Citrus Sinensis ID: 003915

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------
MTGLLRKTETASFVATARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCLLKF
cccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccccEEEEEEHHHHcccccccccccccccccccccccHHHHHHHHHccccccHHHcHHHHHHHHHHHHccccccccccccccccccccEEEEccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEccHHHHHHHHHccccccccccEEEEEcccEEEEEEEEEccEEEEEEccccEEEEEEcccccccccccccccEEEEEEccEEEEEEcEEEEccEEEEEEEEEccccccccccEEEEEEcHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHcccccccccccccccEEEEEEccccccccccccccccccccEEEcccccccccccccccEEEEEEEEc
ccccccccccccHHHHHHHccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEccccccccccccHHEEcccccccccEEEcccccccccccccEccccHHEEEcccccccHHcccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHcEEEEEEcccHHccccccHHHHHHHHccccHHcEEEcccccccHHcccccccccccEEEEccccccccccccccccccEEEEEHHHEHHEcccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEEEEccccccccHHHHHHHHccccEcHHHHHHHHHHHHHHHHHcccccccccEEEEHHHHHHHHHccccccccccccccccccEEEEEEEEEcccEEEEEcccccEEEEEccccEEEccccccccEEEEEcccEEEEEEEEEEcccEEEEEEEEEEccEEEEcccEEEEEEcHHHHHHHHHcccHHHHHHHHHHHHHcccHccccccccccHcEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHcccHEEEcccccccEEEEEccccHHHHHcccccccHcccEEEEccccEHHHHHcccccccEEEEEEc
mtgllrktetaSFVATARVLLNPSLTLAVTNHHHSLISRFSAsavaampgadpqvvewpatkvrDTFFKFfedknhvnwksspvvpvndptllfanagmnqykpiflgtadpntqlsklTRACNTqkciraggkhndlddvgkdtYHHTFFEMlgnwsfgdyfkNEAIEWAWELLTKVYrlpadrlyatyfggdekaglapdneARDIWLKflpasrvlpfgckdnfwemgdtgpcgpcseihydrtgnrdaaslvnnddptciEIWNIVFIQfnresdgslkplpakhvdtglgFERLTSILQNkmsnydtdvfMPIFDAIQqatgarpysgkvgaddadkvDMAYRVVADHIRTLSFAiadgscpgnegrEYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGkvlsgqdafilwdtygfpldLTQLMAEERGLLVDIEGFNNAMDEARERSRSAqnkqaggaivMDADATAALHkrgvlatddsfkfiwFQDHKSVIKAIYTGsefiesvvpgnEVGIVLASSSfyaeqggqifdegFIEGLFGSFYVRNVQIYGGFVIHIgsltegagrfsvgeEVICKvdydrrkliapnhtCTHMLNFALREVlgdhvdqkgsvvlpeklrfdfshgkpvdpehLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLravfgevypdpvrVVAIGRKVedlladpenkeWLSISAELCGGQYVAIMCSHSWSLALNCLLKF
mtgllrktetasfvATARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDknhvnwksspvvpvNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCiraggkhndlddVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSfaiadgscpgneGREYVLRRILRRAVRYGSEvlkaqdgffnGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVlpeklrfdfshgkpvdpehLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCLLKF
MTGLLRKTETASFVATARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQreahireiiaaeeaSFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCLLKF
**********ASFVATARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES***L*PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFN********************AIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCLL**
**************ATARVLLNPSLT************************************VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNN**********************MDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCLLKF
********ETASFVATARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDE**************GAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCLLKF
*******************LLNPSLTLAVTN*************************EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCLLKF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTGLLRKTETASFVATARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDxxxxxxxxxxxxxxxxxxxxxQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVxxxxxxxxxxxxxxxxxxxxxCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCLLKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query787 2.2.26 [Sep-21-2011]
P36428 1003 Alanine--tRNA ligase OS=A yes no 0.921 0.722 0.822 0.0
Q5A8K2 969 Alanine--tRNA ligase OS=C N/A no 0.926 0.752 0.561 0.0
P40825 983 Alanine--tRNA ligase, mit yes no 0.939 0.751 0.559 0.0
Q54Y20 946 Alanine--tRNA ligase, cyt yes no 0.898 0.747 0.568 0.0
O13914 959 Alanine--tRNA ligase OS=S yes no 0.907 0.744 0.559 0.0
P50475 968 Alanine--tRNA ligase, cyt yes no 0.893 0.726 0.548 0.0
Q8BGQ7 968 Alanine--tRNA ligase, cyt yes no 0.893 0.726 0.550 0.0
Q8CFX8 968 Alanine--tRNA ligase, cyt N/A no 0.893 0.726 0.548 0.0
Q5RC02 968 Alanine--tRNA ligase, cyt yes no 0.893 0.726 0.545 0.0
P49588 968 Alanine--tRNA ligase, cyt yes no 0.893 0.726 0.545 0.0
>sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3 Back     alignment and function desciption
 Score = 1280 bits (3311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/725 (82%), Positives = 652/725 (89%)

Query: 45  VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP 104
           VA MPG++P   +WPA +VRDT+  FF  K H  W SSPVVP NDPTLLFANAGMNQYKP
Sbjct: 46  VAVMPGSEPSETQWPAKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKP 105

Query: 105 IFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 164
           IFLGTADPNT+LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK
Sbjct: 106 IFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 165

Query: 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCK 224
            EAIEWAWELLTKVY LP DR+YATYFGGDEKAGL PDNEARDIWLK LP+ RVLPFGCK
Sbjct: 166 KEAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPDNEARDIWLKVLPSGRVLPFGCK 225

Query: 225 DNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284
           DNFWEMGDTGPCGPC+EIHYDR GNRDAASLVNNDDPTC+EIWN+VFIQFNRESDGSLKP
Sbjct: 226 DNFWEMGDTGPCGPCTEIHYDRIGNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKP 285

