Citrus Sinensis ID: 003896

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------79
MSRLGYKNIVYHGDVCLGELDTILVSDENFQFPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQKKFPCFWCYSVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASGMSAELKRYMDDRTLLKQYTENDCVMDNGKVFKVQQEEVPPPSENHERIVRPVIRIPERNLVLTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAPDVSNYLMSEDANFAPNGSTNAPMSEGLNGLEVERRLNQSDEKYVVDSGLPSMKNSSDLKSETSLLPVAVASNATVPATVVPSQKPGLLGAPIRRDNSSMKHGFDLRNQNSAQPPLPKLHGQGGWIVEEEVNRVLPNNRPVSIATGLPSHASQAKGEEAIMAHDLHKQNLPPASQPPEIGVSQNHVSSNSREFLTEGGKTNLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYVAYITPRSGAMDRDFDKLSLENENGFLWDTIISESNEGLREDGLRKESTPEASEVEPGSTYASLGNQQVQKRPNVPKLSKLIPSKRLKDEPPQT
cccccEEEEEEEccEEEEEEEEEEccccccccccccEEEEECccccccccccccccccccccEEEEccccccccccHHHHHHHHHcccccEEEEEEccEEEEEEEcccccccccEEEEEEccccHHHHHHHHHccccEEEEEEccHHHHHHcccccHHHHHHHHHHHHHccccHHHHcccHHHHHHHHcHHHHHHHHccccccccccEEEEEcccccccccccccccccccccccccccccEEccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcccccccccEEEEEEcccccccccccccEEEEcccccccccHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEcccccccccEEEEEEEccCEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccc
***LGYKNIVYHGDVCLGELDTILVSDENFQFPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQKKFPCFWCYSVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE************LKRYMDDRTLLKQYTENDCVMDNGKVFKVQQEEVP********IVRPVIRIPERNLVLTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAP*************************************************************************************************************************GGWIVEEEVNRVL***************************************************************KTNLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTR******AAENALHYLAEKYVAYITPRSGAMDRDFDKLSL**E***********************************************************************
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MSRLGYKNIVYHGDVCLGELDTILVSDENFQFPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQKKFPCFWCYSVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASGMSAELKRYMDDRTLLKQYTENDCVMDNGKVFKVQQEEVPPPSENHERIVRPVIRIPERNLVLTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAPDVSNYLMSEDANFAPNGSTNAPMSEGLNGLEVERRLNQSDEKYVVDSGLPSMKNSSDLKSETSLLPVAVASNATVPATVVPSQKPGLLGAPIRRDNSSMKHGFDLRNQNSAQPPLPKLHGQGGWIVEEEVNRVLPNNRPVSIATGLPSHASQAKGEEAIMAHDLHKQNLPPASQPPEIGVSQNHVSSNSREFLTEGGKTNLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYVAYITPRSGAMDRDFDKLSLENENGFLWDTIISESNEGLREDGLRKESTPEASEVEPGSTYASLGNQQVQKRPNVPKLSKLIPSKRLKDEPPQT

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
RNA polymerase II C-terminal domain phosphatase-like 2 Processively dephosphorylates 'Ser-5' but not 'Ser-2' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II. Together with CPL1, required for male gametes fertility. Multifunctional regulator that modulates plant growth, stress, and phytohormones responses. Positive transcription regulator of genes involved in high salinity resistance and auxin mediated signaling pathway.probableQ5YDB5

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.1.-.-Acting on ester bonds.probable
3.1.3.-Phosphoric monoester hydrolases.probable
3.1.3.16Phosphoprotein phosphatase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3EF0, chain A
Confidence level:very confident
Coverage over the Query: 127-188,210-216,245-427
View the alignment between query and template
View the model in PyMOL
Template: 1QU6, chain A
Confidence level:very confident
Coverage over the Query: 623-693
View the alignment between query and template
View the model in PyMOL