-------~~tv~~~r~-----------k-----~Ritfie~~  131 (795)
                      || +|+|+|-++.+.+ +|    +..|+......   |       ...+.....           +     ..++|+-+|
T Consensus         4 ~p-iV~IiG~~d~GKT-SL----ln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTp   77 (590)
T TIGR00491         4 SP-IVSVLGHVDHGKT-TL----LDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTP   77 (590)
T ss_pred             CC-EEEEECCCCCCHH-HH----HHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECC
Confidence            45 6999999998886 67    55554333211   2       222211100           0     138899887


Q ss_pred             C-CChHHH-HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chh----------
Q 003796          132 H-GDLVGC-MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLK----------  197 (795)
Q Consensus       132 ~-~dl~~~-LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~K----------  197 (795)
                      - .++..| .-.+..||++|||+|++.|        +...+++.++.++..|+| ++.|++.+|.  .++          
T Consensus        78 G~e~f~~l~~~~~~~aD~~IlVvD~~~g--------~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~e~  148 (590)
T TIGR00491        78 GHEAFTNLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFMES  148 (590)
T ss_pred             CcHhHHHHHHHHHhhCCEEEEEEECCcC--------CCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHHHH
Confidence            3 234443 3356899999999999954        677899999999999998 5667777774  111          


Q ss_pred             ---hhHHHHHHHHhh------------ccc-------ccCCCCeeEEeCCHH--HHHHHHHHHhhccc----cCccccc-
Q 003796          198 ---KRKDLKKMCISS------------LTS-------EFPEDCKFYAADTKD--ELHKFLWLFKEQRL----TVPHWRN-  248 (795)
Q Consensus       198 ---k~~~~kK~lk~~------------f~~-------ef~~~~Klf~l~~~~--E~~nL~R~Is~~k~----r~l~WR~-  248 (795)
                         ....++..+..+            |..       ++.....++++|..+  -+..|+-.|.....    ..+.... 
T Consensus       149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~  228 (590)
T TIGR00491       149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEE  228 (590)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCC
Confidence               111222222111            111       244457888888422  23344444432111    2232221 


Q ss_pred             CCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCCCc
Q 003796          249 QRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNA  313 (795)
Q Consensus       249 ~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~dP~p~~~  313 (795)
                      ...-+.+.++-...      ....+++|-|....|++|..|=+-+.+-=...+|..+-+|-|+..
T Consensus       229 ~~~~~~V~e~~~~~------G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e  287 (590)
T TIGR00491       229 GPARGTILEVKEET------GLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEE  287 (590)
T ss_pred             CCeEEEEEEEEEcC------CCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCcccc
Confidence            22234444443322      124677999987779988877766554334567777878877654

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.18  E-value=0.038  Score=66.12  Aligned_cols=207  Identities=8%  Similarity=0.009  Sum_probs=127.6

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhh---ccC-----CCC------CcceEEE-------e---cCceeeEEEEeCCC-CC
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQL---SSE-----GTG------ALSSTVS-------S---SKYRLRTSVLQAPH-GD  134 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~---~~~-----~~~------~g~~tv~-------~---~r~k~Ritfie~~~-~d  134 (795)
                      +-|+|+|..+.+.+ +|++.|+...   +..     ...      +.-+|+.       .   +.....++|+.+|- .|
T Consensus         4 RNi~IIGh~d~GKT-TL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         4 RNFSIIAHIDHGKS-TLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eEEEEECCCCCCHH-HHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            56899999887775 6655545431   110     000      0112222       1   12236789998873 33


Q ss_pred             h-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccc
Q 003796          135 L-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSE  213 (795)
Q Consensus       135 l-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~e  213 (795)
                      + ..+....+.||.+|||+|++.|        ....+.+.+..+...|+| ++.|++.+|........+.+.++..+.. 
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g--------~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~~~~~~~el~~~lg~-  152 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQG--------IEAQTLANVYLALENDLE-IIPVINKIDLPSADPERVKKEIEEVIGL-  152 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCCccCHHHHHHHHHHHhCC-
Confidence            3 3456678899999999999965        555666666666678998 7778898885112222344455544431 


Q ss_pred             cCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEe
Q 003796          214 FPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHI  291 (795)
Q Consensus       214 f~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI  291 (795)
                       . ...+|..|.  ..-+..|+..|...-|.|...-+...-+++....+.+      .....++|-|....|++|..|.+
T Consensus       153 -~-~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~------~~G~v~~~rV~sG~lk~Gd~v~~  224 (595)
T TIGR01393       153 -D-ASEAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDN------YRGVVALVRVFEGTIKPGDKIRF  224 (595)
T ss_pred             -C-cceEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeC------CCcEEEEEEEECCEEecCCEEEE
Confidence             1 234777774  3346667777777667776543333334555554433      23456888888888999999988


Q ss_pred             CCCC-ceeeceeecc
Q 003796          292 SGAG-DFQLGKIEIL  305 (795)
Q Consensus       292 pG~G-Dfqi~~I~~~  305 (795)
                      ..-| -+.+.+|...
T Consensus       225 ~~~~~~~~v~~i~~~  239 (595)
T TIGR01393       225 MSTGKEYEVDEVGVF  239 (595)
T ss_pred             ecCCCeeEEeEEEEe
Confidence            7766 5788888743

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=97.09  E-value=0.0095  Score=61.43  Aligned_cols=64  Identities=16%  Similarity=0.219  Sum_probs=52.9

Q ss_pred             eeeEEEEeCCCC--Ch-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          122 RLRTSVLQAPHG--DL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       122 k~Ritfie~~~~--dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+++.|+.+| .  ++ ..++.+++.||.+|||+|++.|        +...+.+.+..++..|.|.+|.|++.+|.
T Consensus        76 ~~~~~liDTp-G~~~~~~~~~~~~~~ad~~llVvD~~~~--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~  142 (208)
T cd04166          76 KRKFIIADTP-GHEQYTRNMVTGASTADLAILLVDARKG--------VLEQTRRHSYILSLLGIRHVVVAVNKMDL  142 (208)
T ss_pred             CceEEEEECC-cHHHHHHHHHHhhhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence            4688999887 4  33 4688889999999999999964        55667778888888899999999999985

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=97.03  E-value=0.054  Score=64.93  Aligned_cols=166  Identities=7%  Similarity=0.001  Sum_probs=109.7

Q ss_pred             eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      ...++|+.+|- .|+ ..+..+...||.+|||+|++.|        .+..+.+.+..+...|+| ++.|++.+|......
T Consensus        73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g--------v~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~~  143 (600)
T PRK05433         73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENDLE-IIPVLNKIDLPAADP  143 (600)
T ss_pred             cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEEEECCCCCcccH
Confidence            46788998872 233 3456678899999999999965        566777777777888999 778899988511112


Q ss_pred             HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 003796          200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY  277 (795)
Q Consensus       200 ~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy  277 (795)
                      ..+.+.++..+..  + ...+++.|.  ..-+..|+..|...-|.|...-+...-+++-...+.+      .....++|-
T Consensus       144 ~~v~~ei~~~lg~--~-~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~------~~G~v~~~r  214 (600)
T PRK05433        144 ERVKQEIEDVIGI--D-ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDN------YRGVVVLVR  214 (600)
T ss_pred             HHHHHHHHHHhCC--C-cceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecC------CCceEEEEE
Confidence            2334444444321  1 234788884  3346667777776667665444444444555544433      234567899


Q ss_pred             EeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796          278 LRAHCLSVNQLVHISGAG-DFQLGKIEIL  305 (795)
Q Consensus       278 vRG~~l~~n~lVHIpG~G-Dfqi~~I~~~  305 (795)
                      |-...|++|..|.+..-| .+.+.+|...
T Consensus       215 V~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~  243 (600)
T PRK05433        215 VVDGTLKKGDKIKMMSTGKEYEVDEVGVF  243 (600)
T ss_pred             EEcCEEecCCEEEEecCCceEEEEEeecc
Confidence            888889999999876655 6888888743

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.01  E-value=0.067  Score=63.93  Aligned_cols=212  Identities=12%  Similarity=0.111  Sum_probs=118.9

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCC---CcceEEE-------ec------Cc----------eeeEEEEeCCC-
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG---ALSSTVS-------SS------KY----------RLRTSVLQAPH-  132 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~g~~tv~-------~~------r~----------k~Ritfie~~~-  132 (795)
                      -+|+|+|..+.+.+ +|    +..|++....   .|-+|-.       ..      ..          ...++|+.+|- 
T Consensus         7 p~V~i~Gh~~~GKT-SL----l~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          7 PIVVVLGHVDHGKT-TL----LDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             cEEEEECCCCCCHH-HH----HHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            36999999998886 67    5555443322   1222211       00      00          01378998873 


Q ss_pred             CChHHHHH-HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhh-----------
Q 003796          133 GDLVGCME-MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKK-----------  198 (795)
Q Consensus       133 ~dl~~~LD-~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~Kk-----------  198 (795)
                      .++..+.. .+..||++||++|++.|        +...+++.++.++..|+| ++.|++.+|.  .+..           
T Consensus        82 e~f~~~~~~~~~~aD~~IlVvDa~~g--------~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~~e~~~  152 (586)
T PRK04004         82 EAFTNLRKRGGALADIAILVVDINEG--------FQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPFLESIE  152 (586)
T ss_pred             HHHHHHHHHhHhhCCEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchHHHHHh
Confidence            34444433 56889999999999965        778899999999999999 6677887774  1211           


Q ss_pred             --hHHHHH-------HHHhhc-----cc-------ccCCCCeeEEeCC-----HHHHHHHHHHHhhc-cccCccccc-CC
Q 003796          199 --RKDLKK-------MCISSL-----TS-------EFPEDCKFYAADT-----KDELHKFLWLFKEQ-RLTVPHWRN-QR  250 (795)
Q Consensus       199 --~~~~kK-------~lk~~f-----~~-------ef~~~~Klf~l~~-----~~E~~nL~R~Is~~-k~r~l~WR~-~r  250 (795)
                        ...++.       .+..++     +.       ++.....++.+|.     -.|++..+-.++.. -+.++.... ..
T Consensus       153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~  232 (586)
T PRK04004        153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGP  232 (586)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence              011111       111222     22       2344566788873     33433332222221 122343322 22


Q ss_pred             CeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCC
Q 003796          251 PFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPL  311 (795)
Q Consensus       251 pYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~dP~p~  311 (795)
                      ..+.+.++...+.     .| .+++|-|....|++|..|.+-+.+--...+|..+-+|-|+
T Consensus       233 ~~~~V~ev~~~~g-----~G-~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~  287 (586)
T PRK04004        233 GKGTVLEVKEERG-----LG-TTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPL  287 (586)
T ss_pred             eEEEEEEEEEeCC-----Cc-eEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcch
Confidence            3444555443321     23 5689999888899999987765532112355555555444

>cd01895 EngA2 EngA2 subfamily

Probab=96.97  E-value=0.026  Score=54.64  Aligned_cols=133  Identities=14%  Similarity=0.117  Sum_probs=78.1

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhcc--CCCCC-----cceEEEecCceeeEEEEeCCCC--------Ch-----HHH
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSS--EGTGA-----LSSTVSSSKYRLRTSVLQAPHG--------DL-----VGC  138 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~--~~~~~-----g~~tv~~~r~k~Ritfie~~~~--------dl-----~~~  138 (795)
                      |.-|+++|.++.+.. +|++.|++....  .+...     ....+...  ..+++++.+|.-        .+     ..+
T Consensus         2 ~~~i~i~G~~~~GKs-tli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKS-SLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHH-HHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHH
Confidence            667999999998875 674444432100  00000     11223333  357899999731        11     234


Q ss_pred             HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh---hhHHHHHHHHhhcccccC
Q 003796          139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK---KRKDLKKMCISSLTSEFP  215 (795)
Q Consensus       139 LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K---k~~~~kK~lk~~f~~ef~  215 (795)
                      +.+..-||++|+++|++.+        ...+...++..+..+|.| ++.|+++.|....   ......+.+++.+...  
T Consensus        79 ~~~~~~~d~vi~v~d~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--  147 (174)
T cd01895          79 LKAIERADVVLLVIDATEG--------ITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL--  147 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCC--------cchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcccc--
Confidence            4566789999999999854        334455777777778865 5567888885111   1233455555554321  


Q ss_pred             CCCeeEEeCC
Q 003796          216 EDCKFYAADT  225 (795)
Q Consensus       216 ~~~Klf~l~~  225 (795)
                      ...++|.+|.
T Consensus       148 ~~~~~~~~Sa  157 (174)
T cd01895         148 DYAPIVFISA  157 (174)
T ss_pred             cCCceEEEec
Confidence            2578888884

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=96.92  E-value=0.015  Score=62.71  Aligned_cols=81  Identities=11%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh
Q 003796          122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK  198 (795)
Q Consensus       122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk  198 (795)
                      +.++.|+.+| .-   ...+.-+...||.+|||+||+.|        ....+.++++.++.+|.|.+ .+++.+|.....
T Consensus        63 ~~~i~liDTP-G~~df~~~~~~~l~~aD~ailVVDa~~g--------~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a~  132 (270)
T cd01886          63 DHRINIIDTP-GHVDFTIEVERSLRVLDGAVAVFDAVAG--------VEPQTETVWRQADRYNVPRI-AFVNKMDRTGAD  132 (270)
T ss_pred             CEEEEEEECC-CcHHHHHHHHHHHHHcCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC
Confidence            4689999998 53   35677789999999999999965        67788999999999999975 589988852122


Q ss_pred             hHHHHHHHHhhccc
Q 003796          199 RKDLKKMCISSLTS  212 (795)
Q Consensus       199 ~~~~kK~lk~~f~~  212 (795)
                      ...+...++.++..
T Consensus       133 ~~~~~~~l~~~l~~  146 (270)
T cd01886         133 FFRVVEQIREKLGA  146 (270)
T ss_pred             HHHHHHHHHHHhCC
Confidence            33455666665543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK00089 era GTPase Era; Reviewed

Probab=96.90  E-value=0.022  Score=61.76  Aligned_cols=142  Identities=14%  Similarity=0.168  Sum_probs=84.5

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-----------hHHHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-----------LVGCM  139 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~~d-----------l~~~L  139 (795)
                      +|+|+|+++++.+ +|    +..+.+.....          ....+... -...+.|+.+| .-           ...+.
T Consensus         7 ~V~iiG~pn~GKS-TL----in~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTP-G~~~~~~~l~~~~~~~~~   79 (292)
T PRK00089          7 FVAIVGRPNVGKS-TL----LNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTP-GIHKPKRALNRAMNKAAW   79 (292)
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECC-CCCCchhHHHHHHHHHHH
Confidence            6999999998886 77    44444332210          11112221 13578999987 31           12344


Q ss_pred             HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 003796          140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCK  219 (795)
Q Consensus       140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~K  219 (795)
                      .+..-||++|+++|++.+        +.....+++..|+..+.| ++.|++..|.. +........++ .+...++ ...
T Consensus        80 ~~~~~~D~il~vvd~~~~--------~~~~~~~i~~~l~~~~~p-vilVlNKiDl~-~~~~~l~~~~~-~l~~~~~-~~~  147 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEK--------IGPGDEFILEKLKKVKTP-VILVLNKIDLV-KDKEELLPLLE-ELSELMD-FAE  147 (292)
T ss_pred             HHHhcCCEEEEEEeCCCC--------CChhHHHHHHHHhhcCCC-EEEEEECCcCC-CCHHHHHHHHH-HHHhhCC-CCe
Confidence            567789999999999843        556667888888877777 55678988861 12122222222 1222222 567


Q ss_pred             eEEeCC--HHHHHHHHHHHhhccc
Q 003796          220 FYAADT--KDELHKFLWLFKEQRL  241 (795)
Q Consensus       220 lf~l~~--~~E~~nL~R~Is~~k~  241 (795)
                      +|.+|.  ...+..|...|...-+
T Consensus       148 i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        148 IVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhCC
Confidence            888884  3345666666665544

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=96.89  E-value=0.015  Score=62.37  Aligned_cols=78  Identities=14%  Similarity=0.154  Sum_probs=57.9

Q ss_pred             eeEEEEeCCCCCh---HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          123 LRTSVLQAPHGDL---VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       123 ~Ritfie~~~~dl---~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      .+++++.|| ...   ..+..++..||.+|+++|++.|        ....+..+++.+...|+|.++ |++.+|......
T Consensus        64 ~~i~liDtP-G~~~f~~~~~~~l~~aD~~i~Vvd~~~g--------~~~~~~~~~~~~~~~~~p~ii-vvNK~D~~~~~~  133 (268)
T cd04170          64 HKINLIDTP-GYADFVGETRAALRAADAALVVVSAQSG--------VEVGTEKLWEFADEAGIPRII-FINKMDRERADF  133 (268)
T ss_pred             EEEEEEECc-CHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCEEE-EEECCccCCCCH
Confidence            588999998 432   5588899999999999999965        566778889999999999776 889988621222


Q ss_pred             HHHHHHHHhhc
Q 003796          200 KDLKKMCISSL  210 (795)
Q Consensus       200 ~~~kK~lk~~f  210 (795)
                      ..+...++..|
T Consensus       134 ~~~~~~l~~~~  144 (268)
T cd04170         134 DKTLAALQEAF  144 (268)
T ss_pred             HHHHHHHHHHh
Confidence            33444555444

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.88  E-value=0.027  Score=64.53  Aligned_cols=132  Identities=14%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc----eEEEecCceeeEEEEeCCCCC-------------
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS----STVSSSKYRLRTSVLQAPHGD-------------  134 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~----~tv~~~r~k~Ritfie~~~~d-------------  134 (795)
                      ..++-|+|+|.++.+.. +|    +..+...+.   ..  |.    +........+++.++.+| +-             
T Consensus       171 ~~~~~v~ivG~~n~GKS-tl----in~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~-G~~~~~~~~~~~e~~  244 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKS-SL----INALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTA-GIRRKGKVTEGVEKY  244 (435)
T ss_pred             ccceEEEEECCCCCCHH-HH----HHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECC-CCCCCcchhhHHHHH
Confidence            45778999999998886 77    444443321   11  11    111111224678999987 41             


Q ss_pred             -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hhhhHHHHHHHHhhccc
Q 003796          135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKKRKDLKKMCISSLTS  212 (795)
Q Consensus       135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~Kk~~~~kK~lk~~f~~  212 (795)
                       ...++.+...||++|+|+|++.|        +......++..+..+|.| ++.|++..|.. .......++.+...+..
T Consensus       245 ~~~~~~~~~~~ad~~ilViD~~~~--------~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~  315 (435)
T PRK00093        245 SVIRTLKAIERADVVLLVIDATEG--------ITEQDLRIAGLALEAGRA-LVIVVNKWDLVDEKTMEEFKKELRRRLPF  315 (435)
T ss_pred             HHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECccCCCHHHHHHHHHHHHHhccc
Confidence             23456788899999999999965        666778899999999987 55578877751 12234455556555532


Q ss_pred             ccCCCCeeEEeCC
Q 003796          213 EFPEDCKFYAADT  225 (795)
Q Consensus       213 ef~~~~Klf~l~~  225 (795)
                       + ....++.+|.
T Consensus       316 -~-~~~~i~~~SA  326 (435)
T PRK00093        316 -L-DYAPIVFISA  326 (435)
T ss_pred             -c-cCCCEEEEeC
Confidence             2 2578888884

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.84  E-value=0.029  Score=63.41  Aligned_cols=163  Identities=15%  Similarity=0.183  Sum_probs=112.4

Q ss_pred             eeEEEEeCCC--CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh
Q 003796          123 LRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR  199 (795)
Q Consensus       123 ~Ritfie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~  199 (795)
                      .+++||.+|.  .=|.+||+.+-..|..||+|++..|        ....|-|.|-+|..-|+++.+.|||..|. +..+.
T Consensus        50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~  121 (447)
T COG3276          50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARI  121 (447)
T ss_pred             CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHhcCCCceEEEEeccccccHHHH
Confidence            5899999974  5589999999999999999999854        88999999999999999999999999885 32333


Q ss_pred             HHHHHHHHhhcccccCCCCeeEEeCC-----HHHHHHHHHHHhhccccCcccccCCCeEE-EEeeEeccCCCCCCCceEE
Q 003796          200 KDLKKMCISSLTSEFPEDCKFYAADT-----KDELHKFLWLFKEQRLTVPHWRNQRPFLM-AQKVDVVADDCNSGKCTLL  273 (795)
Q Consensus       200 ~~~kK~lk~~f~~ef~~~~Klf~l~~-----~~E~~nL~R~Is~~k~r~l~WR~~rpYmL-adr~e~~~~~~~~~~~~l~  273 (795)
                      ....+.+.....   ...+++|..|-     -.|+.|-+=.+..    ...=-.+.|+-+ +||+=-..     ..| .+
T Consensus       122 e~~i~~Il~~l~---l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~----~~e~d~~~~fri~IDraFtVK-----GvG-TV  188 (447)
T COG3276         122 EQKIKQILADLS---LANAKIFKTSAKTGRGIEELKNELIDLLE----EIERDEQKPFRIAIDRAFTVK-----GVG-TV  188 (447)
T ss_pred             HHHHHHHHhhcc---cccccccccccccCCCHHHHHHHHHHhhh----hhhhccCCceEEEEeeEEEec-----ccc-EE
Confidence            334444444444   33788888772     2222222222222    222223455555 56643222     123 56


Q ss_pred             EEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 003796          274 LHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK  306 (795)
Q Consensus       274 v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~  306 (795)
                      |+|++--....+|.-+-+-++| .-+|.+|....
T Consensus       189 VtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d  222 (447)
T COG3276         189 VTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHD  222 (447)
T ss_pred             EEeEEeeeeEEECCEEEEecCCCeEEEEeeeecC
Confidence            7888765557788888888888 77888887654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=96.76  E-value=0.021  Score=59.43  Aligned_cols=102  Identities=19%  Similarity=0.216  Sum_probs=66.7

Q ss_pred             eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc---
Q 003796          122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD---  195 (795)
Q Consensus       122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~---  195 (795)
                      ..+++|+.+| ..   +..++.+++.||.+|||+|++.+.. +..-+...++.+.+..++..|.|.++.|++.+|..   
T Consensus        76 ~~~i~liDtp-G~~~~~~~~~~~~~~~d~~i~VvDa~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~  153 (219)
T cd01883          76 KYRFTILDAP-GHRDFVPNMITGASQADVAVLVVDARKGEF-EAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVN  153 (219)
T ss_pred             CeEEEEEECC-ChHHHHHHHHHHhhhCCEEEEEEECCCCcc-ccccccccchHHHHHHHHHcCCCeEEEEEEcccccccc
Confidence            5789999998 42   4567888899999999999996410 00001234667777778888999999999988851   


Q ss_pred             h-h-hhHHHHHHHHhhcccccC--CCCeeEEeCC
Q 003796          196 L-K-KRKDLKKMCISSLTSEFP--EDCKFYAADT  225 (795)
Q Consensus       196 ~-K-k~~~~kK~lk~~f~~ef~--~~~Klf~l~~  225 (795)
                      + . ....+.+.++.++...-.  ....++++|.
T Consensus       154 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA  187 (219)
T cd01883         154 WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISG  187 (219)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeec
Confidence            0 1 123455555555543211  2466888773

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04169 RF3 RF3 subfamily

Probab=96.72  E-value=0.022  Score=61.39  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=51.5

Q ss_pred             eeeEEEEeCCC-CChHH-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       122 k~Ritfie~~~-~dl~~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +.++.|+.+|- .++.. +..+.+.||.+|+|+|++.|        ++.++..+++.++..|+| ++.+++.+|.
T Consensus        70 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g--------~~~~~~~i~~~~~~~~~P-~iivvNK~D~  135 (267)
T cd04169          70 DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------VEPQTRKLFEVCRLRGIP-IITFINKLDR  135 (267)
T ss_pred             CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------ccHHHHHHHHHHHhcCCC-EEEEEECCcc
Confidence            57899999873 23333 67788999999999999854        677788899999999999 6668898885

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=96.68  E-value=0.027  Score=59.57  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      +.+++|+.+|- .+ ...+..+.+.||.+|||+|++.|        +..++.++++.++.+|+|.+ .|++.+|......
T Consensus        63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g--------~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a~~  133 (237)
T cd04168          63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG--------VQAQTRILWRLLRKLNIPTI-IFVNKIDRAGADL  133 (237)
T ss_pred             CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCEE-EEEECccccCCCH
Confidence            57899999973 23 34577788999999999999965        66788999999999999975 5888888521122


Q ss_pred             HHHHHHHHhhcc
Q 003796          200 KDLKKMCISSLT  211 (795)
Q Consensus       200 ~~~kK~lk~~f~  211 (795)
                      .++...++.+|.
T Consensus       134 ~~~~~~i~~~~~  145 (237)
T cd04168         134 EKVYQEIKEKLS  145 (237)
T ss_pred             HHHHHHHHHHHC
Confidence            445666665553

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=96.54  E-value=0.043  Score=54.83  Aligned_cols=131  Identities=14%  Similarity=0.131  Sum_probs=76.8

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCC-C-----CCcceEEEec--CceeeEEEEeCCCCC------------hH
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-T-----GALSSTVSSS--KYRLRTSVLQAPHGD------------LV  136 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~-----~~g~~tv~~~--r~k~Ritfie~~~~d------------l~  136 (795)
                      ..|. |+|+|.++.+.. +|    +..++... .     ..|. |....  .....+.|+..| .-            +.
T Consensus        17 ~~~~-i~ivG~~~~GKS-tl----in~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        17 DGPE-IAFAGRSNVGKS-SL----INALTNRKKLARTSKTPGR-TQLINFFEVNDGFRLVDLP-GYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             CCCE-EEEEcCCCCCHH-HH----HHHHhCCCCcccccCCCCc-ceEEEEEEeCCcEEEEeCC-CCccccCChhHHHHHH
Confidence            4454 689999998886 77    55554432 1     1122 21111  012468888887 41            22


Q ss_pred             HHH----HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcc
Q 003796          137 GCM----EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLT  211 (795)
Q Consensus       137 ~~L----D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~  211 (795)
                      .++    ..+..+|.+|+++|++.+        +.....++++.|...|+| ++.|++++|. +..........++..+.
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~--------~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~i~~~l~  159 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHP--------LKELDLEMLEWLRERGIP-VLIVLTKADKLKKSELNKQLKKIKKALK  159 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHh
Confidence            222    223357899999999854        666667888999999998 7788899885 11212223333444444


Q ss_pred             cccCCCCeeEEeCC
Q 003796          212 SEFPEDCKFYAADT  225 (795)
Q Consensus       212 ~ef~~~~Klf~l~~  225 (795)
                      ... ...++|..|.
T Consensus       160 ~~~-~~~~v~~~Sa  172 (179)
T TIGR03598       160 KDA-DDPSVQLFSS  172 (179)
T ss_pred             hcc-CCCceEEEEC
Confidence            332 2357787764

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=96.52  E-value=0.061  Score=61.48  Aligned_cols=132  Identities=15%  Similarity=0.152  Sum_probs=83.1

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----ceEEEecCceeeEEEEeCCCCC-------------
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----SSTVSSSKYRLRTSVLQAPHGD-------------  134 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~~tv~~~r~k~Ritfie~~~~d-------------  134 (795)
                      ..+.-|+|+|.++.+.. +|    +..+...+.   ..  |    ++........++++++..| .-             
T Consensus       170 ~~~~~v~ivG~~~~GKS-sL----in~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~-G~~~~~~~~~~~e~~  243 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKS-TL----VNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTA-GIRRKGKVTEGVEKY  243 (429)
T ss_pred             CCceEEEEECCCCCCHH-HH----HHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECC-CccccccchhhHHHH
Confidence            34567999999998875 67    444433221   11  1    1112211123588999887 41             


Q ss_pred             -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhHHHHHHHHhhcc
Q 003796          135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLT  211 (795)
Q Consensus       135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~Kk~~~~kK~lk~~f~  211 (795)
                       ....+.+.+-||++|+|+|++.|        +.....+++..+..+|.| ++.|++..|.  +.......++.+...+.
T Consensus       244 ~~~~~~~~~~~ad~~ilV~D~~~~--------~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~  314 (429)
T TIGR03594       244 SVLRTLKAIERADVVLLVLDATEG--------ITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKLP  314 (429)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhcc
Confidence             12345678899999999999965        666778899999999987 5557887775  11223345555655543


Q ss_pred             cccCCCCeeEEeCC
Q 003796          212 SEFPEDCKFYAADT  225 (795)
Q Consensus       212 ~ef~~~~Klf~l~~  225 (795)
                      ..  .+..++.+|.
T Consensus       315 ~~--~~~~vi~~SA  326 (429)
T TIGR03594       315 FL--DFAPIVFISA  326 (429)
T ss_pred             cC--CCCceEEEeC
Confidence            32  2578888884

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=96.46  E-value=0.11  Score=52.68  Aligned_cols=133  Identities=15%  Similarity=0.150  Sum_probs=77.3

Q ss_pred             EEEEEecCCCccChhhHHHHHHH---hhccCCC-------------CCc------ceEEEecCceeeEEEEeCCC-CChH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLR---QLSSEGT-------------GAL------SSTVSSSKYRLRTSVLQAPH-GDLV  136 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk---~~~~~~~-------------~~g------~~tv~~~r~k~Ritfie~~~-~dl~  136 (795)
                      +-|+|+|.++.+.. +|++.|+.   .+.....             ..|      .+.+..  .+.+++|+.+|- .++.
T Consensus         3 r~i~ivG~~~~GKT-sL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~   79 (194)
T cd01891           3 RNIAIIAHVDHGKT-TLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY--KDTKINIVDTPGHADFG   79 (194)
T ss_pred             cEEEEEecCCCCHH-HHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE--CCEEEEEEECCCcHHHH
Confidence            56999999998875 67555453   1111110             001      122222  357899999983 2344


Q ss_pred             H-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc---
Q 003796          137 G-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS---  212 (795)
Q Consensus       137 ~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~---  212 (795)
                      + +.-.++-||.+|+|+|++.+        .......+|..+..+|+| ++.|++.+|........+...++.++..   
T Consensus        80 ~~~~~~~~~~d~~ilV~d~~~~--------~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (194)
T cd01891          80 GEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPDARPEEVVDEVFDLFIELGA  150 (194)
T ss_pred             HHHHHHHHhcCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            4 34557899999999999854        334456667777778999 5667998885112222233334433321   


Q ss_pred             ccC-CCCeeEEeC
Q 003796          213 EFP-EDCKFYAAD  224 (795)
Q Consensus       213 ef~-~~~Klf~l~  224 (795)
                      ... .+..++..|
T Consensus       151 ~~~~~~~~iv~~S  163 (194)
T cd01891         151 TEEQLDFPVLYAS  163 (194)
T ss_pred             ccccCccCEEEee
Confidence            100 145777777

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00881 GTP_translation_factor GTP translation factor family

Probab=96.41  E-value=0.13  Score=50.71  Aligned_cols=108  Identities=17%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             eeeEEEEeCCCC--Ch-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch-h
Q 003796          122 RLRTSVLQAPHG--DL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL-K  197 (795)
Q Consensus       122 k~Ritfie~~~~--dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~-K  197 (795)
                      +.+++|+.+| .  ++ .....+.+.||.+|+++|++.+        ...+..+++..+...+.| ++.|++..|.-. -
T Consensus        61 ~~~~~liDtp-G~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~~  130 (189)
T cd00881          61 DRRVNFIDTP-GHEDFSSEVIRGLSVSDGAILVVDANEG--------VQPQTREHLRIAREGGLP-IIVAINKIDRVGEE  130 (189)
T ss_pred             CEEEEEEeCC-CcHHHHHHHHHHHHhcCEEEEEEECCCC--------CcHHHHHHHHHHHHCCCC-eEEEEECCCCcchh
Confidence            4689999997 4  23 3355667889999999999854        555667788888776766 666778777511 1


Q ss_pred             hhHHHHHHHHhhcccc-----------cCCCCeeEEeCCH--HHHHHHHHHHhhc
Q 003796          198 KRKDLKKMCISSLTSE-----------FPEDCKFYAADTK--DELHKFLWLFKEQ  239 (795)
Q Consensus       198 k~~~~kK~lk~~f~~e-----------f~~~~Klf~l~~~--~E~~nL~R~Is~~  239 (795)
                      ......+.++..+...           .+....+|.+|..  ..+..|...|+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~  185 (189)
T cd00881         131 DLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH  185 (189)
T ss_pred             cHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence            1222333344333321           2336778888842  3456666666544

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15494 era GTPase Era; Provisional

Probab=96.34  E-value=0.099  Score=58.29  Aligned_cols=140  Identities=16%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCC-----C----cceE--EEecCceeeEEEEeCCCCC------hH-HHH-
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----A----LSST--VSSSKYRLRTSVLQAPHGD------LV-GCM-  139 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~----g~~t--v~~~r~k~Ritfie~~~~d------l~-~~L-  139 (795)
                      ..-|+|+|.++.+.+ +|    +..|......     .    +.++  +..+  ...+.|+.+| .-      +. .|. 
T Consensus        52 ~~kV~ivG~~nvGKS-TL----in~l~~~k~~ivs~k~~tTr~~~~~~~~~~--~~qi~~~DTp-G~~~~~~~l~~~~~r  123 (339)
T PRK15494         52 TVSVCIIGRPNSGKS-TL----LNRIIGEKLSIVTPKVQTTRSIITGIITLK--DTQVILYDTP-GIFEPKGSLEKAMVR  123 (339)
T ss_pred             eeEEEEEcCCCCCHH-HH----HHHHhCCceeeccCCCCCccCcEEEEEEeC--CeEEEEEECC-CcCCCcccHHHHHHH
Confidence            346899999998876 67    3333322211     0    1121  1222  3578999987 43      22 232 


Q ss_pred             ---HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCC
Q 003796          140 ---EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPE  216 (795)
Q Consensus       140 ---D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~  216 (795)
                         .++.-||+||||+|++.+        |+.....+++.++..+.|.++ |++.+|...+......+.++.    .. .
T Consensus       124 ~~~~~l~~aDvil~VvD~~~s--------~~~~~~~il~~l~~~~~p~Il-ViNKiDl~~~~~~~~~~~l~~----~~-~  189 (339)
T PRK15494        124 CAWSSLHSADLVLLIIDSLKS--------FDDITHNILDKLRSLNIVPIF-LLNKIDIESKYLNDIKAFLTE----NH-P  189 (339)
T ss_pred             HHHHHhhhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCCEEE-EEEhhcCccccHHHHHHHHHh----cC-C
Confidence               346789999999998843        766667788888888988764 789888511222233333332    22 2


Q ss_pred             CCeeEEeCC--HHHHHHHHHHHhhcc
Q 003796          217 DCKFYAADT--KDELHKFLWLFKEQR  240 (795)
Q Consensus       217 ~~Klf~l~~--~~E~~nL~R~Is~~k  240 (795)
                      ...+|.+|.  ...+..|...|...-
T Consensus       190 ~~~i~~iSAktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        190 DSLLFPISALSGKNIDGLLEYITSKA  215 (339)
T ss_pred             CcEEEEEeccCccCHHHHHHHHHHhC
Confidence            467888874  334555555665443

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.31  E-value=0.058  Score=62.38  Aligned_cols=149  Identities=17%  Similarity=0.213  Sum_probs=95.6

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecC-ceeeEEEEeCCCCChHHHHH--HHhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSK-YRLRTSVLQAPHGDLVGCME--MAKV  144 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r-~k~Ritfie~~~~dl~~~LD--~aKv  144 (795)
                      -|-||+|+|==..+.. +|    +..+.+.+...          |-+++..+. .-..||||.-|.---.+.+-  -|++
T Consensus         4 R~PvVtimGHVDHGKT-tL----LD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~v   78 (509)
T COG0532           4 RPPVVTIMGHVDHGKT-TL----LDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASV   78 (509)
T ss_pred             CCCEEEEeCcccCCcc-ch----hhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcc
Confidence            3557999997555544 55    66665554332          444455431 13689999887422333333  3799


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHh-hccccc-CCCCeeEE
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCIS-SLTSEF-PEDCKFYA  222 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~-~f~~ef-~~~~Klf~  222 (795)
                      +|+++|++++..|        +-..|.|-++.+++.|.|-++.+ +.+|.-...--+++..|+. =|..|- .....+.+
T Consensus        79 tDIaILVVa~dDG--------v~pQTiEAI~hak~a~vP~iVAi-NKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~Vp  149 (509)
T COG0532          79 TDIAILVVAADDG--------VMPQTIEAINHAKAAGVPIVVAI-NKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVP  149 (509)
T ss_pred             ccEEEEEEEccCC--------cchhHHHHHHHHHHCCCCEEEEE-ecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEE
Confidence            9999999999965        88999999999999999988876 3333200111123333332 344443 33466677


Q ss_pred             eC-----CHHHHHHHHHHHhhcc
Q 003796          223 AD-----TKDELHKFLWLFKEQR  240 (795)
Q Consensus       223 l~-----~~~E~~nL~R~Is~~k  240 (795)
                      .|     +..|.+.+++.++.+.
T Consensus       150 vSA~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         150 VSAKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             eeccCCCCHHHHHHHHHHHHHHH
Confidence            77     5788888888888766

>TIGR00436 era GTP-binding protein Era

Probab=96.30  E-value=0.081  Score=56.89  Aligned_cols=139  Identities=12%  Similarity=0.117  Sum_probs=78.2

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC---C------cce-EEEecCceeeEEEEeCCCC-----ChH-----HHHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSS-TVSSSKYRLRTSVLQAPHG-----DLV-----GCME  140 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~------g~~-tv~~~r~k~Ritfie~~~~-----dl~-----~~LD  140 (795)
                      .|+|+|.++.+.+ +|    +..+++.+..   .      ..+ .+.... ...+.|+..|--     .+.     .+..
T Consensus         2 ~V~liG~pnvGKS-TL----ln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~   75 (270)
T TIGR00436         2 FVAILGRPNVGKS-TL----LNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARS   75 (270)
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHH
Confidence            4899999998875 77    4444333211   1      111 122221 345899998721     122     2345


Q ss_pred             HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF  220 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl  220 (795)
                      +++-||+||+|+|++.+        ...+ ..+++.|+..+.| ++.|++..|.  .........+..+...  ....++
T Consensus        76 ~l~~aDvvl~VvD~~~~--------~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl--~~~~~~~~~~~~~~~~--~~~~~v  141 (270)
T TIGR00436        76 AIGGVDLILFVVDSDQW--------NGDG-EFVLTKLQNLKRP-VVLTRNKLDN--KFKDKLLPLIDKYAIL--EDFKDI  141 (270)
T ss_pred             HHhhCCEEEEEEECCCC--------CchH-HHHHHHHHhcCCC-EEEEEECeeC--CCHHHHHHHHHHHHhh--cCCCce
Confidence            67889999999999853        1122 6678888888887 5678888886  1112222222222111  123478


Q ss_pred             EEeCC--HHHHHHHHHHHhhc
Q 003796          221 YAADT--KDELHKFLWLFKEQ  239 (795)
Q Consensus       221 f~l~~--~~E~~nL~R~Is~~  239 (795)
                      |.+|.  ...+..|...|...
T Consensus       142 ~~iSA~~g~gi~~L~~~l~~~  162 (270)
T TIGR00436       142 VPISALTGDNTSFLAAFIEVH  162 (270)
T ss_pred             EEEecCCCCCHHHHHHHHHHh
Confidence            88883  23344555555443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=96.19  E-value=0.27  Score=62.14  Aligned_cols=177  Identities=12%  Similarity=0.137  Sum_probs=109.9

Q ss_pred             eEEEEeCCC-CChHHH-HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chh--
Q 003796          124 RTSVLQAPH-GDLVGC-MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLK--  197 (795)
Q Consensus       124 Ritfie~~~-~dl~~~-LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~K--  197 (795)
                      .++|+.+|- .++.++ .-.+..||++|||+|++.|        +...+++.+..++..|.| +|.|++.+|.  +++  
T Consensus       527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G--------i~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~  597 (1049)
T PRK14845        527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG--------FKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNIS  597 (1049)
T ss_pred             cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc--------CCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccc
Confidence            389999873 223332 2345779999999999954        888999999999999998 6667777663  222  


Q ss_pred             ----------hh-HHHHHHHHhhc------------c-------cccCCCCeeEEeCCHH--HHHHHHHHHhhccc----
Q 003796          198 ----------KR-KDLKKMCISSL------------T-------SEFPEDCKFYAADTKD--ELHKFLWLFKEQRL----  241 (795)
Q Consensus       198 ----------k~-~~~kK~lk~~f------------~-------~ef~~~~Klf~l~~~~--E~~nL~R~Is~~k~----  241 (795)
                                ++ ..++..+..++            .       .+|....-++++|..+  -+..|+-.|.....    
T Consensus       598 ~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~  677 (1049)
T PRK14845        598 EDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLE  677 (1049)
T ss_pred             cchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhh
Confidence                      11 12333222111            1       2345567788888422  23344444443322    


Q ss_pred             cCcccccCCC-eEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCCCccc
Q 003796          242 TVPHWRNQRP-FLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARK  315 (795)
Q Consensus       242 r~l~WR~~rp-YmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~dP~p~~~~~  315 (795)
                      ..+......| -+.++++...+      ....+++|-|....|++|..|-+-+.+.=...+|..+-+|-|+..-+
T Consensus       678 ~~L~~~~~~~~~g~VlEv~~~k------G~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r  746 (1049)
T PRK14845        678 ERLKLNVEGYAKGTILEVKEEK------GLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIR  746 (1049)
T ss_pred             hhhccCCCCceEEEEEEEEEec------CceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccc
Confidence            2233322221 13333433222      23478899998888999999999887777788999999988876543

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=96.18  E-value=0.093  Score=51.06  Aligned_cols=134  Identities=13%  Similarity=0.124  Sum_probs=74.0

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC---C-----CC--cceEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG---T-----GA--LSSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~---~-----~~--g~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADlVl  149 (795)
                      |+|+|+++.++. +|+++|...+....   .     +.  ...++..+  +.++.++.+|- .++.++ ....+-||.+|
T Consensus         2 i~~vG~~~~GKs-tLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v   78 (167)
T cd04160           2 VLILGLDNAGKT-TFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAII   78 (167)
T ss_pred             EEEEecCCCCHH-HHHHHHhhhcccccCCcccccCCccccceEEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            789999998886 77555444332100   0     00  12233333  46888898872 234443 34578899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                      ||+|++..      ..++.....+..+++   .+|+| ++.|++..|.... ......+.++......-..+.+++.+|.
T Consensus        79 ~vvd~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  151 (167)
T cd04160          79 YVIDSTDR------ERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA  151 (167)
T ss_pred             EEEECchH------HHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence            99999842      223333333333333   46788 6667888774111 1123444444443322223568888884

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01890 LepA LepA subfamily

Probab=96.08  E-value=0.16  Score=50.10  Aligned_cols=106  Identities=8%  Similarity=0.020  Sum_probs=61.9

Q ss_pred             eeeEEEEeCCC-CChHHH-HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          122 RLRTSVLQAPH-GDLVGC-MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       122 k~Ritfie~~~-~dl~~~-LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      +..++|+.+|- .++..+ ...++-||.+|+|+|++.+        ...+.++.+..+...|+| ++.|++.+|......
T Consensus        66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~--------~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~  136 (179)
T cd01890          66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQG--------VEAQTLANFYLALENNLE-IIPVINKIDLPSADP  136 (179)
T ss_pred             cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCC--------ccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCH
Confidence            45678888862 234333 4467889999999999854        333455555566678888 677889988511112


Q ss_pred             HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhc
Q 003796          200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQ  239 (795)
Q Consensus       200 ~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~  239 (795)
                      ....+.+.+.+.  ++ ...+|.+|.  ...+..|...|...
T Consensus       137 ~~~~~~~~~~~~--~~-~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (179)
T cd01890         137 ERVKQQIEDVLG--LD-PSEAILVSAKTGLGVEDLLEAIVER  175 (179)
T ss_pred             HHHHHHHHHHhC--CC-cccEEEeeccCCCCHHHHHHHHHhh
Confidence            223344444332  11 235777773  22344455555443

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.05  E-value=0.16  Score=50.94  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCC------CCCcceEE--EecCceeeEEEEeCCCCC------------h----H
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGALSSTV--SSSKYRLRTSVLQAPHGD------------L----V  136 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~~tv--~~~r~k~Ritfie~~~~d------------l----~  136 (795)
                      -|+|+|.++.+.. +|    ++.+++..      ...| .|.  ........+.|+..| +-            .    .
T Consensus        26 ~v~ivG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~l~l~Dtp-G~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         26 EIAFAGRSNVGKS-SL----INALTNRKNLARTSKTPG-RTQLINFFEVNDKLRLVDLP-GYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             EEEEEcCCCCCHH-HH----HHHHhCCCCcccccCCCC-ceeEEEEEecCCeEEEeCCC-CCCCcCCCchHHHHHHHHHH
Confidence            3899999998886 77    44444322      1112 111  111123578888887 41            1    1


Q ss_pred             HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccC
Q 003796          137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFP  215 (795)
Q Consensus       137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~  215 (795)
                      ..+..+..++++++++|++.+        +.....+++..+...|+| ++.|++..|. +...+......++..+...  
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~--  167 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHP--------LKELDLQMIEWLKEYGIP-VLIVLTKADKLKKGERKKQLKKVRKALKFG--  167 (196)
T ss_pred             HHHHhCccceEEEEEEecCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECcccCCHHHHHHHHHHHHHHHHhc--
Confidence            223333445789999998753        444445677777778888 6667787775 1122233344455555443  


Q ss_pred             CCCeeEEeC
Q 003796          216 EDCKFYAAD  224 (795)
Q Consensus       216 ~~~Klf~l~  224 (795)
                       ..++|..|
T Consensus       168 -~~~~~~~S  175 (196)
T PRK00454        168 -DDEVILFS  175 (196)
T ss_pred             -CCceEEEE
Confidence             35777776

>cd00154 Rab Rab family

Probab=95.92  E-value=0.13  Score=48.65  Aligned_cols=139  Identities=11%  Similarity=0.118  Sum_probs=76.3

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCC-----C-----cceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-----A-----LSSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~-----g~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADlVl  149 (795)
                      |+++|+++++.. +|    +..+......     .     ...++........++++.+|.. ...+ ...+++-+|.+|
T Consensus         3 i~~~G~~~~GKS-tl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii   77 (159)
T cd00154           3 IVLIGDSGVGKT-SL----LLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAI   77 (159)
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEE
Confidence            789999998886 77    4444332211     1     3344444444577888888731 2222 345567799999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeCCH-
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTK-  226 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~~-  226 (795)
                      +++|++..      ..++.- ..+++.+..++  -+.++.|+++.|.. .......+.++.....   .+..++.+|.. 
T Consensus        78 ~v~d~~~~------~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~---~~~~~~~~sa~~  146 (159)
T cd00154          78 LVYDITNR------ESFENL-DKWLKELKEYAPENIPIILVGNKIDLE-DQRQVSTEEAQQFAKE---NGLLFFETSAKT  146 (159)
T ss_pred             EEEECCCH------HHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccc-ccccccHHHHHHHHHH---cCCeEEEEecCC
Confidence            99999842      234433 33666666655  34456778888761 0111122222222222   24567887742 


Q ss_pred             -HHHHHHHHHH
Q 003796          227 -DELHKFLWLF  236 (795)
Q Consensus       227 -~E~~nL~R~I  236 (795)
                       ..+..+...|
T Consensus       147 ~~~i~~~~~~i  157 (159)
T cd00154         147 GENVEELFQSL  157 (159)
T ss_pred             CCCHHHHHHHH
Confidence             2344444433

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04163 Era Era subfamily

Probab=95.86  E-value=0.21  Score=47.58  Aligned_cols=140  Identities=16%  Similarity=0.176  Sum_probs=78.0

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCC---C------cceEEEecCceeeEEEEeCCCCCh-----------HHH
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSSTVSSSKYRLRTSVLQAPHGDL-----------VGC  138 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~------g~~tv~~~r~k~Ritfie~~~~dl-----------~~~  138 (795)
                      ...|+++|++++++. ++    +..+.+....   .      ..........+.++.++..| .-.           ...
T Consensus         3 ~~~i~~~G~~g~GKt-tl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~   76 (168)
T cd04163           3 SGFVAIVGRPNVGKS-TL----LNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTP-GIHKPKKKLGERMVKAA   76 (168)
T ss_pred             eeEEEEECCCCCCHH-HH----HHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECC-CCCcchHHHHHHHHHHH
Confidence            356999999999886 67    4444333211   0      11111111124678899987 311           123


Q ss_pred             HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCC
Q 003796          139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDC  218 (795)
Q Consensus       139 LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~  218 (795)
                      ...+.-+|++++++|++..        +......++..++..+.|- +.|+++.|.. ....... .+..++....+ ..
T Consensus        77 ~~~~~~~d~i~~v~d~~~~--------~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl~-~~~~~~~-~~~~~~~~~~~-~~  144 (168)
T cd04163          77 WSALKDVDLVLFVVDASEP--------IGEGDEFILELLKKSKTPV-ILVLNKIDLV-KDKEDLL-PLLEKLKELGP-FA  144 (168)
T ss_pred             HHHHHhCCEEEEEEECCCc--------cCchHHHHHHHHHHhCCCE-EEEEEchhcc-ccHHHHH-HHHHHHHhccC-CC
Confidence            4457789999999999842        4455567777887778774 5667887751 1111222 22223333333 45


Q ss_pred             eeEEeCC--HHHHHHHHHHH
Q 003796          219 KFYAADT--KDELHKFLWLF  236 (795)
Q Consensus       219 Klf~l~~--~~E~~nL~R~I  236 (795)
                      +++.++.  ...+..|...|
T Consensus       145 ~~~~~s~~~~~~~~~l~~~l  164 (168)
T cd04163         145 EIFPISALKGENVDELLEEI  164 (168)
T ss_pred             ceEEEEeccCCChHHHHHHH
Confidence            6777763  23334444444

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12739 elongation factor G; Reviewed

Probab=95.79  E-value=0.097  Score=63.88  Aligned_cols=121  Identities=13%  Similarity=0.059  Sum_probs=81.3

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhc---cC---CC-----------CC-------cceEEEecCceeeEEEEeCCC--
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLS---SE---GT-----------GA-------LSSTVSSSKYRLRTSVLQAPH--  132 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~---~~---~~-----------~~-------g~~tv~~~r~k~Ritfie~~~--  132 (795)
                      .+-|+|+|..+.++. +|++.|+....   +.   ..           ..       ..+++...  +..+.|+.+|-  
T Consensus         8 irni~iiGh~~~GKs-TL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~   84 (691)
T PRK12739          8 TRNIGIMAHIDAGKT-TTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGHV   84 (691)
T ss_pred             eeEEEEECCCCCCHH-HHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCHH
Confidence            457999999887775 66555554211   00   00           00       23333333  47899999982  


Q ss_pred             CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcc
Q 003796          133 GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLT  211 (795)
Q Consensus       133 ~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~  211 (795)
                      .-+..+..+...||.+|||+||..|        ++..+.+++..+..+|+|.+ .+++.+|........+.+.++..|.
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g--------~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~~~~~~~~i~~~l~  154 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSG--------VEPQSETVWRQADKYGVPRI-VFVNKMDRIGADFFRSVEQIKDRLG  154 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCCHHHHHHHHHHHhC
Confidence            1246788899999999999999965        77888999999999999975 6788888511223345555555553

>PRK00007 elongation factor G; Reviewed

Probab=95.72  E-value=0.1  Score=63.74  Aligned_cols=121  Identities=11%  Similarity=0.042  Sum_probs=80.7

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhc---c---CCC-----------CC-------cceEEEecCceeeEEEEeCCC-C-
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLS---S---EGT-----------GA-------LSSTVSSSKYRLRTSVLQAPH-G-  133 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~---~---~~~-----------~~-------g~~tv~~~r~k~Ritfie~~~-~-  133 (795)
                      +-|+|+|-.+.++. +|++.|+....   .   ...           ..       ..+++...  +++++||.+|- . 
T Consensus        11 rni~iiG~~~~GKs-TL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~~~   87 (693)
T PRK00007         11 RNIGIMAHIDAGKT-TTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGHVD   87 (693)
T ss_pred             eEEEEECCCCCCHH-HHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCcHH
Confidence            46999999987775 66565553221   0   000           00       22233322  57899999982 1 


Q ss_pred             ChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc
Q 003796          134 DLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS  212 (795)
Q Consensus       134 dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~  212 (795)
                      -+..+..+...||.+|||+||..|        +...+.+++..+..+|+|.+ .+++.+|........+...++.+|..
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g--------~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~~~~~~~~i~~~l~~  157 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGG--------VEPQSETVWRQADKYKVPRI-AFVNKMDRTGADFYRVVEQIKDRLGA  157 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCC--------cchhhHHHHHHHHHcCCCEE-EEEECCCCCCCCHHHHHHHHHHHhCC
Confidence            235688899999999999999965        77889999999999999975 67888885112233455556555543

>PRK13351 elongation factor G; Reviewed

Probab=95.61  E-value=0.16  Score=61.90  Aligned_cols=120  Identities=12%  Similarity=0.059  Sum_probs=78.0

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhc---c----------CCCC----C-------cceEEEecCceeeEEEEeCCC-CC
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLS---S----------EGTG----A-------LSSTVSSSKYRLRTSVLQAPH-GD  134 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~---~----------~~~~----~-------g~~tv~~~r~k~Ritfie~~~-~d  134 (795)
                      +-|+|+|..+.++. +|++.|+....   +          .+..    .       ...++...  +.++.|+.+|- .|
T Consensus         9 rni~iiG~~~~GKT-tL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~d   85 (687)
T PRK13351          9 RNIGILAHIDAGKT-TLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGHID   85 (687)
T ss_pred             cEEEEECCCCCcch-hHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCcHH
Confidence            56999999987775 66555553210   0          0000    0       12233322  57899999983 23


Q ss_pred             -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcc
Q 003796          135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLT  211 (795)
Q Consensus       135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~  211 (795)
                       ...+..+.+.||.+|||+|++.|        ....+.++++.+...|+|.+ .|++.+|........+...++.+|.
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~--------~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~  154 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTG--------VQPQTETVWRQADRYGIPRL-IFINKMDRVGADLFKVLEDIEERFG  154 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCCEE-EEEECCCCCCCCHHHHHHHHHHHHC
Confidence             34567889999999999999965        66778899999999999965 4888888521233344555554443

>cd00880 Era_like Era (E

Probab=95.56  E-value=0.34  Score=45.37  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=60.2

Q ss_pred             eeEEEEeCCCC------Ch---HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 003796          123 LRTSVLQAPHG------DL---VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP  193 (795)
Q Consensus       123 ~Ritfie~~~~------dl---~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld  193 (795)
                      .+++|+.+|.-      ..   ..+..++..+|++++++|++.+        .......++..+...+.| ++.|+++.|
T Consensus        45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~--------~~~~~~~~~~~~~~~~~~-~ivv~nK~D  115 (163)
T cd00880          45 GPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLR--------ADEEEEKLLELLRERGKP-VLLVLNKID  115 (163)
T ss_pred             CcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCe-EEEEEEccc
Confidence            47889988731      11   4666788999999999999953        333333356666667777 567889988


Q ss_pred             cchhhhHHHHHHH-HhhcccccCCCCeeEEeCCHH--HHHHHHHHH
Q 003796          194 TDLKKRKDLKKMC-ISSLTSEFPEDCKFYAADTKD--ELHKFLWLF  236 (795)
Q Consensus       194 ~~~Kk~~~~kK~l-k~~f~~ef~~~~Klf~l~~~~--E~~nL~R~I  236 (795)
                      .  .......... ..........+..+|.++..+  .+..|...|
T Consensus       116 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l  159 (163)
T cd00880         116 L--LPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL  159 (163)
T ss_pred             c--CChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence            5  1111111111 112222334478888887432  244444443

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=95.44  E-value=0.41  Score=55.97  Aligned_cols=179  Identities=17%  Similarity=0.172  Sum_probs=120.9

Q ss_pred             ceeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCc-cccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCc-
Q 003796          121 YRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSF-SEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPT-  194 (795)
Q Consensus       121 ~k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g-~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~-  194 (795)
                      .+..+|++..|- .| +-.||--|--||..+|++||+.| ||    .+||  ..|.|.+.+|++-|+..+|.+++.+|. 
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE----~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V  328 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFE----SGFDPGGQTREHALLLRSLGISQLIVAINKMDLV  328 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhh----hccCCCCchHHHHHHHHHcCcceEEEEeeccccc
Confidence            357999999984 45 55799999999999999999987 22    2455  378999999999999999999999995 


Q ss_pred             chhh-hH-HHHHHHHhhccc---ccCCCCeeEEeCC-----------HHH------HHHHHHHHhhccccCcccccCCCe
Q 003796          195 DLKK-RK-DLKKMCISSLTS---EFPEDCKFYAADT-----------KDE------LHKFLWLFKEQRLTVPHWRNQRPF  252 (795)
Q Consensus       195 ~~Kk-~~-~~kK~lk~~f~~---ef~~~~Klf~l~~-----------~~E------~~nL~R~Is~~k~r~l~WR~~rpY  252 (795)
                      +|-+ |- .++..|..++..   ++-..-++.++|+           .++      .-+|+-.|=..++-.=.  -..|.
T Consensus       329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~--~~kPl  406 (603)
T KOG0458|consen  329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERP--IDKPL  406 (603)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCc--ccCCe
Confidence            5554 33 478888888732   2223347777773           112      12455555543321111  22255


Q ss_pred             EEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEe-CCCCceeeceeeccCCCCC
Q 003796          253 LMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHI-SGAGDFQLGKIEILKDPFP  310 (795)
Q Consensus       253 mLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDfqi~~I~~~~dP~p  310 (795)
                      .|.=.-.+ +.   ... .++|+|=|--..+-.|+.|.| |+.=|++|..|+.=..||-
T Consensus       407 ~ltIsdi~-~~---~~~-~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~  460 (603)
T KOG0458|consen  407 RLTISDIY-PL---PSS-GVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKT  460 (603)
T ss_pred             EEEhhhee-ec---CCC-eeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcce
Confidence            54322111 11   112 389999998888888988887 7778999999987655543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=95.40  E-value=0.31  Score=53.40  Aligned_cols=134  Identities=10%  Similarity=0.103  Sum_probs=109.7

Q ss_pred             CceeeEEEEeCCCCC--hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch
Q 003796          120 KYRLRTSVLQAPHGD--LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL  196 (795)
Q Consensus       120 r~k~Ritfie~~~~d--l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~  196 (795)
                      ++-||++|+.||--+  +..||.-|-+.|=.||||.|+.-+       =...|.|=|-+|.--|+-+++.|=+.+|. .-
T Consensus        83 ~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-------PQPQT~EHl~AleIigik~iiIvQNKIDlV~~  155 (415)
T COG5257          83 ELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTREHLMALEIIGIKNIIIVQNKIDLVSR  155 (415)
T ss_pred             cEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-------CCCchHHHHHHHhhhccceEEEEecccceecH
Confidence            567999999998433  667999999999999999999643       34579999999999999999999888885 21


Q ss_pred             hhhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796          197 KKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDV  260 (795)
Q Consensus       197 Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~  260 (795)
                      .+....-+.+|.|++--...++.+.++|.  ...|--|+-+|...-|.|.+==+..|-|++-|-=+
T Consensus       156 E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFD  221 (415)
T COG5257         156 ERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFD  221 (415)
T ss_pred             HHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecc
Confidence            23345677788899988999999999995  55677899999988888888888999998888433

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=95.39  E-value=0.19  Score=52.67  Aligned_cols=64  Identities=11%  Similarity=0.069  Sum_probs=51.6

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +..+.|+.+|- .+ ...+..+.+.||.+|||+|+..|        ....+.++++.+...|+| ++.|++.+|.
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g--------~~~~t~~~l~~~~~~~~p-~ilviNKiD~  137 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG--------VCVQTETVLRQALKERVK-PVLVINKIDR  137 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence            56788998872 23 44678889999999999999965        667789999999889997 6677787774

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG1159 Era GTPase [General function prediction only]

Probab=95.25  E-value=0.29  Score=53.16  Aligned_cols=140  Identities=16%  Similarity=0.186  Sum_probs=80.0

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC--------C--cceEEEecCceeeEEEEeCCC-----CChH-----HHHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG--------A--LSSTVSSSKYRLRTSVLQAPH-----GDLV-----GCME  140 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--------~--g~~tv~~~r~k~Ritfie~~~-----~dl~-----~~LD  140 (795)
                      .|||||.|..+.+ .|    +.++.++...        .  ....++... ...+.|+..|-     +.++     ....
T Consensus         8 fVaIiGrPNvGKS-TL----lN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           8 FVAIIGRPNVGKS-TL----LNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             EEEEEcCCCCcHH-HH----HHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            5999999997775 66    4444443321        1  222333332 56778887652     2232     3445


Q ss_pred             HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCe
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCK  219 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~K  219 (795)
                      +.+=||+||||+|+..+        +...-+.+|+.|+....| ++.+++.+|. ..+..  . ..+......-++ -..
T Consensus        82 sl~dvDlilfvvd~~~~--------~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~--l-~~~~~~~~~~~~-f~~  148 (298)
T COG1159          82 ALKDVDLILFVVDADEG--------WGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTV--L-LKLIAFLKKLLP-FKE  148 (298)
T ss_pred             HhccCcEEEEEEecccc--------CCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHH--H-HHHHHHHHhhCC-cce
Confidence            67789999999999953        767778889999883344 5556777774 11221  1 223333333333 346


Q ss_pred             eEEeCC--HHHHHHHHHHHhhc
Q 003796          220 FYAADT--KDELHKFLWLFKEQ  239 (795)
Q Consensus       220 lf~l~~--~~E~~nL~R~Is~~  239 (795)
                      +|.+|.  -..+..|+..|...
T Consensus       149 ivpiSA~~g~n~~~L~~~i~~~  170 (298)
T COG1159         149 IVPISALKGDNVDTLLEIIKEY  170 (298)
T ss_pred             EEEeeccccCCHHHHHHHHHHh
Confidence            777662  33344444444433

>PRK03003 GTP-binding protein Der; Reviewed

Probab=95.04  E-value=0.62  Score=54.30  Aligned_cols=128  Identities=16%  Similarity=0.146  Sum_probs=75.0

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----c--eEEEecCceeeEEEEeCCCC-----------Ch
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----S--STVSSSKYRLRTSVLQAPHG-----------DL  135 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~--~tv~~~r~k~Ritfie~~~~-----------dl  135 (795)
                      -+.-|+|+|.++.+.. +|    +..|+....   ..  |    +  .++...  .+.+.|+..+ .           ..
T Consensus       210 ~~~kI~iiG~~nvGKS-SL----in~l~~~~~~~~s~~~gtT~d~~~~~~~~~--~~~~~l~DTa-G~~~~~~~~~~~e~  281 (472)
T PRK03003        210 GPRRVALVGKPNVGKS-SL----LNKLAGEERSVVDDVAGTTVDPVDSLIELG--GKTWRFVDTA-GLRRRVKQASGHEY  281 (472)
T ss_pred             cceEEEEECCCCCCHH-HH----HHHHhCCCcccccCCCCccCCcceEEEEEC--CEEEEEEECC-CccccccccchHHH
Confidence            3567899999998876 77    444433221   11  1    1  122222  2467777776 3           22


Q ss_pred             HHH---HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcc
Q 003796          136 VGC---MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLT  211 (795)
Q Consensus       136 ~~~---LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~  211 (795)
                      .+.   +.+.+-||++|+|+|++.+        +.....+++..+...|.| ++.|++..|. +...+....+.+...+.
T Consensus       282 ~~~~~~~~~i~~ad~vilV~Da~~~--------~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~~~~~~~~~i~~~l~  352 (472)
T PRK03003        282 YASLRTHAAIEAAEVAVVLIDASEP--------ISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDEDRRYYLEREIDRELA  352 (472)
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCChhHHHHHHHHHHHhcc
Confidence            222   3456889999999999965        444455678888888987 5667787775 11112233444444443


Q ss_pred             cccCCCCeeEEeC
Q 003796          212 SEFPEDCKFYAAD  224 (795)
Q Consensus       212 ~ef~~~~Klf~l~  224 (795)
                      ..  ..+.++.+|
T Consensus       353 ~~--~~~~~~~~S  363 (472)
T PRK03003        353 QV--PWAPRVNIS  363 (472)
T ss_pred             cC--CCCCEEEEE
Confidence            22  136778877

>cd04167 Snu114p Snu114p subfamily

Probab=94.99  E-value=0.34  Score=50.00  Aligned_cols=65  Identities=14%  Similarity=0.171  Sum_probs=48.5

Q ss_pred             ceeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          121 YRLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       121 ~k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+.+++|+.+|- .++ ..++.....||.+|+|+|++.+        ...++.++++.+..+|+| ++.|++.+|.
T Consensus        69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~--------~~~~~~~~~~~~~~~~~p-~iiviNK~D~  135 (213)
T cd04167          69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG--------VTSNTERLIRHAILEGLP-IVLVINKIDR  135 (213)
T ss_pred             CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence            357899999873 233 4677788999999999999864        444567788888888876 5567777774

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=94.97  E-value=0.3  Score=57.74  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=58.0

Q ss_pred             eeeEEEEeCCC-CChHH-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       122 k~Ritfie~~~-~dl~~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      ..++.++.+|- .|+.. +.-+...||.+|+|+|++.|        .+..+..+++.++..|+| ++.+++.+|......
T Consensus        78 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~  148 (526)
T PRK00741         78 DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG--------VEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREP  148 (526)
T ss_pred             CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCcccccCH
Confidence            46799999972 23433 66677899999999999965        777899999999999999 677889888521222


Q ss_pred             HHHHHHHHhhc
Q 003796          200 KDLKKMCISSL  210 (795)
Q Consensus       200 ~~~kK~lk~~f  210 (795)
                      ..+...++..|
T Consensus       149 ~~~l~~i~~~l  159 (526)
T PRK00741        149 LELLDEIEEVL  159 (526)
T ss_pred             HHHHHHHHHHh
Confidence            23444454444

>PRK03003 GTP-binding protein Der; Reviewed

Probab=94.97  E-value=0.21  Score=58.27  Aligned_cols=114  Identities=15%  Similarity=0.136  Sum_probs=65.7

Q ss_pred             cCCCCCCCCEEEEEecCCCccChhhHHHHHHHhhcc-CCCCCcce----EEEecCceeeEEEEeCCCCC-----h----H
Q 003796           71 ASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSS-EGTGALSS----TVSSSKYRLRTSVLQAPHGD-----L----V  136 (795)
Q Consensus        71 ~~~~~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~~~~g~~----tv~~~r~k~Ritfie~~~~d-----l----~  136 (795)
                      .+|+..+.+..|+|||.++.+.. +|++.|+..-.. .....|..    .....-....+.++.++--+     +    .
T Consensus        30 ~~~~~~~~~~~V~IvG~~nvGKS-SL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~  108 (472)
T PRK03003         30 LEAAEGGPLPVVAVVGRPNVGKS-TLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVA  108 (472)
T ss_pred             hhcccCCCCCEEEEEcCCCCCHH-HHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHH
Confidence            34444444556999999998886 773333321100 01111221    11111012468888887211     1    1


Q ss_pred             -HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          137 -GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       137 -~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                       .+.-+.+-||+||||+|++.+        ....-.++++.|+..|.| ++.|++.+|.
T Consensus       109 ~~~~~~~~~aD~il~VvD~~~~--------~s~~~~~i~~~l~~~~~p-iilV~NK~Dl  158 (472)
T PRK03003        109 EQAEVAMRTADAVLFVVDATVG--------ATATDEAVARVLRRSGKP-VILAANKVDD  158 (472)
T ss_pred             HHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence             123357889999999999965        223346778888888877 6667888885

>cd01878 HflX HflX subfamily

Probab=94.91  E-value=0.77  Score=46.62  Aligned_cols=101  Identities=15%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCC--C------cce--EEEecCceeeEEEEeCCCCC-----------hHHH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSS--TVSSSKYRLRTSVLQAPHGD-----------LVGC  138 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~--tv~~~r~k~Ritfie~~~~d-----------l~~~  138 (795)
                      ..|+|+|+++++.. +|    ++.+++....  .      .+.  .+..+. ...++|+..| .-           +.++
T Consensus        42 ~~I~iiG~~g~GKS-tL----l~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~-G~~~~~~~~~~~~~~~~  114 (204)
T cd01878          42 PTVALVGYTNAGKS-TL----FNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTV-GFIRDLPHQLVEAFRST  114 (204)
T ss_pred             CeEEEECCCCCCHH-HH----HHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCC-ccccCCCHHHHHHHHHH
Confidence            46899999998886 77    5545433211  0      121  122222 2378888776 43           2334


Q ss_pred             HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       139 LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      +..+.-||.+++++|++.+      ..++ ....++..++..+.  ..++.|++..|.
T Consensus       115 ~~~~~~~d~ii~v~D~~~~------~~~~-~~~~~~~~l~~~~~~~~~viiV~NK~Dl  165 (204)
T cd01878         115 LEEVAEADLLLHVVDASDP------DYEE-QIETVEKVLKELGAEDIPMILVLNKIDL  165 (204)
T ss_pred             HHHHhcCCeEEEEEECCCC------Chhh-HHHHHHHHHHHcCcCCCCEEEEEEcccc
Confidence            4556679999999999853      1121 12233444444443  347778888885

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=94.89  E-value=0.56  Score=45.57  Aligned_cols=138  Identities=14%  Similarity=0.138  Sum_probs=72.1

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC---cceE--EEecC---ceeeEEEEeCCCCC------------hHHHHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSST--VSSSK---YRLRTSVLQAPHGD------------LVGCME  140 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~~t--v~~~r---~k~Ritfie~~~~d------------l~~~LD  140 (795)
                      .|+|+|.++.+.. +|    ++.++......   ...|  +..+.   ...+++|+..| .-            ..++..
T Consensus         2 ~i~~~G~~~~GKs-sl----i~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~-G~~~~~~~~~~~~~~~~~~~   75 (168)
T cd01897           2 TLVIAGYPNVGKS-SL----VNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTP-GLLDRPLEERNTIEMQAITA   75 (168)
T ss_pred             eEEEEcCCCCCHH-HH----HHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECC-CcCCccccCCchHHHHHHHH
Confidence            3789999998875 77    55554433221   1111  11111   13688999887 42            122333


Q ss_pred             HHhhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhc--CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCC
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSL--GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPED  217 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aq--G~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~  217 (795)
                      .+-.+|.+|+|+|++..      ..+. ....+++..++..  +.| ++.|++..|.  ........ ++.+. . .. .
T Consensus        76 ~~~~~d~~l~v~d~~~~------~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl--~~~~~~~~-~~~~~-~-~~-~  142 (168)
T cd01897          76 LAHLRAAVLFLFDPSET------CGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDL--LTFEDLSE-IEEEE-E-LE-G  142 (168)
T ss_pred             HHhccCcEEEEEeCCcc------cccchHHHHHHHHHHHhhcCcCC-eEEEEEcccc--CchhhHHH-HHHhh-h-hc-c
Confidence            33457999999999842      1221 2223566666554  554 6677888885  21111111 22221 1 12 4


Q ss_pred             CeeEEeCC--HHHHHHHHHHHh
Q 003796          218 CKFYAADT--KDELHKFLWLFK  237 (795)
Q Consensus       218 ~Klf~l~~--~~E~~nL~R~Is  237 (795)
                      .++|..|.  ...+..|...|+
T Consensus       143 ~~~~~~Sa~~~~gi~~l~~~l~  164 (168)
T cd01897         143 EEVLKISTLTEEGVDEVKNKAC  164 (168)
T ss_pred             CceEEEEecccCCHHHHHHHHH
Confidence            56777773  333445554444

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00503 prfC peptide chain release factor 3

Probab=94.88  E-value=0.31  Score=57.58  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             eeeEEEEeCCC-CChHH-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       122 k~Ritfie~~~-~dl~~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      ..++.|+.+|- .|+.. +..+...||.+|+|+|++.|        ++..+..++..++..|+| ++.+++.+|......
T Consensus        79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~  149 (527)
T TIGR00503        79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--------VETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDP  149 (527)
T ss_pred             CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECccccCCCH
Confidence            46888898872 24433 67778899999999999964        778889999999999998 666888888521223


Q ss_pred             HHHHHHHHhhccc
Q 003796          200 KDLKKMCISSLTS  212 (795)
Q Consensus       200 ~~~kK~lk~~f~~  212 (795)
                      .++...++.++..
T Consensus       150 ~~ll~~i~~~l~~  162 (527)
T TIGR00503       150 LELLDEVENELKI  162 (527)
T ss_pred             HHHHHHHHHHhCC
Confidence            3455666655543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=94.65  E-value=0.81  Score=43.66  Aligned_cols=131  Identities=15%  Similarity=0.086  Sum_probs=69.2

Q ss_pred             EEEecCCCccChhhHHHHHH--HhhccCCCCCcceEEEe--cCceeeEEEEeCCC-CC----------hHHH----HHHH
Q 003796           82 IVLFGLSASVNLNSVREDLL--RQLSSEGTGALSSTVSS--SKYRLRTSVLQAPH-GD----------LVGC----MEMA  142 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lv--k~~~~~~~~~g~~tv~~--~r~k~Ritfie~~~-~d----------l~~~----LD~a  142 (795)
                      |+++|.++.+.. +|++.|.  ..........+. |...  -.....++|+.+|. .+          ...+    +-..
T Consensus         2 i~l~G~~g~GKT-tL~~~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01876           2 IAFAGRSNVGKS-SLINALTNRKKLARTSKTPGK-TQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR   79 (170)
T ss_pred             EEEEcCCCCCHH-HHHHHHhcCCceeeecCCCCc-ceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence            789999998875 7733333  111111111111 1110  01123677787762 11          1222    2233


Q ss_pred             hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeE
Q 003796          143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFY  221 (795)
Q Consensus       143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf  221 (795)
                      ..++++++++|....        +.....++++.|...++| ++.|+++.|. ....+......+...+.. +.....+|
T Consensus        80 ~~~~~~~~v~d~~~~--------~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~~  149 (170)
T cd01876          80 ENLKGVVLLIDSRHG--------PTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPII  149 (170)
T ss_pred             hhhhEEEEEEEcCcC--------CCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCceE
Confidence            346789999998742        345566788888888877 6667788774 112222333333333332 23356777


Q ss_pred             EeC
Q 003796          222 AAD  224 (795)
Q Consensus       222 ~l~  224 (795)
                      ..|
T Consensus       150 ~~S  152 (170)
T cd01876         150 LFS  152 (170)
T ss_pred             EEe
Confidence            776

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd00876 Ras Ras family

Probab=94.63  E-value=0.59  Score=44.62  Aligned_cols=106  Identities=8%  Similarity=0.033  Sum_probs=60.2

Q ss_pred             EEEecCCCccChhhHHHHHHHhh--ccCCCCC---cceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEEeeeC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQL--SSEGTGA---LSSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAFVASA  154 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~--~~~~~~~---g~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll~ida  154 (795)
                      |+|+|+++++.. +|++.++..-  .+...+.   -...+..+...-++.++.+|.. ...++ ....+-+|.+++++|.
T Consensus         2 i~i~G~~~~GKT-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           2 VVVLGAGGVGKS-AITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             EEEECCCCCCHH-HHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            789999998886 6733333211  0011111   1222333333467888999842 22332 3445679999999998


Q ss_pred             CCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796          155 SSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT  194 (795)
Q Consensus       155 s~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~  194 (795)
                      +..      ..++....-...+++..+  -+.++.|+++.|.
T Consensus        81 ~~~------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  116 (160)
T cd00876          81 TDR------ESFEEIKGYREQILRVKDDEDIPIVLVGNKCDL  116 (160)
T ss_pred             CCH------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcc
Confidence            742      234444444444444444  4566778888886

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=94.61  E-value=0.68  Score=56.83  Aligned_cols=127  Identities=16%  Similarity=0.154  Sum_probs=75.7

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC---CC------cceE--EEecCceeeEEEEeCCCC-----------ChH
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA------LSST--VSSSKYRLRTSVLQAPHG-----------DLV  136 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~------g~~t--v~~~r~k~Ritfie~~~~-----------dl~  136 (795)
                      +.-|+|+|.++.+.. +|    +..++....   ..      .++.  +...  ...++|+.++ .           ...
T Consensus       450 ~~kI~ivG~~nvGKS-SL----in~l~~~~~~~v~~~~gtT~d~~~~~~~~~--~~~~~liDTa-G~~~~~~~~~~~e~~  521 (712)
T PRK09518        450 LRRVALVGRPNVGKS-SL----LNQLTHEERAVVNDLAGTTRDPVDEIVEID--GEDWLFIDTA-GIKRRQHKLTGAEYY  521 (712)
T ss_pred             CcEEEEECCCCCCHH-HH----HHHHhCccccccCCCCCCCcCcceeEEEEC--CCEEEEEECC-CcccCcccchhHHHH
Confidence            346899999998886 77    444433221   11      2221  2222  3467888887 3           222


Q ss_pred             HH---HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhccc
Q 003796          137 GC---MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTS  212 (795)
Q Consensus       137 ~~---LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~  212 (795)
                      +.   +.+.+-||++|+|+|++.+        +......+++.+...|.| ++.|++..|. +.......++.+...|..
T Consensus       522 ~~~r~~~~i~~advvilViDat~~--------~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~~~~~~~~~~~~~~l~~  592 (712)
T PRK09518        522 SSLRTQAAIERSELALFLFDASQP--------ISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDEFRRQRLERLWKTEFDR  592 (712)
T ss_pred             HHHHHHHHhhcCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEEchhcCChhHHHHHHHHHHHhccC
Confidence            22   3456789999999999965        555566777777778877 5567787774 111122344445444432


Q ss_pred             ccCCCCeeEEeC
Q 003796          213 EFPEDCKFYAAD  224 (795)
Q Consensus       213 ef~~~~Klf~l~  224 (795)
                       + ..+.++++|
T Consensus       593 -~-~~~~ii~iS  602 (712)
T PRK09518        593 -V-TWARRVNLS  602 (712)
T ss_pred             -C-CCCCEEEEE
Confidence             2 256778887

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=94.52  E-value=0.23  Score=56.72  Aligned_cols=96  Identities=10%  Similarity=0.140  Sum_probs=65.5