Query: 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVD 344
           LPAKHVDTG+GFERLTS+LQNKMSNYDTDVFMPIFD IQ+ATGARPYSGKVG +D D+VD
Sbjct: 286 LPAKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVD 345

Query: 345 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404
           MAYRVVADHIRTLSFAIADGS PGNEGREYVLRRILRRAVRYG E+LKA++GFFNGLV+ 
Sbjct: 346 MAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSS 405

Query: 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI 464
           V++VMGDVF ELK+ E  I +II  EEASF KTL KGIEKF+KA Q VQG  LSG DAFI
Sbjct: 406 VIRVMGDVFTELKEHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAVQGNTLSGDDAFI 465

Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
           LWDTYGFPLDLTQLMAEERGLLVD++GFN AM+EARERSRSAQNKQAGGAIVMDADAT+ 
Sbjct: 466 LWDTYGFPLDLTQLMAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMDADATST 525

Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
           LHK GV ATDDSFK+IWFQDH+S +KAIYTGS F+ES    + VG+VL S+SFYAEQGGQ
Sbjct: 526 LHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAEQGGQ 585

Query: 585 IFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPN 644
           IFD G IEG FG+F V NVQI+GGFV+HIG L++  G  SVG++VICKVDY+RRKLIAPN
Sbjct: 586 IFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKLIAPN 645

Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
           HTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLRFDFSHGKPVDPE LRRIESIVN+QIK E
Sbjct: 646 HTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQIKDE 705

Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 764
           LDVFSKEA L+EAK I GLRAVFGEVYPDPVRVV+IGRKVEDLLADPEN EW  +S+E C
Sbjct: 706 LDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLSSEFC 765

Query: 765 GGQYV 769
           GG ++
Sbjct: 766 GGTHI 770
Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 Back     alignment and function description
>sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3 Back     alignment and function description
>sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=alaS PE=2 SV=1 Back     alignment and function description
>sp|O13914|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ala1 PE=1 SV=1 Back     alignment and function description
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 Back     alignment and function description
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 Back     alignment and function description
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 Back     alignment and function description
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 Back     alignment and function description
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query787
255580622 1025 alanyl-tRNA synthetase, putative [Ricinu 0.922 0.708 0.869 0.0
225423779 1002 PREDICTED: alanyl-tRNA synthetase-like [ 0.935 0.734 0.857 0.0
449461691 956 PREDICTED: alanine--tRNA ligase-like [Cu 0.918 0.756 0.849 0.0
449508396 956 PREDICTED: LOW QUALITY PROTEIN: alanine- 0.918 0.756 0.846 0.0
297737260 960 unnamed protein product [Vitis vinifera] 0.918 0.753 0.848 0.0
224083946 973 predicted protein [Populus trichocarpa] 0.926 0.749 0.841 0.0
30694735 1003 Alanyl-tRNA synthetase [Arabidopsis thal 0.921 0.722 0.822 0.0
334183197 963 Alanyl-tRNA synthetase [Arabidopsis thal 0.917 0.749 0.822 0.0
5734779 955 cytosolic tRNA-Ala synthetase [Arabidops 0.917 0.756 0.822 0.0
297852712 955 cytosolic tRNA-Ala synthetase [Arabidops 0.917 0.756 0.821 0.0
>gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1352 bits (3499), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/726 (86%), Positives = 675/726 (92%)

Query: 45  VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP 104
           +AAMPG DPQ +EWPA KVRDTF  FFEDK HV+WKSSPVVPVNDPTLLFANAGMNQ+KP
Sbjct: 68  IAAMPGVDPQEMEWPAKKVRDTFISFFEDKKHVHWKSSPVVPVNDPTLLFANAGMNQFKP 127

Query: 105 IFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 164
           IFLGTADPNT LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK
Sbjct: 128 IFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 187

Query: 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCK 224
            EAI WAWELLTK+Y+LPADR+YATYFGGDEKAGLAPD EARD WL+FLP  RVLPFGCK
Sbjct: 188 REAIGWAWELLTKIYKLPADRIYATYFGGDEKAGLAPDAEARDFWLQFLPPERVLPFGCK 247

Query: 225 DNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284
           DNFWEMGDTGPCGPC+EIHYDR GNRDA+ LVNNDDPTCIEIWN+VFIQFNRESDGSLKP
Sbjct: 248 DNFWEMGDTGPCGPCTEIHYDRVGNRDASQLVNNDDPTCIEIWNLVFIQFNRESDGSLKP 307

Query: 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVD 344
           LPAKHVDTG+GFERLTS+LQNKMSNYDTDVF+PIFDAIQQATGARPYSGKVG+DD D+VD
Sbjct: 308 LPAKHVDTGMGFERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDVDRVD 367

Query: 345 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404
           MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ+GFFNGLVNI
Sbjct: 368 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNI 427

Query: 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI 464
           VVKVMGDVFPEL Q E  IREII  EEASFGKTLLKGIEKFKKAAQ+VQGKV   QDAF+
Sbjct: 428 VVKVMGDVFPELIQNEVRIREIIKEEEASFGKTLLKGIEKFKKAAQEVQGKVSCLQDAFV 487

Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
           LWDTYGFPLDLTQLMAEERGL VD+EGFNNAMDEARERSR+AQNKQAGG I+MDADAT+A
Sbjct: 488 LWDTYGFPLDLTQLMAEERGLWVDVEGFNNAMDEARERSRNAQNKQAGGDIIMDADATSA 547

Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
           LHK+GV  TDDS+KFIWFQDH+SVIKAIYTG+EF+ S    NEVGIVL S+SFYAEQGGQ
Sbjct: 548 LHKKGVSVTDDSYKFIWFQDHESVIKAIYTGTEFLGSTTSSNEVGIVLESTSFYAEQGGQ 607

Query: 585 IFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPN 644
           IFD G +EG FGSF V NVQI+GGFV+HIGSLT  A R SVG++VICKVDYDRR LIAPN
Sbjct: 608 IFDTGSLEGTFGSFQVSNVQIFGGFVVHIGSLTRAAPRLSVGDKVICKVDYDRRTLIAPN 667

Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
           HTCTHMLNFALREVLG+HVDQKGS+VLPEKLRFDFSHGKPVDP  LR+IESIVNEQIKAE
Sbjct: 668 HTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPALLRKIESIVNEQIKAE 727

Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 764
           L+V +KEATL+EAK INGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEW SISAELC
Sbjct: 728 LEVSAKEATLSEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWSSISAELC 787

Query: 765 GGQYVA 770
           GG +++
Sbjct: 788 GGTHIS 793

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225423779|ref|XP_002277341.1| PREDICTED: alanyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461691|ref|XP_004148575.1| PREDICTED: alanine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449508396|ref|XP_004163302.1| PREDICTED: LOW QUALITY PROTEIN: alanine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224083946|ref|XP_002307181.1| predicted protein [Populus trichocarpa] gi|222856630|gb|EEE94177.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30694735|ref|NP_175439.2| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|21542451|sp|P36428.3|SYA_ARATH RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; Flags: Precursor gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334183197|ref|NP_001185186.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|332194404|gb|AEE32525.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana] gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query787
TAIR|locus:2011962 1003 ALATS "Alanyl-tRNA synthetase" 0.956 0.750 0.790 0.0
CGD|CAL0001447 969 ALA1 [Candida albicans (taxid: 0.926 0.752 0.555 6.2e-220
UNIPROTKB|Q5A8K2 969 ALA1 "Alanine--tRNA ligase" [C 0.926 0.752 0.555 6.2e-220
SGD|S000005862 983 ALA1 "Cytoplasmic and mitochon 0.939 0.751 0.551 1.2e-218
DICTYBASE|DDB_G0277823 946 alaS "alanine-tRNA ligase" [Di 0.898 0.747 0.563 1.5e-216
POMBASE|SPAC23C11.09 959 ala1 "mitochondrial and cytopl 0.907 0.744 0.554 4.4e-210
UNIPROTKB|F1P5J5 916 AARS "Uncharacterized protein" 0.893 0.767 0.545 1.2e-207
UNIPROTKB|F1S431 954 AARS "Uncharacterized protein" 0.907 0.748 0.534 1.6e-205
RGD|1304832 968 Aars "alanyl-tRNA synthetase" 0.907 0.737 0.535 5.4e-205
UNIPROTKB|A6QLT9 968 AARS "AARS protein" [Bos tauru 0.905 0.736 0.533 8.8e-205
TAIR|locus:2011962 ALATS "Alanyl-tRNA synthetase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3195 (1129.8 bits), Expect = 0., P = 0.
 Identities = 595/753 (79%), Positives = 656/753 (87%)

Query:    17 ARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNH 76
             +RV  +  L     +H     S  ++S+VA MPG++P   +WPA +VRDT+  FF  K H
Sbjct:    18 SRVFYSSHLRRPFFSHFRFSSSSSTSSSVAVMPGSEPSETQWPAKRVRDTYVDFFRGKGH 77

Query:    77 VNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136
               W SSPVVP NDPTLLFANAGMNQYKPIFLGTADPNT+LSKL+RACNTQKCIRAGGKHN
Sbjct:    78 KFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRACNTQKCIRAGGKHN 137

Query:   137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEK 196
             DLDDVGKDTYHHTFFEMLGNWSFGDYFK EAIEWAWELLTKVY LP DR+YATYFGGDEK
Sbjct:   138 DLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDEK 197

Query:   197 AGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLV 256
             AGL PDNEARDIWLK LP+ RVLPFGCKDNFWEMGDTGPCGPC+EIHYDR GNRDAASLV
Sbjct:   198 AGLQPDNEARDIWLKVLPSGRVLPFGCKDNFWEMGDTGPCGPCTEIHYDRIGNRDAASLV 257

Query:   257 NNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFM 316
             NNDDPTC+EIWN+VFIQFNRESDGSLKPLPAKHVDTG+GFERLTS+LQNKMSNYDTDVFM
Sbjct:   258 NNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMSNYDTDVFM 317

Query:   317 PIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376
             PIFD IQ+ATGARPYSGKVG +D D+VDMAYRVVADHIRTLSFAIADGS PGNEGREYVL
Sbjct:   318 PIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVL 377

Query:   377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGK 436
             RRILRRAVRYG E+LKA++GFFNGLV+ V++VMGDVF ELK+              SF K
Sbjct:   378 RRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEHEKKITDIIKEEEASFCK 437

Query:   437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAM 496
             TL KGIEKF+KA Q VQG  LSG DAFILWDTYGFPLDLTQLMAEERGLLVD++GFN AM
Sbjct:   438 TLAKGIEKFRKAGQAVQGNTLSGDDAFILWDTYGFPLDLTQLMAEERGLLVDVDGFNKAM 497

Query:   497 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGS 556
             +EARERSRSAQNKQAGGAIVMDADAT+ LHK GV ATDDSFK+IWFQDH+S +KAIYTGS
Sbjct:   498 EEARERSRSAQNKQAGGAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGS 557

Query:   557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSL 616
              F+ES    + VG+VL S+SFYAEQGGQIFD G IEG FG+F V NVQI+GGFV+HIG L
Sbjct:   558 TFLESSAASDNVGLVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYL 617

Query:   617 TEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLR 676
             ++  G  SVG++VICKVDY+RRKLIAPNHTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLR
Sbjct:   618 SKETGEVSVGDKVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLR 677

Query:   677 FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVR 736
             FDFSHGKPVDPE LRRIESIVN+QIK ELDVFSKEA L+EAK I GLRAVFGEVYPDPVR
Sbjct:   678 FDFSHGKPVDPEDLRRIESIVNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVR 737

Query:   737 VVAIGRKVEDLLADPENKEWLSISAELCGGQYV 769
             VV+IGRKVEDLLADPEN EW  +S+E CGG ++
Sbjct:   738 VVSIGRKVEDLLADPENNEWSLLSSEFCGGTHI 770
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004813 "alanine-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA
GO:0043039 "tRNA aminoacylation" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0051604 "protein maturation" evidence=RCA
CGD|CAL0001447 ALA1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A8K2 ALA1 "Alanine--tRNA ligase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000005862 ALA1 "Cytoplasmic and mitochondrial alanyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277823 alaS "alanine-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC23C11.09 ala1 "mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S431 AARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLT9 AARS "AARS protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P36428SYA_ARATH6, ., 1, ., 1, ., 70.82200.92120.7228yesno
O13914SYA_SCHPO6, ., 1, ., 1, ., 70.55950.90720.7445yesno
O01541SYAC_CAEEL6, ., 1, ., 1, ., 70.53900.89580.7283yesno
Q8BGQ7SYAC_MOUSE6, ., 1, ., 1, ., 70.55000.89320.7262yesno
Q9VLM8SYAC_DROME6, ., 1, ., 1, ., 70.51630.89070.7256yesno
Q54Y20SYAC_DICDI6, ., 1, ., 1, ., 70.56860.89830.7473yesno
P40825SYA_YEAST6, ., 1, ., 1, ., 70.55920.93900.7517yesno
P50475SYAC_RAT6, ., 1, ., 1, ., 70.54860.89320.7262yesno
Q5RC02SYAC_PONAB6, ., 1, ., 1, ., 70.54590.89320.7262yesno
Q5AQL1SYA_EMENI6, ., 1, ., 1, ., 70.54550.89960.7367yesno
P49588SYAC_HUMAN6, ., 1, ., 1, ., 70.54590.89320.7262yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.70.991
3rd Layer6.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query787
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 0.0
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 0.0
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 0.0
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 0.0
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 0.0
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 1e-132
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 1e-121
PRK13902 900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 5e-75
TIGR03683 902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 2e-72
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 1e-26
COG2872241 COG2872, COG2872, Predicted metal-dependent hydrol 8e-22
PLN02961223 PLN02961, PLN02961, alanine-tRNA ligase 5e-11
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information 
 Score = 1374 bits (3558), Expect = 0.0
 Identities = 515/727 (70%), Positives = 579/727 (79%), Gaps = 23/727 (3%)

Query: 48  MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL 107
           MP  D    EWP  ++R TF  FFE K H    SSP+VPV+DPTLLF NAGMNQ+KPIFL
Sbjct: 1   MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFL 60

Query: 108 GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEA 167
           GTADPNT L KL RA NTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK EA
Sbjct: 61  GTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEA 120

Query: 168 IEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNF 227
           I WAWELLTKVY LPADRLYATYFGGDEK   APD+EAR IWL +LP  RVLPFGCKDNF
Sbjct: 121 IGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDYLPEERVLPFGCKDNF 178

Query: 228 WEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
           WEMGDTGPCGPCSEIHYDR G RDAA LVNNDDP  IEIWN+VFIQFNRE+DGSLKPLPA
Sbjct: 179 WEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238

Query: 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAY 347
           KHVDTG+G ERL SILQNK SNYDTD+FMPIFDAIQ+ATGARPY+GKVGA+D D+VDMAY
Sbjct: 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAY 298

Query: 348 RVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK 407
           RVVADHIRTLSFAIADG  P NEGR YVLRR+LRRAVRYG  +L A++GFF  LV +VV+
Sbjct: 299 RVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVE 358

Query: 408 VMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFI 464
           + GDVFPE+K+ E  I EIIA EE SFGKTL KGIEKFKKA    +   G VLSG+DAF+
Sbjct: 359 LSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFL 418

Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
           L+DTYGFP+DLT+LMAEERG+ VD+EGF  AM+EARERSR+A  K  GGAI + A+AT+ 
Sbjct: 419 LYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478

Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
           L K+GV ATDD  K+ W  DH++V+KAI TG  F+ESV  G+EVGIVL  +SFYAE GGQ
Sbjct: 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQ 538

Query: 585 IFDEGFIEGLFG-SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAP 643
           I D G +EG  G    V +VQ  GGFV+HIG++TE  G  SVG+ V CKVDYDRR+ IAP
Sbjct: 539 IGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAP 596

Query: 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKA 703
           NHT TH+LN AL+EVLGDHVDQKGS+V  EKLRFDFSHGKP+ PE LR +ES+VNE I  
Sbjct: 597 NHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGD 656

Query: 704 ELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEL 763
            L V +KE  LA+AK INGLRAVFGE YPDPVRVV++G                  S EL
Sbjct: 657 ALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV---------------YSMEL 701

Query: 764 CGGQYVA 770
           CGG +V+
Sbjct: 702 CGGTHVS 708

Length = 936
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 787
KOG0188 895 consensus Alanyl-tRNA synthetase [Translation, rib 100.0
PLN02900 936 alanyl-tRNA synthetase 100.0
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 100.0
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 100.0
PRK01584594 alanyl-tRNA synthetase; Provisional 100.0
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 100.0
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 100.0
PF01411552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 100.0
cd00673232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 100.0
PLN02961223 alanine-tRNA ligase 100.0
COG2872241 Predicted metal-dependent hydrolases related to al 100.0
KOG2105 415 consensus Predicted metal-dependent hydrolase, con 99.95
PLN02837 614 threonine-tRNA ligase 99.71
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 99.68
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 99.64
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 99.55
PRK12444 639 threonyl-tRNA synthetase; Reviewed 99.54
PLN02908 686 threonyl-tRNA synthetase 99.31
COG0441 589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.0
PF0797344 tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco 98.94
smart0086344 tRNA_SAD Threonyl and Alanyl tRNA synthetase secon 98.71
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 96.02
PRK09348283 glyQ glycyl-tRNA synthetase subunit alpha; Validat 95.61
TIGR00388293 glyQ glycyl-tRNA synthetase, tetrameric type, alph 94.32
PRK14908 1000 glycyl-tRNA synthetase; Provisional 94.13
cd00733279 GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( 93.17
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 91.66
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 91.54
COG0752298 GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl 90.94
PF02091284 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit 89.89
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 88.34
KOG1637 560 consensus Threonyl-tRNA synthetase [Translation, r 85.54
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 85.03
PF01411552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 83.44
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 82.91
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 82.46
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 81.21
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-229  Score=1894.64  Aligned_cols=689  Identities=61%  Similarity=1.008  Sum_probs=654.2

Q ss_pred             CChHHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 003915           58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND  137 (787)
Q Consensus        58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fkp~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnD  137 (787)
                      ||++|||++||+||++|.|++|+||||||.+||||||+|||||||||+|||+      +++++|++|+|||||+||||||
T Consensus         2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHND   75 (895)
T KOG0188|consen    2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHND   75 (895)
T ss_pred             ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCC
Confidence            8999999999999999999999999999999999999999999999999998      3458999999999999999999


Q ss_pred             CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CCCC
Q 003915          138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPAS  216 (787)
Q Consensus       138 ld~VG~t~rHhTfFEMLGnfSFgdYfK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~~l~~D~E~~~iW~~~-~~~~  216 (787)
                      ||+||+|.+||||||||||||||||||+|||.|||||||++||||+||||||||+||+++|||+|.||++||+++ +|++
T Consensus        76 LdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~s  155 (895)
T KOG0188|consen   76 LDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDS  155 (895)
T ss_pred             hhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCchH
Q 003915          217 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF  296 (787)
Q Consensus       217 rI~~~~~~dNfW~mG~~GpCGPCsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~~~IDTGmGl  296 (787)
                      ||++++.+|||||||+||||||||||||||+||++++.+||.|+|.++||||||||||||++||+|.|||+|||||||||
T Consensus       156 rILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGf  235 (895)
T KOG0188|consen  156 RILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGF  235 (895)
T ss_pred             hccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCCCccCCCCCchHH
Q 003915          297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL  376 (787)
Q Consensus       297 ERl~~vlqg~~snydtD~F~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~Psn~grgYvl  376 (787)
                      |||++|||+|.||||||+|+||+++|++.++++ |+|    ++.+.+|+||||+|||+||+++|||||.+|+|+||||||
T Consensus       236 ERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvL  310 (895)
T KOG0188|consen  236 ERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVL  310 (895)
T ss_pred             HHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHH
Confidence            999999999999999999999999999999997 997    456789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Q 003915          377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQG-K  455 (787)
Q Consensus       377 RrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~-~  455 (787)
                      |||||||+||++.+||++++||..|||+|++.||++||||+++.+.|.++|.+||+.|++||++|.++|++.++.+++ +
T Consensus       311 RRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~  390 (895)
T KOG0188|consen  311 RRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSK  390 (895)
T ss_pred             HHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998864 6


Q ss_pred             CCChHHHHHhhhcCCCChhhHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCccc
Q 003915          456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD  535 (787)
Q Consensus       456 ~isg~~af~LydTyGfP~dlt~~ia~e~gl~vD~~~F~~~m~~~r~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~  535 (787)
                      +|||++||.||||||||+|||++||+|+|++||+++|+++.++.+++|+++.+...+  +.++.  +.+|    +|+|+|
T Consensus       391 tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdD  462 (895)
T KOG0188|consen  391 TIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDD  462 (895)
T ss_pred             cCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCC
Confidence            999999999999999999999999999999999999999999999999876543322  33333  4433    799999


Q ss_pred             CCCcccceeecEEEEEEEeCCeeeeeecCCCeEEEEEccceeeeCCCCccCcceEEEecCc---eEEEEeEEEECCEEEE
Q 003915          536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIH  612 (787)
Q Consensus       536 ~~~Y~y~~~~~akVlai~~~~~~v~~~~~~~~~~VvLD~T~FYpegGGQ~~D~G~I~~~~~---~~~V~dv~k~~g~ivH  612 (787)
                      ++||+-...++++|++++.++.+++++..|++..||||+|+||+|+|||.+|+|.|...+.   .|.|..++. +|+|+|
T Consensus       463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh  541 (895)
T KOG0188|consen  463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVH  541 (895)
T ss_pred             ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEE
Confidence            9999535679999999999999999999999999999999999999999999999986543   455555565 899999


Q ss_pred             EEEeecCCCcCCCCCEEEEEEehhchhhhcccccHHHHHHHHHHHHhCCcceeeeecccCCceEEEeeCCCCCCHHHHHH
Q 003915          613 IGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRR  692 (787)
Q Consensus       613 ~~~~~~~~~~l~~G~~V~~~VD~erR~~~~r~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~RfDFs~~~~lt~eeL~~  692 (787)
                      .+.. .  +.+.+||+|.+.+|++||..+|+|||||||||+|||+++ ..+.|+||+|+||++||||++..++|.||+++
T Consensus       542 ~g~l-~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~  617 (895)
T KOG0188|consen  542 IGVL-E--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKK  617 (895)
T ss_pred             Eeee-c--cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHH
Confidence            9986 3  799999999999999999999999999999999999999 45789999999999999999998999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEcCHHHHhcccCchhhcCCCCCCCEEEEEEccccccccCCcCCcccCCceeeccCCcccccc
Q 003915          693 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIM  772 (787)
Q Consensus       693 IE~~vNe~I~~n~pV~~~~~~~~EA~~~~gl~~~fgE~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~s~elCGGTHV~nT  772 (787)
                      +|+.+|++|.++.+|.++++++++|++++|+++.|+|.||++||||++|.             +..+++|+|||||+.||
T Consensus       618 vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~-------------~~~~svE~CgGTH~~~t  684 (895)
T KOG0188|consen  618 VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGA-------------GQLTSVEFCGGTHLTNT  684 (895)
T ss_pred             HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEecc-------------ccccceeecCCcccccc
Confidence            99999999999999999999999999999999999999999999999984             34689999999999999


Q ss_pred             ccCCcEEEeee
Q 003915          773 CSHSWSLALNC  783 (787)
Q Consensus       773 ~eIg~ikil~~  783 (787)
                      ++||.|.|++-
T Consensus       685 ~~i~~fvI~se  695 (895)
T KOG0188|consen  685 SHIGDFVIVSE  695 (895)
T ss_pred             cccceEEEech
Confidence            99999999874

>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer Back     alignment and domain information
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit Back     alignment and domain information
>PRK14908 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query787
1yfr_A465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 1e-110
3htz_A464 Crystal Structure Of The Catalytic Fragment Of Alan 1e-110
3hxu_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 1e-108
3hxz_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 1e-108
1riq_A465 The Crystal Structure Of The Catalytic Fragment Of 6e-99
2zzf_A752 Crystal Structure Of Alanyl-Trna Synthetase Without 1e-38
2zze_A752 Crystal Structure Of Alanyl-Trna Synthetase Without 5e-30
2ztg_A739 Crystal Structure Of Archaeoglobus Fulgidus Alanyl- 5e-24
2e1b_A216 Crystal Structure Of The Alax-M Trans-Editing Enzym 4e-07
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure 
Iteration: 1

 Score =  394 bits (1013), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/451 (44%), Positives = 284/451 (62%), Gaps = 33/451 (7%)
Query: 60  ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
           A ++R+ F  FFE K H   KS+P+VP NDPTLLF NAGM  +K +FLG      +    
Sbjct: 5   AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGL-----EKRPY 59
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
            RA + QKC+R  GKHNDL+ VG  + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V 
Sbjct: 60  KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVL 119
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
           +LP ++LY + +  DE        EA  IW +   +P+ R+   G +DNFW+MGD GPCG
Sbjct: 120 KLPKEKLYVSVYKDDE--------EAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCG 171
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
           P SEI+ DR    +        D   +EIWN+VF+Q+NR+ +G L PLP  ++DTG+G E
Sbjct: 172 PSSEIYVDRGEEYEG-------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 224
Query: 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTL 357
           R+ S+LQ K SN++ D+  P+    ++ +G + Y  K       + D+A RV+ADH+R +
Sbjct: 225 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKF------ETDVALRVIADHLRAI 277
Query: 358 SFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELK 417
           +FAI+DG  P NEGR YV+RRILRRA+R+G + L  ++ F    V++VV +M + +PEL+
Sbjct: 278 TFAISDGVIPSNEGRGYVIRRILRRAMRFGYK-LGIENPFLYKGVDLVVDIMKEPYPELE 336
Query: 418 QXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDV--QG-KVLSGQDAFILWDTYGFPLD 474
                           F KTL  G+E  ++  Q    +G K LSG++ F  +DTYGFP+D
Sbjct: 337 LSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVD 396
Query: 475 LTQLMAEERGLLVDIEGFNNAMDEARERSRS 505
           L   +A E+GL +D+EGF   ++E RER+R 
Sbjct: 397 LIDEIAREKGLGIDLEGFQCELEEQRERARK 427
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 Back     alignment and structure
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 Back     alignment and structure
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 Back     alignment and structure
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query787
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 0.0
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 0.0
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 1e-153
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 6e-55
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 1e-53
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 1e-36
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
 Score =  672 bits (1735), Expect = 0.0
 Identities = 156/742 (21%), Positives = 268/742 (36%), Gaps = 139/742 (18%)

Query: 63  VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTR 121
           +R+ +  FFE + H   +  PVV      +    A +  ++P    G A P         
Sbjct: 65  MREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPP-----PANP 119

Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLT 176
              +Q CIR     +DLD VG+   H T FEM+ + +F       Y+KNE + +  ELL 
Sbjct: 120 LTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN 175

Query: 177 KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPC 236
           ++  +  + +                                     K+  W  G  G  
Sbjct: 176 ELG-VKKEDIVY-----------------------------------KEEPWAGG--GNA 197

Query: 237 GPCSEIHYDRTG---------NRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
           GPC E                       +        ++ N +                 
Sbjct: 198 GPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGT 257

Query: 288 KHVDTGLGFERLTSILQ--NKMSNYDTDVFMPIFDAIQQATG------------------ 327
             V   +  E + +I+   N   N + +    I     +  G                  
Sbjct: 258 PTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVA 317

Query: 328 ARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYG 387
                     +           +ADH R + F + DG  P N G  Y+ R ++RR++R  
Sbjct: 318 DTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA 377

Query: 388 SEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447
            E L+        LV +  K++G  F       + ++EI+  E+  +  T+ KG    ++
Sbjct: 378 EE-LEL-GLDLYDLVEMHKKILGFEFDVPL---STVQEILELEKERYRTTVSKGTRLVER 432

Query: 448 AAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSA 506
             +    K L   D   L+D++G P++L   +A E+G  V++       + +   ++   
Sbjct: 433 LVER--KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKV 490

Query: 507 QNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGN 566
           Q K     +  +  AT               + +++ D         T  EF   V+   
Sbjct: 491 QEK--KITLQNEYPAT---------------EKLYYDD--------PTLLEFEAEVIGVE 525

Query: 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVG 626
              ++L  S+FY E GGQ  D G++    G F V +V    G V+H+        +  VG
Sbjct: 526 GDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK----GAKPEVG 581

Query: 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVD 686
            +V   +D D R     +H+ TH+L ++L++VLG+HV Q G+     K R D +H +   
Sbjct: 582 TKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPS 641

Query: 687 PEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKV 744
            E ++ IE + N +I A   +  +     EA+   G   ++  G      +RVV +G   
Sbjct: 642 EEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGF-RLYQGGVPPGRKIRVVQVG--- 697

Query: 745 EDLLADPENKEWLSISAELCGG 766
                            + CGG
Sbjct: 698 --------------DDVQACGG 705
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query787
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 100.0
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 100.0
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 100.0
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 100.0
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 100.0
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 99.93
1tke_A224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 99.9
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.84
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 99.82
3rf1_A311 Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA 95.84
1j5w_A298 Glycyl-tRNA synthetase alpha chain; structural gen 90.72
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
Probab=100.00  E-value=3.7e-197  Score=1708.76  Aligned_cols=620  Identities=27%  Similarity=0.433  Sum_probs=563.4

Q ss_pred             CCCCCChHHHHHHHHHhhhcCC---CeEecCCCCccCCCCCcceecccccccccccc-CCCCCCCccccccccccccccc
Q 003915           54 QVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCI  129 (787)
Q Consensus        54 ~~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp~~dp~llf~nAGm~~fkp~fl-G~~~p~~~~~~~~r~~~~QkCi  129 (787)
                      ..++||++|||++||+||++||   |++||||||||+||||||||||||+||||||+ |.++||     ++|+|+|||||
T Consensus        53 ~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkCi  127 (752)
T 2zze_A           53 IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPSI  127 (752)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEEE
T ss_pred             ccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCccccccce
Confidence            4467999999999999999999   99999999999999999999999999999997 999886     47999999999


Q ss_pred             ccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHH
Q 003915          130 RAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNE  204 (787)
Q Consensus       130 R~gGkhnDld~VG~t~rHhTfFEMLGnfSFg-----dYfK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~~l~~D~E  204 (787)
                      |+    |||||||+|+|||||||||||||||     ||||+|||+|||||||++||||++||+  +              
T Consensus       128 R~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~--------------  187 (752)
T 2zze_A          128 RF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F--------------  187 (752)
T ss_dssp             CC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E--------------
T ss_pred             ec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e--------------
Confidence            97    7999999999999999999999999     999999999999999999999999994  2              


Q ss_pred             HHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeecccc----------
Q 003915          205 ARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF----------  274 (787)
Q Consensus       205 ~~~iW~~~~~~~rI~~~~~~dNfW~mG~~GpCGPCsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmqy----------  274 (787)
                                         +||||+||  ||||||||||||   +              |||||||||||          
T Consensus       188 -------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~~~~~  229 (752)
T 2zze_A          188 -------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPENAPQD  229 (752)
T ss_dssp             -------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTTCCSC
T ss_pred             -------------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeecccccccccc
Confidence                               68999999  999999999997   1              99999999999          


Q ss_pred             ---ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCCc
Q 003915          275 ---NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDA  340 (787)
Q Consensus       275 ---~r~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtD~F~pli~~i~~~~~~~-----------~y~g~~~~~~~  340 (787)
                         || ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++++|++           +|+|.++.++.
T Consensus       230 ~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~  307 (752)
T 2zze_A          230 QVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDL  307 (752)
T ss_dssp             CEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSS
T ss_pred             chhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccch
Confidence               88 69999999999999999999999999999999999 9999999999999986           23454442221


Q ss_pred             ccc------------------------cchhhhhhhhhhheeeeecCCCccCCCCCchHHHHHHHHHHHHHHhhhCCCcc
Q 003915          341 DKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDG  396 (787)
Q Consensus       341 ~~~------------------------~~~~rviaDH~R~~~f~i~DGv~Psn~grgYvlRrilRRa~r~~~~~lg~~~~  396 (787)
                      +.+                        +.++||||||+||++|||+||++|||+|||||||||||||+|++ ++||++.+
T Consensus       308 ~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~-~~lg~~~~  386 (752)
T 2zze_A          308 GDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHL-RELGLEVP  386 (752)
T ss_dssp             SCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHH-HHTTCCCC
T ss_pred             hhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHH-HHhCCCcc
Confidence            111                        45889999999999999999999999999999999999999999 47999999


Q ss_pred             hhhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCChHHHHHhhhcCCCCh
Q 003915          397 FFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPL  473 (787)
Q Consensus       397 fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~---~~~isg~~af~LydTyGfP~  473 (787)
                       |++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++   ++.|||++||+||||||||+
T Consensus       387 -l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~  465 (752)
T 2zze_A          387 -LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTP  465 (752)
T ss_dssp             -HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCH
T ss_pred             -hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCH
Confidence             99999999999999999999999999999999999999999999999999998874   25799999999999999999


Q ss_pred             hhHHHHHHHcCcccChh-hHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCcccCCCcc--cceeecEEEE
Q 003915          474 DLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIK  550 (787)
Q Consensus       474 dlt~~ia~e~gl~vD~~-~F~~~m~~~r~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~~~~Y~--y~~~~~akVl  550 (787)
                      |||++||+|+|++||++ +|+++|++||+++|++......     +.   ..+  ...++|+ +.+|+  |..+++|+|+
T Consensus       466 dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~~~~~-----~~---~~~--~~~~~T~-~l~Y~~~yl~~~~a~Vl  534 (752)
T 2zze_A          466 EIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGEELV-----DF---ELL--KDLPDTR-RLYYEDPFMXEFDAXVL  534 (752)
T ss_dssp             HHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC-------CC-----CS---SSS--SSSCCCE-EHHHHCTTCCEEEEEEE
T ss_pred             HHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhcccccch-----hh---HHh--ccCCCce-eecccCCccceEEEEEE
Confidence            99999999999999999 8999999999998865211100     00   011  1345675 66777  4589999999


Q ss_pred             EEEeCCeeeeeecCCCeEEEEEccceeeeCCCCccCcceEEEecCceEEEEeEEEECCEEEEEEEeecCCCcCCCCCEEE
Q 003915          551 AIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVI  630 (787)
Q Consensus       551 ai~~~~~~v~~~~~~~~~~VvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~ivH~~~~~~~~~~l~~G~~V~  630 (787)
                      ++..             .+||||+|||||||||||+|+|+|..++..+.|.+|++.+|.++|.+.. .  +.+++|++|.
T Consensus       535 ~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V~  598 (752)
T 2zze_A          535 RVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIVH  598 (752)
T ss_dssp             EEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEEE
T ss_pred             EEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeEE
Confidence            9974             3699999999999999999999998877789999999999999999864 3  6789999999


Q ss_pred             EEEehhchhhhcccccHHHHHHHHHHHHhCCcceeeeecccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEE
Q 003915          631 CKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSK  710 (787)
Q Consensus       631 ~~VD~erR~~~~r~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~RfDFs~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~  710 (787)
                      ++|||+||+.+|++|||+|||++||+++||.|++|+|+++.++++||||++++++|++++++||+.||++|++|+||++.
T Consensus       599 ~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~  678 (752)
T 2zze_A          599 GXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWE  678 (752)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEE
T ss_pred             EEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCcccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCHHHHhcccCchhhc--CCCCCCCEEEEEEccccccccCCcCCcccCCceeeccCCccccccccCCcEEEeeee
Q 003915          711 EATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCL  784 (787)
Q Consensus       711 ~~~~~EA~~~~gl~~~f--gE~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~s~elCGGTHV~nT~eIg~ikil~~~  784 (787)
                      +++++||+++.++ ++|  +++|++.||||+||                ++|+++||||||+||++||.|||++..
T Consensus       679 ~~s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s  737 (752)
T 2zze_A          679 WLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTE  737 (752)
T ss_dssp             EEEHHHHHHHHCG-GGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEE
T ss_pred             ecCHHHHhhcchh-hhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEE
Confidence            9999999997554 555  78898999999999                689999999999999999999999985
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* Back     alignment and structure
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 787
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 6e-90
d1riqa1221 a.203.1.1 (A:237-457) Putative anticodon-binding d 9e-46
d2e1ba2129 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C 2e-16
d1v4pa_151 d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo 4e-13
d2e1ba187 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t 3e-12
d1nyra3179 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR 8e-11
d1tkea2162 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR 5e-09
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

 Score =  280 bits (718), Expect = 6e-90
 Identities = 124/253 (49%), Positives = 163/253 (64%), Gaps = 22/253 (8%)

Query: 60  ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
           A ++R+ F  FFE K H   KS+P+VP NDPTLLF NAGM  +K +FLG           
Sbjct: 4   AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY----- 58

Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
            RA + QKC+R  GKHNDL+ VG  + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V 
Sbjct: 59  KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVL 118

Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
           +LP ++LY + +  D         EA  IW +   +P+ R+   G +DNFW+MGD GPCG
Sbjct: 119 KLPKEKLYVSVYKDD--------EEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCG 170

Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
           P SEI+ DR             D   +EIWN+VF+Q+NR+ +G L PLP  ++DTG+G E
Sbjct: 171 PSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223

Query: 298 RLTSILQNKMSNY 310
           R+ S+LQ K SN+
Sbjct: 224 RIASVLQGKNSNF 236
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 Back     information, alignment and structure
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query787
d1riqa2236 Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ 100.0
d1riqa1221 Putative anticodon-binding domain of alanyl-tRNA s 100.0
d2e1ba2129 AlaX-M trans-editing enzyme, C-terminal domain {Py 99.96
d1v4pa_151 Hypothetical protein PH0574 {Archaeon Pyrococcus h 99.95
d1nyra3179 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.91
d1tkea2162 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.7
d2e1ba187 AlaX-M trans-editing enzyme, N-terminal domain {Py 99.63
d1j5wa_281 Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo 94.41
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=2.9e-111  Score=858.24  Aligned_cols=234  Identities=53%  Similarity=1.011  Sum_probs=225.2

Q ss_pred             CCChHHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCC
Q 003915           57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN  136 (787)
Q Consensus        57 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fkp~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhn  136 (787)
                      .|+++|||++||+||++|||++||||||||+||||||||||||+||||||+|.++|+     ++|++++|||||+|||||
T Consensus         1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~-----~~r~~~~QkCiR~~gk~n   75 (236)
T d1riqa2           1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHN   75 (236)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCS-----CSEEEEEEEEECEETTEE
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccC-----CCccccccccccccCccc
Confidence            389999999999999999999999999999999999999999999999999999886     579999999999999999


Q ss_pred             CCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CC
Q 003915          137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP  214 (787)
Q Consensus       137 Dld~VG~t~rHhTfFEMLGnfSFgdYfK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~~l~~D~E~~~iW~~~--~~  214 (787)
                      ||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++        |+||+++|.+.  +|
T Consensus        76 Dld~VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~--------D~e~~~~w~~~~gi~  147 (236)
T d1riqa2          76 DLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIP  147 (236)
T ss_dssp             CTTTTTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCC
T ss_pred             hhhhcCCcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCccceEEEeecC--------cHHHHHHHHhhcCcc
Confidence            999999999999999999999999999999999999999999999999999999985        89999999987  99


Q ss_pred             CCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCc
Q 003915          215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGL  294 (787)
Q Consensus       215 ~~rI~~~~~~dNfW~mG~~GpCGPCsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~~~IDTGm  294 (787)
                      ++||++++.+||||+||++||||||||||||+++.       .++++|||||||+|||||+|+++|++.|||+|+|||||
T Consensus       148 ~~rI~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~-------~~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGm  220 (236)
T d1riqa2         148 SERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGM  220 (236)
T ss_dssp             GGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTT-------SCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             cccceecCCCCCccccCCCCCCCcceeEEEccccc-------cCCCCceeeeeeeeheeeeecCCCccccCCCCcccCCc
Confidence            99999999999999999999999999999998653       23468999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhCCCCCc
Q 003915          295 GFERLTSILQNKMSNY  310 (787)
Q Consensus       295 GlERl~~vlqg~~sny  310 (787)
                      |||||||||||++|||
T Consensus       221 GLERi~~vlqg~~s~y  236 (236)
T d1riqa2         221 GLERIASVLQGKNSNF  236 (236)
T ss_dssp             EHHHHHHHHTTCSSGG
T ss_pred             cHHHHHHHHcCCCCCC
Confidence            9999999999999998
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure