Citrus Sinensis ID: 003898

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------79
MQMESQLSMNSEVHLHPRNTPVQDEDPRVVASSTLDNVILQQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFVEALEHQLLKDRKRSVRKRPSQRDNYSPTVPTPIPNQSRTSGQDTCTVKLVLVDSQNIQKLGPAKGSLKRNVNIGINRSNNKADSATLKPRQRRKPADSISSAAYKKWEKAAIAGVSLVADAAEHLERTSTDKEVERQQEHTALETADKVLPPLPTISPTLFAEGNVQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGCVPSFHNINVENKKEQIVDSVPGRVPSTSDQSENFVDPYKKLTSVKENDTFATSSSSMPKETSSYISASKRDIADTSDPAANVSWPRKETGNEIITGQVEDMGDERLSSGTALSAGEWADSLTNISVGDLLAEVPHDLDAAPVAESSQCLQQIPFSCDSFDAAIAAHISRHQNKMGALSTLASHASSIWDAEETCDAFSFQKNPVLCNEVSRLPDIAPPAADCEQIARTNSELLDAEGPTDYPAHEDPMDDCLRNPHTLDNSVNDFNGLTDIYWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKKEPTPTVEAGETASFSDFKIGSQG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcHHHHHHHHcccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHccccccccccEEEccHHHHHHcccccccccccccccHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
cccEEEEEccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccEEccccccEEEEEccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHccccccccccEEEEcccccHHHcccccccccccccEHHHHHHHcccccEEEEEEccccccHHHccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHcccHHHHccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHccEEEcccccccccEEEEEEEEEcccEEcccc
mqmesqlsmnsevhlhprntpvqdedprvvassTLDNVILQqsakrptrqwAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKllgpglcldaknskdTNAAMLRWWSLLEKYSCkasklhlkpRRFKIFVEALEHQLLKDRkrsvrkrpsqrdnysptvptpipnqsrtsgqdtcTVKLVLVDSqniqklgpakgslkrnvniginrsnnkadsatlkprqrrkpadsisSAAYKKWEKAAIAGVSLVADAAEHLERTSTDKEVERQQEHTALetadkvlpplptisptlfaegnvqtpvklklqlypiddgtrkalemdnhnphlelTLSTRKKISSVLEHLNRkwgnasvasgelmlfpygaqrenlvgyqrwtqdsvFSAADVYAmigsppmfrlrygwfsdtelgyvaphapsasgcvpsfhninvenkkeqivdsvpgrvpstsdqsenfvdpykkltsvkendtfatssssmpketssyisaskrdiadtsdpaanvswprketgneiitgqvedmgderlssgtalsagewadsltnisvgdllaevphdldaapvaessqclqqipfscdSFDAAIAAHISRHQNKMGALSTLASHAssiwdaeetcdafsfqknpvlcnevsrlpdiappaadcEQIARTNSelldaegptdypahedpmddclrnphtldnsvndfngltdiywpdslgpldldipsskyrgediilsdsLGGLNRLIASSLDafqncsffgldkkeptptveagetasfsdfkigsqg
mqmesqlsmNSEVHLHPRNTPVQDEDPRVVASSTLdnvilqqsakrptrqWAAWTREEEESFFTALRQvgknfekithrvrsknkdqvrhYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFVEALEHqllkdrkrsvrkrpsqrdnysptvptpipnqsrtsgQDTCTVKLVLVDSqniqklgpakgslkrnvniginrsnnkadsatlkprqrrkpadsisSAAYKKWEKAAIAGVSLVADAAEHLERTSTDKEVERQQEHtaletadkvlpplPTISPTLFAEGNVQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGCVPSFHNINVENKKeqivdsvpgrvpstsdqsenfvdpykKLTSVKEndtfatssssmpkeTSSYIsaskrdiadtsdpaanvswprketgneiITGQVEDMGDERLSSGTALSAGEWADSLTNISVGDLLAEVPHDLDAAPVAESSQCLQQIPFSCDSFDAAIAAHISRHQNKMGALSTLASHASSIWDAEETCDAFSFQKNPVLCNEVSRLPDIAPPAADCEQIARTNSELLDAEGPTDYPAHEDPMDDCLRNPHTLDNSVNDFNGLTDIYWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKkeptptveagetasfsdfkigsqg
MQMESQLSMNSEVHLHPRNTPVQDEDPRVVASSTLDNVILQQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFVEALEHQLLKDRKRSVRKRPSQRDNYSPTVPTPIPNQSRTSGQDTCTVKLVLVDSQNIQKLGPAKGSLKRNVNIGINRSNNKADSATLKPRQRRKPADSISSAAYKKWEKAAIAGVSLVADAAEHLERTSTDKEVERQQEHTALETADKVLPPLPTISPTLFAEGNVQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGCVPSFHNINVENKKEQIVDSVPGRVPSTSDQSENFVDPYKKLTSVKENDTFATssssmpketssYISASKRDIADTSDPAANVSWPRKETGNEIITGQVEDMGDERLSSGTALSAGEWADSLTNISVGDLLAEVPHDLDAAPVAESSQCLQQIPFSCDSFDAAIAAHISRHQNKMGALSTLASHASSIWDAEETCDAFSFQKNPVLCNEVSRLPDIAPPAADCEQIARTNSELLDAEGPTDYPAHEDPMDDCLRNPHTLDNSVNDFNGLTDIYWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKKEPTPTVEAGETASFSDFKIGSQG
*****************************************************************LRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFVEALEHQL*************************************CTVKLVLVDSQNI**********************************************YKKWEKAAIAGVSLVA**********************************PTISPTLFAEGNVQTPVKLKLQLYPIDDGTR***********LELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGCVPSFHNINV*********************************************************************************************************GEWADSLTNISVGDLLAEVPHDLDAAPVAESSQCLQQIPFSCDSFDAAIAAHISRHQNKMGALSTLASHASSIWDAEETCDAFSFQKNPVLCNEVSRLPDI*****************************************TLDNSVNDFNGLTDIYWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGL**************************
*******************************************************REEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGP*********KDTNAAMLRWWSLLEK*************RFKIF*****************************************************************************************************************************************************************************KLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDT************************************************************************************************************************************ADSLTNISVGDLL***********************FSCDSFDAAIAA**********************WDAEETCDAFSF********************************************************************LTDIYWPDSLGPLDLDIPSSKYRG**IILSDSLGGLNRLIASSLDAFQNCSFFGLDKK***********ASFSDFKIGS**
***********EVHLHPRNTPVQDEDPRVVASSTLDNVILQQS**********WTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFVEALEHQLLK*****************PTVPTPIPNQSRTSGQDTCTVKLVLVDSQNIQKLGPAKGSLKRNVNIGINRSNNKA******************SAAYKKWEKAAIAGVSLVADAAEHLE*************HTALETADKVLPPLPTISPTLFAEGNVQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGCVPSFHNINVENKKEQIVDSVPGRVPSTSDQSENFVDPYKKLTSVKEN*******************ASKRDIADTSDPAANVSWPRKETGNEIITGQVEDMGDERLSSGTALSAGEWADSLTNISVGDLLAEVPHDLDAAPVAESSQCLQQIPFSCDSFDAAIAAHISRHQNKMGALSTLASHASSIWDAEETCDAFSFQKNPVLCNEVSRLPDIAPPAADCEQIARTNSELLDAEGPTDYPAHEDPMDDCLRNPHTLDNSVNDFNGLTDIYWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKKEPTPTVEAGETASFSDFKIGSQG
**********SEV*************************************WAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFVEALEHQLLKDRKRS******************************CTVKLVLVDSQNIQKLGPAKGSLKRNVNIG************************I*SAAYKKWEKAAIAGVSLVADAAEHLERT*************************************VQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGY********************************************************************************************************ITGQVED****RLSSGTALSAGEWADSLTNISVGDLLAEVPHDLDAAP*AESSQCLQQIPFSCDSFDAAIAAHISRHQNK******************ETCDAFSFQ****************************************************************FNGLTDIYWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKKEPTPTVEAGETASFSDFKIGS**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQMESQLSMNSEVHLHPRNTPVQDEDPRVVASSTLDNVILQQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFVEALEHQLLKDRKRSVRKRPSQRDNYSPTVPTPIPNQSRTSGQDTCTVKLVLVDSQNIQKLGPAKGSLKRNVNIGINRSNNKADSATLKPRQRRKPADSISSAAYKKWEKAAIAGVSLVADAAEHLERTSTDKEVERQQEHTALETADKVLPPLPTISPTLFAEGNVQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGCVPSFHNINVENKKEQIVDSVPGRVPSTSDQSENFVDPYKKLTSVKENDTFATSSSSMPKETSSYISASKRDIADTSDPAANVSWPRKETGNEIITGQVEDMGDERLSSGTALSAGEWADSLTNISVGDLLAEVPHDLDAAPVAESSQCLQQIPFSCDSFDAAIAAHISRHQNKMGALSTLASHASSIWDAEETCDAFSFQKNPVLCNEVSRLPDIAPPAADCEQIARTNSELLDAEGPTDYPAHEDPMDDCLRNPHTLDNSVNDFNGLTDIYWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKKEPTPTVEAGETASFSDFKIGSQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query788 2.2.26 [Sep-21-2011]
Q8LJT8743 TSL-kinase interacting pr yes no 0.878 0.931 0.525 0.0
Q96RY5 1269 Protein cramped-like OS=H yes no 0.079 0.049 0.333 5e-07
Q6PG95 1285 Protein cramped-like OS=M yes no 0.079 0.049 0.333 6e-07
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2 Back     alignment and function desciption
 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/761 (52%), Positives = 500/761 (65%), Gaps = 69/761 (9%)

Query: 23  QDEDPRVVASSTLDNVILQQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRS 82
           Q+ +P +++S+++   I Q  AK+PTRQWAAWT +EEESFFTALRQVGKNFEKIT RV+S
Sbjct: 29  QNSNPNLLSSASIS--ITQFPAKKPTRQWAAWTHQEEESFFTALRQVGKNFEKITSRVQS 86

Query: 83  KNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKP 142
           KNKDQVRHYYYRLVRRMNKLLGP L LDAKN KDTNAAMLRWWSLLEKYSCKASKLHLKP
Sbjct: 87  KNKDQVRHYYYRLVRRMNKLLGPDLSLDAKNPKDTNAAMLRWWSLLEKYSCKASKLHLKP 146

Query: 143 RRFKIFVEALEHQLLKDRKRSVRKRPSQRDNYSPTVPTPIPNQSRTSGQDTCTVKLVLVD 202
           RRFK+F+EALEHQLLKDR++S+RKR  Q +N S      I + SR  G D    KL+L D
Sbjct: 147 RRFKLFIEALEHQLLKDRRKSIRKRTCQGENLSSASLGNISSHSRERGLDNRPFKLILSD 206

Query: 203 SQNIQKLGPAKGSLKRNVNIGINRSNNKADSATLK-PRQRRKPADSISSAAYKKWEKAAI 261
            QN++KLGP + S K   ++ +N  + K D+A  +  RQRRK         Y+KWEKAAI
Sbjct: 207 GQNVKKLGPGRASTKHGESLSVNLGDEKEDTAFGRGGRQRRK-------QGYRKWEKAAI 259

Query: 262 AGVSLVADAAEHLERTSTDKEVERQQEHTALETADKVLP-PLPTISPTLFAEGNVQTPVK 320
            GVSLVADAAEHLERTS DK+++ Q +           P  L +      ++ N+Q   K
Sbjct: 260 DGVSLVADAAEHLERTSIDKDMDDQTDLGPTRYLTGKSPLSLCSAGDVPLSDANMQFSAK 319

Query: 321 LKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFP 380
           LKLQL+PID+ TR++LEMD HNPHLELTLS RKKISSVLEHLNRKWG++S A+GEL+LFP
Sbjct: 320 LKLQLFPIDECTRRSLEMDKHNPHLELTLSNRKKISSVLEHLNRKWGSSSCATGELLLFP 379

Query: 381 YGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGC 440
           Y A++E +  +QRWT DS  SAA+V++M+GSP +FRLRYGWF     G +    P++  C
Sbjct: 380 YNARKETVTCHQRWTHDSFLSAAEVHSMVGSPSVFRLRYGWFVHDASGSIISQVPTSDPC 439

Query: 441 VPSFHNINVENKKE---QIVDSVPGRVPSTSDQSENFVDPYKKLTSVKENDTFATSSSSM 497
                ++NV+   E    + +S P  V ST++Q+          TSV+ +     +S   
Sbjct: 440 PSLEDDMNVDRLNEVNMLLTESGPLSVHSTAEQT----------TSVEPSQGLVCASGVH 489

Query: 498 PKETSSYISASKRDIADTSDPAANVSWPRKETGNEIITGQVEDMGDERLSSGTALSAGEW 557
            +   S          D  +PA+    P                  E LS G A S GEW
Sbjct: 490 DRPARSR---------DDYEPASTSITPL-----------------EHLSGGNAQSPGEW 523

Query: 558 ADSLTNISVGDLLAEVPHDLDA----APVAESSQ-CLQQIPFSCDSFDAAIAAHISRHQN 612
           ADSLTNIS+GDLL+EVP D+D+     P  E S   L+ +PF+ DSFDAAIAAHI RHQN
Sbjct: 524 ADSLTNISIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFDAAIAAHILRHQN 583

Query: 613 KMGALSTLASHASSIWDAEETCDAFSFQKNPVLCNEVSRLPDIAPPAADCEQIARTN--- 669
           K  A   L S +SS+WD EET DAFSFQKN       + L  +A P      + R N   
Sbjct: 584 KPSAQLPLTSGSSSLWDDEETRDAFSFQKNRFA--NSTELASVASPKG----VGRVNGEP 637

Query: 670 SELLDAEGPTD--YPAHE--DPMDDCLRNPHTLDNSVNDFNGLTDIYWPDSLGPLDLDIP 725
           S+L++A    +  Y  H+  DPM++   +PHT+D+      GL D+YWPDSLGPLDLDI 
Sbjct: 638 SQLVEASSGDEGSYNPHDDGDPMEEGPADPHTMDSPGKTPCGLADVYWPDSLGPLDLDIR 697

Query: 726 SSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKKE 766
           SSKY  +D+ILS+SLGGL+RLIA+SLDAFQNCS FG D K+
Sbjct: 698 SSKYT-DDLILSESLGGLSRLIATSLDAFQNCSLFGFDNKK 737

Arabidopsis thaliana (taxid: 3702)
>sp|Q96RY5|CRML_HUMAN Protein cramped-like OS=Homo sapiens GN=CRAMP1L PE=1 SV=3 Back     alignment and function description
>sp|Q6PG95|CRML_MOUSE Protein cramped-like OS=Mus musculus GN=Cramp1l PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query788
297741635803 unnamed protein product [Vitis vinifera] 0.992 0.973 0.644 0.0
224069531781 predicted protein [Populus trichocarpa] 0.969 0.978 0.649 0.0
359481545729 PREDICTED: TSL-kinase interacting protei 0.889 0.961 0.639 0.0
224140201753 predicted protein [Populus trichocarpa] 0.934 0.977 0.628 0.0
356502116782 PREDICTED: TSL-kinase interacting protei 0.963 0.970 0.612 0.0
356559298798 PREDICTED: TSL-kinase interacting protei 0.982 0.969 0.613 0.0
255556944748 DNA binding protein, putative [Ricinus c 0.920 0.969 0.606 0.0
449440403791 PREDICTED: TSL-kinase interacting protei 0.940 0.936 0.576 0.0
449518284799 PREDICTED: TSL-kinase interacting protei 0.939 0.926 0.569 0.0
297823505740 tsl-kinase interacting protein 1 [Arabid 0.874 0.931 0.536 0.0
>gi|297741635|emb|CBI32767.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1017 bits (2629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/805 (64%), Positives = 616/805 (76%), Gaps = 23/805 (2%)

Query: 1   MQMESQLSMNSEVHLHPRNTPVQDEDPRVVASSTLDNVILQQSAKRPTRQWAAWTREEEE 60
           MQ E+Q+S++ +   HP N  ++D DP  + SS   N +  +  KR TRQWAAWTR+EEE
Sbjct: 1   MQTEAQVSLDCQAVPHPENNVIKDGDPGALPSSP--NHVAPKPVKRQTRQWAAWTRQEEE 58

Query: 61  SFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAA 120
           SFFTALRQVGKNFEKIT RV+SKNKDQVRHYYYRLVRRMNKLLGPG  LDAKNSKDTNAA
Sbjct: 59  SFFTALRQVGKNFEKITCRVQSKNKDQVRHYYYRLVRRMNKLLGPGFSLDAKNSKDTNAA 118

Query: 121 MLRWWSLLEKYSCKASKLHLKPRRFKIFVEALEHQLLKDRKRSVRKRPSQRDNYSPTVPT 180
           MLRWWSLLEKYSCKASKLHLKPRRFKIF+EALEHQLLKDRK+++RKRPSQ  N S T P 
Sbjct: 119 MLRWWSLLEKYSCKASKLHLKPRRFKIFIEALEHQLLKDRKKNIRKRPSQGGNCSSTAPN 178

Query: 181 PIPNQSRTSGQDTCTVKLVLVDSQNIQKLGPAKG-SLKRNVNIGINRSNNKADSATLK-P 238
            + +QSR SG +T  VKLVLV+SQN+QKLGP KG SLKRNVN+G+NRSN+K DS+ +K  
Sbjct: 179 TVSSQSRASGNETRAVKLVLVESQNVQKLGPGKGSSLKRNVNVGVNRSNSKGDSSAMKTA 238

Query: 239 RQRRKPADSISSAAYKKWEKAAIAGVSLVADAAEHLERTSTDKEVERQQE---HTALETA 295
           RQR+KPA ++SSAAYK+WEKAAIAGVSLVADAAEHLERT+ DKEVE  Q        +  
Sbjct: 239 RQRQKPA-AVSSAAYKRWEKAAIAGVSLVADAAEHLERTTNDKEVEHDQSAPGQRGFDAV 297

Query: 296 DKVLPPLPTISPTLFAEGNVQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKI 355
            +VLPP+PT S  +F + NVQT  KLKLQL+PID+GTR+ALEMD HNPHLELTLSTRKKI
Sbjct: 298 GEVLPPVPTFSQNMFVKSNVQTSTKLKLQLFPIDEGTRRALEMDKHNPHLELTLSTRKKI 357

Query: 356 SSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMF 415
           SSVLEHL RKWGN+ +ASGELMLFPY  QR NL G+ RWTQDS  +AADVY +IGSPP+F
Sbjct: 358 SSVLEHLTRKWGNSGIASGELMLFPYSVQRGNLAGHPRWTQDSSVTAADVYEIIGSPPVF 417

Query: 416 RLRYGWFSDTELGYVAPHAPSASGCVPSFHNINVENKKEQIVDSVPGRVPSTSD-QSENF 474
           RLRYGWFS+TE+  VA  AP AS  +   HN+ V N+K+QI+DS P   P  +D QSE  
Sbjct: 418 RLRYGWFSNTEISSVAFQAPLASCTILGEHNMEVNNRKKQIMDSRPIHAPPPTDHQSEKL 477

Query: 475 VDPYKKLTSVKENDTFATSSSSMPKETSSYIS-ASKRDIADTSDPAANVSWPRKETGNEI 533
           V+  K  +++   +T   SS++  +E + Y++ AS  ++ ++S+ AAN+SW ++E+ ++ 
Sbjct: 478 VERCKDRSTLLTGNTVVPSSNNAQEEMTRYVNVASNSNLMESSEAAANISWHQRESEDDS 537

Query: 534 ITGQVEDMGDERLSSGTALSAGEWADSLTNISVGDLLAEVPHDLDAA----PVAESSQCL 589
           I   +E++ D R+SS TALS GEWADSLTNISVGDLLA+V  ++D +    PV+ SSQ  
Sbjct: 538 IMMPLEEVDDLRISSSTALSTGEWADSLTNISVGDLLADVSQEMDTSCVNPPVSGSSQYP 597

Query: 590 QQIPFSCDSFDAAIAAHISRHQNKMGALSTLASHASSIWDAEETCDAFSFQKNPVLCNEV 649
           QQIPFSCDSFDAAIAAHIS+HQ+K    S L SHA SIWDAEETCD FSFQKNPV   EV
Sbjct: 598 QQIPFSCDSFDAAIAAHISKHQDKTSFQSALVSHAPSIWDAEETCDGFSFQKNPVFHQEV 657

Query: 650 SRLPDIAPPAADCEQIARTNS--------ELLDAEGPTDYPAHEDPMDDCLRNPHTLDNS 701
                IA P A  EQIAR NS        EL + E   D PAH D MDD   +PH LD++
Sbjct: 658 LSSSKIASPGAS-EQIARINSVGSGCLIEELPNVERLLDDPAHGDLMDDSPSDPHMLDST 716

Query: 702 VNDFNGLTDIYWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFG 761
             D +GL DIYWPDSLGPLDLDIPSS+Y  ED+ILS+SL GL  LIA+S+DAFQNCSFFG
Sbjct: 717 AKDLSGLADIYWPDSLGPLDLDIPSSRYHNEDLILSESLSGLKSLIANSVDAFQNCSFFG 776

Query: 762 LDKKEPTPTVEAGETASFSDFKIGS 786
           LDKKEP  TVEA ET SF+DFKIGS
Sbjct: 777 LDKKEPASTVEARETVSFADFKIGS 801

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224069531|ref|XP_002326366.1| predicted protein [Populus trichocarpa] gi|222833559|gb|EEE72036.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359481545|ref|XP_002276884.2| PREDICTED: TSL-kinase interacting protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140201|ref|XP_002323473.1| predicted protein [Populus trichocarpa] gi|222868103|gb|EEF05234.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356502116|ref|XP_003519867.1| PREDICTED: TSL-kinase interacting protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356559298|ref|XP_003547937.1| PREDICTED: TSL-kinase interacting protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255556944|ref|XP_002519505.1| DNA binding protein, putative [Ricinus communis] gi|223541368|gb|EEF42919.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449440403|ref|XP_004137974.1| PREDICTED: TSL-kinase interacting protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449518284|ref|XP_004166172.1| PREDICTED: TSL-kinase interacting protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297823505|ref|XP_002879635.1| tsl-kinase interacting protein 1 [Arabidopsis lyrata subsp. lyrata] gi|297325474|gb|EFH55894.1| tsl-kinase interacting protein 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query788
ZFIN|ZDB-GENE-030131-8255 1125 cramp1l "Crm, cramped-like (Dr 0.074 0.052 0.394 2.9e-11
RGD|1311948 1286 Cramp1l "Crm, cramped-like (Dr 0.079 0.048 0.333 2.1e-09
UNIPROTKB|E1BN92 1274 CRAMP1L "Uncharacterized prote 0.079 0.049 0.346 7.9e-09
UNIPROTKB|J3KR07 1266 CRAMP1L "Protein cramped-like" 0.079 0.049 0.333 1.2e-08
UNIPROTKB|Q96RY5 1269 CRAMP1L "Protein cramped-like" 0.079 0.049 0.333 1.2e-08
UNIPROTKB|F1P887 1217 CRAMP1L "Uncharacterized prote 0.079 0.051 0.333 1.3e-08
MGI|MGI:1930190 1285 Cramp1l "Crm, cramped-like (Dr 0.079 0.049 0.333 2.9e-06
ZFIN|ZDB-GENE-030131-8255 cramp1l "Crm, cramped-like (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 128 (50.1 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
 Identities = 28/71 (39%), Positives = 41/71 (57%)

Query:    43 SAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSK------------NKDQVRH 90
             S KR  RQW +W+ E++ SFF  L + GK+FE I + +  K            NK+QVRH
Sbjct:   150 SQKRVRRQWESWSTEDKNSFFEGLYEHGKDFEAIQNNIALKYKKKGKPASMVKNKEQVRH 209

Query:    91 YYYRLVRRMNK 101
             +YYR   +++K
Sbjct:   210 FYYRTWHKISK 220
GO:0003682 "chromatin binding" evidence=IEA
RGD|1311948 Cramp1l "Crm, cramped-like (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BN92 CRAMP1L "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J3KR07 CRAMP1L "Protein cramped-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96RY5 CRAMP1L "Protein cramped-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P887 CRAMP1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1930190 Cramp1l "Crm, cramped-like (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LJT8TKI1_ARATHNo assigned EC number0.52560.87810.9313yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query788
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 8e-07
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-06
cd1166146 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma 8e-05
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 4e-04
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information 
 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 53 AWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLVRR 98
           WT EE+E     +++ G  N+EKI   +  +  +Q R  +  L++ 
Sbjct: 3  EWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 788
KOG4468782 consensus Polycomb-group transcriptional regulator 100.0
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 98.31
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.12
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 97.99
KOG4167907 consensus Predicted DNA-binding protein, contains 97.32
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 96.96
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 95.85
KOG1194534 consensus Predicted DNA-binding protein, contains 95.71
KOG3554693 consensus Histone deacetylase complex, MTA1 compon 94.38
PLN03212249 Transcription repressor MYB5; Provisional 93.51
KOG4329445 consensus DNA-binding protein [General function pr 93.34
PLN03091459 hypothetical protein; Provisional 93.27
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 91.95
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 90.41
PLN03212249 Transcription repressor MYB5; Provisional 88.52
PLN03091459 hypothetical protein; Provisional 86.93
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-90  Score=753.29  Aligned_cols=654  Identities=45%  Similarity=0.674  Sum_probs=525.6

Q ss_pred             cccCCCccc---cc--ccCHHHHHHHHHHHHHhcccHHHHHHHhh----------hcchhhHHHHHHHHHHHHHhhc-CC
Q 003898           42 QSAKRPTRQ---WA--AWTREEEESFFTALRQVGKNFEKITHRVR----------SKNKDQVRHYYYRLVRRMNKLL-GP  105 (788)
Q Consensus        42 ~~~kk~~R~---w~--~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~----------~KnKdQVRhFYYrt~~rI~k~L-~~  105 (788)
                      +++|++.++   |.  +||++|+++||+||++||||||+|-+++.          .|+|+||||||||+.|||+||+ ++
T Consensus        74 ~~~k~~qk~Lkt~~ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~F~~  153 (782)
T KOG4468|consen   74 FPAKKPQKQLKTWAKTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLLFGP  153 (782)
T ss_pred             cccccchhhcccccccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Confidence            467888888   77  99999999999999999999999966653          8899999999999999999999 55


Q ss_pred             CcccCCCChh-hHHHHHHHHHH-HHHHhcccchhhccc---c-hhhHHHHHHHHHHHhhhhccccccCCCC--CCCCCCC
Q 003898          106 GLCLDAKNSK-DTNAAMLRWWS-LLEKYSCKASKLHLK---P-RRFKIFVEALEHQLLKDRKRSVRKRPSQ--RDNYSPT  177 (788)
Q Consensus       106 ~~~iD~Kn~k-ev~~Am~~w~s-l~~K~gc~~sKL~~k---p-~r~k~f~~~L~~~llK~RkK~~~kr~~~--~~n~l~a  177 (788)
                      ++..|+++.+ ..++|+++||. |+|||.|...+|++|   | |||+.||+..+++.++.||+..+||.++  +.+....
T Consensus       154 ~l~~dAkel~tliNa~e~rrk~fl~ek~~~Klk~Lv~~Gqi~VR~~~k~I~iktp~c~alrR~~~~k~~~~lP~~~~~~~  233 (782)
T KOG4468|consen  154 DLSLDAKELKTLINAAELRRKSFLLEKYSCKLKKLVLKGQIPVRRFKKFIEIKTPQCLALRRKSIRKRTCQLPGENLSSA  233 (782)
T ss_pred             ccCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcceeeeeeccceeEecCCccHHHHHHHhhhhhccCCccceeee
Confidence            7888888888 88899999999 679999999999999   7 9999999999999999999999888877  6677888


Q ss_pred             CCCCCCCcccCCCCCccce-EEEeccchhhhhcCCCCCCCCcccccccccCCC-cCCCccccc-ccccCCCCccchhHHH
Q 003898          178 VPTPIPNQSRTSGQDTCTV-KLVLVDSQNIQKLGPAKGSLKRNVNIGINRSNN-KADSATLKP-RQRRKPADSISSAAYK  254 (788)
Q Consensus       178 ~~~~ls~~sr~~g~~~~~v-kl~~~~~~n~~k~g~~kgs~~~~~~~~v~~~~~-k~Ds~a~~~-~qr~k~~~~~~~~ayk  254 (788)
                      +++.++.++|..|-+..+. +|++.+.+|++|++.+.-+..+..+.++..+.. +.|++..++ ++|++.+      .|.
T Consensus       234 ~p~n~~~h~r~r~l~qnPfgr~il~~~~~v~kl~~~~~~kw~~a~~S~p~~~~L~pd~a~~~~s~c~q~~A------~~r  307 (782)
T KOG4468|consen  234 SPGNISSHSRERGLDQNPFGRLILSDGQNVKKLGPGRASKWHGASLSVPLGDELKPDTAFGRGSRCRQKQA------GYR  307 (782)
T ss_pred             cccccchhhhhhhhccCcceeEEecCchhHHHhccchhhhcccccccCccccccCcccccccccceecccc------ccC
Confidence            8899999999998888887 999999999999999988877777888888866 889999999 8888875      699


Q ss_pred             HHHHH----HHhccchHH--HHHhhhhcccchhHHHHhhhhhhccccccCCCCCCCCCCC--ccccCCCCCCceEEEEEe
Q 003898          255 KWEKA----AIAGVSLVA--DAAEHLERTSTDKEVERQQEHTALETADKVLPPLPTISPT--LFAEGNVQTPVKLKLQLY  326 (788)
Q Consensus       255 k~~ka----a~~gvs~va--daae~ler~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~KikLQLF  326 (788)
                      +|+++    +|.||..|+  |+|||||++.+++.++.+....+.. +.++..|+..+..-  ..-.++.|-+.+|++|||
T Consensus       308 p~~s~Sisi~i~~vee~~fK~~ae~le~tgi~va~d~~~~tkP~~-~~t~p~p~sL~d~~~~~~~~~~~n~s~~l~~elf  386 (782)
T KOG4468|consen  308 PWESASISIAIDGVEEVAFKDAAEHLERTGIDVAMDDQTDTKPTR-YLTGPSPLSLCDAGDVPLSDANMNFSAKLKLELF  386 (782)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhccceeecccccccCCcc-cccCCCCcccccccccccchhhhhhHHHHHhHhh
Confidence            99999    999999999  9999999999999998887765554 33333344333321  111255577899999999


Q ss_pred             cCcHHHHH-HHhhcCCCceeEEeecCccchhHHHHHHhhhhccCccCCcceEeeccccccccccCCcCccccCCccHHHH
Q 003898          327 PIDDGTRK-ALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADV  405 (788)
Q Consensus       327 Pide~Tr~-~le~~g~nP~LELTLs~rKkiSsvl~HLn~KWg~S~~a~Gel~LfPy~~~~~nLa~~~~Wt~~~~~ta~DV  405 (788)
                      ||+.-++- .|+++.||||++|+++-+|||+ |++|||+|||.++||.|++.||||.+..+.....              
T Consensus       387 ~i~g~~~ptsl~~~~hn~h~p~q~s~p~ki~-~~n~lnr~~g~ssCaa~~~~l~~~~t~~~~vp~~--------------  451 (782)
T KOG4468|consen  387 PIDGCTRPTSLEMDKHNPHLPLQLSNPKKIS-VLNHLNRKWGSSSCAAGELLLFPYNTRKETVPCH--------------  451 (782)
T ss_pred             hhccCCCcceeeeeccCCCCchhhcCcchhh-HHHHHhhccccccccccccccCcccccccccchh--------------
Confidence            99999998 9999999999999999999999 9999999999999999999999999865432221              


Q ss_pred             HHHhCCCCEEEEeecccccCcccccCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCC---Cccccccccccc
Q 003898          406 YAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGCVPSFHNINVENKKEQIVDSVPGRVPSTSDQ---SENFVDPYKKLT  482 (788)
Q Consensus       406 ~~avGsP~vFRLRYgWf~~~e~~~~~~~~Pss~~~l~~~~n~n~e~~~~~~~d~~p~~~~~t~d~---~~~~~e~~k~~t  482 (788)
                                 -||+||...+- +...|+|...+|+...-  |+..     .+.+.+..+..+++   +-++-+.++|. 
T Consensus       452 -----------~rsk~~~~~~s-s~asq~~~~kp~l~DD~--~~d~-----~~~~~~~~~~~~p~sd~~~~e~~ds~~~-  511 (782)
T KOG4468|consen  452 -----------QRSKWFVHDAS-SIASQVPTSKPCLEDDM--NVDR-----LNEVNMLLTESGPLSDHSTAEQTDSVEP-  511 (782)
T ss_pred             -----------hhccceecchh-hhhhcCCCCCcccccch--hhhc-----ccchhhhhccCCcccceeeeecccchhh-
Confidence                       28999998754 77789999999964333  3322     33333333333332   11111111111 


Q ss_pred             ccccCCcccccCCCCCcccccccccccccccCCCCCCCCcCCCccccCcccccccccccCcccccccccCCccccc-ccc
Q 003898          483 SVKENDTFATSSSSMPKETSSYISASKRDIADTSDPAANVSWPRKETGNEIITGQVEDMGDERLSSGTALSAGEWA-DSL  561 (788)
Q Consensus       483 ~~~~n~~~~~~S~~~~~~~s~~v~~~~~~~~~~~~pt~~~sw~~~~~~~~~~~~~l~~~~~~~~S~~~~lS~~eWa-DsL  561 (788)
                          -+.+-|.+ ++..++++.+.     +   +.|...           +|+.| +     -++.+++++.|||. +++
T Consensus       512 ----l~~l~c~~-~~~tapA~s~~-----t---~~P~st-----------sVtpq-~-----~~~~~na~~pGessSas~  561 (782)
T KOG4468|consen  512 ----LQGLVCAS-GVHTAPARSRD-----T---YEPAST-----------SVTPQ-E-----HLSGGNAQSPGESSSASL  561 (782)
T ss_pred             ----hcceeeec-ccccccccccC-----C---cCcccc-----------ccchh-h-----ccCCcCCCCCCccccccc
Confidence                11111222 24444444322     2   223221           23343 2     36778999999999 999


Q ss_pred             cccchhhhccCCCCCCC----CCCcc--ccccccccccCccccHHHHHHHHHhccCCCCCCCCCcccCCCCCCCcccccc
Q 003898          562 TNISVGDLLAEVPHDLD----AAPVA--ESSQCLQQIPFSCDSFDAAIAAHISRHQNKMGALSTLASHASSIWDAEETCD  635 (788)
Q Consensus       562 TNISiG~LLSEAs~~~d----~~~~~--qsn~~lQqip~ssDSFDAaIAa~isr~Q~~~~~~~p~~s~~sSIwDAEETCh  635 (788)
                      +||++|+||+|++.+.|    .++..  +...-|...+|++|+|||++||||-+||.+.+...|.++...|+|+.|+|-|
T Consensus       562 ~~~~~~~~l~~~P~d~ds~~r~ts~~sk~khlLL~~~h~~~~k~d~~t~A~~l~~~t~t~g~~~~~sg~fs~~p~~r~~D  641 (782)
T KOG4468|consen  562 TNISIGDLLSEVPDDIDSDGRDTSATSKGKHLLLRDVHFTSDKFDAATAAHILRHQTKTSGQLPLTSGSFSLWPDERTRD  641 (782)
T ss_pred             cchhhhhhcccCCccccccCcccccccccceeEEecccccchhHHHHHHhhhccccccCCCcCCccceeecccccccccc
Confidence            99999999999998877    33322  2334457899999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccccccCCCCCCCCcchhhhhc-ccc---cccCCCCCCCCCCCCCCCcccCCCCCcCCCCcCCCCCCCCc
Q 003898          636 AFSFQKNPVLCNEVSRLPDIAPPAADCEQIAR-TNS---ELLDAEGPTDYPAHEDPMDDCLRNPHTLDNSVNDFNGLTDI  711 (788)
Q Consensus       636 AF~fqk~~~~~~~~~~~s~~~sp~s~~~~~~~-~~~---~~~~~~~~~d~~~~~~~~ee~~~~~~~~~n~~~~~~gL~dI  711 (788)
                      +|.||++..+...++.  .+.+|+-.++ +.+ ..+   .++++++...++..+.+|++...+++.....++...||+|+
T Consensus       642 p~~~~l~R~~ns~~L~--s~r~p~pt~~-~d~s~~Ql~~g~~gD~~S~s~~~pgs~m~~~~As~~~~pg~~~t~~~l~D~  718 (782)
T KOG4468|consen  642 PFSFQLNRFANSTELA--SVRSPKPTGR-VDGSPSQLVEGSSGDEGSYSPHDPGSPMEEGPASPHTMPGPGKTPCGLADV  718 (782)
T ss_pred             hhHHHHHHhhhhhhhh--hccCCCCCCC-CCcCHHHHhccCCCcccccCCCCCCCcccCCCCCcccCCCCCCCcchhhhh
Confidence            9999998876654444  4444554444 432 111   35777788899899999999888887777666888999999


Q ss_pred             cCCCCCCCCCCCCCCccccccccccccccchhhHHHhhhhhhccccceecccCCCCCCcc
Q 003898          712 YWPDSLGPLDLDIPSSKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKKEPTPTV  771 (788)
Q Consensus       712 ~WpDSlGPlDLgi~sSry~~edli~~DSL~gl~rlia~SLDAFqn~Sff~~dk~~~~~~~  771 (788)
                      ||++++||+||++.+.+| .+|+|+..|++|+.+||++|+|+||+||+|+||+|+.++.+
T Consensus       719 ~~q~~tn~~Dl~~~sn~a-~~d~~~~es~~~~h~li~Ss~D~~~d~sL~hfd~kk~t~~~  777 (782)
T KOG4468|consen  719 YWQDSTNPLDLDIRSNKA-TDDLILSESLGGLHRLIASSLDAFQDCSLFHFDNKKDTSNM  777 (782)
T ss_pred             hhhccCCCcccccccchh-hhhhhhhhhhhhHHHHHhhhhhhhhccceeccccccccccC
Confidence            999999999999999998 77899999999999999999999999999999999998764

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG4329 consensus DNA-binding protein [General function prediction only] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query788
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 3e-14
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 4e-10
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 1e-09
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 4e-08
2crg_A70 Metastasis associated protein MTA3; transcription 2e-06
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 3e-06
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 1e-05
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 2e-05
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 3e-04
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 8e-04
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
 Score = 67.7 bits (165), Expect = 3e-14
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 41  QQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
             S+ R    +  WT EE  +    L + G+N+  I   V SK   Q +++Y+   +R N
Sbjct: 6   HHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query788
2crg_A70 Metastasis associated protein MTA3; transcription 98.74
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.65
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.64
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.39
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 98.11
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.05
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.0
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 97.73
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.72
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 96.61
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.41
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.31
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.28
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.25
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.17
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.06
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 96.99
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 96.92
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.89
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.89
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 96.82
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.81
2cjj_A93 Radialis; plant development, DNA-binding protein, 96.8
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 96.76
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.75
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 96.72
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.63
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 96.61
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.59
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.29
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 95.97
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 95.85
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 95.78
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 95.64
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 95.64
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 95.46
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 95.22
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 95.06
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 94.42
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 94.32
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 94.06
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 93.85
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 93.59
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 91.52
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 89.63
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 89.56
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 87.88
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 87.42
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 86.2
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 80.87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
Probab=98.74  E-value=5.5e-09  Score=88.08  Aligned_cols=56  Identities=23%  Similarity=0.463  Sum_probs=50.6

Q ss_pred             cccccccCHHHHHHHHHHHHHhcccHHHHHH-HhhhcchhhHHHHHHHHHHHHHhhcC
Q 003898           48 TRQWAAWTREEEESFFTALRQVGKNFEKITH-RVRSKNKDQVRHYYYRLVRRMNKLLG  104 (788)
Q Consensus        48 ~R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~-~i~~KnKdQVRhFYYrt~~rI~k~L~  104 (788)
                      +.....||.+|...|-+||..|||||-.|+. +|.+|+..||.+||| .|+|...+..
T Consensus         5 r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY-~wKkt~~y~q   61 (70)
T 2crg_A            5 SSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY-MWKTTDRYVQ   61 (70)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH-HHHTCCSSCS
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH-hhcCCchHHH
Confidence            4567899999999999999999999999999 799999999999999 7998776543
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 788
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-09
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 3e-08
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 3e-08
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 8e-06
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 2e-04
d1ofcx152 a.4.1.3 (X:799-850) SANT domain of the nucleosome 0.002
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 46  RPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
           +  +    W+ +E+E+F     Q  KNF  I   +  K   +   YYY   +  N
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNEN 66
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query788
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.86
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.79
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.76
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.55
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.9
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.6
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.5
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.22
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.93
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 96.72
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.16
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 94.85
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 94.47
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 94.08
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 93.97
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 92.58
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 91.38
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 80.61
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.9e-10  Score=92.47  Aligned_cols=52  Identities=25%  Similarity=0.398  Sum_probs=47.6

Q ss_pred             cCCCcccccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHH
Q 003898           44 AKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRL   95 (788)
Q Consensus        44 ~kk~~R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt   95 (788)
                      ..++++....||.+|...|++++.+||+||.+|+.+|..|+..||++|||+.
T Consensus        10 ~~~~~~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          10 VYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTSTTTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHccccCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3456667788999999999999999999999999999999999999999974
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure