Citrus Sinensis ID: 003896
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | 2.2.26 [Sep-21-2011] | |||||||
| Q5YDB5 | 770 | RNA polymerase II C-termi | yes | no | 0.920 | 0.941 | 0.616 | 0.0 | |
| Q5YDB6 | 967 | RNA polymerase II C-termi | no | no | 0.869 | 0.708 | 0.437 | 1e-166 | |
| Q03254 | 732 | RNA polymerase II subunit | yes | no | 0.138 | 0.148 | 0.317 | 2e-05 | |
| Q7TSG2 | 960 | RNA polymerase II subunit | yes | no | 0.140 | 0.115 | 0.338 | 0.0002 | |
| Q9P376 | 723 | RNA polymerase II subunit | yes | no | 0.128 | 0.139 | 0.316 | 0.0002 | |
| Q9Y5B0 | 961 | RNA polymerase II subunit | no | no | 0.109 | 0.089 | 0.357 | 0.0004 |
| >sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3 | Back alignment and function desciption |
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Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/774 (61%), Positives = 577/774 (74%), Gaps = 49/774 (6%)
Query: 1 MSRLGYKNIVYHGDVCLGELDTILVSDEN-FQFPNNEIRIRHISPSSERCIPLSILHTIS 59
M+RLG+K++VYHGD+ LGELD VS + F+FPN+EIRI H+SP+ ERC PL+IL TI+
Sbjct: 1 MNRLGHKSVVYHGDLRLGELDVNHVSSSHEFRFPNDEIRIHHLSPAGERCPPLAILQTIA 60
Query: 60 SFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQKKFPCFWCY 119
SF++RCKLESSAPV+ L++LHA CF+E KTAVV++GDEEIHLVAMPSK+KKFPCFWC+
Sbjct: 61 SFAVRCKLESSAPVKSQELMHLHAVCFHELKTAVVMLGDEEIHLVAMPSKEKKFPCFWCF 120
Query: 120 SVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASG 179
SV SGLY+SCL MLN RCL+IVFDLDETLIVANTMKSFEDRIEAL+SWI+RE D +R +G
Sbjct: 121 SVPSGLYDSCLRMLNTRCLSIVFDLDETLIVANTMKSFEDRIEALKSWISREMDPVRING 180
Query: 180 MSAELKRYMDDRTLLKQYTENDCVMDNGKVFKVQQEEVPPPSENHERIVRPVIRIPERNL 239
MSAELKRYMDDR LLKQY +ND DNG + K Q EEV P S+ E++ RPVIR+PE+N
Sbjct: 181 MSAELKRYMDDRMLLKQYIDNDYAFDNGVLLKAQPEEVRPTSDGQEKVCRPVIRLPEKNT 240
Query: 240 VLTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE 299
VLTRI PE RDTSVLV+LRPAWE+LRSYL AK RKRFEVYVCTMAERDYALEMWRLLDPE
Sbjct: 241 VLTRIKPEIRDTSVLVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRLLDPE 300
Query: 300 GHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVP 359
HLI K+L DR+VCVK ++KSLL+VF G+CHPKMAMVIDDR KVWEDKDQPRVHVV
Sbjct: 301 AHLISLKELRDRIVCVKPDAKKSLLSVFNGGICHPKMAMVIDDRMKVWEDKDQPRVHVVS 360
Query: 360 AFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAA 419
A+ PYYAPQAETA VP LCVARNVACNVRG FFKEFDE+L+ SIS V+YED+ NLP +
Sbjct: 361 AYLPYYAPQAETALVVPHLCVARNVACNVRGYFFKEFDESLMSSISLVYYEDDVENLPPS 420
Query: 420 PDVSNYLMSEDANFAPNGSTNA-PMSEGLNGLEVERRLNQSDEKYVVDSGLPSMKNSSDL 478
PDVSNY++ ED FA NG+ NA P++EG+ G EVERRLNQ+ S LP+ N ++
Sbjct: 421 PDVSNYVVIEDPGFASNGNINAPPINEGMCGGEVERRLNQA--AAADHSTLPATSN-AEQ 477
Query: 479 KSETSLLPVAV---ASNATVPATVVPSQKPGLLGAPIRRDNSS---------MKHGFDLR 526
K ET +AV ++ A ++PS KP LLGAP RRD + M+ G D+R
Sbjct: 478 KPETPKPQIAVIPNNASTATAAALLPSHKPSLLGAP-RRDGFTFSDGGRPLMMRPGVDIR 536
Query: 527 NQNSAQPPL----------PKLHGQGGWIVEEEVNR-------------VLPNNRPVSIA 563
NQN QPP+ +H GGW+V++E NR P+ P S
Sbjct: 537 NQNFNQPPILAKIPMQPPSSSMHSPGGWLVDDE-NRPSFPGRPSGLYPSQFPHGTPGSAP 595
Query: 564 TGLPSHASQAKGEEAIMAHDLHKQNLPPASQPPEIGVSQNHVSSNSREFLTEGGKTNLLP 623
G +H S + EE M DL +QN P+ Q E G+SQNH+ SN RE T+GGK+N
Sbjct: 596 VGPFAHPSHLRSEEVAMDDDLKRQN--PSRQTTEGGISQNHLVSNGREHHTDGGKSNGGQ 653
Query: 624 SYLSIGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAA 683
S+L + LQEIG+RC SKVEFR+V+ST+K+LQFSVEVLFTGEKIG+GM KT+KDA QQAA
Sbjct: 654 SHLFVSALQEIGRRCGSKVEFRTVISTNKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAA 713
Query: 684 ENALHYLAEKYVAYITPRSGAMDRDFDKLSLENENGFLWDTIISESNEGLREDG 737
ENAL LAEKYVA++ P + R+ +K EN+NGFLW++ SN+GL E+
Sbjct: 714 ENALRSLAEKYVAHVAP----LARETEK-GPENDNGFLWESSEDVSNKGLEEEA 762
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Processively dephosphorylates 'Ser-5' but not 'Ser-2' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II. Together with CPL1, required for male gametes fertility. Multifunctional regulator that modulates plant growth, stress, and phytohormones responses. Positive transcription regulator of genes involved in high salinity resistance and auxin mediated signaling pathway. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6 |
| >sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcp1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | ||||||
| 297740221 | 853 | unnamed protein product [Vitis vinifera] | 0.989 | 0.914 | 0.706 | 0.0 | |
| 255574401 | 786 | double-stranded RNA binding protein, put | 0.918 | 0.921 | 0.665 | 0.0 | |
| 359481666 | 789 | PREDICTED: LOW QUALITY PROTEIN: RNA poly | 0.928 | 0.927 | 0.662 | 0.0 | |
| 449520076 | 837 | PREDICTED: RNA polymerase II C-terminal | 0.978 | 0.921 | 0.656 | 0.0 | |
| 449460369 | 829 | PREDICTED: RNA polymerase II C-terminal | 0.978 | 0.930 | 0.656 | 0.0 | |
| 356521002 | 830 | PREDICTED: RNA polymerase II C-terminal | 0.973 | 0.924 | 0.630 | 0.0 | |
| 357505895 | 796 | RNA polymerase II C-terminal domain phos | 0.964 | 0.954 | 0.619 | 0.0 | |
| 356568068 | 806 | PREDICTED: RNA polymerase II C-terminal | 0.941 | 0.920 | 0.591 | 0.0 | |
| 297806101 | 770 | hypothetical protein ARALYDRAFT_486948 [ | 0.920 | 0.941 | 0.618 | 0.0 | |
| 334187353 | 774 | RNA polymerase II C-terminal domain phos | 0.920 | 0.936 | 0.616 | 0.0 |
| >gi|297740221|emb|CBI30403.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1180 bits (3052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/836 (70%), Positives = 661/836 (79%), Gaps = 56/836 (6%)
Query: 1 MSRLGYKNIVYHGDVCLGELDTILVSDENFQFPNNEIRIRHISPSSERCIPLSILHTISS 60
MSRLG+K++VYHGD+ LGELD I V D++FQFPNNEIR+ HISP SERC PLSILHTISS
Sbjct: 1 MSRLGFKSLVYHGDLFLGELDAIPVKDQSFQFPNNEIRVHHISPISERCPPLSILHTISS 60
Query: 61 FSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQKKFPCFWCYS 120
FS+RCKLESS+P++QP+LINLHASCF+E KTAVV+IGDEE+HLVAMPSKQKKFPCFWCYS
Sbjct: 61 FSVRCKLESSSPIQQPNLINLHASCFHELKTAVVLIGDEELHLVAMPSKQKKFPCFWCYS 120
Query: 121 VSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASGM 180
V GLY+S L MLNLRCLAIVFDLDETLIVANTMKSFEDRI+ALR WIARE DQ+R SGM
Sbjct: 121 VPCGLYSSSLWMLNLRCLAIVFDLDETLIVANTMKSFEDRIDALRGWIARESDQVRISGM 180
Query: 181 SAELKRYMDDRTLLKQYTENDCVMDNGKVFKVQQEEVPPPSENHERIVRPVIRIPERNLV 240
SAELKRY+DDR LLKQYTEND VMDNGK+ KVQ EEV P S++HER+VRPVIR PERN+V
Sbjct: 181 SAELKRYIDDRALLKQYTENDLVMDNGKILKVQSEEVAPLSDSHERVVRPVIRFPERNIV 240
Query: 241 LTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEG 300
LTRINPE RDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE
Sbjct: 241 LTRINPEIRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEA 300
Query: 301 HLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPA 360
HLIGSKQLLDRVVCVKSGSRKSLLNVFQ G CHPKMAMVIDDR KVWEDKDQPRVHVVP
Sbjct: 301 HLIGSKQLLDRVVCVKSGSRKSLLNVFQNGSCHPKMAMVIDDRLKVWEDKDQPRVHVVPP 360
Query: 361 FTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAP 420
FTPYYAPQAET N VP+LCVARNVACNVR FFKEFDEN+LR ISE+FYEDE VNLP+AP
Sbjct: 361 FTPYYAPQAETTNPVPILCVARNVACNVRAGFFKEFDENILRQISELFYEDEVVNLPSAP 420
Query: 421 DVSNYLMSEDANFAPNGSTNAPMSEGLNGLEVERRLNQSDEKYVVDSGLPSMKNSSDLKS 480
DVSNYLMSEDA F PNG+ N P++EG++G EVERRLNQ ++VDS + NS + +S
Sbjct: 421 DVSNYLMSEDAGFVPNGNANVPIAEGMHGAEVERRLNQ---PHIVDSAASPIANSYEFRS 477
Query: 481 ETSLLPVAVASNATVPAT---VVPSQKPGLLGAPIRRDNSS-------------MKHGFD 524
ET P N P + ++PSQKP LLGAPI+RD SS MKHG D
Sbjct: 478 ETLQPPALTVQNVVGPTSSRLLMPSQKPSLLGAPIKRDFSSFESDADMKRRLLIMKHGQD 537
Query: 525 LRNQNSAQPP----LPK-----LHGQGGWIVEEEVNRVLPNNR----------------- 558
+RNQ+ PP LP+ LH QG W+VE++ NR NNR
Sbjct: 538 VRNQSLGDPPILSRLPQISTSSLHPQGVWLVEDDSNRGHLNNRASGLVQEADVLKPDKQR 597
Query: 559 ----------PVSIATGLPSHASQAKGEEAIMAHDLHKQNLPPASQPPEIGVSQNHVSSN 608
P S L H Q K +E A++ K+NLPPASQP E+GVSQN S+
Sbjct: 598 GHQIPFGHNTPGSTPVSLLPHLPQLKNDEVSAANERQKKNLPPASQPSEVGVSQNQASTT 657
Query: 609 SREFLTEGGKTNLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIG 668
RE TE GK N++P +LSIGVLQEIG+RCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIG
Sbjct: 658 GRE-QTEAGKVNMMPPHLSIGVLQEIGRRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIG 716
Query: 669 VGMGKTRKDAQQQAAENALHYLAEKYVAYITPRSGAMDRDFDKLSLENENGFLWDTIISE 728
VGMGKTRKDAQQQAAENALH LA+KYVAY TP SGA+D+DFDKLSL NENGFLWDT +
Sbjct: 717 VGMGKTRKDAQQQAAENALHSLADKYVAYTTPHSGAVDKDFDKLSLSNENGFLWDTTSAG 776
Query: 729 SNEGLREDGLRKESTPEASEVEPGSTYASLGNQQVQKRPNVPKLSKLIPSKRLKDE 784
S+E L EDG KES EA E+ G+T +S+ NQQVQKR N P+L + IPSKR K+E
Sbjct: 777 SSELLMEDGFPKESISEAGEMAHGTTSSSVVNQQVQKRANSPRLPQSIPSKRSKEE 832
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574401|ref|XP_002528114.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223532503|gb|EEF34293.1| double-stranded RNA binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359481666|ref|XP_002274594.2| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449520076|ref|XP_004167060.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449460369|ref|XP_004147918.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356521002|ref|XP_003529147.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357505895|ref|XP_003623236.1| RNA polymerase II C-terminal domain phosphatase-like protein [Medicago truncatula] gi|355498251|gb|AES79454.1| RNA polymerase II C-terminal domain phosphatase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356568068|ref|XP_003552235.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297806101|ref|XP_002870934.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp. lyrata] gi|297316771|gb|EFH47193.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|334187353|ref|NP_001190199.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis thaliana] gi|332002938|gb|AED90321.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | ||||||
| TAIR|locus:2119053 | 967 | CPL1 "C-terminal domain phosph | 0.596 | 0.486 | 0.571 | 1.1e-159 | |
| UNIPROTKB|K7EJD2 | 799 | CTDP1 "RNA polymerase II subun | 0.138 | 0.136 | 0.336 | 0.00025 | |
| UNIPROTKB|Q9Y5B0 | 961 | CTDP1 "RNA polymerase II subun | 0.138 | 0.113 | 0.336 | 0.00056 |
| TAIR|locus:2119053 CPL1 "C-terminal domain phosphatase-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1329 (472.9 bits), Expect = 1.1e-159, Sum P(5) = 1.1e-159
Identities = 275/481 (57%), Positives = 345/481 (71%)
Query: 37 IRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVI 96
IRI H S S ERC PL+IL TISS L KLE+S Q L ++SC + KTAV+++
Sbjct: 53 IRISHFSQSGERCPPLAILTTISSCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLL 112
Query: 97 GDEEIHLVAMPSKQKKF--PCFWCYSVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTM 154
G EE+HLVAM S+ K PCFW +SV+ G+Y+SCL MLNLRCL IVFDLDETL+VANTM
Sbjct: 113 GGEELHLVAMYSENIKNDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTM 172
Query: 155 KSFEDRIEALRSWIAREPDQIRASGMSAELKRYMDDRTLLKQYTENDCVMDNGKVFKVQQ 214
+SFED+I+ + I E D R + + AE+KRY DD+ LLKQY E+D V++NG+V KVQ
Sbjct: 173 RSFEDKIDGFQRRINNEMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQS 232
Query: 215 EEVPPPSENHXXXXXXXXXXXXXNLVLTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRK 274
E VP S+NH N++LTRINP RDTSVLVR+RP+WE+LRSYL AKGRK
Sbjct: 233 EIVPALSDNHQPLVRPLIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRK 292
Query: 275 RFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHP 334
RFEVYVCTMAERDYALEMWRLLDPEG+LI + LL R+VCVKSG +KSL NVF G CHP
Sbjct: 293 RFEVYVCTMAERDYALEMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHP 352
Query: 335 KMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFK 394
KMA+VIDDR KVW++KDQPRVHVVPAF PYY+PQAE A A PVLCVARNVAC VRG FF+
Sbjct: 353 KMALVIDDRLKVWDEKDQPRVHVVPAFAPYYSPQAEAA-ATPVLCVARNVACGVRGGFFR 411
Query: 395 EFDENLLRSISEVFYEDEAVNLPAAPDVSNYLMSEDANFAPNGSTNAPMS-EGLNGLEVE 453
+FD++LL I+E+ YE++A ++P+ PDVS+YL+SED NG+ + P+S +G+ EVE
Sbjct: 412 DFDDSLLPRIAEISYENDAEDIPSPPDVSHYLVSEDDTSGLNGNKD-PLSFDGMADTEVE 470
Query: 454 RRLNQSDEKYVVDSGLPSMKNSSDLKSETSLLPVAVASNATVPATV-VPSQ--KPGLLGA 510
RRL ++ + LP+ + + P+A AS+ +VP V V Q +P +
Sbjct: 471 RRLKEAIS--ASSAVLPAANIDPRIAAPVQF-PMASASSVSVPVPVQVVQQAIQPSAMAF 527
Query: 511 P 511
P
Sbjct: 528 P 528
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| UNIPROTKB|K7EJD2 CTDP1 "RNA polymerase II subunit A C-terminal domain phosphatase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y5B0 CTDP1 "RNA polymerase II subunit A C-terminal domain phosphatase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5YDB5 | CPL2_ARATH | 3, ., 1, ., 3, ., 1, 6 | 0.6162 | 0.9200 | 0.9415 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.3.16 | 0.946 |
| 3rd Layer | 3.1.3 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 788 | |||
| TIGR02250 | 156 | TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph | 1e-13 | |
| pfam00035 | 66 | pfam00035, dsrm, Double-stranded RNA binding motif | 7e-12 | |
| smart00358 | 67 | smart00358, DSRM, Double-stranded RNA binding moti | 7e-11 | |
| cd00048 | 68 | cd00048, DSRM, Double-stranded RNA binding motif | 8e-11 | |
| smart00577 | 148 | smart00577, CPDc, catalytic domain of ctd-like pho | 6e-08 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 1e-07 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 2e-06 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 4e-06 |
| >gnl|CDD|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 15/97 (15%)
Query: 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVV 313
L +LRP L +L + K +E++V TM R YA + +L+DP+G G DR++
Sbjct: 56 LTKLRPF---LHEFL-KEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRII 106
Query: 314 CVK-SGSR--KSLLNVFQRGLCHPKMAMVIDDRCKVW 347
SGS KSLL +F M ++IDDR VW
Sbjct: 107 SRDESGSPHTKSLLRLF---PADESMVVIIDDREDVW 140
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This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156 |
| >gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif | Back alignment and domain information |
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| >gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
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| >gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
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| >gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases | Back alignment and domain information |
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| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
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| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
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| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| KOG0323 | 635 | consensus TFIIF-interacting CTD phosphatases, incl | 100.0 | |
| TIGR02250 | 156 | FCP1_euk FCP1-like phosphatase, phosphatase domain | 99.95 | |
| TIGR02251 | 162 | HIF-SF_euk Dullard-like phosphatase domain. This d | 99.88 | |
| PF03031 | 159 | NIF: NLI interacting factor-like phosphatase; Inte | 99.87 | |
| KOG1605 | 262 | consensus TFIIF-interacting CTD phosphatase, inclu | 99.85 | |
| TIGR02245 | 195 | HAD_IIID1 HAD-superfamily subfamily IIID hydrolase | 99.65 | |
| smart00577 | 148 | CPDc catalytic domain of ctd-like phosphatases. | 99.64 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 99.61 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 99.53 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 99.52 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 99.5 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.49 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 99.47 | |
| COG5190 | 390 | FCP1 TFIIF-interacting CTD phosphatases, including | 99.46 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.42 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.37 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.34 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.27 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.2 | |
| COG5190 | 390 | FCP1 TFIIF-interacting CTD phosphatases, including | 99.16 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 98.96 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 98.87 | |
| KOG2832 | 393 | consensus TFIIF-interacting CTD phosphatase, inclu | 98.75 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 98.71 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 98.11 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 97.86 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 97.75 | |
| TIGR01685 | 174 | MDP-1 magnesium-dependent phosphatase-1. This mode | 97.68 | |
| TIGR01489 | 188 | DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent | 97.66 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 97.42 | |
| TIGR01488 | 177 | HAD-SF-IB Haloacid Dehalogenase superfamily, subfa | 97.42 | |
| PLN02954 | 224 | phosphoserine phosphatase | 97.33 | |
| TIGR01509 | 183 | HAD-SF-IA-v3 haloacid dehalogenase superfamily, su | 97.33 | |
| TIGR01993 | 184 | Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These | 97.3 | |
| TIGR00338 | 219 | serB phosphoserine phosphatase SerB. Phosphoserine | 97.21 | |
| TIGR03351 | 220 | PhnX-like phosphonatase-like hydrolase. This clade | 97.19 | |
| TIGR01491 | 201 | HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa | 97.19 | |
| TIGR01681 | 128 | HAD-SF-IIIC HAD-superfamily phosphatase, subfamily | 97.14 | |
| TIGR01454 | 205 | AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes | 97.13 | |
| TIGR02253 | 221 | CTE7 HAD superfamily (subfamily IA) hydrolase, TIG | 97.12 | |
| cd01427 | 139 | HAD_like Haloacid dehalogenase-like hydrolases. Th | 97.03 | |
| TIGR01422 | 253 | phosphonatase phosphonoacetaldehyde hydrolase. Thi | 97.02 | |
| PLN03243 | 260 | haloacid dehalogenase-like hydrolase; Provisional | 97.0 | |
| TIGR01549 | 154 | HAD-SF-IA-v1 haloacid dehalogenase superfamily, su | 96.97 | |
| PRK13288 | 214 | pyrophosphatase PpaX; Provisional | 96.92 | |
| PRK13226 | 229 | phosphoglycolate phosphatase; Provisional | 96.88 | |
| TIGR01548 | 197 | HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, | 96.87 | |
| PRK13222 | 226 | phosphoglycolate phosphatase; Provisional | 96.85 | |
| PRK11587 | 218 | putative phosphatase; Provisional | 96.84 | |
| PRK13225 | 273 | phosphoglycolate phosphatase; Provisional | 96.76 | |
| PLN02575 | 381 | haloacid dehalogenase-like hydrolase | 96.65 | |
| TIGR01533 | 266 | lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil | 96.55 | |
| PRK13223 | 272 | phosphoglycolate phosphatase; Provisional | 96.55 | |
| PRK06698 | 459 | bifunctional 5'-methylthioadenosine/S-adenosylhomo | 96.51 | |
| TIGR01428 | 198 | HAD_type_II 2-haloalkanoic acid dehalogenase, type | 96.49 | |
| PHA02597 | 197 | 30.2 hypothetical protein; Provisional | 96.32 | |
| PRK09552 | 219 | mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp | 96.28 | |
| TIGR01990 | 185 | bPGM beta-phosphoglucomutase. The enzyme from L. l | 96.27 | |
| TIGR02252 | 203 | DREG-2 REG-2-like, HAD superfamily (subfamily IA) | 96.24 | |
| PRK13478 | 267 | phosphonoacetaldehyde hydrolase; Provisional | 96.22 | |
| COG0546 | 220 | Gph Predicted phosphatases [General function predi | 96.21 | |
| PRK10563 | 221 | 6-phosphogluconate phosphatase; Provisional | 96.19 | |
| COG1011 | 229 | Predicted hydrolase (HAD superfamily) [General fun | 96.17 | |
| COG4996 | 164 | Predicted phosphatase [General function prediction | 96.13 | |
| KOG3109 | 244 | consensus Haloacid dehalogenase-like hydrolase [Ge | 96.08 | |
| PRK13582 | 205 | thrH phosphoserine phosphatase; Provisional | 96.01 | |
| TIGR03333 | 214 | salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl | 95.97 | |
| PLN02940 | 382 | riboflavin kinase | 95.79 | |
| PRK09456 | 199 | ?-D-glucose-1-phosphatase; Provisional | 95.55 | |
| PRK08238 | 479 | hypothetical protein; Validated | 95.49 | |
| TIGR01684 | 301 | viral_ppase viral phosphatase. These proteins also | 95.37 | |
| TIGR02247 | 211 | HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li | 95.07 | |
| COG0637 | 221 | Predicted phosphatase/phosphohexomutase [General f | 94.79 | |
| TIGR01672 | 237 | AphA HAD superfamily (subfamily IIIB) phosphatase, | 94.68 | |
| PRK11133 | 322 | serB phosphoserine phosphatase; Provisional | 94.67 | |
| TIGR02137 | 203 | HSK-PSP phosphoserine phosphatase/homoserine phosp | 94.66 | |
| TIGR01686 | 320 | FkbH FkbH-like domain. The C-terminal portion of t | 94.61 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 94.47 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 94.45 | |
| PHA03398 | 303 | viral phosphatase superfamily protein; Provisional | 94.17 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 94.08 | |
| PF13419 | 176 | HAD_2: Haloacid dehalogenase-like hydrolase; PDB: | 94.07 | |
| PRK11590 | 211 | hypothetical protein; Provisional | 93.74 | |
| COG0560 | 212 | SerB Phosphoserine phosphatase [Amino acid transpo | 93.72 | |
| TIGR01664 | 166 | DNA-3'-Pase DNA 3'-phosphatase. The central phosph | 93.66 | |
| PRK10748 | 238 | flavin mononucleotide phosphatase; Provisional | 92.76 | |
| PRK11009 | 237 | aphA acid phosphatase/phosphotransferase; Provisio | 92.75 | |
| PLN02770 | 248 | haloacid dehalogenase-like hydrolase family protei | 91.49 | |
| PF12689 | 169 | Acid_PPase: Acid Phosphatase; InterPro: IPR010036 | 90.69 | |
| TIGR01449 | 213 | PGP_bact 2-phosphoglycolate phosphatase, prokaryot | 90.65 | |
| PF06888 | 234 | Put_Phosphatase: Putative Phosphatase; InterPro: I | 89.55 | |
| KOG0323 | 635 | consensus TFIIF-interacting CTD phosphatases, incl | 89.21 | |
| TIGR02254 | 224 | YjjG/YfnB HAD superfamily (subfamily IA) hydrolase | 88.85 | |
| PF00702 | 215 | Hydrolase: haloacid dehalogenase-like hydrolase; I | 88.81 | |
| PRK14988 | 224 | GMP/IMP nucleotidase; Provisional | 88.77 | |
| PF12710 | 192 | HAD: haloacid dehalogenase-like hydrolase; PDB: 3P | 87.95 | |
| PRK10826 | 222 | 2-deoxyglucose-6-phosphatase; Provisional | 86.7 | |
| PLN02779 | 286 | haloacid dehalogenase-like hydrolase family protei | 86.41 | |
| smart00559 | 140 | Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of | 85.53 | |
| PF11019 | 252 | DUF2608: Protein of unknown function (DUF2608); In | 85.34 | |
| PF06941 | 191 | NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol | 85.21 | |
| PRK09449 | 224 | dUMP phosphatase; Provisional | 84.91 | |
| TIGR01670 | 154 | YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho | 84.79 | |
| TIGR01691 | 220 | enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen | 84.52 | |
| PF08282 | 254 | Hydrolase_3: haloacid dehalogenase-like hydrolase; | 84.05 | |
| PRK03669 | 271 | mannosyl-3-phosphoglycerate phosphatase; Reviewed | 83.78 | |
| PF05152 | 297 | DUF705: Protein of unknown function (DUF705); Inte | 83.54 | |
| PF14954 | 252 | LIX1: Limb expression 1 | 83.04 | |
| cd00594 | 272 | KU Ku-core domain; includes the central DNA-bindin | 82.32 | |
| TIGR01261 | 161 | hisB_Nterm histidinol-phosphatase. This model desc | 82.02 | |
| PRK09484 | 183 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphata | 81.31 | |
| TIGR01485 | 249 | SPP_plant-cyano sucrose-6F-phosphate phosphohydrol | 81.29 |
| >KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-57 Score=506.24 Aligned_cols=526 Identities=28% Similarity=0.346 Sum_probs=406.5
Q ss_pred CCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCC-CCchhHHHHHHHhhcccccEEEEeCCeeEEEEecCCCC
Q 003896 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAP-VEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQ 110 (788)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~-~~~~~l~~lh~~~~~e~ktaVv~~~~~elhLva~~~~~ 110 (788)
.+.-++++.+||...|+|++++++-+++.++++++.+++.. ..+.-+..+++.|..+.++|||..+.++.|+|||.++.
T Consensus 4 ~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~v~~~~~~ 83 (635)
T KOG0323|consen 4 QPGPEERREAFSIVIERSPDLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLGRDLEKKVALISGV 83 (635)
T ss_pred cCCCcchhhhhhhhhccCcchhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccccchhhhhcccccc
Confidence 45556999999999999999999999999999999998755 45777999999999999999999999999999999887
Q ss_pred CC-CceEeeeecCcchhHhHHHhhhccceEEEEeCCcceeecccccchHHHHHHHHHHhhcCCchhhhhchhHHHHHhhc
Q 003896 111 KK-FPCFWCYSVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASGMSAELKRYMD 189 (788)
Q Consensus 111 ~~-~p~F~~~~~~~g~y~~~~~lL~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~~dP~~~~~~~~E~kr~~~ 189 (788)
-. .+|+|+|.|.-|+|+.|..+|+.+|...++||++|++.+++|..+.++|.++..||.+.. |+++++
T Consensus 84 ~~~~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~D 152 (635)
T KOG0323|consen 84 SSSTSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVLD 152 (635)
T ss_pred ccccCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeehh
Confidence 55 599999999999999999999999999999999999999999999999999999997766 677888
Q ss_pred hHHHHHhhhccceeeeCCeEEEecccccCCCCCCccccccceeecCCCcceeeecCCCCCCceEEEEecCChHHHHHHHH
Q 003896 190 DRTLLKQYTENDCVMDNGKVFKVQQEEVPPPSENHERIVRPVIRIPERNLVLTRINPENRDTSVLVRLRPAWEDLRSYLI 269 (788)
Q Consensus 190 D~~lL~q~~~~d~V~~nG~~~~~q~E~v~~~~d~~~~~~RpviRl~~~n~~ltrI~P~~r~t~y~VKLRPgweeLreFL~ 269 (788)
+...|.+|+..+.+..+++-++.+.+.+ ..|..++||+|..+.++|||||||+ +.+||+
T Consensus 153 ld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~~~~vKlRP~---~~efL~ 211 (635)
T KOG0323|consen 153 LDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDTEYLVKLRPF---VHEFLK 211 (635)
T ss_pred hhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCceEEEEeCcc---HHHHHH
Confidence 8889999999999999888877766655 3578899999999999999999999 778998
Q ss_pred HhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC---cccHhhhcccCCCCCCeEEEEeCCccc
Q 003896 270 AKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS---RKSLLNVFQRGLCHPKMAMVIDDRCKV 346 (788)
Q Consensus 270 ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~---~KsL~rLf~~g~~d~~~VVIIDDR~dV 346 (788)
+++++|||||||||+|.||+.||++|||+|+||+ +||+||+.+. +++|..+|+ |+++||||||||.+|
T Consensus 212 -~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p---~g~smvvIIDDr~dV 282 (635)
T KOG0323|consen 212 -EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP---CGDSMVVIIDDRSDV 282 (635)
T ss_pred -HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC---CCCccEEEEeCcccc
Confidence 8999999999999999999999999999999999 9999996643 556666666 899999999999999
Q ss_pred cccCCCCCeEEecCcCCCCCchhhhhcccchHHHHHHHhhhcchhhhhhhhHHHHHhhhhhhcccccCCCCCCCCccccc
Q 003896 347 WEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAPDVSNYL 426 (788)
Q Consensus 347 W~~~~~NlI~VVp~Y~py~~~q~E~~~~~p~L~~a~~VL~~Vh~~fFk~~De~l~~rI~e~~~e~~~~~~~~~pdV~n~l 426 (788)
|.++++|+|.|. +|.|| ..+++.+.. |.++.+.+++|.+++.||+++|+.+..+|.++-|+++-.+.|..+++
T Consensus 283 W~~~~~nLI~i~-~y~yF-~~~gd~nap-~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~---- 355 (635)
T KOG0323|consen 283 WPDHKRNLIQIA-PYPYF-SGQGDINAP-PPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSV---- 355 (635)
T ss_pred ccCCCcceEEee-eeecc-cCcccccCC-cccccccchhcccccccccccCcccccccccccccccccccCccccc----
Confidence 999998788765 46444 444443322 78999999999999999999999999999999999999999999998
Q ss_pred cccCCccCCCCCCCCCCCCCcchhHHHHhhcccCccccccCCCCCccCCCcccccCCCCceeeccCCCCCCcccCCCCCC
Q 003896 427 MSEDANFAPNGSTNAPMSEGLNGLEVERRLNQSDEKYVVDSGLPSMKNSSDLKSETSLLPVAVASNATVPATVVPSQKPG 506 (788)
Q Consensus 427 ~~e~~~~~~n~n~~~~~~~gm~~~everrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 506 (788)
.+|+|.+++.+|||.+. . |+-
T Consensus 356 -------~~~~~~~p~~~~~~~~~------------~----------------~~~------------------------ 376 (635)
T KOG0323|consen 356 -------ELSANPGPLKQDGMDEF------------V----------------PEE------------------------ 376 (635)
T ss_pred -------ccccccCcccccccccc------------c----------------ccc------------------------
Confidence 57888889999999987 0 000
Q ss_pred CCCCCcccCCcccccCcccCCCCCCCCCCCccCCCCCeeeeccccccCCCCCCccccCCCCCCCcccccch----hhhhh
Q 003896 507 LLGAPIRRDNSSMKHGFDLRNQNSAQPPLPKLHGQGGWIVEEEVNRVLPNNRPVSIATGLPSHASQAKGEE----AIMAH 582 (788)
Q Consensus 507 ~~~~p~~~~~~~~~hg~d~r~~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 582 (788)
-+| +.+..++++.-++.... +++| ..-..+..+.|+.||.+.. ....-
T Consensus 377 --~~~---~~~~~s~~~~~~de~~~---------------D~~L--------~~~~kvl~~vH~~ff~~~~~~~e~~~~~ 428 (635)
T KOG0323|consen 377 --NAP---EARSGSYREKKSDESDE---------------DGEL--------ANLLKVLKPVHKGFFAKYDEVEETLESP 428 (635)
T ss_pred --cch---hhccccccccccccccc---------------chhH--------HHHhhhhcccchhhhhccccccccccCC
Confidence 000 00011222222332210 0110 0013456677888888643 22222
Q ss_pred hhcccCCCCCCCCCcccccccccCCCCccccccCcc----------ccCCCCCChHHHHHHHHHhCCCCceEEEEeeeCC
Q 003896 583 DLHKQNLPPASQPPEIGVSQNHVSSNSREFLTEGGK----------TNLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTSK 652 (788)
Q Consensus 583 ~~~~~~~~~~~~~~e~~~~~n~~~~~~~~f~~ee~~----------~~~~ps~dyKS~LQE~~QK~~~~peYelveesGH 652 (788)
|. ++.+|+ .....-..+.++++...+.+...+.. ....+. -..-.++.++.+++....|+.......
T Consensus 429 Dv-r~~i~~-~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~-~~~~~th~i~~~~gt~k~~~a~~~~~~ 505 (635)
T KOG0323|consen 429 DV-RLLIPE-LRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPD-VSDKTTHLIAANAGTKKVYKAVVSGSA 505 (635)
T ss_pred Ch-hhhhhh-hhhHHhhccceeecccccCcCCcchhhhhhhhhcccceeccc-ccchhhhHHhhccCcceeeccccccce
Confidence 22 222222 22233344446666655554432210 000111 223346777777777677766433213
Q ss_pred CceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHHhhh
Q 003896 653 DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYV 695 (788)
Q Consensus 653 ~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~~yl 695 (788)
.-.|...+|--.+++|.|.++.++.+-..+|......+...|.
T Consensus 506 ~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~~~~~~~~~a~~~~ 548 (635)
T KOG0323|consen 506 KVVNAAWLWRSLEKWGKVEEKLEPLDDDQRAAIRRESLARLYE 548 (635)
T ss_pred eEechhHHHHHHHHhcchhcccccccccccchhcccchhhhhh
Confidence 3345666777788999999999999999998888877776554
|
|
| >TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain | Back alignment and domain information |
|---|
| >TIGR02251 HIF-SF_euk Dullard-like phosphatase domain | Back alignment and domain information |
|---|
| >PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear | Back alignment and domain information |
|---|
| >KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription] | Back alignment and domain information |
|---|
| >TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245 | Back alignment and domain information |
|---|
| >smart00577 CPDc catalytic domain of ctd-like phosphatases | Back alignment and domain information |
|---|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
| >COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
| >KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription] | Back alignment and domain information |
|---|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01685 MDP-1 magnesium-dependent phosphatase-1 | Back alignment and domain information |
|---|
| >TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase | Back alignment and domain information |
|---|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like | Back alignment and domain information |
|---|
| >PLN02954 phosphoserine phosphatase | Back alignment and domain information |
|---|
| >TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED | Back alignment and domain information |
|---|
| >TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase | Back alignment and domain information |
|---|
| >TIGR00338 serB phosphoserine phosphatase SerB | Back alignment and domain information |
|---|
| >TIGR03351 PhnX-like phosphonatase-like hydrolase | Back alignment and domain information |
|---|
| >TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal | Back alignment and domain information |
|---|
| >TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC | Back alignment and domain information |
|---|
| >TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein | Back alignment and domain information |
|---|
| >TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253 | Back alignment and domain information |
|---|
| >cd01427 HAD_like Haloacid dehalogenase-like hydrolases | Back alignment and domain information |
|---|
| >TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase | Back alignment and domain information |
|---|
| >PLN03243 haloacid dehalogenase-like hydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E | Back alignment and domain information |
|---|
| >PRK13288 pyrophosphatase PpaX; Provisional | Back alignment and domain information |
|---|
| >PRK13226 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548 | Back alignment and domain information |
|---|
| >PRK13222 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK11587 putative phosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK13225 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
| >PLN02575 haloacid dehalogenase-like hydrolase | Back alignment and domain information |
|---|
| >TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family | Back alignment and domain information |
|---|
| >PRK13223 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated | Back alignment and domain information |
|---|
| >TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II | Back alignment and domain information |
|---|
| >PHA02597 30 | Back alignment and domain information |
|---|
| >PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01990 bPGM beta-phosphoglucomutase | Back alignment and domain information |
|---|
| >TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase | Back alignment and domain information |
|---|
| >PRK13478 phosphonoacetaldehyde hydrolase; Provisional | Back alignment and domain information |
|---|
| >COG0546 Gph Predicted phosphatases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10563 6-phosphogluconate phosphatase; Provisional | Back alignment and domain information |
|---|
| >COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >COG4996 Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13582 thrH phosphoserine phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase | Back alignment and domain information |
|---|
| >PLN02940 riboflavin kinase | Back alignment and domain information |
|---|
| >PRK09456 ?-D-glucose-1-phosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK08238 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR01684 viral_ppase viral phosphatase | Back alignment and domain information |
|---|
| >TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase | Back alignment and domain information |
|---|
| >COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672 | Back alignment and domain information |
|---|
| >PRK11133 serB phosphoserine phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein | Back alignment and domain information |
|---|
| >TIGR01686 FkbH FkbH-like domain | Back alignment and domain information |
|---|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
| >PHA03398 viral phosphatase superfamily protein; Provisional | Back alignment and domain information |
|---|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
| >PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A | Back alignment and domain information |
|---|
| >PRK11590 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01664 DNA-3'-Pase DNA 3'-phosphatase | Back alignment and domain information |
|---|
| >PRK10748 flavin mononucleotide phosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK11009 aphA acid phosphatase/phosphotransferase; Provisional | Back alignment and domain information |
|---|
| >PLN02770 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
| >PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea | Back alignment and domain information |
|---|
| >TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic | Back alignment and domain information |
|---|
| >PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 [] | Back alignment and domain information |
|---|
| >KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
| >TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254 | Back alignment and domain information |
|---|
| >PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase) | Back alignment and domain information |
|---|
| >PRK14988 GMP/IMP nucleotidase; Provisional | Back alignment and domain information |
|---|
| >PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B | Back alignment and domain information |
|---|
| >PRK10826 2-deoxyglucose-6-phosphatase; Provisional | Back alignment and domain information |
|---|
| >PLN02779 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
| >smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen | Back alignment and domain information |
|---|
| >PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria | Back alignment and domain information |
|---|
| >PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins | Back alignment and domain information |
|---|
| >PRK09449 dUMP phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family | Back alignment and domain information |
|---|
| >TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase | Back alignment and domain information |
|---|
| >PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification [] | Back alignment and domain information |
|---|
| >PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed | Back alignment and domain information |
|---|
| >PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins | Back alignment and domain information |
|---|
| >PF14954 LIX1: Limb expression 1 | Back alignment and domain information |
|---|
| >cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins | Back alignment and domain information |
|---|
| >TIGR01261 hisB_Nterm histidinol-phosphatase | Back alignment and domain information |
|---|
| >PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 788 | ||||
| 3ef1_A | 442 | The Structure Of Fcp1, An Essential Rna Polymerase | 2e-05 | ||
| 3ef0_A | 372 | The Structure Of Fcp1, An Essential Rna Polymerase | 4e-05 |
| >pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442 | Back alignment and structure |
|
| >pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 3e-18
Identities = 96/670 (14%), Positives = 195/670 (29%), Gaps = 173/670 (25%)
Query: 130 LGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIA-REPDQIRASGMSAELKRYM 188
G + I+ ++ + K +D +S ++ E D I S + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQD---MPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 189 DDRTLLKQYTEN-------DCVMDNGK--VFKVQQEEVPPP------SENHERIVRPVIR 233
L E + + N K + ++ E+ P E +R+
Sbjct: 68 FW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 234 IPERNLVLTRINPENRDTSVLVRLRP-----------------AWEDLRSYLIAKGRKRF 276
+ N+ +R+ P + L+ LRP A + SY + + + F
Sbjct: 126 FAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDF 182
Query: 277 EVYVCTMAERDYA---LEM----WRLLDPEGHLIGSKQLLDRVVCVK--SGSRKSLLNVF 327
+++ + + LEM +DP D +K S ++ L
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-----SRSDHSSNIKLRIHSIQAELRRL 237
Query: 328 QRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARN--VA 385
+ + +V+ + V K AF + +L R V
Sbjct: 238 LKSKPYENCLLVLLN---VQNAK------AWNAFN----------LSCKILLTTRFKQVT 278
Query: 386 CNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAPDVSNYLMSEDANFAPNGSTNAPMSE 445
+ L S DE +L + YL + T P
Sbjct: 279 DFLSAATTTHIS---LDHHSMTLTPDEVKSL-----LLKYLDCRPQDLPREVLTTNPRRL 330
Query: 446 GLNGLEVERRLNQSDE-KYVVDSGLPSMKNSS--DLKSET--------SLLPVAVASNAT 494
+ + L D K+V L ++ SS L+ S+ P +A
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAH 386
Query: 495 VPATVVPSQKPGLLGAPIRRDNSSMKHGFDLRNQNSAQPPLPKLHGQGGWIVEEEVNRVL 554
+P ++ + I+ D +V + L
Sbjct: 387 IPTILLSL----IWFDVIKSDVMV--------------------------VVNKLHKYSL 416
Query: 555 PNNRPVSIATGLPSHASQAKGEEAIMAHDLHKQ-----NLPPASQPPEIGVSQN------ 603
+P +PS + K + LH+ N+P ++
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEY-ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 604 ----HVSSNSREFLTEGGKTNLLPS-YLSIGVLQE-IGKRCSSKVEFRSVVSTSKDLQFS 657
H+ + + L +L L++ I ++ S+++T + L+
Sbjct: 476 HIGHHLKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-- 528
Query: 658 VEVLFTGEKIGVGMGKTRKDAQQQAAENAL-HYL--AEKYVAYITPRSGAMDRDFDKLSL 714
F I D + + NA+ +L E+ + + D +++L
Sbjct: 529 ----FYKPYI------CDNDPKYERLVNAILDFLPKIEENL-ICSK-----YTDLLRIAL 572
Query: 715 ENENGFLWDT 724
E+ +++
Sbjct: 573 MAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 | Back alignment and structure |
|---|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98 | Back alignment and structure |
|---|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76 | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
|---|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76 | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99 | Back alignment and structure |
|---|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84 | Back alignment and structure |
|---|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
|---|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103 | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
|---|
| >1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Length = 117 | Back alignment and structure |
|---|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
| >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Length = 94 | Back alignment and structure |
|---|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69 | Back alignment and structure |
|---|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128 | Back alignment and structure |
|---|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71 | Back alignment and structure |
|---|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88 | Back alignment and structure |
|---|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73 | Back alignment and structure |
|---|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
|---|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| 3ef1_A | 442 | RNA polymerase II subunit A C-terminal domain phos | 99.97 | |
| 3ef0_A | 372 | RNA polymerase II subunit A C-terminal domain phos | 99.97 | |
| 3qle_A | 204 | TIM50P; chaperone, mitochondrion, preprotein trans | 99.9 | |
| 2ght_A | 181 | Carboxy-terminal domain RNA polymerase II polypept | 99.85 | |
| 2hhl_A | 195 | CTD small phosphatase-like protein; CTD phosphatas | 99.82 | |
| 3shq_A | 320 | UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila | 99.79 | |
| 3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA bind | 99.72 | |
| 2dix_A | 84 | Interferon-inducible double stranded RNA- dependen | 99.72 | |
| 3llh_A | 90 | RISC-loading complex subunit tarbp2; DSRBD, DSRM, | 99.71 | |
| 3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism | 99.71 | |
| 1x49_A | 97 | Interferon-induced, double-stranded RNA- activated | 99.7 | |
| 3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA | 99.7 | |
| 1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; pro | 99.7 | |
| 1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, sta | 99.7 | |
| 2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA bin | 99.69 | |
| 2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrol | 99.69 | |
| 1t4n_A | 94 | Ribonuclease III; DSRBD, RNA-binding, hydrolase; N | 99.68 | |
| 1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); struc | 99.67 | |
| 1x48_A | 88 | Interferon-induced, double-stranded RNA- activated | 99.67 | |
| 2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editin | 99.67 | |
| 1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain | 99.67 | |
| 1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, N | 99.66 | |
| 1t4o_A | 117 | Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro | 99.66 | |
| 2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM do | 99.63 | |
| 2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding prot | 99.63 | |
| 1uil_A | 113 | Double-stranded RNA-binding motif; structural geno | 99.62 | |
| 2l33_A | 91 | Interleukin enhancer-binding factor 3; structural | 99.62 | |
| 1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double | 99.58 | |
| 2ljh_A | 114 | Double-stranded RNA-specific editase ADAR; DSRBD, | 99.58 | |
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 99.54 | |
| 2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editin | 99.54 | |
| 3p1x_A | 75 | Interleukin enhancer-binding factor 3; structural | 99.47 | |
| 2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 99.44 | |
| 1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural ge | 99.43 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 99.42 | |
| 3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III | 99.32 | |
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 99.27 | |
| 2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 99.26 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 99.25 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 99.17 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 99.03 | |
| 3rv0_A | 341 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.01 | |
| 3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 98.86 | |
| 3m9l_A | 205 | Hydrolase, haloacid dehalogenase-like family; HAD | 97.57 | |
| 3kbb_A | 216 | Phosphorylated carbohydrates phosphatase TM_1254; | 97.5 | |
| 1nnl_A | 225 | L-3-phosphoserine phosphatase; PSP, HPSP, phospho- | 97.36 | |
| 1rku_A | 206 | Homoserine kinase; phosphoserine phosphatase, phos | 97.19 | |
| 3e58_A | 214 | Putative beta-phosphoglucomutase; structu genomics | 97.17 | |
| 3m1y_A | 217 | Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, | 97.15 | |
| 2pib_A | 216 | Phosphorylated carbohydrates phosphatase TM_1254; | 97.11 | |
| 3kzx_A | 231 | HAD-superfamily hydrolase, subfamily IA, variant; | 97.02 | |
| 3ddh_A | 234 | Putative haloacid dehalogenase-like family hydrol; | 97.01 | |
| 1yns_A | 261 | E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo | 96.95 | |
| 3kd3_A | 219 | Phosphoserine phosphohydrolase-like protein; csgid | 96.94 | |
| 4dcc_A | 229 | Putative haloacid dehalogenase-like hydrolase; mag | 96.9 | |
| 3fvv_A | 232 | Uncharacterized protein; unknown function, structu | 96.83 | |
| 3ed5_A | 238 | YFNB; APC60080, bacillus subtilis subsp. subtilis | 96.81 | |
| 3s6j_A | 233 | Hydrolase, haloacid dehalogenase-like family; stru | 96.77 | |
| 2fea_A | 236 | 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate | 96.77 | |
| 3sd7_A | 240 | Putative phosphatase; structural genomics, haloaci | 96.73 | |
| 4eek_A | 259 | Beta-phosphoglucomutase-related protein; hydrolase | 96.72 | |
| 3dv9_A | 247 | Beta-phosphoglucomutase; structural genomics, APC6 | 96.66 | |
| 3u26_A | 234 | PF00702 domain protein; structural genomics, PSI-b | 96.65 | |
| 1zrn_A | 232 | L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud | 96.64 | |
| 2b0c_A | 206 | Putative phosphatase; alpha-D-glucose-1-phosphate, | 96.63 | |
| 3umb_A | 233 | Dehalogenase-like hydrolase; 2.20A {Ralstonia sola | 96.56 | |
| 2i6x_A | 211 | Hydrolase, haloacid dehalogenase-like family; HAD | 96.54 | |
| 3um9_A | 230 | Haloacid dehalogenase, type II; haloacid dehalogen | 96.53 | |
| 3nas_A | 233 | Beta-PGM, beta-phosphoglucomutase; PSI, structural | 96.51 | |
| 4ap9_A | 201 | Phosphoserine phosphatase; hydrolase, haloacid deh | 96.49 | |
| 4eze_A | 317 | Haloacid dehalogenase-like hydrolase; magnesium bi | 96.45 | |
| 3mc1_A | 226 | Predicted phosphatase, HAD family; PSI2, NYSGXRC, | 96.45 | |
| 3iru_A | 277 | Phoshonoacetaldehyde hydrolase like protein; phosp | 96.43 | |
| 3smv_A | 240 | S-(-)-azetidine-2-carboxylate hydrolase; haloacid | 96.43 | |
| 2p11_A | 231 | Hypothetical protein; putative haloacid dehalogena | 96.39 | |
| 2no4_A | 240 | (S)-2-haloacid dehalogenase IVA; HAD superfamily, | 96.37 | |
| 3nuq_A | 282 | Protein SSM1, putative nucleotide phosphatase; sup | 96.32 | |
| 1qq5_A | 253 | Protein (L-2-haloacid dehalogenase); hydrolase; 1. | 96.32 | |
| 2zg6_A | 220 | Putative uncharacterized protein ST2620, probable | 96.25 | |
| 3k1z_A | 263 | Haloacid dehalogenase-like hydrolase domain-conta | 96.21 | |
| 2w43_A | 201 | Hypothetical 2-haloalkanoic acid dehalogenase; hyd | 96.19 | |
| 3p96_A | 415 | Phosphoserine phosphatase SERB; ssgcid, structural | 96.19 | |
| 3qxg_A | 243 | Inorganic pyrophosphatase; hydrolase, magnesium bi | 96.18 | |
| 3umc_A | 254 | Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru | 96.15 | |
| 2go7_A | 207 | Hydrolase, haloacid dehalogenase-like family; stru | 96.06 | |
| 3umg_A | 254 | Haloacid dehalogenase; defluorinase, hydrolase; 2. | 96.0 | |
| 3l5k_A | 250 | Protein GS1, haloacid dehalogenase-like hydrolase | 95.97 | |
| 4g9b_A | 243 | Beta-PGM, beta-phosphoglucomutase; HAD, putative p | 95.89 | |
| 3skx_A | 280 | Copper-exporting P-type ATPase B; P1B-ATPase, ATP | 95.7 | |
| 2kou_A | 102 | Dicer-like protein 4; ATP-binding, endonuclease, h | 95.43 | |
| 2p9j_A | 162 | Hypothetical protein AQ2171; secsg, riken, PSI, st | 95.37 | |
| 2qlt_A | 275 | (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac | 95.02 | |
| 4gib_A | 250 | Beta-phosphoglucomutase; rossmann fold, HAD-like, | 95.0 | |
| 2fi1_A | 190 | Hydrolase, haloacid dehalogenase-like family; stru | 94.89 | |
| 3vay_A | 230 | HAD-superfamily hydrolase; rossmann fold, haloacid | 94.87 | |
| 2g80_A | 253 | Protein UTR4; YEL038W, UTR4 protein (unknown trans | 94.81 | |
| 2i7d_A | 193 | 5'(3')-deoxyribonucleotidase, cytosolic type; hydr | 94.8 | |
| 1l7m_A | 211 | Phosphoserine phosphatase; rossmann fold, four-hel | 94.8 | |
| 2gmw_A | 211 | D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi | 94.78 | |
| 3bwv_A | 180 | Putative 5'(3')-deoxyribonucleotidase; NP_764060.1 | 94.77 | |
| 2i33_A | 258 | Acid phosphatase; HAD superfamily, hydrolase; 1.57 | 94.68 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 94.34 | |
| 1q92_A | 197 | 5(3)-deoxyribonucleotidase; alpha-beta rossman fol | 93.87 | |
| 3ocu_A | 262 | Lipoprotein E; hydrolase, outer membrane; HET: NMN | 93.87 | |
| 1k1e_A | 180 | Deoxy-D-mannose-octulosonate 8-phosphate phosphat; | 93.77 | |
| 3mmz_A | 176 | Putative HAD family hydrolase; structural genomics | 93.36 | |
| 3pct_A | 260 | Class C acid phosphatase; hydrolase, outer membran | 92.73 | |
| 3n28_A | 335 | Phosphoserine phosphatase; HAD family hydrolase, s | 92.7 | |
| 3mn1_A | 189 | Probable YRBI family phosphatase; structural genom | 92.67 | |
| 3nvb_A | 387 | Uncharacterized protein; protein FKBH, protein fkb | 92.44 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 92.33 | |
| 3e8m_A | 164 | Acylneuraminate cytidylyltransferase; 2-keto-3-deo | 91.85 | |
| 4dw8_A | 279 | Haloacid dehalogenase-like hydrolase; HAD, putativ | 91.64 | |
| 3dao_A | 283 | Putative phosphatse; structural genomics, joint ce | 91.57 | |
| 3ij5_A | 211 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; | 90.46 | |
| 2fpr_A | 176 | Histidine biosynthesis bifunctional protein HISB; | 90.45 | |
| 2r8e_A | 188 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphata | 90.45 | |
| 2ah5_A | 210 | COG0546: predicted phosphatases; MCSG, structural | 90.41 | |
| 3ib6_A | 189 | Uncharacterized protein; structural genomics, unkn | 90.37 | |
| 2wm8_A | 187 | MDP-1, magnesium-dependent phosphatase 1; haloacid | 89.75 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 87.82 | |
| 1y8a_A | 332 | Hypothetical protein AF1437; structural genomics, | 87.82 | |
| 3n07_A | 195 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; | 87.76 | |
| 2db2_A | 119 | KIAA0890 protein; DSRM domain, structural genomics | 86.81 | |
| 2hi0_A | 240 | Putative phosphoglycolate phosphatase; YP_619066.1 | 86.66 | |
| 2hcf_A | 234 | Hydrolase, haloacid dehalogenase-like family; NP_6 | 86.62 | |
| 3qnm_A | 240 | Haloacid dehalogenase-like hydrolase; structural g | 86.58 | |
| 3n1u_A | 191 | Hydrolase, HAD superfamily, subfamily III A; struc | 86.39 | |
| 2hoq_A | 241 | Putative HAD-hydrolase PH1655; haloacid dehalogena | 85.79 | |
| 2gfh_A | 260 | Haloacid dehalogenase-like hydrolase domain conta; | 85.57 | |
| 2hdo_A | 209 | Phosphoglycolate phosphatase; NP_784602.1, structu | 85.56 | |
| 4ex6_A | 237 | ALNB; modified rossman fold, phosphatase, magnesiu | 84.42 | |
| 2nyv_A | 222 | Pgpase, PGP, phosphoglycolate phosphatase; structu | 84.23 | |
| 2hsz_A | 243 | Novel predicted phosphatase; structural genomics, | 83.16 | |
| 3r4c_A | 268 | Hydrolase, haloacid dehalogenase-like hydrolase; h | 81.94 | |
| 2pke_A | 251 | Haloacid delahogenase-like family hydrolase; NP_63 | 81.9 | |
| 3gyg_A | 289 | NTD biosynthesis operon putative hydrolase NTDB; P | 80.72 | |
| 3fzq_A | 274 | Putative hydrolase; YP_001086940.1, putative haloa | 80.64 |
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=292.34 Aligned_cols=162 Identities=26% Similarity=0.500 Sum_probs=131.4
Q ss_pred hHHHhhhccceEEEEeCCcceeecccccchHHHHHHHHHHhhcCCchhhhhchhHHHHHhhchHHHHHhhhccceeeeCC
Q 003896 128 SCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASGMSAELKRYMDDRTLLKQYTENDCVMDNG 207 (788)
Q Consensus 128 ~~~~lL~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~~dP~~~~~~~~E~kr~~~D~~lL~q~~~~d~V~~nG 207 (788)
...+||..|||+||+|||||||||+..+ .+++|+.++.||++.+ .+++.+|+-
T Consensus 17 ~~~rll~~~Kl~LVLDLDeTLiHs~~~~-------~~~~~~~~~~~~~~~~--~~dv~~F~l------------------ 69 (442)
T 3ef1_A 17 NVKRLRQEKRLSLIVXLDQTIIHATVDP-------TVGEWMSDPGNVNYDV--LRDVRSFNL------------------ 69 (442)
T ss_dssp HHHHHHHTTCEEEEECCBTTTEEEECCT-------HHHHHHTCTTSTTTGG--GTTCEEEEE------------------
T ss_pred HHHHHHhcCCeEEEEeeccceecccccc-------ccchhccCCCCcchhh--hccccceee------------------
Confidence 4578999999999999999999999764 4689999999999742 233333320
Q ss_pred eEEEecccccCCCCCCccccccceeecCCCcceeeecCCCCCCceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchH
Q 003896 208 KVFKVQQEEVPPPSENHERIVRPVIRIPERNLVLTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERD 287 (788)
Q Consensus 208 ~~~~~q~E~v~~~~d~~~~~~RpviRl~~~n~~ltrI~P~~r~t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~ 287 (788)
...|....++|||++||| +.+||+ +++++|||+|||||.+.
T Consensus 70 -----------------------------------~~~~~~~~~~~~V~~RPg---l~eFL~-~ls~~yEivIfTas~~~ 110 (442)
T 3ef1_A 70 -----------------------------------QEGPSGYTSCYYIKFRPG---LAQFLQ-KISELYELHIYTMGTKA 110 (442)
T ss_dssp -----------------------------------EETTTTEEEEEEEEECTT---HHHHHH-HHTTTEEEEEECSSCHH
T ss_pred -----------------------------------eeccCCceeEEEEEeCCC---HHHHHH-HHhCCcEEEEEcCCCHH
Confidence 011222357899999999 888999 89999999999999999
Q ss_pred HHHHHHHhhCCCCCccccccccCceEeecC-C--CcccHhhhcccCCCCCCeEEEEeCCccccccCCCCCeEEecCcCCC
Q 003896 288 YALEMWRLLDPEGHLIGSKQLLDRVVCVKS-G--SRKSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPY 364 (788)
Q Consensus 288 YA~~IlrLLDPdgklF~~r~l~~RIisres-g--~~KsL~rLf~~g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py 364 (788)
||..|+++|||+++||. .|+++|++ | ..|+|++||+ +++++||||||++++|..++ |+|.|. +|.||
T Consensus 111 YA~~Vl~~LDp~~~~f~-----~Rl~sRd~cg~~~~KdL~~ll~---rdl~~vvIIDd~p~~~~~~p-N~I~I~-~~~fF 180 (442)
T 3ef1_A 111 YAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLFP---CDTSMVVVIDDRGDVWDWNP-NLIKVV-PYEFF 180 (442)
T ss_dssp HHHHHHHHHCTTSTTTT-----TCEECTTTSSCSSCCCGGGTCS---SCCTTEEEEESCSGGGTTCT-TEEECC-CCCCS
T ss_pred HHHHHHHHhccCCcccc-----ceEEEecCCCCceeeehHHhcC---CCcceEEEEECCHHHhCCCC-CEEEcC-Ccccc
Confidence 99999999999999999 45555533 3 3899999987 48999999999999999998 788765 56656
Q ss_pred C
Q 003896 365 Y 365 (788)
Q Consensus 365 ~ 365 (788)
.
T Consensus 181 ~ 181 (442)
T 3ef1_A 181 V 181 (442)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} | Back alignment and structure |
|---|
| >2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A | Back alignment and structure |
|---|
| >2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
|---|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
|---|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A | Back alignment and structure |
|---|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
|---|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A | Back alignment and structure |
|---|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B | Back alignment and structure |
|---|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A | Back alignment and structure |
|---|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
|---|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
|---|
| >3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* | Back alignment and structure |
|---|
| >3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
| >1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A | Back alignment and structure |
|---|
| >1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A | Back alignment and structure |
|---|
| >3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} | Back alignment and structure |
|---|
| >3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
| >3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A | Back alignment and structure |
|---|
| >3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp} | Back alignment and structure |
|---|
| >4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A | Back alignment and structure |
|---|
| >3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis} | Back alignment and structure |
|---|
| >3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A | Back alignment and structure |
|---|
| >3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20 | Back alignment and structure |
|---|
| >3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
| >4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A | Back alignment and structure |
|---|
| >3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} | Back alignment and structure |
|---|
| >3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A | Back alignment and structure |
|---|
| >1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A | Back alignment and structure |
|---|
| >2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2 | Back alignment and structure |
|---|
| >3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum} | Back alignment and structure |
|---|
| >2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP} | Back alignment and structure |
|---|
| >3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis} | Back alignment and structure |
|---|
| >4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A | Back alignment and structure |
|---|
| >4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp} | Back alignment and structure |
|---|
| >3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas} | Back alignment and structure |
|---|
| >2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A* | Back alignment and structure |
|---|
| >3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A* | Back alignment and structure |
|---|
| >1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A | Back alignment and structure |
|---|
| >2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
| >2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A | Back alignment and structure |
|---|
| >3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
| >3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A | Back alignment and structure |
|---|
| >3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii} | Back alignment and structure |
|---|
| >3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
| >3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* | Back alignment and structure |
|---|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile} | Back alignment and structure |
|---|
| >2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3 | Back alignment and structure |
|---|
| >3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22 | Back alignment and structure |
|---|
| >2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A* | Back alignment and structure |
|---|
| >1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A* | Back alignment and structure |
|---|
| >2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A* | Back alignment and structure |
|---|
| >3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
| >2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A | Back alignment and structure |
|---|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
| >1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A | Back alignment and structure |
|---|
| >3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A | Back alignment and structure |
|---|
| >1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A* | Back alignment and structure |
|---|
| >3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis} | Back alignment and structure |
|---|
| >3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida} | Back alignment and structure |
|---|
| >3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae} | Back alignment and structure |
|---|
| >3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A | Back alignment and structure |
|---|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
| >3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A* | Back alignment and structure |
|---|
| >4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A | Back alignment and structure |
|---|
| >3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale} | Back alignment and structure |
|---|
| >3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis} | Back alignment and structure |
|---|
| >2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A* | Back alignment and structure |
|---|
| >2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A* | Back alignment and structure |
|---|
| >2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A | Back alignment and structure |
|---|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24 | Back alignment and structure |
|---|
| >3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae} | Back alignment and structure |
|---|
| >2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} | Back alignment and structure |
|---|
| >2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A | Back alignment and structure |
|---|
| >2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A | Back alignment and structure |
|---|
| >2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A | Back alignment and structure |
|---|
| >2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
| >3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 788 | ||||
| d1o0wa2 | 69 | d.50.1.1 (A:168-236) RNase III, C-terminal domain | 6e-08 | |
| d1x47a1 | 85 | d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie | 7e-07 | |
| d1x48a1 | 76 | d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p | 2e-05 | |
| d2nuga2 | 68 | d.50.1.1 (A:151-218) RNase III, C-terminal domain | 2e-05 | |
| d1qu6a2 | 89 | d.50.1.1 (A:91-179) dsRNA-dependent protein kinase | 3e-05 | |
| d1whna_ | 128 | d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, | 3e-05 | |
| d2b7va1 | 71 | d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R | 9e-05 | |
| d1qu6a1 | 90 | d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p | 3e-04 | |
| d2dmya1 | 84 | d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin | 3e-04 | |
| d1t4oa_ | 81 | d.50.1.1 (A:) RNase III, C-terminal domain {Baker' | 4e-04 | |
| d1ta0a_ | 181 | c.108.1.16 (A:) Carboxy-terminal domain RNA polyme | 8e-04 | |
| d1whqa_ | 99 | d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { | 0.002 | |
| d1uila_ | 113 | d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { | 0.002 | |
| d1x49a1 | 85 | d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p | 0.003 |
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 48.0 bits (114), Expect = 6e-08
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 631 LQEIGKRCSSKVEFRSVVSTSK---DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENAL 687
LQEI + +V T K D F VEV G+ I G G+T+K+A+++AA A
Sbjct: 6 LQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAY 65
Query: 688 HYL 690
L
Sbjct: 66 EKL 68
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68 | Back information, alignment and structure |
|---|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 | Back information, alignment and structure |
|---|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 | Back information, alignment and structure |
|---|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 | Back information, alignment and structure |
|---|
| >d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 | Back information, alignment and structure |
|---|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113 | Back information, alignment and structure |
|---|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| d1ta0a_ | 181 | Carboxy-terminal domain RNA polymerase II polypept | 99.93 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 99.74 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.71 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.68 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 99.67 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 99.67 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.66 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.65 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.64 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 99.64 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 99.62 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 99.59 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 99.56 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.54 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 99.49 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 99.49 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.48 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 99.3 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.3 | |
| d1u7pa_ | 164 | Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu | 97.82 | |
| d2go7a1 | 204 | Hypothetical protein SP2064 {Streptococcus pneumon | 97.67 | |
| d2ah5a1 | 210 | predicted phosphatase SP0104 {Streptococcus pneumo | 97.62 | |
| d2hsza1 | 224 | Phosphoglycolate phosphatase Gph {Haemophilus somn | 97.57 | |
| d1te2a_ | 218 | Phosphatase YniC {Escherichia coli [TaxId: 562]} | 97.49 | |
| d1x42a1 | 230 | Hypothetical protein PH0459 {Archaeon Pyrococcus h | 97.24 | |
| d2hdoa1 | 207 | Phosphoglycolate phosphatase {Lactobacillus planta | 97.19 | |
| d2hcfa1 | 228 | Hypothetical protein CT1708 {Chlorobium tepidum [T | 97.01 | |
| d2feaa1 | 226 | 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate | 96.88 | |
| d1nnla_ | 217 | Phosphoserine phosphatase {Human (Homo sapiens) [T | 96.72 | |
| d1swva_ | 257 | Phosphonoacetaldehyde hydrolase {Bacillus cereus [ | 96.7 | |
| d1zs9a1 | 253 | E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} | 96.37 | |
| d2fdra1 | 222 | Hypothetical protein Atu0790 {Agrobacterium tumefa | 96.21 | |
| d1ltqa1 | 149 | Polynucleotide kinase, phosphatase domain {Bacteri | 96.05 | |
| d1zrna_ | 220 | L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s | 95.93 | |
| d2fi1a1 | 187 | Putative hydrolase SP0805 {Streptococcus pneumonia | 95.89 | |
| d1o08a_ | 221 | beta-Phosphoglucomutase {Lactococcus lactis [TaxId | 95.49 | |
| d1cr6a1 | 222 | Epoxide hydrolase, N-terminal domain {Mouse (Mus m | 94.11 | |
| d2b0ca1 | 197 | Putative phosphatase YihX {Escherichia coli [TaxId | 93.77 | |
| d1qq5a_ | 245 | L-2-Haloacid dehalogenase, HAD {Xanthobacter autot | 93.02 | |
| d2obba1 | 122 | Hypothetical protein BT0820 {Bacteroides thetaiota | 90.79 | |
| d2fuea1 | 244 | Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: | 84.73 | |
| d2amya1 | 243 | Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: | 84.42 | |
| d1j97a_ | 210 | Phosphoserine phosphatase {Archaeon Methanococcus | 83.03 | |
| d1q92a_ | 195 | 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo | 82.8 | |
| d2bdua1 | 291 | Cytosolic 5'-nucleotidase III {Mouse (Mus musculus | 82.61 | |
| d2b30a1 | 283 | PFL1270w orthologue {Plasmodium vivax [TaxId: 5855 | 82.54 | |
| d2gfha1 | 247 | N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m | 80.84 |
| >d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NLI interacting factor-like phosphatase domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-26 Score=223.51 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=88.7
Q ss_pred CceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhccc
Q 003896 250 DTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQR 329 (788)
Q Consensus 250 ~t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~ 329 (788)
...+||++||| +.+||+ .++++|||+|||||++.||..|++.|||.+.++ .+.+++++.+...+..|+|+.++.
T Consensus 49 ~~~~~v~~RP~---l~eFL~-~l~~~yei~I~Ta~~~~YA~~il~~ldp~~~~~-~~~~r~~c~~~~~~~~KdL~~l~~- 122 (181)
T d1ta0a_ 49 VHQVYVLKRPH---VDEFLQ-RMGELFECVLFTASLAKYADPVADLLDKWGAFR-ARLFRESCVFHRGNYVKDLSRLGR- 122 (181)
T ss_dssp EEEEEEEECTT---HHHHHH-HHHHHSEEEEECSSCHHHHHHHHHHHCSSCCEE-EEECGGGSEEETTEEECCGGGSCS-
T ss_pred eeeeEEecCCC---HHHHHH-HHHhceEEEEEcCCcHHHHHHHHHHhccCCcee-EEEEeeeeeecCCcccccHhhcCC-
Confidence 44689999999 899999 899999999999999999999999999987755 455667766555556999998765
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEecCc
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAF 361 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y 361 (788)
+.+.||||||++.+|..++.|+|+|.+++
T Consensus 123 ---~l~~vvivDd~~~~~~~~~~N~I~I~~f~ 151 (181)
T d1ta0a_ 123 ---DLRRVLILDNSPASYVFHPDNAVPVASWF 151 (181)
T ss_dssp ---CGGGEEEECSCGGGGTTCGGGBCCCCCCS
T ss_pred ---CHHHeEEEcCChhhhhcCccCeeEecCcC
Confidence 68999999999999999999999876643
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]} | Back information, alignment and structure |
|---|
| >d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
| >d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
| >d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]} | Back information, alignment and structure |
|---|
| >d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
| >d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
| >d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
| >d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|