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCCCC----------h-HHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPHGD----------L-VGCM  139 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~------~tv~~~r~k~Ritfie~~~~d----------l-~~~L  139 (795)
                      |+|||.++.+.. +|    +..|++...   ..  |.      ..+...  .++++++.+| .-          + ..++
T Consensus         2 i~ivG~~nvGKS-tL----~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~--~~~~~liDTp-G~~~~~~~~~~~~~~~~~   73 (429)
T TIGR03594         2 VAIVGRPNVGKS-TL----FNRLTGKRDAIVSDTPGVTRDRKYGDAEWG--GREFILIDTG-GIEEDDDGLDKQIREQAE   73 (429)
T ss_pred             EEEECCCCCCHH-HH----HHHHhCCCcceecCCCCcccCceEEEEEEC--CeEEEEEECC-CCCCcchhHHHHHHHHHH
Confidence            899999998886 67    444433221   11  21      122222  3579999987 41          1 2245


Q ss_pred             HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+.+-||+||||+|+..|        +.....++.+.|+..|.| ++.|++..|.
T Consensus        74 ~~~~~ad~vl~vvD~~~~--------~~~~d~~i~~~l~~~~~p-iilVvNK~D~  119 (429)
T TIGR03594        74 IAIEEADVILFVVDGREG--------LTPEDEEIAKWLRKSGKP-VILVANKIDG  119 (429)
T ss_pred             HHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHhCCC-EEEEEECccC
Confidence            677889999999999965        666678889999989988 6667888775

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12740 elongation factor G; Reviewed

Probab=94.43  E-value=1.2  Score=54.31  Aligned_cols=80  Identities=11%  Similarity=0.122  Sum_probs=60.2

Q ss_pred             eeeEEEEeCCCCCh---HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh
Q 003796          122 RLRTSVLQAPHGDL---VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK  198 (795)
Q Consensus       122 k~Ritfie~~~~dl---~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk  198 (795)
                      ..+++|+.+| ...   ..+..+...||.+|+++|++.|        ....+..+++.+...|+|.++ |++.+|.....
T Consensus        59 ~~~i~liDtP-G~~~~~~~~~~~l~~aD~vllvvd~~~~--------~~~~~~~~~~~~~~~~~p~ii-v~NK~D~~~~~  128 (668)
T PRK12740         59 GHKINLIDTP-GHVDFTGEVERALRVLDGAVVVVCAVGG--------VEPQTETVWRQAEKYGVPRII-FVNKMDRAGAD  128 (668)
T ss_pred             CEEEEEEECC-CcHHHHHHHHHHHHHhCeEEEEEeCCCC--------cCHHHHHHHHHHHHcCCCEEE-EEECCCCCCCC
Confidence            4789999998 442   4577889999999999999964        566778889999999999665 88988852123


Q ss_pred             hHHHHHHHHhhcc
Q 003796          199 RKDLKKMCISSLT  211 (795)
Q Consensus       199 ~~~~kK~lk~~f~  211 (795)
                      ...+.+.++.+|.
T Consensus       129 ~~~~~~~l~~~l~  141 (668)
T PRK12740        129 FFRVLAQLQEKLG  141 (668)
T ss_pred             HHHHHHHHHHHHC
Confidence            3456666666554

>TIGR00484 EF-G translation elongation factor EF-G

Probab=94.41  E-value=0.44  Score=58.20  Aligned_cols=121  Identities=14%  Similarity=0.060  Sum_probs=77.2

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhcc------CCC-----C------CcceEEEe-----cCceeeEEEEeCCC-CC-h
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSS------EGT-----G------ALSSTVSS-----SKYRLRTSVLQAPH-GD-L  135 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~------~~~-----~------~g~~tv~~-----~r~k~Ritfie~~~-~d-l  135 (795)
                      +-|+|+|..+.++. +|++.|+..-..      ...     +      ..-+|+.+     .-.+..++|+.+|- .+ .
T Consensus        11 rni~iiG~~~~GKs-TL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~   89 (689)
T TIGR00484        11 RNIGISAHIDAGKT-TTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT   89 (689)
T ss_pred             cEEEEECCCCCCHH-HHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence            57999999987775 565555532110      000     0      01222221     11247899999872 22 3


Q ss_pred             HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhc
Q 003796          136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSL  210 (795)
Q Consensus       136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f  210 (795)
                      ..+..+...||.+|||+|+..|        ....+.++++.++.+|+|.++ |++.+|.......++...++..+
T Consensus        90 ~~~~~~l~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i~~~l  155 (689)
T TIGR00484        90 VEVERSLRVLDGAVAVLDAVGG--------VQPQSETVWRQANRYEVPRIA-FVNKMDKTGANFLRVVNQIKQRL  155 (689)
T ss_pred             HHHHHHHHHhCEEEEEEeCCCC--------CChhHHHHHHHHHHcCCCEEE-EEECCCCCCCCHHHHHHHHHHHh
Confidence            4577788999999999999965        667788999999999999764 78888851122334455555544

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=94.36  E-value=0.34  Score=56.33  Aligned_cols=133  Identities=17%  Similarity=0.217  Sum_probs=88.3

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCC-CChHHHH-HHHhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKV  144 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKv  144 (795)
                      +-|-||+|+|-=.-+.. +|    +..+.+....+          |-++|..+ .=+++||+.-|- .-+.+|= --|+|
T Consensus       151 ~RpPVVTiMGHVDHGKT-TL----LD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~v  224 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKT-TL----LDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANV  224 (683)
T ss_pred             CCCCeEEEeecccCChh-hH----HHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCcc
Confidence            45667999997554443 45    55555544322          66677766 348999998873 2344543 35899


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHh-hccc-ccCCCCeeEE
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCIS-SLTS-EFPEDCKFYA  222 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~-~f~~-ef~~~~Klf~  222 (795)
                      +|+|+||+.|..|        +=..|-|-+.-.+..++|=|++ |+.+|.....--++++.|-. =+-- .++.+.-+..
T Consensus       225 tDIvVLVVAadDG--------VmpQT~EaIkhAk~A~VpiVvA-inKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvip  295 (683)
T KOG1145|consen  225 TDIVVLVVAADDG--------VMPQTLEAIKHAKSANVPIVVA-INKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIP  295 (683)
T ss_pred             ccEEEEEEEccCC--------ccHhHHHHHHHHHhcCCCEEEE-EeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEE
Confidence            9999999999965        6778999999999999997665 67777422334455554433 2222 3455667777


Q ss_pred             eC
Q 003796          223 AD  224 (795)
Q Consensus       223 l~  224 (795)
                      +|
T Consensus       296 iS  297 (683)
T KOG1145|consen  296 IS  297 (683)
T ss_pred             ee
Confidence            76

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=94.30  E-value=0.94  Score=45.40  Aligned_cols=104  Identities=16%  Similarity=0.148  Sum_probs=61.1

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCC-----CCCc----ceEEEe-cCceeeEEEEeCCC-CChHHHHHH-Hhhhc
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGAL----SSTVSS-SKYRLRTSVLQAPH-GDLVGCMEM-AKVAD  146 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~g----~~tv~~-~r~k~Ritfie~~~-~dl~~~LD~-aKvAD  146 (795)
                      ++-|+++|+++++.. +|    +..+....     .+.|    .+++.. +.....+.++..+- ..+..+... .+.||
T Consensus         3 ~~kv~~vG~~~~GKT-sl----i~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   77 (183)
T cd04152           3 SLHIVMLGLDSAGKT-TV----LYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTD   77 (183)
T ss_pred             ceEEEEECCCCCCHH-HH----HHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCC
Confidence            456899999998886 67    44442211     1112    222322 11235678887762 225555544 67899


Q ss_pred             eEEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+|+|+|++..      ..|+   .+-.++++.+...+.| ++.|++..|.
T Consensus        78 ~ii~v~D~~~~------~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~  121 (183)
T cd04152          78 GIVFVVDSVDV------ERMEEAKTELHKITRFSENQGVP-VLVLANKQDL  121 (183)
T ss_pred             EEEEEEECCCH------HHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCc
Confidence            99999999853      1232   2444566655556776 5666787775

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=94.30  E-value=0.28  Score=46.56  Aligned_cols=90  Identities=19%  Similarity=0.180  Sum_probs=54.1

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC-cceEEEecCceeeEEEEeCCCCC-------hHHHHHHHhhhceEEEeee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-LSSTVSSSKYRLRTSVLQAPHGD-------LVGCMEMAKVADLVAFVAS  153 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-g~~tv~~~r~k~Ritfie~~~~d-------l~~~LD~aKvADlVll~id  153 (795)
                      |+|+|.++.+.. +|    +..|+...... ..+++..   ..  .++..| +.       ..+++...+-||.+|+|+|
T Consensus         3 v~liG~~~vGKS-sL----~~~l~~~~~~~~~t~~~~~---~~--~~iDt~-G~~~~~~~~~~~~~~~~~~ad~vilv~d   71 (142)
T TIGR02528         3 IMFIGSVGCGKT-TL----TQALQGEEILYKKTQAVEY---ND--GAIDTP-GEYVENRRLYSALIVTAADADVIALVQS   71 (142)
T ss_pred             EEEECCCCCCHH-HH----HHHHcCCccccccceeEEE---cC--eeecCc-hhhhhhHHHHHHHHHHhhcCCEEEEEec
Confidence            789999998886 77    55554433222 2233332   22  456666 43       4455667889999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++.+      ..|..  .+++..+   +- .++.|++..|.
T Consensus        72 ~~~~------~s~~~--~~~~~~~---~~-p~ilv~NK~Dl  100 (142)
T TIGR02528        72 ATDP------ESRFP--PGFASIF---VK-PVIGLVTKIDL  100 (142)
T ss_pred             CCCC------CcCCC--hhHHHhc---cC-CeEEEEEeecc
Confidence            9854      22322  2333332   33 45667788885

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01894 EngA1 EngA1 subfamily

Probab=94.20  E-value=0.62  Score=44.29  Aligned_cols=98  Identities=9%  Similarity=0.070  Sum_probs=59.7

Q ss_pred             EEecCCCccChhhHHHHHHHhhccCCC---CC-cceEE-----EecCceeeEEEEeCCC-CChH---------HHHHHHh
Q 003796           83 VLFGLSASVNLNSVREDLLRQLSSEGT---GA-LSSTV-----SSSKYRLRTSVLQAPH-GDLV---------GCMEMAK  143 (795)
Q Consensus        83 ~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~-g~~tv-----~~~r~k~Ritfie~~~-~dl~---------~~LD~aK  143 (795)
                      +++|.++.+.. +|    +..+.....   .. .++|.     ........+.|+.+|. .+..         ..+....
T Consensus         1 ~l~G~~~~GKs-sl----~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKS-TL----FNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHH-HH----HHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence            47888887775 67    333332221   11 11221     1111135788998873 2211         2345677


Q ss_pred             hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      -||++++++|+..+        +.....+++..++.++.| ++.|++..|.
T Consensus        76 ~~d~ii~v~d~~~~--------~~~~~~~~~~~~~~~~~p-iiiv~nK~D~  117 (157)
T cd01894          76 EADVILFVVDGREG--------LTPADEEIAKYLRKSKKP-VILVVNKVDN  117 (157)
T ss_pred             hCCEEEEEEecccc--------CCccHHHHHHHHHhcCCC-EEEEEECccc
Confidence            89999999999854        444556788888888855 6678888885

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=94.18  E-value=0.32  Score=47.98  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccC-CCCCcceEEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceEEEeeeCCCc
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSE-GTGALSSTVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVAFVASASSF  157 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~-~~~~g~~tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlVll~idas~g  157 (795)
                      |+++|+++++.. +|++.+...+... ..+.|..+....-.+.+++++.++ ..  +..+ ...++-||.+|+|+|++..
T Consensus         2 i~~~G~~~~GKT-sl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~-G~~~~~~~~~~~~~~a~~ii~V~D~s~~   79 (167)
T cd04161           2 LLTVGLDNAGKT-TLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLG-GGANFRGIWVNYYAEAHGLVFVVDSSDD   79 (167)
T ss_pred             EEEECCCCCCHH-HHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECC-CcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence            789999998886 6733333222111 111144332222225688999998 43  3444 4557889999999999842


Q ss_pred             cccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          158 SEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       158 ~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                            ..|+.-...+-.+++.   .+.| ++.|++..|.
T Consensus        80 ------~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl  112 (167)
T cd04161          80 ------DRVQEVKEILRELLQHPRVSGKP-ILVLANKQDK  112 (167)
T ss_pred             ------hHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCC
Confidence                  2244332233333332   3555 6667888885

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04157 Arl6 Arl6 subfamily

Probab=94.08  E-value=1  Score=43.32  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=56.7

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC--CC-----CcceEEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceEEEe
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG--TG-----ALSSTVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVAFV  151 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~--~~-----~g~~tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlVll~  151 (795)
                      |+|+|+++.++. +|    +..|+...  ..     .|.........+.+++++..| ..  ...+ -...+-||.+|+|
T Consensus         2 i~~vG~~~~GKT-sl----~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~d~ii~v   75 (162)
T cd04157           2 ILVVGLDNSGKT-TI----INQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMS-GQGKYRGLWEHYYKNIQGIIFV   75 (162)
T ss_pred             EEEECCCCCCHH-HH----HHHHcccCCCcceecCccccceEEEEECCEEEEEEECC-CCHhhHHHHHHHHccCCEEEEE
Confidence            789999998876 67    55554332  11     132111111124678889887 43  3333 3346889999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHH-----hcCCCceEEEeccCCc
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFR-----SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~-----aqG~P~vigVl~~Ld~  194 (795)
                      +|++..      ..|+....++-.+++     ..++| ++.|++..|.
T Consensus        76 ~D~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl  116 (162)
T cd04157          76 IDSSDR------LRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDL  116 (162)
T ss_pred             EeCCcH------HHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccc
Confidence            999853      223222222222333     24666 5667888885

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04114 Rab30 Rab30 subfamily

Probab=94.03  E-value=0.52  Score=45.87  Aligned_cols=102  Identities=9%  Similarity=0.078  Sum_probs=58.5

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCC-CCC-cc--------eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEG-TGA-LS--------STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL  147 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~~~-g~--------~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl  147 (795)
                      .-|+|+|+++.+.. +|    ++.++... ... ++        .++.....+.++.|+.++.. ....+ -...+.||.
T Consensus         8 ~~v~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   82 (169)
T cd04114           8 FKIVLIGNAGVGKT-CL----VRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA   82 (169)
T ss_pred             eEEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            45899999998886 67    44443211 111 11        12333444457788888732 34443 567788999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHH---HHHHhcCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCL---SVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L---~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +|+++|.+.+      ..|+.- ...+   +.+...++|. +.|.+..|.
T Consensus        83 ~i~v~d~~~~------~s~~~~-~~~~~~l~~~~~~~~~~-i~v~NK~D~  124 (169)
T cd04114          83 LILTYDITCE------ESFRCL-PEWLREIEQYANNKVIT-ILVGNKIDL  124 (169)
T ss_pred             EEEEEECcCH------HHHHHH-HHHHHHHHHhCCCCCeE-EEEEECccc
Confidence            9999998853      223311 1233   3333346665 455777775

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04159 Arl10_like Arl10-like subfamily

Probab=94.02  E-value=0.91  Score=42.89  Aligned_cols=99  Identities=14%  Similarity=0.163  Sum_probs=59.4

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC------cc--eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEEe
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------LS--STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAFV  151 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g~--~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll~  151 (795)
                      |+|+|+++.+.. +|    ++.++......      |.  ..+..+.  ..+.++..+-. .+..+ -..++-+|.+|++
T Consensus         2 i~i~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v   74 (159)
T cd04159           2 ITLVGLQNSGKT-TL----VNVIAGGQFSEDTIPTVGFNMRKVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYV   74 (159)
T ss_pred             EEEEcCCCCCHH-HH----HHHHccCCCCcCccCCCCcceEEEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence            789999998886 77    55554432111      21  2333343  56778877621 23333 3557889999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      +|++..      ..|+.....+..+++.+   +.| ++.|++..|.
T Consensus        75 ~d~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~  113 (159)
T cd04159          75 VDAADR------TALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDL  113 (159)
T ss_pred             EECCCH------HHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccc
Confidence            999842      22444344455555443   454 5677888775

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04151 Arl1 Arl1 subfamily

Probab=93.99  E-value=1  Score=43.51  Aligned_cols=140  Identities=11%  Similarity=0.101  Sum_probs=74.8

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC-----CCc--ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT-----GAL--SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA  152 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g--~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~i  152 (795)
                      |+|+|.++.+.. +|    +..++....     +.|  ..++..  .+.++.|+.++-. ++..+-. ..+-||.+|+|+
T Consensus         2 v~lvG~~~~GKT-sl----~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~   74 (158)
T cd04151           2 ILILGLDNAGKT-TI----LYRLQLGEVVTTIPTIGFNVETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV   74 (158)
T ss_pred             EEEECCCCCCHH-HH----HHHHccCCCcCcCCccCcCeEEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence            689999998876 66    333322111     112  112222  2467889988732 3555433 467899999999


Q ss_pred             eCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCcchh-hhHHHHHHHHhhccccc-CCCCeeEEeCC--H
Q 003796          153 SASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEF-PEDCKFYAADT--K  226 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef-~~~~Klf~l~~--~  226 (795)
                      |++..      ..|+.....+...++...+  ..++.|+++.|.... ....+.+.+..   .++ ..+.++|.+|.  .
T Consensus        75 d~~~~------~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~---~~~~~~~~~~~~~Sa~~~  145 (158)
T cd04151          75 DSTDR------DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGL---SELKDRTWSIFKTSAIKG  145 (158)
T ss_pred             ECCCH------HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCc---cccCCCcEEEEEeeccCC
Confidence            99842      2244334455555554332  345777888885101 11222222211   111 12346888884  3


Q ss_pred             HHHHHHHHHHh
Q 003796          227 DELHKFLWLFK  237 (795)
Q Consensus       227 ~E~~nL~R~Is  237 (795)
                      ..+..|...|+
T Consensus       146 ~gi~~l~~~l~  156 (158)
T cd04151         146 EGLDEGMDWLV  156 (158)
T ss_pred             CCHHHHHHHHh
Confidence            44555555554

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=93.96  E-value=0.99  Score=43.92  Aligned_cols=141  Identities=16%  Similarity=0.186  Sum_probs=72.8

Q ss_pred             EEEecCCCccChhhHHHHHHH-hhc-cCCCCC---cceEEEecCceeeEEEEeCCCCC---hHHHHHHHhhhceEEEeee
Q 003796           82 IVLFGLSASVNLNSVREDLLR-QLS-SEGTGA---LSSTVSSSKYRLRTSVLQAPHGD---LVGCMEMAKVADLVAFVAS  153 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk-~~~-~~~~~~---g~~tv~~~r~k~Ritfie~~~~d---l~~~LD~aKvADlVll~id  153 (795)
                      |+|+|+++.+.. +|++.++. .+. .+..+.   ....+......-++.++..+...   ........+-||.+|+++|
T Consensus         2 i~vvG~~~~GKt-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           2 IAVLGASGVGKS-ALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             EEEECCCCCcHH-HHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            789999998876 66322221 011 111111   12223334334578889887322   2345567788999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~a-----qG~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                      ++..      ..|+.- ..++..++.     .+.| ++.|.+..|....+   .....+..     ..+  +..+|..|.
T Consensus        81 ~~~~------~s~~~~-~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~--~~~~~e~Sa  145 (165)
T cd04146          81 ITDR------SSFDEI-SQLKQLIREIKKRDREIP-VILVGNKADLLHYRQVSTEEGEKLA-----SEL--GCLFFEVSA  145 (165)
T ss_pred             CCCH------HHHHHH-HHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCccCHHHHHHHH-----HHc--CCEEEEeCC
Confidence            9853      234422 112233332     3555 56667877751011   11111211     122  356777775


Q ss_pred             H---HHHHHHHHHHhh
Q 003796          226 K---DELHKFLWLFKE  238 (795)
Q Consensus       226 ~---~E~~nL~R~Is~  238 (795)
                      .   ..+..+...|+.
T Consensus       146 ~~~~~~v~~~f~~l~~  161 (165)
T cd04146         146 AEDYDGVHSVFHELCR  161 (165)
T ss_pred             CCCchhHHHHHHHHHH
Confidence            3   346666666653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=93.90  E-value=1.1  Score=52.69  Aligned_cols=132  Identities=12%  Similarity=0.194  Sum_probs=69.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCC--C------cceEEEecCceeeEEEEeCCCCCh----------HHHHHHHh
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSSTVSSSKYRLRTSVLQAPHGDL----------VGCMEMAK  143 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~tv~~~r~k~Ritfie~~~~dl----------~~~LD~aK  143 (795)
                      |++||+|+.+.+ +|    +..++.....  .      .|+.-++.-...+|+|+..| .=+          ...|-.+.
T Consensus       162 V~LVG~PNAGKS-TL----ln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtP-Gliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        162 VGLVGFPSAGKS-SL----ISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVP-GLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             EEEEEcCCCCHH-HH----HHHHhcCCccccccCcccccceEEEEEECCeEEEEEECC-CCccccchhhHHHHHHHHHHH
Confidence            899999998886 77    5555432211  1      22221121123578899887 522          34566677


Q ss_pred             hhceEEEeeeCCCccc-cccccccChHHHHHHHHH----------HhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc
Q 003796          144 VADLVAFVASASSFSE-ESMSYYIDSFGNQCLSVF----------RSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS  212 (795)
Q Consensus       144 vADlVll~idas~g~~-~~~~~~fe~eg~e~L~~l----------~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~  212 (795)
                      -||+||+|+|++.... .+.-..++..-.|+...+          ...+.|. |.|++..|.  .........++..+..
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~-IVVlNKiDL--~da~el~e~l~~~l~~  312 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPR-LVVLNKIDV--PDARELAEFVRPELEA  312 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCE-EEEEECccc--hhhHHHHHHHHHHHHH
Confidence            7999999999974100 000001233333444333          2345664 567888775  1111222223333322


Q ss_pred             ccCCCCeeEEeCC
Q 003796          213 EFPEDCKFYAADT  225 (795)
Q Consensus       213 ef~~~~Klf~l~~  225 (795)
                      .   +.++|.+|.
T Consensus       313 ~---g~~Vf~ISA  322 (500)
T PRK12296        313 R---GWPVFEVSA  322 (500)
T ss_pred             c---CCeEEEEEC
Confidence            1   467999983

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=93.84  E-value=1.5  Score=42.20  Aligned_cols=100  Identities=14%  Similarity=0.187  Sum_probs=58.8

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA  152 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g--~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~i  152 (795)
                      |+|+|+++++.. +|    +..|.......     |  ...+..+ .+.++.++..+-. .+..+.. ..+-||.+|+|+
T Consensus         2 i~i~G~~~~GKT-sl----~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~   75 (160)
T cd04156           2 VLLLGLDSAGKS-TL----LYKLKHAELVTTIPTVGFNVEMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV   75 (160)
T ss_pred             EEEEcCCCCCHH-HH----HHHHhcCCcccccCccCcceEEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            789999998886 67    45443322111     1  1122223 2467888888722 2344333 467799999999


Q ss_pred             eCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          153 SASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      |++..      ..|+..-..+..+++.   .+.| ++.|++..|.
T Consensus        76 D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  113 (160)
T cd04156          76 DSSDE------ARLDESQKELKHILKNEHIKGVP-VVLLANKQDL  113 (160)
T ss_pred             ECCcH------HHHHHHHHHHHHHHhchhhcCCC-EEEEEECccc
Confidence            99853      2244444444444443   4544 6667887774

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=93.82  E-value=1.1  Score=44.28  Aligned_cols=102  Identities=15%  Similarity=0.114  Sum_probs=61.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhcc-CC----CCCcc--eEEEecCceeeEEEEeCCCCC--hHHHH-HHHhhhceE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSS-EG----TGALS--STVSSSKYRLRTSVLQAPHGD--LVGCM-EMAKVADLV  148 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~----~~~g~--~tv~~~r~k~Ritfie~~~~d--l~~~L-D~aKvADlV  148 (795)
                      .+-|+++|+++++.. +|    +..++. .-    .+.|.  .++...  +.++.|+..+ ..  +..+. ...+-||.+
T Consensus        15 ~~kv~~~G~~~~GKT-sl----~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~D~~-G~~~~~~~~~~~~~~~d~v   86 (174)
T cd04153          15 EYKVIIVGLDNAGKT-TI----LYQFLLGEVVHTSPTIGSNVEEIVYK--NIRFLMWDIG-GQESLRSSWNTYYTNTDAV   86 (174)
T ss_pred             ccEEEEECCCCCCHH-HH----HHHHccCCCCCcCCccccceEEEEEC--CeEEEEEECC-CCHHHHHHHHHHhhcCCEE
Confidence            356899999998886 66    444422 11    11122  122222  3578888887 43  33333 346889999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      |||+|++..      +.|...-.++.++++..++  +.++.|++..|.
T Consensus        87 i~V~D~s~~------~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl  128 (174)
T cd04153          87 ILVIDSTDR------ERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL  128 (174)
T ss_pred             EEEEECCCH------HHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence            999999853      2354444556666666654  345667888875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01866 Rab2 Rab2 subfamily

Probab=93.79  E-value=0.87  Score=44.64  Aligned_cols=102  Identities=7%  Similarity=0.002  Sum_probs=61.0

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLV  148 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlV  148 (795)
                      =|+|+|.++.+.. +|    +..|....      .+.|    +.++.......+++++..+-. .+.++. -.++-||.+
T Consensus         6 ki~vvG~~~vGKS-sL----l~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           6 KYIIIGDTGVGKS-CL----LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             EEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            4899999998886 67    44443322      1112    233444444558888887632 234432 356789999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~  194 (795)
                      |||+|++..      ..|+. -..++..++.+..|  .++.|.+..|.
T Consensus        81 l~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl  121 (168)
T cd01866          81 LLVYDITRR------ETFNH-LTSWLEDARQHSNSNMTIMLIGNKCDL  121 (168)
T ss_pred             EEEEECCCH------HHHHH-HHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            999999842      22432 33566666555333  45666788885

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01861 Rab6 Rab6 subfamily

Probab=93.68  E-value=0.9  Score=43.71  Aligned_cols=101  Identities=9%  Similarity=0.038  Sum_probs=58.7

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC--CC----c----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT--GA----L----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~--~~----g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVl  149 (795)
                      |+++|+++++.. +|    +..+.....  ..    +    ...+..+....++.++.+|-.. ... +-..++-||++|
T Consensus         3 i~liG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii   77 (161)
T cd01861           3 LVFLGDQSVGKT-SI----ITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   77 (161)
T ss_pred             EEEECCCCCCHH-HH----HHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            789999998876 67    444432221  11    1    2233344445678999987322 223 344578899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHH-HHhcCC-CceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSV-FRSLGL-PSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~-l~aqG~-P~vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+... ..+.. ++..+- ..++.|+++.|.
T Consensus        78 ~v~d~~~~------~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~  117 (161)
T cd01861          78 VVYDITNR------QSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDL  117 (161)
T ss_pred             EEEECcCH------HHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhc
Confidence            99999853      2354433 34443 334441 345566777775

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=93.59  E-value=1.1  Score=51.21  Aligned_cols=143  Identities=8%  Similarity=0.135  Sum_probs=77.1

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC-------CC-cceEEEec-CceeeEEEEeCCCCCh----------HHHHHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GA-LSSTVSSS-KYRLRTSVLQAPHGDL----------VGCMEMA  142 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~-g~~tv~~~-r~k~Ritfie~~~~dl----------~~~LD~a  142 (795)
                      |++||+|+.+.+ +|    ++.+++...       +. .|+.-++. .-.++|+|+-.| .=+          ..+|...
T Consensus       162 ValVG~PNaGKS-TL----ln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtP-Gi~~~a~~~~~Lg~~~l~~i  235 (390)
T PRK12298        162 VGLLGLPNAGKS-TF----IRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIP-GLIEGASEGAGLGIRFLKHL  235 (390)
T ss_pred             EEEEcCCCCCHH-HH----HHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCC-CccccccchhhHHHHHHHHH
Confidence            999999998875 67    444443321       11 22222221 113679999887 432          3567778


Q ss_pred             hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCC
Q 003796          143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPED  217 (795)
Q Consensus       143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~  217 (795)
                      .=||++|+|+|++.....   ..++ .-..+++.|...     +.|. +.|++.+|.  -......+.++... ..+...
T Consensus       236 ~radvlL~VVD~s~~~~~---d~~e-~~~~l~~eL~~~~~~L~~kP~-IlVlNKiDl--~~~~el~~~l~~l~-~~~~~~  307 (390)
T PRK12298        236 ERCRVLLHLIDIAPIDGS---DPVE-NARIIINELEKYSPKLAEKPR-WLVFNKIDL--LDEEEAEERAKAIV-EALGWE  307 (390)
T ss_pred             HhCCEEEEEeccCccccc---ChHH-HHHHHHHHHHhhhhhhcCCCE-EEEEeCCcc--CChHHHHHHHHHHH-HHhCCC
Confidence            889999999998721000   1111 123444555443     4554 557898886  11122222333221 222222


Q ss_pred             CeeEEeCC--HHHHHHHHHHHhh
Q 003796          218 CKFYAADT--KDELHKFLWLFKE  238 (795)
Q Consensus       218 ~Klf~l~~--~~E~~nL~R~Is~  238 (795)
                      .++|.+|.  ...+..|+..|..
T Consensus       308 ~~Vi~ISA~tg~GIdeLl~~I~~  330 (390)
T PRK12298        308 GPVYLISAASGLGVKELCWDLMT  330 (390)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHH
Confidence            36888884  4456667777654

>PTZ00416 elongation factor 2; Provisional

Probab=93.58  E-value=0.31  Score=60.81  Aligned_cols=64  Identities=11%  Similarity=0.073  Sum_probs=51.7

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ..++.|+.+|- .| +..++.+++.||.+|||+||..|        +...+..+++.+...|+|.+ .+++.+|.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g--------~~~~t~~~~~~~~~~~~p~i-v~iNK~D~  156 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG--------VCVQTETVLRQALQERIRPV-LFINKVDR  156 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC--------cCccHHHHHHHHHHcCCCEE-EEEEChhh
Confidence            35799999983 23 45688899999999999999965        78889999999999999875 45666664

>cd01898 Obg Obg subfamily

Probab=93.55  E-value=0.92  Score=44.06  Aligned_cols=142  Identities=15%  Similarity=0.134  Sum_probs=69.9

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCC--C--cc------eEEEecCceeeEEEEeCCCCC----------hHHHHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTG--A--LS------STVSSSKYRLRTSVLQAPHGD----------LVGCMEM  141 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~--g~------~tv~~~r~k~Ritfie~~~~d----------l~~~LD~  141 (795)
                      |+|||.++.+.. +|    ++.++.....  .  ++      -.+..+. ..+++|+..| .-          ....+..
T Consensus         3 v~ivG~~~~GKS-tl----~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~Dtp-G~~~~~~~~~~~~~~~~~~   75 (170)
T cd01898           3 VGLVGLPNAGKS-TL----LSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIP-GLIEGASEGKGLGHRFLRH   75 (170)
T ss_pred             eEEECCCCCCHH-HH----HHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecC-cccCcccccCCchHHHHHH
Confidence            799999998886 77    5555433211  1  11      1122222 2378888887 41          1233444


Q ss_pred             HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHh-cCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796          142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-LGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF  220 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a-qG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl  220 (795)
                      .+-||.+|+++|++...  +....+..+-.++...... .+.| ++.|++..|.  ..+......++.... .. ....+
T Consensus        76 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl--~~~~~~~~~~~~~~~-~~-~~~~~  148 (170)
T cd01898          76 IERTRLLLHVIDLSGDD--DPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDL--LDEEELFELLKELLK-EL-WGKPV  148 (170)
T ss_pred             HHhCCEEEEEEecCCCC--CHHHHHHHHHHHHHHhCccccccc-cEEEEEchhc--CCchhhHHHHHHHHh-hC-CCCCE
Confidence            56699999999998520  0000122222233322211 2334 4567888885  111222222222222 21 13456


Q ss_pred             EEeCC--HHHHHHHHHHHh
Q 003796          221 YAADT--KDELHKFLWLFK  237 (795)
Q Consensus       221 f~l~~--~~E~~nL~R~Is  237 (795)
                      |.+|.  ...+..|...|+
T Consensus       149 ~~~Sa~~~~gi~~l~~~i~  167 (170)
T cd01898         149 FPISALTGEGLDELLRKLA  167 (170)
T ss_pred             EEEecCCCCCHHHHHHHHH
Confidence            77663  344556655554

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=93.53  E-value=0.45  Score=51.63  Aligned_cols=131  Identities=10%  Similarity=0.059  Sum_probs=103.6

Q ss_pred             eeEEEEeCCCCCh--HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh
Q 003796          123 LRTSVLQAPHGDL--VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR  199 (795)
Q Consensus       123 ~Ritfie~~~~dl--~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~  199 (795)
                      |-++|+.||--|+  ..||.-|-|.|-+||++-|...+       =...|-|-|.++...-+-.+|-+-+.+|. .-...
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC-------PQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A  197 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC-------PQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQA  197 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-------CCCchhhHHHHHHHhhhceEEEEechhhhhhHHHH
Confidence            6789999997674  57999999999999999888543       23467888888888888888877667775 11223


Q ss_pred             HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796          200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDV  260 (795)
Q Consensus       200 ~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~  260 (795)
                      ...-..+++++..-...++-+.++|.  +=.|--++-+|...-|-|++==.+.|-|++=|-=+
T Consensus       198 ~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFD  260 (466)
T KOG0466|consen  198 LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFD  260 (466)
T ss_pred             HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEeec
Confidence            45667888899998999999999884  55677899999988888888778899998877443

>COG1160 Predicted GTPases [General function prediction only]

Probab=93.37  E-value=1.1  Score=51.23  Aligned_cols=133  Identities=14%  Similarity=0.107  Sum_probs=83.2

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCC------CC--C-cceEEEecCceeeEEEEeCC-------------CCCh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TG--A-LSSTVSSSKYRLRTSVLQAP-------------HGDL  135 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~--~-g~~tv~~~r~k~Ritfie~~-------------~~dl  135 (795)
                      .|+=|||||=|..+.+ +|    +..+.+..      ..  + -+|++...+.-|++.||.--             .-.+
T Consensus       177 ~~ikiaiiGrPNvGKS-sL----iN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv  251 (444)
T COG1160         177 DPIKIAIIGRPNVGKS-SL----INAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSV  251 (444)
T ss_pred             CceEEEEEeCCCCCch-HH----HHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEee
Confidence            6888999999998775 77    44443322      11  1 23333222122333333220             1334


Q ss_pred             HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEe--ccCCcchhhhHHHHHHHHhhcccc
Q 003796          136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI--RDLPTDLKKRKDLKKMCISSLTSE  213 (795)
Q Consensus       136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl--~~Ld~~~Kk~~~~kK~lk~~f~~e  213 (795)
                      ...+-+..-||+||||+||+.|        |.++-..+++.+.-.|-+-||.|=  .-++.+.......++.|.+.|.+ 
T Consensus       252 ~rt~~aI~~a~vvllviDa~~~--------~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~-  322 (444)
T COG1160         252 ARTLKAIERADVVLLVIDATEG--------ISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPF-  322 (444)
T ss_pred             hhhHhHHhhcCEEEEEEECCCC--------chHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcc-
Confidence            4556667779999999999955        888899999999999999999871  11221113344567777764443 


Q ss_pred             cCCCCeeEEeCC
Q 003796          214 FPEDCKFYAADT  225 (795)
Q Consensus       214 f~~~~Klf~l~~  225 (795)
                      + +.+.++++|.
T Consensus       323 l-~~a~i~~iSA  333 (444)
T COG1160         323 L-DFAPIVFISA  333 (444)
T ss_pred             c-cCCeEEEEEe
Confidence            2 3689999983

>smart00175 RAB Rab subfamily of small GTPases

Probab=93.32  E-value=0.68  Score=44.54  Aligned_cols=101  Identities=12%  Similarity=0.090  Sum_probs=60.0

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVl  149 (795)
                      |+|+|+++++.. +|    ++.+.......          ...++.....+.++.++.+|..+ ...+ .-.++-||.+|
T Consensus         3 v~v~G~~~~GKT-tl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   77 (164)
T smart00175        3 IILIGDSGVGKS-SL----LSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL   77 (164)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence            789999998886 67    44443322111          12334444445688899887322 2223 33456799999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      +++|++..      ..|+.- ..+|+.+..+.-  +.++.|.++.|.
T Consensus        78 lv~d~~~~------~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~  117 (164)
T smart00175       78 LVYDITNR------ESFENL-KNWLKELREYADPNVVIMLVGNKSDL  117 (164)
T ss_pred             EEEECCCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhc
Confidence            99999853      234332 235666655542  345556788775

Rab GTPases are implicated in vesicle trafficking.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=93.23  E-value=0.9  Score=42.43  Aligned_cols=100  Identities=13%  Similarity=0.170  Sum_probs=52.6

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCC-CChHHHHH--------
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPH-GDLVGCME--------  140 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~-~dl~~~LD--------  140 (795)
                      +=|+++|.+++++. +|    +..+.......          ....+..+.....+.++.+|. .+..++..        
T Consensus         2 ~ki~~~G~~~~GKs-tl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   76 (161)
T TIGR00231         2 IKIVIVGDPNVGKS-TL----LNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVES   76 (161)
T ss_pred             eEEEEECCCCCCHH-HH----HHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhE
Confidence            34899999998886 67    44333222111          111133333235678899873 23333222        


Q ss_pred             HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++.++|++++++++..        ....+...+++.+.. +.| ++.|+++.|.
T Consensus        77 ~i~~~d~~~~v~~~~~--------~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~  120 (161)
T TIGR00231        77 SLRVFDIVILVLDVEE--------ILEKQTKEIIHHAES-NVP-IILVGNKIDL  120 (161)
T ss_pred             EEEEEEEeeeehhhhh--------HhHHHHHHHHHhccc-CCc-EEEEEEcccC
Confidence            2334555555555542        122444555555543 777 5667888886

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04113 Rab4 Rab4 subfamily

Probab=92.88  E-value=1  Score=43.52  Aligned_cols=100  Identities=10%  Similarity=0.049  Sum_probs=58.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC-CC-----c----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT-GA-----L----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~~-----g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVl  149 (795)
                      |+|+|+++.+.. +|    +..|..... ..     |    ...+..+...-++.++.++.. ....+ ...++-||.+|
T Consensus         3 i~v~G~~~vGKT-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i   77 (161)
T cd04113           3 FIIIGSSGTGKS-CL----LHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL   77 (161)
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE
Confidence            789999998886 67    444432221 11     2    223344444568889998732 23333 34467899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      +++|++..      ..|+. -.+++..++.   .++| ++.|++..|.
T Consensus        78 ~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~-iivv~nK~D~  117 (161)
T cd04113          78 LVYDITNR------TSFEA-LPTWLSDARALASPNIV-VILVGNKSDL  117 (161)
T ss_pred             EEEECCCH------HHHHH-HHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence            99999853      22322 1234444433   3555 6667788875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01862 Rab7 Rab7 subfamily

Probab=92.88  E-value=1.9  Score=41.84  Aligned_cols=101  Identities=13%  Similarity=0.120  Sum_probs=57.4

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVl  149 (795)
                      |+|+|+++.+.. +|    +..|.....      +.|    +..+..+...-.+.|+.+|.. ....+. ..++-||.+|
T Consensus         3 i~viG~~~~GKS-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   77 (172)
T cd01862           3 VIILGDSGVGKT-SL----MNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV   77 (172)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE
Confidence            899999998886 67    444432211      112    123334444566778999732 233333 3566799999


Q ss_pred             EeeeCCCccccccccccC---hHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYID---SFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe---~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      +++|++..      ..|+   .+-.+++..+...   +.|- +.|++..|.
T Consensus        78 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl  121 (172)
T cd01862          78 LVYDVTNP------KSFESLDSWRDEFLIQASPSDPENFPF-VVLGNKIDL  121 (172)
T ss_pred             EEEECCCH------HHHHHHHHHHHHHHHhcCccCCCCceE-EEEEECccc
Confidence            99999853      2233   2333444444322   5564 455677665

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=92.80  E-value=2  Score=43.08  Aligned_cols=100  Identities=9%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcce--EEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceEE
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALSS--TVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVA  149 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~~--tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlVl  149 (795)
                      .-|+++|+++.+.+ +|    ++.+.....     +.++.  ++...  +.++.++.++ ..  ...+ -...+-||.+|
T Consensus        18 ~~i~ivG~~~~GKT-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~-G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       18 AKILFLGLDNAGKT-TL----LHMLKNDRLAQHQPTQHPTSEELAIG--NIKFTTFDLG-GHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             CEEEEECCCCCCHH-HH----HHHHhcCCCcccCCccccceEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhCCCCEEE
Confidence            45789999998886 67    444433211     11332  22222  3578888887 43  2222 34467899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~  194 (795)
                      +|+|++..      ..|+..-.++..+++   ..|.| ++.|++..|.
T Consensus        90 ~vvD~~~~------~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl  130 (184)
T smart00178       90 YLVDAYDK------ERFAESKRELDALLSDEELATVP-FLILGNKIDA  130 (184)
T ss_pred             EEEECCcH------HHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccc
Confidence            99999842      224333334444443   35665 6677888775

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK07560 elongation factor EF-2; Reviewed

Probab=92.66  E-value=0.55  Score=57.81  Aligned_cols=106  Identities=13%  Similarity=0.078  Sum_probs=71.0

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh---ccC--------C--CCC--cceEEEe---------cCceeeEEEEeCCC-C
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL---SSE--------G--TGA--LSSTVSS---------SKYRLRTSVLQAPH-G  133 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~---~~~--------~--~~~--g~~tv~~---------~r~k~Ritfie~~~-~  133 (795)
                      -+-|+|+|..+.+.. +|+..|+..-   .+.        +  ..+  .-+|+.+         ...+..+.||.||- .
T Consensus        20 iRni~iigh~d~GKT-TL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         20 IRNIGIIAHIDHGKT-TLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             ccEEEEEEeCCCCHH-HHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            456999999887765 5655555321   000        0  000  1122221         11256789999982 3


Q ss_pred             C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      | ...+..+...||.+|+|+|+..|        ++..+..+++.+...|+|. |.+++.+|.
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g--------~~~~t~~~~~~~~~~~~~~-iv~iNK~D~  151 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEG--------VMPQTETVLRQALRERVKP-VLFINKVDR  151 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCC--------CCccHHHHHHHHHHcCCCe-EEEEECchh
Confidence            4 35677788999999999999965        7778999999988999996 667777773

>cd01863 Rab18 Rab18 subfamily

Probab=92.64  E-value=1.8  Score=41.66  Aligned_cols=100  Identities=11%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVl  149 (795)
                      |+|+|+++++.. +|    +..|+...      .+.+    +..+..+....++.|+.+|... ...+ --.++-||.+|
T Consensus         3 i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   77 (161)
T cd01863           3 ILLIGDSGVGKS-SL----LLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVI   77 (161)
T ss_pred             EEEECCCCCCHH-HH----HHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEE
Confidence            789999998886 67    33333221      1112    2233344445678888987322 2222 23457799999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~  194 (795)
                      +++|++..      ..|+.... +++.+..+    +.| ++.|.+..|.
T Consensus        78 ~v~d~~~~------~s~~~~~~-~~~~i~~~~~~~~~~-~~iv~nK~D~  118 (161)
T cd01863          78 LVYDVTRR------DTFTNLET-WLNELETYSTNNDIV-KMLVGNKIDK  118 (161)
T ss_pred             EEEECCCH------HHHHhHHH-HHHHHHHhCCCCCCc-EEEEEECCcc
Confidence            99998853      23443222 44544443    444 4555677775

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=92.31  E-value=0.78  Score=42.24  Aligned_cols=94  Identities=16%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hccCCCCC----cceE--EEecCceeeEEEEeCCCC-C----------hHHHHHHHh
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LSSEGTGA----LSST--VSSSKYRLRTSVLQAPHG-D----------LVGCMEMAK  143 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~----g~~t--v~~~r~k~Ritfie~~~~-d----------l~~~LD~aK  143 (795)
                      |+|+|+++++.. +|++.|... +...+...    .+..  +...  ...+.|+..|.- +          +...+....
T Consensus         2 V~iiG~~~~GKS-Tlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    2 VAIIGRPNVGKS-TLINALTGKKLAKVSNIPGTTRDPVYGQFEYN--NKKFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEESTTSSHH-HHHHHHHTSTSSEESSSTTSSSSEEEEEEEET--TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHH-HHHHHHhccccccccccccceeeeeeeeeeec--eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            789999998886 774444431 10111100    2211  1122  467789988741 1          234677778


Q ss_pred             hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEE
Q 003796          144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAV  187 (795)
Q Consensus       144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vig  187 (795)
                      -+|++|+++|++.        ..+..-.++++.|+ ++-|-++.
T Consensus        79 ~~d~ii~vv~~~~--------~~~~~~~~~~~~l~-~~~~~i~v  113 (116)
T PF01926_consen   79 KSDLIIYVVDASN--------PITEDDKNILRELK-NKKPIILV  113 (116)
T ss_dssp             TESEEEEEEETTS--------HSHHHHHHHHHHHH-TTSEEEEE
T ss_pred             HCCEEEEEEECCC--------CCCHHHHHHHHHHh-cCCCEEEE
Confidence            8999999999873        23445667888887 66665543

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=92.30  E-value=0.53  Score=53.21  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=71.8

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCc-cccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSF-SEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK  197 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g-~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K  197 (795)
                      |.+||++.||- +| +-.||--|..||..||+|||+.| ||-.  -+.+-.|.|-+=+++.+|+...|.+++.+|. +|.
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g--~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd  161 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAG--FGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccc--cccCCchhHHHHHHHhcCCceEEEEEEcccccccC
Confidence            57899999974 44 67899999999999999999976 1110  1134578899999999999999999999884 332


Q ss_pred             h--hHHHHHHHHhhccc--ccCCCCeeEEeC
Q 003796          198 K--RKDLKKMCISSLTS--EFPEDCKFYAAD  224 (795)
Q Consensus       198 k--~~~~kK~lk~~f~~--ef~~~~Klf~l~  224 (795)
                      +  -..++..+.+.+..  +.++..++.++|
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiS  192 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPIS  192 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecc
Confidence            2  23466666663333  223345677766

>cd04136 Rap_like Rap-like subfamily

Probab=92.23  E-value=1.5  Score=42.21  Aligned_cols=106  Identities=10%  Similarity=0.096  Sum_probs=57.9

Q ss_pred             EEEEecCCCccChhhHHHHHHHh-hc-cCCCCCc---ceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEEEeee
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQ-LS-SEGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAFVAS  153 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~-~~-~~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVll~id  153 (795)
                      -|+|+|.++.+.. +|++.++.. +. .+..+.+   ..++..+..+.++.++..+. ..+.++.. ..+-||.+||++|
T Consensus         3 ki~i~G~~~vGKT-sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           3 KVVVLGSGGVGKS-ALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             EEEEECCCCCCHH-HHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            4889999998886 673332321 10 0111111   12233444456778888863 23444443 3577999999999


Q ss_pred             CCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          154 ASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+..      ..|+.   +-.++++.....++| ++.|++..|.
T Consensus        82 ~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl  118 (163)
T cd04136          82 ITSQ------SSFNDLQDLREQILRVKDTENVP-MVLVGNKCDL  118 (163)
T ss_pred             CCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            8742      22432   223333332334666 5567787775

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01860 Rab5_related Rab5-related subfamily

Probab=92.22  E-value=1.9  Score=41.53  Aligned_cols=101  Identities=12%  Similarity=0.071  Sum_probs=59.8

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVl  149 (795)
                      |+|+|+++++.. +|    +..|....      .+.|    ..++......-++.++.++-. ...++. ..++-||.+|
T Consensus         4 i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   78 (163)
T cd01860           4 LVLLGDSSVGKS-SL----VLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI   78 (163)
T ss_pred             EEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence            789999998886 67    44443322      1113    234455544456777777621 122222 2456699999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~  194 (795)
                      |++|++..      ..|+. ...+|+.++.++-+.  ++.|++..|.
T Consensus        79 ~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~  118 (163)
T cd01860          79 VVYDITSE------ESFEK-AKSWVKELQRNASPNIIIALVGNKADL  118 (163)
T ss_pred             EEEECcCH------HHHHH-HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            99999843      23443 346677777776443  3445677774

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=92.03  E-value=1.8  Score=42.48  Aligned_cols=137  Identities=9%  Similarity=0.047  Sum_probs=73.7

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC-CcceEEEecCceeeEEEEeCCC------CChHHHHHHHhhhceEEEeee
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG-ALSSTVSSSKYRLRTSVLQAPH------GDLVGCMEMAKVADLVAFVAS  153 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-~g~~tv~~~r~k~Ritfie~~~------~dl~~~LD~aKvADlVll~id  153 (795)
                      -|+++|.++.+.. +|+    ..+++.... ....++.....    .++.+|-      .-...|+.+++-||++|+++|
T Consensus         3 ~i~~iG~~~~GKs-tl~----~~l~~~~~~~~~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d   73 (158)
T PRK15467          3 RIAFVGAVGAGKT-TLF----NALQGNYTLARKTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG   73 (158)
T ss_pred             EEEEECCCCCCHH-HHH----HHHcCCCccCccceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence            3899999998876 673    334332211 12222222211    1466652      235567888999999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHH
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHK  231 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~n  231 (795)
                      ++.+      ..+.  ...++.+  ..+.| +++|++..|.........++.+++     +.....+|.+|.  ...+..
T Consensus        74 ~~~~------~s~~--~~~~~~~--~~~~~-ii~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~p~~~~Sa~~g~gi~~  137 (158)
T PRK15467         74 ANDP------ESRL--PAGLLDI--GVSKR-QIAVISKTDMPDADVAATRKLLLE-----TGFEEPIFELNSHDPQSVQQ  137 (158)
T ss_pred             CCCc------cccc--CHHHHhc--cCCCC-eEEEEEccccCcccHHHHHHHHHH-----cCCCCCEEEEECCCccCHHH
Confidence            9854      1111  1222322  13455 678888887511222223333332     221357888884  344666


Q ss_pred             HHHHHhhcccc
Q 003796          232 FLWLFKEQRLT  242 (795)
Q Consensus       232 L~R~Is~~k~r  242 (795)
                      |...|+.....
T Consensus       138 l~~~l~~~~~~  148 (158)
T PRK15467        138 LVDYLASLTKQ  148 (158)
T ss_pred             HHHHHHHhchh
Confidence            66666554433

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=91.96  E-value=2.2  Score=41.17  Aligned_cols=105  Identities=10%  Similarity=0.089  Sum_probs=59.3

Q ss_pred             EEEecCCCccChhhHHHHHHHhh-c-cCCCCC---cceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEEEeeeC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQL-S-SEGTGA---LSSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAFVASA  154 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~-~-~~~~~~---g~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVll~ida  154 (795)
                      |+|+|+++++.. +|++.++..- . .+..+.   -..++..+...-++.++..+. ..+..+.. ..+-||.+|+++|+
T Consensus         3 i~v~G~~~~GKT-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~   81 (164)
T smart00173        3 LVVLGSGGVGKS-ALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSI   81 (164)
T ss_pred             EEEECCCCCCHH-HHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEEC
Confidence            789999998876 6733333211 0 011111   122333333356778888863 34555554 57889999999998


Q ss_pred             CCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          155 SSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       155 s~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +..      ..|+.   +-..+++.+..+..| ++.|.+..|.
T Consensus        82 ~~~------~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl  117 (164)
T smart00173       82 TDR------QSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDL  117 (164)
T ss_pred             CCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            852      22433   333444444444555 5566788775

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd00879 Sar1 Sar1 subfamily

Probab=91.93  E-value=3.2  Score=41.38  Aligned_cols=102  Identities=12%  Similarity=0.117  Sum_probs=59.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcc--eEEEecCceeeEEEEeCCCCCh--HHH-HHHHhhhceE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS--STVSSSKYRLRTSVLQAPHGDL--VGC-MEMAKVADLV  148 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~--~tv~~~r~k~Ritfie~~~~dl--~~~-LD~aKvADlV  148 (795)
                      +.-|+|+|++++++. +|    ++.++....     +.++  ..+..+  ..++.++..+ ...  ..+ ....+-||.+
T Consensus        19 ~~ki~ilG~~~~GKS-tL----i~~l~~~~~~~~~~T~~~~~~~i~~~--~~~~~l~D~~-G~~~~~~~~~~~~~~ad~i   90 (190)
T cd00879          19 EAKILFLGLDNAGKT-TL----LHMLKDDRLAQHVPTLHPTSEELTIG--NIKFKTFDLG-GHEQARRLWKDYFPEVDGI   90 (190)
T ss_pred             CCEEEEECCCCCCHH-HH----HHHHhcCCCcccCCccCcceEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhccCCEE
Confidence            444699999998886 67    444433211     1122  223333  3577888886 432  232 4456889999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      |+++|++..      ..|+..-..+..+++....  ..++.|++..|.
T Consensus        91 ilV~D~~~~------~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl  132 (190)
T cd00879          91 VFLVDAADP------ERFQESKEELDSLLSDEELANVPFLILGNKIDL  132 (190)
T ss_pred             EEEEECCcH------HHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence            999999742      2354444455555553332  235666888875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04149 Arf6 Arf6 subfamily

Probab=91.91  E-value=2.7  Score=41.45  Aligned_cols=101  Identities=15%  Similarity=0.115  Sum_probs=59.2

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhcc-CC----CCCcc--eEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEEE
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSS-EG----TGALS--STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF  150 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~----~~~g~--~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVll  150 (795)
                      .=|+++|+++.+.. +|    +..|+. ..    .+.|.  .++...  +.++.++..+-.+ +..+.. ..+-||.+||
T Consensus        10 ~kv~i~G~~~~GKT-sl----i~~l~~~~~~~~~~t~g~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149          10 MRILMLGLDAAGKT-TI----LYKLKLGQSVTTIPTVGFNVETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             cEEEEECcCCCCHH-HH----HHHHccCCCccccCCcccceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            34889999998886 66    444422 11    11121  122222  4578888876222 334333 3588999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      |+|++.-      ..|+..-.++...+..   ++.| ++.|.++.|.
T Consensus        83 v~D~t~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl  122 (168)
T cd04149          83 VVDSADR------DRIDEARQELHRIINDREMRDAL-LLVFANKQDL  122 (168)
T ss_pred             EEeCCch------hhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCC
Confidence            9999842      2355554555555544   3544 6667888885

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04124 RabL2 RabL2 subfamily

Probab=91.80  E-value=7  Score=37.94  Aligned_cols=100  Identities=10%  Similarity=0.074  Sum_probs=58.7

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC--CCC----cc----eEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG--TGA----LS----STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~--~~~----g~----~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVl  149 (795)
                      |+|+|.++.+.. +|    +..|....  ...    ++    ..+........+.++.++. ....++.. ..+-||.+|
T Consensus         3 i~vvG~~~vGKT-sl----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (161)
T cd04124           3 IILLGDSAVGKS-KL----VERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACI   77 (161)
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEE
Confidence            789999998886 67    44332211  111    11    1222333455777888763 22344443 478899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      +|+|++..      ..|+. -.+.+..++..  ++ .++.|++..|.
T Consensus        78 ~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~-p~ivv~nK~Dl  116 (161)
T cd04124          78 LVFDVTRK------ITYKN-LSKWYEELREYRPEI-PCIVVANKIDL  116 (161)
T ss_pred             EEEECCCH------HHHHH-HHHHHHHHHHhCCCC-cEEEEEECccC
Confidence            99999853      22333 23556666544  44 45677888885

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04158 ARD1 ARD1 subfamily

Probab=91.76  E-value=2.9  Score=41.09  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=60.2

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hccCCCCCcc--eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEEEeeeCCC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LSSEGTGALS--STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFVASASS  156 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~g~--~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVll~idas~  156 (795)
                      |+++|++++++. +|++.+... +..+..+.|.  .++..  .+.++.++.++-. ....+. ...+-||.+|+|+|++.
T Consensus         2 vvlvG~~~~GKT-sl~~~l~~~~~~~~~~T~~~~~~~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~   78 (169)
T cd04158           2 VVTLGLDGAGKT-TILFKLKQDEFMQPIPTIGFNVETVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH   78 (169)
T ss_pred             EEEECCCCCCHH-HHHHHHhcCCCCCcCCcCceeEEEEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc
Confidence            679999998886 673332221 0111111122  12222  2467888888732 233333 45688999999999984


Q ss_pred             ccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          157 FSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       157 g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      .      +.|+..-..+..+++.+++  +.++.|.+..|.
T Consensus        79 ~------~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  112 (169)
T cd04158          79 R------DRVSEAHSELAKLLTEKELRDALLLIFANKQDV  112 (169)
T ss_pred             H------HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCc
Confidence            2      3466655556666655454  346667788775

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04106 Rab23_lke Rab23-like subfamily

Probab=91.75  E-value=2.4  Score=40.70  Aligned_cols=137  Identities=7%  Similarity=0.062  Sum_probs=71.5

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEec--CceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSS--KYRLRTSVLQAPHG-DLVGC-MEMAKVADL  147 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g----~~tv~~~--r~k~Ritfie~~~~-dl~~~-LD~aKvADl  147 (795)
                      |+|+|.++++.. +|    +..++......      |    ..++...  ....++.++.+|.. ...++ -...+-||.
T Consensus         3 v~~vG~~~~GKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   77 (162)
T cd04106           3 VIVVGNGNVGKS-SM----IQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQA   77 (162)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCE
Confidence            899999998886 67    44444322111      1    1222222  33457888888632 23333 345678999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHH--hcCCCceEEEeccCCcchhhh---HHHHHHHHhhcccccCCCCeeEE
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFR--SLGLPSTAVLIRDLPTDLKKR---KDLKKMCISSLTSEFPEDCKFYA  222 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~--aqG~P~vigVl~~Ld~~~Kk~---~~~kK~lk~~f~~ef~~~~Klf~  222 (795)
                      +|+++|++..      +.|+.- ...+..+.  ..++| ++.|++..|.. +.+   .+..+.+.+.    +  +.++|.
T Consensus        78 ~v~v~d~~~~------~s~~~l-~~~~~~~~~~~~~~p-~iiv~nK~Dl~-~~~~v~~~~~~~~~~~----~--~~~~~~  142 (162)
T cd04106          78 CILVFSTTDR------ESFEAI-ESWKEKVEAECGDIP-MVLVQTKIDLL-DQAVITNEEAEALAKR----L--QLPLFR  142 (162)
T ss_pred             EEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCC-EEEEEEChhcc-cccCCCHHHHHHHHHH----c--CCeEEE
Confidence            9999998742      223221 12222222  24777 56667887751 111   1111112211    1  346788


Q ss_pred             eCCH--HHHHHHHHHHhh
Q 003796          223 ADTK--DELHKFLWLFKE  238 (795)
Q Consensus       223 l~~~--~E~~nL~R~Is~  238 (795)
                      .|..  ..+..|...|+.
T Consensus       143 ~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         143 TSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            7742  345566666653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=91.61  E-value=0.9  Score=55.82  Aligned_cols=106  Identities=11%  Similarity=0.038  Sum_probs=71.3

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh-------------ccCCCCC--cceEEE---------ecCceeeEEEEeCCC-C
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL-------------SSEGTGA--LSSTVS---------SSKYRLRTSVLQAPH-G  133 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-------------~~~~~~~--g~~tv~---------~~r~k~Ritfie~~~-~  133 (795)
                      -+-|+|+|..+.++. +|++.|+...             ......+  ..+|+.         .......+.|+-+|- .
T Consensus        19 irnI~ivGh~~~GKT-TL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        19 IRNIGIVAHIDHGKT-TLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             ccEEEEEEeCCCCHH-HHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            367999999887775 6655545321             0000000  112221         222356889999873 2


Q ss_pred             C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      + ...+..+...||.+|||+|+..|        +..++.++++.+...+.|.+ .|++.+|.
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g--------~~~~t~~~~~~~~~~~~p~i-vviNKiD~  150 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEG--------VMPQTETVLRQALKENVKPV-LFINKVDR  150 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCC--------CCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence            3 34678889999999999999865        67788999999989999975 67777774

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=91.61  E-value=3.6  Score=46.26  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=60.0

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC--C------cceE--EEecCceeeEEEEeCCCCC-----------h
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSST--VSSSKYRLRTSVLQAPHGD-----------L  135 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~t--v~~~r~k~Ritfie~~~~d-----------l  135 (795)
                      +.| .|+++|.++.+.. ||    ++.+++.+..  .      .+++  +..+. ...++|+..+ .-           +
T Consensus       188 ~~~-~ValvG~~NvGKS-SL----ln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~-G~~~~l~~~lie~f  259 (351)
T TIGR03156       188 DVP-TVALVGYTNAGKS-TL----FNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTV-GFIRDLPHELVAAF  259 (351)
T ss_pred             CCc-EEEEECCCCCCHH-HH----HHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecC-cccccCCHHHHHHH
Confidence            445 4889999998886 77    5555543311  1      2222  22221 2467777665 32           3


Q ss_pred             HHHHHHHhhhceEEEeeeCCCccccccccccCh--HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDS--FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~--eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+++..++-||+||+|+|++..      ..++.  ...++|..+...+.| ++.|++..|.
T Consensus       260 ~~tle~~~~ADlil~VvD~s~~------~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl  313 (351)
T TIGR03156       260 RATLEEVREADLLLHVVDASDP------DREEQIEAVEKVLEELGAEDIP-QLLVYNKIDL  313 (351)
T ss_pred             HHHHHHHHhCCEEEEEEECCCC------chHHHHHHHHHHHHHhccCCCC-EEEEEEeecC
Confidence            4566778889999999999853      11111  112444444433444 6778888885

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=91.58  E-value=2.7  Score=40.98  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=60.3

Q ss_pred             EEEecCCCccChhhHHHHHH-HhhccCCCCCcc--eEEEecCceeeEEEEeCCCCC-hHHHHHH-HhhhceEEEeeeCCC
Q 003796           82 IVLFGLSASVNLNSVREDLL-RQLSSEGTGALS--STVSSSKYRLRTSVLQAPHGD-LVGCMEM-AKVADLVAFVASASS  156 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lv-k~~~~~~~~~g~--~tv~~~r~k~Ritfie~~~~d-l~~~LD~-aKvADlVll~idas~  156 (795)
                      |+++|.++++.. +|+..+. ..+..+..+.|.  .++...  ...+.++.++-.+ +..+... .+-||.+|||+|++.
T Consensus         3 v~~~G~~~~GKT-sli~~l~~~~~~~~~pt~g~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~   79 (159)
T cd04150           3 ILMVGLDAAGKT-TILYKLKLGEIVTTIPTIGFNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   79 (159)
T ss_pred             EEEECCCCCCHH-HHHHHHhcCCCcccCCCCCcceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence            789999998886 6632221 111111111121  122222  3567888876322 4445444 688999999999984


Q ss_pred             ccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          157 FSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       157 g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      -      ..|+..-.++.++++.+.+  +.++.|.+..|.
T Consensus        80 ~------~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  113 (159)
T cd04150          80 R------ERIGEAREELQRMLNEDELRDAVLLVFANKQDL  113 (159)
T ss_pred             H------HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCC
Confidence            2      3466665666666655433  446667788775

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=91.43  E-value=0.78  Score=57.35  Aligned_cols=63  Identities=8%  Similarity=0.034  Sum_probs=51.1

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP  193 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld  193 (795)
                      ..+++||.+|- .| +..++-++.+||.+|||+||..|        +...|..+|+.+..+|+|.++.+ +.+|
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G--------v~~~t~~~~~~~~~~~~p~i~~i-NK~D  161 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--------VCVQTETVLRQALGERIRPVLTV-NKMD  161 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC--------CcccHHHHHHHHHHCCCCEEEEE-ECCc
Confidence            45789999982 24 45677788999999999999965        78889999999999999997654 5555

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=91.40  E-value=3.3  Score=39.81  Aligned_cols=106  Identities=8%  Similarity=0.034  Sum_probs=58.7

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhc--cCCCCCcc---eEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEeee
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLS--SEGTGALS---STVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVAS  153 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~--~~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~id  153 (795)
                      =|+|+|.++.+.. +|++.++....  .+..+.+.   ..+.+.....++.++..|. .++..+. ...+-||.+|+|+|
T Consensus         4 ki~i~G~~~~GKt-sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   82 (164)
T cd04145           4 KLVVVGGGGVGKS-ALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFS   82 (164)
T ss_pred             EEEEECCCCCcHH-HHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            3899999998876 66333332211  11111111   1122333345788888873 3566666 44788999999999


Q ss_pred             CCCccccccccccChHH---HHHHHHHHhcCCCceEEEeccCCc
Q 003796          154 ASSFSEESMSYYIDSFG---NQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg---~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++..      ..|+..-   .++++.....++| ++.|++..|.
T Consensus        83 ~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl  119 (164)
T cd04145          83 VTDR------GSFEEVDKFHTQILRVKDRDEFP-MILVGNKADL  119 (164)
T ss_pred             CCCH------HHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccc
Confidence            9853      2243322   2333333334566 4556788775

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04110 Rab35 Rab35 subfamily

Probab=91.38  E-value=3.9  Score=41.55  Aligned_cols=103  Identities=11%  Similarity=0.006  Sum_probs=58.3

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhce
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADL  147 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADl  147 (795)
                      +=|+|+|+++.+.. +|    +..|....      .+.|    ..++..+..+.++.++.++... ...+ --.++-||.
T Consensus         7 ~kivvvG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~   81 (199)
T cd04110           7 FKLLIIGDSGVGKS-SL----LLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG   81 (199)
T ss_pred             eEEEEECCCCCCHH-HH----HHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence            34889999998886 66    44442211      1112    2344444455688899987322 2222 224566999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhc-CCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-GLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G~P~vigVl~~Ld~  194 (795)
                      +|||+|++..      ..|+.- ...|+.+..+ +-..++.|.+..|.
T Consensus        82 iilv~D~~~~------~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl  122 (199)
T cd04110          82 VIVVYDVTNG------ESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDD  122 (199)
T ss_pred             EEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCEEEEEECccc
Confidence            9999999742      224322 2344444443 33445666777775

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04125 RabA_like RabA-like subfamily

Probab=91.33  E-value=4  Score=40.80  Aligned_cols=101  Identities=8%  Similarity=0.023  Sum_probs=57.2

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCChHH--HHHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGDLVG--CMEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~dl~~--~LD~aKvADlVl  149 (795)
                      |+|+|.++.+.. +|    +..|.....      +.|    ..++..+...-++.|+.++...-..  ....++=||.+|
T Consensus         3 i~v~G~~~vGKS-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii   77 (188)
T cd04125           3 VVIIGDYGVGKS-SL----LKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL   77 (188)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE
Confidence            789999998876 67    444432211      112    2233333334567888887333222  234566799999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~  194 (795)
                      ||+|.+..      ..|+.- .++|..++...  -+.++.|.++.|.
T Consensus        78 lv~d~~~~------~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl  117 (188)
T cd04125          78 LVYDVTDQ------ESFENL-KFWINEINRYARENVIKVIVANKSDL  117 (188)
T ss_pred             EEEECcCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCC
Confidence            99999853      234332 22444444321  1346777888885

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=91.29  E-value=3  Score=40.30  Aligned_cols=101  Identities=10%  Similarity=0.032  Sum_probs=57.9

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVl  149 (795)
                      |+|+|+++++.. +|    +..|......      .|    ..++..+...-++.++..+. ..+..+.. ..+-||.+|
T Consensus         6 i~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           6 IVLIGDSGVGKS-NL----LSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            889999998886 67    5554332211      12    23344444445788888863 12334433 347799999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      +|+|++..      ..|+. -.+.|..++.+..  +.++.|.+..|.
T Consensus        81 ~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~pi~vv~nK~Dl  120 (165)
T cd01868          81 LVYDITKK------QTFEN-VERWLKELRDHADSNIVIMLVGNKSDL  120 (165)
T ss_pred             EEEECcCH------HHHHH-HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            99999842      22322 2234444444321  236667888885

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04123 Rab21 Rab21 subfamily

Probab=91.20  E-value=3.1  Score=39.62  Aligned_cols=104  Identities=11%  Similarity=0.109  Sum_probs=54.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhh-ccCCCCC-----cceEEEecCceeeEEEEeCCCCC-hHHHHHH-HhhhceEEEeee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQL-SSEGTGA-----LSSTVSSSKYRLRTSVLQAPHGD-LVGCMEM-AKVADLVAFVAS  153 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~-~~~~~~~-----g~~tv~~~r~k~Ritfie~~~~d-l~~~LD~-aKvADlVll~id  153 (795)
                      |+|+|+++++.. +|++.++..- .......     ...++.....+..+.++.++... ...+... .+-||.+|+++|
T Consensus         3 i~i~G~~~~GKS-tli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (162)
T cd04123           3 VVLLGEGRVGKT-SLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYD   81 (162)
T ss_pred             EEEECCCCCCHH-HHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEE
Confidence            789999998875 6733333221 1111111     11123333334678889997322 3333332 466999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHh-c--CCCceEEEeccCCc
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRS-L--GLPSTAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~a-q--G~P~vigVl~~Ld~  194 (795)
                      .+.+      ..|+... .++..++. .  ++ .++.|+++.|.
T Consensus        82 ~~~~------~s~~~~~-~~~~~i~~~~~~~~-piiiv~nK~D~  117 (162)
T cd04123          82 ITDA------DSFQKVK-KWIKELKQMRGNNI-SLVIVGNKIDL  117 (162)
T ss_pred             CCCH------HHHHHHH-HHHHHHHHhCCCCC-eEEEEEECccc
Confidence            8853      2232221 22222222 2  33 36666788775

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04135 Tc10 TC10 subfamily

Probab=91.13  E-value=2.6  Score=41.18  Aligned_cols=101  Identities=8%  Similarity=0.058  Sum_probs=57.9

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC-----CC----cceEEEecCceeeEEEEeCCCCCh-HHHHH-HHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT-----GA----LSSTVSSSKYRLRTSVLQAPHGDL-VGCME-MAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~----g~~tv~~~r~k~Ritfie~~~~dl-~~~LD-~aKvADlVll  150 (795)
                      |+|+|+++.+.. +|    +..|+....     ..    ...++..+..+-+++++.++..+- ..+-+ ..+-||.+|+
T Consensus         3 i~i~G~~~~GKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   77 (174)
T cd04135           3 CVVVGDGAVGKT-CL----LMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   77 (174)
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence            789999998886 67    444432221     11    122344454455688899873222 22221 2456899999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      ++|.+..      ..|+.-...++..+...  +.| ++.|.++.|.
T Consensus        78 v~~~~~~------~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl  116 (174)
T cd04135          78 CFSVVNP------ASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDL  116 (174)
T ss_pred             EEECCCH------HHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhh
Confidence            9998742      33554444455555543  443 3556788774

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=91.03  E-value=1  Score=41.21  Aligned_cols=73  Identities=19%  Similarity=0.059  Sum_probs=40.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhcc-CC--CCC-----cceEEEecCceeeEEEEeCCCCCh-HHH--HHHHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSS-EG--TGA-----LSSTVSSSKYRLRTSVLQAPHGDL-VGC--MEMAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~-~~--~~~-----g~~tv~~~r~k~Ritfie~~~~dl-~~~--LD~aKvADlVll  150 (795)
                      |+|+|.+++++. +|++.|+..... ..  ...     +..+.....-.+.+.|.+++ ... ...  -.+.+-||.+||
T Consensus         2 I~V~G~~g~GKT-sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-g~~~~~~~~~~~~~~~d~~il   79 (119)
T PF08477_consen    2 IVVLGDSGVGKT-SLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFG-GQEEFYSQHQFFLKKADAVIL   79 (119)
T ss_dssp             EEEECSTTSSHH-HHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEES-SSHCHHCTSHHHHHHSCEEEE
T ss_pred             EEEECcCCCCHH-HHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecC-ccceecccccchhhcCcEEEE
Confidence            789999998886 673333332211 00  011     11122223234568889987 332 111  113788999999


Q ss_pred             eeeCCC
Q 003796          151 VASASS  156 (795)
Q Consensus       151 ~idas~  156 (795)
                      |+|.+.
T Consensus        80 v~D~s~   85 (119)
T PF08477_consen   80 VYDLSD   85 (119)
T ss_dssp             EEECCG
T ss_pred             EEcCCC
Confidence            999984

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01864 Rab19 Rab19 subfamily

Probab=90.95  E-value=1.8  Score=42.08  Aligned_cols=105  Identities=11%  Similarity=0.077  Sum_probs=59.9

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hc-cCCCCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEEEeee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LS-SEGTGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVAFVAS  153 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~-~~~~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVll~id  153 (795)
                      |+|+|+++++.. +|++.++.. +. .+..+.|    ..++..+..+-+++++.+|... +.. ....++-||.+|+++|
T Consensus         6 v~vvG~~~~GKT-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d   84 (165)
T cd01864           6 IILIGDSNVGKT-CVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYD   84 (165)
T ss_pred             EEEECCCCCCHH-HHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEE
Confidence            789999998886 673332221 10 1111112    2234444444588899998322 222 2345677999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~  194 (795)
                      ++..      ..|+. -...|..++.++-+  .++.|.+..|.
T Consensus        85 ~~~~------~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl  120 (165)
T cd01864          85 ITRR------SSFES-VPHWIEEVEKYGASNVVLLLIGNKCDL  120 (165)
T ss_pred             CcCH------HHHHh-HHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            9853      23432 24566666655432  25666788775

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK04213 GTP-binding protein; Provisional

Probab=90.94  E-value=8.2  Score=38.89  Aligned_cols=107  Identities=19%  Similarity=0.222  Sum_probs=60.0

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceEEEecCc-eeeEEEEeCCCC--C-----------hHH----
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSSTVSSSKY-RLRTSVLQAPHG--D-----------LVG----  137 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~~tv~~~r~-k~Ritfie~~~~--d-----------l~~----  137 (795)
                      ..-|+|+|.++.+.+ +|    +..++......   ..+|.....+ -..++++..| .  .           +.+    
T Consensus         9 ~~~i~i~G~~~~GKS-sL----in~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          9 KPEIVFVGRSNVGKS-TL----VRELTGKKVRVGKRPGVTRKPNHYDWGDFILTDLP-GFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCceeeCceEEeecceEEEeCC-ccccccccCHHHHHHHHHHHHH
Confidence            445899999998886 67    44444322111   1112211101 1257788776 4  1           111    


Q ss_pred             HH-HHHhhhceEEEeeeCCCcccccccccc-----ChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          138 CM-EMAKVADLVAFVASASSFSEESMSYYI-----DSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       138 ~L-D~aKvADlVll~idas~g~~~~~~~~f-----e~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+ ..+..+|+|++|+|++....-.  ..+     -....+++..++..|.|- +.|++..|.
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~-iiv~NK~Dl  142 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPP-IVAVNKMDK  142 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCe-EEEEECccc
Confidence            12 3567789999999997420000  001     012367788888788885 668888885

>PRK00093 GTP-binding protein Der; Reviewed

Probab=90.94  E-value=1.7  Score=49.83  Aligned_cols=98  Identities=9%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCC-CC----h----H-HHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPH-GD----L----V-GCM  139 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~------~tv~~~r~k~Ritfie~~~-~d----l----~-~~L  139 (795)
                      .|+|+|.++.+.. +|    +..+++...   ..  |.      ..+...  ...+.++.+|- .+    +    . ..+
T Consensus         3 ~I~ivG~~~vGKS-tL----~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~   75 (435)
T PRK00093          3 VVAIVGRPNVGKS-TL----FNRLTGKRDAIVADTPGVTRDRIYGEAEWL--GREFILIDTGGIEPDDDGFEKQIREQAE   75 (435)
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCCceeeCCCCCCcccceEEEEEEC--CcEEEEEECCCCCCcchhHHHHHHHHHH
Confidence            4889999998775 67    444433221   11  11      112222  25788888873 22    1    1 134


Q ss_pred             HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+..-||+||+++|++.+        +.....++...|+..|.| ++.|++..|.
T Consensus        76 ~~~~~ad~il~vvd~~~~--------~~~~~~~~~~~l~~~~~p-iilv~NK~D~  121 (435)
T PRK00093         76 LAIEEADVILFVVDGRAG--------LTPADEEIAKILRKSNKP-VILVVNKVDG  121 (435)
T ss_pred             HHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECccC
Confidence            567889999999999854        555667788888888887 5567888885

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=90.88  E-value=3.5  Score=40.00  Aligned_cols=101  Identities=9%  Similarity=0.054  Sum_probs=56.5

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCC--C----Ccc----eEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhceE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGT--G----ALS----STVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLV  148 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~--~----~g~----~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADlV  148 (795)
                      =|+|+|+++.+.. +|    +..+.....  .    .|+    .++..+....++.++.++... ...+. ..++-||.+
T Consensus         4 ki~i~G~~~vGKS-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i   78 (166)
T cd01869           4 KLLLIGDSGVGKS-CL----LLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   78 (166)
T ss_pred             EEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEE
Confidence            3789999998886 67    444432211  1    121    123333345678889887322 33332 456779999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      |+++|++..      +.|+.- .+++..++.   .++| ++.|.+..|.
T Consensus        79 i~v~d~~~~------~s~~~l-~~~~~~~~~~~~~~~~-~iiv~nK~Dl  119 (166)
T cd01869          79 IIVYDVTDQ------ESFNNV-KQWLQEIDRYASENVN-KLLVGNKCDL  119 (166)
T ss_pred             EEEEECcCH------HHHHhH-HHHHHHHHHhCCCCCc-EEEEEEChhc
Confidence            999999842      223322 234444443   3555 4556677774

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04142 RRP22 RRP22 subfamily

Probab=90.63  E-value=4  Score=41.75  Aligned_cols=101  Identities=13%  Similarity=0.059  Sum_probs=54.0

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC------ChHH----HHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG------DLVG----CMEM  141 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~------dl~~----~LD~  141 (795)
                      |+|+|.++.++. +|    +..|...+.      +.+    ..++..+..+.++.++.++.-      ....    ...+
T Consensus         3 I~ivG~~~vGKT-sL----i~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~   77 (198)
T cd04142           3 VAVLGAPGVGKT-AI----VRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG   77 (198)
T ss_pred             EEEECCCCCcHH-HH----HHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence            789999998886 67    333332211      111    112333444567888887520      1111    1223


Q ss_pred             HhhhceEEEeeeCCCccccccccccCh---HHHHHHHHHH--hcCCCceEEEeccCCc
Q 003796          142 AKVADLVAFVASASSFSEESMSYYIDS---FGNQCLSVFR--SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe~---eg~e~L~~l~--aqG~P~vigVl~~Ld~  194 (795)
                      .+-||.+|||+|++..      ..|+.   +..++++...  ..+.| ++.|.+..|.
T Consensus        78 ~~~ad~iilv~D~~~~------~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl  128 (198)
T cd04142          78 LRNSRAFILVYDICSP------DSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQ  128 (198)
T ss_pred             hccCCEEEEEEECCCH------HHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECccc
Confidence            5789999999999853      22332   2223333321  24444 4555677775

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=90.59  E-value=3.7  Score=39.25  Aligned_cols=101  Identities=12%  Similarity=0.109  Sum_probs=57.9

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll  150 (795)
                      |+++|+++.+.. +|    ++.++....      +.+.   ..+.......++.++..+. .+...+. .+.+.+|.+++
T Consensus         3 i~~~G~~~~GKT-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   77 (164)
T cd04139           3 VIVVGAGGVGKS-AL----TLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL   77 (164)
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence            789999998876 67    443332111      1111   1122333456788887763 1333333 36688999999


Q ss_pred             eeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++|.+..      ..|+   .+...++.+...+++| ++.|++..|.
T Consensus        78 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~  117 (164)
T cd04139          78 VFSITDM------ESFTATAEFREQILRVKDDDNVP-LLLVGNKCDL  117 (164)
T ss_pred             EEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccc
Confidence            9998742      2233   3444444444446777 5666777775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=90.51  E-value=1.5  Score=44.02  Aligned_cols=106  Identities=13%  Similarity=0.052  Sum_probs=62.8

Q ss_pred             EEEEEecCCCccChhhHHHHHHH-hhccCCCCCcce--EEEecCceeeEEEEeCCCC-ChHHHHHH-HhhhceEEEeeeC
Q 003796           80 RVIVLFGLSASVNLNSVREDLLR-QLSSEGTGALSS--TVSSSKYRLRTSVLQAPHG-DLVGCMEM-AKVADLVAFVASA  154 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk-~~~~~~~~~g~~--tv~~~r~k~Ritfie~~~~-dl~~~LD~-aKvADlVll~ida  154 (795)
                      +=|+++|+++.+.. +|+..+.. .+..+..+.|..  ++...  +-.+.++.++-. .+..+.+. .+-||.+|+|+|+
T Consensus        18 ~kv~lvG~~~vGKT-sli~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~   94 (182)
T PTZ00133         18 VRILMVGLDAAGKT-TILYKLKLGEVVTTIPTIGFNVETVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDS   94 (182)
T ss_pred             cEEEEEcCCCCCHH-HHHHHHhcCCccccCCccccceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence            34899999998886 66333221 111111111221  12222  357888888732 24444443 6889999999999


Q ss_pred             CCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          155 SSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       155 s~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      +.-      ..|+..-.++.+.++.+-+  +.++.|.++.|.
T Consensus        95 t~~------~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl  130 (182)
T PTZ00133         95 NDR------ERIGDAREELERMLSEDELRDAVLLVFANKQDL  130 (182)
T ss_pred             CCH------HHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence            742      3466666677777766433  456777888885

>PRK09866 hypothetical protein; Provisional

Probab=90.51  E-value=1.6  Score=52.44  Aligned_cols=93  Identities=11%  Similarity=0.114  Sum_probs=63.6

Q ss_pred             eeEEEEeCCC-----CC-hH-HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC-CceEEEeccCCc
Q 003796          123 LRTSVLQAPH-----GD-LV-GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL-PSTAVLIRDLPT  194 (795)
Q Consensus       123 ~Ritfie~~~-----~d-l~-~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~-P~vigVl~~Ld~  194 (795)
                      ..+.|+--|-     .. +. .|.++.+=||+||||+|+..+        +...-.++++.|+..|- ..++.|++.+|.
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~--------~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl  301 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL--------KSISDEEVREAILAVGQSVPLYVLVNKFDQ  301 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC--------CChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence            4566766542     12 33 488999999999999999853        45555788999988884 247888898886


Q ss_pred             chhh-----hHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          195 DLKK-----RKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       195 ~~Kk-----~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                        .+     ...+++.++..+..+...-+++|++|.
T Consensus       302 --~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSA  335 (741)
T PRK09866        302 --QDRNSDDADQVRALISGTLMKGCITPQQIFPVSS  335 (741)
T ss_pred             --CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence              22     223455555444444445789999994

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=90.40  E-value=3.7  Score=37.52  Aligned_cols=98  Identities=13%  Similarity=0.083  Sum_probs=54.5

Q ss_pred             EecCCCccChhhHHHHHHHhhccCCC--CC--------cceEEEecCceeeEEEEeCCCCCh---HHHHHHHhhhceEEE
Q 003796           84 LFGLSASVNLNSVREDLLRQLSSEGT--GA--------LSSTVSSSKYRLRTSVLQAPHGDL---VGCMEMAKVADLVAF  150 (795)
Q Consensus        84 Vvg~~~~~~~~sl~~~lvk~~~~~~~--~~--------g~~tv~~~r~k~Ritfie~~~~dl---~~~LD~aKvADlVll  150 (795)
                      |+|+++++.. +|    ++.++....  ..        ..+.+........++++.+| ...   .......+-+|.+++
T Consensus         1 iiG~~~~GKS-tl----~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~-g~~~~~~~~~~~~~~~~~~i~   74 (157)
T cd00882           1 VVGDSGVGKT-SL----LNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTA-GQERFRSLRRLYYRGADGIIL   74 (157)
T ss_pred             CCCcCCCcHH-HH----HHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecC-ChHHHHhHHHHHhcCCCEEEE
Confidence            5788888775 67    444433222  11        12222222235778899987 322   122346788999999


Q ss_pred             eeeCCCccccccccccChHHH---HHHHHHHhcCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGN---QCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~---e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++|++.+      ..++....   ..+......+.| ++.|+++.|.
T Consensus        75 v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~  114 (157)
T cd00882          75 VYDVTDR------ESFENVKEWLLLILINKEGENIP-IILVGNKIDL  114 (157)
T ss_pred             EEECcCH------HHHHHHHHHHHHHHHhhccCCCc-EEEEEecccc
Confidence            9999954      12222222   233444444544 5667788775

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd00157 Rho Rho (Ras homology) family

Probab=90.05  E-value=3.9  Score=39.60  Aligned_cols=103  Identities=12%  Similarity=0.052  Sum_probs=60.1

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCC-----CC----cceEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA----LSSTVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVA  149 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~----g~~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVl  149 (795)
                      -|+|+|.++++.. +|    ++.|+....     ..    -..++..+.....++|+.+|... ...+.. ..+-||.+|
T Consensus         2 ki~i~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i   76 (171)
T cd00157           2 KIVVVGDGAVGKT-CL----LISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFL   76 (171)
T ss_pred             EEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEE
Confidence            3789999998886 77    444433321     11    12223333345678899887322 112211 236699999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCC-CceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL-PSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~-P~vigVl~~Ld~  194 (795)
                      +++|++..      ..|+....+++..+..... ..++.|+++.|.
T Consensus        77 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  116 (171)
T cd00157          77 ICFSVDSP------SSFENVKTKWIPEIRHYCPNVPIILVGTKIDL  116 (171)
T ss_pred             EEEECCCH------HHHHHHHHHHHHHHHhhCCCCCEEEEEccHHh
Confidence            99998742      3355555566776665542 335666777774

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=89.96  E-value=5.6  Score=40.36  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=77.2

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEec-----CceeeEEEEeCCC-CCh-------H-HHHHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSS-----KYRLRTSVLQAPH-GDL-------V-GCMEMA  142 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~-----r~k~Ritfie~~~-~dl-------~-~~LD~a  142 (795)
                      |+++|.++++.. ++++.|+    +.....     .+.|..+.     -..+++++|..|- .|.       . .+..++
T Consensus         3 i~lvG~~g~GKS-sl~N~il----g~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~   77 (196)
T cd01852           3 LVLVGKTGAGKS-ATGNTIL----GREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCL   77 (196)
T ss_pred             EEEECCCCCCHH-HHHHHhh----CCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence            889999998875 6644434    222110     11221111     0136899999873 122       1 233333


Q ss_pred             hh----hceEEEeeeCCCccccccccccChHHHHHHHHHHhc-C---CCceEEEeccCCc-chhhhHH----HHHHHHhh
Q 003796          143 KV----ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-G---LPSTAVLIRDLPT-DLKKRKD----LKKMCISS  209 (795)
Q Consensus       143 Kv----ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G---~P~vigVl~~Ld~-~~Kk~~~----~kK~lk~~  209 (795)
                      ..    +|+||||+++..         |..+-.++|..|+.. |   +..+|.|+|+-|. ......+    ..+.|+..
T Consensus        78 ~~~~~g~~~illVi~~~~---------~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l  148 (196)
T cd01852          78 SLSAPGPHAFLLVVPLGR---------FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRL  148 (196)
T ss_pred             HhcCCCCEEEEEEEECCC---------cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHH
Confidence            32    699999999873         555556667766654 3   5678888998774 1011111    11222222


Q ss_pred             cccccCCCCeeEEeC-------CHHHHHHHHHHHhhcccc
Q 003796          210 LTSEFPEDCKFYAAD-------TKDELHKFLWLFKEQRLT  242 (795)
Q Consensus       210 f~~ef~~~~Klf~l~-------~~~E~~nL~R~Is~~k~r  242 (795)
                      +..  + +...+.++       ....+..|+..|-.|-..
T Consensus       149 ~~~--c-~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         149 LEK--C-GGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             HHH--h-CCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            222  1 23333333       356788888888776653

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=89.83  E-value=4.1  Score=39.09  Aligned_cols=101  Identities=12%  Similarity=0.084  Sum_probs=57.7

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC------CC----cceEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GA----LSSTVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~----g~~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADlVl  149 (795)
                      |+|+|.++.+.. +|    +..|+....      +.    +...+.......++.|+.++-.+ ...+. ...+-||.+|
T Consensus         3 i~~vG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (168)
T cd04119           3 VISMGNSGVGKS-CI----IKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVL   77 (168)
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEE
Confidence            789999998886 67    444433221      11    22334444456788899987322 23333 2457799999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcC-------CCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG-------LPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-------~P~vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+. -.+.+..++...       -+.++.|.+..|.
T Consensus        78 lv~D~~~~------~s~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  122 (168)
T cd04119          78 LVYDVTDR------QSFEA-LDSWLKEMKQEGGPHGNMENIVVVVCANKIDL  122 (168)
T ss_pred             EEEECCCH------HHHHh-HHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence            99998842      22332 223344333332       1456777777774

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=89.80  E-value=3.6  Score=45.96  Aligned_cols=98  Identities=9%  Similarity=0.146  Sum_probs=56.0

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCC-------C-cceE--EEecCceeeEEEEeCCCCC---------h-HHHHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-------A-LSST--VSSSKYRLRTSVLQAPHGD---------L-VGCMEM  141 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-------~-g~~t--v~~~r~k~Ritfie~~~~d---------l-~~~LD~  141 (795)
                      |++||+|..+.+ +|    +..++.....       . .|..  +... ..++|+++..| .-         | ...|..
T Consensus       161 VglVG~PNaGKS-TL----ln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~P-Gli~ga~~~~gLg~~flrh  233 (335)
T PRK12299        161 VGLVGLPNAGKS-TL----ISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIP-GLIEGASEGAGLGHRFLKH  233 (335)
T ss_pred             EEEEcCCCCCHH-HH----HHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCC-CccCCCCccccHHHHHHHH
Confidence            899999998875 77    5555543211       1 2221  1121 13578888887 32         2 245566


Q ss_pred             HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCc
Q 003796          142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPT  194 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~  194 (795)
                      ..-||++|+|+|++..      ..++.. ..+++.|+..     .. .++.|++..|.
T Consensus       234 ie~a~vlI~ViD~s~~------~s~e~~-~~~~~EL~~~~~~L~~k-p~IIV~NKiDL  283 (335)
T PRK12299        234 IERTRLLLHLVDIEAV------DPVEDY-KTIRNELEKYSPELADK-PRILVLNKIDL  283 (335)
T ss_pred             hhhcCEEEEEEcCCCC------CCHHHH-HHHHHHHHHhhhhcccC-CeEEEEECccc
Confidence            6679999999999842      112111 2333444432     33 35667888775

>PRK11058 GTPase HflX; Provisional

Probab=89.68  E-value=4.8  Score=46.47  Aligned_cols=105  Identities=12%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCC--C------cceE--EEecCceeeEEEEeCCC--CC--------h
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSST--VSSSKYRLRTSVLQAPH--GD--------L  135 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~t--v~~~r~k~Ritfie~~~--~d--------l  135 (795)
                      .+.|. |+|+|.++.+.+ ||    ++.|+..+..  .      .+.+  +..+. ...+.++..+-  ++        +
T Consensus       195 ~~~p~-ValVG~~NaGKS-SL----lN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f  267 (426)
T PRK11058        195 ADVPT-VSLVGYTNAGKS-TL----FNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAF  267 (426)
T ss_pred             cCCCE-EEEECCCCCCHH-HH----HHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHH
Confidence            35566 789999998886 77    5555443211  1      2221  22222 12555655541  11        4


Q ss_pred             HHHHHHHhhhceEEEeeeCCCccccccccccCh--HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDS--FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~--eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+++..++-||++|+|+|++..      ..++.  ...++|..+...+.| ++.|++..|.
T Consensus       268 ~~tl~~~~~ADlIL~VvDaS~~------~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL  321 (426)
T PRK11058        268 KATLQETRQATLLLHVVDAADV------RVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDM  321 (426)
T ss_pred             HHHHHHhhcCCEEEEEEeCCCc------cHHHHHHHHHHHHHHhccCCCC-EEEEEEcccC
Confidence            5566778889999999999853      11111  123556665555555 5678888885

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=89.65  E-value=5.7  Score=38.10  Aligned_cols=99  Identities=14%  Similarity=0.165  Sum_probs=58.1

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA  152 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g--~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~i  152 (795)
                      |+|+|+++++.. +|    +..++......     |  ..++...  ...+.++.+|-. ...++.. +.+-||.+|+|+
T Consensus         2 i~iiG~~~~GKs-sl----i~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   74 (158)
T cd00878           2 ILILGLDGAGKT-TI----LYKLKLGEVVTTIPTIGFNVETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV   74 (158)
T ss_pred             EEEEcCCCCCHH-HH----HHHHhcCCCCCCCCCcCcceEEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence            789999998886 67    44443322111     2  2222222  357888888731 2333433 448899999999


Q ss_pred             eCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          153 SASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      |++.+      ..|+..-..+..+++.   .+.| ++.|+++.|.
T Consensus        75 D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~  112 (158)
T cd00878          75 DSSDR------ERIEEAKEELHKLLNEEELKGVP-LLIFANKQDL  112 (158)
T ss_pred             ECCCH------HHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCC
Confidence            99853      2355444445555553   3443 4555888885

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=89.58  E-value=4.1  Score=41.83  Aligned_cols=102  Identities=15%  Similarity=0.184  Sum_probs=55.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCC-C------cceEEEec--CceeeEEEEeCCC-CChHH-HHHHHhhh-ceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-A------LSSTVSSS--KYRLRTSVLQAPH-GDLVG-CMEMAKVA-DLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-~------g~~tv~~~--r~k~Ritfie~~~-~dl~~-~LD~aKvA-DlVl  149 (795)
                      |+++|+++++.. +|    +..|+..... .      ...++...  ....++.++.+|- ..+.. +....+-+ +.||
T Consensus         3 vll~G~~~sGKT-sL----~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV   77 (203)
T cd04105           3 VLLLGPSDSGKT-AL----FTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIV   77 (203)
T ss_pred             EEEEcCCCCCHH-HH----HHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEE
Confidence            789999998887 66    4444332211 1      11122211  2245788898873 23433 34556677 9999


Q ss_pred             EeeeCCCccccccccccCh---HHHHHHHHHHh--cCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDS---FGNQCLSVFRS--LGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~---eg~e~L~~l~a--qG~P~vigVl~~Ld~  194 (795)
                      +|+|++...     ..+..   +-+++|+.++.  .|. .++.|.+..|.
T Consensus        78 ~VvD~~~~~-----~~~~~~~~~l~~il~~~~~~~~~~-pvliv~NK~Dl  121 (203)
T cd04105          78 FVVDSATFQ-----KNLKDVAEFLYDILTDLEKVKNKI-PVLIACNKQDL  121 (203)
T ss_pred             EEEECccch-----hHHHHHHHHHHHHHHHHhhccCCC-CEEEEecchhh
Confidence            999998530     01222   22334444333  254 45566777664

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04155 Arl3 Arl3 subfamily

Probab=89.53  E-value=6.6  Score=38.24  Aligned_cols=101  Identities=19%  Similarity=0.283  Sum_probs=59.8

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcce--EEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALSS--TVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLV  148 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~~--tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlV  148 (795)
                      ++-|+|+|++++++. +|    ++.+++...     +.|..  .+...  ...+.++..+ ..  +..+ ....+-||.+
T Consensus        14 ~~~v~i~G~~g~GKS-tL----l~~l~~~~~~~~~~t~g~~~~~i~~~--~~~~~~~D~~-G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          14 EPRILILGLDNAGKT-TI----LKQLASEDISHITPTQGFNIKTVQSD--GFKLNVWDIG-GQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             ccEEEEEccCCCCHH-HH----HHHHhcCCCcccCCCCCcceEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhcCCCEE
Confidence            566999999999886 67    555544321     12311  22222  3577888876 43  3333 3445789999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~  194 (795)
                      |+++|++..      ..|+.....+...++   ..+.| ++.|++..|.
T Consensus        86 i~v~D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~  127 (173)
T cd04155          86 IYVIDSADK------KRLEEAGAELVELLEEEKLAGVP-VLVFANKQDL  127 (173)
T ss_pred             EEEEeCCCH------HHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCC
Confidence            999999842      224443444444433   34555 6667787775

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=89.50  E-value=2.6  Score=39.86  Aligned_cols=96  Identities=17%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----c--eEEEecCceeeEEEEeCCC-CCh---------HHHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----S--STVSSSKYRLRTSVLQAPH-GDL---------VGCM  139 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~--~tv~~~r~k~Ritfie~~~-~dl---------~~~L  139 (795)
                      .|+++|+++++.. ++    +..++....   ..  +    .  ..+...  ..+++++..|- .+.         ..+.
T Consensus         3 ~i~l~G~~~~GKs-tl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~   75 (157)
T cd04164           3 KVVIVGKPNVGKS-SL----LNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAR   75 (157)
T ss_pred             EEEEECCCCCCHH-HH----HHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHH
Confidence            5899999998886 67    444443321   01  1    1  112222  35788888872 122         2345


Q ss_pred             HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ...+-||++++++|++..           ++.+.+..++...-..++.|+++.|.
T Consensus        76 ~~~~~~~~~v~v~d~~~~-----------~~~~~~~~~~~~~~~~vi~v~nK~D~  119 (157)
T cd04164          76 EAIEEADLVLFVIDASRG-----------LDEEDLEILELPADKPIIVVLNKSDL  119 (157)
T ss_pred             HHHhhCCEEEEEEECCCC-----------CCHHHHHHHHhhcCCCEEEEEEchhc
Confidence            667789999999999842           12333334443444667888998885

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=89.24  E-value=5  Score=40.86  Aligned_cols=132  Identities=14%  Similarity=0.175  Sum_probs=72.6

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC---CC---cc--eEEEecCc----eeeEEEEeCCC-CC----hHHHHHH
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA---LS--STVSSSKY----RLRTSVLQAPH-GD----LVGCMEM  141 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~---g~--~tv~~~r~----k~Ritfie~~~-~d----l~~~LD~  141 (795)
                      |.-|+|+|.++.+.. +|    ++.+++...   ..   |.  +|.....+    ...++++..|- ++    ....+..
T Consensus         1 ~~kI~i~G~~g~GKS-SL----in~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~   75 (197)
T cd04104           1 PLNIAVTGESGAGKS-SF----INALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEE   75 (197)
T ss_pred             CeEEEEECCCCCCHH-HH----HHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHH
Confidence            556899999998886 77    444433221   11   21  12111111    13678888762 11    2333333


Q ss_pred             H--hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc---chh-------hhHHHHHHHHhh
Q 003796          142 A--KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT---DLK-------KRKDLKKMCISS  209 (795)
Q Consensus       142 a--KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~---~~K-------k~~~~kK~lk~~  209 (795)
                      .  .-+|++|++.+..          |...-..++..|+..|. .++.|++..|.   +..       ++.++...++.+
T Consensus        76 ~~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~~~-~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~  144 (197)
T cd04104          76 MKFSEYDFFIIISSTR----------FSSNDVKLAKAIQCMGK-KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN  144 (197)
T ss_pred             hCccCcCEEEEEeCCC----------CCHHHHHHHHHHHHhCC-CEEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence            2  2368888886655          55556777888888875 45778887774   110       123444444544


Q ss_pred             ccccc----CCCCeeEEeCCH
Q 003796          210 LTSEF----PEDCKFYAADTK  226 (795)
Q Consensus       210 f~~ef----~~~~Klf~l~~~  226 (795)
                      +...+    .....+|-+|..
T Consensus       145 ~~~~~~~~~~~~p~v~~vS~~  165 (197)
T cd04104         145 CLENLQEAGVSEPPVFLVSNF  165 (197)
T ss_pred             HHHHHHHcCCCCCCEEEEeCC
Confidence            44433    234577777764

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04154 Arl2 Arl2 subfamily

Probab=88.91  E-value=9.7  Score=37.37  Aligned_cols=101  Identities=14%  Similarity=0.187  Sum_probs=58.9

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEEE
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVAF  150 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g--~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVll  150 (795)
                      .-|+|+|+++++.. +|    +..|.......     |  ..++...  ..++.++..+-.. +.++ -....-||.+|+
T Consensus        15 ~kv~ivG~~~~GKT-sL----~~~l~~~~~~~~~~t~g~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          15 MRILILGLDNAGKT-TI----LKKLLGEDIDTISPTLGFQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             cEEEEECCCCCCHH-HH----HHHHccCCCCCcCCccccceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            45779999998886 67    44443222211     3  1223333  3578889887322 3333 334667999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~  194 (795)
                      ++|++..      ..|+.....+..+++   ..+ +.++.|+++.|.
T Consensus        88 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl  127 (173)
T cd04154          88 VVDSSDR------LRLDDCKRELKELLQEERLAG-ATLLILANKQDL  127 (173)
T ss_pred             EEECCCH------HHHHHHHHHHHHHHhChhhcC-CCEEEEEECccc
Confidence            9999853      234443334444443   245 446677888885

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01892 Miro2 Miro2 subfamily

Probab=88.90  E-value=2.6  Score=41.62  Aligned_cols=101  Identities=11%  Similarity=0.075  Sum_probs=55.0

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC-------Ccc----eEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhce
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG-------ALS----STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADL  147 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-------~g~----~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADl  147 (795)
                      =|+|+|.++.+.. +|    +..|......       .|.    .++........+.+.++.... ...+-. ..+-||+
T Consensus         6 kv~~vG~~~vGKT-sl----i~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~   80 (169)
T cd01892           6 LCFVLGAKGSGKS-AL----LRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV   80 (169)
T ss_pred             EEEEECCCCCcHH-HH----HHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence            3899999998886 67    4444332211       121    233344444566666665221 222222 2477999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhc-CCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-GLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G~P~vigVl~~Ld~  194 (795)
                      +|||+|++..      ..|+. -.+++..++.. +.| ++.|++..|.
T Consensus        81 ~llv~d~~~~------~s~~~-~~~~~~~~~~~~~~p-~iiv~NK~Dl  120 (169)
T cd01892          81 ACLVYDSSDP------KSFSY-CAEVYKKYFMLGEIP-CLFVAAKADL  120 (169)
T ss_pred             EEEEEeCCCH------HHHHH-HHHHHHHhccCCCCe-EEEEEEcccc
Confidence            9999999742      12321 12444433222 444 6777888885

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=88.88  E-value=2.6  Score=51.87  Aligned_cols=101  Identities=11%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcceE----EEecCceeeEEEEeCCCCC-----h-----HHHHH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALSST----VSSSKYRLRTSVLQAPHGD-----L-----VGCME  140 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~~t----v~~~r~k~Ritfie~~~~d-----l-----~~~LD  140 (795)
                      ..|+|+|.++.+.. +|    ++.+++...     ..|...    ....--...+.|+.++--+     +     ..+..
T Consensus       276 ~~V~IvG~~nvGKS-SL----~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        276 GVVAIVGRPNVGKS-TL----VNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             cEEEEECCCCCCHH-HH----HHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            34999999998875 77    454443221     112211    1111012467888776211     1     22345


Q ss_pred             HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++.-||++|||+|++.|        +...-.++++.|+.+|.|-+ .|++..|.
T Consensus       351 ~~~~aD~iL~VvDa~~~--------~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~  395 (712)
T PRK09518        351 AVSLADAVVFVVDGQVG--------LTSTDERIVRMLRRAGKPVV-LAVNKIDD  395 (712)
T ss_pred             HHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence            67889999999999854        55566678888888998655 46777775

>cd01893 Miro1 Miro1 subfamily

Probab=88.79  E-value=9.7  Score=37.10  Aligned_cols=106  Identities=15%  Similarity=0.164  Sum_probs=56.6

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hccCCCC-CcceEEE--ecCceeeEEEEeCCCCC--hHHHHHHHhhhceEEEeeeCC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LSSEGTG-ALSSTVS--SSKYRLRTSVLQAPHGD--LVGCMEMAKVADLVAFVASAS  155 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~-~g~~tv~--~~r~k~Ritfie~~~~d--l~~~LD~aKvADlVll~idas  155 (795)
                      |+|+|.++.+.. +|++.++.. +...... ...+++.  ....+.++.++.++-..  ........+-||++||++|++
T Consensus         3 v~ivG~~~vGKT-sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~   81 (166)
T cd01893           3 IVLIGDEGVGKS-SLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVD   81 (166)
T ss_pred             EEEECCCCCCHH-HHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECC
Confidence            789999998875 673333321 1110001 1223332  22235677788776221  223455568899999999987


Q ss_pred             CccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796          156 SFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT  194 (795)
Q Consensus       156 ~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~  194 (795)
                      ..      ..|+.--...+..++.++ -..++.|+++.|.
T Consensus        82 ~~------~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl  115 (166)
T cd01893          82 RP------STLERIRTKWLPLIRRLGVKVPIILVGNKSDL  115 (166)
T ss_pred             CH------HHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence            43      334442222344444432 2345667788775

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=88.63  E-value=3  Score=40.70  Aligned_cols=102  Identities=8%  Similarity=0.019  Sum_probs=57.8

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCC--C----CCc----ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhce
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEG--T----GAL----SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADL  147 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~--~----~~g----~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADl  147 (795)
                      +=|+|+|+++.+.. +|    +..|+...  .    +.|    ..++..+...-+++++.++. .....+. ..++-||.
T Consensus         4 ~ki~vvG~~~~GKS-sl----~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~   78 (167)
T cd01867           4 FKLLLIGDSGVGKS-CL----LLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   78 (167)
T ss_pred             eEEEEECCCCCCHH-HH----HHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCE
Confidence            34899999998886 67    44443322  1    112    22333343456788899873 2234443 34678999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      +|+++|++.+      ..|+. -.+.+..++.+   +.|-+ .|.+..|.
T Consensus        79 ~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p~i-iv~nK~Dl  120 (167)
T cd01867          79 IILVYDITDE------KSFEN-IRNWMRNIEEHASEDVERM-LVGNKCDM  120 (167)
T ss_pred             EEEEEECcCH------HHHHh-HHHHHHHHHHhCCCCCcEE-EEEECccc
Confidence            9999998753      22432 22344444433   44444 44566664

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04111 Rab39 Rab39 subfamily

Probab=88.62  E-value=5.8  Score=40.91  Aligned_cols=102  Identities=8%  Similarity=0.036  Sum_probs=55.2

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC------cc----eEEEe-cCceeeEEEEeCCCCC-hHHHH-HHHhhhceE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------LS----STVSS-SKYRLRTSVLQAPHGD-LVGCM-EMAKVADLV  148 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g~----~tv~~-~r~k~Ritfie~~~~d-l~~~L-D~aKvADlV  148 (795)
                      |+|+|.++.+.. +|    +..|.......      |.    .++.. +....++.++.++... ...+. ...+-||.+
T Consensus         5 IvvvG~~~vGKT-sL----i~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i   79 (211)
T cd04111           5 LIVIGDSTVGKS-SL----LKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGV   79 (211)
T ss_pred             EEEECCCCCCHH-HH----HHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEE
Confidence            889999998876 67    44443322111      21    12222 2334578888876322 22322 456789999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~  194 (795)
                      |+|+|.+..      ..|+.-...+-.+++..+  -+.++.|.++.|.
T Consensus        80 ilv~D~~~~------~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl  121 (211)
T cd04111          80 LLVFDITNR------ESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL  121 (211)
T ss_pred             EEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence            999998742      235443332222333222  2334556677775

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=88.58  E-value=3.7  Score=40.32  Aligned_cols=101  Identities=18%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCCcceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEeee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGALSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVAS  153 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~id  153 (795)
                      |+|+|+++.++. +|    +..|....      .+.|...+.....+.++.++.++- ..+..+. ...+-||.+|+|+|
T Consensus         2 i~ivG~~~vGKT-sl----i~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           2 ILVLGLDGAGKT-SL----LHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            789999998876 66    44443221      111433333333457888998762 2344433 35788999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHh-cCCCceEEEeccCCc
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRS-LGLPSTAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~a-qG~P~vigVl~~Ld~  194 (795)
                      ++..      ..|+..-..+..+++. .+.| ++.|.+..|.
T Consensus        77 ~t~~------~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl  111 (164)
T cd04162          77 SADS------ERLPLARQELHQLLQHPPDLP-LVVLANKQDL  111 (164)
T ss_pred             CCCH------HHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCC
Confidence            8842      2233322233334332 3544 5567787775

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=88.18  E-value=2.7  Score=41.72  Aligned_cols=106  Identities=13%  Similarity=0.043  Sum_probs=59.8

Q ss_pred             EEEEEecCCCccChhhHHHHHH-HhhccCCCCCcc--eEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEEEeeeC
Q 003796           80 RVIVLFGLSASVNLNSVREDLL-RQLSSEGTGALS--STVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVAFVASA  154 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lv-k~~~~~~~~~g~--~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVll~ida  154 (795)
                      .-|+++|+++++.. +|+..++ ..+..+..+.|.  .++..  ...++.|+.++- .....+... .+-||.+|+|+|+
T Consensus        14 ~ki~l~G~~~~GKT-sL~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~   90 (175)
T smart00177       14 MRILMVGLDAAGKT-TILYKLKLGESVTTIPTIGFNVETVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS   90 (175)
T ss_pred             cEEEEEcCCCCCHH-HHHHHHhcCCCCCcCCccccceEEEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence            45899999998886 6633221 111111111121  12222  235677888873 234455444 5889999999999


Q ss_pred             CCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          155 SSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       155 s~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      +.-      ..|+..-..+..+++.+.+  +.++.|++..|.
T Consensus        91 t~~------~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl  126 (175)
T smart00177       91 NDR------DRIDEAREELHRMLNEDELRDAVILVFANKQDL  126 (175)
T ss_pred             CCH------HHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence            842      2355544455555554433  235667888885

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04120 Rab12 Rab12 subfamily

Probab=88.06  E-value=5.9  Score=40.80  Aligned_cols=101  Identities=11%  Similarity=0.158  Sum_probs=57.6

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLV  148 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlV  148 (795)
                      -|+|+|.++.+++ +|    +..|....      .+.|    ..++..+...-.+.++..+-. .+.++. ...+-||.+
T Consensus         2 ~vvvlG~~gVGKT-Sl----i~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~i   76 (202)
T cd04120           2 QVIIIGSRGVGKT-SL----MRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI   76 (202)
T ss_pred             EEEEECcCCCCHH-HH----HHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEE
Confidence            3789999998886 66    44443211      1112    123444444567778877532 233433 346789999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      |||+|.+..      ..|+.- .+.+..++.+   ++| ++.|.+..|.
T Consensus        77 IlVfDvtd~------~Sf~~l-~~w~~~i~~~~~~~~p-iilVgNK~DL  117 (202)
T cd04120          77 ILVYDITKK------ETFDDL-PKWMKMIDKYASEDAE-LLLVGNKLDC  117 (202)
T ss_pred             EEEEECcCH------HHHHHH-HHHHHHHHHhCCCCCc-EEEEEECccc
Confidence            999998852      234432 2344455443   444 4556777775

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=88.01  E-value=6  Score=44.21  Aligned_cols=80  Identities=13%  Similarity=0.073  Sum_probs=52.1

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------------------------c-ceEEEec-------
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------------------------L-SSTVSSS-------  119 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------------------------g-~~tv~~~-------  119 (795)
                      .+.|.+|+|.|+++++++ +|+..|+..+...+...                            . .+.+.+.       
T Consensus        53 ~~~~~~igi~G~~GaGKS-Tl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~  131 (332)
T PRK09435         53 TGNALRIGITGVPGVGKS-TFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLG  131 (332)
T ss_pred             CCCcEEEEEECCCCCCHH-HHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCccccc
Confidence            467999999999998775 56666677775432110                            0 1122220       


Q ss_pred             --------------CceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796          120 --------------KYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF  157 (795)
Q Consensus       120 --------------r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g  157 (795)
                                    ...-.+.||+-. ..-.+-.+++..||+||++++...|
T Consensus       132 ~~a~~~~~~~~~~~~~g~d~viieT~-Gv~qs~~~i~~~aD~vlvv~~p~~g  182 (332)
T PRK09435        132 GVARKTRETMLLCEAAGYDVILVETV-GVGQSETAVAGMVDFFLLLQLPGAG  182 (332)
T ss_pred             chHHHHHHHHHHHhccCCCEEEEECC-CCccchhHHHHhCCEEEEEecCCch
Confidence                          112366788876 5557778899999999999875443

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=87.84  E-value=6.1  Score=38.72  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=57.3

Q ss_pred             EEEEecCCCccChhhHHHHHHHhh-c-cCCCCCc----ceEEEecCceeeEEEEeCCCCC-hH-HHHHH-HhhhceEEEe
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQL-S-SEGTGAL----SSTVSSSKYRLRTSVLQAPHGD-LV-GCMEM-AKVADLVAFV  151 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~-~-~~~~~~g----~~tv~~~r~k~Ritfie~~~~d-l~-~~LD~-aKvADlVll~  151 (795)
                      -|+|+|+++.+.. +|++.++..- . .+..+.|    ..++..+....++.++.++..+ +. .++.. .+-||.+|++
T Consensus         4 ki~vvG~~~vGKT-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v   82 (170)
T cd04115           4 KIIVIGDSNVGKT-CLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFV   82 (170)
T ss_pred             EEEEECCCCCCHH-HHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEE
Confidence            3899999998886 6733332211 0 0111111    1233344445688888886322 32 34443 5679999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT  194 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~  194 (795)
                      +|++..      ..|+.. ..++..+..+    ++| ++.|.+..|.
T Consensus        83 ~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~p-~iiv~nK~Dl  121 (170)
T cd04115          83 YDVTNM------ASFHSL-PSWIEECEQHSLPNEVP-RILVGNKCDL  121 (170)
T ss_pred             EECCCH------HHHHhH-HHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            999853      223322 2344444443    344 4556777775

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04116 Rab9 Rab9 subfamily

Probab=87.82  E-value=5.4  Score=38.83  Aligned_cols=106  Identities=6%  Similarity=0.017  Sum_probs=58.2

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCC-C----C-c----ceEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhce
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT-G----A-L----SSTVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADL  147 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~----~-g----~~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADl  147 (795)
                      .=|+|+|.++++.. +|    +..|..... .    . |    ..++.....+-++.++.++... ...+. ...+-||.
T Consensus         6 ~ki~vvG~~~~GKT-sl----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   80 (170)
T cd04116           6 LKVILLGDGGVGKS-SL----MNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDC   80 (170)
T ss_pred             EEEEEECCCCCCHH-HH----HHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence            45899999998876 67    444432111 1    1 2    1233334445677778876322 22222 35678999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      +|+++|.+..   +....+..+-.++++.+..   .++|-++ |++..|.
T Consensus        81 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~piil-v~nK~Dl  126 (170)
T cd04116          81 CLLTFAVDDS---QSFQNLSNWKKEFIYYADVKEPESFPFVV-LGNKNDI  126 (170)
T ss_pred             EEEEEECCCH---HHHHhHHHHHHHHHHhcccccCCCCcEEE-EEECccc
Confidence            9999998743   1111233455555555432   3455444 5677775

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=87.67  E-value=7.7  Score=38.32  Aligned_cols=105  Identities=6%  Similarity=-0.045  Sum_probs=58.3

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hc-cCCCCCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEEeee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LS-SEGTGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAFVAS  153 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~-~~~~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll~id  153 (795)
                      |+|+|.++.+.. +|++.++.. +. .+..+.|    ..++.......++.|+.++.. ....+ -...+=||++|||+|
T Consensus         3 i~ivG~~~vGKT-sli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           3 VIVVGDLSVGKT-CLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEECCCCCCHH-HHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            779999998886 673332321 11 1111112    122333334567888888621 22223 233677999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHhcCCC---ceEEEeccCCc
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLP---STAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P---~vigVl~~Ld~  194 (795)
                      ++..      +.|+.. .+.+..++.+-.|   .++.|.++.|.
T Consensus        82 ~~~~------~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl  118 (170)
T cd04108          82 LTDV------ASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDL  118 (170)
T ss_pred             CcCH------HHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence            9742      224433 3455555444444   36778888885

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=87.60  E-value=12  Score=35.59  Aligned_cols=105  Identities=10%  Similarity=0.076  Sum_probs=56.2

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hcc-CCCCCcc---eEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEEEeeeC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LSS-EGTGALS---STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAFVASA  154 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~~-~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVll~ida  154 (795)
                      |+|+|.++.+.. +|++.++.. +.. +..+.+.   .++..+.....+.++..+. .....+.. .++-||.+++++|.
T Consensus         4 i~iiG~~~vGKT-sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~   82 (162)
T cd04138           4 LVVVGAGGVGKS-ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAI   82 (162)
T ss_pred             EEEECCCCCCHH-HHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEEC
Confidence            789999998886 673333321 111 1111111   1122333344577777763 23444433 56679999999998


Q ss_pred             CCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          155 SSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       155 s~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +..      ..|+.   +-.+++......++| ++.|++..|.
T Consensus        83 ~~~------~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl  118 (162)
T cd04138          83 NSR------KSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDL  118 (162)
T ss_pred             CCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            742      22433   333444433334555 4557888885

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03118 Rab family protein; Provisional

Probab=87.21  E-value=8  Score=39.59  Aligned_cols=104  Identities=11%  Similarity=0.022  Sum_probs=57.2

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcc----eEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhce
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS----STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADL  147 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~----~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADl  147 (795)
                      ++=|+|+|.++.+.. +|    +..|.....     +.|.    .++..+....++.|+.++- .....+.+ ..+-||.
T Consensus        14 ~~kv~ivG~~~vGKT-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         14 SFKILLIGDSGVGKS-SL----LVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ceEEEEECcCCCCHH-HH----HHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            445889999998886 67    433322111     1121    2233333345788888873 23444433 3567999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~  194 (795)
                      +||++|++..      ..|+.-...++..+..    .++| ++.|.+..|.
T Consensus        89 ~vlv~D~~~~------~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl  132 (211)
T PLN03118         89 IILVYDVTRR------ETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDR  132 (211)
T ss_pred             EEEEEECCCH------HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            9999999842      2243322223333332    2444 4555677774

>cd01865 Rab3 Rab3 subfamily

Probab=87.15  E-value=7  Score=38.02  Aligned_cols=101  Identities=8%  Similarity=0.021  Sum_probs=59.3

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC------CCcc----eEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GALS----STVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~----~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVl  149 (795)
                      |+|+|+++.+.. +|    +..+.....      +.|.    .++..+..+-.+.++.++... ...+ .-..+-||.+|
T Consensus         4 i~i~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l   78 (165)
T cd01865           4 LLIIGNSSVGKT-SF----LFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI   78 (165)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEE
Confidence            789999998886 67    444433221      1121    123333334578888887311 2222 33468899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+. -.+.++.++.+.  -+.++.|.+..|.
T Consensus        79 ~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl  118 (165)
T cd01865          79 LMYDITNE------ESFNA-VQDWSTQIKTYSWDNAQVILVGNKCDM  118 (165)
T ss_pred             EEEECCCH------HHHHH-HHHHHHHHHHhCCCCCCEEEEEECccc
Confidence            99998753      23442 244555665543  2447777888875

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04147 Ras_dva Ras-dva subfamily

Probab=86.82  E-value=11  Score=38.26  Aligned_cols=105  Identities=11%  Similarity=0.115  Sum_probs=54.6

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hcc-CCCCC---cceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEeeeC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LSS-EGTGA---LSSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVASA  154 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~~-~~~~~---g~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~ida  154 (795)
                      |+|+|.++.+.. +|++.++.. +.. +..+.   ....+..+....+++|+..+-. ....+.. ..+-||.||||+|+
T Consensus         2 v~vvG~~~vGKT-sll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           2 LVFMGAAGVGKT-ALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             EEEECCCCCCHH-HHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            689999998876 663322211 000 00110   1122333333467888988721 2233322 35779999999999


Q ss_pred             CCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          155 SSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       155 s~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +..      ..|+.   +-.+++......++|-+ .|++..|.
T Consensus        81 ~~~------~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl  116 (198)
T cd04147          81 DDP------ESFEEVERLREEILEVKEDKFVPIV-VVGNKADS  116 (198)
T ss_pred             CCH------HHHHHHHHHHHHHHHhcCCCCCcEE-EEEEcccc
Confidence            853      22332   22233333333466654 46677664

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=86.75  E-value=10  Score=42.24  Aligned_cols=143  Identities=10%  Similarity=0.152  Sum_probs=69.0

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC-------CC-cce--EEEecCceeeEEEEeCCCCCh----------HHHHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GA-LSS--TVSSSKYRLRTSVLQAPHGDL----------VGCMEM  141 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~-g~~--tv~~~r~k~Ritfie~~~~dl----------~~~LD~  141 (795)
                      |++||++..+.+ +|    +..+++...       +. .|.  .+.... ..+++|+..| .-+          ...+..
T Consensus       160 V~lvG~pnaGKS-TL----l~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~P-Gli~~a~~~~gLg~~flrh  232 (329)
T TIGR02729       160 VGLVGLPNAGKS-TL----ISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIP-GLIEGASEGAGLGHRFLKH  232 (329)
T ss_pred             EEEEcCCCCCHH-HH----HHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCC-CcccCCcccccHHHHHHHH
Confidence            899999998876 77    555543321       11 111  111221 2678888776 322          234455


Q ss_pred             HhhhceEEEeeeCCCccccccccccChHHHHHHHHHH-hcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796          142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR-SLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF  220 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~-aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl  220 (795)
                      ..-||++|+|+|++.....+..+.++.+-.|+..... ....| ++.|++.+|....  ... +.+...|...+  +..+
T Consensus       233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~--~~~-~~~~~~l~~~~--~~~v  306 (329)
T TIGR02729       233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDE--EEL-AELLKELKKAL--GKPV  306 (329)
T ss_pred             HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCCh--HHH-HHHHHHHHHHc--CCcE
Confidence            5669999999998741000000112222222222211 12344 4556888885111  111 12222232233  3568


Q ss_pred             EEeCC--HHHHHHHHHHHh
Q 003796          221 YAADT--KDELHKFLWLFK  237 (795)
Q Consensus       221 f~l~~--~~E~~nL~R~Is  237 (795)
                      |.+|.  ...+..|...|.
T Consensus       307 i~iSAktg~GI~eL~~~I~  325 (329)
T TIGR02729       307 FPISALTGEGLDELLYALA  325 (329)
T ss_pred             EEEEccCCcCHHHHHHHHH
Confidence            88874  233555555554

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=86.56  E-value=7.5  Score=45.17  Aligned_cols=97  Identities=18%  Similarity=0.153  Sum_probs=56.6

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----ceE--EEecCceeeEEEEeCCC-CC---------hHHH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----SST--VSSSKYRLRTSVLQAPH-GD---------LVGC  138 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~~t--v~~~r~k~Ritfie~~~-~d---------l~~~  138 (795)
                      .-|+|+|.++.++. +|    +..+++.+.   ..  |    .++  +..+  ...++++..+- .+         +...
T Consensus       216 ~kV~ivG~~nvGKS-SL----ln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~  288 (449)
T PRK05291        216 LKVVIAGRPNVGKS-SL----LNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERS  288 (449)
T ss_pred             CEEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHH
Confidence            45899999998876 77    555544321   11  1    111  2223  24678887652 12         2234


Q ss_pred             HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       139 LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +..++-||++|+|+|++.+        ...+-.+++..  .++.| ++.|++..|.
T Consensus       289 ~~~~~~aD~il~VvD~s~~--------~s~~~~~~l~~--~~~~p-iiiV~NK~DL  333 (449)
T PRK05291        289 REAIEEADLVLLVLDASEP--------LTEEDDEILEE--LKDKP-VIVVLNKADL  333 (449)
T ss_pred             HHHHHhCCEEEEEecCCCC--------CChhHHHHHHh--cCCCC-cEEEEEhhhc
Confidence            5668889999999999854        22222333332  45554 5677888775

>cd04112 Rab26 Rab26 subfamily

Probab=86.53  E-value=7.9  Score=38.93  Aligned_cols=100  Identities=9%  Similarity=0.101  Sum_probs=56.0

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC-------CCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLV  148 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlV  148 (795)
                      |+|+|.++++.. +|    +..|.....       +.+    ...+..+..+-+++++..|.. .+..+ ....+-||.+
T Consensus         3 i~vvG~~~vGKT-Sl----i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~   77 (191)
T cd04112           3 VMLLGDSGVGKT-CL----LVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL   77 (191)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence            789999998886 67    444432211       111    112333444567777787622 23333 3456779999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      |+|+|++..      ..|+.- ...+..+...   ++| ++.|++..|.
T Consensus        78 i~v~D~~~~------~s~~~~-~~~~~~i~~~~~~~~p-iiiv~NK~Dl  118 (191)
T cd04112          78 LLLYDITNK------ASFDNI-RAWLTEIKEYAQEDVV-IMLLGNKADM  118 (191)
T ss_pred             EEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence            999999842      223322 2244444443   343 5666787775

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=86.42  E-value=10  Score=36.57  Aligned_cols=102  Identities=11%  Similarity=0.039  Sum_probs=54.5

Q ss_pred             EEEEecCCCccChhhHHHHHHHhh-ccCCCCC-----c---ceEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQL-SSEGTGA-----L---SSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVA  149 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~~~~-----g---~~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVl  149 (795)
                      -|+|+|.++.+.. +|    +..| .+.-...     +   ..++..+.....++++..+. ..+..+.+. ++-||.+|
T Consensus         3 ki~i~G~~~vGKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i   77 (163)
T cd04176           3 KVVVLGSGGVGKS-AL----TVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   77 (163)
T ss_pred             EEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence            4899999998886 56    3333 2211111     1   12333343345677787752 234444443 57799999


Q ss_pred             EeeeCCCccccccccccChHHH---HHHHHHHhcCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGN---QCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~---e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+.-..   ++.+.....++| ++.|++..|.
T Consensus        78 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl  118 (163)
T cd04176          78 VVYSLVNQ------QTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDL  118 (163)
T ss_pred             EEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            99998742      22443222   222221123555 4556777774

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04177 RSR1 RSR1 subgroup

Probab=86.35  E-value=7.5  Score=37.90  Aligned_cols=106  Identities=14%  Similarity=0.124  Sum_probs=59.7

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhc--cCCCCCc---ceEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEEEeee
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLS--SEGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVAFVAS  153 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~--~~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVll~id  153 (795)
                      =|+++|+++++.. +|++.+++.-.  .+..+.+   ..++..+....++.++..+- ..+.++.+. .+.||.+||++|
T Consensus         3 ki~liG~~~~GKT-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~   81 (168)
T cd04177           3 KIVVLGAGGVGKS-ALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS   81 (168)
T ss_pred             EEEEECCCCCCHH-HHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence            3899999998886 67333332211  1111111   12233343446778888763 345555554 478999999999


Q ss_pred             CCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          154 ASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+..      +.|+   .+-.++++....-+.|-+ .|.+..|.
T Consensus        82 ~~~~------~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~  118 (168)
T cd04177          82 VTSE------ASLNELGELREQVLRIKDSDNVPMV-LVGNKADL  118 (168)
T ss_pred             CCCH------HHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhc
Confidence            8753      2233   333444444334577754 46777774

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PTZ00369 Ras-like protein; Provisional

Probab=85.98  E-value=11  Score=37.90  Aligned_cols=103  Identities=12%  Similarity=0.042  Sum_probs=56.6

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCC------CCCcc---eEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceE
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEG------TGALS---STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLV  148 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlV  148 (795)
                      +=|+|+|.++.+.. +|    +..|....      .+.|.   .++..+.....+.++..+- .+...+.. ..+-||.+
T Consensus         6 ~Ki~iiG~~~~GKT-sL----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i   80 (189)
T PTZ00369          6 YKLVVVGGGGVGKS-AL----TIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF   80 (189)
T ss_pred             eEEEEECCCCCCHH-HH----HHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence            34789999998876 66    44443221      11121   1223333345677787753 34444433 56789999


Q ss_pred             EEeeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      |+++|.+..      ..|+.   +-.++++.+...++| ++.|.+..|.
T Consensus        81 ilv~D~s~~------~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl  122 (189)
T PTZ00369         81 LCVYSITSR------SSFEEIASFREQILRVKDKDRVP-MILVGNKCDL  122 (189)
T ss_pred             EEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            999999853      22333   333343333333444 4556677664

>cd04143 Rhes_like Rhes_like subfamily

Probab=85.72  E-value=16  Score=38.82  Aligned_cols=155  Identities=10%  Similarity=0.115  Sum_probs=78.4

Q ss_pred             EEEecCCCccChhhHHHHHHHhhc-cCCC-----CCcc---eEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLS-SEGT-----GALS---STVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~-~~~~-----~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVll  150 (795)
                      |+|+|.++.+.. +|    +..|. +.-.     +.+.   .++......-.+.++..+. .++.+|-.. .+-||.+||
T Consensus         3 VvvlG~~gvGKT-SL----i~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl   77 (247)
T cd04143           3 MVVLGASKVGKT-AI----VSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL   77 (247)
T ss_pred             EEEECcCCCCHH-HH----HHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            789999998876 77    44442 2111     1121   1222232334677787753 334444443 467999999


Q ss_pred             eeeCCCccccccccccCh---HHHHHHHHH--------HhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 003796          151 VASASSFSEESMSYYIDS---FGNQCLSVF--------RSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCK  219 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~---eg~e~L~~l--------~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~K  219 (795)
                      |+|.+..      ..|+.   +-.+++..-        ...++| +|.|.+..|.. ..+......++..+...  .+..
T Consensus        78 Vfdv~~~------~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~-~~~~v~~~ei~~~~~~~--~~~~  147 (247)
T cd04143          78 VFSLDNR------ESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRD-FPREVQRDEVEQLVGGD--ENCA  147 (247)
T ss_pred             EEeCCCH------HHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccch-hccccCHHHHHHHHHhc--CCCE
Confidence            9998842      22432   333333321        012344 45567777751 11111111222222111  1456


Q ss_pred             eEEeCC--HHHHHHHHHHHhhccccCcccccCCC
Q 003796          220 FYAADT--KDELHKFLWLFKEQRLTVPHWRNQRP  251 (795)
Q Consensus       220 lf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rp  251 (795)
                      +|.+|.  ...+..|...|..+...|..+..++.
T Consensus       148 ~~evSAktg~gI~elf~~L~~~~~~p~e~~~~~~  181 (247)
T cd04143         148 YFEVSAKKNSNLDEMFRALFSLAKLPNEMSPSLH  181 (247)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhccccccCcccc
Confidence            777773  34566777777766655655544443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01870 RhoA_like RhoA-like subfamily

Probab=85.59  E-value=17  Score=35.48  Aligned_cols=101  Identities=9%  Similarity=0.096  Sum_probs=53.3

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC-CC----C-cc---eEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG-TG----A-LS---STVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~-~~----~-g~---~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADlVll  150 (795)
                      |+|+|+++++.. +|    +..|.... ..    . +.   ..+.....+-.+.++..+... ...+. -..+-||.+++
T Consensus         4 i~iiG~~~~GKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   78 (175)
T cd01870           4 LVIVGDGACGKT-CL----LIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   78 (175)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence            789999998886 67    44443211 11    1 11   123333334467777766222 22221 23466999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      ++|.+.-      ..|+.....++..++..  ++| ++.|.+..|.
T Consensus        79 v~~~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  117 (175)
T cd01870          79 CFSIDSP------DSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL  117 (175)
T ss_pred             EEECCCH------HHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhc
Confidence            9998741      22433333344444432  444 4566677664

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=85.22  E-value=16  Score=42.25  Aligned_cols=101  Identities=13%  Similarity=0.126  Sum_probs=55.3

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCC--C------cceE--EEecCceeeEEEEeCCCCCh----------HHHHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSST--VSSSKYRLRTSVLQAPHGDL----------VGCMEM  141 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~t--v~~~r~k~Ritfie~~~~dl----------~~~LD~  141 (795)
                      |++||+|+.+.+ +|    +..+++....  .      .|..  +... -..+|+|+..| .=+          ...|-.
T Consensus       161 VglVG~pNaGKS-TL----Ln~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~P-Gliega~~~~gLg~~fLrh  233 (424)
T PRK12297        161 VGLVGFPNVGKS-TL----LSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIP-GLIEGASEGVGLGHQFLRH  233 (424)
T ss_pred             EEEEcCCCCCHH-HH----HHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECC-CCcccccccchHHHHHHHH
Confidence            899999998875 77    5556544321  1      1211  1111 03578888777 321          344555


Q ss_pred             HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCc
Q 003796          142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPT  194 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a-----qG~P~vigVl~~Ld~  194 (795)
                      +.-||++|+|+|++..   +....++. -..+++.|..     .+.|.+ .|++..|.
T Consensus       234 ier~~llI~VID~s~~---~~~dp~e~-~~~i~~EL~~y~~~L~~kP~I-VV~NK~DL  286 (424)
T PRK12297        234 IERTRVIVHVIDMSGS---EGRDPIED-YEKINKELKLYNPRLLERPQI-VVANKMDL  286 (424)
T ss_pred             HhhCCEEEEEEeCCcc---ccCChHHH-HHHHHHHHhhhchhccCCcEE-EEEeCCCC
Confidence            5669999999999731   00011111 1233344443     355554 56887775

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=85.15  E-value=2.3  Score=42.36  Aligned_cols=123  Identities=13%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC----cc-eEEEecCc---eeeEEEEeCCC-CChHHH-------HHHH--
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----LS-STVSSSKY---RLRTSVLQAPH-GDLVGC-------MEMA--  142 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g~-~tv~~~r~---k~Ritfie~~~-~dl~~~-------LD~a--  142 (795)
                      -||++|.|.+++. +|    +..+|+.....    |. +....+.+   ...+.|+-.|- -++.+.       .+..  
T Consensus         2 ~ialvG~PNvGKS-tL----fN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~   76 (156)
T PF02421_consen    2 RIALVGNPNVGKS-TL----FNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS   76 (156)
T ss_dssp             EEEEEESTTSSHH-HH----HHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHH-HH----HHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence            4899999998885 77    56665544221    11 11111222   27888888872 122221       2222  


Q ss_pred             hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHH-HHHHHHhhcccccCCCCeeE
Q 003796          143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKD-LKKMCISSLTSEFPEDCKFY  221 (795)
Q Consensus       143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~-~kK~lk~~f~~ef~~~~Klf  221 (795)
                      .-.|+||+++||+.         ++ ...+++.-|...|+|-| .||+..|...++.-. --+.|.+++      |..++
T Consensus        77 ~~~D~ii~VvDa~~---------l~-r~l~l~~ql~e~g~P~v-vvlN~~D~a~~~g~~id~~~Ls~~L------g~pvi  139 (156)
T PF02421_consen   77 EKPDLIIVVVDATN---------LE-RNLYLTLQLLELGIPVV-VVLNKMDEAERKGIEIDAEKLSERL------GVPVI  139 (156)
T ss_dssp             TSSSEEEEEEEGGG---------HH-HHHHHHHHHHHTTSSEE-EEEETHHHHHHTTEEE-HHHHHHHH------TS-EE
T ss_pred             cCCCEEEEECCCCC---------HH-HHHHHHHHHHHcCCCEE-EEEeCHHHHHHcCCEECHHHHHHHh------CCCEE
Confidence            24899999999984         43 34567888889999954 456666641111110 123333333      46788


Q ss_pred             EeCC
Q 003796          222 AADT  225 (795)
Q Consensus       222 ~l~~  225 (795)
                      +++.
T Consensus       140 ~~sa  143 (156)
T PF02421_consen  140 PVSA  143 (156)
T ss_dssp             EEBT
T ss_pred             EEEe
Confidence            8874

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=85.13  E-value=4.4  Score=42.73  Aligned_cols=84  Identities=17%  Similarity=0.273  Sum_probs=55.2

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC--------cce--EEEecCceeeEEEEeCCCCC----------hHHHHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSS--TVSSSKYRLRTSVLQAPHGD----------LVGCMEM  141 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~--tv~~~r~k~Ritfie~~~~d----------l~~~LD~  141 (795)
                      |+++|+++++.. +|    ++.+++.....        .+.  .+...  ..+++++..| .-          ...++.+
T Consensus         3 v~lvG~~~~GKS-tL----l~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~Dtp-G~~~~~~~~~~~~~~~l~~   74 (233)
T cd01896           3 VALVGFPSVGKS-TL----LSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLP-GIIEGAADGKGRGRQVIAV   74 (233)
T ss_pred             EEEECCCCCCHH-HH----HHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECC-CcccccccchhHHHHHHHh
Confidence            789999998875 77    66665543211        111  11122  3678888876 32          1357889


Q ss_pred             HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC
Q 003796          142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL  182 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~  182 (795)
                      ++-||++|+|+|++..         +..-..++..|...|+
T Consensus        75 ~~~ad~il~V~D~t~~---------~~~~~~~~~~l~~~gi  106 (233)
T cd01896          75 ARTADLILMVLDATKP---------EGHREILERELEGVGI  106 (233)
T ss_pred             hccCCEEEEEecCCcc---------hhHHHHHHHHHHHcCc
Confidence            9999999999999742         2244567777877777

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=84.99  E-value=13  Score=36.04  Aligned_cols=66  Identities=23%  Similarity=0.243  Sum_probs=39.5

Q ss_pred             EecCCCccChhhHHHHHHHhhccCCC--CC------cc--eEEEecCceeeEEEEeCCCCC----------hHHHHHHHh
Q 003796           84 LFGLSASVNLNSVREDLLRQLSSEGT--GA------LS--STVSSSKYRLRTSVLQAPHGD----------LVGCMEMAK  143 (795)
Q Consensus        84 Vvg~~~~~~~~sl~~~lvk~~~~~~~--~~------g~--~tv~~~r~k~Ritfie~~~~d----------l~~~LD~aK  143 (795)
                      ++|+++.+.. +|    ++.++....  ..      .+  -.+..+. ..++.|+..| .-          ...++..++
T Consensus         1 iiG~~~~GKS-tl----l~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dtp-G~~~~~~~~~~~~~~~~~~~~   73 (176)
T cd01881           1 LVGLPNVGKS-TL----LNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIP-GLIEGASEGRGLGNQFLAHIR   73 (176)
T ss_pred             CCCCCCCcHH-HH----HHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEecc-ccchhhhcCCCccHHHHHHHh
Confidence            4788888876 77    554444321  11      11  1122220 3578888776 31          224567778


Q ss_pred             hhceEEEeeeCCC
Q 003796          144 VADLVAFVASASS  156 (795)
Q Consensus       144 vADlVll~idas~  156 (795)
                      -||.|++++|++.
T Consensus        74 ~~d~ii~v~d~~~   86 (176)
T cd01881          74 RADAILHVVDASE   86 (176)
T ss_pred             ccCEEEEEEeccC
Confidence            8999999999985

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=84.90  E-value=7.2  Score=45.27  Aligned_cols=100  Identities=14%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCC-CChHH--------
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPH-GDLVG--------  137 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~------~tv~~~r~k~Ritfie~~~-~dl~~--------  137 (795)
                      .+.-|+|+|+++.++. +|    +..|++.+.   +.  |.      .++..+.  ..++++..+- .+..+        
T Consensus       202 ~g~kVvIvG~~nvGKS-SL----iN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~  274 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKS-SL----LNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIE  274 (442)
T ss_pred             cCCEEEEECCCCCcHH-HH----HHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHH
Confidence            3456889999998886 77    444443321   11  21      1222222  4567777652 12222        


Q ss_pred             -HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          138 -CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       138 -~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                       .....+-||++|+|+|++.+        ...+.. ++..++..|.| ++.|++..|.
T Consensus       275 ~~~~~~~~aD~il~V~D~s~~--------~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl  322 (442)
T TIGR00450       275 KSFKAIKQADLVIYVLDASQP--------LTKDDF-LIIDLNKSKKP-FILVLNKIDL  322 (442)
T ss_pred             HHHHHHhhCCEEEEEEECCCC--------CChhHH-HHHHHhhCCCC-EEEEEECccC
Confidence             24566789999999999854        222222 56666666765 5678888885

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=84.50  E-value=28  Score=34.19  Aligned_cols=101  Identities=11%  Similarity=0.059  Sum_probs=55.3

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC-C----C-c---ceEEEecCceeeEEEEeCCCCChHHHH--HHHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT-G----A-L---SSTVSSSKYRLRTSVLQAPHGDLVGCM--EMAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~----~-g---~~tv~~~r~k~Ritfie~~~~dl~~~L--D~aKvADlVll  150 (795)
                      |+|+|+++.++. +|    ++.+..... .    . +   ...+......-++.++..|...-..++  .....+|.+|+
T Consensus         4 v~l~G~~g~GKT-tl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   78 (180)
T cd04137           4 IAVLGSRSVGKS-SL----TVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL   78 (180)
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEE
Confidence            789999998886 66    444432211 1    1 1   112223333446677887632222222  35677999999


Q ss_pred             eeeCCCccccccccccChHH---HHHHHHHHhcCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFG---NQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg---~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++|.+.+      ..|+.--   ..+++....+++| ++.|.+..|.
T Consensus        79 v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  118 (180)
T cd04137          79 VYSVTSR------KSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDL  118 (180)
T ss_pred             EEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhh
Confidence            9998854      2233222   3333333345667 5566676664

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=84.40  E-value=13  Score=46.23  Aligned_cols=137  Identities=18%  Similarity=0.162  Sum_probs=74.8

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCC--C-cceEEE-----ecCceeeEEEEeCCC-CChHH-----HH------
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A-LSSTVS-----SSKYRLRTSVLQAPH-GDLVG-----CM------  139 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~-g~~tv~-----~~r~k~Ritfie~~~-~dl~~-----~L------  139 (795)
                      ..|+++|.+++++. +|    +..+++....  + .-+|+.     ......++.++..|- .++.+     -+      
T Consensus         4 ~~IaLvG~pNvGKS-TL----fN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          4 LTIGLIGNPNSGKT-TL----FNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             eEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence            35999999998886 77    5555543321  1 112321     111135788888772 22221     11      


Q ss_pred             HH--HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccccCC
Q 003796          140 EM--AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSEFPE  216 (795)
Q Consensus       140 D~--aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk-~~~~kK~lk~~f~~ef~~  216 (795)
                      +.  ...+|+||+++|++.         .+.. ..++..+..+|+| ++.|++.+|...++ .....+.+++.+      
T Consensus        79 ~~l~~~~aD~vI~VvDat~---------ler~-l~l~~ql~e~giP-vIvVlNK~Dl~~~~~i~id~~~L~~~L------  141 (772)
T PRK09554         79 HYILSGDADLLINVVDASN---------LERN-LYLTLQLLELGIP-CIVALNMLDIAEKQNIRIDIDALSARL------  141 (772)
T ss_pred             HHHhccCCCEEEEEecCCc---------chhh-HHHHHHHHHcCCC-EEEEEEchhhhhccCcHHHHHHHHHHh------
Confidence            11  235899999999985         2322 3355667778998 56678887751121 112233344333      


Q ss_pred             CCeeEEeCC--HHHHHHHHHHHhh
Q 003796          217 DCKFYAADT--KDELHKFLWLFKE  238 (795)
Q Consensus       217 ~~Klf~l~~--~~E~~nL~R~Is~  238 (795)
                      |..++.++.  ...+..|...|..
T Consensus       142 G~pVvpiSA~~g~GIdeL~~~I~~  165 (772)
T PRK09554        142 GCPVIPLVSTRGRGIEALKLAIDR  165 (772)
T ss_pred             CCCEEEEEeecCCCHHHHHHHHHH
Confidence            467777773  2334445555543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=84.34  E-value=2.7  Score=41.99  Aligned_cols=103  Identities=14%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC-----Ccc--eEEEecCceeeEEEEeCCCCC--hHHHH-HHHhhhc
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----ALS--STVSSSKYRLRTSVLQAPHGD--LVGCM-EMAKVAD  146 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~g~--~tv~~~r~k~Ritfie~~~~d--l~~~L-D~aKvAD  146 (795)
                      ....=|+|+||.+++.. ++    ++.+......     .|.  .++..  .+.+++|.+++ .+  +.++- ...+-+|
T Consensus        12 ~~~~~ililGl~~sGKT-tl----l~~l~~~~~~~~~pT~g~~~~~i~~--~~~~~~~~d~g-G~~~~~~~w~~y~~~~~   83 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKT-TL----LNRLKNGEISETIPTIGFNIEEIKY--KGYSLTIWDLG-GQESFRPLWKSYFQNAD   83 (175)
T ss_dssp             TSEEEEEEEESTTSSHH-HH----HHHHHSSSEEEEEEESSEEEEEEEE--TTEEEEEEEES-SSGGGGGGGGGGHTTES
T ss_pred             CcEEEEEEECCCccchH-HH----HHHhhhccccccCcccccccceeee--CcEEEEEEecc-ccccccccceeeccccc
Confidence            44556899999999886 66    5555432211     132  23333  35789999997 44  22222 3456789


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~  194 (795)
                      .||||+|++.-      +.+++--.++-++|.   .++.| ++.+++.-|.
T Consensus        84 ~iIfVvDssd~------~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~  127 (175)
T PF00025_consen   84 GIIFVVDSSDP------ERLQEAKEELKELLNDPELKDIP-ILILANKQDL  127 (175)
T ss_dssp             EEEEEEETTGG------GGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTS
T ss_pred             eeEEEEecccc------eeecccccchhhhcchhhcccce-EEEEeccccc
Confidence            99999999842      346666666666665   34554 3344565553

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=84.33  E-value=5.4  Score=45.88  Aligned_cols=133  Identities=13%  Similarity=0.112  Sum_probs=79.6

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCC--C-----------cceEEEecCceeeEEEEeCCC---CC---h-----
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A-----------LSSTVSSSKYRLRTSVLQAPH---GD---L-----  135 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~-----------g~~tv~~~r~k~Ritfie~~~---~d---l-----  135 (795)
                      .+|||||=|+.+.+ +|    ...+++....  .           +...+. +   +.|++|.-+-   ++   |     
T Consensus         4 ~~VAIVGRPNVGKS-TL----FNRL~g~r~AIV~D~pGvTRDr~y~~~~~~-~---~~f~lIDTgGl~~~~~~~l~~~i~   74 (444)
T COG1160           4 PVVAIVGRPNVGKS-TL----FNRLTGRRIAIVSDTPGVTRDRIYGDAEWL-G---REFILIDTGGLDDGDEDELQELIR   74 (444)
T ss_pred             CEEEEECCCCCcHH-HH----HHHHhCCeeeEeecCCCCccCCccceeEEc-C---ceEEEEECCCCCcCCchHHHHHHH
Confidence            46999999998775 67    5555544321  1           222222 2   3477776532   12   2     


Q ss_pred             HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccC
Q 003796          136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFP  215 (795)
Q Consensus       136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~  215 (795)
                      ...+-|+.-||+||||+|+..|        ...+-+++-+.|+-.+-| |+.|++.+|.  ++..    ....-||+.- 
T Consensus        75 ~Qa~~Ai~eADvilfvVD~~~G--------it~~D~~ia~~Lr~~~kp-viLvvNK~D~--~~~e----~~~~efyslG-  138 (444)
T COG1160          75 EQALIAIEEADVILFVVDGREG--------ITPADEEIAKILRRSKKP-VILVVNKIDN--LKAE----ELAYEFYSLG-  138 (444)
T ss_pred             HHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEcccC--chhh----hhHHHHHhcC-
Confidence            2356788889999999999976        666778888888855555 5566777776  3211    1222333321 


Q ss_pred             CCCeeEEeCC--HHHHHHHHHHHhh
Q 003796          216 EDCKFYAADT--KDELHKFLWLFKE  238 (795)
Q Consensus       216 ~~~Klf~l~~--~~E~~nL~R~Is~  238 (795)
                       -.+.+.+|.  -.-+..|+-.|..
T Consensus       139 -~g~~~~ISA~Hg~Gi~dLld~v~~  162 (444)
T COG1160         139 -FGEPVPISAEHGRGIGDLLDAVLE  162 (444)
T ss_pred             -CCCceEeehhhccCHHHHHHHHHh
Confidence             357777774  2334455555533

>cd04122 Rab14 Rab14 subfamily

Probab=84.11  E-value=16  Score=35.38  Aligned_cols=101  Identities=9%  Similarity=0.067  Sum_probs=56.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVl  149 (795)
                      |+|+|+++.+.. +|    +..|.....      +.|    ..++.....+-++.++.++-.. +..+ ....+=||.+|
T Consensus         5 i~iiG~~~vGKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   79 (166)
T cd04122           5 YIIIGDMGVGKS-CL----LHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   79 (166)
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            789999998886 67    444432221      111    2233344445677888876222 2222 34578899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~  194 (795)
                      |++|.+..      ..|+.- .++++.++...-|  .++.|.++.|.
T Consensus        80 lv~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl  119 (166)
T cd04122          80 MVYDITRR------STYNHL-SSWLTDARNLTNPNTVIFLIGNKADL  119 (166)
T ss_pred             EEEECCCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEECccc
Confidence            99999842      223322 2344444333333  25556777774

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04148 RGK RGK subfamily

Probab=83.94  E-value=11  Score=39.17  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=56.5

Q ss_pred             EEEecCCCccChhhHHHHHHHhhc-cCC------CCC----cceEEEecCceeeEEEEeCCCCChHHHHHHH-h-hhceE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLS-SEG------TGA----LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMA-K-VADLV  148 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~-~~~------~~~----g~~tv~~~r~k~Ritfie~~~~dl~~~LD~a-K-vADlV  148 (795)
                      |+|+|.++.+.. +|    +..|. +..      .+.    ...++........++|+.++..+ ..+-+.+ + -||.+
T Consensus         3 I~lvG~~gvGKT-sL----i~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~ad~i   76 (221)
T cd04148           3 VVMLGSPGVGKS-SL----ASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-MWTEDSCMQYQGDAF   76 (221)
T ss_pred             EEEECCCCCcHH-HH----HHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-hHHHhHHhhcCCCEE
Confidence            789999998886 67    44442 211      111    12344444345678889887333 2333333 4 79999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~  194 (795)
                      |||+|++..      ..|+. ..+++..|...    +.| +|.|.+..|.
T Consensus        77 ilV~d~td~------~S~~~-~~~~~~~l~~~~~~~~~p-iilV~NK~Dl  118 (221)
T cd04148          77 VVVYSVTDR------SSFER-ASELRIQLRRNRQLEDRP-IILVGNKSDL  118 (221)
T ss_pred             EEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence            999999853      23442 23344444333    344 5667777774

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>COG2262 HflX GTPases [General function prediction only]

Probab=83.68  E-value=8  Score=44.01  Aligned_cols=55  Identities=20%  Similarity=0.173  Sum_probs=36.9

Q ss_pred             CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          133 GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       133 ~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      .-+.+.|.-++-||++|.|+|||.       +.+...-.-..++|+.-|+  +.++.|++.+|.
T Consensus       260 ~AFksTLEE~~~aDlllhVVDaSd-------p~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~  316 (411)
T COG2262         260 EAFKSTLEEVKEADLLLHVVDASD-------PEILEKLEAVEDVLAEIGADEIPIILVLNKIDL  316 (411)
T ss_pred             HHHHHHHHHhhcCCEEEEEeecCC-------hhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence            345678999999999999999995       2344444444444444333  456777888773

>cd04121 Rab40 Rab40 subfamily

Probab=83.58  E-value=28  Score=35.37  Aligned_cols=144  Identities=11%  Similarity=0.150  Sum_probs=77.2

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhcc-CCCC-----Cc----ceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhce
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSS-EGTG-----AL----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADL  147 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~~~-----~g----~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADl  147 (795)
                      +=|+|+|..+.+.. +|    +..|.. ....     .|    ..++..+..+-++.|+..+. .....+.. ..+-||.
T Consensus         7 ~KivviG~~~vGKT-sl----l~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           7 LKFLLVGDSDVGKG-EI----LASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             eEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            34889999998876 66    444432 1111     11    23344444456788887652 34555543 4589999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEE
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYA  222 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~  222 (795)
                      +|||+|.+..      ..|+.- ...+..++.+  ++ .+|.|.++.|....+   ..+.+...++     .  +..+|-
T Consensus        82 illVfD~t~~------~Sf~~~-~~w~~~i~~~~~~~-piilVGNK~DL~~~~~v~~~~~~~~a~~-----~--~~~~~e  146 (189)
T cd04121          82 IILVYDITNR------WSFDGI-DRWIKEIDEHAPGV-PKILVGNRLHLAFKRQVATEQAQAYAER-----N--GMTFFE  146 (189)
T ss_pred             EEEEEECcCH------HHHHHH-HHHHHHHHHhCCCC-CEEEEEECccchhccCCCHHHHHHHHHH-----c--CCEEEE
Confidence            9999999853      335433 2334444443  33 335567787751111   1122332221     1  345666


Q ss_pred             eC-----CHHH-HHHHHHHHhhccccC
Q 003796          223 AD-----TKDE-LHKFLWLFKEQRLTV  243 (795)
Q Consensus       223 l~-----~~~E-~~nL~R~Is~~k~r~  243 (795)
                      .|     +-.| ...|++.|...+.+|
T Consensus       147 ~SAk~g~~V~~~F~~l~~~i~~~~~~~  173 (189)
T cd04121         147 VSPLCNFNITESFTELARIVLMRHGRP  173 (189)
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence            66     3444 446777666555544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04140 ARHI_like ARHI subfamily

Probab=83.51  E-value=16  Score=35.40  Aligned_cols=102  Identities=11%  Similarity=0.084  Sum_probs=55.1

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCC-----CCC-cceE---EEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEG-----TGA-LSST---VSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA  149 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~-g~~t---v~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVl  149 (795)
                      =|+|+|.++.+.. +|    ++.|....     ... +..+   +.......++.|+..+.. ....+. ...+-||.+|
T Consensus         3 kv~~vG~~~vGKT-sl----i~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   77 (165)
T cd04140           3 RVVVFGAGGVGKS-SL----VLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   77 (165)
T ss_pred             EEEEECCCCCCHH-HH----HHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE
Confidence            3789999998886 66    44443221     111 2111   122333456778887632 233332 2456799999


Q ss_pred             EeeeCCCccccccccccChH--HHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSF--GNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~e--g~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+..  -.+.|..++.   .++| ++.|.+..|.
T Consensus        78 lv~d~~~~------~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl  120 (165)
T cd04140          78 LVYSVTSK------QSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDE  120 (165)
T ss_pred             EEEECCCH------HHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccc
Confidence            99998853      234321  1233433332   4566 5557787775

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04117 Rab15 Rab15 subfamily

Probab=83.35  E-value=16  Score=35.41  Aligned_cols=102  Identities=11%  Similarity=0.051  Sum_probs=57.0

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCC-CC-----Cc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhceE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEG-TG-----AL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLV  148 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~~-----~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADlV  148 (795)
                      -|+|+|+++.+.. +|    +..|.... ..     .|    ..++..+....++.++.++.. ...+ .-...+.||.+
T Consensus         2 ki~vvG~~~~GKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~   76 (161)
T cd04117           2 RLLLIGDSGVGKT-CL----LCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGI   76 (161)
T ss_pred             EEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEE
Confidence            3889999998886 66    43332211 11     12    223444444457778888632 2222 23456889999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      |+++|.+..      ..|+.. ...+..+..+..  ..++.|.+..|.
T Consensus        77 i~v~d~~~~------~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl  117 (161)
T cd04117          77 FLVYDISSE------RSYQHI-MKWVSDVDEYAPEGVQKILIGNKADE  117 (161)
T ss_pred             EEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEECccc
Confidence            999998742      235433 334555544432  234555676664

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=83.34  E-value=16  Score=40.54  Aligned_cols=87  Identities=15%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC--cce-EE--Eec---CceeeEEEEeCCC------CCh---HHHHHHHhh
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSS-TV--SSS---KYRLRTSVLQAPH------GDL---VGCMEMAKV  144 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g~~-tv--~~~---r~k~Ritfie~~~------~dl---~~~LD~aKv  144 (795)
                      |++||+|..+.. +|    +..+|+...+.  -++ |+  +-+   -.-..|+++..|.      ..-   ..+|-++.-
T Consensus        66 v~lVGfPsvGKS-tL----L~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          66 VALVGFPSVGKS-TL----LNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             EEEEcCCCccHH-HH----HHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            889999988775 67    77787765443  121 11  111   1236788998872      111   348889999


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL  182 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~  182 (795)
                      ||+|++++|+...         .-.-.-++.-|..-|+
T Consensus       141 ADlIiiVld~~~~---------~~~~~~i~~ELe~~GI  169 (365)
T COG1163         141 ADLIIIVLDVFED---------PHHRDIIERELEDVGI  169 (365)
T ss_pred             CCEEEEEEecCCC---------hhHHHHHHHHHHhcCe
Confidence            9999999999742         1123466777777775

>cd04132 Rho4_like Rho4-like subfamily

Probab=83.17  E-value=9.2  Score=37.95  Aligned_cols=101  Identities=9%  Similarity=0.058  Sum_probs=55.7

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCC-----C-c---ceEEEec-CceeeEEEEeCCCC-ChHHHHH-HHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-----A-L---SSTVSSS-KYRLRTSVLQAPHG-DLVGCME-MAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~-g---~~tv~~~-r~k~Ritfie~~~~-dl~~~LD-~aKvADlVl  149 (795)
                      |+|+|.++.+.. +|    +..|......     . +   ..++... ...-.+.++..+.. ....+.. ..+-||.+|
T Consensus         3 i~vvG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii   77 (187)
T cd04132           3 IVVVGDGGCGKT-CL----LIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL   77 (187)
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence            789999998886 67    3333322111     1 1   1122222 33456778887622 2333333 457899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHh--cCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRS--LGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~a--qG~P~vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+.--...+..++.  .+.| ++.|.++.|.
T Consensus        78 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  117 (187)
T cd04132          78 ICYAVDNP------TSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDL  117 (187)
T ss_pred             EEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhh
Confidence            99998842      2344333334444432  3444 5667787774

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=83.02  E-value=20  Score=39.42  Aligned_cols=203  Identities=15%  Similarity=0.174  Sum_probs=127.4

Q ss_pred             CCEEEEEecCC---CccChhhHHHHHHHhhc----cCCC-C------CcceEEEec-----CceeeEEEEeCCC-CC-hH
Q 003796           78 PPRVIVLFGLS---ASVNLNSVREDLLRQLS----SEGT-G------ALSSTVSSS-----KYRLRTSVLQAPH-GD-LV  136 (795)
Q Consensus        78 pP~iV~Vvg~~---~~~~~~sl~~~lvk~~~----~~~~-~------~g~~tv~~~-----r~k~Ritfie~~~-~d-l~  136 (795)
                      |=.-|+.+|--   ++++...+...|.+.+.    .++. .      +--|||...     --+|-+.++.||- .| +-
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK   90 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK   90 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence            33447777743   36666666444444321    1111 1      134555432     2368899999984 23 77


Q ss_pred             HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhH-----HHHHHHHhhc
Q 003796          137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRK-----DLKKMCISSL  210 (795)
Q Consensus       137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~-----~~kK~lk~~f  210 (795)
                      .||--|--+|-.||+++|..|        --..|.|=+-+.+--|+|.++.+|+..|. +...+.     .++-.|..| 
T Consensus        91 NMItgAaqmDgAILVVsA~dG--------pmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y-  161 (394)
T COG0050          91 NMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY-  161 (394)
T ss_pred             HHhhhHHhcCccEEEEEcCCC--------CCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc-
Confidence            899999999999999999977        22356776667777899999999999886 212222     245555433 


Q ss_pred             ccccC-------CCCeeEEeCC----HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEe
Q 003796          211 TSEFP-------EDCKFYAADT----KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLR  279 (795)
Q Consensus       211 ~~ef~-------~~~Klf~l~~----~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvR  279 (795)
                        .|+       .|++|-.|.+    ..-|..|+-.+..--|.|-. -...|+++.=.=-+.-     ..+...++|-|-
T Consensus       162 --~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per-~~dkPflmpvEdvfsI-----sgrgtvvtGrVe  233 (394)
T COG0050         162 --GFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER-DIDKPFLMPVEDVFSI-----SGRGTVVTGRVE  233 (394)
T ss_pred             --CCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-cccccccccceeeEEE-----cCceeEEEEEEe
Confidence              344       3555555654    34466677766665555543 3456777752211111     136788999886


Q ss_pred             CCCCCCCCeEEeCCCCce
Q 003796          280 AHCLSVNQLVHISGAGDF  297 (795)
Q Consensus       280 G~~l~~n~lVHIpG~GDf  297 (795)
                      -.-|++|.-|-|+|+.+-
T Consensus       234 RG~lkvg~eveivG~~~~  251 (394)
T COG0050         234 RGILKVGEEVEIVGIKET  251 (394)
T ss_pred             eeeeccCCEEEEeccccc
Confidence            556999999999998843

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=82.97  E-value=9.9  Score=36.11  Aligned_cols=61  Identities=18%  Similarity=0.255  Sum_probs=37.8

Q ss_pred             eeEEEEeCCC-CChHH-------HHHHH--hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccC
Q 003796          123 LRTSVLQAPH-GDLVG-------CMEMA--KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDL  192 (795)
Q Consensus       123 ~Ritfie~~~-~dl~~-------~LD~a--KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~L  192 (795)
                      ..+.|+..|- .++..       .....  +-+|+||+++|++..         +. ...++..+...|.| ++.|++.+
T Consensus        43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---------~~-~~~~~~~~~~~~~~-~iiv~NK~  111 (158)
T cd01879          43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL---------ER-NLYLTLQLLELGLP-VVVALNMI  111 (158)
T ss_pred             eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc---------hh-HHHHHHHHHHcCCC-EEEEEehh
Confidence            5788898873 12221       12222  489999999999852         22 22344455567876 56778887


Q ss_pred             Cc
Q 003796          193 PT  194 (795)
Q Consensus       193 d~  194 (795)
                      |.
T Consensus       112 Dl  113 (158)
T cd01879         112 DE  113 (158)
T ss_pred             hh
Confidence            75

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=82.67  E-value=17  Score=34.86  Aligned_cols=104  Identities=6%  Similarity=0.020  Sum_probs=54.6

Q ss_pred             EEEecCCCccChhhHHHHHHHh---hcc-CCCCCcce----EEEe-cCceeeEEEEeCCCCC-hHHHH-HHHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ---LSS-EGTGALSS----TVSS-SKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~---~~~-~~~~~g~~----tv~~-~r~k~Ritfie~~~~d-l~~~L-D~aKvADlVll  150 (795)
                      |+|+|.++++.. +|++.+...   +.. +..+.|+-    ++.. +..+..+.++.++-.. ...|+ -..+-||.+|+
T Consensus         3 i~vvG~~~~GKt-sl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (164)
T cd04101           3 CAVVGDPAVGKT-AFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFIL   81 (164)
T ss_pred             EEEECCCCCCHH-HHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            789999998886 673332211   111 11111321    2222 2345677788876222 23332 33455999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      |+|.+..      ..|+ +-...+..+..+  +. .++.|+++.|.
T Consensus        82 v~d~~~~------~s~~-~~~~~~~~~~~~~~~~-p~ilv~nK~Dl  119 (164)
T cd04101          82 VYDVSNK------ASFE-NCSRWVNKVRTASKHM-PGVLVGNKMDL  119 (164)
T ss_pred             EEECcCH------HHHH-HHHHHHHHHHHhCCCC-CEEEEEECccc
Confidence            9998842      1232 223444554443  43 44556777775

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=82.13  E-value=39  Score=37.52  Aligned_cols=160  Identities=9%  Similarity=0.121  Sum_probs=79.5

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhc-cCC--CCC--cceEEEecCceeeEEEEeCCC-CCh----HHHHHHHhh-
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLS-SEG--TGA--LSSTVSSSKYRLRTSVLQAPH-GDL----VGCMEMAKV-  144 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~-~~~--~~~--g~~tv~~~r~k~Ritfie~~~-~dl----~~~LD~aKv-  144 (795)
                      +....-|+|+|-++.+.. ++++.|+.... ..+  ...  .+.++.......++++|..|- .+.    ...++.+|. 
T Consensus        35 ~~~~~rIllvGktGVGKS-SliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKS-STVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             cccceEEEEECCCCCCHH-HHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            445667899999998875 66444443211 011  111  222222111246899998874 111    124555553 


Q ss_pred             -----hceEEEeeeCCCccccccccccChHHHHHHHHHHhc-C---CCceEEEeccCCcchhhhHHHHHHHHhhcccccC
Q 003796          145 -----ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-G---LPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFP  215 (795)
Q Consensus       145 -----ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G---~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~  215 (795)
                           .|+||++.+....       -++..-..+|..|+.. |   .-.+|.|+||-+...-.-    ..+..|+.    
T Consensus       114 l~~~g~DvVLyV~rLD~~-------R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~----~~~e~fv~----  178 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAY-------RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG----LEYNDFFS----  178 (313)
T ss_pred             hhcCCCCEEEEEeccCcc-------cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC----CCHHHHHH----
Confidence                 8899999543210       1333333444444432 3   346788899976300000    01111111    


Q ss_pred             CCCeeEEeCCHHHHHHHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796          216 EDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDV  260 (795)
Q Consensus       216 ~~~Klf~l~~~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~  260 (795)
                              .....+.+++|..+..+.. ..-.-..|.+|+|+..-
T Consensus       179 --------~~~~~lq~~i~~~~~~~~~-~~~~~~~pv~lven~~~  214 (313)
T TIGR00991       179 --------KRSEALLRVIHSGAGLKKR-DYQDFPIPVALVENSGR  214 (313)
T ss_pred             --------hcHHHHHHHHHHHhccccc-ccccccCCEEEEecCCc
Confidence                    1255567888877664432 11123457777777543

>PLN00223 ADP-ribosylation factor; Provisional

Probab=81.89  E-value=10  Score=38.00  Aligned_cols=100  Identities=14%  Similarity=0.090  Sum_probs=57.9

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccC-C----CCCcce--EEEecCceeeEEEEeCCCCC--hHHHHH-HHhhhceEEE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSE-G----TGALSS--TVSSSKYRLRTSVLQAPHGD--LVGCME-MAKVADLVAF  150 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~-~----~~~g~~--tv~~~r~k~Ritfie~~~~d--l~~~LD-~aKvADlVll  150 (795)
                      =|+++|+++++.. +|    +..|+.. .    .+.|..  ++...  ..++.++.++ ..  +..+.. ..+-||.+|+
T Consensus        19 ki~ivG~~~~GKT-sl----~~~l~~~~~~~~~pt~g~~~~~~~~~--~~~~~i~D~~-Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         19 RILMVGLDAAGKT-TI----LYKLKLGEIVTTIPTIGFNVETVEYK--NISFTVWDVG-GQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             EEEEECCCCCCHH-HH----HHHHccCCCccccCCcceeEEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhccCCEEEE
Confidence            4899999998886 66    4444321 1    111321  22222  3567778776 43  334433 3577999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~  194 (795)
                      |+|++..      ..|+..-.++-..++...++  .++.|.+..|.
T Consensus        91 V~D~s~~------~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl  130 (181)
T PLN00223         91 VVDSNDR------DRVVEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
T ss_pred             EEeCCcH------HHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCC
Confidence            9999852      33555444555555444333  34556788775

>COG1084 Predicted GTPase [General function prediction only]

Probab=81.84  E-value=10  Score=41.99  Aligned_cols=107  Identities=19%  Similarity=0.285  Sum_probs=69.0

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--cceE---EEec---CceeeEEEEeCCC---------CC--hHH
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSST---VSSS---KYRLRTSVLQAPH---------GD--LVG  137 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g~~t---v~~~---r~k~Ritfie~~~---------~d--l~~  137 (795)
                      .-|- |+|-|+|+.+.+ ||    ++.+|.-..+.  -|.|   |.+|   +.--|+++|.-|-         |+  .++
T Consensus       167 ~~pT-ivVaG~PNVGKS-Sl----v~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA  240 (346)
T COG1084         167 DLPT-IVVAGYPNVGKS-SL----VRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA  240 (346)
T ss_pred             CCCe-EEEecCCCCcHH-HH----HHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence            3444 567788888775 78    89998876553  2333   2222   2224999998763         33  367


Q ss_pred             HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++-+.=++|+|||++|.|..+-    +.+|++ ..++.-+...=-+.++.|++.+|.
T Consensus       241 i~AL~hl~~~IlF~~D~Se~cg----y~lE~Q-~~L~~eIk~~f~~p~v~V~nK~D~  292 (346)
T COG1084         241 ILALRHLAGVILFLFDPSETCG----YSLEEQ-ISLLEEIKELFKAPIVVVINKIDI  292 (346)
T ss_pred             HHHHHHhcCeEEEEEcCccccC----CCHHHH-HHHHHHHHHhcCCCeEEEEecccc
Confidence            8889999999999999884310    233444 344444443322678899999985

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=80.76  E-value=21  Score=34.92  Aligned_cols=101  Identities=12%  Similarity=0.045  Sum_probs=57.7

Q ss_pred             EEEecCCCccChhhHHHHHHHhhcc-CCCCC----c----ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSS-EGTGA----L----SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~-~~~~~----g----~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll  150 (795)
                      |+++|.++.+.. +|    +..+.. .-...    +    ..++..+....++.++.++-. .+..+.. .++-||.+|+
T Consensus         3 ~~i~G~~~~GKt-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~   77 (173)
T cd04130           3 CVLVGDGAVGKT-SL----IVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLL   77 (173)
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEE
Confidence            789999998876 66    443322 11111    1    123344444578888988731 2333322 3467999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      ++|.+.-      ..|+.-...++..++..  ++| ++.|.++.|.
T Consensus        78 v~d~~~~------~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  116 (173)
T cd04130          78 CFSVVNP------SSFQNISEKWIPEIRKHNPKAP-IILVGTQADL  116 (173)
T ss_pred             EEECCCH------HHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhh
Confidence            9998842      23544333456555542  443 4666787774

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	795
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 83/571 (14%), Positives = 164/571 (28%), Gaps = 181/571 (31%)

Query: 52  QRNKMLRDQK--------RLALLKEKRASSGIASPPRVIVLFG--------LSASV---- 91
           QR+++  D +        RL    + R +     P + +++ G        ++  V    
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 92  -------------NLNSVRED---------LLRQLSSEGTGALSSTVS------SSKYRL 123
                        NL +             LL Q+    T     + +      S +  L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 124 RTSVLQAPHGD--LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG 181
           R  +   P+ +  LV       + +    V +A +          ++F   C    + L 
Sbjct: 235 RRLLKSKPYENCLLV-------LLN----VQNAKA---------WNAFNLSC----KIL- 269

Query: 182 LPSTAVLIRDLP-TDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
                +  R    TD         + +   +     D      + K  L K+L   + Q 
Sbjct: 270 -----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD------EVKSLLLKYLDC-RPQD 317

Query: 241 LTVPHWRNQR-PFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQL 299
           L  P       P  ++    ++A+    G  T     +   +C  +  ++  S       
Sbjct: 318 L--PREVLTTNPRRLS----IIAESIRDGLAT--WDNWKHVNCDKLTTIIESS------- 362

Query: 300 GKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQT- 358
             + +L+   P   RK            L V                 +   P       
Sbjct: 363 --LNVLE---PAEYRK--------MFDRLSVFP--------------PSAHIP---TILL 392

Query: 359 ---W---PTEAEMAEADQN------QKHRKQKKRALP------RGTSEYQAAW---IVDD 397
              W        M   ++       +K  K+   ++P      +   E + A    IV D
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV-D 451

Query: 398 SDEADSDSDNDADDGMVLDQEDR---GFPGY--EGTNNSDIDDD--QASLNFRYADDGTE 450
                   D+   D ++    D+      G+  +   + +         L+FR+ +    
Sbjct: 452 HYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 451 NDSVMME--GEIL-TREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKS 507
           +DS      G IL T +Q++     I +   + E   + +           F        
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---------LDFLPKIEENL 559

Query: 508 FRTSSWD-PKESLPPEYARIFAFDKFTRTQK 537
             +   D  + +L  E   IF  +   + Q+
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFE-EAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 5e-06
 Identities = 93/612 (15%), Positives = 176/612 (28%), Gaps = 153/612 (25%)

Query: 125 TSVLQAPHGDLVGCMEMAKVADL-VAFVASA--SSFSEESMSYYIDSFGNQCLSVFRSLG 181
           T   Q  + D++   E A V +     V     S  S+E + + I S  +      R   
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAVSGTLRLFW 69

Query: 182 LPSTAVLIRDLPTDLKKR--KDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQ 239
                  +     ++ ++  +++ ++    L S    + +  +  T+        ++ EQ
Sbjct: 70  T------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR--------MYIEQ 115

Query: 240 RLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQL 299
           R     + + + F    K +V     +  +  L L   L    L   + V I G      
Sbjct: 116 R--DRLYNDNQVF---AKYNV-----SRLQPYLKLRQALLE--LRPAKNVLIDGVLGS-- 161

Query: 300 GK----IEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPL--KLEPLLVENVPDPL 353
           GK    +++          K    M+  +I  L +    SP+ +   L+ LL +  P+  
Sbjct: 162 GKTWVALDVCLS------YKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 354 AGEQTWPTEAEMAEADQNQKHRKQKKRALPRG---TSEYQAAWIVD-------------D 397
           +             + Q +  R  K +            Q A   +              
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 398 SDEADSDSDNDADDGMVLDQEDRGFPGYEGTN------NSDIDD--DQA--------SL- 440
               D  S       + LD         E  +      +    D   +         S+ 
Sbjct: 275 KQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 441 ------------NFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVD 488
                       N+++ +       +     +L       E +K+ +  +    FP    
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSV---FPPSAH 386

Query: 489 TPLDVPAR--------------KRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDK 531
            P  + +                +  KY  ++        PKE   S+P  Y  +    +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK------QPKESTISIPSIYLELKVKLE 440

Query: 532 FTRTQKH-VFANALKMEQE-NMDDSVPASL--YVRLHIKEVPAGIAHRL--CEMAERSPL 585
                 H    +   + +  + DD +P  L  Y   H       I H L   E  ER  L
Sbjct: 441 -NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-------IGHHLKNIEHPERMTL 492

Query: 586 IASGLLQHESKMSVLHFSVKK--HDTY--DAPIKAKEELIFHVGFRQFVARPIFSSDNMN 641
                L          F  +K  HD+   +A       L     ++ +    I  +D   
Sbjct: 493 FRMVFLD-------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPKY 541

Query: 642 SDKHK-MERFLH 652
                 +  FL 
Sbjct: 542 ERLVNAILDFLP 553

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	795
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.94
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.72
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.64
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.56
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.41
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.39
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.28
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.15
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.67
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.57
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.55
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.43
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.4
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.37
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.16
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.15
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.06
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.05
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	96.94
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	96.94
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	96.86
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	96.84
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.83
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.42
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.37
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.22
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.16
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.94
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.93
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	95.91
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	95.9
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	95.82
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.71
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	95.64
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.59
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.44
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.27
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.18
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.14
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.06
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.9
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.75
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	94.67
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.62
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.6
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	94.48
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.48
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.47
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	94.36
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.18
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	94.05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	93.9
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.83
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	93.78
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	93.76
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.71
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.7
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	93.66
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	93.64
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	93.56
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.54
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	93.46
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.45
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.28
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.13
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.1
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	93.05
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	92.99
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.95
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.95
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.92
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.85
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.81
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.65
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.61
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	92.55
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.52
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	92.35
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.26
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	92.23
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.22
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.2
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	92.19
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.17
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.13
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.13
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	92.11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.09
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.08
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	92.05
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.02
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	92.0
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	91.97
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	91.91
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.85
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.85
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	91.81
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.79
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.75
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	91.7
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	91.7
3llu_A	196	RAS-related GTP-binding protein C; structural geno	91.48
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.48
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.47
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	91.38
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.31
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.29
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	91.29
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.25
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	91.16
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	91.13
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.12
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.11
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.09
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	90.94
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	90.62
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	90.57
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	90.5
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.43
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	90.29
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	90.16
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.11
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.07
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	89.86
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	89.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	89.68
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	89.38
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	89.37
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	89.35
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	89.34
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	89.25
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	89.24
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	89.21
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	89.15
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	89.09
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	88.87
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	88.22
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	88.17
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	88.11
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	88.05
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	87.52
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	87.43
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	87.04
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	86.92
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	86.92
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	86.51
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	86.49
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	86.41
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	86.22
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	85.99
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	85.74
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	85.47
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	85.15
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	84.99
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	84.69
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	84.49
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	84.43
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	84.0
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	83.56
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	83.39
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	82.97
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	82.81
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	82.71
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	82.19
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	81.93
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	81.88
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	81.54
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	81.54
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	81.25
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	80.63
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	80.23

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.94  E-value=5.6e-26  Score=259.93  Aligned_cols=167  Identities=14%  Similarity=0.183  Sum_probs=136.1

Q ss_pred             CcccCCCCCeEEEEeeeeeeeeeeeecc---CCCCCCceEEecccCCCce--EEEEEEeecCCCCccEEEEEeCCC-CCC
Q 003796          610 YDAPIKAKEELIFHVGFRQFVARPIFSS---DNMNSDKHKMERFLHAGCF--SVASIYAPICFPPLPLIVLKSADG-GVA  683 (795)
Q Consensus       610 ~~~~lKSkdpLi~s~GwRRFq~~PifS~---~~~~~~r~k~~ky~~~~~~--~~AtfygPi~~~~t~vl~f~~~~~-~~~  683 (795)
                      ++.||++..++.|+||..+-.+....-.   -|.+ +.+...+++.++..  |...+-.|+++.+.+-++++.... ...
T Consensus       303 ~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~-~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~  381 (482)
T 1wb1_A          303 FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKT-EENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTT  381 (482)
T ss_dssp             CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSC-CCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTS
T ss_pred             CCcccCCCCEEEEEEcccEEEEEEEEEeccccccc-cccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccC
Confidence            3589999999999999999887764422   1333 34555677877754  555666999988766666766211 134


Q ss_pred             CeEEEEeEEeccCCcceeEEeEEEEeeeeE-----EeeeeEEEeecCCChhhccccccceeeecccc-cceeeCCCCCCc
Q 003796          684 PAVAAVGSLRSIDPDRIILKKIVLTGYPQR-----VSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGR-RGRIKEPVGTHG  757 (795)
Q Consensus       684 ~ri~atG~vl~~d~~r~IvKklkLtG~P~K-----I~K~tA~Ir~MF~n~~dV~~Fk~a~L~TksGi-rG~IK~~lgt~G  757 (795)
                      .|.+|.|.|+++.+    +|+++|...+.|     ++++||+||+||++..|++||+|.+|+|++|. +|+||.|+|++|
T Consensus       382 ~~tvg~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg~~G  457 (482)
T 1wb1_A          382 LRIXGHGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKG  457 (482)
T ss_dssp             CCCCCBCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTTTT
T ss_pred             ceEeeEEEEEeccc----chhceeeehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCCCCc
Confidence            79999999999977    566666555555     78899999999999999999999999999999 999999999999


Q ss_pred             eeEEEeccccccccEEEEecceee
Q 003796          758 AMKCVFNGILQQRDTVCMSLYKRA  781 (795)
Q Consensus       758 ~fka~Fe~~i~~~D~V~m~lykrv  781 (795)
                      +|||+|+++|.++|+|||++|||+
T Consensus       458 ~~~~~f~~~~~~~d~v~~~~~~~~  481 (482)
T 1wb1_A          458 LLTAEFSGNVENRDKVILNRLRRW  481 (482)
T ss_dssp             BBCCCBSSCCCSSCEEEEECCCSC
T ss_pred             eEEEEecCCCCCCCeeeeehhhcc
Confidence            999999999999999999999994

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.72  E-value=5.3e-07  Score=100.48  Aligned_cols=206  Identities=12%  Similarity=0.103  Sum_probs=143.5

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--c----------------ceEEEe----------cCceeeEEE
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--L----------------SSTVSS----------SKYRLRTSV  127 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g----------------~~tv~~----------~r~k~Ritf  127 (795)
                      ..+++.|+++|.++.++. +|    ++.|++.....  |                .++...          ...+++++|
T Consensus         5 ~~~~~~I~vvG~~~~GKS-TL----i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKT-TL----VQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF   79 (403)
T ss_dssp             CCCCCEEEEECSTTSSHH-HH----HHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred             cCCCcEEEEECCCCCCHH-HH----HHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEE
Confidence            457788999999998886 77    55554422111  0                111100          112379999


Q ss_pred             EeCCC--CChHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHH
Q 003796          128 LQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLK  203 (795)
Q Consensus       128 ie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~k  203 (795)
                      +.+|-  .-...|+..+..||.+|||+|++.|        + ...+.+.|..++..|.+.++.|++..|. +........
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~--------~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~  151 (403)
T 3sjy_A           80 IDAPGHEVLMATMLSGAALMDGAILVVAANEP--------FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY  151 (403)
T ss_dssp             EECCCCGGGHHHHHHHHTTCSEEEEEEETTSC--------SSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------CCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHH
Confidence            99983  2256788999999999999999965        4 5678999999999999889999999885 212233455


Q ss_pred             HHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC--CCCCceEEEEEEEe
Q 003796          204 KMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC--NSGKCTLLLHGYLR  279 (795)
Q Consensus       204 K~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~--~~~~~~l~v~GyvR  279 (795)
                      +.++.++......+..+|.+|.  -..+..|...|...-+.+-...+..+.|.+++.-......  -+..+-.+++|.|.
T Consensus       152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~  231 (403)
T 3sjy_A          152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSII  231 (403)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEE
Confidence            5666666655566788999995  3456778888877666677777888899998865432211  11223356899999


Q ss_pred             CCCCCCCCeEEe-CCC
Q 003796          280 AHCLSVNQLVHI-SGA  294 (795)
Q Consensus       280 G~~l~~n~lVHI-pG~  294 (795)
                      ...+++|..|+| ||.
T Consensus       232 ~G~~~~gd~v~~~p~~  247 (403)
T 3sjy_A          232 QGLFKVDQEIKVLPGL  247 (403)
T ss_dssp             ESCEETTCEEEEEEEE
T ss_pred             eCEEecCCEEEEeCCc
Confidence            888999999998 653

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.64  E-value=5.2e-07  Score=100.40  Aligned_cols=210  Identities=13%  Similarity=0.074  Sum_probs=144.5

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccC-----------C---CC-CcceEEE-----ecCceeeEEEEeCCCCC---
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSE-----------G---TG-ALSSTVS-----SSKYRLRTSVLQAPHGD---  134 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~-----------~---~~-~g~~tv~-----~~r~k~Ritfie~~~~d---  134 (795)
                      |+.-|+|+|..+.++. +|++.|.......           +   .+ ...+|+.     ......+++|+.+| .-   
T Consensus         2 ~~~~I~iiG~~~~GKS-TLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtp-G~~~f   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKT-TLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCP-GHADY   79 (397)
T ss_dssp             CEEEEEEESSTTSSHH-HHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECS-SHHHH
T ss_pred             CeEEEEEEeCCCCCHH-HHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECC-ChHHH
Confidence            4567999999987775 6655545432111           0   00 1223432     12224789999998 43   


Q ss_pred             hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hhhh-HHHHHHHHhhccc
Q 003796          135 LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKKR-KDLKKMCISSLTS  212 (795)
Q Consensus       135 l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~Kk~-~~~kK~lk~~f~~  212 (795)
                      +..|+..+..||.+|||+|++.|        ...++.+.|..++..|+|.++.|++.+|.. ...+ ..++..++.++..
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~  151 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE  151 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHhhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence            45678888999999999999965        567889999999999999999999988851 1111 2234444444433


Q ss_pred             c-cC-CCCeeEEeCCHH-----------H-HHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEE
Q 003796          213 E-FP-EDCKFYAADTKD-----------E-LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYL  278 (795)
Q Consensus       213 e-f~-~~~Klf~l~~~~-----------E-~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gyv  278 (795)
                      . +. ....+|+.|..+           . +..|+..|...-+.|..+.+...+|.++++-..+.      .-.+++|.|
T Consensus       152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~------~G~v~~g~v  225 (397)
T 1d2e_A          152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPG------RGTVVTGTL  225 (397)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETT------TEEEEEEEC
T ss_pred             cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCC------ceEEEEEEE
Confidence            2 21 246788888544           2 78899999887777777777778888888776542      345688999


Q ss_pred             eCCCCCCCCeEEeCCCCc---eeeceee
Q 003796          279 RAHCLSVNQLVHISGAGD---FQLGKIE  303 (795)
Q Consensus       279 RG~~l~~n~lVHIpG~GD---fqi~~I~  303 (795)
                      ....|++|..|++.|.|+   .+|.+|.
T Consensus       226 ~~G~l~~gd~v~~~~~~~~~~~~V~~i~  253 (397)
T 1d2e_A          226 ERGILKKGDECEFLGHSKNIRTVVTGIE  253 (397)
T ss_dssp             CBSEEETTCEEEEEETTEEEEEEEEEEE
T ss_pred             eeceEeCCCEEEEeCCCCCeEEEEEEEE
Confidence            999999999999988874   3444443

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.56  E-value=1e-06  Score=98.23  Aligned_cols=160  Identities=14%  Similarity=0.133  Sum_probs=117.4

Q ss_pred             eeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796          123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK  197 (795)
Q Consensus       123 ~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K  197 (795)
                      .+++|+.+| ..   +..|+..+..||.+|||+||+.|        + ...+++.|.+++..|++.++.|++.+|. +..
T Consensus        83 ~~i~iiDtP-Gh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~  153 (410)
T 1kk1_A           83 RRVSFIDAP-GHEALMTTMLAGASLMDGAILVIAANEP--------CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE  153 (410)
T ss_dssp             EEEEEEECS-SHHHHHHHHHHCGGGCSEEEEEEETTSC--------SSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred             cEEEEEECC-ChHHHHHHHHhhhhhCCEEEEEEECCCC--------CCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence            789999998 43   45678888999999999999964        5 6789999999999999999999999885 212


Q ss_pred             hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC--CCCCceEE
Q 003796          198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC--NSGKCTLL  273 (795)
Q Consensus       198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~--~~~~~~l~  273 (795)
                      ........++.++......+..+|.+|.  ...+..|+..|...-+.|..+.+..+.|.+++.-......  -++..-.+
T Consensus       154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v  233 (410)
T 1kk1_A          154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGV  233 (410)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCE
T ss_pred             HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEE
Confidence            2223445566666655555788999984  3457778888887667777788888889888865432111  01112246


Q ss_pred             EEEEEeCCCCCCCCeEEe
Q 003796          274 LHGYLRAHCLSVNQLVHI  291 (795)
Q Consensus       274 v~GyvRG~~l~~n~lVHI  291 (795)
                      ++|.|....|++|..|.+
T Consensus       234 ~~g~v~~G~l~~gd~v~~  251 (410)
T 1kk1_A          234 LDGSIVQGKLKVGDEIEI  251 (410)
T ss_dssp             EEEEEEESCEETTCEEEE
T ss_pred             EEEEEEeCeEeeCCEEEE
Confidence            889888888999998887

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.41  E-value=3.8e-06  Score=93.67  Aligned_cols=161  Identities=12%  Similarity=0.125  Sum_probs=111.4

Q ss_pred             eeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chhh
Q 003796          123 LRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKK  198 (795)
Q Consensus       123 ~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk  198 (795)
                      ++++|+.+|- .+ ...|+..+..||.+|||+|++.|        + ...+++.|.+++..|++.++.|++..|. +...
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~  152 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP--------CPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ  152 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC--------SSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC--------CCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence            7899999983 12 34567778889999999999954        5 6789999999999999999999999885 2111


Q ss_pred             hHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCC--CCCceEEE
Q 003796          199 RKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCN--SGKCTLLL  274 (795)
Q Consensus       199 ~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~--~~~~~l~v  274 (795)
                      .......++.++......+..+|++|.  -..+..|...|...-+.|-.+.+..+.|.+++.-.+.....  +..+-.++
T Consensus       153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~  232 (408)
T 1s0u_A          153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVL  232 (408)
T ss_dssp             TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEE
T ss_pred             HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEE
Confidence            112333444444443344678999885  34467788888776666777778888888887643321110  01123478


Q ss_pred             EEEEeCCCCCCCCeEEe
Q 003796          275 HGYLRAHCLSVNQLVHI  291 (795)
Q Consensus       275 ~GyvRG~~l~~n~lVHI  291 (795)
                      +|.|....|++|..|++
T Consensus       233 ~g~v~~G~l~~gd~v~~  249 (408)
T 1s0u_A          233 GGAIIQGVFKVGDEIEI  249 (408)
T ss_dssp             EEEEEESCEETTCEEEE
T ss_pred             EEEEEECeEecCCEEEE
Confidence            99999989999999988

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.39  E-value=1.5e-05  Score=88.81  Aligned_cols=215  Identities=13%  Similarity=0.073  Sum_probs=139.1

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCC------------CC----C-c----ceEEEecCceeeEEEEeCCC-C
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------------TG----A-L----SSTVSSSKYRLRTSVLQAPH-G  133 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------------~~----~-g----~~tv~~~r~k~Ritfie~~~-~  133 (795)
                      ..+.+-|+|+|.++.++. +|++.|...+....            ..    . |    ...+.......+++|+.+|- .
T Consensus         8 ~~~~~~I~iiG~~~~GKS-TLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKT-TLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             -CCEEEEEEECSTTSSHH-HHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCeEEEEEEcCCCCCHH-HHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            345677999999987775 66555555321111            00    0 1    11222222247899999973 2


Q ss_pred             C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hhhh-HHHHHHHHhhc
Q 003796          134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKKR-KDLKKMCISSL  210 (795)
Q Consensus       134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~Kk~-~~~kK~lk~~f  210 (795)
                      + ...|+..+..||.+|||+|++.|        ....+.+.|..+...|+|.++.|++.+|.. .... ..++..++.++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l  158 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  158 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTC--------CCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence            3 45788889999999999999965        556789999999999999999999988851 1111 22344444444


Q ss_pred             ccccC--CCCeeEEeCCHHH--------------------HHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCC
Q 003796          211 TSEFP--EDCKFYAADTKDE--------------------LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSG  268 (795)
Q Consensus       211 ~~ef~--~~~Klf~l~~~~E--------------------~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~  268 (795)
                      ...-.  ....+|..|..+.                    +..|+..|...-+.|..--+...-|.++++-..+.     
T Consensus       159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~-----  233 (405)
T 2c78_A          159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG-----  233 (405)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETT-----
T ss_pred             HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCC-----
Confidence            33211  2467888884322                    66788888775554543333344455666554432     


Q ss_pred             CceEEEEEEEeCCCCCCCCeEEeCCCCc----eeeceeecc
Q 003796          269 KCTLLLHGYLRAHCLSVNQLVHISGAGD----FQLGKIEIL  305 (795)
Q Consensus       269 ~~~l~v~GyvRG~~l~~n~lVHIpG~GD----fqi~~I~~~  305 (795)
                       .-.+++|.|....|++|..|.+.+.|+    .+|.+|...
T Consensus       234 -~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~  273 (405)
T 2c78_A          234 -RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH  273 (405)
T ss_dssp             -TEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET
T ss_pred             -CceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC
Confidence             345678999999999999999988884    677777643

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.28  E-value=1.6e-05  Score=98.22  Aligned_cols=218  Identities=12%  Similarity=0.114  Sum_probs=144.3

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CC---CC-CcceEEE-----ecCceeeEEEEeCCCCC-
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EG---TG-ALSSTVS-----SSKYRLRTSVLQAPHGD-  134 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~---~~-~g~~tv~-----~~r~k~Ritfie~~~~d-  134 (795)
                      ..+.+-|+|+|..+.++. +|++.|......           .+   .+ ..-+|+.     ....+.+++|+.+| .- 
T Consensus       293 ~k~~lnIvIIGhvDvGKS-TLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTP-GHe  370 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKT-TLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCP-GHA  370 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHH-HHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECC-CHH
T ss_pred             cCCeeEEEEEcCCCCCHH-HHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECC-ChH
Confidence            456677999999987765 565554543210           01   00 1122221     12235789999998 43 


Q ss_pred             --hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhc
Q 003796          135 --LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSL  210 (795)
Q Consensus       135 --l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f  210 (795)
                        +..|+..++.||.+|||+|++.|        ...++.+.|..++..|+|.+|.|++.+|. +...+ ..++..++.++
T Consensus       371 dF~~~mi~gas~AD~aILVVDAtdG--------v~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL  442 (1289)
T 3avx_A          371 DYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELL  442 (1289)
T ss_dssp             HHHHHHHHTSCCCSEEEEEEETTTC--------SCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCEEEEEEcCCcc--------CcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence              34577778899999999999965        45578889999999999999999999886 11111 22344444444


Q ss_pred             ccc-c-CCCCeeEEeCCHH----------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEE
Q 003796          211 TSE-F-PEDCKFYAADTKD----------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYL  278 (795)
Q Consensus       211 ~~e-f-~~~~Klf~l~~~~----------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gyv  278 (795)
                      ... + +....++++|..+          .+..|+..|...-+.|....+....|.++++-.++.      .-.+++|.|
T Consensus       443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G------~GtVvtGrV  516 (1289)
T 3avx_A          443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISG------RGTVVTGRV  516 (1289)
T ss_dssp             HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETT------TEEEEEEEC
T ss_pred             HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccccccceeeeccccccccC------CcEEEEEEE
Confidence            332 2 1246788888543          377888888876666655545555666777665432      345688999


Q ss_pred             eCCCCCCCCeEEeCCCCc---eeeceeeccCCCC
Q 003796          279 RAHCLSVNQLVHISGAGD---FQLGKIEILKDPF  309 (795)
Q Consensus       279 RG~~l~~n~lVHIpG~GD---fqi~~I~~~~dP~  309 (795)
                      ....|++|..|+|.|.|+   .+|.+|.....|+
T Consensus       517 ~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v  550 (1289)
T 3avx_A          517 ERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLL  550 (1289)
T ss_dssp             CBSEEETTCEEEEESSSSCEEEEEEEEECSSCEE
T ss_pred             eccEEecCCEEEEecCCCceeEEEEEEeecCcee
Confidence            999999999999999985   6888887665443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.15  E-value=2.8e-06  Score=99.35  Aligned_cols=173  Identities=16%  Similarity=0.170  Sum_probs=106.6

Q ss_pred             eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCcccccccccc--ChHHHHHHHHHHhcCCCceEEEeccCCc-c
Q 003796          122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI--DSFGNQCLSVFRSLGLPSTAVLIRDLPT-D  195 (795)
Q Consensus       122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~f--e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~  195 (795)
                      .++++|+.+| .-   +..|+..+..||++|||+|++.|.   .+.+|  ...+.+.+.++...|+|.+|.|++.+|. +
T Consensus       254 ~~~i~iiDTP-Gh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 KKIYEIGDAP-GHRDFISGMIAGASSADFAVLVVDSSQNN---FERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEE-SSSEEEEECCC-------CCSEEEEEECC---SSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred             CeEEEEEECC-ChHHHHHHHHHHHhhCCEEEEEEECCCCc---cccccccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence            3678888887 42   456778889999999999998651   01246  7789999999999999999999999885 1


Q ss_pred             --hhhhHHHHHHHHhhc-ccc-c-CCCCeeEEeCCHHH--H--------------HHHHHHHhhccccCcccccCCCeEE
Q 003796          196 --LKKRKDLKKMCISSL-TSE-F-PEDCKFYAADTKDE--L--------------HKFLWLFKEQRLTVPHWRNQRPFLM  254 (795)
Q Consensus       196 --~Kk~~~~kK~lk~~f-~~e-f-~~~~Klf~l~~~~E--~--------------~nL~R~Is~~k~r~l~WR~~rpYmL  254 (795)
                        ......+++.++.++ ... + +.+..++++|..+-  +              ..|+..|....+ |-...+....|.
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~  408 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLS  408 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchhe
Confidence              112234666677666 221 1 12346888873111  1              146666665544 333334445566


Q ss_pred             EEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 003796          255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK  306 (795)
Q Consensus       255 adr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~  306 (795)
                      ++++-.. .      +...++|.|....|++|..|+|.+.| ...|.+|..-.
T Consensus       409 v~~v~~~-~------~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~  454 (592)
T 3mca_A          409 IDDVYRS-P------RSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNS  454 (592)
T ss_dssp             EEEEEEE-T------TEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSS
T ss_pred             eeEEEec-C------CeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcC
Confidence            7776543 2      35678999998889999999996665 56777777543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.67  E-value=0.00044  Score=76.23  Aligned_cols=201  Identities=12%  Similarity=0.135  Sum_probs=125.1

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC--cceEEEecCceeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCC
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSSTVSSSKYRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASS  156 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g~~tv~~~r~k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~  156 (795)
                      .|+++|.++.++. +|    +..|+....+.  +...+...  +.+++|+.+|- .+ +..|+..++.||.+|||+| ..
T Consensus        23 ~i~iiG~~d~GKS-TL----~~~L~~~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~   94 (370)
T 2elf_A           23 NVAIIGTEKSGRT-SL----AANLGKKGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ   94 (370)
T ss_dssp             EEEEEESTTSSHH-HH----HHTTSEEEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT
T ss_pred             EEEEECCCCCCHH-HH----HHHHHhCCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC
Confidence            7999999998875 67    66665332221  33333333  46799999973 23 5688999999999999999 75


Q ss_pred             ccccccccccChHHHHHHHHHHhcCCCceEEEec-cCCcchhh-hHHHHHHHHhhcccccCCCCeeEE--eCCHH-----
Q 003796          157 FSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIR-DLPTDLKK-RKDLKKMCISSLTSEFPEDCKFYA--ADTKD-----  227 (795)
Q Consensus       157 g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~-~Ld~~~Kk-~~~~kK~lk~~f~~ef~~~~Klf~--l~~~~-----  227 (795)
                      |        ...++.+.+..++..|+|.+|.|++ .+|. ... ...+...++.++...-.....+|+  .|..+     
T Consensus        95 g--------~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           95 G--------LDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             C--------CCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             C--------CcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence            4        6778999999999999999888888 7776 222 233455666666543334568888  77543     


Q ss_pred             HHHHHHHHHhhccccC--cc---cccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeece
Q 003796          228 ELHKFLWLFKEQRLTV--PH---WRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGK  301 (795)
Q Consensus       228 E~~nL~R~Is~~k~r~--l~---WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~  301 (795)
                      -+..|...|...-+.+  ..   .+ .-..++++++-.++.     .|+ .++|.|....+++|..|.+...| ...|.+
T Consensus       166 gi~~L~~~l~~~~~~~~~~~~~~~~-~p~r~~v~~vf~~~~-----~G~-v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~  238 (370)
T 2elf_A          166 GVDELKARINEVAEKIEAENAELNS-LPARIFIDHAFNVTG-----KGC-VVLGVVKQGISKDKDKTKIFPLDRDIEIRS  238 (370)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHGGG-SCCEEEEEEEECCC--------C-EEEEEEEESEEETTCEEEEETTTEEEEEEE
T ss_pred             CHHHHHHHHHhhccccccCCccccc-ccccccceeEEEcCC-----Cce-EEEEEEECCEEeeCCEEEECCCCcEEEEeE
Confidence            2334444443322211  00   00 001334555443321     344 56787777779999998876655 556666


Q ss_pred             eecc
Q 003796          302 IEIL  305 (795)
Q Consensus       302 I~~~  305 (795)
                      |...
T Consensus       239 i~~~  242 (370)
T 2elf_A          239 IQSH  242 (370)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            6543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.57  E-value=0.0025  Score=71.45  Aligned_cols=170  Identities=11%  Similarity=0.095  Sum_probs=105.8

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-h
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-K  197 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-K  197 (795)
                      ..+++|+.+|- .+ ...|+..+..||.+|||+|++.|        +...+.+.|.++...|+|.++.|++..|. +. .
T Consensus       103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g--------~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~  174 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG--------VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDE  174 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCH
T ss_pred             CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccH
Confidence            46899999973 23 35678889999999999999965        55678889999999999999999999986 11 1


Q ss_pred             h-hHHHHHHHHhhccccc--CCCCeeEEeCCHHH--HH------------HHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796          198 K-RKDLKKMCISSLTSEF--PEDCKFYAADTKDE--LH------------KFLWLFKEQRLTVPHWRNQRPFLMAQKVDV  260 (795)
Q Consensus       198 k-~~~~kK~lk~~f~~ef--~~~~Klf~l~~~~E--~~------------nL~R~Is~~k~r~l~WR~~rpYmLadr~e~  260 (795)
                      . ...++..++.++...-  .....++.+|..+.  +.            .|...|.... .|-.-.+....|.++.+..
T Consensus       175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~-~~~~~~~~~~~~~v~~v~~  253 (434)
T 1zun_B          175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVE-IASDRNYTDLRFPVQYVNR  253 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSC-CTTCCCSSSCEEECCEEEC
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCC-CcccCCCCCcEEEEEEEec
Confidence            1 1234455555443321  22467788773211  10            0333333332 2222223333444444432


Q ss_pred             ccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 003796          261 VADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK  306 (795)
Q Consensus       261 ~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~  306 (795)
                      ..     ..+.. +.|.|....|++|..|.+.+.| ...|.+|....
T Consensus       254 ~~-----~~~~g-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~  294 (434)
T 1zun_B          254 PN-----LNFRG-FAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE  294 (434)
T ss_dssp             SS-----SSCCE-EEEECCBSCEETTCEEEETTTCCEEEEEEEEETT
T ss_pred             cC-----CCceE-EEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC
Confidence            11     11222 6798988889999999997766 56777776543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.55  E-value=0.0019  Score=73.14  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=107.2

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCcc-h
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPTD-L  196 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~  196 (795)
                      +.+++|+.+|- .+ ...|+..+.-||.+|||+|++.|. +  +..|+  ..+.+.+..+...|+|.++.|++.+|.. +
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~-~--~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE-F--EAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH-H--HHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTT
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCc-c--ccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccC
Confidence            46899999973 33 345778889999999999998541 0  01232  2677888888899999999999998861 1


Q ss_pred             -hh-hHHHHHHHHhhcccccC--CCCeeEEeCCH-----HH---------------------HHHHHHHHhhccccCccc
Q 003796          197 -KK-RKDLKKMCISSLTSEFP--EDCKFYAADTK-----DE---------------------LHKFLWLFKEQRLTVPHW  246 (795)
Q Consensus       197 -Kk-~~~~kK~lk~~f~~ef~--~~~Klf~l~~~-----~E---------------------~~nL~R~Is~~k~r~l~W  246 (795)
                       .. ...++..++.++...-.  ....++++|..     .+                     ...|+..|-... -|-.-
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~-~p~~~  239 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIE-QPSRP  239 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSC-CCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccC-CCccc
Confidence             11 12344555544433211  13567776631     00                     113555555432 22222


Q ss_pred             ccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeec
Q 003796          247 RNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEI  304 (795)
Q Consensus       247 R~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~  304 (795)
                      .+....|.++++-..+.     .| .+++|.|...-+++|..|.+...| ...|.+|..
T Consensus       240 ~~~p~r~~i~~v~~~~g-----~G-~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~  292 (458)
T 1f60_A          240 TDKPLRLPLQDVYKIGG-----IG-TVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEM  292 (458)
T ss_dssp             TTSCCEEEEEEEEEETT-----TE-EEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeCC-----Cc-EEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEE
Confidence            33444566666655432     24 578999999999999999976555 566666664

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.0018  Score=75.99  Aligned_cols=178  Identities=13%  Similarity=0.211  Sum_probs=107.8

Q ss_pred             eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-
Q 003796          122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-  196 (795)
Q Consensus       122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-  196 (795)
                      ..+++|+.+| .-   +..|+..++-||++|||+|++.|. .+..-.+...+.+.+..+...|+|.+|.|++.+|. +. 
T Consensus       244 ~~~~~iiDTP-G~e~f~~~~~~~~~~aD~~llVVDa~~g~-~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          244 RANFTIVDAP-GHRDFVPNAIMGISQADMAILCVDCSTNA-FESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             SCEEEEEECC-SSSCHHHHHTTTSSCCSEEEEEEECSHHH-HHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred             CceEEEEECC-CCcccHHHHHHHHhhcCceEEEEECCCCc-ccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence            4689999997 43   566788889999999999998641 00000124588999999999999999999999995 11 


Q ss_pred             -hhhHHHHHHHHhhccccc--CCCCeeEEeCCH-----HHHH------------HHHHHHhhc---ccc-CcccccCCCe
Q 003796          197 -KKRKDLKKMCISSLTSEF--PEDCKFYAADTK-----DELH------------KFLWLFKEQ---RLT-VPHWRNQRPF  252 (795)
Q Consensus       197 -Kk~~~~kK~lk~~f~~ef--~~~~Klf~l~~~-----~E~~------------nL~R~Is~~---k~r-~l~WR~~rpY  252 (795)
                       .....+++.++.++...=  +.+..+|.+|..     .+..            .|+..|-..   -+. +.......|.
T Consensus       322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~  401 (611)
T 3izq_1          322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF  401 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccch
Confidence             112345666666554321  124678888731     1110            234444333   111 1222334443


Q ss_pred             -EEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeec
Q 003796          253 -LMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEI  304 (795)
Q Consensus       253 -mLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~  304 (795)
                       |.++++-....  ....+ .+++|.|....+++|..|.+...| -..|.+|..
T Consensus       402 r~~V~~v~~~~~--~~g~g-~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~  452 (611)
T 3izq_1          402 LFSVLEIIPSKK--TSNDL-ALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV  452 (611)
T ss_dssp             EEECCEEECCSS--SCSSS-SEEEEEEEESEECTTCEEEETTTTEEEEEEEEEC
T ss_pred             hhheeeeeccCc--cCCCe-eEEEEEEEeceeccCCEEEEecCCceEEEEEEEE
Confidence             44555443211  00123 457899888889999999986655 345555543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.40  E-value=0.006  Score=68.55  Aligned_cols=170  Identities=16%  Similarity=0.141  Sum_probs=107.9

Q ss_pred             eeeEEEEeCCC--CChHHHHHHHhhhceEEEeeeCCCccccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCc---
Q 003796          122 RLRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPT---  194 (795)
Q Consensus       122 k~Ritfie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~---  194 (795)
                      +++++|+.+|-  .-+..|+..+.-||++|||+||+.|. ++  .+|+  ..+.+.|..+...|+|.++.|++.+|.   
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~-~e--~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE-FE--TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc-cc--cccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence            46899999973  22567888899999999999999761 11  1243  578999999999999999999998885   


Q ss_pred             ch--hhhHHHHHHHHhhcccc-cC--CCCeeEEeCC-----HHHHHH---------HHHHHhhccccCcccccCCC-eEE
Q 003796          195 DL--KKRKDLKKMCISSLTSE-FP--EDCKFYAADT-----KDELHK---------FLWLFKEQRLTVPHWRNQRP-FLM  254 (795)
Q Consensus       195 ~~--Kk~~~~kK~lk~~f~~e-f~--~~~Klf~l~~-----~~E~~n---------L~R~Is~~k~r~l~WR~~rp-YmL  254 (795)
                      ++  .....+++.+..++... +.  .+..++++|.     -.+...         |+..|....+ +-. ....| .|.
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~-~~~-~~~~p~r~~  248 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPN-FNR-SVDGPIRLP  248 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCC-Ccc-CCCCCeEEE
Confidence            11  12234555565555332 11  1456888773     233222         5555555332 222 22333 344


Q ss_pred             EEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeec
Q 003796          255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEI  304 (795)
Q Consensus       255 adr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~  304 (795)
                      ++++ +.      ..| ..++|.|....+++|..|.+...| ...|.+|..
T Consensus       249 v~~~-~~------~~G-~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~  291 (439)
T 3j2k_7          249 IVDK-YK------DMG-TVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS  291 (439)
T ss_pred             EEEE-Ec------CCC-eEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE
Confidence            4443 21      134 468899988889999999886555 556666654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.37  E-value=0.0043  Score=70.53  Aligned_cols=178  Identities=12%  Similarity=0.144  Sum_probs=107.9

Q ss_pred             eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-
Q 003796          122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-  196 (795)
Q Consensus       122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-  196 (795)
                      +.+++|+.+| .-   ...|+..+.-||++|||+|++.|.. +..-.+..++.+.+..+...|+|.+|.|++.+|. +. 
T Consensus       110 ~~~~~iiDTP-G~~~f~~~~~~~~~~aD~~llVvDa~~g~~-~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAP-GHRDFVPNAIMGISQADMAILCVDCSTNAF-ESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCC-CCGGGHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECC-CcHHHHHHHHHhhhhCCEEEEEEECCCCcc-ccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccch
Confidence            5789999997 43   5678888999999999999997510 0001145689999999999999999999999885 11 


Q ss_pred             -hhhHHHHHHHHhhccccc--CCCCeeEEeCC-----HH---------------HHHHHHHHHhhcccc--CcccccCCC
Q 003796          197 -KKRKDLKKMCISSLTSEF--PEDCKFYAADT-----KD---------------ELHKFLWLFKEQRLT--VPHWRNQRP  251 (795)
Q Consensus       197 -Kk~~~~kK~lk~~f~~ef--~~~~Klf~l~~-----~~---------------E~~nL~R~Is~~k~r--~l~WR~~rp  251 (795)
                       .....+++.++.++...=  +.+..+|.+|.     -.               .++.++..|...-+.  |-.--+.-.
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~  267 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF  267 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCce
Confidence             112335555555543211  12456777772     11               244555555322111  111123333


Q ss_pred             eEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeec
Q 003796          252 FLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEI  304 (795)
Q Consensus       252 YmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~  304 (795)
                      .|.++++-....  . ...-..++|.|....+++|..|.+...| ...|.+|..
T Consensus       268 r~~v~~v~~~~~--~-~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~  318 (483)
T 3p26_A          268 LFSVLEIIPSKK--T-SNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV  318 (483)
T ss_dssp             EEEEEEEEC-----C-CSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEE
T ss_pred             EEEEEEEEccCC--c-CCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEE
Confidence            455666543221  0 0123568899988889999998876555 455666654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.16  E-value=0.0053  Score=68.87  Aligned_cols=166  Identities=16%  Similarity=0.174  Sum_probs=103.7

Q ss_pred             eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-c--h
Q 003796          122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-D--L  196 (795)
Q Consensus       122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~--~  196 (795)
                      +.+++|+.+|- .++ ..|+-.+..||.+|||+|++.|.-.+ ...+..++.+.+..+...|+|.++.|++.+|. +  +
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~-~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEA-GMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHH-HHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCcccc-ccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            46899999873 343 45788889999999999998641000 00033478899999999999999999998885 1  1


Q ss_pred             -hhh-HHHHHHHHhhcccccC--CCCeeEEeCCHH-----HH---------HHHHHHHhhccccCcccccCCCeEEEEee
Q 003796          197 -KKR-KDLKKMCISSLTSEFP--EDCKFYAADTKD-----EL---------HKFLWLFKEQRLTVPHWRNQRPFLMAQKV  258 (795)
Q Consensus       197 -Kk~-~~~kK~lk~~f~~ef~--~~~Klf~l~~~~-----E~---------~nL~R~Is~~k~r~l~WR~~rpYmLadr~  258 (795)
                       ..+ ..++..++.++...-.  ....++.+|..+     |.         ..|+..|....+ |..-.+...-|.++++
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~-p~~~~~~~~~~~v~~v  240 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLEL-PPKPVDKPLRIPIQDV  240 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCC-CCCGGGSCCBEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCC-CCCCCCCCeEEEEEEE
Confidence             111 3445556655543221  236778777421     11         146666655433 3322233344555655


Q ss_pred             EeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC
Q 003796          259 DVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG  295 (795)
Q Consensus       259 e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G  295 (795)
                      -.++.     .| ..++|.|....|++|..|.+...|
T Consensus       241 ~~~~~-----~G-~v~~g~v~~G~l~~gd~v~~~p~~  271 (435)
T 1jny_A          241 YSISG-----VG-TVPVGRVESGVLKVGDKIVFMPAG  271 (435)
T ss_dssp             EEETT-----TE-EEEEEECCBSCEETTCEEEEETTT
T ss_pred             EEeCC-----Cc-EEEEEEEecCeEEcCCEEEECCce
Confidence            44432     23 567899998889999998876544

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.15  E-value=0.029  Score=65.55  Aligned_cols=166  Identities=8%  Similarity=-0.024  Sum_probs=109.9

Q ss_pred             eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      ..+++|+.+|- .|+ ..+.-.+..||.+|||+||+.|        ....+.+.+..+..+|+| +|.|++.+|......
T Consensus        72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g--------v~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~~  142 (600)
T 2ywe_A           72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG--------IEAQTVANFWKAVEQDLV-IIPVINKIDLPSADV  142 (600)
T ss_dssp             EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB--------CCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCCH
T ss_pred             eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHCCCC-EEEEEeccCccccCH
Confidence            36888999873 233 3466778999999999999965        677888888888899999 788899888511222


Q ss_pred             HHHHHHHHhhcccccCCCCeeEEeCCH--HHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 003796          200 KDLKKMCISSLTSEFPEDCKFYAADTK--DELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY  277 (795)
Q Consensus       200 ~~~kK~lk~~f~~ef~~~~Klf~l~~~--~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy  277 (795)
                      ..+.+.+...+..  . ...+|..|..  ..+..|+..|...-+.|..=.+...-+++-...+.+      .+-..++|-
T Consensus       143 ~~v~~el~~~lg~--~-~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~------~~G~v~~~r  213 (600)
T 2ywe_A          143 DRVKKQIEEVLGL--D-PEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDP------YRGAVAFVR  213 (600)
T ss_dssp             HHHHHHHHHTSCC--C-GGGCEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEET------TTEEEEEEE
T ss_pred             HHHHHHHHHhhCC--C-cccEEEEEeecCCCchHHHHHHHHhcccccccccCCcceeEEEEeecc------cceEEEEEE
Confidence            3455556555421  1 1347787742  345667777766655554322223334555545443      245677888


Q ss_pred             EeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796          278 LRAHCLSVNQLVHISGAG-DFQLGKIEIL  305 (795)
Q Consensus       278 vRG~~l~~n~lVHIpG~G-Dfqi~~I~~~  305 (795)
                      |....|++|+.|.+..-| .+.+.+|...
T Consensus       214 V~sG~l~~Gd~I~~~~~~~~~~v~~i~~~  242 (600)
T 2ywe_A          214 IFDGEVKPGDKIMLMSTGKEYEVTEVGAQ  242 (600)
T ss_dssp             EEESEECTTCEEEETTTTEEEECCEEEEE
T ss_pred             EEeCEEecCCEEEeccccceEeeeccccc
Confidence            887889999999887655 5677777654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.06  E-value=0.0045  Score=66.16  Aligned_cols=147  Identities=13%  Similarity=0.091  Sum_probs=88.9

Q ss_pred             CCCCCEEEEEecCCCccChhhHHHHHHHhhccCCCC---C------cceEEEecCc-eeeEEEEeCCCCCh---------
Q 003796           75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSSTVSSSKY-RLRTSVLQAPHGDL---------  135 (795)
Q Consensus        75 ~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~------g~~tv~~~r~-k~Ritfie~~~~dl---------  135 (795)
                      ..+||-.|+|+|.++.+.+ +|    +..|.+....   .      ..+......- ...+.|+..| .-.         
T Consensus         6 ~~~~~g~v~ivG~~nvGKS-TL----in~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTP-G~~~~~~~~~l~   79 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKS-TL----LNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP-GIYEPKKSDVLG   79 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHH-HH----HHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECC-CCCCCCTTCHHH
T ss_pred             CCCCCCEEEEECCCCCcHH-HH----HHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECc-CCCccccchhHH
Confidence            4577888999999998876 77    4444333221   1      1222111111 4678899887 431         


Q ss_pred             ----HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHH-HHHHHhcCCCceEEEeccCCcc-hhh-hHHHHHHHHh
Q 003796          136 ----VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQC-LSVFRSLGLPSTAVLIRDLPTD-LKK-RKDLKKMCIS  208 (795)
Q Consensus       136 ----~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~-L~~l~aqG~P~vigVl~~Ld~~-~Kk-~~~~kK~lk~  208 (795)
                          ..+...++-||+||+|+|++.+        +.....++ +..|+..+.| ++.|++..|.. .+. .....+.+..
T Consensus        80 ~~~~~~~~~~l~~aD~il~VvD~~~~--------~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~~~~~~~l~~  150 (308)
T 3iev_A           80 HSMVEIAKQSLEEADVILFMIDATEG--------WRPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNVLPLIDEIHK  150 (308)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEETTTB--------SCHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCEEEEEEeCCCC--------CCchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHHHHHHHHHHH
Confidence                2456778899999999999954        55556677 8889888887 56677877751 121 2233344443


Q ss_pred             hcccccCCCCeeEEeCC--HHHHHHHHHHHhhcc
Q 003796          209 SLTSEFPEDCKFYAADT--KDELHKFLWLFKEQR  240 (795)
Q Consensus       209 ~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k  240 (795)
                      .+    +....+|.+|.  ...+..|...|...-
T Consensus       151 ~~----~~~~~i~~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          151 KH----PELTEIVPISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             HC----TTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hc----cCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence            33    23467888874  233555555555443

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.05  E-value=0.0025  Score=72.20  Aligned_cols=172  Identities=16%  Similarity=0.116  Sum_probs=100.7

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCcc--
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPTD--  195 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~~--  195 (795)
                      +++++|+.+|- .+ ...|+..+..||.+|||+|++.|. ++  ..|+  ..+.+.|..+...|+|.+|.|++.+|..  
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~e--~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~  196 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGE-FE--AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV  196 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTH-HH--HTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCc-cc--cccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence            47899999973 23 345778889999999999999762 10  1244  4688889999999999999999998851  


Q ss_pred             -h-hh-hHHHHHHHHhhcccc--cC--CCCeeEEeCC-----HHHHH-----------HHHHHHhhccccCcccccCCCe
Q 003796          196 -L-KK-RKDLKKMCISSLTSE--FP--EDCKFYAADT-----KDELH-----------KFLWLFKEQRLTVPHWRNQRPF  252 (795)
Q Consensus       196 -~-Kk-~~~~kK~lk~~f~~e--f~--~~~Klf~l~~-----~~E~~-----------nL~R~Is~~k~r~l~WR~~rpY  252 (795)
                       + .. ...+...++.++...  +.  .+..++++|.     -.+..           .|+..|....+ |-.-.+....
T Consensus       197 ~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~-~~~~~~~p~~  275 (467)
T 1r5b_A          197 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTH-LERKVNAPFI  275 (467)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCC-CHHHHTSCCE
T ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCC-CcCCCCCCcE
Confidence             1 11 233444455444332  11  1345666663     11111           14445544322 1111123334


Q ss_pred             EEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796          253 LMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEIL  305 (795)
Q Consensus       253 mLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~  305 (795)
                      |.++++ +.      ..| .+++|.|....|++|..|.+.+.| ...|.+|...
T Consensus       276 ~~v~~~-~~------~~G-~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~  321 (467)
T 1r5b_A          276 MPIASK-YK------DLG-TILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE  321 (467)
T ss_dssp             EECCEE-EE------SSS-EEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT
T ss_pred             EEEEEE-Ee------CCC-eEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc
Confidence            445554 22      134 589999999999999999985555 5677777653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=96.94  E-value=0.07  Score=62.30  Aligned_cols=166  Identities=7%  Similarity=-0.006  Sum_probs=109.2

Q ss_pred             eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      ..+++|+.+|- .|+ ..+...++.||.+|||+|++.|        ....+.+.+..+..+|+| +|.|++.+|......
T Consensus        70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~g--------v~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~~  140 (599)
T 3cb4_D           70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG--------VEAQTLANCYTAMEMDLE-VVPVLNKIDLPAADP  140 (599)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTC--------CCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCCH
T ss_pred             eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEeeeccCcccccH
Confidence            36889999873 233 3466778999999999999965        667788888888899998 778899888511222


Q ss_pred             HHHHHHHHhhcccccCCCCeeEEeCCH--HHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 003796          200 KDLKKMCISSLTSEFPEDCKFYAADTK--DELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY  277 (795)
Q Consensus       200 ~~~kK~lk~~f~~ef~~~~Klf~l~~~--~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy  277 (795)
                      ..+.+.+...|..  . ...+|..|..  ..+..|+..|...-+.|..-.+...-+++-...+.+      ..-..++|-
T Consensus       141 ~~v~~ei~~~lg~--~-~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~------~~G~v~~~r  211 (599)
T 3cb4_D          141 ERVAEEIEDIVGI--D-ATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDN------YLGVVSLIR  211 (599)
T ss_dssp             HHHHHHHHHHTCC--C-CTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEET------TTEEEEEEE
T ss_pred             HHHHHHHHHHhCC--C-cceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccc------cccEEEEEE
Confidence            3455556555422  1 2357888842  345667777766666554322222234554444433      234567777


Q ss_pred             EeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796          278 LRAHCLSVNQLVHISGAG-DFQLGKIEIL  305 (795)
Q Consensus       278 vRG~~l~~n~lVHIpG~G-Dfqi~~I~~~  305 (795)
                      |-...|++|..|.+..-| .+.+.+|..+
T Consensus       212 V~sG~l~~Gd~v~~~~~~~~~~v~~i~~~  240 (599)
T 3cb4_D          212 IKNGTLRKGDKVKVMSTGQTYNADRLGIF  240 (599)
T ss_dssp             EEESCEESSCEEEETTTCCEEECCEEEEE
T ss_pred             EEeCEEecCCEEEeccccceeEEeeeeec
Confidence            777779999998887655 4577887654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=96.94  E-value=0.0026  Score=74.38  Aligned_cols=209  Identities=8%  Similarity=0.115  Sum_probs=116.7

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC----C--CcceEEEec-----------Cc-----eeeEEEEeCCC-CCh
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT----G--ALSSTVSSS-----------KY-----RLRTSVLQAPH-GDL  135 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~----~--~g~~tv~~~-----------r~-----k~Ritfie~~~-~dl  135 (795)
                      |..|+|+|..+.+.+ +|++.|+........    +  .|...+...           ..     ...++|+.+|- .++
T Consensus         5 ~~~V~IvGh~d~GKT-TLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKT-TLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCEEEEECSTTSSHH-HHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CcEEEEECCCCCcHH-HHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            457999999998876 675554443211111    1  133333211           00     01489999873 344


Q ss_pred             HHHHH-HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chh-------------hh
Q 003796          136 VGCME-MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLK-------------KR  199 (795)
Q Consensus       136 ~~~LD-~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~K-------------k~  199 (795)
                      .++.. .+..||.+|||+|++.|        +...+++.|+.++..|+| ++.|++.+|.  .+.             ..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~G--------v~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~~~~e~sa~~~  154 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCCchHHHHHHhH
Confidence            44443 35789999999999965        888999999999999999 5666776664  111             00


Q ss_pred             HHHH-----------HHHH-hhcccc-------cCCCCeeEEeCCH--HHHHHHHHHHhhccccC----cccc-cCCCeE
Q 003796          200 KDLK-----------KMCI-SSLTSE-------FPEDCKFYAADTK--DELHKFLWLFKEQRLTV----PHWR-NQRPFL  253 (795)
Q Consensus       200 ~~~k-----------K~lk-~~f~~e-------f~~~~Klf~l~~~--~E~~nL~R~Is~~k~r~----l~WR-~~rpYm  253 (795)
                      ..++           ..|. ..|..+       +.....+|..|..  .-+..|+..|...-+.+    +..- +...-+
T Consensus       155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~  234 (594)
T 1g7s_A          155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARG  234 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCcee
Confidence            1111           1221 122211       1223467888742  22344444444332222    2222 223344


Q ss_pred             EEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCc-e--eeceee
Q 003796          254 MAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGD-F--QLGKIE  303 (795)
Q Consensus       254 Ladr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GD-f--qi~~I~  303 (795)
                      ++..+...+      ..-..++|-|....|++|..|.+.+.|. +  .|.+|.
T Consensus       235 ~V~~~~~d~------g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~  281 (594)
T 1g7s_A          235 TILEVKEET------GLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLL  281 (594)
T ss_dssp             EEEEEEEET------TEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEE
T ss_pred             EEEEEEEeC------CcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEE
Confidence            555554432      2245678888877799999998877654 4  444443

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=96.86  E-value=0.0011  Score=76.44  Aligned_cols=206  Identities=11%  Similarity=0.078  Sum_probs=111.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh-ccCCC---C--CcceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEEE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL-SSEGT---G--ALSSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVAF  150 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~~---~--~g~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVll  150 (795)
                      |..|+|+|.++.+.+ +|++.|...- .....   +  .+..++..+. ..+++|+.+|- .++.. +...++.||++||
T Consensus         4 ~pkV~IvG~~~vGKT-SLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            4 SPVVTIMGHVDHGKT-TLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCBCEEEESTTTTHH-HHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCEEEEECCCCCCHH-HHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            445899999988775 6744333221 11111   1  1333333321 35899999873 23443 3346788999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh--cccccCCCCeeEEeCC---
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS--LTSEFPEDCKFYAADT---  225 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~--f~~ef~~~~Klf~l~~---  225 (795)
                      |+|++.|        ....+.+.|..+...|+| ++.|++.+|........++..+..+  +...+.....+|.+|.   
T Consensus        82 VVDa~dg--------~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG  152 (537)
T 3izy_P           82 VVAADDG--------VMKQTVESIQHAKDAHVP-IVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG  152 (537)
T ss_dssp             ECBSSSC--------CCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred             EEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence            9999965        667899999999999999 7777887774101111122222221  1223333456777773   


Q ss_pred             --HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceee
Q 003796          226 --KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIE  303 (795)
Q Consensus       226 --~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~  303 (795)
                        -.++...+-.+.... .+-.-.+....+.+++.....     ..| ..++|-|....|++|..| ++|----.|..|.
T Consensus       153 ~GI~eLle~I~~l~~~~-~~~~~~~~~~~~~V~e~~~~~-----g~G-~V~~g~V~~G~l~~Gd~v-~~g~~~~kVr~i~  224 (537)
T 3izy_P          153 ENMMALAEATIALAEML-ELKADPTGAVEGTVIESFTDK-----GRG-PVTTAIIQRGTLRKGSIL-VAGKSWAKVRLMF  224 (537)
T ss_dssp             CSSHHHHHHHHHHHTTC-CCCCCSSSSEEEEEEEECCCT-----TCC-CCEEEEEEEECCSSEEEE-CCSSCCEEEEEEE
T ss_pred             CCchhHHHHHHHhhhcc-cccCCCCCCcceeEEEEEEeC-----CCc-eEEEEEEecCEEEcCCEE-EeCCceEEEEEEE
Confidence              344443333322211 111111233344455544322     123 356676666668988877 5653223455444

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=96.84  E-value=0.002  Score=73.82  Aligned_cols=197  Identities=13%  Similarity=0.059  Sum_probs=109.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh-ccCC---CC--CcceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEEE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL-SSEG---TG--ALSSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVAF  150 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~---~~--~g~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVll  150 (795)
                      |..|+|+|..+.+.+ +|++.|.+.- ....   .+  .+..++..+  ..+++|+.+|- .++.+ +.-.+..||++||
T Consensus         4 ~~~V~IvGhvd~GKT-TLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            4 APVVTIMGHVDHGKT-SLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCEEEEESTTSSSH-HHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CeEEEEECCCCCCHH-HHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            556899999998886 6744444321 1110   01  133333333  35899999873 23333 3445789999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHh--hcccccCCCCeeEEeCCH--
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCIS--SLTSEFPEDCKFYAADTK--  226 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~--~f~~ef~~~~Klf~l~~~--  226 (795)
                      ++|++.|        +...+.+.|..++..|+| ++.|++.+|........++..+..  .+...+.....+|..|..  
T Consensus        81 VVda~~g--------~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG  151 (501)
T 1zo1_I           81 VVAADDG--------VMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG  151 (501)
T ss_dssp             EEETTTB--------SCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred             EeecccC--------ccHHHHHHHHHHHhcCce-EEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence            9999865        566788999999999999 788888888510111111111111  111222223578888842  


Q ss_pred             HHHHHHHHHHhhccc-cCcccccCCC-eEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCC
Q 003796          227 DELHKFLWLFKEQRL-TVPHWRNQRP-FLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISG  293 (795)
Q Consensus       227 ~E~~nL~R~Is~~k~-r~l~WR~~rp-YmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG  293 (795)
                      ..+..|+..|..+.. ..+.-...+| -+++.+.-..+      ..-..++|.|....|++|..|-+++
T Consensus       152 ~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~------g~G~v~~~~V~~Gtlk~Gd~v~~g~  214 (501)
T 1zo1_I          152 TGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDK------GRGPVATVLVREGTLHKGDIVLCGF  214 (501)
T ss_dssp             TTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECS------SSSEEEEEEEEESBCCTTCEEEEEB
T ss_pred             cCcchhhhhhhhhhhhhccccccccccccceEEEEEeC------CcEEEEEEEEEeeEEecCCEEEEcc
Confidence            234455556654311 1111111222 33444433221      2235677877666699988776643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.83  E-value=0.01  Score=59.02  Aligned_cols=146  Identities=12%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCC---CCC-------cceEEEec-CceeeEEEEeCCCCC-------------
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG---TGA-------LSSTVSSS-KYRLRTSVLQAPHGD-------------  134 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~---~~~-------g~~tv~~~-r~k~Ritfie~~~~d-------------  134 (795)
                      +.-|+|+|.++.++. +|    +..|+...   ...       ........ ....+++|+..| .-             
T Consensus        29 ~~~i~v~G~~~~GKS-sl----in~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp-G~~~~~~~~~~~~~~  102 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKS-TA----INVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLP-GYGYAEVPGAAKAHW  102 (223)
T ss_dssp             SCEEEEEESCHHHHH-HH----HHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECC-CCCSSCCCSTHHHHH
T ss_pred             CCEEEEEcCCCCCHH-HH----HHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCC-CCCcccCChhhHHHH
Confidence            445889999998876 67    55554432   111       11112221 123689999988 41             


Q ss_pred             ---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhc
Q 003796          135 ---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSL  210 (795)
Q Consensus       135 ---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f  210 (795)
                         +...+..+..+|+||+|+|++.+        +.....+++..|+..+.| ++.|++..|. +..........++..+
T Consensus       103 ~~~~~~~~~~~~~~d~vi~v~d~~~~--------~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~l  173 (223)
T 4dhe_A          103 EQLLSSYLQTRPQLCGMILMMDARRP--------LTELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQESINALRATQKSL  173 (223)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcCcCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEeccccCChhhHHHHHHHHHHHH
Confidence               12344455669999999999854        667778899999988887 6677888875 1112222333333333


Q ss_pred             ccc----cCCCCeeEEeCC--HHHHHHHHHHHhhc
Q 003796          211 TSE----FPEDCKFYAADT--KDELHKFLWLFKEQ  239 (795)
Q Consensus       211 ~~e----f~~~~Klf~l~~--~~E~~nL~R~Is~~  239 (795)
                      ...    ...+..+|.+|.  ...+..|...|...
T Consensus       174 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  208 (223)
T 4dhe_A          174 DAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESW  208 (223)
T ss_dssp             HHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence            332    134678888884  22344455555433

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.42  E-value=0.03  Score=54.09  Aligned_cols=139  Identities=12%  Similarity=0.054  Sum_probs=80.3

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCC-C-----CCc----ceEEEecCceeeEEEEeCCCC------------C--
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG-T-----GAL----SSTVSSSKYRLRTSVLQAPHG------------D--  134 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~-----~~g----~~tv~~~r~k~Ritfie~~~~------------d--  134 (795)
                      +.-|+|+|.++.+.. +|    +..|.... .     ..|    ......   ..+++++.+| .            .  
T Consensus        23 ~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~-G~~~~~~~~~~~~~~~   93 (195)
T 1svi_A           23 LPEIALAGRSNVGKS-SF----INSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVP-GYGFAKVSKSEREAWG   93 (195)
T ss_dssp             CCEEEEEEBTTSSHH-HH----HHHHHTC-------------CCEEEEEE---TTTEEEEECC-CBCCCSSCHHHHHHHH
T ss_pred             CCEEEEECCCCCCHH-HH----HHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECC-CCCccccCHHHHHHHH
Confidence            456889999998876 67    44443322 1     111    111222   3478999998 4            1  


Q ss_pred             --hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcc
Q 003796          135 --LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLT  211 (795)
Q Consensus       135 --l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~  211 (795)
                        +...+..+.-+|.+|+++|++.+        +.....+++..+...+.| ++.|++..|. +..........++..+.
T Consensus        94 ~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~~~  164 (195)
T 1svi_A           94 RMIETYITTREELKAVVQIVDLRHA--------PSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWDKHAKVVRQTLN  164 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhcCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCChHHHHHHHHHHHHHHc
Confidence              12223333444999999999854        445556778888888887 6677888775 11223334445554443


Q ss_pred             cccCCCCeeEEeCCH--HHHHHHHHHHh
Q 003796          212 SEFPEDCKFYAADTK--DELHKFLWLFK  237 (795)
Q Consensus       212 ~ef~~~~Klf~l~~~--~E~~nL~R~Is  237 (795)
                      .  ..+..+|.+|..  ..+..|...|.
T Consensus       165 ~--~~~~~~~~~Sa~~~~gv~~l~~~l~  190 (195)
T 1svi_A          165 I--DPEDELILFSSETKKGKDEAWGAIK  190 (195)
T ss_dssp             C--CTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred             c--cCCCceEEEEccCCCCHHHHHHHHH
Confidence            2  235788888842  33445555443

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.37  E-value=0.03  Score=53.83  Aligned_cols=129  Identities=9%  Similarity=0.118  Sum_probs=76.9

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cc-eEEEecCceeeEEEEeCCCC----------C--h----HH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LS-STVSSSKYRLRTSVLQAPHG----------D--L----VG  137 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~-~tv~~~r~k~Ritfie~~~~----------d--l----~~  137 (795)
                      .-|+|+|.++.+.. +|    +..|.......     |. ..+.......+++++..| .          .  .    ..
T Consensus        24 ~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~-G~~~~~~~~~~~~~~~~~~~~   97 (195)
T 3pqc_A           24 GEVAFVGRSNVGKS-SL----LNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLP-GYGYAKVSKKERMLWKRLVED   97 (195)
T ss_dssp             CEEEEEEBTTSSHH-HH----HHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECC-CBSSSCCCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHH-HH----HHHHHcCccccccCCCCCccCeEEEEECCcEEEEECC-CCccccCChhhHHHHHHHHHH
Confidence            34789999998886 77    44443332111     11 111111123578899988 4          0  1    23


Q ss_pred             HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCC
Q 003796          138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPE  216 (795)
Q Consensus       138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~  216 (795)
                      .+..+..+|+|++++|++.+        +......++..+...+.| ++.|++..|. +...+......++..+.. + .
T Consensus        98 ~~~~~~~~~~vi~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~  166 (195)
T 3pqc_A           98 YFKNRWSLQMVFLLVDGRIP--------PQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSERAKKLEEHRKVFSK-Y-G  166 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHHHHS-S-C
T ss_pred             HHhcCcCceEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEEChhcCChHHHHHHHHHHHHHHhh-c-C
Confidence            44455667999999999853        555666788888888887 5667888774 112233444555544432 1 2


Q ss_pred             CCeeEEeCC
Q 003796          217 DCKFYAADT  225 (795)
Q Consensus       217 ~~Klf~l~~  225 (795)
                      ...+|.+|.
T Consensus       167 ~~~~~~~Sa  175 (195)
T 3pqc_A          167 EYTIIPTSS  175 (195)
T ss_dssp             CSCEEECCT
T ss_pred             CCceEEEec
Confidence            467888874

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.22  E-value=0.12  Score=61.02  Aligned_cols=105  Identities=23%  Similarity=0.244  Sum_probs=71.5

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhcc---C-------CC------------CC--cceEEEecCceeeEEEEeCCC-
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSS---E-------GT------------GA--LSSTVSSSKYRLRTSVLQAPH-  132 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~---~-------~~------------~~--g~~tv~~~r~k~Ritfie~~~-  132 (795)
                      ..+.|+|+|.++.+++ +|++.|+.....   .       ..            +.  ...++...  ..++.++.+|- 
T Consensus         8 ~~~~i~IiG~~gaGKT-TLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~   84 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKT-TLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY   84 (665)
T ss_dssp             CEEEEEEEESTTSSHH-HHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred             CCcEEEEECCCCChHH-HHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence            4578999999988775 665554532211   0       00            00  11222222  46788887652 


Q ss_pred             CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          133 GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       133 ~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .++ ..+..+++.||.+|+++|++.|        ++.++.++++.+...|+|.++ |++.+|.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g--------~~~qt~~~~~~~~~~~ip~il-v~NKiD~  138 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAG--------VQVGTERAWTVAERLGLPRMV-VVTKLDK  138 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEE-EEECGGG
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcc--------cchhHHHHHHHHHHccCCEEE-EecCCch
Confidence            343 4578889999999999999854        888899999999999999765 5777775

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.16  E-value=0.098  Score=55.63  Aligned_cols=140  Identities=9%  Similarity=0.050  Sum_probs=84.6

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC---C------cceE-EEecCceeeEEEEeCCC-CC--------hH-HHHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSST-VSSSKYRLRTSVLQAPH-GD--------LV-GCME  140 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~------g~~t-v~~~r~k~Ritfie~~~-~d--------l~-~~LD  140 (795)
                      .|+|+|.++.+.+ +|    +..|......   .      ..+. +... ....+.|+..|- .+        +. ....
T Consensus         9 ~V~ivG~~nvGKS-TL----ln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            9 FVAIVGKPNVGKS-TL----LNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             EEEEECSTTSSHH-HH----HHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCceeeecCCCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            4999999998876 77    4444333221   1      1111 2212 246888998872 12        22 2345


Q ss_pred             HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCC
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDC  218 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~  218 (795)
                      +.+-||.+|+|+|++.+        +......++..|+..  +.| ++.|++.+|.. .+...+...++.+     ....
T Consensus        83 ~l~~ad~il~VvD~~~~--------~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~-~~~~~~~~~~~~~-----~~~~  147 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHP--------PTPEDELVARALKPLVGKVP-ILLVGNKLDAA-KYPEEAMKAYHEL-----LPEA  147 (301)
T ss_dssp             HTSSCSEEEEEEETTSC--------CCHHHHHHHHHHGGGTTTSC-EEEEEECGGGC-SSHHHHHHHHHHT-----STTS
T ss_pred             HHhcCCEEEEEEECCCC--------CChHHHHHHHHHHhhcCCCC-EEEEEECcccC-CchHHHHHHHHHh-----cCcC
Confidence            66889999999999854        555667778888877  777 56678888851 1111133444433     2245


Q ss_pred             eeEEeCC--HHHHHHHHHHHhhccc
Q 003796          219 KFYAADT--KDELHKFLWLFKEQRL  241 (795)
Q Consensus       219 Klf~l~~--~~E~~nL~R~Is~~k~  241 (795)
                      .+|.+|.  ...+..|...|...-+
T Consensus       148 ~~~~iSA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          148 EPRMLSALDERQVAELKADLLALMP  172 (301)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHhcc
Confidence            6888885  4556677777765443

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.06  E-value=0.046  Score=51.73  Aligned_cols=133  Identities=14%  Similarity=0.204  Sum_probs=77.6

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC----------CcceEEEecCceeeEEEEeCCC-CChHHH-HHHHhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG----------ALSSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKV  144 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----------~g~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKv  144 (795)
                      ..+.-|+|+|.++.+.. +|    +..|+.....          .+..++....  .+++++..|- ..+..+ ...++.
T Consensus         6 ~~~~~i~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~   78 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKT-TL----LDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQV   78 (178)
T ss_dssp             CCCCEEEEESCTTTTHH-HH----HHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCC
T ss_pred             CCCCEEEEECCCCCCHH-HH----HHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhh
Confidence            34566899999998876 67    4444322111          0334444443  5677777652 111111 233567


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHh--hcccccCCCCeeEE
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCIS--SLTSEFPEDCKFYA  222 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~--~f~~ef~~~~Klf~  222 (795)
                      ||.+|+++|++.+        ...+.++.|..+...+.| ++.|++..|............++.  .+...+.....+|.
T Consensus        79 ~d~~i~v~d~~~~--------~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (178)
T 2lkc_A           79 TDIVILVVAADDG--------VMPQTVEAINHAKAANVP-IIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCK  149 (178)
T ss_dssp             CCEEEEEEETTCC--------CCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred             CCEEEEEEECCCC--------CcHHHHHHHHHHHhCCCC-EEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEE
Confidence            9999999998853        456778888888888888 777888888511111233333322  12222222357888


Q ss_pred             eCC
Q 003796          223 ADT  225 (795)
Q Consensus       223 l~~  225 (795)
                      +|.
T Consensus       150 ~Sa  152 (178)
T 2lkc_A          150 LSA  152 (178)
T ss_dssp             CCS
T ss_pred             Eec
Confidence            884

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.94  E-value=0.094  Score=52.55  Aligned_cols=105  Identities=11%  Similarity=0.144  Sum_probs=64.9

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceE--EEecC---ceeeEEEEeCCCCC------------hH
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSST--VSSSK---YRLRTSVLQAPHGD------------LV  136 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~~t--v~~~r---~k~Ritfie~~~~d------------l~  136 (795)
                      ..+.-|+|+|.++.+.. +|    +..|+......   ...|  +....   ...+++|+..| .-            ..
T Consensus        27 ~~~~kI~vvG~~~vGKS-sL----in~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dtp-G~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKS-SF----MNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTP-GLLDRAFENRNTIEMT  100 (228)
T ss_dssp             TTSEEEEEECSTTSSHH-HH----HHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECT-TTTTSCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECC-CCcCcccchhhhHHHH
Confidence            34567999999998886 77    55554332111   1111  11111   12578899987 43            34


Q ss_pred             HHHHHHhhhceEEEeeeCCCccccccccccCh-HHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          137 GCMEMAKVADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      ++......||.+|+|+|++..      ..|+. ...+++..++..  +.| ++.|++..|.
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~------~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl  154 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQ------CGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDK  154 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCT------TSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGG
T ss_pred             HHHHhhccccEEEEEEecccc------cCcchHHHHHHHHHHHHhhcCCc-EEEEEeCccc
Confidence            455567889999999999853      33553 335677777765  666 6677787774

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.93  E-value=0.073  Score=51.07  Aligned_cols=88  Identities=8%  Similarity=0.053  Sum_probs=52.5

Q ss_pred             eeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh--
Q 003796          123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK--  197 (795)
Q Consensus       123 ~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K--  197 (795)
                      .+++|+..| ..   ...+...++-||.+|+|+|++.+      ..|+. ...+|..+..+.-+.++.|++..|....  
T Consensus        93 ~~~~i~Dt~-G~~~~~~~~~~~~~~~d~~i~v~D~~~~------~s~~~-~~~~~~~i~~~~~~piilv~NK~D~~~~~~  164 (208)
T 3clv_A           93 IKFDIWDTA-GQERYASIVPLYYRGATCAIVVFDISNS------NTLDR-AKTWVNQLKISSNYIIILVANKIDKNKFQV  164 (208)
T ss_dssp             EEEEEEECT-TGGGCTTTHHHHHTTCSEEEEEEETTCH------HHHHH-HHHHHHHHHHHSCCEEEEEEECTTCC-CCS
T ss_pred             eEEEEEECC-CcHHHHHHHHHHhcCCCEEEEEEECCCH------HHHHH-HHHHHHHHHhhCCCcEEEEEECCCcccccC
Confidence            688999887 32   11245567889999999999853      22332 2344555544332778888998884111  


Q ss_pred             hhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          198 KRKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                      .....++.++..       +..+|.+|.
T Consensus       165 ~~~~~~~~~~~~-------~~~~~~~Sa  185 (208)
T 3clv_A          165 DILEVQKYAQDN-------NLLFIQTSA  185 (208)
T ss_dssp             CHHHHHHHHHHT-------TCEEEEECT
T ss_pred             CHHHHHHHHHHc-------CCcEEEEec
Confidence            123344444331       457888874

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=95.91  E-value=0.35  Score=55.59  Aligned_cols=104  Identities=14%  Similarity=0.135  Sum_probs=71.0

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHh------h-------------c---------cCCCCCcceEEEecCceeeEEEEeC
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQ------L-------------S---------SEGTGALSSTVSSSKYRLRTSVLQA  130 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~------~-------------~---------~~~~~~g~~tv~~~r~k~Ritfie~  130 (795)
                      .+.|+|+|.++.+++ +|++.|+..      .             .         .........++...  ..+++|+.+
T Consensus        13 ~r~IaIiG~~~aGKT-TL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT   89 (528)
T 3tr5_A           13 RRTFAIISHPDAGKT-TLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT   89 (528)
T ss_dssp             EEEEEEEECTTSSHH-HHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred             CCEEEEECCCCCcHH-HHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence            356999999998775 665554310      0             0         00111123333333  468999988


Q ss_pred             CC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          131 PH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       131 ~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      |- .+ ...+......||.+|+|+|++.|        +...+..++..+...|+| ++.|++.+|.
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g--------~~~~t~~~~~~~~~~~iP-iivviNK~Dl  146 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKG--------VEPRTIKLMEVCRLRHTP-IMTFINKMDR  146 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHHTTTCC-EEEEEECTTS
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence            73 23 34567778999999999999965        778899999999999998 5567888875

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=95.90  E-value=0.61  Score=55.44  Aligned_cols=79  Identities=11%  Similarity=0.120  Sum_probs=56.4

Q ss_pred             eeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhH
Q 003796          123 LRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRK  200 (795)
Q Consensus       123 ~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~  200 (795)
                      .++.|+.+|- .|+ ..+.-+.+.||.+|+++|++.|        ....+.+++..+...|+|.+ .|++.+|.......
T Consensus        82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~~~~  152 (704)
T 2rdo_7           82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG--------VQPQSETVWRQANKYKVPRI-AFVNKMDRMGANFL  152 (704)
T ss_pred             eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCCEE-EEEeCCCcccccHH
Confidence            6889999873 243 4567788999999999999965        66678889999999999965 46888875112223


Q ss_pred             HHHHHHHhhc
Q 003796          201 DLKKMCISSL  210 (795)
Q Consensus       201 ~~kK~lk~~f  210 (795)
                      .+...++.+|
T Consensus       153 ~~~~~l~~~l  162 (704)
T 2rdo_7          153 KVVNQIKTRL  162 (704)
T ss_pred             HHHHHHHHHh
Confidence            3444444443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=95.82  E-value=0.36  Score=57.24  Aligned_cols=122  Identities=11%  Similarity=0.041  Sum_probs=75.6

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh---ccC---CC----------C-CcceEEEe-----cCceeeEEEEeCCC-CC-
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL---SSE---GT----------G-ALSSTVSS-----SKYRLRTSVLQAPH-GD-  134 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~---~~~---~~----------~-~g~~tv~~-----~r~k~Ritfie~~~-~d-  134 (795)
                      .+.|+|+|..+.++. +|++.|+..-   ...   +.          + ...+|+.+     .....++.|+.+|- .| 
T Consensus        12 ~~~I~IvG~~~aGKT-TL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   90 (691)
T 1dar_A           12 LRNIGIAAHIDAGKT-TTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF   90 (691)
T ss_dssp             EEEEEEEECTTSCHH-HHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred             ccEEEEECCCCCCHH-HHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence            567999999988775 6655555321   000   00          0 11122221     11136889998873 24 


Q ss_pred             hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhc
Q 003796          135 LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSL  210 (795)
Q Consensus       135 l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f  210 (795)
                      ...+..+.+.||.+|+++|++.|        ....+.+++..+..+|+|.+ .|++.+|........+...++.++
T Consensus        91 ~~~~~~~l~~aD~~ilVvDa~~g--------~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~l~~~l  157 (691)
T 1dar_A           91 TIEVERSMRVLDGAIVVFDSSQG--------VEPQSETVWRQAEKYKVPRI-AFANKMDKTGADLWLVIRTMQERL  157 (691)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCC--------cchhhHHHHHHHHHcCCCEE-EEEECCCcccCCHHHHHHHHHHHh
Confidence            34567788999999999999965        66778889999999999965 568888852122344555555554

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.71  E-value=0.086  Score=50.72  Aligned_cols=162  Identities=6%  Similarity=0.002  Sum_probs=84.0

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHH-hhccCCCCCc--ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEEe
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLR-QLSSEGTGAL--SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAFV  151 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk-~~~~~~~~~g--~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll~  151 (795)
                      ..+.-|+|+|.++.+.. +|++.|+. .+..+..+.|  ..++...  ..+++++.++-. ....+ ....+-||.+|+|
T Consensus        14 ~~~~~i~v~G~~~~GKs-sl~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKT-TILYQFSMNEVVHTSPTIGSNVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             TSCEEEEEEESTTSSHH-HHHHHHHTTSCEEEECCSCSSCEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CCccEEEEECCCCCCHH-HHHHHHhcCCCCcCcCCCccceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            34677999999998875 77333331 1111111112  2233333  368889988731 12222 3456789999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCcch-hhhHHHHHHHHhhcccccCCCCeeEEeCC--
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPTDL-KKRKDLKKMCISSLTSEFPEDCKFYAADT--  225 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~~~-Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--  225 (795)
                      +|++..      ..|+.....+..+++.   .+.| ++.|++..|... .....+.+.+......  ..+..+|.+|.  
T Consensus        91 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~i~~~~~~~~~~--~~~~~~~~~Sa~~  161 (187)
T 1zj6_A           91 VDSTDR------ERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTVAEISQFLKLTSIK--DHQWHIQACCALT  161 (187)
T ss_dssp             EETTCT------TTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCCHHHHHHHHTGGGCC--SSCEEEEECBTTT
T ss_pred             EeCCCH------HHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCCHHHHHHHhChhhhc--CCCcEEEEccCCC
Confidence            999853      3355555555555543   4555 667788888511 1123344433321111  12457788874  


Q ss_pred             HHHHHHHHHHHhhccccCcccccCC
Q 003796          226 KDELHKFLWLFKEQRLTVPHWRNQR  250 (795)
Q Consensus       226 ~~E~~nL~R~Is~~k~r~l~WR~~r  250 (795)
                      ...+..|...|...-..+..|...+
T Consensus       162 g~gi~~l~~~l~~~~~~~~~~~~~~  186 (187)
T 1zj6_A          162 GEGLCQGLEWMMSRLKIRLEHHHHH  186 (187)
T ss_dssp             TBTHHHHHHHHHHHHCC--------
T ss_pred             CcCHHHHHHHHHHHHHHHhhhhccC
Confidence            3345666666666555555554433

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=95.64  E-value=0.08  Score=60.93  Aligned_cols=79  Identities=15%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      ..+++++.+|- .++ ..+...+..||.+|+|+|++.|        ++.++.+++..+...|+| ++.|++.+|......
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g--------~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~  151 (529)
T 2h5e_A           81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG--------VEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP  151 (529)
T ss_dssp             TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc--------chHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH
Confidence            46899999973 243 3577888999999999999965        778899999999999999 778899888511222


Q ss_pred             HHHHHHHHhh
Q 003796          200 KDLKKMCISS  209 (795)
Q Consensus       200 ~~~kK~lk~~  209 (795)
                      .++...++..
T Consensus       152 ~~~~~~i~~~  161 (529)
T 2h5e_A          152 MELLDEVENE  161 (529)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            2344444444

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.59  E-value=0.12  Score=47.70  Aligned_cols=101  Identities=15%  Similarity=0.131  Sum_probs=62.7

Q ss_pred             EEEecCCCccChhhHHHHHHHhhcc-CCCCC----cc--eEEEecCceeeEEEEeCCCCC--------hH-HHHHHHhhh
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSS-EGTGA----LS--STVSSSKYRLRTSVLQAPHGD--------LV-GCMEMAKVA  145 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~-~~~~~----g~--~tv~~~r~k~Ritfie~~~~d--------l~-~~LD~aKvA  145 (795)
                      |+|+|+++.+.. +|++.|+..... .....    ..  .++...  ..++.++.+|-..        +. ......+-|
T Consensus         4 i~v~G~~~~GKS-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T 2dyk_A            4 VVIVGRPNVGKS-SLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA   80 (161)
T ss_dssp             EEEECCTTSSHH-HHHHHHHHCCC-----------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred             EEEECCCCCCHH-HHHHHHhCCCeeeccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence            789999998876 673333322100 00000    11  122222  2578899887322        12 234556889


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      |.+|+++|++.+        +......++..++..+.| ++.|++..|.
T Consensus        81 ~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  120 (161)
T 2dyk_A           81 EVVLFAVDGRAE--------LTQADYEVAEYLRRKGKP-VILVATKVDD  120 (161)
T ss_dssp             SEEEEEEESSSC--------CCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred             CEEEEEEECCCc--------ccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence            999999999853        555567788888888887 6778999886

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.44  E-value=0.2  Score=48.27  Aligned_cols=145  Identities=14%  Similarity=0.133  Sum_probs=79.4

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcceEEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceEE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALSSTVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVA  149 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~~tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlVl  149 (795)
                      ++-|+|+|.++.+.. +|    +..|.....      +.|...........++.++..+ ..  +..+ ....+-||.+|
T Consensus        22 ~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           22 EMELTLVGLQYSGKT-TF----VNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG-GQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             EEEEEEECSTTSSHH-HH----HHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEEC-CSHHHHTTHHHHHTTCSEEE
T ss_pred             ccEEEEECCCCCCHH-HH----HHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECC-CCHhHHHHHHHHHccCCEEE
Confidence            456999999998875 77    444432221      1132221122224688889887 43  2222 33457799999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                      ||+|++..      ..|+.....+..+++.   .+.| ++.|++..|.... ...++.+.+...+...  .+..+|.+|.
T Consensus        96 ~v~D~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA  166 (188)
T 1zd9_A           96 YMVDAADQ------EKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALDEKELIEKMNLSAIQD--REICCYSISC  166 (188)
T ss_dssp             EEEETTCG------GGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCCHHHHHHHTTGGGCCS--SCEEEEECCT
T ss_pred             EEEECCCH------HHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCCHHHHHHHhChhhhcc--CCeeEEEEEC
Confidence            99999843      3355555555555553   5665 6677888885111 1223333332221111  2456788874


Q ss_pred             --HHHHHHHHHHHhh
Q 003796          226 --KDELHKFLWLFKE  238 (795)
Q Consensus       226 --~~E~~nL~R~Is~  238 (795)
                        ...+..|...|..
T Consensus       167 ~~g~gv~~l~~~l~~  181 (188)
T 1zd9_A          167 KEKDNIDITLQWLIQ  181 (188)
T ss_dssp             TTCTTHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence              2335555555544

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.27  E-value=0.19  Score=46.97  Aligned_cols=137  Identities=9%  Similarity=0.044  Sum_probs=75.4

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHh-hccCCCCCcce--EEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEEEe
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQ-LSSEGTGALSS--TVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFV  151 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~g~~--tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVll~  151 (795)
                      ..++-|+|+|.++.+.. +|++.|... +.....+.|..  ++...  ..+++++..|-. ....+. ...+-||.+|++
T Consensus         5 ~~~~~i~v~G~~~~GKs-sl~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   81 (171)
T 1upt_A            5 TREMRILILGLDGAGKT-TILYRLQVGEVVTTIPTIGFNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   81 (171)
T ss_dssp             SSCEEEEEECSTTSSHH-HHHHHHHHSSCCCCCCCSSEEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CCccEEEEECCCCCCHH-HHHHHHhcCCCCCcCCcCccceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            34677999999998876 773333221 11111111321  23333  468888988731 233332 445679999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCcc-hhhhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPTD-LKKRKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~~-~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                      +|++..      ..|+.....+..+++.   .+.| ++.|++..|.. ......+.+.+...+-..  .+..+|..|.
T Consensus        82 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa  150 (171)
T 1upt_A           82 VDSCDR------DRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMTSSEMANSLGLPALKD--RKWQIFKTSA  150 (171)
T ss_dssp             EETTCC------TTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHHHHHHHTGGGCTT--SCEEEEECCT
T ss_pred             EECCCH------HHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCCHHHHHHHhCchhccC--CceEEEECcC
Confidence            999853      3366555666666654   4555 66778888851 111233444433222111  2346777773

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.18  E-value=0.16  Score=46.98  Aligned_cols=144  Identities=9%  Similarity=0.089  Sum_probs=78.1

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc---ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEe
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFV  151 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~  151 (795)
                      +.-|+|+|+++.+.. +|++.++..- .. +..+.+   ..++.......+++++.+|- .....+. ...+-||.++++
T Consensus         3 ~~~i~v~G~~~~GKS-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKS-ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHH-HHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHH-HHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            456999999998876 6733333211 00 111111   22333344456789999873 2344443 346779999999


Q ss_pred             eeCCCcccccccccc---ChHHHHHHHHHHhcCCCceEEEeccCCc-chhh--hHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          152 ASASSFSEESMSYYI---DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKK--RKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       152 idas~g~~~~~~~~f---e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk--~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                      +|++..      ..|   ..+-.+++..+...+.| ++.|++..|. +.+.  ....++..+.     +  +..+|.+|.
T Consensus        82 ~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa  147 (167)
T 1kao_A           82 YSLVNQ------QSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVSSSEGRALAEE-----W--GCPFMETSA  147 (167)
T ss_dssp             EETTCH------HHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSCHHHHHHHHHH-----H--TSCEEEECT
T ss_pred             EeCCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCCHHHHHHHHHH-----h--CCCEEEecC
Confidence            999853      223   23334455555455777 6677888774 1111  1122222222     1  357888884


Q ss_pred             --HHHHHHHHHHHh
Q 003796          226 --KDELHKFLWLFK  237 (795)
Q Consensus       226 --~~E~~nL~R~Is  237 (795)
                        ...+..|...|.
T Consensus       148 ~~~~gi~~l~~~l~  161 (167)
T 1kao_A          148 KSKTMVDELFAEIV  161 (167)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHH
Confidence              334555555554

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.14  E-value=0.17  Score=47.83  Aligned_cols=149  Identities=10%  Similarity=0.076  Sum_probs=82.5

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhh-ccC-CCCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceE
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQL-SSE-GTGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLV  148 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~-~~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlV  148 (795)
                      ..++-|+|+|.++.+.. +|++.|+..- ... ..+.|    ..++.......+++|+.+|-.. +.. .....+-||.+
T Consensus        10 ~~~~ki~v~G~~~~GKS-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKS-SLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             CEEEEEEEECCTTSCHH-HHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             ccceEEEEECcCCCCHH-HHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            44566999999998876 6733333211 110 11112    2334344445689999987321 222 23456779999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCcc-hhh--hHHHHHHHHhhcccccCCCCeeEEe
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPTD-LKK--RKDLKKMCISSLTSEFPEDCKFYAA  223 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~~-~Kk--~~~~kK~lk~~f~~ef~~~~Klf~l  223 (795)
                      |+++|++..      ..|+ ...++|..+..++.|  .++.|++..|.. ...  ....++..+..       +..+|.+
T Consensus        89 i~v~d~~~~------~s~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~  154 (181)
T 2efe_B           89 IIVFDVTNQ------ASFE-RAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN-------GLFFMET  154 (181)
T ss_dssp             EEEEETTCH------HHHH-HHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-------TCEEEEC
T ss_pred             EEEEECCCH------HHHH-HHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc-------CCEEEEE
Confidence            999999853      2233 234666777777544  356678888851 111  12233333221       4567887


Q ss_pred             CC--HHHHHHHHHHHhhcc
Q 003796          224 DT--KDELHKFLWLFKEQR  240 (795)
Q Consensus       224 ~~--~~E~~nL~R~Is~~k  240 (795)
                      |.  ...+..|...|...-
T Consensus       155 Sa~~g~gi~~l~~~l~~~~  173 (181)
T 2efe_B          155 SAKTATNVKEIFYEIARRL  173 (181)
T ss_dssp             CSSSCTTHHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            74  234566666665443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.06  E-value=0.081  Score=56.16  Aligned_cols=147  Identities=13%  Similarity=0.076  Sum_probs=85.6

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh-ccCCCCCc-----ceEEEecCceeeEEEEeCCCCCh---H-----H----HHH
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL-SSEGTGAL-----SSTVSSSKYRLRTSVLQAPHGDL---V-----G----CME  140 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~~~~g-----~~tv~~~r~k~Ritfie~~~~dl---~-----~----~LD  140 (795)
                      +..|+|+|.++.+++ +|++.|+..- .-.....+     ...+... ....++|+..| .-.   .     .    ...
T Consensus         8 ~~~VaIvG~~nvGKS-TLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTp-G~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            8 CGFIAIVGRPNVGKS-TLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTP-GLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEECSSSSSHH-HHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSS-SCCHHHHHHHHHHHTCCTTS
T ss_pred             CCEEEEECCCCCCHH-HHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECc-CCCccchhhHHHHHHHHHHH
Confidence            457999999998876 7744444321 00010001     1112211 23578888876 432   1     1    134


Q ss_pred             HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF  220 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl  220 (795)
                      +++.||++++++|++        . ++.....+++.|...+.|. +.|++.+|.. ..+......++.. ...+. ...+
T Consensus        85 ~l~~~D~vl~Vvd~~--------~-~~~~~~~i~~~l~~~~~P~-ilvlNK~D~~-~~~~~~~~~l~~l-~~~~~-~~~~  151 (301)
T 1ega_A           85 SIGDVELVIFVVEGT--------R-WTPDDEMVLNKLREGKAPV-ILAVNKVDNV-QEKADLLPHLQFL-ASQMN-FLDI  151 (301)
T ss_dssp             CCCCEEEEEEEEETT--------C-CCHHHHHHHHHHHSSSSCE-EEEEESTTTC-CCHHHHHHHHHHH-HTTSC-CSEE
T ss_pred             HHhcCCEEEEEEeCC--------C-CCHHHHHHHHHHHhcCCCE-EEEEECcccC-ccHHHHHHHHHHH-HHhcC-cCce
Confidence            567899999999997        3 6666778888888888885 4566888862 1122333333322 22222 2468


Q ss_pred             EEeCC--HHHHHHHHHHHhhccc
Q 003796          221 YAADT--KDELHKFLWLFKEQRL  241 (795)
Q Consensus       221 f~l~~--~~E~~nL~R~Is~~k~  241 (795)
                      +.+|.  ...+..|+..|...-+
T Consensus       152 i~iSA~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          152 VPISAETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             EECCTTTTTTHHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            88885  4557777777765443

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.90  E-value=0.11  Score=50.06  Aligned_cols=149  Identities=9%  Similarity=0.109  Sum_probs=78.6

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhh-ccCC-CCCc----ceEEEecCceeeEEEEeCCCCC--hH-H-HHHHHhhhce
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQL-SSEG-TGAL----SSTVSSSKYRLRTSVLQAPHGD--LV-G-CMEMAKVADL  147 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~-~~~g----~~tv~~~r~k~Ritfie~~~~d--l~-~-~LD~aKvADl  147 (795)
                      .++-|+|+|.++.++. +|++.|+..- .... .+.|    ..++.......+++|+.++ ..  +. . .....+-||.
T Consensus        19 ~~~ki~v~G~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKT-CLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA-GQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             CEEEEEEECCTTSSHH-HHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECC-CSHHHHTTTHHHHHTTCCE
T ss_pred             ceEEEEEECCCCCCHH-HHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECC-CchhhhhhhhHHHhcCCCE
Confidence            4567999999998876 7733333211 1111 1112    2233344445688999987 43  21 2 2345678999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeC
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAAD  224 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~l~  224 (795)
                      +|||+|++..   +....+..+-.+++..+...+.| ++.|++..|....+   ....++..+     ..  +..+|.+|
T Consensus        97 iilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~--~~~~~~~S  165 (189)
T 1z06_A           97 VVFVYDMTNM---ASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVPTDLAQKFAD-----TH--SMPLFETS  165 (189)
T ss_dssp             EEEEEETTCH---HHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSCHHHHHHHHH-----HT--TCCEEECC
T ss_pred             EEEEEECcCH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeCHHHHHHHHH-----Hc--CCEEEEEe
Confidence            9999999853   00001223344444444445666 66778888851111   111222221     11  35677777


Q ss_pred             CH-----HHHHHHHHHHhhc
Q 003796          225 TK-----DELHKFLWLFKEQ  239 (795)
Q Consensus       225 ~~-----~E~~nL~R~Is~~  239 (795)
                      ..     ..+..+...|+..
T Consensus       166 a~~~~~~~~i~~l~~~l~~~  185 (189)
T 1z06_A          166 AKNPNDNDHVEAIFMTLAHK  185 (189)
T ss_dssp             SSSGGGGSCHHHHHHHHC--
T ss_pred             CCcCCcccCHHHHHHHHHHH
Confidence            43     4466777666543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.75  E-value=0.14  Score=47.76  Aligned_cols=146  Identities=11%  Similarity=0.034  Sum_probs=79.5

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhcc--CCCCCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEE
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSS--EGTGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVA  149 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~--~~~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVl  149 (795)
                      +++-|+|+|.++.+.. +|++.|+..-..  ...+.|    ..++.......+++++.+|-. ....+ ....+-||.+|
T Consensus         5 ~~~~i~v~G~~~~GKS-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKS-SIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEECCTTSSHH-HHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             cceEEEEECcCCCCHH-HHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4566999999998876 773333322100  111112    223333444578888988731 22332 34567899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCcch-hh--hHHHHHHHHhhcccccCCCCeeEEeC
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPTDL-KK--RKDLKKMCISSLTSEFPEDCKFYAAD  224 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~~~-Kk--~~~~kK~lk~~f~~ef~~~~Klf~l~  224 (795)
                      +++|++..      ..|+. ...++..+..++.|.  ++.|++..|... ..  ....++..+.     +  +..+|.+|
T Consensus        84 ~v~d~~~~------~s~~~-~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~S  149 (170)
T 1z0j_A           84 IVYDITKE------ETFST-LKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS-----I--HAIFVETS  149 (170)
T ss_dssp             EEEETTCH------HHHHH-HHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----T--TCEEEECB
T ss_pred             EEEECcCH------HHHHH-HHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHH-----c--CCEEEEEe
Confidence            99999853      22332 255677777776664  445578888511 11  1112222221     1  46788887


Q ss_pred             CH--HHHHHHHHHHhh
Q 003796          225 TK--DELHKFLWLFKE  238 (795)
Q Consensus       225 ~~--~E~~nL~R~Is~  238 (795)
                      ..  ..+..|...|..
T Consensus       150 a~~~~~i~~l~~~i~~  165 (170)
T 1z0j_A          150 AKNAININELFIEISR  165 (170)
T ss_dssp             TTTTBSHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHH
Confidence            42  335555555543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=94.67  E-value=0.25  Score=58.70  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=45.0

Q ss_pred             eeEEEEeCCCC------ChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHH-HHHHhcCCCceEEEeccCCc
Q 003796          123 LRTSVLQAPHG------DLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCL-SVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       123 ~Ritfie~~~~------dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L-~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ..++|+..| +      ....+...++-||+||+|+|++.+        +.....++| ..+...|.| ++.|++..|.
T Consensus       174 ~~l~LiDTP-Gl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~--------~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl  242 (695)
T 2j69_A          174 KGIEIVDSP-GLNDTEARNELSLGYVNNCHAILFVMRASQP--------CTLGERRYLENYIKGRGLT-VFFLVNAWDQ  242 (695)
T ss_dssp             TTEEEEECC-CHHHHHTCHHHHTHHHHSSSEEEEEEETTST--------TCHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred             CCeEEEECC-CCCchhhHHHHHHHHHHhCCEEEEEEeCCCc--------cchhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence            368888887 4      234456777889999999999854        444445555 466777888 8889998885

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.62  E-value=0.18  Score=46.74  Aligned_cols=108  Identities=11%  Similarity=0.067  Sum_probs=61.0

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCcc---eEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhceEEEe
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGALS---STVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADLVAFV  151 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADlVll~  151 (795)
                      ++-|+|+|.++.+.. +|++.|+..- .. +..+.+.   .++........+.|+.+|- .....+ -...+-||.+|++
T Consensus         3 ~~ki~v~G~~~~GKs-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKS-ALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHH-HHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHH-HHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            456899999998876 7733333211 00 1111111   1222333356788888863 123333 3456779999999


Q ss_pred             eeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          152 ASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       152 idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +|++..      ..|+   .+-.++++.+...+.| ++.|++..|.
T Consensus        82 ~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl  120 (167)
T 1c1y_A           82 YSITAQ------STFNDLQDLREQILRVKDTEDVP-MILVGNKCDL  120 (167)
T ss_dssp             EETTCH------HHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTC
T ss_pred             EECCCH------HHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccc
Confidence            999842      2233   2334444444445766 6677888885

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.60  E-value=0.095  Score=58.88  Aligned_cols=131  Identities=8%  Similarity=0.093  Sum_probs=81.7

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--------cceEEEecCceeeEEEEeCCCC-----------
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--------LSSTVSSSKYRLRTSVLQAPHG-----------  133 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--------g~~tv~~~r~k~Ritfie~~~~-----------  133 (795)
                      ...+.-|+|+|.++.+.. +|    +..|+..+.   ..        ...++...  .++++++..+ .           
T Consensus       192 ~~~~~ki~ivG~~~vGKS-sl----in~l~~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~l~DT~-G~~~~~~~~~~~  263 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKS-SL----VNAMLGEERVIVSNVAGTTRDAVDTSFTYN--QQEFVIVDTA-GMRKKGKVYETT  263 (456)
T ss_dssp             CTTCEEEEEECSTTSSHH-HH----HHHHHTSTTEEECC------CTTSEEEEET--TEEEEETTGG-GTTTBTTBCCCC
T ss_pred             ccccceeEEecCCCCCHH-HH----HHHHhCCCccccCCCCCeEEEEEEEEEEEC--CceEEEEECC-CCCcCcccchHH
Confidence            455677999999998775 77    444433221   11        11223333  2578888776 3           


Q ss_pred             ChHH---HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc---hhhhHHHHHHHH
Q 003796          134 DLVG---CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD---LKKRKDLKKMCI  207 (795)
Q Consensus       134 dl~~---~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~---~Kk~~~~kK~lk  207 (795)
                      .-.+   .+.+.+-||++|+++|++.+        +.....+++..+...|.|- +.|++..|..   .....+.++.++
T Consensus       264 e~~~~~~~~~~~~~ad~~llviD~~~~--------~~~~~~~~~~~~~~~~~~~-ilv~NK~Dl~~~~~~~~~~~~~~~~  334 (456)
T 4dcu_A          264 EKYSVLRALKAIDRSEVVAVVLDGEEG--------IIEQDKRIAGYAHEAGKAV-VIVVNKWDAVDKDESTMKEFEENIR  334 (456)
T ss_dssp             SHHHHHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCEE-EEEEECGGGSCCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEeCCCC--------cCHHHHHHHHHHHHcCCCE-EEEEEChhcCCCchHHHHHHHHHHH
Confidence            3333   34566789999999999954        7778889999999999875 4556766641   112234555555


Q ss_pred             hhcccccCCCCeeEEeCC
Q 003796          208 SSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       208 ~~f~~ef~~~~Klf~l~~  225 (795)
                      +.+..  ..++.+|.+|.
T Consensus       335 ~~~~~--~~~~~~~~~SA  350 (456)
T 4dcu_A          335 DHFQF--LDYAPILFMSA  350 (456)
T ss_dssp             HHCGG--GTTSCEEECCT
T ss_pred             Hhccc--CCCCCEEEEcC
Confidence            55432  23578888883

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=94.48  E-value=1.4  Score=52.28  Aligned_cols=119  Identities=14%  Similarity=0.105  Sum_probs=74.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHh---hccC----------C--C-C-C-------cceEEEecCceeeEEEEeCCC-C
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQ---LSSE----------G--T-G-A-------LSSTVSSSKYRLRTSVLQAPH-G  133 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~---~~~~----------~--~-~-~-------g~~tv~~~r~k~Ritfie~~~-~  133 (795)
                      .+.|+|+|.++.++. +|++.|+..   +.+.          +  . + .       ...++...  ..++.|+.+|- .
T Consensus        10 ~~~I~IvG~~~aGKS-TL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~   86 (693)
T 2xex_A           10 TRNIGIMAHIDAGKT-TTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGHV   86 (693)
T ss_dssp             EEEEEEECCGGGTHH-HHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCCS
T ss_pred             ceEEEEECCCCCCHH-HHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCCc
Confidence            467999998887765 675555532   1100          0  0 0 0       11222222  36788998873 2


Q ss_pred             C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh
Q 003796          134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS  209 (795)
Q Consensus       134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~  209 (795)
                      + ...+..+.+.||.+|+++|++.|        +...+..++..+..+|+|.+ .|++.+|........+...++..
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g--------~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~~~~~~~~~~~l~~~  154 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSG--------VEPQTETVWRQATTYGVPRI-VFVNKMDKLGANFEYSVSTLHDR  154 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCC--------CcHHHHHHHHHHHHcCCCEE-EEEECCCccccchHHHHHHHHHH
Confidence            2 34567788999999999999954        66778889999999999854 56888885112223344444444

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.48  E-value=0.18  Score=47.55  Aligned_cols=107  Identities=12%  Similarity=0.011  Sum_probs=64.1

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecC-ceeeEEEEeCCCCC-hH-HHHHHH
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSK-YRLRTSVLQAPHGD-LV-GCMEMA  142 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r-~k~Ritfie~~~~d-l~-~~LD~a  142 (795)
                      ...+.-|+|+|.++.+.. +|    +..|+....      +.|    ..++..+. ...+++++.++-.. .. -.....
T Consensus         3 ~~~~~ki~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~   77 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKT-SL----TTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYI   77 (178)
T ss_dssp             CCCEEEEEEECCTTSSHH-HH----HHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHH
T ss_pred             CCceEEEEEECcCCCCHH-HH----HHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHH
Confidence            455677999999998876 77    444432211      112    22333332 34688899886322 11 233456


Q ss_pred             hhhceEEEeeeCCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCc
Q 003796          143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPT  194 (795)
Q Consensus       143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a-----qG~P~vigVl~~Ld~  194 (795)
                      +-||.+|+|+|++..      ..|+. ...++..+..     .+.|.++.|++..|.
T Consensus        78 ~~~d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl  127 (178)
T 2hxs_A           78 YGAQGVLLVYDITNY------QSFEN-LEDWYTVVKKVSEESETQPLVALVGNKIDL  127 (178)
T ss_dssp             TTCSEEEEEEETTCH------HHHHT-HHHHHHHHHHHHHHHTCCCEEEEEEECGGG
T ss_pred             hhCCEEEEEEECCCH------HHHHH-HHHHHHHHHHHhcccCCCCeEEEEEEcccc
Confidence            789999999999853      22322 1234444443     378888888998885

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.47  E-value=0.19  Score=48.46  Aligned_cols=136  Identities=13%  Similarity=0.160  Sum_probs=74.1

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCC-------CCCcceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhc
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-------TGALSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVAD  146 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-------~~~g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvAD  146 (795)
                      ..++.-|+|+|.++.+.. +|    +..|+...       .+.|...........+++|+..+- ..+..+. ...+-||
T Consensus        14 ~~~~~ki~v~G~~~~GKS-sl----~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKT-TI----INQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             --CEEEEEEECCTTSCHH-HH----HHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             CCCCcEEEEECCCCCCHH-HH----HHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            345566999999998876 67    55554322       111422222222356888888762 2233333 3367799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHh----------cCCCceEEEeccCCc-chhhhHHHHHHHHhhcc-ccc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRS----------LGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLT-SEF  214 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~a----------qG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~-~ef  214 (795)
                      .||||+|++..      ..|+.....+..+++.          .+.| ++.|++..|. +......+.+.+..... .. 
T Consensus        89 ~ii~v~D~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-  160 (199)
T 4bas_A           89 AVIFVVDSSDH------LRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAKTAAELVEILDLTTLMGD-  160 (199)
T ss_dssp             EEEEEEETTCG------GGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCCCHHHHHHHHTHHHHHTT-
T ss_pred             EEEEEEECCcH------HHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCCCHHHHHHHhcchhhccC-
Confidence            99999999854      3355444444444433          1555 5667888885 11112334444332211 11 


Q ss_pred             CCCCeeEEeCC
Q 003796          215 PEDCKFYAADT  225 (795)
Q Consensus       215 ~~~~Klf~l~~  225 (795)
                       .+..+|.+|.
T Consensus       161 -~~~~~~~~Sa  170 (199)
T 4bas_A          161 -HPFVIFASNG  170 (199)
T ss_dssp             -SCEEEEECBT
T ss_pred             -CeeEEEEeeC
Confidence             2567788774

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=94.36  E-value=0.15  Score=60.00  Aligned_cols=82  Identities=15%  Similarity=0.229  Sum_probs=62.4

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR  199 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~  199 (795)
                      ..+|.+|-+|- -| ...+.-++.++|-+|+||||..|        ++..|..+++.+...|+|.+ .+++.+|......
T Consensus        66 ~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G--------V~~qT~~v~~~a~~~~lp~i-~~INKmDr~~a~~  136 (638)
T 3j25_A           66 NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG--------VQAQTRILFHALRKMGIPTI-FFINKIDQNGIDL  136 (638)
T ss_dssp             SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT--------TCSHHHHHHHHHHHHTCSCE-ECCEECCSSSCCS
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCCeE-EEEeccccccCCH
Confidence            46899999973 34 45688899999999999999965        88899999999999999975 5678888421223


Q ss_pred             HHHHHHHHhhccc
Q 003796          200 KDLKKMCISSLTS  212 (795)
Q Consensus       200 ~~~kK~lk~~f~~  212 (795)
                      ..+...++.+|..
T Consensus       137 ~~~~~~i~~~l~~  149 (638)
T 3j25_A          137 STVYQDIKEKLSA  149 (638)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCC
Confidence            3455556655543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.18  E-value=0.23  Score=48.05  Aligned_cols=103  Identities=9%  Similarity=0.078  Sum_probs=59.9

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhce
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADL  147 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADl  147 (795)
                      +-|+|+|.++.++. +|    +..|+....      +.|    ..++.....+.+++++.++-. .... .....+-||.
T Consensus        27 ~ki~vvG~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           27 LQVIIIGSRGVGKT-SL----MERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             EEEEEECSTTSSHH-HH----HHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             eEEEEECCCCCCHH-HH----HHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            34899999998876 77    555543221      112    223333434467888988732 2333 3456688999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      +|||+|++.+      ..|+. ...++..++....  ..++.|++..|.
T Consensus       102 iilV~D~~~~------~s~~~-~~~~~~~i~~~~~~~~piilV~NK~Dl  143 (192)
T 2il1_A          102 IILVYDITKK------ETFDD-LPKWMKMIDKYASEDAELLLVGNKLDC  143 (192)
T ss_dssp             EEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCcEEEEEECccc
Confidence            9999999853      22322 1234455555432  235667888775

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=94.05  E-value=0.4  Score=55.34  Aligned_cols=88  Identities=13%  Similarity=0.114  Sum_probs=64.1

Q ss_pred             cceEEEecCceeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEe
Q 003796          112 LSSTVSSSKYRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI  189 (795)
Q Consensus       112 g~~tv~~~r~k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl  189 (795)
                      ..+++.-.  ..+|.+|-+|- -| ...+.-+..++|-+|+||||..|        ++..|..+++.+..+|+|.+ .++
T Consensus        91 ~~~~~~~~--~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~G--------V~~qT~~v~~~a~~~~lp~i-~fI  159 (548)
T 3vqt_A           91 SVMQFPYR--DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--------VEAQTRKLMDVCRMRATPVM-TFV  159 (548)
T ss_dssp             TEEEEEET--TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCCEE-EEE
T ss_pred             ceEEEEEC--CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCC--------cccccHHHHHHHHHhCCceE-EEE
Confidence            34445443  47899999983 23 34588888999999999999965        89999999999999999975 567


Q ss_pred             ccCCcchhhhHHHHHHHHhhc
Q 003796          190 RDLPTDLKKRKDLKKMCISSL  210 (795)
Q Consensus       190 ~~Ld~~~Kk~~~~kK~lk~~f  210 (795)
                      +.+|.....-..+...++..|
T Consensus       160 NK~Dr~~ad~~~~~~~i~~~l  180 (548)
T 3vqt_A          160 NKMDREALHPLDVMADIEQHL  180 (548)
T ss_dssp             ECTTSCCCCHHHHHHHHHHHH
T ss_pred             ecccchhcchhHhhhhhhhhc
Confidence            888842122234555555554

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.00  E-value=0.77  Score=44.90  Aligned_cols=73  Identities=18%  Similarity=0.237  Sum_probs=44.4

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CC--cceEEEecCc-eeeEEEEeCCCCC--hHH-HHHH-Hhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA--LSSTVSSSKY-RLRTSVLQAPHGD--LVG-CMEM-AKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~--g~~tv~~~r~-k~Ritfie~~~~d--l~~-~LD~-aKvA  145 (795)
                      .+.-|+|+|.++.+.. +|    +..|+....     +.  ...++..... ..+++++..| ..  +.+ +... .+-|
T Consensus         6 ~~~ki~vvG~~~~GKT-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~-G~~~~~~~~~~~~~~~~   79 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKT-LL----FVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLP-GHESLRFQLLDRFKSSA   79 (214)
T ss_dssp             --CEEEEECSTTSSHH-HH----HHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECC-CCHHHHHHHHHHHGGGE
T ss_pred             CCCEEEEECCCCCCHH-HH----HHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECC-CChhHHHHHHHHHHhhC
Confidence            3456899999998876 67    444432221     11  2223333321 3678999987 43  333 4443 6789


Q ss_pred             ceEEEeeeCCC
Q 003796          146 DLVAFVASASS  156 (795)
Q Consensus       146 DlVll~idas~  156 (795)
                      |.+||++|++.
T Consensus        80 ~~~i~v~d~~~   90 (214)
T 2fh5_B           80 RAVVFVVDSAA   90 (214)
T ss_dssp             EEEEEEEETTT
T ss_pred             CEEEEEEECCC
Confidence            99999999974

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=93.90  E-value=0.66  Score=44.91  Aligned_cols=147  Identities=10%  Similarity=-0.026  Sum_probs=78.0

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEE
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVA  149 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVl  149 (795)
                      ..++-|+|+|+++.+.. +|    +..|+......     |...........+++++.+|-. .+..+ ....+-||.+|
T Consensus        27 ~~~~ki~v~G~~~vGKS-sL----i~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKT-TI----LYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHH-HH----HHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHH-HH----HHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            44567999999998875 77    55554322211     3211111112468888988731 22222 24567899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                      +|+|++..      ..|+.....+..+++..   +.| ++.|++..|.... ....+.+.+...+...  .+..+|.+|.
T Consensus       102 lv~D~~~~------~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~i~~~~~~~~~~~--~~~~~~~~SA  172 (192)
T 2b6h_A          102 FVVDSNDR------ERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMPVSELTDKLGLQHLRS--RTWYVQATCA  172 (192)
T ss_dssp             EEEETTCG------GGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHHHHHHTTGGGCSS--CCEEEEECBT
T ss_pred             EEEECCCH------HHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCCHHHHHHHhCcccccC--CceEEEECcC
Confidence            99999853      33555445555555443   444 5667888885111 1233333332221111  2345777773


Q ss_pred             --HHHHHHHHHHHh
Q 003796          226 --KDELHKFLWLFK  237 (795)
Q Consensus       226 --~~E~~nL~R~Is  237 (795)
                        ...+..|...|.
T Consensus       173 ~~g~gi~~l~~~l~  186 (192)
T 2b6h_A          173 TQGTGLYDGLDWLS  186 (192)
T ss_dssp             TTTBTHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHH
Confidence              223445555444

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.83  E-value=0.5  Score=43.34  Aligned_cols=107  Identities=7%  Similarity=0.032  Sum_probs=59.4

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhc-c-CCCCCc---ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEe
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLS-S-EGTGAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFV  151 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~-~-~~~~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~  151 (795)
                      +.-|+|+|.++.+.. +|++.++..-. . +..+.+   ..++........++++.+|.. ....+.. ..+-||.+|++
T Consensus         3 ~~~i~v~G~~~~GKs-sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKS-ALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHH-HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHH-HHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            345899999988876 67333332210 0 011111   122333434567888988732 2344443 67889999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT  194 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~  194 (795)
                      +|++..      ..|+.. .+++..+..    .+.| ++.|++..|.
T Consensus        82 ~d~~~~------~~~~~~-~~~~~~i~~~~~~~~~p-~iiv~nK~Dl  120 (166)
T 2ce2_X           82 FAINNT------KSFEDI-HQYREQIKRVKDSDDVP-MVLVGNKSDL  120 (166)
T ss_dssp             EETTCH------HHHHHH-HHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred             EECCCH------HHHHHH-HHHHHHHHHhcCCCCCc-EEEEEEchhh
Confidence            999842      223222 333333333    3665 5677888874

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=93.78  E-value=0.76  Score=49.21  Aligned_cols=133  Identities=9%  Similarity=0.019  Sum_probs=75.6

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEEEee
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVA  152 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVll~i  152 (795)
                      +-|+|+|.++.++. +|    +..|+......     +...........+++|+..+- ..+.. ....++-||.||||+
T Consensus       166 ~kI~ivG~~~vGKS-sL----l~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~  240 (329)
T 3o47_A          166 MRILMVGLDAAGKT-TI----LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV  240 (329)
T ss_dssp             EEEEEEESTTSSHH-HH----HHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred             ceEEEECCCCccHH-HH----HHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            36999999998886 67    66665443221     222222221246788898862 12222 334578899999999


Q ss_pred             eCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          153 SASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                      |++..      ..|+.....+..+++..+.+  .++.|++..|. +......+.+.+...+..  ..+..+|.+|.
T Consensus       241 D~~~~------~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~--~~~~~~~~vSA  308 (329)
T 3o47_A          241 DSNDR------ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR--HRNWYIQATCA  308 (329)
T ss_dssp             ETTCS------SSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCC--SSCEEEEECBT
T ss_pred             ECCch------HHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhh--cCCCEEEEEEC
Confidence            99742      34666666677777665433  25667888885 111223344433322211  12456777774

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.71  E-value=1.1  Score=41.37  Aligned_cols=103  Identities=11%  Similarity=0.042  Sum_probs=60.4

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hccCCCCCcc--eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEEEeeeCCC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LSSEGTGALS--STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFVASASS  156 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~g~--~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVll~idas~  156 (795)
                      |+|+|.++.+.. +|++.++.. +.....+.|.  .++..  ...++.++..|-. .+..+. ...+-||.+|+++|++.
T Consensus         3 i~~~G~~~~GKs-sl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   79 (164)
T 1r8s_A            3 ILMVGLDAAGKT-TILYKLKLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   79 (164)
T ss_dssp             EEEECSTTSSHH-HHHHHHHHHCSSCCCCCSSCCEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred             EEEECCCCCCHH-HHHHHHHcCCcCcccCcCceeEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence            789999998875 674443321 1221112132  22332  2468899988732 244433 35678999999999985


Q ss_pred             ccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          157 FSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       157 g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      .      ..|+.....+..++...   +.| ++.|++..|.
T Consensus        80 ~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  113 (164)
T 1r8s_A           80 R------ERVNEAREELMRMLAEDELRDAV-LLVFANKQDL  113 (164)
T ss_dssp             G------GGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred             H------HHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCC
Confidence            3      33554444455555433   443 5667888885

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.70  E-value=0.4  Score=44.41  Aligned_cols=143  Identities=10%  Similarity=0.051  Sum_probs=77.7

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKV  144 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKv  144 (795)
                      ..++-|+|+|.++.+.. +|    +..|+...      .+.|    ..++.......+++++.+|-. .... .....+-
T Consensus         4 ~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   78 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKS-SL----VLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG   78 (170)
T ss_dssp             EEEEEEEEECSTTSSHH-HH----HHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred             CceEEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccC
Confidence            34566999999998876 67    44443211      1112    223333434568888888632 2222 3445677


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCce--EEEeccCCcchhh---hHHHHHHHHhhcccccCCCCe
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPST--AVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCK  219 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~v--igVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~K  219 (795)
                      ||.+|+++|++..      ..|+. ..++|..+..+..+.+  +.|++..|....+   ....++..+.       .+..
T Consensus        79 ~d~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~  144 (170)
T 1r2q_A           79 AQAAIVVYDITNE------ESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-------NSLL  144 (170)
T ss_dssp             CSEEEEEEETTCH------HHHHH-HHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCE
T ss_pred             CCEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH-------cCCe
Confidence            9999999999853      22432 2345566665544443  3445887751111   1223332222       1457


Q ss_pred             eEEeCCH--HHHHHHHHHHhh
Q 003796          220 FYAADTK--DELHKFLWLFKE  238 (795)
Q Consensus       220 lf~l~~~--~E~~nL~R~Is~  238 (795)
                      +|.+|..  ..+..|...|..
T Consensus       145 ~~~~Sa~~g~gi~~l~~~i~~  165 (170)
T 1r2q_A          145 FMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHH
Confidence            7777742  335555555544

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=93.66  E-value=0.37  Score=46.56  Aligned_cols=141  Identities=9%  Similarity=0.019  Sum_probs=79.0

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhc
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVAD  146 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvAD  146 (795)
                      ++-|+|+|.++.+.. +|    +..|+...      .+.|    ..++.......+++|+.+|-.. +.. .....+-||
T Consensus        23 ~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKS-SI----VCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             EEEEEEEECTTSSHH-HH----HHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             ceEEEEECcCCCCHH-HH----HHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            456999999998876 77    44443322      1112    2223334345688999887321 222 345678899


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCcch-hh--hHHHHHHHHhhcccccCCCCeeE
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPTDL-KK--RKDLKKMCISSLTSEFPEDCKFY  221 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~~~-Kk--~~~~kK~lk~~f~~ef~~~~Klf  221 (795)
                      .+|+++|++..      ..|+. ...++..++.++.  ..++.|++..|... +.  ....++.++.     +  +..+|
T Consensus        98 ~iilV~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~  163 (192)
T 2fg5_A           98 AAVIVYDITKQ------DSFYT-LKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-----I--GAIVV  163 (192)
T ss_dssp             EEEEEEETTCT------HHHHH-HHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-----T--TCEEE
T ss_pred             EEEEEEeCCCH------HHHHH-HHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEE
Confidence            99999999853      22332 2455666666542  23566778877511 11  1233333332     1  46788


Q ss_pred             EeCC--HHHHHHHHHHHhh
Q 003796          222 AADT--KDELHKFLWLFKE  238 (795)
Q Consensus       222 ~l~~--~~E~~nL~R~Is~  238 (795)
                      .+|.  ...+..|...|..
T Consensus       164 ~~Sa~~~~gi~~l~~~l~~  182 (192)
T 2fg5_A          164 ETSAKNAINIEELFQGISR  182 (192)
T ss_dssp             ECBTTTTBSHHHHHHHHHH
T ss_pred             EEeCCCCcCHHHHHHHHHH
Confidence            8874  2345555555554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=93.64  E-value=0.7  Score=44.28  Aligned_cols=142  Identities=13%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCC--C-----CCcce--EEEecCceeeEEEEeCCC-CChHHH-HHHHhhhc
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG--T-----GALSS--TVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVAD  146 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~--~-----~~g~~--tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvAD  146 (795)
                      .+.-|+|+|.++.+.. +|    +..|+...  .     +.|..  ++...  ..++.++.++- ..+..+ ....+-||
T Consensus        20 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKT-TI----INKLKPSNAQSQNILPTIGFSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQ   92 (190)
T ss_dssp             -CEEEEEEECTTSSHH-HH----HHHTSCGGGCCSSCCCCSSEEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred             CccEEEEECCCCCCHH-HH----HHHHhcCCCCCCCcCCccceeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            4566999999998876 67    55554322  1     11322  22223  36788888863 233333 24567899


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCcchh-hhHHHHHHHH-hhcccccCCCCe
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPTDLK-KRKDLKKMCI-SSLTSEFPEDCK  219 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~~~K-k~~~~kK~lk-~~f~~ef~~~~K  219 (795)
                      .+|+|+|++..      ..|+.....+..+++..     +.| ++.|++..|.... .....++.+. ..+.   ..+..
T Consensus        93 ~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~  162 (190)
T 2h57_A           93 AIIFVIDSSDR------LRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVTSVKVSQLLCLENIK---DKPWH  162 (190)
T ss_dssp             EEEEEEETTCH------HHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCCHHHHHHHHTGGGCC---SSCEE
T ss_pred             EEEEEEECCCH------HHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCCHHHHHHHhChhhcc---CCceE
Confidence            99999999853      23554444555555543     444 5677888885111 1233444332 1111   12567


Q ss_pred             eEEeCCH--HHHHHHHHHH
Q 003796          220 FYAADTK--DELHKFLWLF  236 (795)
Q Consensus       220 lf~l~~~--~E~~nL~R~I  236 (795)
                      +|.+|..  ..+..|...|
T Consensus       163 ~~~~Sa~~~~gi~~l~~~l  181 (190)
T 2h57_A          163 ICASDAIKGEGLQEGVDWL  181 (190)
T ss_dssp             EEECBTTTTBTHHHHHHHH
T ss_pred             EEEccCCCCcCHHHHHHHH
Confidence            8888842  2344444444

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.56  E-value=0.43  Score=46.73  Aligned_cols=104  Identities=10%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCC------Ccc---eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------ALS---STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL  147 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g~---~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl  147 (795)
                      ++-|+|+|.++.++. +|    +..|......      .+.   ..+.......+++++.+|-. ....+ ....+-||.
T Consensus        25 ~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (207)
T 2fv8_A           25 RKKLVVVGDGACGKT-CL----LIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (207)
T ss_dssp             EEEEEEEECTTSSHH-HH----HHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred             CcEEEEECcCCCCHH-HH----HHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence            456999999998886 77    4444332211      111   22333444467888888631 12222 234567999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      +|+++|++..      ..|+.....++..++..  +.| ++.|++..|.
T Consensus       100 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  141 (207)
T 2fv8_A          100 ILMCFSVDSP------DSLENIPEKWVPEVKHFCPNVP-IILVANKKDL  141 (207)
T ss_dssp             EEEEEETTCH------HHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred             EEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhh
Confidence            9999999853      23444435566666665  666 5667888775

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.54  E-value=0.51  Score=44.70  Aligned_cols=111  Identities=12%  Similarity=0.091  Sum_probs=62.8

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhc--cCCCCCc---ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceE
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLS--SEGTGAL---SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLV  148 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~--~~~~~~g---~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlV  148 (795)
                      ..+.+-|+|+|.++.+.. +|++.|+....  .+..+.+   ...+........++++.++-.. ... .-...+-||.+
T Consensus        15 ~~~~~ki~v~G~~~~GKS-sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKS-ALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCEEEEEEECSTTSSHH-HHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHH-HHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            455677999999998876 67433332210  0111112   2223334344567778876311 222 23346779999


Q ss_pred             EEeeeCCCcccccccccc---ChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYI---DSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~f---e~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      |+++|++..      ..|   ..+-.++++.+...+.| ++.|++..|.
T Consensus        94 i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  135 (183)
T 3kkq_A           94 LIVYSVTDK------ASFEHVDRFHQLILRVKDRESFP-MILVANKVDL  135 (183)
T ss_dssp             EEEEETTCH------HHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTC
T ss_pred             EEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCc
Confidence            999999853      223   33444555555556666 5667888774

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=93.46  E-value=0.65  Score=46.80  Aligned_cols=144  Identities=10%  Similarity=0.048  Sum_probs=74.8

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cce--EEEecCceeeEEEEeCCCCC----------
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSS--TVSSSKYRLRTSVLQAPHGD----------  134 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~--tv~~~r~k~Ritfie~~~~d----------  134 (795)
                      ..++-|+|+|.++.+.. +|    ++.|++.....          .+.  ++...  .++++++..| .-          
T Consensus        27 ~~~~~i~lvG~~g~GKS-tl----in~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTp-G~~~~~~~~~~~   98 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKS-AT----GNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTP-GIFDTEVPNAET   98 (239)
T ss_dssp             -CEEEEEEECCTTSSHH-HH----HHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECC-SCC-----CHHH
T ss_pred             CCceEEEEECCCCCCHH-HH----HHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECC-CccCCCCCHHHH
Confidence            34567999999998886 77    44444332211          111  22222  3688999887 41          


Q ss_pred             hHHHHHHHhh----hceEEEeeeCCCccccccccccChHHHHHHHHHH----hcCCCceEEEeccCCc-chhhhHH----
Q 003796          135 LVGCMEMAKV----ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR----SLGLPSTAVLIRDLPT-DLKKRKD----  201 (795)
Q Consensus       135 l~~~LD~aKv----ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~----aqG~P~vigVl~~Ld~-~~Kk~~~----  201 (795)
                      ...+..+...    +|.+|+|+|++.         ++.+..+.|..+.    ..-...++.|+++.|. ......+    
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~v~d~~~---------~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~  169 (239)
T 3lxx_A           99 SKEIIRCILLTSPGPHALLLVVPLGR---------YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLRE  169 (239)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEEEETTC---------CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-----------
T ss_pred             HHHHHHHHHhcCCCCcEEEEEeeCCC---------CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHh
Confidence            2234444433    599999999873         3334444444443    1112246777888774 1111110    


Q ss_pred             HHHHHHhhcccccCCCCeeEEeCCH-------HHHHHHHHHHhhcc
Q 003796          202 LKKMCISSLTSEFPEDCKFYAADTK-------DELHKFLWLFKEQR  240 (795)
Q Consensus       202 ~kK~lk~~f~~ef~~~~Klf~l~~~-------~E~~nL~R~Is~~k  240 (795)
                      ..+.++..+. ++  +.+.+.+++.       ..+..|+..|..+-
T Consensus       170 ~~~~l~~l~~-~~--~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          170 APEDIQDLMD-IF--GDRYCALNNKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             -CHHHHHHHH-HH--SSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHH-Hc--CCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence            0112332222 22  3455556543       45777777776554

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.45  E-value=0.75  Score=43.00  Aligned_cols=103  Identities=9%  Similarity=-0.011  Sum_probs=60.3

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChH-HHHHHHhhhc
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLV-GCMEMAKVAD  146 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~-~~LD~aKvAD  146 (795)
                      .+-|+|+|.++.+.. +|    ++.|.....      +.|    ...+.......++.|+.+|-. .+. ......+-||
T Consensus        15 ~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKS-CL----LHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             EEEEEEECSTTSSHH-HH----HHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             ceEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            456999999998876 77    444432221      112    223334444568888988731 122 2445677899


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      .+|+++|++..      ..|+. ...+|..+..+   +.| ++.|++..|.
T Consensus        90 ~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~p-iilv~nK~Dl  132 (179)
T 1z0f_A           90 GALMVYDITRR------STYNH-LSSWLTDARNLTNPNTV-IILIGNKADL  132 (179)
T ss_dssp             EEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred             EEEEEEeCcCH------HHHHH-HHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence            99999999853      22322 22344444443   333 6777888885

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.28  E-value=0.31  Score=46.22  Aligned_cols=109  Identities=9%  Similarity=0.048  Sum_probs=59.8

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhc-c-CCCCC---cceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEE
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLS-S-EGTGA---LSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAF  150 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~-~-~~~~~---g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll  150 (795)
                      .++-|+|+|.++.+.. +|++.|+..-- . +..+.   ....+........+.|+.+|- .....+. ...+-||.+|+
T Consensus         3 ~~~ki~v~G~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKS-ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHH-HHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHH-HHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            4566999999998876 77433332110 0 11111   112233344455688888873 1233333 34677999999


Q ss_pred             eeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++|++..      ..|+   .+-.++++.+...+.| ++.|++..|.
T Consensus        82 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl  121 (189)
T 4dsu_A           82 VFAINNT------KSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDL  121 (189)
T ss_dssp             EEETTCH------HHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTS
T ss_pred             EEECCCH------HHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccC
Confidence            9999853      2232   2333444444444665 5667888775

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.13  E-value=0.37  Score=44.63  Aligned_cols=107  Identities=8%  Similarity=0.036  Sum_probs=59.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhceEEE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLVAF  150 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADlVll  150 (795)
                      ++-|+|+|+++.+.. +|++.|+..- .. ...+.|    ..++..+....+++++.+|-. .... .....+-||.+|+
T Consensus         3 ~~~i~v~G~~~~GKs-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKS-SIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEECSTTSSHH-HHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEECCCCCCHH-HHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            456999999998875 6733333211 11 111112    222333444568899988731 1222 3445678999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      ++|++..      ..|+. ...++..+..+   +.| ++.|++..|.
T Consensus        82 v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~p-iilv~nK~Dl  120 (170)
T 1ek0_A           82 VYDVTKP------QSFIK-ARHWVKELHEQASKDII-IALVGNKIDX  120 (170)
T ss_dssp             EEETTCH------HHHHH-HHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred             EEecCCh------HHHHH-HHHHHHHHHHhcCCCCc-EEEEEECCCc
Confidence            9999853      22322 23344444443   444 5566787774

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.10  E-value=0.72  Score=42.72  Aligned_cols=103  Identities=9%  Similarity=0.045  Sum_probs=58.3

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CC-cce---EEEecCceeeEEEEeCCC-CChHHH-HHHHhhhce
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA-LSS---TVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADL  147 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~-g~~---tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADl  147 (795)
                      ++-|+|+|.++.+.. +|    +..|.....     .. +..   .+........++|+.+|- .+...+ ....+-||.
T Consensus         3 ~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   77 (172)
T 2erx_A            3 DYRVAVFGAGGVGKS-SL----VLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHA   77 (172)
T ss_dssp             EEEEEEECCTTSSHH-HH----HHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSE
T ss_pred             ceEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCE
Confidence            456899999998876 67    444433211     11 211   122233345788998873 223333 345677999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a-----qG~P~vigVl~~Ld~  194 (795)
                      +|+++|++..      ..|+.. ..++..+..     .+.| ++.|++..|.
T Consensus        78 ~i~v~d~~~~------~~~~~~-~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl  121 (172)
T 2erx_A           78 FILVYSITSR------QSLEEL-KPIYEQICEIKGDVESIP-IMLVGNKCDE  121 (172)
T ss_dssp             EEEEEETTCH------HHHHTT-HHHHHHHHHHHC---CCC-EEEEEECGGG
T ss_pred             EEEEEECcCH------HHHHHH-HHHHHHHHHHhCCCCCCC-EEEEEEcccc
Confidence            9999999853      223221 223333332     2566 6778888885

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=93.05  E-value=0.61  Score=45.38  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhc
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVAD  146 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvAD  146 (795)
                      .++-|+|+|.++.+.. +|    +..|+....      +.+   ...+.......+++++.+|-. .+..+. ...+-||
T Consensus        24 ~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   98 (201)
T 2gco_A           24 IRKKLVIVGDGACGKT-CL----LIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (201)
T ss_dssp             EEEEEEEEESTTSSHH-HH----HHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             cceEEEEECCCCCCHH-HH----HHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence            3456999999998876 67    444433211      111   123334444457888887621 122222 2456799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      .+|+++|++..      ..|+.....++..++.+  +.| ++.|++..|.
T Consensus        99 ~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  141 (201)
T 2gco_A           99 VILMCFSIDSP------DSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL  141 (201)
T ss_dssp             EEEEEEETTCH------HHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred             EEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHh
Confidence            99999998852      23554445566666665  666 5667787775

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=92.99  E-value=0.4  Score=45.77  Aligned_cols=145  Identities=10%  Similarity=0.050  Sum_probs=78.7

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCc--ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GAL--SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL  147 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g--~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl  147 (795)
                      ..+.-|+|+|.++.+.. +|    +..|.....     +.|  ..++...  ..+++++..+-. .+..+ ....+-||.
T Consensus        19 ~~~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKT-TI----LYQFSMNEVVHTSPTIGSNVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             --CEEEEEEEETTSSHH-HH----HHHHHTTSCEEEECCSSSSCEEEEET--TEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CceeEEEEECCCCCCHH-HH----HHHHhcCCCCccCCcCceeeEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            34566999999998875 77    444433221     112  2233333  367888888621 12222 345678999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCcch-hhhHHHHHHHHhhcccccCCCCeeEEe
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPTDL-KKRKDLKKMCISSLTSEFPEDCKFYAA  223 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~~~-Kk~~~~kK~lk~~f~~ef~~~~Klf~l  223 (795)
                      +|+|+|++..      ..|+.....+..+++.   .+.| ++.|++..|... .....+.+.+.......  .+..+|.+
T Consensus        92 ii~v~D~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~i~~~~~~~~~~~--~~~~~~~~  162 (181)
T 2h17_A           92 VIVVVDSTDR------ERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTVAEISQFLKLTSIKD--HQWHIQAC  162 (181)
T ss_dssp             EEEEEETTCT------TTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHHHHHHTTGGGCCS--SCEEEEEC
T ss_pred             EEEEEECCCH------HHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCCHHHHHHHhCcccccC--CceEEEEc
Confidence            9999999853      3355544555555553   4554 667788888511 11233333332111111  24477888


Q ss_pred             CC--HHHHHHHHHHHh
Q 003796          224 DT--KDELHKFLWLFK  237 (795)
Q Consensus       224 ~~--~~E~~nL~R~Is  237 (795)
                      |.  ...+..|...|.
T Consensus       163 Sa~~g~gi~~l~~~l~  178 (181)
T 2h17_A          163 CALTGEGLCQGLEWMM  178 (181)
T ss_dssp             BTTTTBTHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHH
Confidence            74  233555555554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.95  E-value=0.5  Score=44.36  Aligned_cols=109  Identities=10%  Similarity=0.053  Sum_probs=61.7

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCcc---eEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhceEEE
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGALS---STVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLVAF  150 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g~---~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADlVll  150 (795)
                      .++-|+|+|.++.+.. +|++.|+..- .. +..+.+.   .++.......+++|+.+|-. .... .....+-||.+|+
T Consensus         8 ~~~~i~v~G~~~~GKs-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKS-ALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL   86 (181)
T ss_dssp             CEEEEEEEECTTSSHH-HHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHH-HHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence            3466999999998876 7743333321 00 1111111   12333444568889988731 2222 2344677999999


Q ss_pred             eeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++|++..      ..|+   .+-.++++.+...+.| ++.|++..|.
T Consensus        87 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  126 (181)
T 2fn4_A           87 VFAINDR------QSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADL  126 (181)
T ss_dssp             EEETTCH------HHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGG
T ss_pred             EEeCCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            9999853      2233   3333444555555666 5667888775

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.95  E-value=0.2  Score=48.19  Aligned_cols=104  Identities=13%  Similarity=0.120  Sum_probs=56.3

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC----C-cc-eEEEecCceeeEEEEeCCCC-----ChHH-HHHHHhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG----A-LS-STVSSSKYRLRTSVLQAPHG-----DLVG-CMEMAKV  144 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----~-g~-~tv~~~r~k~Ritfie~~~~-----dl~~-~LD~aKv  144 (795)
                      ..+.-|+|+|+++.+.. +|    +..|+.....    . .+ ++...  ....+.|+.+|-.     .+.. +.+...-
T Consensus        46 ~~~~~i~vvG~~g~GKS-sl----l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  118 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKT-SL----LTLLTTDSVRPTVVSQEPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF  118 (193)
T ss_dssp             CCCCEEEEECCTTSSHH-HH----HHHHHHSSCC------------CC--CCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCCCCHH-HH----HHHHhcCCCCcccccCCCceeeee--cCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence            45567899999998886 77    4444332211    1 11 12111  2357778877521     1222 2233345


Q ss_pred             hceEEEeeeCC-CccccccccccChHHHHHHHHHHh------cCCCceEEEeccCCc
Q 003796          145 ADLVAFVASAS-SFSEESMSYYIDSFGNQCLSVFRS------LGLPSTAVLIRDLPT  194 (795)
Q Consensus       145 ADlVll~idas-~g~~~~~~~~fe~eg~e~L~~l~a------qG~P~vigVl~~Ld~  194 (795)
                      ||.+|+|+|++ ..      ..|+.....+..++..      .+.| ++.|++..|.
T Consensus       119 ~~~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  168 (193)
T 2ged_A          119 VKGLIFMVDSTVDP------KKLTTTAEFLVDILSITESSCENGID-ILIACNKSEL  168 (193)
T ss_dssp             EEEEEEEEETTCCH------HHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTS
T ss_pred             CCEEEEEEECCCCc------hhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHh
Confidence            99999999998 31      2244333334444433      3555 6667888885

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.93  E-value=0.8  Score=43.54  Aligned_cols=103  Identities=11%  Similarity=0.180  Sum_probs=62.5

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cc--eEEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhc
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LS--STVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVAD  146 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~--~tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvAD  146 (795)
                      ..+.-|+|+|+++.+.. +|    +..++......     |.  .++...  ..+++++.+| ..  ...+ ....+-||
T Consensus        16 ~~~~~i~v~G~~~~GKs-sl----~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~Dt~-G~~~~~~~~~~~~~~~d   87 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKT-TI----LKKFNGEDVDTISPTLGFNIKTLEHR--GFKLNIWDVG-GQKSLRSYWRNYFESTD   87 (186)
T ss_dssp             -CCEEEEEECSTTSSHH-HH----HHHHTTCCCSSCCCCSSEEEEEEEET--TEEEEEEEEC-CSHHHHTTGGGGCTTCS
T ss_pred             CCeeEEEEECCCCCCHH-HH----HHHHhcCCCCcccccCccceEEEEEC--CEEEEEEECC-CCHhHHHHHHHHhcCCC
Confidence            45677999999998876 77    55554333211     31  122333  3688899887 43  2222 23456799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      .+|+++|++..      ..|+.....+..+++.   .+.| ++.|++..|.
T Consensus        88 ~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  131 (186)
T 1ksh_A           88 GLIWVVDSADR------QRMQDCQRELQSLLVEERLAGAT-LLIFANKQDL  131 (186)
T ss_dssp             EEEEEEETTCG------GGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred             EEEEEEECcCH------HHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccC
Confidence            99999999853      2354444444455543   3444 6677888885

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.92  E-value=0.96  Score=42.88  Aligned_cols=96  Identities=19%  Similarity=0.279  Sum_probs=57.8

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC--------cceEEEecCceeeEEEEeCCCCC-------------hHH---
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSSTVSSSKYRLRTSVLQAPHGD-------------LVG---  137 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~tv~~~r~k~Ritfie~~~~d-------------l~~---  137 (795)
                      |+|+|.++.+.. +|    +..|+......        .+.++...    .++++..| .-             +..   
T Consensus         4 i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~-G~~~~~~~~~~~~~~~~~~~~   73 (190)
T 2cxx_A            4 IIFAGRSNVGKS-TL----IYRLTGKKVRRGKRPGVTRKIIEIEWK----NHKIIDMP-GFGFMMGLPKEVQERIKDEIV   73 (190)
T ss_dssp             EEEEEBTTSSHH-HH----HHHHHSCCCSSSSSTTCTTSCEEEEET----TEEEEECC-CBSCCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHH-HH----HHHHhCcCCccCCCCCccceeEEEecC----CEEEEECC-CccccccCCHHHHHHHHHHHH
Confidence            789999998876 77    44443322111        22333322    68889887 41             112   


Q ss_pred             -HHHH-HhhhceEEEeeeCCCcccccccccc-ChH--------HHHHHHHHHhcCCCceEEEeccCCc
Q 003796          138 -CMEM-AKVADLVAFVASASSFSEESMSYYI-DSF--------GNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       138 -~LD~-aKvADlVll~idas~g~~~~~~~~f-e~e--------g~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                       .+.- +..+|+|++++|++..      ... +.|        ..+++..+...+.| ++.|++..|.
T Consensus        74 ~~~~~~~~~~~~v~~v~d~~s~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  134 (190)
T 2cxx_A           74 HFIEDNAKNIDVAVLVVDGKAA------PEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDK  134 (190)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHH------HHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred             HHHHhhhccCCEEEEEEcchhh------hhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhc
Confidence             2222 7788999999998742      000 111        23466777777888 6777888775

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.91  E-value=1.2  Score=41.95  Aligned_cols=105  Identities=11%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhc
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVAD  146 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvAD  146 (795)
                      +++-|+|+|.++.+.. +|    +..|.....      +.+   ..++.......++.|+.+|- .+...+ ....+-||
T Consensus        17 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKS-AL----TLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             CEEEEEEECSTTSSHH-HH----HHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CceEEEEECCCCCCHH-HH----HHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            4566999999998876 67    444432211      111   11233333345788999873 223333 34577899


Q ss_pred             eEEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+|+++|++..      ..|+   .+-.+++..+...+.| ++.|++..|.
T Consensus        92 ~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl  135 (187)
T 2a9k_A           92 GFLCVFSITEM------ESFAATADFREQILRVKEDENVP-FLLVGNKSDL  135 (187)
T ss_dssp             EEEEEEETTCH------HHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGG
T ss_pred             EEEEEEECcCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            99999999843      2232   2334444444444666 5667888775

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.85  E-value=0.27  Score=46.30  Aligned_cols=106  Identities=9%  Similarity=-0.012  Sum_probs=60.8

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKV  144 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKv  144 (795)
                      .+++-|+|+|.++.+.. +|    +..|.......      +    ..++.......+++|+.+|-.. ... .....+-
T Consensus         7 ~~~~~i~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKS-SL----LLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             CEEEEEEEECCTTSCHH-HH----HHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CcceEEEEECCCCCCHH-HH----HHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            34556899999998876 67    55554332111      1    2223334444678888887311 111 2334677


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT  194 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~  194 (795)
                      ||.+|+++|++.+      ..|+.. ..+|..+..+. =..++.|++..|.
T Consensus        82 ~d~~i~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl  125 (181)
T 3tw8_B           82 THGVIVVYDVTSA------ESFVNV-KRWLHEINQNCDDVCRILVGNKNDD  125 (181)
T ss_dssp             CSEEEEEEETTCH------HHHHHH-HHHHHHHHHHCTTSEEEEEEECTTC
T ss_pred             CCEEEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCEEEEEECCCC
Confidence            9999999999853      223332 33455554443 2235667888885

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.81  E-value=1.8  Score=41.20  Aligned_cols=104  Identities=15%  Similarity=0.216  Sum_probs=64.0

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cce--EEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSS--TVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL  147 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~--tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl  147 (795)
                      ..+.-|+|+|+++.+.. +|    ++.|+......     |..  ++...  ..+++++..+-. .+.++ ....+-||.
T Consensus        14 ~~~~ki~ivG~~~vGKS-sL----~~~l~~~~~~~~~~t~g~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   86 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKT-TL----LKQLASEDISHITPTQGFNIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (181)
T ss_dssp             SSCEEEEEEESTTSSHH-HH----HHHHCCSCCEEEEEETTEEEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCceEEEEECCCCCCHH-HH----HHHHhcCCCCcccCcCCeEEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            45677999999998876 77    66665443211     321  23333  357888888622 23343 445688999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      +|+++|++..      ..|+.....+..+++.   .+.| ++.|++..|.
T Consensus        87 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl  129 (181)
T 1fzq_A           87 LIYVIDSADR------KRFEETGQELTELLEEEKLSCVP-VLIFANKQDL  129 (181)
T ss_dssp             EEEEEETTCG------GGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTS
T ss_pred             EEEEEECcCH------HHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCc
Confidence            9999999853      2354433444444443   4555 6677888885

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.65  E-value=0.56  Score=45.35  Aligned_cols=104  Identities=10%  Similarity=0.131  Sum_probs=59.4

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCC-----CCCcce--EEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGALSS--TVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL  147 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~g~~--tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl  147 (795)
                      .++.-|+|+|+++.+.. +|    ++.|+...     .+.++.  ++....  .+++++..+-. ....+ ....+-||.
T Consensus        21 ~~~~ki~~vG~~~vGKS-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKT-TL----LHMLKNDRLATLQPTWHPTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNG   93 (190)
T ss_dssp             ---CEEEEEESTTSSHH-HH----HHHHHHSCCCCCCCCCSCEEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred             CCccEEEEECCCCCCHH-HH----HHHHhcCCCCccccCCCCCeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            34557899999998876 67    44443321     112332  233332  67888887621 12222 234577999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~  194 (795)
                      +|+++|++.+      ..|+.-...+..+++   ..+.| ++.|++..|.
T Consensus        94 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl  136 (190)
T 1m2o_B           94 IVFLVDAADP------ERFDEARVELDALFNIAELKDVP-FVILGNKIDA  136 (190)
T ss_dssp             EEEEEETTCG------GGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTS
T ss_pred             EEEEEECCCh------HHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCC
Confidence            9999999854      235443333434433   35665 6777888875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.61  E-value=1.3  Score=40.55  Aligned_cols=105  Identities=11%  Similarity=0.081  Sum_probs=60.4

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhc
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVAD  146 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvAD  146 (795)
                      +++-|+|+|.++.+.. +|    +..+.....      +.+.   .++.......++.++.+|-. ....+ -...+-||
T Consensus         3 ~~~~i~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   77 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKS-AL----TLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   77 (168)
T ss_dssp             CEEEEEEECSTTSSHH-HH----HHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCS
T ss_pred             ceEEEEEECCCCCCHH-HH----HHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCC
Confidence            4566999999998875 67    444432221      1111   22333433457889998731 22333 34567899


Q ss_pred             eEEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+|+++|++..      ..|+   .+-.+++......+.| ++.|++..|.
T Consensus        78 ~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl  121 (168)
T 1u8z_A           78 GFLCVFSITEM------ESFAATADFREQILRVKEDENVP-FLLVGNKSDL  121 (168)
T ss_dssp             EEEEEEETTCH------HHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGG
T ss_pred             EEEEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccc
Confidence            99999999853      2232   2233444444334666 5667888775

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=92.55  E-value=4.3  Score=43.66  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--------cceEEEecCceeeEEEEeCCCCCh------------
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSSTVSSSKYRLRTSVLQAPHGDL------------  135 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~tv~~~r~k~Ritfie~~~~dl------------  135 (795)
                      ...+..|+|+|+++.+.. +|    +..++......        ++...........+.++.+| .-+            
T Consensus       164 ~~~~~~v~lvG~~gvGKS-TL----in~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~  237 (357)
T 2e87_A          164 DLEIPTVVIAGHPNVGKS-TL----LKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTP-GLLDRPISERNEIEK  237 (357)
T ss_dssp             CSSSCEEEEECSTTSSHH-HH----HHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECT-TTSSSCSTTSCHHHH
T ss_pred             CCCCCEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCC-CccccchhhhhHHHH
Confidence            356678999999998876 77    55554433111        11111111112468888876 321            


Q ss_pred             HHHHHHHhhhceEEEeeeCCCccccccccccChH-HHHHHHHHHh--cCCCceEEEeccCCc
Q 003796          136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSF-GNQCLSVFRS--LGLPSTAVLIRDLPT  194 (795)
Q Consensus       136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~e-g~e~L~~l~a--qG~P~vigVl~~Ld~  194 (795)
                      ..+...+..||.+|+|+|++.+      .+++.+ ..+++..+..  .|.| ++.|++..|.
T Consensus       238 ~~~~~~~~~ad~illV~D~s~~------~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl  292 (357)
T 2e87_A          238 QAILALRYLGNLIIYIFDPSEH------CGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDV  292 (357)
T ss_dssp             HHHHGGGGTCSEEEEEECTTCT------TSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTT
T ss_pred             HHHHHHHhcCCEEEEEEeCCcc------ccCCHHHHHHHHHHHHHhcCCCC-EEEEEECccc
Confidence            2344455679999999998753      233322 2455555544  2555 6677887775

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.52  E-value=0.77  Score=44.29  Aligned_cols=105  Identities=6%  Similarity=0.016  Sum_probs=61.1

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCCCC-hHHHHHHHhhhce
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPHGD-LVGCMEMAKVADL  147 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~~d-l~~~LD~aKvADl  147 (795)
                      +++-|+|+|.++.+.. +|    +..|+....      +.+.   .++........+.|+.++-.. ..-.....+-||.
T Consensus        27 ~~~ki~v~G~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~d~  101 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKS-AL----VVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEG  101 (196)
T ss_dssp             CCEEEEEECCTTSSHH-HH----HHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHHHHHHHHHCSE
T ss_pred             CceEEEEECCCCCCHH-HH----HHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCcccchhhhhccCCE
Confidence            4566999999998876 77    444433221      1121   123334445678889887322 2334556788999


Q ss_pred             EEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +|+++|++..      ..|+   .+-.+++......+.| ++.|++..|.
T Consensus       102 iilv~D~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl  144 (196)
T 2atv_A          102 FVLVYDITDR------GSFEEVLPLKNILDEIKKPKNVT-LILVGNKADL  144 (196)
T ss_dssp             EEEEEETTCH------HHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGG
T ss_pred             EEEEEECcCH------HHHHHHHHHHHHHHHhhCCCCCc-EEEEEECccc
Confidence            9999999842      2232   2233333333334665 5666777775

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=92.35  E-value=0.85  Score=47.22  Aligned_cols=82  Identities=13%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEe
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAA  223 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l  223 (795)
                      +|.+|++++++.       .++.....+++..|.. +.| ++.|++..|. ........++.++..+..   .+..+|.+
T Consensus       116 ~~~~l~~i~~~~-------~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~~~~~e~~~~~~~i~~~l~~---~~i~v~~~  183 (274)
T 3t5d_A          116 VQCCLYFIAPSG-------HGLKPLDIEFMKRLHE-KVN-IIPLIAKADTLTPEECQQFKKQIMKEIQE---HKIKIYEF  183 (274)
T ss_dssp             CCEEEEEECSCC-------SSCCHHHHHHHHHHTT-TSC-EEEEESSGGGSCHHHHHHHHHHHHHHHHH---TTCCCCCC
T ss_pred             eeEEEEEecCCC-------CCCCHHHHHHHHHHhc-cCC-EEEEEeccCCCCHHHHHHHHHHHHHHHHH---cCCeEEcC
Confidence            668888886653       2377777889999887 766 6778888885 112223344444444432   24556666


Q ss_pred             C--CHHHHHHHHHHHhh
Q 003796          224 D--TKDELHKFLWLFKE  238 (795)
Q Consensus       224 ~--~~~E~~nL~R~Is~  238 (795)
                      +  ...++..|...|..
T Consensus       184 sa~~~~~~~~l~~~l~~  200 (274)
T 3t5d_A          184 PETDDEEENKLVKKIKD  200 (274)
T ss_dssp             -----------CHHHHH
T ss_pred             CCCCChhHHHHHHHHhc
Confidence            5  23445556666654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.26  E-value=0.77  Score=44.52  Aligned_cols=104  Identities=13%  Similarity=0.043  Sum_probs=61.1

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvA  145 (795)
                      .++-|+|+|.++.+.. +|    +..|.....      +.|    ..++........++|+.+|- ..+.. .....+-|
T Consensus        27 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  101 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKS-SF----LMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA  101 (199)
T ss_dssp             -CEEEEEESSTTSSHH-HH----HHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHH-HH----HHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence            4567999999998876 67    444432221      112    23344444456799999873 22333 34557789


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      |.+|||+|++.+      ..|+.. ..++..++..   +.| ++.|++..|.
T Consensus       102 d~iilv~d~~~~------~s~~~~-~~~~~~i~~~~~~~~p-iilv~NK~Dl  145 (199)
T 2p5s_A          102 DGVLLLYDVTCE------KSFLNI-REWVDMIEDAAHETVP-IMLVGNKADI  145 (199)
T ss_dssp             SEEEEEEETTCH------HHHHTH-HHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred             CEEEEEEECCCh------HHHHHH-HHHHHHHHHhcCCCCC-EEEEEECccc
Confidence            999999999853      223322 2344444443   555 6677888775

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=92.23  E-value=0.78  Score=44.72  Aligned_cols=104  Identities=10%  Similarity=0.116  Sum_probs=60.4

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCc--ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhce
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GAL--SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADL  147 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g--~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADl  147 (795)
                      ..+.-|+|+|+++.+.. +|    ++.|+....     +.|  ..++....  .++.++..|-. ....+. ...+-||.
T Consensus        23 ~~~~ki~lvG~~~vGKS-sL----i~~l~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~   95 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKT-TL----LHMLKDDRLGQHVPTLHPTSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAING   95 (198)
T ss_dssp             TCCEEEEEEEETTSSHH-HH----HHHHSCC------CCCCCSCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred             CCCcEEEEECCCCCCHH-HH----HHHHhcCCCCccCCCCCceeEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence            34566899999998876 67    555543211     112  22333332  57778876521 122222 34678999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~  194 (795)
                      +|+++|++..      ..|+.-...+..+++   ..+.| ++.|++..|.
T Consensus        96 ~i~v~D~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl  138 (198)
T 1f6b_A           96 IVFLVDCADH------ERLLESKEELDSLMTDETIANVP-ILILGNKIDR  138 (198)
T ss_dssp             EEEEEETTCG------GGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTS
T ss_pred             EEEEEECCCH------HHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCc
Confidence            9999999853      235544444444443   35666 5667888885

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.22  E-value=0.7  Score=42.94  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=55.3

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC------C----cceEEEecCceeeEEEEeCCCC-ChHH-HHH-HHhhhce
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG------A----LSSTVSSSKYRLRTSVLQAPHG-DLVG-CME-MAKVADL  147 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~----g~~tv~~~r~k~Ritfie~~~~-dl~~-~LD-~aKvADl  147 (795)
                      =|+|+|.++.+.. +|    +..|+.....      .    ...++......-.+.++..+.. +..+ +.. ..+-||.
T Consensus         4 ki~ivG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~   78 (169)
T 3q85_A            4 KVMLVGESGVGKS-TL----AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA   78 (169)
T ss_dssp             EEEEECSTTSSHH-HH----HHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred             EEEEECCCCCCHH-HH----HHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence            4899999998886 77    4444321111      1    2223334444567778877522 2222 222 2567999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      +|+++|++..      ..|+.-...+..+++..   +.| ++.|++..|.
T Consensus        79 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  121 (169)
T 3q85_A           79 FLIVFSVTDR------RSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDL  121 (169)
T ss_dssp             EEEEEETTCH------HHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTC
T ss_pred             EEEEEECCCh------HHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcch
Confidence            9999999853      23444333333333332   555 5566788875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.20  E-value=0.49  Score=43.91  Aligned_cols=103  Identities=10%  Similarity=-0.009  Sum_probs=59.7

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCCC-hH-HHHHHHhhhc
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHGD-LV-GCMEMAKVAD  146 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g----~~tv~~~r~k~Ritfie~~~~d-l~-~~LD~aKvAD  146 (795)
                      ++=|+|+|+++.+.. +|    +..|.......      |    ..++..+....+++++.+|-.. .. ......+-||
T Consensus         3 ~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   77 (170)
T 1g16_A            3 IMKILLIGDSGVGKS-CL----LVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAM   77 (170)
T ss_dssp             EEEEEEEESTTSSHH-HH----HHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEE
T ss_pred             ceEEEEECcCCCCHH-HH----HHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCC
Confidence            455899999998876 67    44443222111      1    2233344445678888887211 11 1345567899


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      .+|+++|++..      ..|+. ...++..+..+   +.| ++.|++..|.
T Consensus        78 ~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p-iilv~nK~Dl  120 (170)
T 1g16_A           78 GIILVYDITDE------RTFTN-IKQWFKTVNEHANDEAQ-LLLVGNKSDM  120 (170)
T ss_dssp             EEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred             EEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCc-EEEEEECccC
Confidence            99999999853      22322 23455555544   443 5667888775

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.19  E-value=0.92  Score=43.50  Aligned_cols=108  Identities=7%  Similarity=0.005  Sum_probs=61.9

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc---ceEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhceEEEe
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADLVAFV  151 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADlVll~  151 (795)
                      .+-|+|+|.++.+.. +|++.|+..- .. +..+.+   ..++.....+.+++++.++- .+...+ ....+-||.+|||
T Consensus        18 ~~ki~v~G~~~~GKs-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   96 (194)
T 2atx_A           18 MLKCVVVGDGAVGKT-CLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC   96 (194)
T ss_dssp             EEEEEEEECTTSSHH-HHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHH-HHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence            356899999998876 7743333221 00 111111   12344444456788888763 122222 2345679999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      +|++..      ..|+.....++..+..+  +.| ++.|++..|.
T Consensus        97 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  134 (194)
T 2atx_A           97 FSVVNP------ASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDL  134 (194)
T ss_dssp             EETTCH------HHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred             EECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence            999853      23443333566666665  665 5667888775

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.17  E-value=2  Score=39.45  Aligned_cols=106  Identities=11%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhc-c-CCCCCc----ceEEEecCceeeEEEEeCCCCC--hHH-HHHHHhhhceEE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLS-S-EGTGAL----SSTVSSSKYRLRTSVLQAPHGD--LVG-CMEMAKVADLVA  149 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~-~-~~~~~g----~~tv~~~r~k~Ritfie~~~~d--l~~-~LD~aKvADlVl  149 (795)
                      +.-|+|+|.++.+.. +|++.|+.... . +..+.|    ..++..+....+++++.+| ..  ... .....+-||.+|
T Consensus         5 ~~~i~v~G~~~~GKs-sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKS-SMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA-GQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             EEEEEEECSTTSSHH-HHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCT-TGGGTTCCCHHHHTTCCEEE
T ss_pred             eEEEEEECcCCCCHH-HHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCC-CcHhHHHHHHHHhcCCCEEE
Confidence            456899999998876 77443333211 1 011111    2233334445688888887 32  111 334567899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      +++|++..      ..|+. ...++..+..+  +.| ++.|++..|.
T Consensus        83 ~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~p-iilv~nK~Dl  121 (168)
T 1z2a_A           83 LVFSTTDR------ESFEA-ISSWREKVVAEVGDIP-TALVQNKIDL  121 (168)
T ss_dssp             EEEETTCH------HHHHT-HHHHHHHHHHHHCSCC-EEEEEECGGG
T ss_pred             EEEECcCH------HHHHH-HHHHHHHHHHhCCCCC-EEEEEECccc
Confidence            99999853      22332 22344444333  555 6677888885

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.13  E-value=0.77  Score=43.67  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=58.1

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCC------C--CC--cceEEEecCceeeEEEEeCCCC-ChH------HH
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------T--GA--LSSTVSSSKYRLRTSVLQAPHG-DLV------GC  138 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~--~~--g~~tv~~~r~k~Ritfie~~~~-dl~------~~  138 (795)
                      ...+..|+|+|+++.++. +|    ++.|+...      .  +.  ...++...  ..++.++..|-. .+.      .+
T Consensus         4 ~~~~~~i~lvG~~gvGKS-tL----~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~   76 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKS-TI----FNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII   76 (188)
T ss_dssp             CCCEEEEEEECSTTSSHH-HH----HHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHH
T ss_pred             CCCCCEEEEECCCCCCHH-HH----HHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHH
Confidence            345678999999998876 77    44443321      1  10  11122222  357888887621 111      22


Q ss_pred             HH-HH--hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          139 ME-MA--KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       139 LD-~a--KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .. ..  .-||+|++++|++.         ++. ...++..+...+.| ++.|++.+|.
T Consensus        77 ~~~~~~~~~~~~~i~v~d~~~---------~~~-~~~~~~~~~~~~~p-iilv~nK~Dl  124 (188)
T 2wjg_A           77 ARDYIINEKPDLVVNIVDATA---------LER-NLYLTLQLMEMGAN-LLLALNKMDL  124 (188)
T ss_dssp             HHHHHHHHCCSEEEEEEEGGG---------HHH-HHHHHHHHHTTTCC-EEEEEECHHH
T ss_pred             HHHHHhccCCCEEEEEecchh---------HHH-HHHHHHHHHhcCCC-EEEEEEhhhc
Confidence            22 12  34899999999873         332 34556666678887 4556777664

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.13  E-value=0.82  Score=43.15  Aligned_cols=108  Identities=10%  Similarity=0.083  Sum_probs=58.4

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHh-hc-cCCCCCc---ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEEEe
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQ-LS-SEGTGAL---SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVAFV  151 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~-~~-~~~~~~g---~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVll~  151 (795)
                      ++-|+|+|.++.+.. +|++.|+.. +. .+..+.+   ...+......-+++++.+|-.+ ... .....+-||.+|++
T Consensus         6 ~~ki~~~G~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v   84 (181)
T 3t5g_A            6 SRKIAILGYRSVGKS-SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV   84 (181)
T ss_dssp             EEEEEEEESTTSSHH-HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred             eEEEEEECcCCCCHH-HHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence            456899999998885 673333311 11 1111112   1222334444678889887322 221 22345679999999


Q ss_pred             eeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          152 ASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       152 idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +|++..      ..|+   .+-.++++.+...+.| ++.|++..|.
T Consensus        85 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  123 (181)
T 3t5g_A           85 YSVTSI------KSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDL  123 (181)
T ss_dssp             EETTCH------HHHHHHHHHHHHHHHHC----CC-EEEEEECTTC
T ss_pred             EECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            999842      2233   3444555555555776 5667787774

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=92.11  E-value=0.66  Score=44.24  Aligned_cols=104  Identities=11%  Similarity=0.062  Sum_probs=60.5

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hH-HHHHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LV-GCMEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~-~~LD~aKvA  145 (795)
                      +++-|+|+|.++.+.. +|    +..|+....      +.|    ..++.......++.|+.+|-.. +. -.....+-|
T Consensus        14 ~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (195)
T 1x3s_A           14 TTLKILIIGESGVGKS-SL----LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA   88 (195)
T ss_dssp             EEEEEEEECSTTSSHH-HH----HHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred             CceEEEEECCCCCCHH-HH----HHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            3567999999998876 67    444433221      112    2233344445678888887311 11 244567889


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~  194 (795)
                      |.+|||+|++..      ..|+. ....|..+..+    +. .++.|++..|.
T Consensus        89 d~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~~-p~ilv~nK~Dl  133 (195)
T 1x3s_A           89 QGVILVYDVTRR------DTFVK-LDNWLNELETYCTRNDI-VNMLVGNKIDK  133 (195)
T ss_dssp             CEEEEEEETTCH------HHHHT-HHHHHHHHTTCCSCSCC-EEEEEEECTTS
T ss_pred             CEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCcCCC-cEEEEEECCcC
Confidence            999999999853      22322 22344555443    33 34567888775

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.09  E-value=1.5  Score=42.92  Aligned_cols=109  Identities=10%  Similarity=0.035  Sum_probs=59.1

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-CCcceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhh----hceEE
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-GALSSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKV----ADLVA  149 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~~g~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKv----ADlVl  149 (795)
                      ..+.-|+|+|+++++.. +|++.|......... ...|.+ ...-...++.++..|-. .+.. +...++-    ||.+|
T Consensus        10 ~~~~~i~~~G~~g~GKT-sl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i   87 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKT-SLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI   87 (218)
T ss_dssp             CCCCEEEEECSTTSSHH-HHHHHHHHSSCCCBCCCSSCEE-ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             CCCCEEEEECCCCCCHH-HHHHHHhcCCCCCeeeecCceE-EEEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence            34556889999998886 673333322111111 112222 21113468888987632 2222 2333343    89999


Q ss_pred             EeeeCC-CccccccccccChHHHHHHHHHHh------cCCCceEEEeccCCc
Q 003796          150 FVASAS-SFSEESMSYYIDSFGNQCLSVFRS------LGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas-~g~~~~~~~~fe~eg~e~L~~l~a------qG~P~vigVl~~Ld~  194 (795)
                      +++|++ ..      ..|+.....+..++..      .+.| ++.|++..|.
T Consensus        88 ~v~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  132 (218)
T 1nrj_B           88 FMVDSTVDP------KKLTTTAEFLVDILSITESSCENGID-ILIACNKSEL  132 (218)
T ss_dssp             EEEETTSCT------TCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTS
T ss_pred             EEEECCCCh------HHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHh
Confidence            999998 21      2354444444444433      4555 6677888875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=92.08  E-value=0.47  Score=46.48  Aligned_cols=106  Identities=12%  Similarity=0.026  Sum_probs=62.0

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVA  145 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvA  145 (795)
                      ..++-|+|+|.++.+.. +|    +..|+....      +.+   ..++......-.+.|+..|-. .+..+. ...+-|
T Consensus        28 ~~~~ki~vvG~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKT-CL----LISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT  102 (204)
T ss_dssp             --CEEEEEEESTTSSHH-HH----HHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCeEEEEEECcCCCCHH-HH----HHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence            45778999999998875 67    444432211      111   122333434456668887621 222222 255789


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      |.+|+|+|++..      ..|+.....++..++.+  +.| ++.|++..|.
T Consensus       103 d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  146 (204)
T 4gzl_A          103 DVFLICFSLVSP------ASFENVRAKWYPEVRHHCPNTP-IILVGTKLDL  146 (204)
T ss_dssp             SEEEEEEETTCH------HHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHH
T ss_pred             CEEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEechhh
Confidence            999999999853      33544444677777776  555 4556777664

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=92.05  E-value=0.39  Score=53.88  Aligned_cols=100  Identities=12%  Similarity=0.195  Sum_probs=64.7

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCC---C--c----ceEEEecCceeeEEEEeCCCC-C------hHH----HH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A--L----SSTVSSSKYRLRTSVLQAPHG-D------LVG----CM  139 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~--g----~~tv~~~r~k~Ritfie~~~~-d------l~~----~L  139 (795)
                      ..|+|+|.++.+.. +|    +..|++....   .  |    .....+.-...+++++..+ . +      ...    ..
T Consensus        24 ~~V~lvG~~nvGKS-TL----~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~-G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           24 PVVAIVGRPNVGKS-TI----FNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTG-GIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             CEEEEECSSSSSHH-HH----HHHHEEEEEC-----------CEEEECTTCSSCCEEECCC-C------CCHHHHHHHHH
T ss_pred             CEEEEECCCCCcHH-HH----HHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECC-CCCCcchHHHHHHHHHHH
Confidence            36899999998886 77    5555443211   1  2    1222222224678888877 4 1      111    23


Q ss_pred             HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      -+..-||+||||+|+..|        +.....+++..|+..|.| ++.|++.+|.
T Consensus        98 ~~~~~ad~il~VvD~~~~--------~~~~d~~l~~~l~~~~~p-vilV~NK~D~  143 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVNKLDN  143 (456)
T ss_dssp             HHHHHCSEEEEEEESSSC--------SCHHHHHHHHHHTTCCSC-EEEEEECC--
T ss_pred             hhHhhCCEEEEEEeCCCC--------CChHHHHHHHHHHHcCCC-EEEEEECccc
Confidence            345679999999999854        777788999999998988 5556788875

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.02  E-value=0.9  Score=42.44  Aligned_cols=144  Identities=8%  Similarity=0.049  Sum_probs=74.8

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHh-hccCCC-CCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQ-LSSEGT-GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAF  150 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~-~~~~~~-~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll  150 (795)
                      ++-|+|+|.++.+.. +|++.|+.. +..... +.+    ..++.......+++++.+|-. ....+ ...++-||.+|+
T Consensus        14 ~~~i~v~G~~~~GKs-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKT-SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEESTTSSHH-HHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             ceEEEEECCCCCCHH-HHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            456999999998876 673333321 111111 112    122333433458889988731 23333 345678999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeC
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAAD  224 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~l~  224 (795)
                      ++|++..      ..|+.. ...|..+..+   +.| ++.|++..|....+   ....++..+..       +..+|.+|
T Consensus        93 v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~S  157 (179)
T 2y8e_A           93 VYDITNT------NSFHQT-SKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVSTEEGERKAKEL-------NVMFIETS  157 (179)
T ss_dssp             EEETTCH------HHHHTH-HHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSCHHHHHHHHHHH-------TCEEEEEB
T ss_pred             EEECCCH------HHHHHH-HHHHHHHHHhcCCCCc-EEEEEECCcccccCcCCHHHHHHHHHHc-------CCeEEEEe
Confidence            9999853      223322 2333333332   444 56678887751111   12233333221       45778887


Q ss_pred             CH--HHHHHHHHHHhh
Q 003796          225 TK--DELHKFLWLFKE  238 (795)
Q Consensus       225 ~~--~E~~nL~R~Is~  238 (795)
                      ..  ..+..|...|..
T Consensus       158 a~~~~~i~~l~~~l~~  173 (179)
T 2y8e_A          158 AKAGYNVKQLFRRVAA  173 (179)
T ss_dssp             TTTTBSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            42  335556555543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=92.00  E-value=0.92  Score=50.47  Aligned_cols=130  Identities=9%  Similarity=0.086  Sum_probs=77.2

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c------ceEEEecCceeeEEEEeCCCC-----------C
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L------SSTVSSSKYRLRTSVLQAPHG-----------D  134 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g------~~tv~~~r~k~Ritfie~~~~-----------d  134 (795)
                      ..+.-|+|+|.++.+.. +|    +..|+....   ..  |      ...+...  .++++++..| .           .
T Consensus       173 ~~~~ki~lvG~~nvGKS-SL----in~l~~~~~~~~~~~~gtT~d~~~~~~~~~--~~~~~l~DT~-G~~~~~~~~~~~e  244 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKS-SL----VNAMLGEERVIVSNVAGTTRDAVDTSFTYN--QQEFVIVDTA-GMRKKGKVYETTE  244 (436)
T ss_dssp             TTCEEEEEECSTTSSHH-HH----HHHHHTSTTEEEC---------CCEEEEET--TEEEEETTHH-HHTCBTTBCCCCS
T ss_pred             ccCcEEEEEcCCCCCHH-HH----HHHHhCCCceeecCCCCceeeeeEEEEEEC--CeEEEEEECC-CcCcCccccchHH
Confidence            34677999999998875 77    444433221   11  1      1122222  2456666554 2           2


Q ss_pred             hHH---HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh---hHHHHHHHHh
Q 003796          135 LVG---CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK---RKDLKKMCIS  208 (795)
Q Consensus       135 l~~---~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk---~~~~kK~lk~  208 (795)
                      -.+   .+.+.+-||.+|||+|++.|        +..+..+++..+...|.| ++.|++..|...+.   ....++.+..
T Consensus       245 ~~~~~~~~~~~~~ad~~llv~D~~~~--------~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~  315 (436)
T 2hjg_A          245 KYSVLRALKAIDRSEVVAVVLDGEEG--------IIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRD  315 (436)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEEcCCcC--------CcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHH
Confidence            222   34577889999999999965        555666788888888876 55567766641011   2345555555


Q ss_pred             hcccccCCCCeeEEeCC
Q 003796          209 SLTSEFPEDCKFYAADT  225 (795)
Q Consensus       209 ~f~~ef~~~~Klf~l~~  225 (795)
                      .+...  .++.++.+|.
T Consensus       316 ~l~~~--~~~~~~~~SA  330 (436)
T 2hjg_A          316 HFQFL--DYAPILFMSA  330 (436)
T ss_dssp             HCGGG--TTSCEEECCT
T ss_pred             hcccC--CCCCEEEEec
Confidence            55432  2578888884

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=91.97  E-value=2.2  Score=46.51  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=59.1

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--------cc--eEEEecCceeeEEEEeCCC--CC--------hH
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LS--STVSSSKYRLRTSVLQAPH--GD--------LV  136 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~--~tv~~~r~k~Ritfie~~~--~d--------l~  136 (795)
                      +.| +|+|+|+++.+++ +|    ++.+++.....        .+  -++..+.  ..+.++..+-  .+        +.
T Consensus       178 ~~~-~V~lvG~~naGKS-TL----ln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~  249 (364)
T 2qtf_A          178 NIP-SIGIVGYTNSGKT-SL----FNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFF  249 (364)
T ss_dssp             -CC-EEEEECBTTSSHH-HH----HHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHH
T ss_pred             CCc-EEEEECCCCCCHH-HH----HHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHH
Confidence            344 6899999998876 77    55554433210        12  1233333  4677776651  11        35


Q ss_pred             HHHHHHhhhceEEEeeeCCCccccccccccChHH---HHHHHHHHhcCCCceEEEeccCCc
Q 003796          137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFG---NQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg---~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++++.++.||+||+++|++...     ...+..-   .++|..+...+.| ++.|++..|.
T Consensus       250 ~tl~~~~~aD~il~VvD~s~~~-----~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl  304 (364)
T 2qtf_A          250 VTLSEAKYSDALILVIDSTFSE-----NLLIETLQSSFEILREIGVSGKP-ILVTLNKIDK  304 (364)
T ss_dssp             HHHHGGGGSSEEEEEEETTSCH-----HHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGG
T ss_pred             HHHHHHHhCCEEEEEEECCCCc-----chHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCC
Confidence            6778889999999999998530     0012222   3444444444555 6667777664

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=91.91  E-value=0.5  Score=52.65  Aligned_cols=99  Identities=10%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC--C---cc----eEEEecCceeeEEEEeCCCCC----------hHH-HHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG--A---LS----STVSSSKYRLRTSVLQAPHGD----------LVG-CME  140 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~---g~----~tv~~~r~k~Ritfie~~~~d----------l~~-~LD  140 (795)
                      .|+|||.++.++. +|    +..|++....  .   |.    ......-...+++++..+ .-          +.. ...
T Consensus         5 ~V~ivG~~nvGKS-tL----~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~-G~~~~~~~~~~~~~~~~~~   78 (436)
T 2hjg_A            5 VVAIVGRPNVGKS-TI----FNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTG-GIDIGDEPFLAQIRQQAEI   78 (436)
T ss_dssp             EEEEECSTTSSHH-HH----HHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECC-CCCCcchhHHHHHHHHHHH
Confidence            5899999998876 77    5666543221  1   21    111222123578888776 32          122 244


Q ss_pred             HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +.+-||+||||+|++.|        +.....++...|+..+.| ++.|++..|.
T Consensus        79 ~~~~ad~il~vvD~~~~--------~~~~d~~~~~~l~~~~~p-vilv~NK~D~  123 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVNKLDN  123 (436)
T ss_dssp             HHHHCSEEEEEEETTTC--------SCHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred             HHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence            66789999999999865        555567788888888887 5667888886

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.85  E-value=0.45  Score=45.00  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCC-----CCCcc--eEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhce
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGALS--STVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADL  147 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~g~--~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADl  147 (795)
                      ..++-|+|+|+++.+.. +|    +..++...     .+.|.  .++...  ..+++++..|-. .... .....+-||.
T Consensus        16 ~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (183)
T 1moz_A           16 NKELRILILGLDGAGKT-TI----LYRLQIGEVVTTKPTIGFNVETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAA   88 (183)
T ss_dssp             SSCEEEEEEEETTSSHH-HH----HHHTCCSEEEEECSSTTCCEEEEEET--TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCccEEEEECCCCCCHH-HH----HHHHhcCCcCccCCcCccceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            45778999999998876 67    55554321     11122  223333  367888887621 1222 2345678999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      +|+++|++..      ..|+.....+..+++.   .+.| ++.|++..|.
T Consensus        89 ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  131 (183)
T 1moz_A           89 VIFVVDSTDK------DRMSTASKELHLMLQEEELQDAA-LLVFANKQDQ  131 (183)
T ss_dssp             EEEEEETTCT------TTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTS
T ss_pred             EEEEEECCCH------HHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCC
Confidence            9999999853      2355444445555543   4554 6777888885

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.85  E-value=0.62  Score=44.63  Aligned_cols=105  Identities=9%  Similarity=-0.020  Sum_probs=62.6

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChH-HHHHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLV-GCMEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~-~~LD~aKvA  145 (795)
                      ..+-|+|+|.++.+.. +|    +..|+....      +.|    ..++.......+++++.++-. .+. ......+-|
T Consensus        21 ~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   95 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKT-SF----LFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA   95 (189)
T ss_dssp             EEEEEEEECSTTSSHH-HH----HHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred             ceeEEEEECCCCCCHH-HH----HHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence            3456999999998876 77    444433221      112    223333434568889988631 111 123456789


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      |.+|+++|++..      ..|+. ..+++..+..+..  ..++.|++..|.
T Consensus        96 d~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl  139 (189)
T 2gf9_A           96 MGFLLMYDIANQ------ESFAA-VQDWATQIKTYSWDNAQVILVGNKCDL  139 (189)
T ss_dssp             SEEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             CEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCCEEEEEECccc
Confidence            999999999853      22332 3356666666532  346777888885

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=91.81  E-value=0.5  Score=54.55  Aligned_cols=64  Identities=14%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             eeEEEEeCCC-CC-----------hHH-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEe
Q 003796          123 LRTSVLQAPH-GD-----------LVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI  189 (795)
Q Consensus       123 ~Ritfie~~~-~d-----------l~~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl  189 (795)
                      ..++|+..|- .+           +.. +...++-||.||+|+|++.       .++..+..++|..|+.++.| ++.|+
T Consensus       154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~-------~~~~~~~~~~l~~l~~~~~p-vilVl  225 (550)
T 2qpt_A          154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK-------LEISDEFSEAIGALRGHEDK-IRVVL  225 (550)
T ss_dssp             HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS-------CCCCHHHHHHHHHTTTCGGG-EEEEE
T ss_pred             CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc-------CCCCHHHHHHHHHHHhcCCC-EEEEE
Confidence            3688898873 11           222 3346778999999999974       12455667888988888876 78889


Q ss_pred             ccCCc
Q 003796          190 RDLPT  194 (795)
Q Consensus       190 ~~Ld~  194 (795)
                      +..|.
T Consensus       226 NK~Dl  230 (550)
T 2qpt_A          226 NKADM  230 (550)
T ss_dssp             ECGGG
T ss_pred             ECCCc
Confidence            98885

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.79  E-value=0.74  Score=42.97  Aligned_cols=104  Identities=12%  Similarity=-0.006  Sum_probs=57.3

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCc----ceEEEecCceeeEEEEeCCCCCh---HHHHH-HHhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GAL----SSTVSSSKYRLRTSVLQAPHGDL---VGCME-MAKV  144 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g----~~tv~~~r~k~Ritfie~~~~dl---~~~LD-~aKv  144 (795)
                      ++.-|+|+|.++.+.. +|    +..|+....     ..|    ..++.......++.++..+-..-   ..+.. ..+.
T Consensus         3 ~~~ki~i~G~~~vGKS-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   77 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKT-SL----ASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQG   77 (175)
T ss_dssp             CEEEEEEECCTTSSHH-HH----HHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTS
T ss_pred             eEEEEEEECCCCccHH-HH----HHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhccc
Confidence            3566999999998876 77    444433221     112    23344444445788888763221   22222 2356


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT  194 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~  194 (795)
                      ||.+|+++|.+..      ..|+.-. +++..|..    .+.| ++.|++..|.
T Consensus        78 ~~~~i~v~d~~~~------~s~~~~~-~~~~~l~~~~~~~~~p-iilv~NK~Dl  123 (175)
T 2nzj_A           78 GSAYVIVYSIADR------GSFESAS-ELRIQLRRTHQADHVP-IILVGNKADL  123 (175)
T ss_dssp             CSEEEEEEETTCH------HHHHHHH-HHHHHHHHCC----CC-EEEEEECTTC
T ss_pred             CCEEEEEEECCCH------HHHHHHH-HHHHHHHHhhccCCCC-EEEEEEChhh
Confidence            8999999999842      2243222 33443433    3666 6677888875

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.75  E-value=0.92  Score=43.34  Aligned_cols=104  Identities=9%  Similarity=0.024  Sum_probs=60.9

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvA  145 (795)
                      .++-|+|+|.++.+.. +|    +..|.....      +.+    ..++.......+++|+.+|-.. ... .....+-|
T Consensus        15 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKS-CL----LLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             EEEEEEEECSTTSSHH-HH----HHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             cceEEEEECcCCCCHH-HH----HHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            3566999999998876 67    444433221      111    2333344444678888887311 222 34567889


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      |.+|+|+|++..      ..|+.. ...+..+..+   +.| ++.|++..|.
T Consensus        90 d~~i~v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~p-~ilv~nK~Dl  133 (196)
T 3tkl_A           90 HGIIVVYDVTDQ------ESFNNV-KQWLQEIDRYASENVN-KLLVGNKCDL  133 (196)
T ss_dssp             SEEEEEEETTCH------HHHHTH-HHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred             CEEEEEEECcCH------HHHHHH-HHHHHHHHHhcCCCCC-EEEEEECccc
Confidence            999999999853      223322 3355555544   444 4556788775

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=91.70  E-value=0.6  Score=48.57  Aligned_cols=138  Identities=17%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCCC----c----ce--EEEecCceeeEEEEeCCC-CChHH---------H
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----L----SS--TVSSSKYRLRTSVLQAPH-GDLVG---------C  138 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g----~~--tv~~~r~k~Ritfie~~~-~dl~~---------~  138 (795)
                      +..|+|+|.++.+.. +|    +..|++.....    |    +.  ++...  ..++.++..|- .++.+         .
T Consensus         3 ~~~I~lvG~~n~GKS-TL----in~l~g~~~~v~~~~g~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~e~   75 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKT-TL----FNQLTGSRQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQ   75 (274)
T ss_dssp             CEEEEEEECTTSSHH-HH----HHHHHTTCEEEEECTTSSSEEEEEEEECS--SCEEEEEECCCCSCSCC----CCHHHH
T ss_pred             ccEEEEECCCCCCHH-HH----HHHHhCCCcccCCCCCeeEEEEEEEEEeC--CCceEEEECcCCCccccccccCCHHHH
Confidence            467999999998886 77    55554433110    1    11  12222  35788888863 12221         1


Q ss_pred             ----HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccc
Q 003796          139 ----MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSE  213 (795)
Q Consensus       139 ----LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk-~~~~kK~lk~~f~~e  213 (795)
                          .-...-||+||+++|++.         ++ ....++..+...|+| ++.|++..|...++ .....+.+.+.+   
T Consensus        76 i~~~~~~~~~~d~ii~VvD~~~---------~~-~~~~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~l~~~l---  141 (274)
T 3i8s_A           76 IACHYILSGDADLLINVVDASN---------LE-RNLYLTLQLLELGIP-CIVALNMLDIAEKQNIRIEIDALSARL---  141 (274)
T ss_dssp             HHHHHHHHTCCSEEEEEEEGGG---------HH-HHHHHHHHHHHHTCC-EEEEEECHHHHHHTTEEECHHHHHHHH---
T ss_pred             HHHHHHhhcCCCEEEEEecCCC---------hH-HHHHHHHHHHhcCCC-EEEEEECccchhhhhHHHHHHHHHHhc---
Confidence                112357999999999984         22 234556666777988 56677777741011 000112232222   


Q ss_pred             cCCCCeeEEeCC--HHHHHHHHHHHhhcc
Q 003796          214 FPEDCKFYAADT--KDELHKFLWLFKEQR  240 (795)
Q Consensus       214 f~~~~Klf~l~~--~~E~~nL~R~Is~~k  240 (795)
                         +..++.+|.  ...+..|...|...-
T Consensus       142 ---g~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          142 ---GCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             ---TSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             ---CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence               357888885  345667777776543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=91.70  E-value=0.54  Score=44.97  Aligned_cols=104  Identities=10%  Similarity=0.043  Sum_probs=63.5

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcc--eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS--STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL  147 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~--~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl  147 (795)
                      ..+.-|+|+|.++.+.. +|    +..++....     +.|.  .++...  ..+++++.+|-. ....+ ....+-||.
T Consensus        20 ~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   92 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKT-SI----LYRLHLGDVVTTVPTVGVNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDA   92 (189)
T ss_dssp             TSCEEEEEEEETTSSHH-HH----HHHTCCSCCEEECSSTTCCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCE
T ss_pred             CCceEEEEECCCCCCHH-HH----HHHHHcCCCCCcCCCCceEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCE
Confidence            45677999999998886 77    555543221     1122  223333  467888888621 12221 224567999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      +|+|+|++..      ..|+.....+..+++.   .+.| ++.|++..|.
T Consensus        93 ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  135 (189)
T 2x77_A           93 VIYVVDSTDR------DRMGVAKHELYALLDEDELRKSL-LLIFANKQDL  135 (189)
T ss_dssp             EEEEEETTCC------TTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTS
T ss_pred             EEEEEeCCCH------HHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCC
Confidence            9999999853      3355555555566554   3555 6777888885

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=91.48  E-value=1.7  Score=41.93  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=45.7

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCC-----CCCcceEEEe-cCceeeEEEEeCCC-CChHHH----HHHHhhhce
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGALSSTVSS-SKYRLRTSVLQAPH-GDLVGC----MEMAKVADL  147 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~g~~tv~~-~r~k~Ritfie~~~-~dl~~~----LD~aKvADl  147 (795)
                      ..=|+|+|.++.+.. +|++.+...+....     .....+.+.. +.....++++..+- ..+..+    -...+-||.
T Consensus        20 ~~ki~~vG~~~vGKT-sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (196)
T 3llu_A           20 KPRILLMGLRRSGKS-SIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA   98 (196)
T ss_dssp             CCEEEEEESTTSSHH-HHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred             ceEEEEECCCCCCHH-HHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence            344899999998876 67333232221110     0013333322 13456889998863 223444    367788999


Q ss_pred             EEEeeeCCC
Q 003796          148 VAFVASASS  156 (795)
Q Consensus       148 Vll~idas~  156 (795)
                      +|||+|++.
T Consensus        99 ~i~v~d~~~  107 (196)
T 3llu_A           99 LIYVIDAQD  107 (196)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEECCC
Confidence            999999985

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.48  E-value=0.97  Score=43.30  Aligned_cols=105  Identities=10%  Similarity=-0.022  Sum_probs=61.0

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCCC-----C-c----ceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----A-L----SSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~-g----~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvA  145 (795)
                      .++-|+|+|.++.+.. +|    +..|+.....     . |    ..++..+....+++|+.+|- ..... .....+-|
T Consensus        24 ~~~ki~v~G~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (193)
T 2oil_A           24 FVFKVVLIGESGVGKT-NL----LSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA   98 (193)
T ss_dssp             EEEEEEEESSTTSSHH-HH----HHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred             cceEEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            3456999999998876 77    4444332211     1 2    12333343456788888763 12222 34456789


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      |.+|||+|++..      ..|+ ....+|..+..+.-  ..++.|++..|.
T Consensus        99 d~vi~v~D~~~~------~s~~-~~~~~l~~i~~~~~~~~piilv~nK~Dl  142 (193)
T 2oil_A           99 VGALLVFDLTKH------QTYA-VVERWLKELYDHAEATIVVMLVGNKSDL  142 (193)
T ss_dssp             CEEEEEEETTCH------HHHH-THHHHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred             CEEEEEEECCCH------HHHH-HHHHHHHHHHHhcCCCCeEEEEEECCCc
Confidence            999999999853      2232 22345555555422  235667888775

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.47  E-value=2.9  Score=40.12  Aligned_cols=110  Identities=10%  Similarity=0.069  Sum_probs=61.4

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCcc---eEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEE
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGALS---STVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVA  149 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVl  149 (795)
                      .+++-|+|+|.++.+.. +|++.|+..- .. +..+.+.   ..+.......++.|+..|- .....+. ...+-||.+|
T Consensus        12 ~~~~ki~v~G~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKS-ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHH-HHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHH-HHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            34566999999998875 6733333211 01 1111121   2233333345788998873 2333333 4467799999


Q ss_pred             EeeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +++|++..      ..|+.   +-.++++.+...+.| ++.|++..|.
T Consensus        91 ~v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl  131 (206)
T 2bov_A           91 CVFSITEM------ESFAATADFREQILRVKEDENVP-FLLVGNKSDL  131 (206)
T ss_dssp             EEEETTCH------HHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTC
T ss_pred             EEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCc
Confidence            99999853      22322   223344333334666 6677888885

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=91.38  E-value=1.7  Score=48.25  Aligned_cols=129  Identities=9%  Similarity=0.076  Sum_probs=73.6

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CC--------cceEEEecCceeeEEEEeCCC-----------
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA--------LSSTVSSSKYRLRTSVLQAPH-----------  132 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~--------g~~tv~~~r~k~Ritfie~~~-----------  132 (795)
                      ..+.-|+|+|+++.+.+ +|    ++.+++...     ..        |.+.+  ..  +.++++..+-           
T Consensus       178 ~~~~kvaivG~~gvGKS-TL----ln~l~g~~~~~v~~~~gtT~d~~~~~i~~--~g--~~~~l~Dt~G~~~~~~~~~~~  248 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKS-TL----FNAILNKERALVSPIPGTTRDPVDDEVFI--DG--RKYVFVDTAGLRRKSRVEPRT  248 (439)
T ss_dssp             CSCEEEEEECSTTSSHH-HH----HHHHHTSTTEEECCCC------CCEEEEE--TT--EEEEESSCSCC----------
T ss_pred             ccCceEEEECCCCCCHH-HH----HHHHhCCcccccCCCCCCcCCceEEEEEE--CC--EEEEEEECCCCccccccchhh
Confidence            34678999999998886 77    444433221     00        22221  21  2344433320           


Q ss_pred             ---CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh---hHHHHHHH
Q 003796          133 ---GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK---RKDLKKMC  206 (795)
Q Consensus       133 ---~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk---~~~~kK~l  206 (795)
                         -.....+.+...||.||+++|++.+        +......++..+...|.|- +.|++..|...+.   .....+.+
T Consensus       249 ~e~~~~~~~~~~i~~ad~vllv~d~~~~--------~~~~~~~i~~~l~~~~~~~-ilv~NK~Dl~~~~~~~~~~~~~~~  319 (439)
T 1mky_A          249 VEKYSNYRVVDSIEKADVVVIVLDATQG--------ITRQDQRMAGLMERRGRAS-VVVFNKWDLVVHREKRYDEFTKLF  319 (439)
T ss_dssp             -CCSCCHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCEE-EEEEECGGGSTTGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCE-EEEEECccCCCchhhHHHHHHHHH
Confidence               1122346778899999999999865        4444466777788888764 4556666641011   23344455


Q ss_pred             HhhcccccCCCCeeEEeCC
Q 003796          207 ISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       207 k~~f~~ef~~~~Klf~l~~  225 (795)
                      ...+...  .++.++.+|.
T Consensus       320 ~~~~~~~--~~~~~~~~SA  336 (439)
T 1mky_A          320 REKLYFI--DYSPLIFTSA  336 (439)
T ss_dssp             HHHCGGG--TTSCEEECBT
T ss_pred             HHHhccC--CCCcEEEEEC
Confidence            4444322  2567888883

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.31  E-value=1.3  Score=41.39  Aligned_cols=105  Identities=7%  Similarity=0.040  Sum_probs=59.4

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvA  145 (795)
                      .+.-|+|+|+++.+.. +|    +..|.....      +.|    ..++..+....+++|+.+|-. ....+ ....+-|
T Consensus         6 ~~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   80 (177)
T 1wms_A            6 SLFKVILLGDGGVGKS-SL----MNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS   80 (177)
T ss_dssp             EEEEEEEECCTTSSHH-HH----HHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred             ceeEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence            3556999999998876 77    444432221      112    223333433458899998732 23333 2445679


Q ss_pred             ceEEEeeeCCCccccccccccC---hHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYID---SFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe---~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      |.+|+++|++..      ..|+   .+-.++...+..   .+.| ++.|++..|.
T Consensus        81 ~~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl  128 (177)
T 1wms_A           81 DCCLLTFSVDDS------QSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDI  128 (177)
T ss_dssp             SEEEEEEETTCH------HHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTC
T ss_pred             CEEEEEEECcCH------HHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcc
Confidence            999999999853      2232   223333333321   3444 6677888875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.29  E-value=0.36  Score=46.50  Aligned_cols=105  Identities=9%  Similarity=-0.010  Sum_probs=60.9

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCCC-C---------cceEEEecCceeeEEEEeCCCC-ChH-HHHHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-A---------LSSTVSSSKYRLRTSVLQAPHG-DLV-GCMEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-~---------g~~tv~~~r~k~Ritfie~~~~-dl~-~~LD~aKvA  145 (795)
                      ..+=|+|+|.++.+.. +|    +..|+..... .         ...++........++|+.++-. ... -.....+-|
T Consensus        22 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKT-SF----LFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             ECEEEEEEESTTSSHH-HH----HHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             eeeEEEEECCCCcCHH-HH----HHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            4456999999998876 77    4444332211 1         2233333333456777776521 112 234567789


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~  194 (795)
                      |.+|||+|++..      ..|+. ..+++..+..+..+  .++.|++..|.
T Consensus        97 d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl  140 (191)
T 3dz8_A           97 MGFILMYDITNE------ESFNA-VQDWATQIKTYSWDNAQVILVGNKCDM  140 (191)
T ss_dssp             CEEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             CEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence            999999999853      23432 23466666664322  25666788885

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=91.29  E-value=0.93  Score=50.57  Aligned_cols=101  Identities=13%  Similarity=0.196  Sum_probs=67.2

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC---C--c------ceEEEecCceeeEEEEeCCC-C--------ChH
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A--L------SSTVSSSKYRLRTSVLQAPH-G--------DLV  136 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~--g------~~tv~~~r~k~Ritfie~~~-~--------dl~  136 (795)
                      ...+-|+|+|..+.+++ +|    +..|+..+..   .  |      ..++.... ..++.|+.+|- .        .+.
T Consensus        32 ~~~~kI~IvG~~~vGKS-TL----in~L~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~l~liDTpG~~d~~~l~~~~~~  105 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKS-SF----MNALVGQNVSIVSDYAGTTTDPVYKSMELHP-IGPVTLVDTPGLDDVGELGRLRVE  105 (423)
T ss_dssp             CCCEEEEEECSCSTTTT-TT----TTSSCC-------------CCCCEEEEEETT-TEEEEEEECSSTTCCCTTCCCCHH
T ss_pred             CCCEEEEEECCCCCCHH-HH----HHHHHcCCCCccCCCCCeeeeeEEEEEEECC-CCeEEEEECcCCCcccchhHHHHH
Confidence            34567999999987775 56    5555443321   1  1      12222222 23889998873 1        234


Q ss_pred             HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .++.+..-||.+|+|+|++          +.....+++..++..++| ++.|++..|.
T Consensus       106 ~~~~~l~~aD~vllVvD~~----------~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl  152 (423)
T 3qq5_A          106 KARRVFYRADCGILVTDSA----------PTPYEDDVVNLFKEMEIP-FVVVVNKIDV  152 (423)
T ss_dssp             HHHHHHTSCSEEEEECSSS----------CCHHHHHHHHHHHHTTCC-EEEECCCCTT
T ss_pred             HHHHHHhcCCEEEEEEeCC----------ChHHHHHHHHHHHhcCCC-EEEEEeCcCC
Confidence            4577788899999999994          456678899999999998 6677888885

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.25  E-value=0.69  Score=42.87  Aligned_cols=102  Identities=11%  Similarity=0.020  Sum_probs=51.0

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC-----cc---eEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEEE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LS---STVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVAF  150 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~---~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVll  150 (795)
                      =|+|+|.++.+.. +|    ++.|++.....     |.   .++.......++.++..+-.. ...+ -...+-||.+|+
T Consensus         4 ki~~vG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (166)
T 3q72_A            4 KVLLLGAPGVGKS-AL----ARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   78 (166)
T ss_dssp             EEEEEESTTSSHH-HH----HHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred             EEEEECCCCCCHH-HH----HHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence            4899999998876 77    56565432211     11   223334445677788775211 2222 234578999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~  194 (795)
                      ++|.+..      ..|+.-...+..+++   ..+.| ++.|++..|.
T Consensus        79 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  118 (166)
T 3q72_A           79 VYSVTDK------GSFEKASELRVQLRRARQTDDVP-IILVGNKSDL  118 (166)
T ss_dssp             EEETTCH------HHHHHHHHHHHHHHHCC---CCC-EEEEEECTTC
T ss_pred             EEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEecccc
Confidence            9999842      234433332233333   24555 4566787774

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=91.16  E-value=0.83  Score=46.56  Aligned_cols=103  Identities=10%  Similarity=0.015  Sum_probs=58.6

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC-----CcceEE-----EecCceeeEEEEeCCCCC------------
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----ALSSTV-----SSSKYRLRTSVLQAPHGD------------  134 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~g~~tv-----~~~r~k~Ritfie~~~~d------------  134 (795)
                      ..+.-|+|+|.++.+.. +|    +..|......     .+++|.     ...-...++.|+..| .-            
T Consensus        20 ~~~~~I~lvG~~g~GKS-tl----~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTp-G~~~~~~~~~~~~~   93 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKS-AA----GNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTP-DMFSWKDHCEALYK   93 (260)
T ss_dssp             -CCEEEEEEECTTSCHH-HH----HHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECC-GGGGSSCCCHHHHH
T ss_pred             CCceEEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECc-CCCCCCCCHHHHHH
Confidence            45677999999998876 67    3333332210     011221     111113689999887 31            


Q ss_pred             --hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCc
Q 003796          135 --LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPT  194 (795)
Q Consensus       135 --l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~  194 (795)
                        ...+...++.||.+|+|+|++.         |+.....++..|...     +.|.++.|-+..|.
T Consensus        94 ~i~~~~~~~~~~~d~il~V~d~~~---------~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl  151 (260)
T 2xtp_A           94 EVQRCYLLSAPGPHVLLLVTQLGR---------YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDL  151 (260)
T ss_dssp             HHHHHHHHHTTCCSEEEEEEETTC---------CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred             HHHHHHHhcCCCCcEEEEEEeCCC---------CCHHHHHHHHHHHHHhCchhhccEEEEEEccccc
Confidence              1122234567999999999972         555566666666554     55654444336664

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=91.13  E-value=0.69  Score=50.06  Aligned_cols=89  Identities=9%  Similarity=0.099  Sum_probs=49.6

Q ss_pred             eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-hhHH
Q 003796          123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-KRKD  201 (795)
Q Consensus       123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K-k~~~  201 (795)
                      ..+.|+.++ .--.+...++..||+||+|+|++.+      ..+.....      +...+| ++.|++..|...+ ....
T Consensus       172 ~~~iiiDTp-Gi~~~~~~~~~~aD~vl~V~d~~~~------~~~~~l~~------~~~~~p-~ivVlNK~Dl~~~~~~~~  237 (355)
T 3p32_A          172 FDVILIETV-GVGQSEVAVANMVDTFVLLTLARTG------DQLQGIKK------GVLELA-DIVVVNKADGEHHKEARL  237 (355)
T ss_dssp             CCEEEEEEC-SCSSHHHHHHTTCSEEEEEEESSTT------CTTTTCCT------TSGGGC-SEEEEECCCGGGHHHHHH
T ss_pred             CCEEEEeCC-CCCcHHHHHHHhCCEEEEEECCCCC------ccHHHHHH------hHhhcC-CEEEEECCCCcChhHHHH
Confidence            568889887 6445566677999999999998864      11111000      112234 4667888885212 1223


Q ss_pred             HHHHHHhhcccccC----CCCeeEEeCC
Q 003796          202 LKKMCISSLTSEFP----EDCKFYAADT  225 (795)
Q Consensus       202 ~kK~lk~~f~~ef~----~~~Klf~l~~  225 (795)
                      ..+.++..+...-+    -+..++.+|.
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA  265 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSA  265 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEc
Confidence            34444444321111    1457888884

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.12  E-value=1  Score=43.23  Aligned_cols=144  Identities=12%  Similarity=0.110  Sum_probs=75.2

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhh-c-cCCCCCcc---eEEEecCceeeEEEEeCCCC-ChHHHHHHHhhhceEEEe
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQL-S-SEGTGALS---STVSSSKYRLRTSVLQAPHG-DLVGCMEMAKVADLVAFV  151 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~-~~~~~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~LD~aKvADlVll~  151 (795)
                      ..+-|+|+|.++.+.. +|++.++..- . .+..+.+.   .++......-.+.++..+-. ...++....+-||.+|++
T Consensus        20 ~~~ki~vvG~~~vGKT-sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv   98 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKS-ALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVV   98 (187)
T ss_dssp             CEEEEEEECCTTSSHH-HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEEEE
T ss_pred             ceEEEEEECCCCCcHH-HHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEEEE
Confidence            3456999999998876 6733333211 0 01111121   22333434457778877621 122344577889999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHh------cCCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEE
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRS------LGLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYA  222 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~a------qG~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~  222 (795)
                      +|.+..      ..|+.- .+.|..+..      .+.| ++.|++..|....+   ....++..+..       +..+|.
T Consensus        99 ~d~~~~------~s~~~~-~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~e  163 (187)
T 3c5c_A           99 YSVDSR------QSFDSS-SSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQVTKAEGVALAGRF-------GCLFFE  163 (187)
T ss_dssp             EETTCH------HHHHHH-HHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSSCHHHHHHHHHHH-------TCEEEE
T ss_pred             EECCCH------HHHHHH-HHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCccCHHHHHHHHHHc-------CCcEEE
Confidence            999843      234332 233444433      3666 66777877751111   12233333221       356777


Q ss_pred             eCC-H--HHHHHHHHHHh
Q 003796          223 ADT-K--DELHKFLWLFK  237 (795)
Q Consensus       223 l~~-~--~E~~nL~R~Is  237 (795)
                      +|. .  ..+..|...|.
T Consensus       164 ~Sa~~~g~gv~~lf~~l~  181 (187)
T 3c5c_A          164 VSACLDFEHVQHVFHEAV  181 (187)
T ss_dssp             CCSSSCSHHHHHHHHHHH
T ss_pred             EeecCccccHHHHHHHHH
Confidence            775 2  34555555554

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.11  E-value=0.69  Score=44.73  Aligned_cols=106  Identities=12%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKV  144 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKv  144 (795)
                      .+++-|+|+|.++.+.. +|    +..|......      .|    ..++.......+++|+..|-.. +.. .....+-
T Consensus         6 ~~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKT-SL----MNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG   80 (207)
T ss_dssp             -CEEEEEEECCTTSSHH-HH----HHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred             CcceEEEEECcCCCCHH-HH----HHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence            45677999999998876 77    4444332211      12    2233333334678888886211 111 2344577


Q ss_pred             hceEEEeeeCCCccccccccccC---hHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          145 ADLVAFVASASSFSEESMSYYID---SFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe---~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      ||.+|+|+|++.+      ..|+   .+-.+++..+..   .+.| ++.|++..|.
T Consensus        81 ~d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  129 (207)
T 1vg8_A           81 ADCCVLVFDVTAP------NTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDL  129 (207)
T ss_dssp             CSEEEEEEETTCH------HHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTS
T ss_pred             CcEEEEEEECCCH------HHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCC
Confidence            9999999999853      2232   222233332211   3444 5667888885

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.09  E-value=0.64  Score=43.19  Aligned_cols=106  Identities=7%  Similarity=0.007  Sum_probs=57.7

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHh
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAK  143 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aK  143 (795)
                      ...++-|+|+|.++.+.. +|    +..|.....      +.|    ..++.......+++++..|-.. ...+ ....+
T Consensus         3 ~~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   77 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKT-SL----VLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR   77 (170)
T ss_dssp             -CEEEEEEEECCTTSCHH-HH----HHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST
T ss_pred             CCcceEEEEECcCCCCHH-HH----HHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc
Confidence            345667999999998876 67    444432211      112    2233344445578888886321 2222 22346


Q ss_pred             hhceEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      -||.+|+++|++..      ..|+. ...+|..++.   .+.| ++.|++..|.
T Consensus        78 ~~d~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~p-iilv~nK~Dl  123 (170)
T 1z08_A           78 DSNGAILVYDITDE------DSFQK-VKNWVKELRKMLGNEIC-LCIVGNKIDL  123 (170)
T ss_dssp             TCSEEEEEEETTCH------HHHHH-HHHHHHHHHHHHGGGSE-EEEEEECGGG
T ss_pred             cCCEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCe-EEEEEECccc
Confidence            79999999999853      22332 2233444433   3433 5667888775

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=90.94  E-value=0.95  Score=46.70  Aligned_cols=100  Identities=13%  Similarity=0.035  Sum_probs=57.1

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCCC----c----ceEEEecCceeeEEEEeCCC-CChHH------H-HHH-
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----L----SSTVSSSKYRLRTSVLQAPH-GDLVG------C-MEM-  141 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g----~~tv~~~r~k~Ritfie~~~-~dl~~------~-LD~-  141 (795)
                      +.-|+|+|.++.+.. +|    +..|++.....    |    ..+.........++++..|- .++.+      + -+. 
T Consensus         5 ~~kI~lvG~~nvGKT-sL----~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~   79 (258)
T 3a1s_A            5 MVKVALAGCPNVGKT-SL----FNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYL   79 (258)
T ss_dssp             EEEEEEECCTTSSHH-HH----HHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHH-HH----HHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence            456999999998886 77    45554422110    1    11111111135888998873 11211      1 112 


Q ss_pred             -HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          142 -AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       142 -aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                       ..-+|+||+++|++.         ++. ...++..+...|.| ++.|++..|.
T Consensus        80 ~~~~~d~ii~V~D~t~---------~~~-~~~~~~~l~~~~~p-vilv~NK~Dl  122 (258)
T 3a1s_A           80 LKGDADLVILVADSVN---------PEQ-SLYLLLEILEMEKK-VILAMTAIDE  122 (258)
T ss_dssp             HHSCCSEEEEEEETTS---------CHH-HHHHHHHHHTTTCC-EEEEEECHHH
T ss_pred             hhcCCCEEEEEeCCCc---------hhh-HHHHHHHHHhcCCC-EEEEEECcCC
Confidence             256999999999985         322 23355556667888 4556777664

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=90.62  E-value=1.6  Score=41.58  Aligned_cols=107  Identities=11%  Similarity=0.029  Sum_probs=60.1

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCC------CCCcc---eEEEecCceeeEEEEeCCCCC-hHHHH-HHHhh
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGALS---STVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKV  144 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~---~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKv  144 (795)
                      ...+.-|+|+|.++.+.. +|    +..|....      .+.+.   .++........+.++.++-.. ...+. ...+-
T Consensus         4 ~~~~~ki~v~G~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   78 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKT-AL----LHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD   78 (184)
T ss_dssp             --CEEEEEEEESTTSSHH-HH----HHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CceEEEEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCC
Confidence            345566999999998876 77    44443221      11121   122333345678888887221 22222 24577


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      ||.+||++|++..      ..|+.--..++..++.+  +.| ++.|++..|.
T Consensus        79 ~~~~i~v~d~~~~------~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl  123 (184)
T 1m7b_A           79 SDAVLICFDISRP------ETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDL  123 (184)
T ss_dssp             CSEEEEEEETTCH------HHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred             CcEEEEEEECCCH------HHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchh
Confidence            9999999999853      22433223344555443  444 6667788775

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=90.57  E-value=2.3  Score=50.45  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=52.8

Q ss_pred             eeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          123 LRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       123 ~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .+|.+|-+|- -| ...+.-+..++|-+|+||||..|        ++..|+.+|+.+...|+|.+ .||+.+|.
T Consensus        85 ~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveG--------V~~qT~~v~~~a~~~~lp~i-~~iNKiDr  149 (709)
T 4fn5_A           85 YRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG--------VEPQSETVWRQANKYGVPRI-VYVNKMDR  149 (709)
T ss_dssp             EEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHHTCCEE-EEEECSSS
T ss_pred             EEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCC--------CchhHHHHHHHHHHcCCCeE-EEEccccc
Confidence            5799999872 34 34588889999999999999965        89999999999999999965 46788874

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=90.50  E-value=0.96  Score=47.35  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=42.1

Q ss_pred             eeEEEEeCCCCC-----------h-----HHHHHHHhhhceEEEeeeC-CCccccccccccC-hHHHHHHHHHHhcCCCc
Q 003796          123 LRTSVLQAPHGD-----------L-----VGCMEMAKVADLVAFVASA-SSFSEESMSYYID-SFGNQCLSVFRSLGLPS  184 (795)
Q Consensus       123 ~Ritfie~~~~d-----------l-----~~~LD~aKvADlVll~ida-s~g~~~~~~~~fe-~eg~e~L~~l~aqG~P~  184 (795)
                      ..++|+..| .-           +     .....+.+-||.+||++|+ +.+        +. .+...++..+...|.| 
T Consensus       131 ~~~~lvDTp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~--------~~~~~~~~i~~~~~~~~~~-  200 (315)
T 1jwy_B          131 VNLTLVDLP-GITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD--------LANSDALQLAKEVDPEGKR-  200 (315)
T ss_dssp             CSEEEEECC-CCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC--------STTCSHHHHHHHHCSSCSS-
T ss_pred             CCcEEEECC-CCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc--------hhhhHHHHHHHHhCCCCCc-
Confidence            468888876 31           1     2244566789999999997 432        32 2235788888878876 


Q ss_pred             eEEEeccCCc
Q 003796          185 TAVLIRDLPT  194 (795)
Q Consensus       185 vigVl~~Ld~  194 (795)
                      ++.|++..|.
T Consensus       201 ~i~v~NK~Dl  210 (315)
T 1jwy_B          201 TIGVITKLDL  210 (315)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEcCccc
Confidence            5678888885

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.43  E-value=1.3  Score=42.50  Aligned_cols=105  Identities=9%  Similarity=-0.012  Sum_probs=61.1

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKV  144 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKv  144 (795)
                      .+++-|+|+|.++.+.. +|    +..|+.....      .|    ..++.......+++++..+-.. +.. .....+-
T Consensus        19 ~~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   93 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKS-CL----LLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG   93 (191)
T ss_dssp             CEEEEEEEESSTTSSHH-HH----HHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             CcceEEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence            34455999999998876 67    4444322211      11    2234444445678888876211 111 3456678


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      ||.+||++|++..      ..|+. ...+|..+..+   +.| ++.|++..|.
T Consensus        94 ~d~ii~v~d~~~~------~s~~~-~~~~l~~i~~~~~~~~p-iilv~nK~Dl  138 (191)
T 2a5j_A           94 AAGALLVYDITRR------ETFNH-LTSWLEDARQHSSSNMV-IMLIGNKSDL  138 (191)
T ss_dssp             CSEEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred             CCEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence            9999999999853      22332 23455555554   333 5667888885

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=90.29  E-value=4.8  Score=38.85  Aligned_cols=105  Identities=10%  Similarity=0.062  Sum_probs=58.9

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCC-----C-CCcceEEEe-cCceeeEEEEeCCCCC-----------hH-
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-----T-GALSSTVSS-SKYRLRTSVLQAPHGD-----------LV-  136 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~-~~g~~tv~~-~r~k~Ritfie~~~~d-----------l~-  136 (795)
                      ..+...|+|+|+++.++. +|    ++.+++..     . ..|.+.+.. -.....+.++..|.-.           +. 
T Consensus        23 ~~~~~~v~lvG~~g~GKS-TL----l~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKS-SA----LNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             CSCSEEEEEEECTTSSHH-HH----HTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHH-HH----HHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHH
Confidence            356678999999998886 67    77666543     1 113222110 0011245667665211           11 


Q ss_pred             ---HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          137 ---GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       137 ---~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                         .++.....+|.+++++|++.+        ......+++..+...|+|.+ .|++..|.
T Consensus        98 ~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~-~v~nK~D~  149 (210)
T 1pui_A           98 ALGEYLEKRQSLQGLVVLMDIRHP--------LKDLDQQMIEWAVDSNIAVL-VLLTKADK  149 (210)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCCEE-EEEECGGG
T ss_pred             HHHHHHHhhhcccEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeE-EEEecccC
Confidence               222223578999999999864        33334567777778898854 45565553

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=90.16  E-value=1.9  Score=42.42  Aligned_cols=105  Identities=11%  Similarity=0.061  Sum_probs=56.3

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCC------CCCc---ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhc
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVAD  146 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvAD  146 (795)
                      .++-|+|+|.++.+.. +|    +..|+...      .+.+   ..++.......+++++.++-. .+..+.. ..+-||
T Consensus        33 ~~~ki~vvG~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  107 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKT-SL----LMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDAS  107 (214)
T ss_dssp             CEEEEEEEECTTSSHH-HH----HHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEE
T ss_pred             ceEEEEEECcCCCCHH-HH----HHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence            3567999999998876 67    44443221      1111   122333444557888888731 2223222 356799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      .+||++|++..      ..|+.....++..+..+  +.| ++.|++..|.
T Consensus       108 ~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  150 (214)
T 2j1l_A          108 VLLLCFDVTSP------NSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDL  150 (214)
T ss_dssp             EEEEEEETTCH------HHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGG
T ss_pred             EEEEEEECcCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence            99999999853      23443333455555543  555 5667787775

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.11  E-value=1.1  Score=43.54  Aligned_cols=104  Identities=13%  Similarity=0.015  Sum_probs=59.5

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CC----cceEEEecCceeeEEEEeCCCCCh--HH-HHHHHh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GA----LSSTVSSSKYRLRTSVLQAPHGDL--VG-CMEMAK  143 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~----g~~tv~~~r~k~Ritfie~~~~dl--~~-~LD~aK  143 (795)
                      ..++=|+|+|.++.+.. +|    ++.|.....      +.    ....+..+....+++|+.++ ..-  .. .....+
T Consensus        23 ~~~~ki~v~G~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~-G~~~~~~~~~~~~~   96 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKS-CL----LHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA-GQERFRSVTRSYYR   96 (200)
T ss_dssp             CEEEEEEEEESTTSSHH-HH----HHHHHC------------CCEEEEEEEETTEEEEEEEECCT-THHHHSCCCHHHHT
T ss_pred             CcceEEEEECcCCCCHH-HH----HHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCC-CcHhHHHHHHHHhc
Confidence            34566999999998876 67    444432211      11    22333344445688888887 321  11 234567


Q ss_pred             hhceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      -||.+||++|++..      ..|+. ...+|..++.+   +.| ++.|++..|.
T Consensus        97 ~~d~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~p-iilv~nK~Dl  142 (200)
T 2o52_A           97 GAAGALLVYDITSR------ETYNS-LAAWLTDARTLASPNIV-VILCGNKKDL  142 (200)
T ss_dssp             TCSEEEEEEETTCH------HHHHT-HHHHHHHHHHHTCTTCE-EEEEEECGGG
T ss_pred             cCCEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCc-EEEEEECCCc
Confidence            89999999999853      22322 23444444433   444 5667887775

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.07  E-value=0.79  Score=44.93  Aligned_cols=103  Identities=7%  Similarity=-0.042  Sum_probs=59.0

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCc----------eeeEEEEeCCCC-ChHH
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKY----------RLRTSVLQAPHG-DLVG  137 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g----~~tv~~~r~----------k~Ritfie~~~~-dl~~  137 (795)
                      .+-|+|+|.++.+.. +|    +..|+......      +    ..++.....          ..+++|+.++-. .+..
T Consensus        25 ~~ki~vvG~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           25 LIKLLALGDSGVGKT-TF----LYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             EEEEEEESCTTSSHH-HH----HHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             eEEEEEECcCCCCHH-HH----HHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            456999999998876 77    55554433222      1    111222221          457888888621 1222


Q ss_pred             -HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796          138 -CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT  194 (795)
Q Consensus       138 -~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~  194 (795)
                       .....+-||.+|||+|++..      ..|+ ...++|..+..+    +. .++.|++..|.
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~------~s~~-~~~~~l~~i~~~~~~~~~-piilV~NK~Dl  153 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQ------QSFL-NVRNWMSQLQANAYCENP-DIVLIGNKADL  153 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCH------HHHH-HHHHHHHTCCCCCTTTCC-EEEEEEECTTC
T ss_pred             HHHHHhcCCCEEEEEEECcCH------HHHH-HHHHHHHHHHHhcCcCCC-CEEEEEECCcc
Confidence             33556789999999999853      1222 122444444442    33 36777888885

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=89.86  E-value=0.69  Score=47.73  Aligned_cols=135  Identities=13%  Similarity=0.067  Sum_probs=74.2

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC----c------ceEEEecCceeeEEEEeCCC-CChHH---------HH-
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----L------SSTVSSSKYRLRTSVLQAPH-GDLVG---------CM-  139 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g------~~tv~~~r~k~Ritfie~~~-~dl~~---------~L-  139 (795)
                      -|+++|.++++.. +|    +..|++.....    |      ..++..+  ...++++..|- .++.+         .+ 
T Consensus         3 kI~lvG~~n~GKS-TL----~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~   75 (256)
T 3iby_A            3 HALLIGNPNCGKT-TL----FNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVANAEGISQDEQIA   75 (256)
T ss_dssp             EEEEEESTTSSHH-HH----HHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC------CHHHHHH
T ss_pred             EEEEECCCCCCHH-HH----HHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccccccCCCHHHHHH
Confidence            4789999998886 77    44454432110    1      1122222  25888998873 12221         11 


Q ss_pred             -H--HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccccC
Q 003796          140 -E--MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSEFP  215 (795)
Q Consensus       140 -D--~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk-~~~~kK~lk~~f~~ef~  215 (795)
                       +  ...-||.||+|+|++.         . +....++..|...|.| ++.|++..|...++ .....+.+.+.+     
T Consensus        76 ~~~~~~~~~d~vi~VvDas~---------~-~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~~~~~~~~~l~~~l-----  139 (256)
T 3iby_A           76 AQSVIDLEYDCIINVIDACH---------L-ERHLYLTSQLFELGKP-VVVALNMMDIAEHRGISIDTEKLESLL-----  139 (256)
T ss_dssp             HHHHHHSCCSEEEEEEEGGG---------H-HHHHHHHHHHTTSCSC-EEEEEECHHHHHHTTCEECHHHHHHHH-----
T ss_pred             HHHHhhCCCCEEEEEeeCCC---------c-hhHHHHHHHHHHcCCC-EEEEEEChhcCCcCCcHHHHHHHHHHc-----
Confidence             1  1256999999999983         2 2234566667777887 55667777741011 001122233333     


Q ss_pred             CCCeeEEeCC--HHHHHHHHHHHhhc
Q 003796          216 EDCKFYAADT--KDELHKFLWLFKEQ  239 (795)
Q Consensus       216 ~~~Klf~l~~--~~E~~nL~R~Is~~  239 (795)
                       +..++.+|.  ..-+..|...|...
T Consensus       140 -g~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          140 -GCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             -CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             -CCCEEEEECCCCCCHHHHHHHHHhh
Confidence             467888884  33466666666544

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=89.77  E-value=2.4  Score=41.21  Aligned_cols=104  Identities=9%  Similarity=-0.011  Sum_probs=59.7

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhc
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVAD  146 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvAD  146 (795)
                      ++-|+|+|.++.++. +|    +..|+....      +.|    ..++.......++.|+..+-. ....+ ....+-||
T Consensus        29 ~~ki~vvG~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (201)
T 2hup_A           29 LFKLVLVGDASVGKT-CV----VQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN  103 (201)
T ss_dssp             EEEEEEEECTTSSHH-HH----HHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred             ceEEEEECcCCCCHH-HH----HHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence            456999999998876 67    444432221      111    223334443468888888632 23333 34567899


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      .+|||+|++..      ..|+.. .++|..+..+.-  ..++.|++..|.
T Consensus       104 ~iilv~D~~~~------~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl  146 (201)
T 2hup_A          104 GAILAYDITKR------SSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDL  146 (201)
T ss_dssp             EEEEEEETTBH------HHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEEECCCH------HHHHHH-HHHHHHHHHhcCCCCCEEEEEECCcc
Confidence            99999999843      224322 245555554432  234566788885

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=89.38  E-value=2.2  Score=40.90  Aligned_cols=106  Identities=9%  Similarity=0.052  Sum_probs=47.6

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHh---hc-cCCCCCc----ceEEEecCc--eeeEEEEeCCCCC--hHHH-HHHHhhh
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQ---LS-SEGTGAL----SSTVSSSKY--RLRTSVLQAPHGD--LVGC-MEMAKVA  145 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~---~~-~~~~~~g----~~tv~~~r~--k~Ritfie~~~~d--l~~~-LD~aKvA  145 (795)
                      +.-|+|+|.++.+.. +|++.|+..   +. .+..+.|    ..++..+..  ..+++|+.+| ..  ...+ ....+-|
T Consensus        20 ~~~i~v~G~~~~GKs-sli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           20 RCKVAVVGEATVGKS-ALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA-GSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETT-TTHHHHHHHSTTCCCC
T ss_pred             ceEEEEECCCCCCHH-HHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECC-CcHHHHHHHHHHHhhC
Confidence            457999999987775 663322322   11 1111112    223444433  5688999887 43  2222 2335569


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhc------CCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL------GLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq------G~P~vigVl~~Ld~  194 (795)
                      |.+|||+|++.+      ..|+.. ..+|..+..+      +.| ++.|++..|.
T Consensus        98 d~~i~v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl  144 (208)
T 2yc2_C           98 YYAILVFDVSSM------ESFESC-KAWFELLKSARPDRERPLR-AVLVANKTDL  144 (208)
T ss_dssp             CEEEEEEETTCH------HHHHHH-HHHHHHHHHHCSCTTSCCE-EEEEEECC--
T ss_pred             cEEEEEEECCCH------HHHHHH-HHHHHHHHHhhcccccCCc-EEEEEECccc
Confidence            999999999853      234332 3555555553      444 6677888886

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=89.37  E-value=1.8  Score=42.36  Aligned_cols=105  Identities=10%  Similarity=-0.006  Sum_probs=58.6

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC------cc----eEEEec-CceeeEEEEeCCCCC-hHH-HHHHHh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------LS----STVSSS-KYRLRTSVLQAPHGD-LVG-CMEMAK  143 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g~----~tv~~~-r~k~Ritfie~~~~d-l~~-~LD~aK  143 (795)
                      ..++=|+|+|.++.+.. +|    +..|+......      |.    ..+... ....+++++..+-.. ... .-...+
T Consensus         9 ~~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKT-TY----INRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYI   83 (218)
T ss_dssp             -CEEEEEEECCTTSSHH-HH----HCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred             cCccEEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhh
Confidence            34667999999998876 67    66665332211      21    122211 112568888876211 111 123356


Q ss_pred             hhceEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      -||.+|+++|++.+      ..|+.. .+++..+..   .+.| ++.|++..|.
T Consensus        84 ~~d~~i~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~~p-iilv~nK~Dl  129 (218)
T 4djt_A           84 GASGAILFFDVTSR------ITCQNL-ARWVKEFQAVVGNEAP-IVVCANKIDI  129 (218)
T ss_dssp             TCSEEEEEEETTCH------HHHHTH-HHHHHHHHHHHCSSSC-EEEEEECTTC
T ss_pred             cCCEEEEEEeCCCH------HHHHHH-HHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence            69999999999864      223222 233344433   3544 6677888886

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=89.35  E-value=2.6  Score=39.99  Aligned_cols=109  Identities=9%  Similarity=0.028  Sum_probs=56.3

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc---ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEEE
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL---SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVAF  150 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g---~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVll  150 (795)
                      +++-|+|+|.++.+.. +|++.|+..- .. +..+.+   ..++........++++.+|-.+ ...+ -...+-||.+|+
T Consensus        20 ~~~ki~vvG~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           20 TEYKLVVVGAGGVGKS-ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             EEEEEEEECSTTSSHH-HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             ceeEEEEECcCCCCHH-HHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            4567999999998876 7743333221 00 011111   1223333334568889887322 2332 344678999999


Q ss_pred             eeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++|++..      ..|+.   +-.++.......+.| ++.|++..|.
T Consensus        99 v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl  138 (190)
T 3con_A           99 VFAINNS------KSFADINLYREQIKRVKDSDDVP-MVLVGNKCDL  138 (190)
T ss_dssp             EEETTCH------HHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred             EEECcCH------HHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcC
Confidence            9999853      22322   222233333234665 5677888774

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=89.34  E-value=0.76  Score=44.39  Aligned_cols=107  Identities=14%  Similarity=0.089  Sum_probs=60.0

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCC------CCCcc---eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhh
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGALS---STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKV  144 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKv  144 (795)
                      ...+.-|+|+|.++.+.. +|    +..|....      .+.+.   .++......-++.|+.++-. ....+. ...+-
T Consensus        17 ~~~~~ki~~~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   91 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKT-SL----VVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN   91 (201)
T ss_dssp             ---CEEEEEECSTTSSHH-HH----HHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTT
T ss_pred             CCcceEEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCC
Confidence            345667999999998875 67    44443221      11121   12333333457778887621 122222 24567


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      ||.+||++|++..      ..|+.-...++..+..+  +.| ++.|++..|.
T Consensus        92 ~~~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  136 (201)
T 2q3h_A           92 TDIFLLCFSVVSP------SSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDL  136 (201)
T ss_dssp             CSEEEEEEETTCH------HHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGG
T ss_pred             CcEEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence            9999999999853      23443333566666654  555 5667787775

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=89.25  E-value=1.1  Score=43.58  Aligned_cols=104  Identities=9%  Similarity=-0.015  Sum_probs=60.1

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhc
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVAD  146 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvAD  146 (795)
                      ++-|+|+|.++.+.. +|    +..|.....      +.|    ..++..+....+++++..|-. .... .....+-||
T Consensus         8 ~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKS-CL----LLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH   82 (206)
T ss_dssp             EEEEEEEESTTSSHH-HH----HHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred             ceEEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence            456899999998876 77    444432221      111    223444443457888887631 1222 234467799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      .+|||+|++..      ..|+. ...+|..+..+..  ..++.|++..|.
T Consensus        83 ~vilv~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl  125 (206)
T 2bcg_Y           83 GIIIVYDVTDQ------ESFNG-VKMWLQEIDRYATSTVLKLLVGNKCDL  125 (206)
T ss_dssp             EEEEEEETTCH------HHHHH-HHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence            99999999853      22322 2334555555442  235667888885

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=89.24  E-value=1.6  Score=48.45  Aligned_cols=97  Identities=15%  Similarity=0.157  Sum_probs=61.6

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCCCC-----------hH-H
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPHGD-----------LV-G  137 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~------~tv~~~r~k~Ritfie~~~~d-----------l~-~  137 (795)
                      .|+|||.++.+.+ +|    +..|++...   ..  |.      .++...  .+.++++..+ .-           +. .
T Consensus         3 ~v~ivG~pnvGKS-tL----~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~--~~~~~l~DT~-G~~~~~~~~~~~~~~~~   74 (439)
T 1mky_A            3 TVLIVGRPNVGKS-TL----FNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--GKTFKLVDTC-GVFDNPQDIISQKMKEV   74 (439)
T ss_dssp             EEEEECCTTSSHH-HH----HHHHHC--------------CCSEEEEEET--TEEEEEEECT-TTTSSGGGCCCHHHHHH
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCCCceecCCCCCccceeeEEEEEC--CeEEEEEECC-CccccccchHHHHHHHH
Confidence            4899999998886 77    444443321   11  21      122222  2578888876 31           11 2


Q ss_pred             HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ..-+.+-||+||||+|+..|        +.....++...|+..+.| ++.|++..|.
T Consensus        75 ~~~~~~~ad~il~V~D~~~~--------~~~~d~~i~~~l~~~~~p-~ilv~NK~D~  122 (439)
T 1mky_A           75 TLNMIREADLVLFVVDGKRG--------ITKEDESLADFLRKSTVD-TILVANKAEN  122 (439)
T ss_dssp             HHHHHTTCSEEEEEEETTTC--------CCHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred             HHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence            34466889999999999865        544556777778888888 5677888886

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.21  E-value=2.6  Score=40.22  Aligned_cols=110  Identities=11%  Similarity=0.065  Sum_probs=59.3

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhcc--CCCCCcce---EEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEE
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSS--EGTGALSS---TVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVA  149 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~--~~~~~g~~---tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVl  149 (795)
                      ..+.-|+|+|.++.+.. +|++.|+..-..  +..+.+..   .+.......+++|+..|- .+... .....+-||.+|
T Consensus         6 ~~~~ki~vvG~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKS-SLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHH-HHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHH-HHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            44677999999998875 673333321101  01111211   122233345788888863 12223 234567799999


Q ss_pred             EeeeCCCccccccccccChHHH--HHHHHHHh--cCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGN--QCLSVFRS--LGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~--e~L~~l~a--qG~P~vigVl~~Ld~  194 (795)
                      +++|++..      ..|+....  +.|..+..  .+.| ++.|++..|.
T Consensus        85 ~v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl  126 (199)
T 2gf0_A           85 LVFSVTSK------QSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDE  126 (199)
T ss_dssp             EEEETTCH------HHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTC
T ss_pred             EEEECcCH------HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccC
Confidence            99999853      22332222  22222222  2555 6778888885

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=89.15  E-value=4  Score=39.03  Aligned_cols=107  Identities=12%  Similarity=0.046  Sum_probs=59.1

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCcc--eEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEe
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGALS--STVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFV  151 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g~--~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~  151 (795)
                      ..+.+-|+|+|.++.+.. +|++.++..- .. +..+.+.  .++......-++.++..+-..-..   ..+-||.+|++
T Consensus        17 ~~~~~ki~ivG~~~vGKS-sL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~i~v   92 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKS-ALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ---FAAWVDAVVFV   92 (184)
T ss_dssp             CCCEEEEEEECCTTSCHH-HHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH---HHHHCSEEEEE
T ss_pred             CCCeeEEEEECCCCCCHH-HHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh---eecCCCEEEEE
Confidence            345566999999998876 6733222211 00 1111121  234444445677778776322222   66789999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT  194 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~  194 (795)
                      +|++..      ..|+.- ..++..+..+    ++| ++.|.+..|.
T Consensus        93 ~d~~~~------~s~~~~-~~~~~~i~~~~~~~~~p-iilv~nK~Dl  131 (184)
T 3ihw_A           93 FSLEDE------ISFQTV-YNYFLRLCSFRNASEVP-MVLVGTQDAI  131 (184)
T ss_dssp             EETTCH------HHHHHH-HHHHHHHHTTSCGGGSC-EEEEEECTTC
T ss_pred             EECcCH------HHHHHH-HHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            999853      224332 2344544443    444 4556676664

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=89.09  E-value=1.5  Score=42.26  Aligned_cols=103  Identities=8%  Similarity=-0.008  Sum_probs=61.3

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhc
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVAD  146 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvAD  146 (795)
                      .+=|+|+|.++.+.. +|    +..|+.....      .|    ..++.......+++|+.+|-. .... .....+-||
T Consensus         8 ~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            8 MFKILIIGNSSVGKT-SF----LFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             EEEEEEECSTTSSHH-HH----HHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             eeEEEEECCCCCCHH-HH----HHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            355899999998876 77    5545432211      12    223333434568889988732 2222 344567799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      .+||++|++..      ..|+. ...++..+..+   +.| ++.|++..|.
T Consensus        83 ~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p-iilv~nK~Dl  125 (203)
T 1zbd_A           83 GFILMYDITNE------ESFNA-VQDWSTQIKTYSWDNAQ-VLLVGNKCDM  125 (203)
T ss_dssp             EEEEEEETTCH------HHHHH-HHHHHHHHHHHSCSSCE-EEEEEECTTC
T ss_pred             EEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence            99999999853      22332 23455555554   343 5677888885

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=88.87  E-value=2.1  Score=48.43  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhh-ccCC---CCC---cceEEEecCceeeEEEEeCCCCC-----------hHHHHHH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQL-SSEG---TGA---LSSTVSSSKYRLRTSVLQAPHGD-----------LVGCMEM  141 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~---~~~---g~~tv~~~r~k~Ritfie~~~~d-----------l~~~LD~  141 (795)
                      .-|+|+|.++.++. +|++.|+..- ....   .+.   ...++..+.  ..++++..+--.           +...+..
T Consensus       244 ~kV~ivG~pnvGKS-SLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          244 LRMVIVGKPNVGKS-TLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             EEEEEECCHHHHTC-HHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECcCCCcHH-HHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            56899999998875 7744444321 0000   011   122333332  468888876211           2346788


Q ss_pred             HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++-||+||+|+|++.+        ...+..+++..+  .+.| ++.|++..|.
T Consensus       321 ~~~aD~vl~VvD~s~~--------~s~~~~~il~~l--~~~p-iivV~NK~DL  362 (482)
T 1xzp_A          321 IEKADIVLFVLDASSP--------LDEEDRKILERI--KNKR-YLVVINKVDV  362 (482)
T ss_dssp             HHHCSEEEEEEETTSC--------CCHHHHHHHHHH--TTSS-EEEEEEECSS
T ss_pred             hhcccEEEEEecCCCC--------CCHHHHHHHHHh--cCCC-EEEEEECccc
Confidence            8999999999999853        334456677665  3665 6777888775

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=88.22  E-value=0.99  Score=42.53  Aligned_cols=108  Identities=12%  Similarity=0.011  Sum_probs=61.3

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHh-hccCC-CCCc---ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEEEe
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQ-LSSEG-TGAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFV  151 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~-~~~~~-~~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVll~  151 (795)
                      ..-|+|+|.++.+.. +|++.|... +.... .+.+   ..++......-+++++..|-. ....+. ...+-||.+|++
T Consensus         5 ~~~i~~~G~~~~GKs-sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   83 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKT-CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC   83 (186)
T ss_dssp             EEEEEEECSTTSSHH-HHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             EEEEEEECCCCCCHH-HHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence            456899999998876 673333321 11111 1112   123334444567778888632 122222 245679999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      +|++.+      ..|+.....++..++.+  +.| ++.|++..|.
T Consensus        84 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  121 (186)
T 1mh1_A           84 FSLVSP------ASFENVRAKWYPEVRHHCPNTP-IILVGTKLDL  121 (186)
T ss_dssp             EETTCH------HHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHH
T ss_pred             EECCCh------hhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccc
Confidence            999853      23444333566666655  666 5666777764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=88.17  E-value=2  Score=41.60  Aligned_cols=104  Identities=10%  Similarity=-0.005  Sum_probs=59.8

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvA  145 (795)
                      .++-|+|+|.++.+.. +|    +..|+....      +.+    ..++..+....+++|+.+|-.. ... .....+-|
T Consensus        19 ~~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   93 (213)
T 3cph_A           19 SIMKILLIGDSGVGKS-CL----LVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA   93 (213)
T ss_dssp             -CEEEEEECSTTSSHH-HH----HHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred             cceEEEEECCCCCCHH-HH----HHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence            3566999999998875 67    444432221      111    2233344444678899887311 111 34556789


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      |.+|+|+|++..      ..|+. ..++|..+..+   +. .++.|++..|.
T Consensus        94 d~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~-piilv~nK~Dl  137 (213)
T 3cph_A           94 MGIILVYDVTDE------RTFTN-IKQWFKTVNEHANDEA-QLLLVGNKSDM  137 (213)
T ss_dssp             SEEEEEEETTCH------HHHHT-HHHHHHHHHHHTTTCS-EEEEEEECTTC
T ss_pred             CEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCC-CEEEEEECCCC
Confidence            999999999853      22322 22444444444   33 35667888775

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=88.11  E-value=1.4  Score=42.63  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=56.4

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhc
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVAD  146 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvAD  146 (795)
                      .++-|+|+|.++.+.. +|    +..|.....      +.+   ...+.......+++|+..+-.+ ... .....+-||
T Consensus        23 ~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           23 RYRKVVILGYRCVGKT-SL----AHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             CEEEEEEEESTTSSHH-HH----HHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CcEEEEEECCCCcCHH-HH----HHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            3556999999998875 77    444433221      112   1112222234667888876322 111 234567799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~  194 (795)
                      .+|+++|++..      ..|+.-. ..+..+..    .+.| ++.|++..|.
T Consensus        98 ~~i~v~d~~~~------~s~~~~~-~~~~~i~~~~~~~~~p-iilv~nK~Dl  141 (201)
T 3oes_A           98 GYVLVYSVTSL------HSFQVIE-SLYQKLHEGHGKTRVP-VVLVGNKADL  141 (201)
T ss_dssp             EEEEEEETTCH------HHHHHHH-HHHHHHHC-----CCC-EEEEEECTTC
T ss_pred             EEEEEEeCCCH------HHHHHHH-HHHHHHHHhcCCCCCC-EEEEEECccC
Confidence            99999999853      2233222 33333332    3555 6677888885

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.05  E-value=1.7  Score=40.74  Aligned_cols=105  Identities=8%  Similarity=0.052  Sum_probs=58.2

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-------CCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAK  143 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aK  143 (795)
                      .+++-|+|+|.++.+.. +|    +..|.....       +.+    ...+.......+++++.+|-. .... .....+
T Consensus         8 ~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~   82 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKT-CL----LVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR   82 (180)
T ss_dssp             SEEEEEEEECSTTSSHH-HH----HHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGG
T ss_pred             CcceEEEEECcCCCCHH-HH----HHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHcc
Confidence            34566999999998876 67    444432221       112    112233444568888888732 2222 334567


Q ss_pred             hhceEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      -||.+|+|+|++..      ..|+. ..++|..+..   .+.| ++.|++..|.
T Consensus        83 ~~d~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p-iilv~nK~Dl  128 (180)
T 2g6b_A           83 DAHALLLLYDVTNK------ASFDN-IQAWLTEIHEYAQHDVA-LMLLGNKVDS  128 (180)
T ss_dssp             GCSEEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCE-EEEEEECCST
T ss_pred             CCCEEEEEEECCCH------HHHHH-HHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence            79999999999853      22322 1234444443   3444 5667888875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=87.52  E-value=3.5  Score=42.39  Aligned_cols=98  Identities=8%  Similarity=0.052  Sum_probs=56.4

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCC-CChHH------HH--
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPH-GDLVG------CM--  139 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~-~dl~~------~L--  139 (795)
                      .+-|+++|+++++++ +|    ++.|++.....          ...++...  ..++.++..|- .++.+      +.  
T Consensus         3 ~~~i~lvG~~g~GKT-TL----~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~   75 (271)
T 3k53_A            3 LKTVALVGNPNVGKT-TI----FNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELIARN   75 (271)
T ss_dssp             CEEEEEEECSSSSHH-HH----HHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHHHHH
T ss_pred             eeEEEEECCCCCCHH-HH----HHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHHHHH
Confidence            466999999998886 77    44444332110          11122222  35688998873 12222      11  


Q ss_pred             -HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796          140 -EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT  194 (795)
Q Consensus       140 -D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~  194 (795)
                       -...-||.||+++|++.+         + ....++..+...| .| ++.|++..|.
T Consensus        76 ~~~~~~~d~vi~v~D~~~~---------~-~~~~~~~~~~~~~~~p-~ilv~NK~Dl  121 (271)
T 3k53_A           76 FILDGNADVIVDIVDSTCL---------M-RNLFLTLELFEMEVKN-IILVLNKFDL  121 (271)
T ss_dssp             HHHTTCCSEEEEEEEGGGH---------H-HHHHHHHHHHHTTCCS-EEEEEECHHH
T ss_pred             hhhccCCcEEEEEecCCcc---------h-hhHHHHHHHHhcCCCC-EEEEEEChhc
Confidence             111349999999999852         2 2334444455566 65 6677888774

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=87.43  E-value=3.4  Score=42.45  Aligned_cols=106  Identities=14%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC------cceEEEecCceeeEEEEeCCCC-Ch----HHHHHHH
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA------LSSTVSSSKYRLRTSVLQAPHG-DL----VGCMEMA  142 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~------g~~tv~~~r~k~Ritfie~~~~-dl----~~~LD~a  142 (795)
                      ..+.-|+|+|.++.++. +|    +..|.....   ..      .+.++.......+++++..|-- +.    ..++...
T Consensus        37 ~~~~~I~vvG~~g~GKS-SL----in~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i  111 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKS-ST----VNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNII  111 (270)
T ss_dssp             CCEEEEEEEESTTSSHH-HH----HHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHH-HH----HHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHH
Confidence            34677999999998876 77    444433221   11      2223322222457999988731 11    1222222


Q ss_pred             h------hhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-CC---CceEEEeccCCc
Q 003796          143 K------VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-GL---PSTAVLIRDLPT  194 (795)
Q Consensus       143 K------vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G~---P~vigVl~~Ld~  194 (795)
                      +      -||.+|+++|.+.       ..|+....+++..|... |-   ..++.|+++.|.
T Consensus       112 ~~~~~~~~~d~il~v~~~d~-------~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl  166 (270)
T 1h65_A          112 KSFLLDKTIDVLLYVDRLDA-------YRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF  166 (270)
T ss_dssp             HHHTTTCEECEEEEEEESSC-------CCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred             HHHhhcCCCCEEEEEEeCCC-------CcCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence            2      4899999977653       12665666777777544 53   367888998885

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=87.04  E-value=2.4  Score=41.82  Aligned_cols=103  Identities=15%  Similarity=0.071  Sum_probs=58.0

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhc
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVAD  146 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvAD  146 (795)
                      .+-|+|+|.++.+.. +|    +..|......      .|    ..++..+....+++|+..+-. .... .....+-||
T Consensus        13 ~~ki~v~G~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   87 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKS-NL----LSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV   87 (223)
T ss_dssp             EEEEEEESCTTSSHH-HH----HHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred             eeEEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence            455899999998876 67    4444332211      11    233444444468888887621 1222 233457799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      .+|||+|++..      ..|+. ..++|..+..+   +.| ++.|++..|.
T Consensus        88 ~vilV~D~~~~------~s~~~-~~~~l~~i~~~~~~~~p-iilv~nK~Dl  130 (223)
T 3cpj_B           88 GALIVYDISKS------SSYEN-CNHWLSELRENADDNVA-VGLIGNKSDL  130 (223)
T ss_dssp             EEEEEEC-CCH------HHHHH-HHHHHHHHHHHCC--CE-EEEEECCGGG
T ss_pred             EEEEEEeCCCH------HHHHH-HHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence            99999999853      22332 23445555554   443 5567788775

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=86.92  E-value=1.1  Score=42.05  Aligned_cols=105  Identities=13%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--cce-------EEEecCceeeEEEEeCCC-CChHHH-HHHHhhhc
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSS-------TVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVAD  146 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g~~-------tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvAD  146 (795)
                      .+.-|+|+|.++.+.. +|    +..|+......  .|.       ++......-+++++.+|- .....+ ....+-||
T Consensus         7 ~~~ki~v~G~~~~GKs-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   81 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKT-CL----LISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (182)
T ss_dssp             CCCEEEEECSTTSSHH-HH----HHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred             ceEEEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence            4566999999998876 67    44443222111  110       111222234566887752 122222 23456799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      .+|+++|++..      ..|+.....++..+..+  +.| ++.|++..|.
T Consensus        82 ~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  124 (182)
T 3bwd_D           82 VFILAFSLISK------ASYENVSKKWIPELKHYAPGVP-IVLVGTKLDL  124 (182)
T ss_dssp             EEEEEEETTCH------HHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHH
T ss_pred             EEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEechhh
Confidence            99999999853      23443333466666654  555 5666777774

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=86.92  E-value=1.6  Score=41.31  Aligned_cols=104  Identities=9%  Similarity=-0.020  Sum_probs=58.9

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvA  145 (795)
                      .++-|+|+|+++.+.. +|    ++.|.....      +.+    ..++..+....+++|+.+|-. +..+ .....+-|
T Consensus         9 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   83 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKS-CL----LHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA   83 (186)
T ss_dssp             EEEEEEEEESTTSSHH-HH----HHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred             cceEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcC
Confidence            3456899999998886 77    444432211      111    222333444468889988732 2233 33446779


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      |.+|+++|++..      ..|+.. ..++..+..   .+.| ++.|++..|.
T Consensus        84 d~~i~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~~p-iilv~nK~Dl  127 (186)
T 2bme_A           84 AGALLVYDITSR------ETYNAL-TNWLTDARMLASQNIV-IILCGNKKDL  127 (186)
T ss_dssp             SEEEEEEETTCH------HHHHTH-HHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred             CEEEEEEECcCH------HHHHHH-HHHHHHHHHhcCCCCc-EEEEEECccc
Confidence            999999999853      223221 233333332   3444 5667787775

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=86.51  E-value=2.8  Score=39.25  Aligned_cols=107  Identities=17%  Similarity=0.080  Sum_probs=58.1

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHh-hccCCCCCcc---eEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEee
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQ-LSSEGTGALS---STVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVA  152 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~g~---~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~i  152 (795)
                      .+++=|+|+|.++.+.. +|++.++.. +..+..+.|.   .++..+....++.++..+ ..-.  -...+-||.+|||+
T Consensus         5 ~~~~ki~~vG~~~vGKT-sli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~-G~~~--~~~~~~~d~~ilv~   80 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKS-SLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA-GAPD--AKFSGWADAVIFVF   80 (178)
T ss_dssp             CCEEEEEEECCGGGCHH-HHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECS-SSCC--HHHHHHCSEEEEEE
T ss_pred             CCceEEEEECCCCCCHH-HHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECC-CCch--hHHHHhCCEEEEEE
Confidence            34566999999998876 773333321 1111111121   223334445678888886 3322  24567799999999


Q ss_pred             eCCCccccccccccChHHH--HHHHHHHhc---CCCceEEEeccCCc
Q 003796          153 SASSFSEESMSYYIDSFGN--QCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~--e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      |++..      ..|+.-..  +.|..+..+   +.| ++.|.+..|.
T Consensus        81 D~~~~------~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl  120 (178)
T 2iwr_A           81 SLEDE------NSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRI  120 (178)
T ss_dssp             ETTCH------HHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTC
T ss_pred             ECcCH------HHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            99843      22332211  123333333   444 5566777664

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=86.49  E-value=2.2  Score=41.80  Aligned_cols=107  Identities=10%  Similarity=0.078  Sum_probs=58.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhcc--CCCCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEEE
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSS--EGTGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVAF  150 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~--~~~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVll  150 (795)
                      ++-|+|+|.++.+.. +|++.|+.....  ...+.|    ..++.......+++|+.++-.. +.. ....++-||.+|+
T Consensus        26 ~~ki~lvG~~~vGKS-sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKT-CLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL  104 (201)
T ss_dssp             EEEEEEEESTTSSHH-HHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             ceEEEEECcCCCCHH-HHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            456899999998876 773333322110  111112    1233344444578888886322 333 3345678999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      ++|++..      ..|+.- .+.+..++..   +.| ++.|++..|.
T Consensus       105 v~D~~~~------~s~~~~-~~~~~~i~~~~~~~~p-iilv~NK~Dl  143 (201)
T 2ew1_A          105 TYDITCE------ESFRCL-PEWLREIEQYASNKVI-TVLVGNKIDL  143 (201)
T ss_dssp             EEETTCH------HHHHTH-HHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred             EEECCCH------HHHHHH-HHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence            9999853      223221 2334444433   333 5566787775

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=86.41  E-value=1.6  Score=47.98  Aligned_cols=69  Identities=13%  Similarity=0.273  Sum_probs=46.8

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC--------cce--EEEecCceeeEEEEeCCC---------CChHHHHHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSS--TVSSSKYRLRTSVLQAPH---------GDLVGCMEM  141 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~--tv~~~r~k~Ritfie~~~---------~dl~~~LD~  141 (795)
                      -|++||+|+.+.+ +|    ++.+|+.....        .|+  .+..+  -.+++|+..|-         .-.+..|..
T Consensus        74 ~V~ivG~PNvGKS-TL----~n~Lt~~~~~v~~~pftT~~~~~g~~~~~--~~~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           74 SVGFVGFPSVGKS-TL----LSKLTGTESEAAEYEFTTLVTVPGVIRYK--GAKIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             EEEEECCCCHHHH-HH----HHHHHSBCCCGGGTCSSCCCEEEEEEEET--TEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             eEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCceeeeeeEEEEeC--CcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            3899999998775 67    56666544221        121  12223  36888888762         112678999


Q ss_pred             HhhhceEEEeeeCCC
Q 003796          142 AKVADLVAFVASASS  156 (795)
Q Consensus       142 aKvADlVll~idas~  156 (795)
                      ++-||+||+|+|++.
T Consensus       147 i~~ad~il~vvD~~~  161 (376)
T 4a9a_A          147 ARTCNLLFIILDVNK  161 (376)
T ss_dssp             HHHCSEEEEEEETTS
T ss_pred             HHhcCccccccccCc
Confidence            999999999999984

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=86.22  E-value=5.2  Score=37.73  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=58.7

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----c--eEEEecCceeeEEEEeCCC-CC---------hH
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----S--STVSSSKYRLRTSVLQAPH-GD---------LV  136 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~--~tv~~~r~k~Ritfie~~~-~d---------l~  136 (795)
                      +..-|+|+|.++.+.. +|    ++.|+....   ..  |    .  -++....  ..+.++..+- .+         +.
T Consensus         3 ~~~ki~ivG~~g~GKS-tL----l~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~   75 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKS-SL----LNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIE   75 (172)
T ss_dssp             -CEEEEEEESTTSSHH-HH----HHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHH-HH----HHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHH
Confidence            4567999999998886 77    555544321   11  1    1  1222332  4577787652 11         22


Q ss_pred             HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      .++...+-||.+|+++|++..      ..|+  ..+++..+..+   +.| ++.|++..|.
T Consensus        76 ~~~~~~~~ad~~i~v~D~~~~------~s~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  127 (172)
T 2gj8_A           76 RAWQEIEQADRVLFMVDGTTT------DAVD--PAEIWPEFIARLPAKLP-ITVVRNKADI  127 (172)
T ss_dssp             HHHHHHHTCSEEEEEEETTTC------CCCS--HHHHCHHHHHHSCTTCC-EEEEEECHHH
T ss_pred             HHHHHHHhCCEEEEEEECCCC------CCHH--HHHHHHHHHHhcccCCC-EEEEEECccC
Confidence            234567889999999999854      2244  23455555544   455 5667777664

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=85.99  E-value=1.7  Score=40.96  Aligned_cols=105  Identities=11%  Similarity=0.021  Sum_probs=50.2

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCCC-C-----c----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-A-----L----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVA  145 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-~-----g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvA  145 (795)
                      .++-|+|+|.++.+.. +|    +..|+..... .     |    ..++..+....+++|+.+|-. ....+ ....+-|
T Consensus         7 ~~~ki~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   81 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKT-CV----LFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   81 (183)
T ss_dssp             EEEEEEEECCCCC---------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC
T ss_pred             CceEEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcC
Confidence            3566999999998875 66    4444332211 1     2    223334444578889988731 22222 2345679


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      |.+|+|+|++..      ..|+. ..++|..+..+..  ..++.|++..|.
T Consensus        82 d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl  125 (183)
T 2fu5_C           82 MGIMLVYDITNE------KSFDN-IRNWIRNIEEHASADVEKMILGNKCDV  125 (183)
T ss_dssp             SEEEEEEETTCH------HHHHH-HHHHHHHHHHHSCTTCEEEEEEEC--C
T ss_pred             CEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCCEEEEEECccC
Confidence            999999999853      22332 2345666665522  235666787775

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=85.74  E-value=3.2  Score=39.09  Aligned_cols=104  Identities=10%  Similarity=-0.080  Sum_probs=60.2

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc-----eEEEecCc---------eeeEEEEeCCCC-ChH
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS-----STVSSSKY---------RLRTSVLQAPHG-DLV  136 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~-----~tv~~~r~---------k~Ritfie~~~~-dl~  136 (795)
                      .++-|+|+|.++.+.. +|    +..|.....      +.|.     .++.....         ..+++++..|-. .+.
T Consensus        10 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   84 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKT-SV----LYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR   84 (195)
T ss_dssp             EEEEEEEECSTTSSHH-HH----HHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred             eeEEEEEECCCCCCHH-HH----HHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence            3566999999998876 67    444432211      1122     12222222         458888888632 233


Q ss_pred             H-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796          137 G-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT  194 (795)
Q Consensus       137 ~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~  194 (795)
                      . .....+-||.+|||+|++..      ..|+. ..++|..+..+    +.| ++.|++..|.
T Consensus        85 ~~~~~~~~~~d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~~p-iilv~nK~Dl  139 (195)
T 3bc1_A           85 SLTTAFFRDAMGFLLLFDLTNE------QSFLN-VRNWISQLQMHAYSENPD-IVLCGNKSDL  139 (195)
T ss_dssp             HHHHHTTTTCSEEEEEEETTCH------HHHHT-HHHHHHHHHHHSSSSSCC-EEEEEECTTC
T ss_pred             HHHHHHHcCCCEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence            3 34456789999999999853      22322 23455555543    444 6677888885

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=85.47  E-value=4.6  Score=39.47  Aligned_cols=105  Identities=11%  Similarity=0.013  Sum_probs=60.4

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhc
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVAD  146 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvAD  146 (795)
                      ..+-|+|+|.++.+.. +|    +..|+....      +.+.   .++.......++.|+.++-. ....+. ...+-||
T Consensus        27 ~~~ki~vvG~~~vGKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  101 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKT-AL----LHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD  101 (205)
T ss_dssp             CEEEEEEEESTTSSHH-HH----HHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             eeeEEEEECCCCCCHH-HH----HHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence            3566999999998876 77    444433221      1121   12333434567888888621 122222 2356799


Q ss_pred             eEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      .+||++|++..      ..|+.....++..++.+  +.| ++.|++..|.
T Consensus       102 ~~ilv~D~~~~------~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl  144 (205)
T 1gwn_A          102 AVLICFDISRP------ETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDL  144 (205)
T ss_dssp             EEEEEEETTCH------HHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred             EEEEEEECCCH------HHHHHHHHHHHHHHHHHCCCCC-EEEEEechhh
Confidence            99999999853      23443323445555543  433 5667788775

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=85.15  E-value=2.3  Score=39.71  Aligned_cols=106  Identities=10%  Similarity=0.102  Sum_probs=55.8

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEec-CceeeEEEEeCCCC-ChHH-HHHHHh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSS-KYRLRTSVLQAPHG-DLVG-CMEMAK  143 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~-r~k~Ritfie~~~~-dl~~-~LD~aK  143 (795)
                      ..++-|+|+|+++.+.. +|    +..|.....      +.|    ..++... ....+++++.+|-. .... .....+
T Consensus         6 ~~~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKT-SL----MHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR   80 (182)
T ss_dssp             -CEEEEEEECCTTSSHH-HH----HHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred             CceEEEEEECCCCCCHH-HH----HHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence            34567999999998876 67    444432221      111    2223322 23457888888731 1222 233457


Q ss_pred             hhceEEEeeeCCCccccccccccCh---HHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          144 VADLVAFVASASSFSEESMSYYIDS---FGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       144 vADlVll~idas~g~~~~~~~~fe~---eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      -||.+|+++|++..      ..|+.   +-.+++..+..   .+.| ++.|++..|.
T Consensus        81 ~~d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  130 (182)
T 1ky3_A           81 GADCCVLVYDVTNA------SSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDA  130 (182)
T ss_dssp             TCCEEEEEEETTCH------HHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTS
T ss_pred             cCCEEEEEEECCCh------HHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCcc
Confidence            79999999999853      22322   22233333221   3444 5667888775

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=84.99  E-value=4.2  Score=41.61  Aligned_cols=105  Identities=16%  Similarity=0.252  Sum_probs=61.7

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC------cceEEEecCceeeEEEEeCCCCC--h----HHHHHH
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA------LSSTVSSSKYRLRTSVLQAPHGD--L----VGCMEM  141 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~------g~~tv~~~r~k~Ritfie~~~~d--l----~~~LD~  141 (795)
                      ..++-|+|+|.++.+.. +|    +..|+....   ..      ...+....--..+++++..| .-  .    ...+..
T Consensus        34 ~~~~~I~lvG~~g~GKS-SL----in~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTp-G~~~~~~~~~~~~~~  107 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKS-ST----VNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTP-GLVEAGYVNHQALEL  107 (262)
T ss_dssp             CCEEEEEEEECTTSSHH-HH----HHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECC-CSEETTEECHHHHHH
T ss_pred             CCCcEEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECC-CCCCcccchHHHHHH
Confidence            45778999999998886 77    444433321   11      22222211123589999987 42  1    122222


Q ss_pred             Hh------hhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-C---CCceEEEeccCCc
Q 003796          142 AK------VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-G---LPSTAVLIRDLPT  194 (795)
Q Consensus       142 aK------vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G---~P~vigVl~~Ld~  194 (795)
                      .+      -+|.+|+++|...       ..|+....+++..|+.. |   ...++.|+++.|.
T Consensus       108 i~~~l~~~~~~~il~V~~~d~-------~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl  163 (262)
T 3def_A          108 IKGFLVNRTIDVLLYVDRLDV-------YAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF  163 (262)
T ss_dssp             HHHHTTTCEECEEEEEEESSC-------SCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred             HHHHHhcCCCCEEEEEEcCCC-------CCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence            22      5799999987653       23666666677666654 3   2356778888774

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=84.69  E-value=2.8  Score=45.11  Aligned_cols=65  Identities=8%  Similarity=-0.010  Sum_probs=43.0

Q ss_pred             eeEEEEeCCC-CC--------------hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEE
Q 003796          123 LRTSVLQAPH-GD--------------LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAV  187 (795)
Q Consensus       123 ~Ritfie~~~-~d--------------l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vig  187 (795)
                      ..++++..|- .+              ..-+...++-||.|||+++++..      .....+..+++..+...|.| +|+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~------~~~~~~~~~l~~~~~~~~~~-~i~  208 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ------DLATSDAIKISREVDPSGDR-TFG  208 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS------CGGGCHHHHHHHHSCTTCTT-EEE
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC------CcCCHHHHHHHHHhcccCCC-EEE
Confidence            4678888762 12              22344556779999999986521      12334557777888778876 678


Q ss_pred             EeccCCc
Q 003796          188 LIRDLPT  194 (795)
Q Consensus       188 Vl~~Ld~  194 (795)
                      |+|..|.
T Consensus       209 V~nK~Dl  215 (360)
T 3t34_A          209 VLTKIDL  215 (360)
T ss_dssp             EEECGGG
T ss_pred             EEeCCcc
Confidence            8898885

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=84.49  E-value=5.3  Score=43.07  Aligned_cols=125  Identities=13%  Similarity=0.114  Sum_probs=68.5

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC-------CC-cce--EEEecCceeeEEEEeCCCCC----------hHHHHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GA-LSS--TVSSSKYRLRTSVLQAPHGD----------LVGCMEM  141 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~-g~~--tv~~~r~k~Ritfie~~~~d----------l~~~LD~  141 (795)
                      |+|+|.++.+++ +|    +..|+....       +. .|.  .+..+. ..+++++..| .-          ....|..
T Consensus       161 V~lvG~~nvGKS-TL----ln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtP-G~i~~a~~~~~l~~~fl~~  233 (342)
T 1lnz_A          161 VGLVGFPSVGKS-TL----LSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLP-GLIEGAHQGVGLGHQFLRH  233 (342)
T ss_dssp             EEEESSTTSSHH-HH----HHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHH-HHHHHTTCTTTTHHHHHHH
T ss_pred             eeeeCCCCCCHH-HH----HHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCC-CCcccccccchhHHHHHHH
Confidence            899999998876 77    666654321       11 221  222221 2578888776 31          1445666


Q ss_pred             HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCC
Q 003796          142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPE  216 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~  216 (795)
                      +.-||++|+|+|++.. +.  ...++ .-..++..|...     +.| ++.|++..|.  -......+.++..+..    
T Consensus       234 i~~~d~ll~VvD~s~~-~~--~~~~~-~~~~~~~eL~~~~~~l~~~p-~ilV~NK~Dl--~~~~e~~~~l~~~l~~----  302 (342)
T 1lnz_A          234 IERTRVIVHVIDMSGL-EG--RDPYD-DYLTINQELSEYNLRLTERP-QIIVANKMDM--PEAAENLEAFKEKLTD----  302 (342)
T ss_dssp             HHHCCEEEEEEESSCS-SC--CCHHH-HHHHHHHHHHHSCSSTTTSC-BCBEEECTTS--TTHHHHHHHHHHHCCS----
T ss_pred             HHhccEEEEEEECCcc-cc--cChHH-HHHHHHHHHHHhhhhhcCCC-EEEEEECccC--CCCHHHHHHHHHHhhc----
Confidence            6679999999999741 00  01122 223455666653     455 5667888886  1112222334444332    


Q ss_pred             CCeeEEeC
Q 003796          217 DCKFYAAD  224 (795)
Q Consensus       217 ~~Klf~l~  224 (795)
                      ...+|.+|
T Consensus       303 ~~~v~~iS  310 (342)
T 1lnz_A          303 DYPVFPIS  310 (342)
T ss_dssp             CCCBCCCS
T ss_pred             CCCEEEEE
Confidence            24566666

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=84.43  E-value=12  Score=35.08  Aligned_cols=78  Identities=14%  Similarity=0.120  Sum_probs=44.2

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCC-CC------CcceEE----------EecCceeeEEEEeCCC-CChHHHH
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG-TG------ALSSTV----------SSSKYRLRTSVLQAPH-GDLVGCM  139 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~~------~g~~tv----------~~~r~k~Ritfie~~~-~dl~~~L  139 (795)
                      ..+=|+|+|.++.+.. +|++.+...+.... ..      .-.-|+          .......+++++..+- ..+..+.
T Consensus        13 ~~~ki~vvG~~~~GKs-sL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   91 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKT-TNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR   91 (198)
T ss_dssp             EEEEEEEECSTTSSHH-HHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred             cccEEEEECCCCCCHH-HHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence            3455999999998876 67333232221110 00      000111          1222345788888862 2344444


Q ss_pred             H-HHhhhceEEEeeeCCC
Q 003796          140 E-MAKVADLVAFVASASS  156 (795)
Q Consensus       140 D-~aKvADlVll~idas~  156 (795)
                      . ..+-||.+|||+|++.
T Consensus        92 ~~~~~~~d~~i~v~D~~~  109 (198)
T 3t1o_A           92 KLILRGVDGIVFVADSAP  109 (198)
T ss_dssp             HHHTTTCCEEEEEEECCG
T ss_pred             HHHHhcCCEEEEEEECCc
Confidence            3 5678999999999984

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=84.00  E-value=2.9  Score=41.09  Aligned_cols=110  Identities=8%  Similarity=0.017  Sum_probs=60.8

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHH-Hhhcc-CCCCC----cceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhce
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLL-RQLSS-EGTGA----LSSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADL  147 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lv-k~~~~-~~~~~----g~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADl  147 (795)
                      ....+-|+|+|.++.+.. +|++.++ ..+.. +..+.    ...++.......+++|+..+-.. ... .....+-||.
T Consensus        12 ~~~~~ki~v~G~~~~GKS-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKT-TFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCEEEEEEEECTTSSHH-HHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             cccceEEEEECCCCCCHH-HHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            345566999999998875 6633211 11111 11111    23344444445678888876211 111 2345667999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      +|+|+|++..      ..|+.- ..++..+..+  +.| ++.|++..|.
T Consensus        91 ~i~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~p-~ilv~nK~Dl  131 (221)
T 3gj0_A           91 AIIMFDVTSR------VTYKNV-PNWHRDLVRVCENIP-IVLCGNKVDI  131 (221)
T ss_dssp             EEEEEETTCH------HHHHTH-HHHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred             EEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCC-EEEEEECCcc
Confidence            9999999853      223322 2334444333  555 5667888775

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=83.56  E-value=3.4  Score=46.54  Aligned_cols=137  Identities=10%  Similarity=0.044  Sum_probs=72.5

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhcc-CC-C--CC---cceEEEecCceeeEEEEeCCC-CCh---------HHHHHH
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSS-EG-T--GA---LSSTVSSSKYRLRTSVLQAPH-GDL---------VGCMEM  141 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~-~--~~---g~~tv~~~r~k~Ritfie~~~-~dl---------~~~LD~  141 (795)
                      +.-|+|+|.++.++. +|++.|+..-.. .. .  +.   ...++....  ..++++..+- .+.         ...+..
T Consensus       224 ~~kV~ivG~~nvGKS-SLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          224 GLKVAIVGRPNVGKS-SLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             CEEEEEEECTTSSHH-HHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCEEEEEcCCCCCHH-HHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            345999999998876 774444432110 11 0  01   112233332  4666766542 122         223445


Q ss_pred             HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeE
Q 003796          142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFY  221 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf  221 (795)
                      ++-||+||+|+|++.+        +..+..+++..+..   ..++.|++..|......  ..     .+ ..+..+..++
T Consensus       301 ~~~aD~vl~VvD~s~~--------~~~~~~~i~~~l~~---~piivV~NK~Dl~~~~~--~~-----~~-~~~~~~~~~i  361 (462)
T 3geh_A          301 ANTADLVLLTIDAATG--------WTTGDQEIYEQVKH---RPLILVMNKIDLVEKQL--IT-----SL-EYPENITQIV  361 (462)
T ss_dssp             CCSCSEEEEEEETTTC--------SCHHHHHHHHHHTT---SCEEEEEECTTSSCGGG--ST-----TC-CCCTTCCCEE
T ss_pred             hhcCCEEEEEeccCCC--------CCHHHHHHHHhccC---CcEEEEEECCCCCcchh--hH-----HH-HHhccCCcEE
Confidence            6779999999999854        56666788887754   35778889888511111  10     11 1222356788


Q ss_pred             EeCCH--HHHHHHHHHHh
Q 003796          222 AADTK--DELHKFLWLFK  237 (795)
Q Consensus       222 ~l~~~--~E~~nL~R~Is  237 (795)
                      .+|..  .-+..|...|.
T Consensus       362 ~iSAktg~Gi~eL~~~i~  379 (462)
T 3geh_A          362 HTAAAQKQGIDSLETAIL  379 (462)
T ss_dssp             EEBTTTTBSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            88842  23444444443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=83.39  E-value=18  Score=38.78  Aligned_cols=33  Identities=9%  Similarity=0.130  Sum_probs=22.2

Q ss_pred             eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796          124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF  157 (795)
Q Consensus       124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g  157 (795)
                      .+.|++.+ .=..+-..+...||++|+|+|++.|
T Consensus       168 ~~iliDT~-Gi~~~~~~l~~~~d~vl~V~d~~~~  200 (349)
T 2www_A          168 DIILIETV-GVGQSEFAVADMVDMFVLLLPPAGG  200 (349)
T ss_dssp             SEEEEECC-CC--CHHHHHTTCSEEEEEECCC--
T ss_pred             CEEEEECC-CcchhhhhHHhhCCEEEEEEcCCcc
Confidence            56777775 4222345668899999999999854

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=82.97  E-value=3.1  Score=40.44  Aligned_cols=110  Identities=13%  Similarity=0.012  Sum_probs=61.6

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc---ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEE
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVA  149 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVl  149 (795)
                      ...+-|+|+|.++.+.. +|++.++..- .. +..+.+   ..++......-.+.++..+- .....+. ...+-||.+|
T Consensus         7 ~~~~ki~i~G~~~~GKT-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKT-CMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHH-HHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHH-HHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            34566999999998876 6733333211 11 111112   12233343446788887752 1222232 2467799999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      ||+|++..      ..|+..-..++..++.+  +.| ++.|++..|.
T Consensus        86 lv~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  125 (212)
T 2j0v_A           86 LAFSLISK------ASYENVLKKWMPELRRFAPNVP-IVLVGTKLDL  125 (212)
T ss_dssp             EEEETTCH------HHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHH
T ss_pred             EEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHh
Confidence            99999853      23444334566677665  555 5566777664

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=82.81  E-value=4.9  Score=48.71  Aligned_cols=64  Identities=11%  Similarity=0.087  Sum_probs=48.4

Q ss_pred             eeeEEEEeCCC-CChH-HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          122 RLRTSVLQAPH-GDLV-GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       122 k~Ritfie~~~-~dl~-~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ..++.++.+|- .|+. .+..+.+.||.+|+|+|++.|        ....+..++..+...|+|.++ |++.+|.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g--------~~~qt~~~~~~~~~~~~p~il-viNK~D~  162 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG--------VCVQTETVLRQALGERIKPVV-VINKVDR  162 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCEEEE-EEECHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCeEE-EEECCCc
Confidence            46889998873 3443 456677999999999999965        666778888888888999654 6666553

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=82.71  E-value=1.9  Score=46.42  Aligned_cols=62  Identities=19%  Similarity=0.200  Sum_probs=41.6

Q ss_pred             eeEEEEeCCCC---------------ChHHHHH-HH-hhhceEEEeeeCCCccccccccccCh-HHHHHHHHHHhcCCCc
Q 003796          123 LRTSVLQAPHG---------------DLVGCME-MA-KVADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSLGLPS  184 (795)
Q Consensus       123 ~Ritfie~~~~---------------dl~~~LD-~a-KvADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aqG~P~  184 (795)
                      ..++|+..| .               .+..|+. .+ ..+|+||+++|++.+        +.. +-.+++..+...|.| 
T Consensus       130 ~~l~lvDTP-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--------~~~~~~~~i~~~~~~~~~~-  199 (353)
T 2x2e_A          130 LNLTLVDLP-GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------LANSDALKVAKEVDPQGQR-  199 (353)
T ss_dssp             CSEEEEECC-CBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--------GGGCHHHHHHHHHCTTCTT-
T ss_pred             CCcEEEECC-CCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--------cchhHHHHHHHHhCcCCCc-
Confidence            578999887 4               2333443 22 567888999998753        322 234578888778876 


Q ss_pred             eEEEeccCCc
Q 003796          185 TAVLIRDLPT  194 (795)
Q Consensus       185 vigVl~~Ld~  194 (795)
                      +++|++..|.
T Consensus       200 ~i~V~NK~Dl  209 (353)
T 2x2e_A          200 TIGVITKLDL  209 (353)
T ss_dssp             EEEEEECGGG
T ss_pred             eEEEeccccc
Confidence            6778998885

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=82.19  E-value=2.2  Score=40.86  Aligned_cols=106  Identities=9%  Similarity=0.019  Sum_probs=61.2

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC------Ccc---eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------ALS---STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVA  145 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g~---~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvA  145 (795)
                      ..++-|+|+|.++.+.. +|    +..|+.....      .+.   ..+......-.++++..+-. ....+. ...+-|
T Consensus        21 ~~~~ki~~vG~~~~GKS-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   95 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKT-CL----LLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS   95 (194)
T ss_dssp             CEEEEEEEECSTTSSHH-HH----HHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             ceeeEEEEECcCCCCHH-HH----HHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence            34567999999998875 77    4444332221      111   12223333456788887621 222222 245679


Q ss_pred             ceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      |.+|+++|++..      ..|+.-...++..++.+  +.| ++.|++..|.
T Consensus        96 d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  139 (194)
T 3reg_A           96 DVVLLCFAVNNR------TSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDL  139 (194)
T ss_dssp             SEEEEEEETTCH------HHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGG
T ss_pred             cEEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence            999999999853      33544345566666654  344 5566777664

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=81.93  E-value=2.1  Score=41.30  Aligned_cols=105  Identities=9%  Similarity=0.024  Sum_probs=59.6

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhh
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKV  144 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKv  144 (795)
                      ..++-|+|+|.++.++. +|    +..|.......          ...++.......+++|+.++-.. ... .....+-
T Consensus        31 ~~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~  105 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKS-CL----LLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG  105 (199)
T ss_dssp             SEEEEEEEECCTTSCCT-TT----TTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred             CcceEEEEECCCCCCHH-HH----HHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence            34567999999998876 66    66665433221          22334444445678888886311 111 2335677


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      ||.+|||+|++..      ..|+. ..+++..+...   +.| ++.|++..|.
T Consensus       106 ~d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p-~ilv~nK~Dl  150 (199)
T 3l0i_B          106 AHGIIVVYDVTDQ------ESFNN-VKQWLQEIDRYASENVN-KLLVGNKCDL  150 (199)
T ss_dssp             CSEEEECC-CCCS------HHHHH-HHHHHHHHHSCC-CCSE-EEEC-CCSSC
T ss_pred             CCEEEEEEECCCH------HHHHH-HHHHHHHHHHhccCCCC-EEEEEECccC
Confidence            9999999999853      22332 23455555554   333 4556787775

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=81.88  E-value=6.6  Score=40.75  Aligned_cols=104  Identities=13%  Similarity=0.007  Sum_probs=58.6

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhce
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADL  147 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADl  147 (795)
                      +.-|+|+|.++.++. +|    +..|+....      +.+   ..++......-.+.|+.++-. ....+. ...+-||.
T Consensus       155 ~~~i~i~G~~~~GKs-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  229 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKT-CL----LISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  229 (332)
T ss_dssp             CEEEEEEESTTSSHH-HH----HHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSE
T ss_pred             eeEEEEECCCCCChH-HH----HHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCE
Confidence            566899999998875 67    444432211      111   122333434456668887631 122222 24567999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      +|+|+|++..      ..|+.....++..+..+  +.| ++.|++..|.
T Consensus       230 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  271 (332)
T 2wkq_A          230 FLICFSLVSP------ASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDL  271 (332)
T ss_dssp             EEEEEETTCH------HHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHH
T ss_pred             EEEEEeCCCH------HHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhc
Confidence            9999999853      23433333455566555  555 4566777664

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=81.54  E-value=2.3  Score=41.91  Aligned_cols=104  Identities=12%  Similarity=0.030  Sum_probs=59.1

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhce
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADL  147 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADl  147 (795)
                      .+=|+|+|.++.+.. +|    +..|+....      +.+.   .++.......++.++..+-. ....+.. ..+-||.
T Consensus        27 ~~ki~vvG~~~vGKS-sL----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKT-AM----LQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             CEEEEEECSTTSSHH-HH----HHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             eEEEEEECcCCCCHH-HH----HHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            455999999998876 67    444433221      1111   12233334567888887621 2222222 3567999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      +|||+|++..      ..|+..-..++..++.+  +.| ++.|++..|.
T Consensus       102 ~i~v~d~~~~------~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl  143 (214)
T 3q3j_B          102 VLLCFDISRP------ETVDSALKKWRTEILDYCPSTR-VLLIGCKTDL  143 (214)
T ss_dssp             EEEEEETTCT------HHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGG
T ss_pred             EEEEEECcCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence            9999999853      33444345566666665  444 4555677764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=81.54  E-value=15  Score=35.35  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=57.0

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCC------CCC----cceEEEecCceeeEEEEeCCCC-ChHH-HHH-HHhh
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGA----LSSTVSSSKYRLRTSVLQAPHG-DLVG-CME-MAKV  144 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~----g~~tv~~~r~k~Ritfie~~~~-dl~~-~LD-~aKv  144 (795)
                      ..+-|+|+|.++.++. +|    ++.|++..      .+.    ...++......-++.++..+-. .... +.. ..+-
T Consensus        22 ~~~ki~vvG~~~vGKS-sL----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKS-TL----AGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             CEEEEEEECSTTSSHH-HH----HHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHH-HH----HHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            3466999999998886 77    66664211      111    1123333444456666676522 2333 322 3566


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT  194 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~  194 (795)
                      ||.+||++|.+..      ..|+.-. +.+..+..    .++| ++.|.+..|.
T Consensus        97 ~d~~ilv~d~~~~------~s~~~~~-~~~~~i~~~~~~~~~p-iilv~nK~Dl  142 (195)
T 3cbq_A           97 GDAFLIVFSVTDR------RSFSKVP-ETLLRLRAGRPHHDLP-VILVGNKSDL  142 (195)
T ss_dssp             CSEEEEEEETTCH------HHHHTHH-HHHHHHHHHSTTSCCC-EEEEEECTTC
T ss_pred             CCEEEEEEECCCH------HHHHHHH-HHHHHHHHhcCCCCCC-EEEEeechhc
Confidence            9999999999742      2233222 23333333    3555 5566777775

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=81.25  E-value=11  Score=42.35  Aligned_cols=99  Identities=10%  Similarity=-0.002  Sum_probs=53.1

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c------ceEEEecCceeeEEEEeCCC-CChHH---------H
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L------SSTVSSSKYRLRTSVLQAPH-GDLVG---------C  138 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g------~~tv~~~r~k~Ritfie~~~-~dl~~---------~  138 (795)
                      +-|+|+|.++.++. +|    +..|++.+.   +.  |      ..++....  ..++|+..+- .+..+         .
T Consensus       234 ~kV~ivG~~nvGKS-SL----ln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~  306 (476)
T 3gee_A          234 VSTVIAGKPNAGKS-TL----LNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRS  306 (476)
T ss_dssp             EEEEEECCTTSSHH-HH----HHHCC------------------CEEEEETT--EEEEEEC-------------------
T ss_pred             CEEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHH
Confidence            44999999998876 77    555544321   11  1      11223332  4677777652 22222         2


Q ss_pred             HHHHhhhceEEEeeeCCCccccccccccCh--HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          139 MEMAKVADLVAFVASASSFSEESMSYYIDS--FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       139 LD~aKvADlVll~idas~g~~~~~~~~fe~--eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +..++-||+||+|+|++.+      ..++.  +..+++..+.  +.| ++.|++..|.
T Consensus       307 ~~~~~~aD~vl~VvD~s~~------~s~~~~~~~~~~l~~l~--~~p-iIvV~NK~Dl  355 (476)
T 3gee_A          307 RMKMAEADLILYLLDLGTE------RLDDELTEIRELKAAHP--AAK-FLTVANKLDR  355 (476)
T ss_dssp             -CCCSSCSEEEEEEETTTC------SSGGGHHHHHHHHHHCT--TSE-EEEEEECTTS
T ss_pred             HhhcccCCEEEEEEECCCC------cchhhhHHHHHHHHhcC--CCC-EEEEEECcCC
Confidence            3446779999999999964      11211  4455565554  444 6777888885

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=80.63  E-value=7.4  Score=41.62  Aligned_cols=34  Identities=15%  Similarity=0.083  Sum_probs=23.6

Q ss_pred             eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796          123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF  157 (795)
Q Consensus       123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g  157 (795)
                      ..+.|+.+| .-......+.+.||++|+|+|++.+
T Consensus       149 ~~i~liDTp-G~~~~~~~~~~~aD~vl~Vvd~~~~  182 (341)
T 2p67_A          149 YDVVIVETV-GVGQSETEVARMVDCFISLQIAGGG  182 (341)
T ss_dssp             CSEEEEEEE-CCTTHHHHHHTTCSEEEEEECC---
T ss_pred             CCEEEEeCC-CccchHHHHHHhCCEEEEEEeCCcc
Confidence            478899987 5333333467999999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=80.23  E-value=7.5  Score=39.92  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=40.2

Q ss_pred             eeEEEEeCCCC---------------ChHH-HHHHHhhhc-eEEEeeeCCCccccccccccChH-HHHHHHHHHhcCCCc
Q 003796          123 LRTSVLQAPHG---------------DLVG-CMEMAKVAD-LVAFVASASSFSEESMSYYIDSF-GNQCLSVFRSLGLPS  184 (795)
Q Consensus       123 ~Ritfie~~~~---------------dl~~-~LD~aKvAD-lVll~idas~g~~~~~~~~fe~e-g~e~L~~l~aqG~P~  184 (795)
                      ..++|+..| +               .+.. +...++-|| +||+++|++.+        +... -..++..+...|.| 
T Consensus       125 ~~l~lvDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~~~~~~~~~~~~-  194 (299)
T 2aka_B          125 LNLTLVDLP-GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------LANSDALKIAKEVDPQGQR-  194 (299)
T ss_dssp             CSEEEEECC-CBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC--------GGGCHHHHHHHHHCTTCSS-
T ss_pred             CCceEEeCC-CCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc--------hhhhHHHHHHHHhCCCCCe-
Confidence            589999887 4               1222 334555555 55579999854        3222 24688888878875 


Q ss_pred             eEEEeccCCc
Q 003796          185 TAVLIRDLPT  194 (795)
Q Consensus       185 vigVl~~Ld~  194 (795)
                      +++|++..|.
T Consensus       195 ~i~V~NK~Dl  204 (299)
T 2aka_B          195 TIGVITKLDL  204 (299)
T ss_dssp             EEEEEECGGG
T ss_pred             EEEEEEcccc
Confidence            6778888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	795
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.2
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.97
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.89
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.88
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.58
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.55
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.37
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.36
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.25
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.25
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.18
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.96
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.96
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.67
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.18
d1wb1a2	79	Elongation factor SelB, domains 2 and 4 {Methanoco	96.12
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	95.51
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	95.38
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	95.11
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.31
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.12
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.8
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.42
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.36
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.69
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.42
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.24
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.01
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.46
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.6
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	90.4
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	90.14
d2fh5b1	207	Signal recognition particle receptor beta-subunit	89.93
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.67
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	89.49
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	88.25
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	87.66
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	87.55
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	86.73
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	86.46
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	86.11
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	85.95
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	85.86
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	85.75
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	85.63
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	85.56
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	85.45
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	85.3
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	84.86
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	84.6
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	84.45
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	83.49
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	83.4
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	83.32
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	82.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	82.84
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	81.81
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	81.49
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	80.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	80.71

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=1.2e-05  Score=78.89  Aligned_cols=137  Identities=15%  Similarity=0.164  Sum_probs=93.6

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCC---------------------CC--CcceEEEecCceeeEEEEeCCC-C
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG---------------------TG--ALSSTVSSSKYRLRTSVLQAPH-G  133 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~---------------------~~--~g~~tv~~~r~k~Ritfie~~~-~  133 (795)
                      |++-|+|+|-.+.+.. +|++.|+......+                     .+  .+.+.+...  +++++||.+|- .
T Consensus         2 ~~ini~iiGhvd~GKS-TL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~--~~~i~iiDtPGh~   78 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKT-TLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--KRHYSHVDCPGHA   78 (204)
T ss_dssp             CEEEEEEECSTTSSHH-HHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--SCEEEEEECCCSG
T ss_pred             CCeEEEEEeCCCCcHH-HHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeC--CeEEEEEeCCCch
Confidence            4566999998887775 67555554322111                     00  033334333  57899999973 3


Q ss_pred             C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhc
Q 003796          134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSL  210 (795)
Q Consensus       134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f  210 (795)
                      | +..|+-++.+||.+|||+||..|        +...|.+.|..++..|+|.+|.+++.+|. +.+.+ ..+++.++.++
T Consensus        79 df~~~~~~~~~~aD~avlVvda~~G--------v~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l  150 (204)
T d2c78a3          79 DYIKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  150 (204)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTC--------CCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence            3 66788999999999999999965        88899999999999999999998888884 21222 34566666665


Q ss_pred             cc-ccC-CCCeeEEeCC
Q 003796          211 TS-EFP-EDCKFYAADT  225 (795)
Q Consensus       211 ~~-ef~-~~~Klf~l~~  225 (795)
                      .. .++ ....++..+.
T Consensus       151 ~~~~~~~~~i~~i~~sa  167 (204)
T d2c78a3         151 NQYEFPGDEVPVIRGSA  167 (204)
T ss_dssp             HHTTSCTTTSCEEECCH
T ss_pred             HhcCCCcccceeeeeec
Confidence            43 333 2355566554

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.97  E-value=5e-05  Score=74.00  Aligned_cols=137  Identities=11%  Similarity=0.056  Sum_probs=92.3

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccC-------------CCCC--cceEEEec-----CceeeEEEEeCCCCC---hH
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSE-------------GTGA--LSSTVSSS-----KYRLRTSVLQAPHGD---LV  136 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~-------------~~~~--g~~tv~~~-----r~k~Ritfie~~~~d---l~  136 (795)
                      +-|||+|=...+++ +|.+.|++.+...             ...+  .-+|+.+.     -.++.++|+.|| .-   +.
T Consensus         4 ini~iiGHvd~GKS-TL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtP-Gh~~f~~   81 (196)
T d1d2ea3           4 VNVGTIGHVDHGKT-TLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCP-GHADYVK   81 (196)
T ss_dssp             EEEEEESSTTSSHH-HHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECS-SHHHHHH
T ss_pred             cEEEEEeCCCCcHH-HHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCc-chHHHHH
Confidence            44999997665554 5544445433111             0111  22344321     225789999998 54   66


Q ss_pred             HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhcccc-
Q 003796          137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSLTSE-  213 (795)
Q Consensus       137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f~~e-  213 (795)
                      .|+-++.+||.+|||+||..|        +..+|.+.+..++..|.+.+|.+++.+|. +...+ ..+++.++.++... 
T Consensus        82 ~~~~~~~~aD~allVVda~~G--------~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~  153 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG  153 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCC--------CchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhC
Confidence            788999999999999999965        77899999999999999999999998885 11222 33666677666532 


Q ss_pred             -cCCCCeeEEeCCH
Q 003796          214 -FPEDCKFYAADTK  226 (795)
Q Consensus       214 -f~~~~Klf~l~~~  226 (795)
                       .+...-+.+.|..
T Consensus       154 ~~~~~~pii~iSa~  167 (196)
T d1d2ea3         154 YKGEETPIIVGSAL  167 (196)
T ss_dssp             SCTTTSCEEECCHH
T ss_pred             CCcccCEEEEEEcc
Confidence             2334567777753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.89  E-value=7.7e-05  Score=72.60  Aligned_cols=110  Identities=11%  Similarity=0.119  Sum_probs=82.7

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK  197 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K  197 (795)
                      .++++++-||- .| +..|+.++..||++||++||..|        + +..+.+.+.++..-|++.+|.+++.+|. +..
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~g--------i~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~  156 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP--------FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE  156 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSC--------SSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceecccccccccccccc--------ccchhHHHHHHHHHHcCCceeeeccccCCCccch
Confidence            46899999982 22 46789999999999999999965        5 6688999999999999999999998885 333


Q ss_pred             hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhc
Q 003796          198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQ  239 (795)
Q Consensus       198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~  239 (795)
                      ........++.++....+....++++|.  -..+.+|+-.|..-
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         157 EALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            3444556666677666676788898884  22355666555543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=8.8e-05  Score=70.97  Aligned_cols=129  Identities=12%  Similarity=0.087  Sum_probs=81.8

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC-------cceEEEecCceeeEEEEeCCCCC-----------
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA-------LSSTVSSSKYRLRTSVLQAPHGD-----------  134 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~-------g~~tv~~~r~k~Ritfie~~~~d-----------  134 (795)
                      .+-|+ |+|+|.++.+.. +|    ++.+++...   ..       ..+.....   ..+.++..+...           
T Consensus        21 ~~~~~-I~lvG~~n~GKS-TL----in~L~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~   91 (195)
T d1svia_          21 GGLPE-IALAGRSNVGKS-SF----INSLINRKNLARTSSKPGKTQTLNFYIIN---DELHFVDVPGYGFAKVSKSEREA   91 (195)
T ss_dssp             SCCCE-EEEEEBTTSSHH-HH----HHHHHTC-------------CCEEEEEET---TTEEEEECCCBCCCSSCHHHHHH
T ss_pred             CCCCE-EEEECCCCCCHH-HH----HHHhcCCCceEEeecccceeeeccccccc---ccceEEEEEeeccccccccccch
Confidence            44555 899999998886 78    444443221   00       22222222   233444443110           


Q ss_pred             ----hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhh
Q 003796          135 ----LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISS  209 (795)
Q Consensus       135 ----l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~  209 (795)
                          +..++..+..+|+|++++|++.+        +..+..++++.|+..+.| ++.|+++.|. +..+..+..+.++..
T Consensus        92 ~~~~~~~~~~~~~~~~~vi~viD~~~~--------~~~~~~~~~~~l~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~  162 (195)
T d1svia_          92 WGRMIETYITTREELKAVVQIVDLRHA--------PSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWDKHAKVVRQT  162 (195)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred             hhhHHhhhhccccchhhhhhhhhcccc--------ccccccccccccccccCc-ceechhhccccCHHHHHHHHHHHHHH
Confidence                33455666678999999999854        778899999999999999 8889999885 213344555556555


Q ss_pred             cccccCCCCeeEEeC
Q 003796          210 LTSEFPEDCKFYAAD  224 (795)
Q Consensus       210 f~~ef~~~~Klf~l~  224 (795)
                      +.  ...+..+|.+|
T Consensus       163 l~--~~~~~~~~~~S  175 (195)
T d1svia_         163 LN--IDPEDELILFS  175 (195)
T ss_dssp             HT--CCTTSEEEECC
T ss_pred             hc--ccCCCCEEEEe
Confidence            54  23467888888

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.58  E-value=0.00053  Score=67.80  Aligned_cols=97  Identities=11%  Similarity=0.068  Sum_probs=74.3

Q ss_pred             ceeeEEEEeCCC--CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796          121 YRLRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK  197 (795)
Q Consensus       121 ~k~Ritfie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K  197 (795)
                      .+++++|+.||-  .-+..|+-.+.+||.+|||+||..|        +...|.+.|.++..-|+|.+|.+++.+|. ++.
T Consensus        87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G--------~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG--------VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred             cceEEEEEeccchhhhhhhhccccccCceEEEEeccccC--------cccchHHHHHHHHHcCCCEEEEEEEcccccccc
Confidence            357999999984  3578899999999999999999965        88899999999999999999999999885 212


Q ss_pred             --hhHHHHHHHHhhcccccCCCC--eeEEeCC
Q 003796          198 --KRKDLKKMCISSLTSEFPEDC--KFYAADT  225 (795)
Q Consensus       198 --k~~~~kK~lk~~f~~ef~~~~--Klf~l~~  225 (795)
                        .-...++.|..+++.-.....  .+.++|.
T Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA  190 (222)
T d1zunb3         159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSA  190 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCT
T ss_pred             ceehhhhHHHHhhhhHhhccCCCceEEEEEEc
Confidence              223456667777765433333  3456653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.55  E-value=0.00032  Score=66.43  Aligned_cols=139  Identities=17%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhc--cCC-CC-C---------cceEEEecCceeeEEEEeCCCCC---hHHHHHHHhh
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLS--SEG-TG-A---------LSSTVSSSKYRLRTSVLQAPHGD---LVGCMEMAKV  144 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~--~~~-~~-~---------g~~tv~~~r~k~Ritfie~~~~d---l~~~LD~aKv  144 (795)
                      -|||+|.++.+.+ +|.+.|++.-.  ..+ .. .         +...+...  +..++++.++ ..   +..+..+++.
T Consensus         7 nIaiiG~~naGKS-TL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~d~~-g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           7 NLGIFGHIDHGKT-TLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAP-GHADLIRAVVSAADI   82 (179)
T ss_dssp             EEEEEECTTSSHH-HHHHHHHTTC--------------------CCCEEEET--TEEEEECCCS-SHHHHHHHHHHHTTS
T ss_pred             EEEEEeCCCCcHH-HHHHHHHHhcCceecccccceeeeeeeccccccccccC--Cccccccccc-cccccccchhhhhhh
Confidence            3999999998875 77444442110  011 00 0         22233333  4678888776 32   3446778889


Q ss_pred             hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhccc--ccCCCCeeE
Q 003796          145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTS--EFPEDCKFY  221 (795)
Q Consensus       145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~--ef~~~~Klf  221 (795)
                      +|++++++|++.|        ....+.+++..+..+|+| ++.|++.+|. +..........++..+..  .+ .+..+|
T Consensus        83 ~d~~ilv~d~~~g--------~~~~~~~~~~~~~~~~~p-~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iv  152 (179)
T d1wb1a4          83 IDLALIVVDAKEG--------PKTQTGEHMLILDHFNIP-IIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL-KNSSII  152 (179)
T ss_dssp             CCEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-BCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG-GGCCEE
T ss_pred             ccccccccccccc--------cchhhhhhhhhhhhcCCc-ceeccccccccCHHHHHHHHHHHHHHHHHhhcC-CCCeEE
Confidence            9999999999965        677889999999999999 6677898885 111112222222222221  22 256888


Q ss_pred             EeCC-----HHHHHHHH
Q 003796          222 AADT-----KDELHKFL  233 (795)
Q Consensus       222 ~l~~-----~~E~~nL~  233 (795)
                      ++|.     -.|..+.+
T Consensus       153 ~iSA~~g~gi~eL~~~I  169 (179)
T d1wb1a4         153 PISAKTGFGVDELKNLI  169 (179)
T ss_dssp             ECCTTTCTTHHHHHHHH
T ss_pred             EEEccCCcCHHHHHHHH
Confidence            8884     34554444

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=0.0027  Score=59.34  Aligned_cols=141  Identities=10%  Similarity=0.016  Sum_probs=86.9

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC---------cceEEEecCceeeEEEEeCCCCC-----------hHHHHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPHGD-----------LVGCME  140 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---------g~~tv~~~r~k~Ritfie~~~~d-----------l~~~LD  140 (795)
                      .|+|+|.++.+.. +|    ++.|++.+...         ....-.......++.++..| .-           ...++.
T Consensus         7 ~I~lvG~~~~GKS-SL----in~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~Dtp-G~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           7 FVAIVGKPNVGKS-TL----LNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTP-GLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             EEEEECSTTSSHH-HH----HHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECC-CCCCCCSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCCceeecccCCcccccccceeeeeeeeeeecccc-cccccccccchhccccccc
Confidence            5999999999885 78    55555443211         11111111234688888776 31           112345


Q ss_pred             HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC-CceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL-PSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCK  219 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~-P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~K  219 (795)
                      +.+-||+||+|+|++.+        +......+++.|+..+- ..++.|++..|. .++.....+.++.    .++ ..+
T Consensus        81 ~~~~ad~il~v~D~~~~--------~~~~~~~i~~~l~~~~~~~piilv~NK~Dl-~~~~~~~~~~~~~----~~~-~~~  146 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHP--------PTPEDELVARALKPLVGKVPILLVGNKLDA-AKYPEEAMKAYHE----LLP-EAE  146 (178)
T ss_dssp             HTSSCSEEEEEEETTSC--------CCHHHHHHHHHHGGGTTTSCEEEEEECGGG-CSSHHHHHHHHHH----TST-TSE
T ss_pred             ccccccceeeeechhhh--------hcccccchhhheeccccchhhhhhhccccc-ccCHHHHHHHHHh----hcc-cCc
Confidence            56779999999999854        66666777788876543 247778999886 1333333333332    233 568


Q ss_pred             eEEeCC--HHHHHHHHHHHhhccc
Q 003796          220 FYAADT--KDELHKFLWLFKEQRL  241 (795)
Q Consensus       220 lf~l~~--~~E~~nL~R~Is~~k~  241 (795)
                      +|.+|.  ..-+..|...|+..-|
T Consensus       147 ~~~iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         147 PRMLSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             EEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             eEEEecCCCCCHHHHHHHHHHhCC
Confidence            888884  4557788888876554

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.36  E-value=0.00084  Score=68.24  Aligned_cols=101  Identities=22%  Similarity=0.227  Sum_probs=74.9

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCC-------------------------CCCcceEEEecCceeeEEEEeCCCCC
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEG-------------------------TGALSSTVSSSKYRLRTSVLQAPHGD  134 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-------------------------~~~g~~tv~~~r~k~Ritfie~~~~d  134 (795)
                      |-|||+|..+.++. +|+..|+.. ++..                         ...++.++...  ..+++||-|| .-
T Consensus         3 RNv~iiGh~~~GKT-tL~e~ll~~-~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~--~~~~n~iDtP-Gh   77 (267)
T d2dy1a2           3 RTVALVGHAGSGKT-TLTEALLYK-TGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAP-GY   77 (267)
T ss_dssp             EEEEEEESTTSSHH-HHHHHHHHH-TTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECC-CS
T ss_pred             eEEEEEcCCCCcHH-HHHHHHHHH-cCCchhhccchhccccccchHHHHHhCCeEEeeccccccc--ccceeEEccC-ch
Confidence            46899999887775 665555422 2110                         00034444433  4799999998 55


Q ss_pred             h---HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          135 L---VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       135 l---~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      .   ..++-+..+||.+|+|+||..|        +...|.++++.++.+|+|.++ +++.+|.
T Consensus        78 ~dF~~e~~~al~~~D~avlvvda~~G--------v~~~t~~~~~~~~~~~~p~~i-~iNk~D~  131 (267)
T d2dy1a2          78 GDFVGEIRGALEAADAALVAVSAEAG--------VQVGTERAWTVAERLGLPRMV-VVTKLDK  131 (267)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEE-EEECGGG
T ss_pred             hhhhhhhhhhhcccCceEEEeeccCC--------ccchhHHHHHhhhhccccccc-ccccccc
Confidence            3   4789999999999999999965        889999999999999999877 5677774

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.0015  Score=61.30  Aligned_cols=82  Identities=15%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc---chhhhHHHHHHHHhh
Q 003796          133 GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT---DLKKRKDLKKMCISS  209 (795)
Q Consensus       133 ~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~---~~Kk~~~~kK~lk~~  209 (795)
                      .....++..++.||++++++|++.|        +..+..++++.+...|.|. |.|++..|.   ..++.....+.++..
T Consensus        80 ~~~~~~~~~~~~~dvii~v~d~~~~--------~~~~~~~~~~~~~~~~~~~-i~v~nK~D~~~~~~~~~~~~~~~~~~~  150 (186)
T d1mkya2          80 YSNYRVVDSIEKADVVVIVLDATQG--------ITRQDQRMAGLMERRGRAS-VVVFNKWDLVVHREKRYDEFTKLFREK  150 (186)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCEE-EEEEECGGGSTTGGGCHHHHHHHHHHH
T ss_pred             chhHHHHHHHhcCCEEEEeeccccc--------chhhHHHHHHHHHHcCCce-eeeccchhhhcchhhhhhhHHHHHHHH
Confidence            4456788889999999999999965        7888999999999999886 446666653   112234456666666


Q ss_pred             cccccCCCCeeEEeCC
Q 003796          210 LTSEFPEDCKFYAADT  225 (795)
Q Consensus       210 f~~ef~~~~Klf~l~~  225 (795)
                      ++.  .....+|++|.
T Consensus       151 ~~~--~~~~~i~~vSa  164 (186)
T d1mkya2         151 LYF--IDYSPLIFTSA  164 (186)
T ss_dssp             CGG--GTTSCEEECBT
T ss_pred             hcc--cCCCeEEEEeC
Confidence            543  23568999984

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.25  E-value=0.00026  Score=69.99  Aligned_cols=105  Identities=10%  Similarity=0.105  Sum_probs=69.1

Q ss_pred             CCEEEEEecCCCccChhhHHHHHHHhhccCC----CCC--cceEEE----------------ecCceeeEEEEeCCC-CC
Q 003796           78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG----TGA--LSSTVS----------------SSKYRLRTSVLQAPH-GD  134 (795)
Q Consensus        78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~----~~~--g~~tv~----------------~~r~k~Ritfie~~~-~d  134 (795)
                      +|+ |||+|-++.+++ +|++.|+..-....    .+.  +...+.                ..-...+++|+-+|- .+
T Consensus         5 ~p~-IaIiGh~d~GKS-TL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           5 SPI-VSVLGHVDHGKT-TLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CCE-EEEECSTTSSHH-HHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCE-EEEEeCCCccHH-HHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence            366 999998887765 67565565421111    010  111111                011235799999972 22


Q ss_pred             -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 003796          135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP  193 (795)
Q Consensus       135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld  193 (795)
                       ...++.++..||++|||+||..|        ++..+.+++..|..+|+| +|.||+.+|
T Consensus        83 f~~~~~~~~~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~p-~iivlNK~D  133 (227)
T d1g7sa4          83 FTTLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYRTP-FVVAANKID  133 (227)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCC-EEEEEECGG
T ss_pred             ccccchhcccccceEEEEEecccC--------cccchhHHHHHhhcCCCe-EEEEEECcc
Confidence             34455677889999999999955        899999999999999999 555666665

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.18  E-value=0.0015  Score=66.63  Aligned_cols=119  Identities=13%  Similarity=0.046  Sum_probs=82.1

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCC----C-----------C---------cceEEEecCceeeEEEEeCCC-CC
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT----G-----------A---------LSSTVSSSKYRLRTSVLQAPH-GD  134 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~----~-----------~---------g~~tv~~~r~k~Ritfie~~~-~d  134 (795)
                      |-|+|+|..++++. +|+..|+..-...+.    .           +         ...++.-  .+.+++|+-+|- .|
T Consensus         7 Rni~i~gh~~~GKT-tL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~--~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           7 RNIGIAAHIDAGKT-TTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDAPGHVD   83 (276)
T ss_dssp             EEEEEEECTTSCHH-HHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE--TTEEEEEECCCSSSS
T ss_pred             eEEEEEeCCCCCHH-HHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc--CCeEEEEecCCchhh
Confidence            35899999887775 565655532211110    0           0         2233333  357999999974 23


Q ss_pred             -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhc
Q 003796          135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSL  210 (795)
Q Consensus       135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f  210 (795)
                       +..++-+..+||.+|+||||..|        ++..|..+++.++.+|+|++ .+++.+|.....-.++...++.+|
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~G--------v~~~T~~~w~~a~~~~lP~i-~fINKmDr~~ad~~~~l~ei~~~l  151 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQG--------VEPQSETVWRQAEKYKVPRI-AFANKMDKTGADLWLVIRTMQERL  151 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTS--------SCHHHHHHHHHHHTTTCCEE-EEEECTTSTTCCHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhhhheEEeccccCC--------cchhHHHHHHHHHHcCCCEE-EEEecccccccccchhHHHHHHHh
Confidence             66789999999999999999965        89999999999999999965 567888852223344556666555

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.0014  Score=65.49  Aligned_cols=96  Identities=14%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             cceEEEecCceeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCcccccccccc--ChHHHHHHHHHHhcCCCceEE
Q 003796          112 LSSTVSSSKYRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI--DSFGNQCLSVFRSLGLPSTAV  187 (795)
Q Consensus       112 g~~tv~~~r~k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~f--e~eg~e~L~~l~aqG~P~vig  187 (795)
                      +...+...  +++++||.||- .| +..|+-.+.+||.+||||||..|. ++  .+|  .-.|.+.+.+++.-|+|++|.
T Consensus        75 ~~~~~~~~--~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~-~e--~g~~~~~QT~eh~~~~~~~gv~~iiv  149 (239)
T d1f60a3          75 ALWKFETP--KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE-FE--AGISKDGQTREHALLAFTLGVRQLIV  149 (239)
T ss_dssp             SCEEEECS--SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH-HH--HHTCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred             ceeEeccC--CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCc-cc--cccCchHhHHHHHHHHHHcCCCeEEE
Confidence            44455544  58999999974 44 457899999999999999999661 11  122  347999999999999999999


Q ss_pred             EeccCCc-ch-hhh-HHHHHHHHhhccc
Q 003796          188 LIRDLPT-DL-KKR-KDLKKMCISSLTS  212 (795)
Q Consensus       188 Vl~~Ld~-~~-Kk~-~~~kK~lk~~f~~  212 (795)
                      +++.+|. ++ +.+ ..+++.++.++..
T Consensus       150 ~iNKmD~~~~d~~~~~~~~~el~~~l~~  177 (239)
T d1f60a3         150 AVNKMDSVKWDESRFQEIVKETSNFIKK  177 (239)
T ss_dssp             EEECGGGGTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999885 11 222 3355555555543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.96  E-value=0.0014  Score=62.67  Aligned_cols=95  Identities=15%  Similarity=0.176  Sum_probs=73.8

Q ss_pred             eeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhh
Q 003796          123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKK  198 (795)
Q Consensus       123 ~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk  198 (795)
                      .+++|+.|| .-   +..|+..+..||.+|+++|+..|.       ....+.|.|.+++..|.|.++.+++.+|. +..+
T Consensus        78 ~~~~~iDtP-Gh~~f~~~~~~~~~~~d~~ilvvda~~g~-------~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~  149 (195)
T d1kk1a3          78 RRVSFIDAP-GHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK  149 (195)
T ss_dssp             EEEEEEECS-SHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred             eeEeeeccc-hhhhhhHHhhcccccccccccccchhhhh-------hhhhhHHHHHHHHHhcCccceeeeecccchhhHH
Confidence            569999998 43   446788889999999999999651       24568999999999999999999988775 2233


Q ss_pred             hHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796          199 RKDLKKMCISSLTSEFPEDCKFYAADT  225 (795)
Q Consensus       199 ~~~~kK~lk~~f~~ef~~~~Klf~l~~  225 (795)
                      .....+.++.+++...+....++++|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~iIpiSA  176 (195)
T d1kk1a3         150 ALENYRQIKEFIEGTVAENAPIIPISA  176 (195)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEEC
Confidence            345566777777777777778888884

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.016  Score=53.23  Aligned_cols=100  Identities=13%  Similarity=0.115  Sum_probs=62.5

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC---C------cceEEEecCceeeEEEEeCCC-----------CChHHHHH
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSSTVSSSKYRLRTSVLQAPH-----------GDLVGCME  140 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~------g~~tv~~~r~k~Ritfie~~~-----------~dl~~~LD  140 (795)
                      -|+|+|+++.+.+ +|    ++.|++.+..   .      ..+.-........+.+...+.           .-....+.
T Consensus         2 ~V~liG~~n~GKS-sL----i~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   76 (171)
T d1mkya1           2 TVLIVGRPNVGKS-TL----FNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLN   76 (171)
T ss_dssp             EEEEECCTTSSHH-HH----HHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccc
Confidence            4899999998886 77    4444433211   1      111111111123344443321           01334566


Q ss_pred             HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +..-||+|+++++++.+        +..+..+++..|+.+|.| ++.|++..|.
T Consensus        77 ~~~~ad~i~~~~~~~~~--------~~~~~~~~~~~l~~~~~p-viiv~NK~Dl  121 (171)
T d1mkya1          77 MIREADLVLFVVDGKRG--------ITKEDESLADFLRKSTVD-TILVANKAEN  121 (171)
T ss_dssp             HHTTCSEEEEEEETTTC--------CCHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred             ccccCcEEEEeeccccc--------cccccccccccccccccc-ccccchhhhh
Confidence            67889999999999854        777788899999999998 6777899886

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.18  E-value=0.0085  Score=55.51  Aligned_cols=145  Identities=15%  Similarity=0.157  Sum_probs=80.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC--------cceEEEecCceeeEEEEeCCCC-----------------ChH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSSTVSSSKYRLRTSVLQAPHG-----------------DLV  136 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~tv~~~r~k~Ritfie~~~~-----------------dl~  136 (795)
                      |+++|+++.+.. +|    +..+++.....        .++.+..    .++.|+..|--                 -..
T Consensus         3 I~lvG~~nvGKS-sL----in~l~~~~~~~~~~~g~T~~~~~~~~----~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~   73 (184)
T d2cxxa1           3 IIFAGRSNVGKS-TL----IYRLTGKKVRRGKRPGVTRKIIEIEW----KNHKIIDMPGFGFMMGLPKEVQERIKDEIVH   73 (184)
T ss_dssp             EEEEEBTTSSHH-HH----HHHHHSCCCSSSSSTTCTTSCEEEEE----TTEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHH-HH----HHHHhCCCceeeCCCCEeeccccccc----ccceecccCCceeccccccccccccchhhhh
Confidence            899999998886 78    44444332211        2333332    24567766621                 023


Q ss_pred             HHHHHHhhhceEEEeeeCCCccccc---cccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccc
Q 003796          137 GCMEMAKVADLVAFVASASSFSEES---MSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSE  213 (795)
Q Consensus       137 ~~LD~aKvADlVll~idas~g~~~~---~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~e  213 (795)
                      .+.+.++-+|++++++|++......   ...++-....++++.|...|.| ++.|++..|. .+........+...+...
T Consensus        74 ~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p-~iiv~NK~D~-~~~~~~~~~~~~~~~~~~  151 (184)
T d2cxxa1          74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDK-IKNVQEVINFLAEKFEVP  151 (184)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGG-CSCHHHHHHHHHHHHTCC
T ss_pred             hhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCC-EEEEEeeeeh-hhhHHHHHHHHHHHhccc
Confidence            3556778899999999987320000   0012333456788889999999 6678999885 122233333344444333


Q ss_pred             cCC-CCeeEEeCCH--HHHHHHHHHHh
Q 003796          214 FPE-DCKFYAADTK--DELHKFLWLFK  237 (795)
Q Consensus       214 f~~-~~Klf~l~~~--~E~~nL~R~Is  237 (795)
                      +.. ...++++|..  .-+..|...|+
T Consensus       152 ~~~~~~~~~~vSA~~g~gi~~L~~~i~  178 (184)
T d2cxxa1         152 LSEIDKVFIPISAKFGDNIERLKNRIF  178 (184)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHH
Confidence            321 2346667632  22455555554

>d1wb1a2 b.43.3.1 (A:390-468) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor SelB, domains 2 and 4
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.12  E-value=0.0013  Score=52.35  Aligned_cols=70  Identities=20%  Similarity=0.320  Sum_probs=65.2

Q ss_pred             eeEEeeeeEEEeecCCChhhccccccceeeeccc-ccceeeCCCCCCceeEEEeccccccccEEEEeccee
Q 003796          711 PQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCG-RRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKR  780 (795)
Q Consensus       711 P~KI~K~tA~Ir~MF~n~~dV~~Fk~a~L~TksG-irG~IK~~lgt~G~fka~Fe~~i~~~D~V~m~lykr  780 (795)
                      -.||-|..++|-++=.|..-..+-.|-++++..+ +.|.||-..||.|+.-|-|++.+...|.|.|+--.|
T Consensus         7 ~i~i~K~r~~IegLA~sK~~aEkLIGe~v~i~~k~i~Gkik~TfGTkG~l~adF~geV~n~dkV~L~RlRr   77 (79)
T d1wb1a2           7 KVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRR   77 (79)
T ss_dssp             EEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTTTTBBCCCBSSCCCSSCEEEEECCCS
T ss_pred             cEEEecCcEEeeecccchhHHHhhcCcEEEecCCceEEEEeccccCceEEEEEeccccCCCceehhhhhhc
Confidence            3588999999999999999999999999999999 999999999999999999999999999999875443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.035  Score=57.81  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=52.5

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP  193 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld  193 (795)
                      ...|+||-+|- -| +..++-++.+||.+||||||..|        +...|.++|+.+...|+|.++. |+.+|
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eG--------v~~qT~~~~~~a~~~~~p~i~v-iNKiD  159 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG--------VCVQTETVLRQALGERIKPVVV-INKVD  159 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCEEEEE-EECHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccC--------cchhHHHHHHHHHHcCCCeEEE-EECcc
Confidence            45799999983 24 55688889999999999999965        8899999999999999998776 45555

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.38  E-value=0.01  Score=59.08  Aligned_cols=90  Identities=21%  Similarity=0.194  Sum_probs=58.3

Q ss_pred             eeeEEEEeCCC--CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc---ch
Q 003796          122 RLRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT---DL  196 (795)
Q Consensus       122 k~Ritfie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~---~~  196 (795)
                      .++++|+.||-  .=+..|+..+.+||.+|||+||..|... ....+...|.|.|.++...|+|.++.+++.+|.   ++
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~-~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE-AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHH-HTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccC-CccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccch
Confidence            47899999984  2367799999999999999999977211 001123479999999999999999999999884   11


Q ss_pred             h--hhHHHHHHHHhhccc
Q 003796          197 K--KRKDLKKMCISSLTS  212 (795)
Q Consensus       197 K--k~~~~kK~lk~~f~~  212 (795)
                      .  +-..+++.++.++..
T Consensus       180 ~e~~~~ei~~~l~~~l~~  197 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRR  197 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            1  123455556555544

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.11  E-value=0.035  Score=53.91  Aligned_cols=102  Identities=17%  Similarity=0.197  Sum_probs=69.3

Q ss_pred             eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc----
Q 003796          122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD----  195 (795)
Q Consensus       122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~----  195 (795)
                      +..++||-||- .| +..|+-++.+||.+|||+||..|....+ ..+...+.|.|.+++..|++.+|.+++.+|..    
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t-~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG-MSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHH-HSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCccccc-ccccchhHHHHHHHHHhCCCceEEEEEcccCCCccc
Confidence            47899999974 34 5569999999999999999997732111 12345788999999999999999999888841    


Q ss_pred             -hhhhHHHHHHHHhhcccc--cCCCCeeEEeC
Q 003796          196 -LKKRKDLKKMCISSLTSE--FPEDCKFYAAD  224 (795)
Q Consensus       196 -~Kk~~~~kK~lk~~f~~e--f~~~~Klf~l~  224 (795)
                       ..+...+...++.++...  .+....+..+|
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPIS  190 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVV  190 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEE
Confidence             111233445555544432  22334555555

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.31  E-value=0.03  Score=50.42  Aligned_cols=122  Identities=16%  Similarity=0.136  Sum_probs=67.1

Q ss_pred             EEEecCCCccChhhHHHHHHHhh-ccCCCC--C--cc--eEEEecCceeeEEEEeCCC-----------CChHHHHHHHh
Q 003796           82 IVLFGLSASVNLNSVREDLLRQL-SSEGTG--A--LS--STVSSSKYRLRTSVLQAPH-----------GDLVGCMEMAK  143 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~-~~~~~~--~--g~--~tv~~~r~k~Ritfie~~~-----------~dl~~~LD~aK  143 (795)
                      |+++|.++.+.. ||++.|...- ...+..  .  .+  ..+...  ...+.++..|-           -.+...+..++
T Consensus         3 I~liG~~n~GKS-SLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           3 MVIVGKPNVGKS-TLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEECCHHHHTC-HHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             EEEECCCCCCHH-HHHHHHhCCCceeeeccccccccceeEEEEeC--CeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            899999998886 7744333210 001110  0  12  222222  35677776641           12356788889


Q ss_pred             hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh-HHHHHHHHhhcccccCCCCeeEE
Q 003796          144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR-KDLKKMCISSLTSEFPEDCKFYA  222 (795)
Q Consensus       144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~-~~~kK~lk~~f~~ef~~~~Klf~  222 (795)
                      .||+||+|+|++.+        ..++..++...+   .-..++.+++..|...+.. .....        .+..+..+|.
T Consensus        80 ~ad~ii~v~d~~~~--------~~~~~~~~~~~~---~~~~~i~~~~k~d~~~~~~~~~~~~--------~~~~~~~~~~  140 (160)
T d1xzpa2          80 KADIVLFVLDASSP--------LDEEDRKILERI---KNKRYLVVINKVDVVEKINEEEIKN--------KLGTDRHMVK  140 (160)
T ss_dssp             HCSEEEEEEETTSC--------CCHHHHHHHHHH---TTSSEEEEEEECSSCCCCCHHHHHH--------HHTCSTTEEE
T ss_pred             hCCEEEEEEeCCCC--------cchhhhhhhhhc---ccccceeeeeeccccchhhhHHHHH--------HhCCCCcEEE
Confidence            99999999999954        444555554443   3345666677766511221 22222        2233567888


Q ss_pred             eCC
Q 003796          223 ADT  225 (795)
Q Consensus       223 l~~  225 (795)
                      +|.
T Consensus       141 vSA  143 (160)
T d1xzpa2         141 ISA  143 (160)
T ss_dssp             EEG
T ss_pred             EEC
Confidence            773

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.12  E-value=0.28  Score=44.82  Aligned_cols=139  Identities=14%  Similarity=0.134  Sum_probs=76.1

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC-------cceE--EEecCceeeEEEEeCCC---------CChHHHHHHHh
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-------LSST--VSSSKYRLRTSVLQAPH---------GDLVGCMEMAK  143 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-------g~~t--v~~~r~k~Ritfie~~~---------~dl~~~LD~aK  143 (795)
                      ||++|.++.+.+ +|    +..|++.+...       .-.+  +.......+++|+..|-         .-...++..+.
T Consensus         4 VaivG~~nvGKS-TL----in~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~   78 (180)
T d1udxa2           4 VGLVGYPNAGKS-SL----LAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA   78 (180)
T ss_dssp             EEEECCGGGCHH-HH----HHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred             EEEECCCCCCHH-HH----HHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHH
Confidence            899999998886 77    66666543211       1111  22222346788887762         22367889999


Q ss_pred             hhceEEEeeeCCCccccccccccChHHHHHHHH--HHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeE
Q 003796          144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSV--FRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFY  221 (795)
Q Consensus       144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~--l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf  221 (795)
                      .+|++++++|++...    ...++.+ ...|..  ...++.| ++.|++..|...+.   ..+.++..+..   .+.++|
T Consensus        79 ~~~~~~~~~d~~~~~----~~~~~~~-~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~---~~~~~~~~~~~---~~~~~~  146 (180)
T d1udxa2          79 RTRVLLYVLDAADEP----LKTLETL-RKEVGAYDPALLRRP-SLVALNKVDLLEEE---AVKALADALAR---EGLAVL  146 (180)
T ss_dssp             SSSEEEEEEETTSCH----HHHHHHH-HHHHHHHCHHHHHSC-EEEEEECCTTSCHH---HHHHHHHHHHT---TTSCEE
T ss_pred             hhhhhhhhccccccc----ccchhhh-hhhhhccccccchhh-hhhhhhhhhhhhHH---HHHHHHHHHHh---cCCeEE
Confidence            999999999987420    0011111 122222  2234555 56678888851121   11222222222   266889


Q ss_pred             EeCC-----HHHHHHHHHHHh
Q 003796          222 AADT-----KDELHKFLWLFK  237 (795)
Q Consensus       222 ~l~~-----~~E~~nL~R~Is  237 (795)
                      .+|.     -.++...++.+.
T Consensus       147 ~iSA~tg~gid~L~~~i~~~l  167 (180)
T d1udxa2         147 PVSALTGAGLPALKEALHALV  167 (180)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHHHH
Confidence            9883     444444443333

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.80  E-value=0.36  Score=43.39  Aligned_cols=101  Identities=13%  Similarity=0.087  Sum_probs=61.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC--CC----CcceEEEecCceeeEEEEeCCCCCh---HHHHHHHhhhceEEEee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG--TG----ALSSTVSSSKYRLRTSVLQAPHGDL---VGCMEMAKVADLVAFVA  152 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~--~~----~g~~tv~~~r~k~Ritfie~~~~dl---~~~LD~aKvADlVll~i  152 (795)
                      |+++|+++++.. +|    +..|+...  ..    .|...........++.+++.+ ...   ......++-||.+++++
T Consensus         5 i~i~G~~~~GKT-sL----l~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~-G~~~~~~~~~~~~~~~~~~i~v~   78 (164)
T d1zd9a1           5 LTLVGLQYSGKT-TF----VNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG-GQPRFRSMWERYCRGVSAIVYMV   78 (164)
T ss_dssp             EEEECSTTSSHH-HH----HHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEEC-CSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             EEEECCCCCCHH-HH----HHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeecc-ccccccccccccccccchhhccc
Confidence            789999999886 77    44443222  11    132222222235688888887 432   23455688899999999


Q ss_pred             eCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796          153 SASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT  194 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~  194 (795)
                      |++.-      ..|+.....++.+++....+.  ++.|.++.|.
T Consensus        79 d~~~~------~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl  116 (164)
T d1zd9a1          79 DAADQ------EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL  116 (164)
T ss_dssp             ETTCG------GGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred             ccccc------cccchhhhhhhhhhhhhcccCCcEEEEEecccc
Confidence            98742      346655566666666543332  4456788775

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.42  E-value=0.38  Score=43.49  Aligned_cols=145  Identities=10%  Similarity=0.099  Sum_probs=76.7

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEEEe
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVAFV  151 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVll~  151 (795)
                      ..=|+|+|+++.+.. +|    +..|.......     |..+........++.+..++... +.. .-...+-||.+|++
T Consensus        16 ~~kI~vvG~~~vGKS-sL----i~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   90 (176)
T d1fzqa_          16 EVRILLLGLDNAGKT-TL----LKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (176)
T ss_dssp             CEEEEEEESTTSSHH-HH----HHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCCCHH-HH----HHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence            455899999999886 77    66665433221     32222222123577888776433 323 34677889999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeCC--
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADT--  225 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--  225 (795)
                      +|++..      ..|+.....+..+++   .++.| ++.|++..|. +........+.+.-.+-..  ....+|..|.  
T Consensus        91 ~d~~d~------~s~~~~~~~~~~~~~~~~~~~~p-illv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~t  161 (176)
T d1fzqa_          91 IDSADR------KRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAPASEIAEGLNLHTIRD--RVWQIQSCSALT  161 (176)
T ss_dssp             EETTCG------GGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCCHHHHHHHTTGGGCCS--SCEEEEECCTTT
T ss_pred             eccccc------cchhhhhhhhhhhhhhhccCCCe-EEEEEEeccccccccHHHHHHHHHHHHHHh--cCCEEEEEeCCC
Confidence            999843      234443333333333   33555 5666787775 1112233444333221111  1356777773  


Q ss_pred             HHHHHHHHHHHh
Q 003796          226 KDELHKFLWLFK  237 (795)
Q Consensus       226 ~~E~~nL~R~Is  237 (795)
                      -.-+..+...|+
T Consensus       162 g~gv~e~~~~l~  173 (176)
T d1fzqa_         162 GEGVQDGMNWVC  173 (176)
T ss_dssp             CTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            222444444443

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.36  E-value=0.25  Score=44.80  Aligned_cols=137  Identities=7%  Similarity=0.075  Sum_probs=75.2

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVl  149 (795)
                      |+|+|.++.+.. +|    +..|....      ...|    ...+.......+++|+..+. ....+|... ++-||.+|
T Consensus         8 i~vvG~~~vGKT-sL----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           8 ILIIGNSSVGKT-SF----LFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             EEEECSTTSSHH-HH----HHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            889999998876 77    44443221      1112    23334444456788887653 346667664 78899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeC
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAAD  224 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~l~  224 (795)
                      |++|.+..      ..|+.. .+.+..++.+.  -+.++.|.+..|...++   ....++..++.       +.+.|..|
T Consensus        83 lv~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~-------~~~~~e~S  148 (169)
T d3raba_          83 LMYDITNE------ESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL-------GFEFFEAS  148 (169)
T ss_dssp             EEEETTCH------HHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-------TCEEEECB
T ss_pred             EEEECccc------hhhhhh-hhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHc-------CCEEEEec
Confidence            99999853      223322 23333343333  33455567888852121   12233333221       35677777


Q ss_pred             C-----HHHH-HHHHHHHh
Q 003796          225 T-----KDEL-HKFLWLFK  237 (795)
Q Consensus       225 ~-----~~E~-~nL~R~Is  237 (795)
                      .     -.|+ ..|++.|.
T Consensus       149 ak~g~gv~e~f~~l~~~i~  167 (169)
T d3raba_         149 AKDNINVKQTFERLVDVIC  167 (169)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            3     4554 34666554

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.69  E-value=0.41  Score=42.80  Aligned_cols=101  Identities=9%  Similarity=0.123  Sum_probs=61.1

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEecCceeeEEEEeCCCCC-hH-HHHHHHhhhceEEEeeeC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSKYRLRTSVLQAPHGD-LV-GCMEMAKVADLVAFVASA  154 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~r~k~Ritfie~~~~d-l~-~~LD~aKvADlVll~ida  154 (795)
                      |+|+|+++++.. +|    +..|+......     |............+.++..+-.. +. ..-...+-+|.+++++|+
T Consensus         5 i~ivG~~~~GKT-sL----i~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   79 (165)
T d1ksha_           5 LLMLGLDNAGKT-TI----LKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   79 (165)
T ss_dssp             EEEECSTTSSHH-HH----HHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred             EEEECCCCCCHH-HH----HHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeec
Confidence            789999998886 77    55565433222     33333332234678888876222 21 223466779999999998


Q ss_pred             CCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796          155 SSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT  194 (795)
Q Consensus       155 s~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~  194 (795)
                      +.-      ..|+.....+..++.   .++.| ++.|+++.|.
T Consensus        80 ~d~------~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl  115 (165)
T d1ksha_          80 ADR------QRMQDCQRELQSLLVEERLAGAT-LLIFANKQDL  115 (165)
T ss_dssp             TCG------GGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred             ccc------hhHHHHHHhhhhhhhhcccCCCc-eEEEEecccc
Confidence            742      345555555555554   44554 5566788775

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.37  Score=43.44  Aligned_cols=102  Identities=10%  Similarity=0.029  Sum_probs=58.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCC---cceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGA---LSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~---g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll  150 (795)
                      |+|||.++.+.. ||    +..|+...      .+.   ...++......-++.+...+. ....++. ...+-||.+|+
T Consensus         6 ivvvG~~~vGKT-sl----i~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           6 LVVLGSGGVGKS-AL----TVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             EEEECSTTSSHH-HH----HHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             EEEECCCCCCHH-HH----HHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            789999998886 77    55443221      111   223333344455666666542 3333343 35788999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~  194 (795)
                      ++|.+..      ..|+.-...+-.+++..+.+.  ++.|.+..|.
T Consensus        81 v~d~~~~------~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl  120 (167)
T d1c1ya_          81 VYSITAQ------STFNDLQDLREQILRVKDTEDVPMILVGNKCDL  120 (167)
T ss_dssp             EEETTCH------HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred             eeeccch------hhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCc
Confidence            9999853      345554444444555455443  3555677775

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.44  Score=42.85  Aligned_cols=77  Identities=9%  Similarity=0.042  Sum_probs=48.8

Q ss_pred             HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCC
Q 003796          139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPED  217 (795)
Q Consensus       139 LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~  217 (795)
                      +..+..++.++.+.++..+        ......+++..+..++.+.++ |++.+|. +.....+..+.++..+..+.+ .
T Consensus        93 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-v~~k~D~~~~~~~~~~~~~~~~~l~~~~~-~  162 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHP--------LKDLDQQMIEWAVDSNIAVLV-LLTKADKLASGARKAQLNMVREAVLAFNG-D  162 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCCEEE-EEECGGGSCHHHHHHHHHHHHHHHGGGCS-C
T ss_pred             hhhhhheeEEEEeeccccc--------chhHHHHHHHHhhhccccccc-hhhhhhccCHHHHHHHHHHHHHHHHhhCC-C
Confidence            3334456667777777643        667788999999999888766 4455553 112233455556666655444 6


Q ss_pred             CeeEEeCC
Q 003796          218 CKFYAADT  225 (795)
Q Consensus       218 ~Klf~l~~  225 (795)
                      .++|.+|.
T Consensus       163 ~~~i~vSA  170 (188)
T d1puia_         163 VQVETFSS  170 (188)
T ss_dssp             EEEEECBT
T ss_pred             CcEEEEeC
Confidence            78999884

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.77  Score=41.24  Aligned_cols=140  Identities=11%  Similarity=0.144  Sum_probs=72.5

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCC------C---cce-EEEecCceeeEEEEeCCCCChHHH---HHH------
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG------A---LSS-TVSSSKYRLRTSVLQAPHGDLVGC---MEM------  141 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~---g~~-tv~~~r~k~Ritfie~~~~dl~~~---LD~------  141 (795)
                      +|+|+|.++.+++ +|    ++.+++.+..      .   ..+ .+.... ...+.++.-+.......   ...      
T Consensus         7 ~I~iiG~~nvGKS-SL----in~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           7 FIAIVGRPNVGKS-TL----LNKLLGQKISITSRKAQTTRHRIVGIHTEG-AYQAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             EEEEECSSSSSHH-HH----HHHHHTCSEEECCCCSSCCSSCEEEEEEET-TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCCceeeccCCCceEEEEEeeeecC-CceeEeecCCCceecchhhhhhhhhhccc
Confidence            3899999998886 78    5555443211      0   111 222222 23333443332332221   121      


Q ss_pred             --HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 003796          142 --AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCK  219 (795)
Q Consensus       142 --aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~K  219 (795)
                        ...+|++||+.|++.         ...+..++...|.....| ++.|++..|. .....+....+. .+..++ ....
T Consensus        81 ~~~~~~~~~l~~~d~~~---------~~~~~~~~~~~l~~~~~~-~i~v~~k~d~-~~~~~~~~~~~~-~~~~~~-~~~~  147 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTR---------WTPDDEMVLNKLREGKAP-VILAVNKVDN-VQEKADLLPHLQ-FLASQM-NFLD  147 (179)
T ss_dssp             SCCCCEEEEEEEEETTC---------CCHHHHHHHHHHHSSSSC-EEEEEESTTT-CCCHHHHHHHHH-HHHTTS-CCSE
T ss_pred             cchhhcceeEEEEecCc---------cchhHHHHHHHhhhccCc-eeeeeeeeec-cchhhhhhhHhh-hhhhhc-CCCC
Confidence              235889999999873         334556666666666666 5666666664 122222222222 222223 3568


Q ss_pred             eEEeCC--HHHHHHHHHHHhhc
Q 003796          220 FYAADT--KDELHKFLWLFKEQ  239 (795)
Q Consensus       220 lf~l~~--~~E~~nL~R~Is~~  239 (795)
                      +|.+|.  ..-+..|...|+..
T Consensus       148 ~~~vSA~~g~gi~~L~~~i~~~  169 (179)
T d1egaa1         148 IVPISAETGLNVDTIAAIVRKH  169 (179)
T ss_dssp             EEECCTTTTTTHHHHHHHHHTT
T ss_pred             EEEEeCcCCCCHHHHHHHHHHh
Confidence            899884  33456666666554

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.46  E-value=0.67  Score=42.78  Aligned_cols=102  Identities=13%  Similarity=0.077  Sum_probs=59.9

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC----cceEEEecCceeeEEEEeCCCCC-------hHHHHHHHhhhceEE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----LSSTVSSSKYRLRTSVLQAPHGD-------LVGCMEMAKVADLVA  149 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g~~tv~~~r~k~Ritfie~~~~d-------l~~~LD~aKvADlVl  149 (795)
                      .|+++|+++.+.. +|    +..|++.....    ...+.........++++.+| ..       ...+..++..+|.++
T Consensus         5 ~V~lvG~~n~GKT-SL----ln~l~~~~~~~~tt~~~~~~~~~~~~~~~~l~D~~-g~~~~~~~~~~~~~~~~~~~~~~i   78 (209)
T d1nrjb_           5 SIIIAGPQNSGKT-SL----LTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFP-GHVKLRYKLSDYLKTRAKFVKGLI   78 (209)
T ss_dssp             EEEEECSTTSSHH-HH----HHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECC-CCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             EEEEECCCCCCHH-HH----HHHHhCCCCCCeEEecceEEEEEeCCeEEEEEecc-cccchhhHHHHHHHHHhhhccccc
Confidence            4789999998886 78    44444333221    11222223345688898887 43       344555667779999


Q ss_pred             EeeeCCCccccccccccCh---HH---HHHHHHHHhcCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDS---FG---NQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~---eg---~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +++|+....     ..++.   +-   .+.+.-+...|.| ++.|++..|.
T Consensus        79 ~~vd~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~p-iiiv~NK~D~  123 (209)
T d1nrjb_          79 FMVDSTVDP-----KKLTTTAEFLVDILSITESSCENGID-ILIACNKSEL  123 (209)
T ss_dssp             EEEETTSCT-----TCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTS
T ss_pred             eEEEEeccc-----ccHHHHHHHHHHHHHHHHHHHhccCC-eEEEEEeecc
Confidence            999988541     11322   22   2333444556778 4446787775

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.00  E-value=0.7  Score=41.68  Aligned_cols=101  Identities=12%  Similarity=0.102  Sum_probs=59.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCCc---ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll  150 (795)
                      |+|+|.++.+.. +|    ++.|+...      .+.|   ..++......-++.++..+. ....++. ...+-||.+|+
T Consensus         7 ivlvG~~~vGKT-sl----i~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           7 VIMVGSGGVGKS-AL----TLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             EEEECSTTSSHH-HH----HHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            889999998886 77    44443211      1112   23344555567888888753 2233333 35678999999


Q ss_pred             eeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      ++|.+..      ..|+   .|-.++++....+++|- +.|.+..|.
T Consensus        82 v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~pi-iivgnK~Dl  121 (168)
T d1u8za_          82 VFSITEM------ESFAATADFREQILRVKEDENVPF-LLVGNKSDL  121 (168)
T ss_dssp             EEETTCH------HHHHHHHHHHHHHHHHHCCTTSCE-EEEEECGGG
T ss_pred             Eeeccch------hhhhhHHHHHHHHHHhhCCCCCcE-EEEeccccc
Confidence            9998753      2233   34445555555567774 445677664

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.60  E-value=0.84  Score=41.30  Aligned_cols=101  Identities=9%  Similarity=0.055  Sum_probs=61.3

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCC----cceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGA----LSSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~----g~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADlVl  149 (795)
                      |+|||.++.+.. +|    +..|....      ...    ...++......-++.+...+.. +..+ ..-.++-||.+|
T Consensus         7 i~vvG~~~vGKT-sL----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           7 VVLIGDSGVGKS-NL----LSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             EEEESSTTSSHH-HH----HHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            889999998886 77    44442211      111    3344555544557777766521 2222 344578999999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+ ...+.+..++.++-+.  ++.|.+..|.
T Consensus        82 ~v~d~~~~------~S~~-~~~~~~~~i~~~~~~~~piilvgnK~Dl  121 (175)
T d2f9la1          82 LVYDIAKH------LTYE-NVERWLKELRDHADSNIVIMLVGNKSDL  121 (175)
T ss_dssp             EEEETTCH------HHHH-THHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEECCCc------ccch-hHHHHHHHHHHhcCCCCcEEEEEeeecc
Confidence            99999853      2233 3455667777776654  4555677775

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.68  Score=41.75  Aligned_cols=101  Identities=10%  Similarity=0.100  Sum_probs=57.8

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCC----cceEEEecCceeeEEEEeCCCC-ChHHHHHH-HhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGA----LSSTVSSSKYRLRTSVLQAPHG-DLVGCMEM-AKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~----g~~tv~~~r~k~Ritfie~~~~-dl~~~LD~-aKvADlVl  149 (795)
                      |+|+|.++.+.. +|    ++.|+...      .+.    ...++..+...-++.++.++.. ...++... .+=||.+|
T Consensus         8 i~lvG~~~vGKT-sL----i~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           8 IVLIGNAGVGKT-CL----VRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             EEEEESTTSSHH-HH----HHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            789999998886 77    44443221      111    2344555555567788887622 35555554 47899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+.. .+.+..+.....  +.++.|.++.|.
T Consensus        83 ~v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~  122 (171)
T d2ew1a1          83 LTYDITCE------ESFRCL-PEWLREIEQYASNKVITVLVGNKIDL  122 (171)
T ss_dssp             EEEETTCH------HHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             Eeeecccc------hhhhhh-hhhhhhhcccccccccEEEEEeeccc
Confidence            99998753      224332 233333333332  234445677774

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=1.2  Score=40.12  Aligned_cols=103  Identities=9%  Similarity=0.050  Sum_probs=56.7

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCC------CCC---cceEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhceEE
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGA---LSSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADLVA  149 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~---g~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADlVl  149 (795)
                      =|+|+|.++.+.. +|    +..|+...      .+.   ...++......-++.++..+. ....++ --..+-||.+|
T Consensus         8 Kv~lvG~~~vGKT-sL----i~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           8 KLVVVGGGGVGKS-AL----TIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             EEEEEECTTSSHH-HH----HHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             EEEEECCCCcCHH-HH----HHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            3889999998886 77    44433211      111   223444454456677777652 222222 23467899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+.-..-+..+++..+.+.  +|.|.++.|.
T Consensus        83 ~v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl  123 (173)
T d2fn4a1          83 LVFAINDR------QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL  123 (173)
T ss_dssp             EEEETTCH------HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred             eecccccc------cccchhhhhhHHHHHHhccCCCceEEEEEeech
Confidence            99999853      335433333333344444332  3455677774

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.93  E-value=0.77  Score=42.67  Aligned_cols=121  Identities=15%  Similarity=0.122  Sum_probs=63.5

Q ss_pred             EEEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEecCceeeEEEEeCCCCC-h--HHHHHHHhhhceEEEee
Q 003796           81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSKYRLRTSVLQAPHGD-L--VGCMEMAKVADLVAFVA  152 (795)
Q Consensus        81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~r~k~Ritfie~~~~d-l--~~~LD~aKvADlVll~i  152 (795)
                      -|+|+|+++++.. +|++.|+..-.......     +.+++. ......++++.++... +  ..+-....-||.+++|+
T Consensus         2 ~V~ivG~~~~GKT-sLl~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKT-LLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHH-HHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHH-HHHHHHHcCCCCcccCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            4899999999886 67333332110011111     222222 1234678888776332 2  23445568899999999


Q ss_pred             eCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc-chhhhHHHHHHHHh
Q 003796          153 SASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT-DLKKRKDLKKMCIS  208 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~  208 (795)
                      |++...     ..+......+.++|..    .+-+.++.|++..|. +.+.....++.+++
T Consensus        80 D~~d~~-----~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~  135 (207)
T d2fh5b1          80 DSAAFQ-----REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK  135 (207)
T ss_dssp             ETTTHH-----HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred             Eccccc-----ccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHH
Confidence            998420     1123333333344332    244556777788774 11223345555544

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.67  E-value=1.1  Score=46.77  Aligned_cols=143  Identities=11%  Similarity=0.065  Sum_probs=84.4

Q ss_pred             CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC---C---c--ceE-----EEecCceeeEEEEeCCC-----CChHHH
Q 003796           77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A---L--SST-----VSSSKYRLRTSVLQAPH-----GDLVGC  138 (795)
Q Consensus        77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~---g--~~t-----v~~~r~k~Ritfie~~~-----~dl~~~  138 (795)
                      .+|.-|+|+|-++.+.. ||    +..+.+....   .   |  +.|     ...+ ....++|+-.|-     .+....
T Consensus        54 ~~~l~Iai~G~~n~GKS-SL----iNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~  127 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKS-SF----INTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTY  127 (400)
T ss_dssp             HCCEEEEEEECTTSSHH-HH----HHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHH
T ss_pred             cCCcEEEEECCCCCCHH-HH----HHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHH
Confidence            45888999999998885 78    4444332211   0   1  111     2222 235688887763     244444


Q ss_pred             HHH--HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc--h------------hhhHHH
Q 003796          139 MEM--AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD--L------------KKRKDL  202 (795)
Q Consensus       139 LD~--aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~--~------------Kk~~~~  202 (795)
                      +.-  ++.+|++|++.|+.          |...-.++++.|+..|.| ++.|++..|..  .            +.....
T Consensus       128 ~~~~~~~~~d~~l~~~~~~----------~~~~d~~l~~~l~~~~k~-~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~i  196 (400)
T d1tq4a_         128 LEKMKFYEYDFFIIISATR----------FKKNDIDIAKAISMMKKE-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDI  196 (400)
T ss_dssp             HHHTTGGGCSEEEEEESSC----------CCHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred             HHHhhhhcceEEEEecCCC----------CCHHHHHHHHHHHHcCCC-EEEEEeCcccccchhhhcccccccHHHHHHHH
Confidence            433  44578888877755          666778999999999987 66677776631  0            111234


Q ss_pred             HHHHHhhcccccCCCCeeEEeCCH----HHHHHHHHHH
Q 003796          203 KKMCISSLTSEFPEDCKFYAADTK----DELHKFLWLF  236 (795)
Q Consensus       203 kK~lk~~f~~ef~~~~Klf~l~~~----~E~~nL~R~I  236 (795)
                      +..+...+...-.....+|-+|+.    -++..|...|
T Consensus       197 r~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l  234 (400)
T d1tq4a_         197 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL  234 (400)
T ss_dssp             HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHH
Confidence            445555555554456778888752    1445554444

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=1.8  Score=38.48  Aligned_cols=102  Identities=8%  Similarity=0.001  Sum_probs=58.2

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCCc---ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll  150 (795)
                      |+|+|.++.+.. +|    +..|+...      .+.+   ..++......-++.++..+. .....+. ...+-||.+|+
T Consensus         6 i~lvG~~~vGKT-sL----i~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           6 VVVLGSGGVGKS-AL----TVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             EEEECCTTSSHH-HH----HHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            889999998886 77    44443321      1112   33444455556777777653 2333333 35678999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~  194 (795)
                      ++|.+..      ..|+.-..-...+.+.++.+.  ++.|.+..|.
T Consensus        81 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl  120 (167)
T d1kaoa_          81 VYSLVNQ------QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL  120 (167)
T ss_dssp             EEETTCH------HHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred             eeeecch------hhhhhhhchhhhhhhhccCCCCCEEEEEEccch
Confidence            9999852      234433222223334444443  5666777774

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=1.7  Score=39.08  Aligned_cols=144  Identities=7%  Similarity=0.062  Sum_probs=73.7

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hc-cCCCCC----cceEEEecCceeeEEEEeCCC--CChHHHHHHHhhhceEEEeee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LS-SEGTGA----LSSTVSSSKYRLRTSVLQAPH--GDLVGCMEMAKVADLVAFVAS  153 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~-~~~~~~----g~~tv~~~r~k~Ritfie~~~--~dl~~~LD~aKvADlVll~id  153 (795)
                      |+|+|.++.+.. +|++.++.. +. .+..+.    ...++.......++.+...+.  ..-...-..++-||.+++++|
T Consensus         9 I~vvG~~~vGKS-Sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d   87 (174)
T d1wmsa_           9 VILLGDGGVGKS-SLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFS   87 (174)
T ss_dssp             EEEECCTTSSHH-HHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEE
T ss_pred             EEEECCCCCCHH-HHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEe
Confidence            889999998886 773333321 00 111111    222333344445555565542  122345566789999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCcchhh--hHHHHHHHHhhcccccCCCCeeEEeC----
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPTDLKK--RKDLKKMCISSLTSEFPEDCKFYAAD----  224 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~~~Kk--~~~~kK~lk~~f~~ef~~~~Klf~l~----  224 (795)
                      .+...   .-.....|-.++++..+..   ++| ++.|.+..|...+.  ..+.++..++..      ..+.|..|    
T Consensus        88 ~~~~~---s~~~~~~~~~~i~~~~~~~~~~~~p-iilVgnK~Dl~~~~v~~~~~~~~~~~~~------~~~~~e~Sak~~  157 (174)
T d1wmsa_          88 VDDSQ---SFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVSTEEAQAWCRDNG------DYPYFETSAKDA  157 (174)
T ss_dssp             TTCHH---HHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSCHHHHHHHHHHTT------CCCEEECCTTTC
T ss_pred             eeccc---ccchhhhHHHHHHHHhccccCCCce-EEEeccccchhhccCcHHHHHHHHHHcC------CCeEEEEcCCCC
Confidence            87530   0012233445566555443   555 66677877751111  223444444321      24566666    


Q ss_pred             -CHHHH-HHHHHHH
Q 003796          225 -TKDEL-HKFLWLF  236 (795)
Q Consensus       225 -~~~E~-~nL~R~I  236 (795)
                       +-.|+ ..|+|.|
T Consensus       158 ~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         158 TNVAAAFEEAVRRV  171 (174)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence             34554 4555655

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.66  E-value=2.2  Score=37.84  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=43.3

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCC----cceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGA----LSSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~----g~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVl  149 (795)
                      |+|+|.++.+.. +|    +..|+...      .+.    ...++..+..+-++.++..+..+ ...+ -...+-||.+|
T Consensus         5 i~vvG~~~vGKT-Sl----i~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   79 (166)
T d1g16a_           5 ILLIGDSGVGKS-CL----LVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   79 (166)
T ss_dssp             EEEEESTTSSHH-HH----HHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            789999998886 77    44443322      111    34455555556677778765211 1111 23468899999


Q ss_pred             EeeeCCC
Q 003796          150 FVASASS  156 (795)
Q Consensus       150 l~idas~  156 (795)
                      +++|.+.
T Consensus        80 ~v~d~~~   86 (166)
T d1g16a_          80 LVYDITD   86 (166)
T ss_dssp             EEEETTC
T ss_pred             EEEECCC
Confidence            9999985

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=2.6  Score=37.38  Aligned_cols=105  Identities=8%  Similarity=0.034  Sum_probs=55.4

Q ss_pred             EEEecCCCccChhhHHHHHHHhh--ccCCCCCc---ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEEEeeeC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQL--SSEGTGAL---SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVAFVASA  154 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~--~~~~~~~g---~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVll~ida  154 (795)
                      |+|+|.++.+.. +|++.|+..-  ..+..+.+   ...+.....+-.+.++.++... ...+ -...+-||.+++++|.
T Consensus         6 i~viG~~~vGKT-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~   84 (166)
T d1ctqa_           6 LVVVGAGGVGKS-ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAI   84 (166)
T ss_dssp             EEEEESTTSSHH-HHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEET
T ss_pred             EEEECCCCCCHH-HHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceeecc
Confidence            899999998876 7733333210  00111111   1222233345667777775322 2233 3457889999999999


Q ss_pred             CCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          155 SSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       155 s~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      +..      ..|+.--.-+-.+.+..   ++| ++.|.+..|.
T Consensus        85 ~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl  120 (166)
T d1ctqa_          85 NNT------KSFEDIHQYREQIKRVKDSDDVP-MVLVGNKCDL  120 (166)
T ss_dssp             TCH------HHHHTHHHHHHHHHHHHTCSSCC-EEEEEECTTC
T ss_pred             ccc------ccHHHHHHHHHHHHHhcCCCCCe-EEEEeccccc
Confidence            853      33443322222223333   344 5556777664

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.73  E-value=2.2  Score=37.66  Aligned_cols=100  Identities=9%  Similarity=0.105  Sum_probs=56.3

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCC----cceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGA----LSSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~----g~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVl  149 (795)
                      |+|+|.++.+.. +|    +..|....      .+.    ...++......-++.++..+. .....+.. ..+-||.+|
T Consensus         3 v~vvG~~~vGKT-sL----i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   77 (164)
T d1yzqa1           3 LVFLGEQSVGKT-SL----ITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAV   77 (164)
T ss_dssp             EEEEESTTSSHH-HH----HHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEE
Confidence            789999998886 77    44443222      111    223333333455667776643 33334443 588899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~  194 (795)
                      +++|.+..      ..|+.- .+.+..++.   ...| ++.|.+..|.
T Consensus        78 lv~d~~~~------~s~~~i-~~~~~~~~~~~~~~~~-iilvgnK~Dl  117 (164)
T d1yzqa1          78 VVYDITNV------NSFQQT-TKWIDDVRTERGSDVI-IMLVGNKTDL  117 (164)
T ss_dssp             EEEETTCH------HHHHTH-HHHHHHHHHHHTTSSE-EEEEEECTTC
T ss_pred             Eeeccccc------cchhhh-HhhHHHHHHhcCCCce-EEEEecccch
Confidence            99999853      224332 233333332   2333 6666788775

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=86.46  E-value=3.3  Score=35.64  Aligned_cols=142  Identities=13%  Similarity=0.046  Sum_probs=74.0

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC--C---C--cceEEEecCceeeEEEEeCCCCCh--HHHHHHHhhhceEEEee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT--G---A--LSSTVSSSKYRLRTSVLQAPHGDL--VGCMEMAKVADLVAFVA  152 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~--~---~--g~~tv~~~r~k~Ritfie~~~~dl--~~~LD~aKvADlVll~i  152 (795)
                      |+|+|+++++.. +|    +..|+....  .   .  ...++..  ....+.+...+....  .......+-||.+++++
T Consensus         3 ivlvG~~~vGKS-sL----i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           3 ILMVGLDAAGKT-TI----LYKLKLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             EEEECSTTSSHH-HH----HHHHHHHCSSCCCCCSSCCEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             EEEECCCCCCHH-HH----HHHHhcCCCCccccceeeEEEEEee--eeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            679999998886 77    444432221  1   1  2233332  345666666653222  33445668899999999


Q ss_pred             eCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeCC--HH
Q 003796          153 SASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADT--KD  227 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~  227 (795)
                      |.+.-      ..|+.....++.++...+..  .++.|.+..|. +.....++.......+-.  ..+..+|..|.  -.
T Consensus        76 d~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~SAktg~  147 (160)
T d1r8sa_          76 DSNDR------ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR--HRNWYIQATCATSGD  147 (160)
T ss_dssp             ETTCG------GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS--SCCEEEEECBTTTTB
T ss_pred             EecCh------HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHh--hCCCEEEEeECCCCC
Confidence            98742      33555555666666555543  33444554443 111222333322222222  22567887773  23


Q ss_pred             HHHHHHHHHhh
Q 003796          228 ELHKFLWLFKE  238 (795)
Q Consensus       228 E~~nL~R~Is~  238 (795)
                      -+..+...|+.
T Consensus       148 gi~e~~~~l~~  158 (160)
T d1r8sa_         148 GLYEGLDWLSN  158 (160)
T ss_dssp             THHHHHHHHHH
T ss_pred             CHHHHHHHHHh
Confidence            34455555543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=4.4  Score=35.75  Aligned_cols=105  Identities=8%  Similarity=0.021  Sum_probs=57.9

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hcc-CCCCC----cceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEeee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LSS-EGTGA----LSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVAS  153 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~~-~~~~~----g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~id  153 (795)
                      |+|+|.++.+.+ +|++.++.. +.. +....    ...++..+...-++.++..+. ....++. -..+-||.+|+++|
T Consensus         7 ivlvG~~~vGKT-sli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   85 (166)
T d1z0fa1           7 YIIIGDMGVGKS-CLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   85 (166)
T ss_dssp             EEEECSTTSSHH-HHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEE
T ss_pred             EEEECCCCcCHH-HHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEec
Confidence            789999998886 773333321 111 11111    444555555556888888763 2333444 34678999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~  194 (795)
                      .+..      ..|+ .....+..++....+.  ++.|.+..|.
T Consensus        86 ~~~~------~s~~-~~~~~~~~~~~~~~~~~~iilvgnK~Dl  121 (166)
T d1z0fa1          86 ITRR------STYN-HLSSWLTDARNLTNPNTVIILIGNKADL  121 (166)
T ss_dssp             TTCH------HHHH-THHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             cCch------HHHH-HHHHHHHHHHhhccccceEEEEcccccc
Confidence            8742      2233 2334444454444433  3333566664

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.95  E-value=2.5  Score=37.52  Aligned_cols=70  Identities=11%  Similarity=0.076  Sum_probs=42.0

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCCc---ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL---SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g---~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVll  150 (795)
                      |+|+|.++.+.. +|    +..|+...      .+.|   ...+......-.+.+...+..+ ... ..-..+-||.+||
T Consensus         5 i~viG~~~vGKT-sL----i~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           5 VAVFGAGGVGKS-SL----VLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             EEEECCTTSSHH-HH----HHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             EEEECCCCCCHH-HH----HHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            789999998876 67    44443221      1112   1233344444566667665322 233 3345788999999


Q ss_pred             eeeCCC
Q 003796          151 VASASS  156 (795)
Q Consensus       151 ~idas~  156 (795)
                      ++|.+.
T Consensus        80 v~d~~~   85 (171)
T d2erxa1          80 VYSITS   85 (171)
T ss_dssp             EEETTC
T ss_pred             Eeeccc
Confidence            999874

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.86  E-value=1.4  Score=39.19  Aligned_cols=104  Identities=11%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             EEEecCCCccChhhHHHHHHHh-hcc-CCCCCc----ceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEEEeee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-LSS-EGTGAL----SSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVAS  153 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~~~-~~~~~g----~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVll~id  153 (795)
                      |+|+|.++.+.. +|++.++.. +.. +..+.|    ..++......-.+.++..+. ..... .-...+-||.+++++|
T Consensus         5 v~liG~~~vGKS-sLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d   83 (164)
T d1z2aa1           5 MVVVGNGAVGKS-SMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFS   83 (164)
T ss_dssp             EEEECSTTSSHH-HHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEE
T ss_pred             EEEECCCCcCHH-HHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEe
Confidence            789999998886 773333321 111 111112    22333333344555555431 11111 2345788999999999


Q ss_pred             CCCccccccccccChHHHHHHHHHHh--cCCCceEEEeccCCc
Q 003796          154 ASSFSEESMSYYIDSFGNQCLSVFRS--LGLPSTAVLIRDLPT  194 (795)
Q Consensus       154 as~g~~~~~~~~fe~eg~e~L~~l~a--qG~P~vigVl~~Ld~  194 (795)
                      .+..      ..|+.- ...+..+..  .+.| ++.|.++.|.
T Consensus        84 ~~~~------~s~~~~-~~~~~~i~~~~~~~~-iilVgnK~Dl  118 (164)
T d1z2aa1          84 TTDR------ESFEAI-SSWREKVVAEVGDIP-TALVQNKIDL  118 (164)
T ss_dssp             TTCH------HHHHTH-HHHHHHHHHHHCSCC-EEEEEECGGG
T ss_pred             ccch------hhhhhc-ccccccccccCCCce-EEEeeccCCc
Confidence            9853      234432 223333333  3555 5667788885

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=85.75  E-value=2.1  Score=38.25  Aligned_cols=145  Identities=11%  Similarity=0.075  Sum_probs=77.4

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEEEe
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAFV  151 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVll~  151 (795)
                      .+=|+++|+++.+.. +|    +..|+......     |............+.++.++. .....+.. ..+-||.+|++
T Consensus        12 ~~kIvlvG~~~vGKT-Sl----i~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          12 EMRILMLGLDAAGKT-TI----LYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CEEEEEEEETTSSHH-HH----HHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHH-HH----HHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            345889999999886 77    66665433211     222222222245777777762 22334333 67789999999


Q ss_pred             eeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc-chhhhHHHHHHHH-hhcccccCCCCeeEEeCCH-
Q 003796          152 ASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT-DLKKRKDLKKMCI-SSLTSEFPEDCKFYAADTK-  226 (795)
Q Consensus       152 idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~-~~Kk~~~~kK~lk-~~f~~ef~~~~Klf~l~~~-  226 (795)
                      +|++.-      ..|+..-.++...++.+..  +.++.|.+..|. +......+.+.+. ..+..   .+..+|..|.. 
T Consensus        87 ~D~s~~------~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~---~~~~~~e~SA~t  157 (173)
T d1e0sa_          87 VDCADR------DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD---RNWYVQPSCATS  157 (173)
T ss_dssp             EETTCG------GGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS---SCEEEEECBTTT
T ss_pred             Eecccc------hhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHh---CCCEEEEeeCCC
Confidence            999852      2355555666666665433  234455666664 1112233444432 11111   13456667632 


Q ss_pred             -HHHHHHHHHHh
Q 003796          227 -DELHKFLWLFK  237 (795)
Q Consensus       227 -~E~~nL~R~Is  237 (795)
                       .-+..+...|+
T Consensus       158 g~gv~e~~~~l~  169 (173)
T d1e0sa_         158 GDGLYEGLTWLT  169 (173)
T ss_dssp             TBTHHHHHHHHH
T ss_pred             CcCHHHHHHHHH
Confidence             22444555554

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=85.63  E-value=1.1  Score=40.56  Aligned_cols=136  Identities=11%  Similarity=0.041  Sum_probs=71.2

Q ss_pred             CCCCEEEEEecCCCccChhhHHHHHHHhhccCC-----CCCcceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceE
Q 003796           76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGALSSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLV  148 (795)
Q Consensus        76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~g~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlV  148 (795)
                      ...-+=|+++|+++++.+ +|    +..|+...     .+.|...........++.++..+.. .+.++.. ..+-||.+
T Consensus        14 ~~k~~KI~lvG~~~vGKT-sL----i~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKT-TI----LYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHH-HH----HHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHH-HH----HHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeE
Confidence            334566889999999886 77    66664322     1113333222223467777776532 2233333 45679999


Q ss_pred             EEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCcch-hhhHHHHHHHHhhcccccCCCCeeEEeC
Q 003796          149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPTDL-KKRKDLKKMCISSLTSEFPEDCKFYAAD  224 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~~~-Kk~~~~kK~lk~~f~~ef~~~~Klf~l~  224 (795)
                      ++++|++..      ..|+..-.++..+++....  +.++.|.+..|... ....++.+.+...+-.  ..+..+|..|
T Consensus        89 i~v~d~~d~------~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~--~~~~~~~e~S  159 (182)
T d1moza_          89 IFVVDSTDK------DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK--DRSWSIVASS  159 (182)
T ss_dssp             EEEEETTCT------TTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC--SSCEEEEEEB
T ss_pred             EEEeeeccc------ccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHh--hCCCEEEEEE
Confidence            999998843      3344444444455554433  23455567777411 1223344433211111  1235677777

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.56  E-value=2.8  Score=37.33  Aligned_cols=106  Identities=6%  Similarity=0.025  Sum_probs=54.3

Q ss_pred             EEEecCCCccChhhHHHHHHHh-h-ccCCCCC-----cceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEEEee
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-L-SSEGTGA-----LSSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAFVA  152 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~-~~~~~~~-----g~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVll~i  152 (795)
                      |+|+|.++.+.. +|++.++.. + .....+.     ...++......-++.|+..+- ....++.. .++-||.+++++
T Consensus         9 i~vvG~~~vGKT-sli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~   87 (170)
T d2g6ba1           9 VMLVGDSGVGKT-CLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLY   87 (170)
T ss_dssp             EEEECSTTSSHH-HHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEE
T ss_pred             EEEECCCCcCHH-HHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEe
Confidence            899999998886 773333321 0 0111111     233344444455777887652 23444444 368899999999


Q ss_pred             eCCCccccccccccChHHHHHHHHHHhcCCC-ceEEEeccCCc
Q 003796          153 SASSFSEESMSYYIDSFGNQCLSVFRSLGLP-STAVLIRDLPT  194 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~e~L~~l~aqG~P-~vigVl~~Ld~  194 (795)
                      |.+..      ..|+.....+..++...+-+ .++.|.++.|.
T Consensus        88 d~~~~------~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~  124 (170)
T d2g6ba1          88 DVTNK------ASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS  124 (170)
T ss_dssp             ETTCH------HHHHTHHHHHHHHHHHSCTTCEEEEEEECCST
T ss_pred             cCCcc------cchhhhhhhhhhhhhccCCCceEEEEEeeech
Confidence            98742      22333333333444555443 33444566664

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=3.3  Score=36.81  Aligned_cols=105  Identities=10%  Similarity=0.112  Sum_probs=55.4

Q ss_pred             EEEecCCCccChhhHHHHHHHh-h-ccCCCCC---cceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEeeeC
Q 003796           82 IVLFGLSASVNLNSVREDLLRQ-L-SSEGTGA---LSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVASA  154 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~-~-~~~~~~~---g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~ida  154 (795)
                      |+|+|.++.+.. +|++.++.. + ..+..+.   ...++......-++.++..+. .+..++. -..+-||.+|+++|.
T Consensus         8 i~lvG~~~vGKT-sLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~   86 (171)
T d2erya1           8 LVVVGGGGVGKS-ALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSV   86 (171)
T ss_dssp             EEEEECTTSSHH-HHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEET
T ss_pred             EEEECCCCCCHH-HHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEeecc
Confidence            889999998876 773332321 1 1111111   233344444455777777652 2233332 456889999999998


Q ss_pred             CCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          155 SSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       155 s~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +..      ..|+.   +-.+++........| +|.|.+..|.
T Consensus        87 ~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilvgnK~Dl  122 (171)
T d2erya1          87 TDR------GSFEEIYKFQRQILRVKDRDEFP-MILIGNKADL  122 (171)
T ss_dssp             TCH------HHHHTHHHHHHHHHHHHTSSCCS-EEEEEECTTC
T ss_pred             ccc------cchhhHHHHhHHHHhhcccCCCC-EEEEEeccch
Confidence            742      22332   333444443333444 3455677664

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=2.3  Score=38.08  Aligned_cols=101  Identities=8%  Similarity=0.018  Sum_probs=52.9

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC--C----CC----cceEEEecCceeeEEEEeCCCCCh-HH-HHHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG--T----GA----LSSTVSSSKYRLRTSVLQAPHGDL-VG-CMEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~--~----~~----g~~tv~~~r~k~Ritfie~~~~dl-~~-~LD~aKvADlVl  149 (795)
                      |+|||.++.+.. +|    +..|....  .    ..    .............+.++..+.... .+ .-...+-||.+|
T Consensus         6 ivvvG~~~vGKT-sl----i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           6 YIIIGDTGVGKS-CL----LLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             EEEESSTTSSHH-HH----HHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            789999998886 77    44443221  1    11    222233333345666666542111 11 233467899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~  194 (795)
                      +++|...-      ..|+.-. ..+..+...+-+.  ++.|.++.|.
T Consensus        81 lv~d~~~~------~sf~~~~-~~~~~~~~~~~~~~piilv~nK~D~  120 (173)
T d2a5ja1          81 LVYDITRR------ETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDL  120 (173)
T ss_dssp             EEEETTCH------HHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEeecCh------HHHHhHH-HHHHHHHHhCCCCCeEEEEecCCch
Confidence            99998742      2344333 3333333332222  4555677775

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=84.86  E-value=1.5  Score=39.59  Aligned_cols=139  Identities=12%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCCC----cc------eEEEecCceeeEEEEeCCCC----------ChHHHHHH
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----LS------STVSSSKYRLRTSVLQAPHG----------DLVGCMEM  141 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g~------~tv~~~r~k~Ritfie~~~~----------dl~~~LD~  141 (795)
                      |||+|+++.+.+ +|    +..+++.+...    +.      ....... .+.++|+-.| .          -....+..
T Consensus         4 VaiiG~~nvGKS-SL----in~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~Dtp-G~~~~~~~~~~~~~~~l~~   76 (185)
T d1lnza2           4 VGLVGFPSVGKS-TL----LSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLP-GLIEGAHQGVGLGHQFLRH   76 (185)
T ss_dssp             EEEESSTTSSHH-HH----HHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHH-HHHHHTTCTTTTHHHHHHH
T ss_pred             EEEECCCCCCHH-HH----HHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCC-CcccCchHHHHHHHHHHHH
Confidence            899999999886 78    66666544211    11      1111121 2467777665 2          12356677


Q ss_pred             HhhhceEEEeeeCCCccccccccccC-hHHHH---HHHHHHhcCCC--ceEEEeccCCcchhhhHHHHHHHHhhcccccC
Q 003796          142 AKVADLVAFVASASSFSEESMSYYID-SFGNQ---CLSVFRSLGLP--STAVLIRDLPTDLKKRKDLKKMCISSLTSEFP  215 (795)
Q Consensus       142 aKvADlVll~idas~g~~~~~~~~fe-~eg~e---~L~~l~aqG~P--~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~  215 (795)
                      ..-||+++.+++...-      ...+ .+...   .+..+...++.  .+|.|++..|.  .........++..    +.
T Consensus        77 ~~~~~~i~~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl--~~~~~~~~~~~~~----~~  144 (185)
T d1lnza2          77 IERTRVIVHVIDMSGL------EGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM--PEAAENLEAFKEK----LT  144 (185)
T ss_dssp             HHHCCEEEEEEESSCS------SCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS--TTHHHHHHHHHHH----CC
T ss_pred             HHHhhhhhheeeeccc------ccchhhhhhhhhhhccchhhhhccCCcchhhccccch--HhHHHHHHHHHHH----hc
Confidence            7779999888876632      1111 12222   22222222222  24667888885  2222223334433    34


Q ss_pred             CCCeeEEeCCH--HHHHHHHHHHhhc
Q 003796          216 EDCKFYAADTK--DELHKFLWLFKEQ  239 (795)
Q Consensus       216 ~~~Klf~l~~~--~E~~nL~R~Is~~  239 (795)
                      .+.++|.+|..  .-+..|++.|+..
T Consensus       145 ~~~~v~~iSA~~g~Gi~~L~~~i~~~  170 (185)
T d1lnza2         145 DDYPVFPISAVTREGLRELLFEVANQ  170 (185)
T ss_dssp             SCCCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            56788888842  2244555555543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.60  E-value=3.2  Score=36.49  Aligned_cols=101  Identities=11%  Similarity=0.148  Sum_probs=54.1

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC-----C-CC----cceEEEecCceeeEEEEeCCCCChHH--HHH-HHhhhceE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG-----T-GA----LSSTVSSSKYRLRTSVLQAPHGDLVG--CME-MAKVADLV  148 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~-~~----g~~tv~~~r~k~Ritfie~~~~dl~~--~LD-~aKvADlV  148 (795)
                      |+|+|.++.+.. +|    +..|....     . +.    ...++........+.++..+......  ..+ ..+-||.+
T Consensus         5 v~liG~~~vGKT-sL----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   79 (165)
T d1z06a1           5 IIVIGDSNVGKT-CL----TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   79 (165)
T ss_dssp             EEEECCTTSSHH-HH----HHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCce
Confidence            889999998886 77    44443211     1 11    22333334444566666665222221  233 35789999


Q ss_pred             EEeeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      |||+|.+..      +.|+.   +-.+++..+...++| ++.|.+..|.
T Consensus        80 ilv~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-i~lvgnK~Dl  121 (165)
T d1z06a1          80 VFVYDMTNM------ASFHSLPAWIEECKQHLLANDIP-RILVGNKCDL  121 (165)
T ss_dssp             EEEEETTCH------HHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTC
T ss_pred             EEEEEeehh------hhhhhhhhhhHHHHhhccCCCCe-EEEEeccccc
Confidence            999998852      23443   222333322233444 4445677775

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=84.45  E-value=7.4  Score=33.35  Aligned_cols=145  Identities=11%  Similarity=0.043  Sum_probs=74.7

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCC-----CcceEEEecCceeeEEEEeCCC--CChHHHHHHHhhhceEEEee
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----ALSSTVSSSKYRLRTSVLQAPH--GDLVGCMEMAKVADLVAFVA  152 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~g~~tv~~~r~k~Ritfie~~~--~dl~~~LD~aKvADlVll~i  152 (795)
                      .=|++||.++.+.. +|    ++.|+.....     .+............+.+...+.  ............+|.+++++
T Consensus         6 ~kI~ivG~~~vGKS-SL----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T d1upta_           6 MRILILGLDGAGKT-TI----LYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV   80 (169)
T ss_dssp             EEEEEECSTTSSHH-HH----HHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred             eEEEEECCCCCCHH-HH----HHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence            34899999998886 78    5555433221     1443333332334555555542  22223335567789999999


Q ss_pred             eCCCccccccccccChHHHHHHHHHH--hcCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeCC----
Q 003796          153 SASSFSEESMSYYIDSFGNQCLSVFR--SLGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAADT----  225 (795)
Q Consensus       153 das~g~~~~~~~~fe~eg~e~L~~l~--aqG~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l~~----  225 (795)
                      |....      ..++.....++..++  .++.+.++.|.+..|.... ...++.+.+...+-.  ..+..+|..|.    
T Consensus        81 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~--~~~~~~~~~SA~~g~  152 (169)
T d1upta_          81 DSCDR------DRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK--DRKWQIFKTSATKGT  152 (169)
T ss_dssp             ETTCC------TTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCT--TSCEEEEECCTTTCT
T ss_pred             hhhhc------chhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHh--cCCCEEEEEeCCCCC
Confidence            87642      224444444555553  3445556666666664111 122344443322222  22467787773    


Q ss_pred             -HHHHH-HHHHHHh
Q 003796          226 -KDELH-KFLWLFK  237 (795)
Q Consensus       226 -~~E~~-nL~R~Is  237 (795)
                       -.|+. .|++.|.
T Consensus       153 gv~e~~~~l~~~l~  166 (169)
T d1upta_         153 GLDEAMEWLVETLK  166 (169)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence             44433 4555543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=83.49  E-value=3.9  Score=36.04  Aligned_cols=142  Identities=9%  Similarity=-0.002  Sum_probs=73.1

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCC-----C--cceEEEecCceeeEEEEeCCC--CChHHHHHHHhhhceEEE
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----A--LSSTVSSSKYRLRTSVLQAPH--GDLVGCMEMAKVADLVAF  150 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~--g~~tv~~~r~k~Ritfie~~~--~dl~~~LD~aKvADlVll  150 (795)
                      +=|+|+|.++++.+ +|    +..+......     .  .-.++..  ...++.+...+.  ..-.......+.+|.+++
T Consensus        16 ~kI~vvG~~~~GKS-sL----i~rl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          16 HKVIIVGLDNAGKT-TI----LYQFSMNEVVHTSPTIGSNVEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             EEEEEEESTTSSHH-HH----HHHHHTTSCEEEECCSCSSCEEEEE--TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             EEEEEECCCCCCHH-HH----HHHHhcCCCCccccccceeEEEEee--cceEEEEeccccccccccchhhhhccceeeee
Confidence            45889999999886 77    4444332211     1  2233332  235666666542  222344556788999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHH---HHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeCC-
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSV---FRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADT-  225 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~---l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~-  225 (795)
                      ++|++.-      ..|+....+...+   ...++.| ++.|.+..|. .........+.++.-  .....+..+|.+|. 
T Consensus        89 v~d~~d~------~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~i~~~~~~~--~~~~~~~~~~~~Sa~  159 (177)
T d1zj6a1          89 VVDSTDR------ERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTVAEISQFLKLT--SIKDHQWHIQACCAL  159 (177)
T ss_dssp             EEETTCT------TTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCCHHHHHHHHTGG--GCCSSCEEEEECBTT
T ss_pred             ecccccc------cchhhhhhhhhhhhhcccccceE-EEEEEEcccccccCcHHHHHHHHHHH--hhHhcCCEEEEEeCC
Confidence            9998842      2344333333323   2334555 5556676663 112223344444322  22234567887773 


Q ss_pred             -HHHHHHHHHHHh
Q 003796          226 -KDELHKFLWLFK  237 (795)
Q Consensus       226 -~~E~~nL~R~Is  237 (795)
                       -.-+..+...|+
T Consensus       160 tg~Gi~e~~~~L~  172 (177)
T d1zj6a1         160 TGEGLCQGLEWMM  172 (177)
T ss_dssp             TTBTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
Confidence             233444544444

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.40  E-value=4.5  Score=36.49  Aligned_cols=73  Identities=15%  Similarity=0.032  Sum_probs=41.9

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCCCC-c---ceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCC
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-L---SSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASAS  155 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-g---~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas  155 (795)
                      +=|+|+|.++.+.. +|++.++..-....... +   ..++......-++.+...+ +....  ...+-||.+|||+|.+
T Consensus         6 ~ki~vlG~~~vGKT-sLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~-g~~~~--~~~~~ad~~ilVfd~~   81 (175)
T d2bmja1           6 LRLGVLGDARSGKS-SLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA-GAPDA--KFSGWADAVIFVFSLE   81 (175)
T ss_dssp             EEEEEECCTTTTHH-HHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECS-SCCCH--HHHHHCSEEEEEEETT
T ss_pred             EEEEEECCCCCCHH-HHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecc-ccccc--ccccccceeEEEeecc
Confidence            33999999998876 67333222110111111 1   1223344445677777775 43332  2467799999999988


Q ss_pred             C
Q 003796          156 S  156 (795)
Q Consensus       156 ~  156 (795)
                      .
T Consensus        82 ~   82 (175)
T d2bmja1          82 D   82 (175)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.32  E-value=3.3  Score=36.96  Aligned_cols=107  Identities=12%  Similarity=0.052  Sum_probs=61.0

Q ss_pred             CEEEEEecCCCccChhhHHHHHHHhhccCC------CCCc---ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhce
Q 003796           79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADL  147 (795)
Q Consensus        79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADl  147 (795)
                      -+=|+++|.++++.. +|    ++.|....      .+.+   ..++........+.++..+. ....++. ...+-||.
T Consensus         4 t~Ki~lvG~~~vGKT-sl----l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   78 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKS-AL----TIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   78 (169)
T ss_dssp             EEEEEEECCTTSSHH-HH----HHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cEEEEEECCCCcCHH-HH----HHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccE
Confidence            344889999998876 77    44443211      1111   22233455567788888753 2232333 35788999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT  194 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~  194 (795)
                      +||++|.+..   +....+..|-.++++.....++|-| .|.+..|.
T Consensus        79 ~llv~d~~d~---~Sf~~~~~~~~~i~~~~~~~~~p~i-lvgnK~Dl  121 (169)
T d1x1ra1          79 FLIVYSVTDK---ASFEHVDRFHQLILRVKDRESFPMI-LVANKVDL  121 (169)
T ss_dssp             EEEEEETTCH---HHHHTHHHHHHHHHHHHTSSCCCEE-EEEECTTC
T ss_pred             EEEecccccc---hhhhccchhhHHHHhhccccCccEE-EEecccch
Confidence            9999999853   1101123455555555555666644 44577774

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.97  E-value=3.7  Score=36.74  Aligned_cols=90  Identities=12%  Similarity=0.044  Sum_probs=52.5

Q ss_pred             EEEEEecCCCccChhhHHHHHHHhhccCCC--C----C----cceEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhce
Q 003796           80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT--G----A----LSSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADL  147 (795)
Q Consensus        80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~--~----~----g~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADl  147 (795)
                      +=|+|+|.++.+.. +|    ++.|.....  .    .    ...++..+....++.++..+. .+..++ -..++-||.
T Consensus         8 iKi~vvG~~~vGKT-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           8 LKILIIGESGVGKS-SL----LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             EEEEEECSTTSSHH-HH----HHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             eEEEEECCCCcCHH-HH----HHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            33899999998886 67    554432211  1    1    333445555556788887652 122222 245788999


Q ss_pred             EEEeeeCCCccccccccccChHHHHHHHHHHhcC
Q 003796          148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG  181 (795)
Q Consensus       148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG  181 (795)
                      +|+++|.+..      ..|+ .-...+..+..++
T Consensus        83 ii~v~d~~~~------~s~~-~~~~~~~~i~~~~  109 (177)
T d1x3sa1          83 VILVYDVTRR------DTFV-KLDNWLNELETYC  109 (177)
T ss_dssp             EEEEEETTCH------HHHH-THHHHHHHHTTCC
T ss_pred             EEEEEECCCc------cccc-cchhhhhhhcccc
Confidence            9999998752      2233 2344555555543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.84  E-value=1.4  Score=40.52  Aligned_cols=101  Identities=9%  Similarity=0.027  Sum_probs=56.4

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC--C---C-C----cceEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG--T---G-A----LSSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~--~---~-~----g~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADlVl  149 (795)
                      |+|+|.++.+.. +|    +..|....  .   . .    ...++......-.+.++.++- .++.++ -...+=||.+|
T Consensus         9 ivvvG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           9 LLLIGNSGVGKS-CL----LLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             EEEEESTTSSHH-HH----HHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            789999998886 67    44443211  1   1 1    233455555566788887752 223332 23457799999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCCCce--EEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPST--AVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~v--igVl~~Ld~  194 (795)
                      +|+|.+..      ..|+ +..+....++.+..+.+  +.|.+..|.
T Consensus        84 ~v~d~t~~------~s~~-~~~~~~~~~~~~~~~~~~iilv~nK~D~  123 (194)
T d2bcgy1          84 IVYDVTDQ------ESFN-GVKMWLQEIDRYATSTVLKLLVGNKCDL  123 (194)
T ss_dssp             EEEETTCH------HHHH-HHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEeCcch------hhhh-hHhhhhhhhhhcccCCceEEEEEecccc
Confidence            99999853      2233 34444444544444432  333455443

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.81  E-value=2.6  Score=37.60  Aligned_cols=70  Identities=13%  Similarity=0.044  Sum_probs=41.5

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCCC----C-c---ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEe
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGTG----A-L---SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFV  151 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----~-g---~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~  151 (795)
                      |+|+|.++.+.. +|    ++.|......    . +   ..++......-++.++.++.. ...++.+ ..+-||.+|||
T Consensus         4 i~lvG~~~vGKT-sL----i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           4 VLLLGAPGVGKS-AL----ARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             EEEECCTTSSHH-HH----HHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            789999998876 67    5555432211    1 1   123444555678888887632 2333333 45789999999


Q ss_pred             eeCCC
Q 003796          152 ASASS  156 (795)
Q Consensus       152 idas~  156 (795)
                      +|.+.
T Consensus        79 ~d~t~   83 (168)
T d2gjsa1          79 YSVTD   83 (168)
T ss_dssp             EETTC
T ss_pred             ccccc
Confidence            99884

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.49  E-value=2.2  Score=38.02  Aligned_cols=101  Identities=11%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC------CCCcc----eEEE-ecCceeeEEEEeCCC-CChH-HHHHHHhhhceE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGALS----STVS-SSKYRLRTSVLQAPH-GDLV-GCMEMAKVADLV  148 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~----~tv~-~~r~k~Ritfie~~~-~dl~-~~LD~aKvADlV  148 (795)
                      |+|+|.++.+.. +|    +..|+...      .+.+.    .+.. .+.....+.+...+. .... ......+-||.+
T Consensus         5 i~~vG~~~vGKS-sL----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   79 (175)
T d1ky3a_           5 VIILGDSGVGKT-SL----MHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC   79 (175)
T ss_dssp             EEEECCTTSSHH-HH----HHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceE
Confidence            789999998875 77    44443211      11111    1111 122223344444331 1222 223357899999


Q ss_pred             EEeeeCCCccccccccccCh---HHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796          149 AFVASASSFSEESMSYYIDS---FGNQCLSVFRSL---GLPSTAVLIRDLPT  194 (795)
Q Consensus       149 ll~idas~g~~~~~~~~fe~---eg~e~L~~l~aq---G~P~vigVl~~Ld~  194 (795)
                      ||++|++..      ..|+.   |-.+++......   ++| ++.|.+..|.
T Consensus        80 ilv~d~~~~------~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~nK~Dl  124 (175)
T d1ky3a_          80 VLVYDVTNA------SSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDA  124 (175)
T ss_dssp             EEEEETTCH------HHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTS
T ss_pred             EEEeecccc------cccchhhhcchhhhhhhhhcccccCc-EEEEecccch
Confidence            999999753      22432   333444443332   444 5667888885

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.94  E-value=1.8  Score=39.30  Aligned_cols=105  Identities=12%  Similarity=0.067  Sum_probs=56.8

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCCC------CCcc----eEEEecCceeeEEEEeCCC-CC-hHHHHHHHhhhceEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GALS----STVSSSKYRLRTSVLQAPH-GD-LVGCMEMAKVADLVA  149 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~----~tv~~~r~k~Ritfie~~~-~d-l~~~LD~aKvADlVl  149 (795)
                      |+|+|.++++.. +|    +..|+....      +.|+    .++......-.+.+...+. .. -...-...+-||.+|
T Consensus         5 v~vvG~~~vGKS-SL----i~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (184)
T d1vg8a_           5 VIILGDSGVGKT-SL----MNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   79 (184)
T ss_dssp             EEEECCTTSSHH-HH----HHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEE
Confidence            789999998886 77    554443221      1122    2333333445667776642 11 112234467899999


Q ss_pred             EeeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796          150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT  194 (795)
Q Consensus       150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~  194 (795)
                      +++|.+...   ....+..+-.+++......+...  ++.|.+..|.
T Consensus        80 ~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl  123 (184)
T d1vg8a_          80 LVFDVTAPN---TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL  123 (184)
T ss_dssp             EEEETTCHH---HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTS
T ss_pred             Eeecccchh---hhhcchhhHHHHHHHhccccccCCCEEEEEEeecc
Confidence            999997530   00112334445555554443322  3555677774

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.71  E-value=4.1  Score=36.35  Aligned_cols=101  Identities=10%  Similarity=0.076  Sum_probs=57.7

Q ss_pred             EEEecCCCccChhhHHHHHHHhhccCC-C----CC-c---ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEE
Q 003796           82 IVLFGLSASVNLNSVREDLLRQLSSEG-T----GA-L---SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAF  150 (795)
Q Consensus        82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~-~----~~-g---~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll  150 (795)
                      |+|+|.++.+.. +|    +..|+... .    .. +   ..++......-.+.++.++.. ....+.. ..+-||.+||
T Consensus         5 ivvvG~~~vGKT-sL----i~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   79 (177)
T d1kmqa_           5 LVIVGDGACGKT-CL----LIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM   79 (177)
T ss_dssp             EEEEESTTSSHH-HH----HHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             EEEECCCCcCHH-HH----HHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhh
Confidence            678999998876 77    44443222 1    11 2   122334444567888877532 2333333 3567999999


Q ss_pred             eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796          151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT  194 (795)
Q Consensus       151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~  194 (795)
                      ++|.+..      ..|+..-...+..+...  ++| ++.|.++.|.
T Consensus        80 v~d~~~~------~Sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl  118 (177)
T d1kmqa_          80 CFSIDSP------DSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL  118 (177)
T ss_dssp             EEETTCH------HHHHHHHHTHHHHHHHHSTTSC-EEEEEECGGG
T ss_pred             hcccchh------HHHHHHHHHHHHHHHHhCCCCc-eEEeeecccc
Confidence            9999853      33554444445555544  455 4445677774