Citrus Sinensis ID: 003901

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------79
MELLQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTKNLVIRASKSAELETAVIKKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSPDENA
cccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccCEccccEEEEEccccccEEEEEEEEccccccccCEEEEEccccccccccEEEEEEcccccccEEEEEECccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccCECccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHcccccccccEEEEccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHcccccccccccccccccEEEECcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccEEECccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEccccccccEEEEEEccccccccccccccccHHHHHHcccccccccCEEECccEEEEEEEcccccc
*******SSPL***************************TFRCCNH*****HFANSKAFENVTKNLVIRA********************VSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSP****
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MELLQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTKNLVIRASKSAELETAVIKKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSPDENA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Isoamylase 1, chloroplastic Involved in the trimming of pre-amylopectin chains. Accelerates the crystallization of nascent amylopectin molecules during starch synthesis. ISA1 and ISA2 work exclusively together as a multimeric holoenzyme. ISA1-ISA2 removes preferentially branches that are very close to other branches.confidentO04196
Glycogen debranching enzyme Hydrolyzes the alpha-1,6-glucosidic linkages in glycogen which has first been partially depolymerized by phosphorylase. Shows only very little activity with native glycogen.probableQ6CZK1

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.2.-.-Glycosylases.probable
3.2.1.-Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.probable
3.2.1.68Isoamylase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1BF2, chain A
Confidence level:very confident
Coverage over the Query: 93-783
View the alignment between query and template
View the model in PyMOL
Template: 4AIO, chain A
Confidence level:very confident
Coverage over the Query: 70-435,450-559,588-749,761-784
View the alignment between query and template
View the model in PyMOL