Citrus Sinensis ID: 003955

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780----

MVVKMMRWRPWPPLVTKKYEVKLVVGRMEGWDLVRGEAAEESDRLTVEIRWKGPKVALSTLRRTPVKRNFTREVEVVGVGVGRQNDDVAVVVDDDDNNIRSNGVVLWDEEFQSICTFSAYKENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEFASASEQEEFKLNIPLTIAAGAAEPCPSLCVSLSLLELRAAQETTETVQRAIVPVASPPQSGEPASADKDELSAIKAGLRKVKIFTEYVSTRRAKKACREEEGSDGRCSARSEDGEYNYPFDSDSLEDFEEGESDEGKEESSVRKSFSYGSLAHANIAGGSFYSSTRINTGDEDWVYYSYRKSDVGSSNCEDLTASVSEPSLLQSSKRSILSWRKRKLSFRSPKAKGEPLLKKAYGEEGGDDIDHDRRQLSSDESLSLGRHKTDEDFSANQSSVSEFGDDNFAIGSWENKEVISRDGQMKLQSQVFFASIDQRSERAAGESACTALVAVIADWFQNNHGLMPIKSQFDSLIREGSLEWRNLCEIDTYRERFPDKHFDLETVLQAKIRPLGVVPGKSFIGFFHPDGMDEGRFDFLHGAMSFDNIWDEISHASSESSSNEPQLYIVSWNDHFFLLKVEPEAYYIIDTLGERLYEGCNQAYILRFDNNTVIHKLPKVAQSTDEKSTGDQQVVTATTESKKEEGSVKGELTAKSEEPIKSEEVEEVVCRGKEACKEYIKSFLAAIPIRELQADIKKGLIASTPLHHRLQIELHYTKFFQPLREEAPAAEVTTTTATPPQPVEVPIAVAAA

cEEEccccccccccccccEEEEEEEEEEcccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHcccEEccccccccccccEEEEEEEEEcccccccccccEEEEEEEEHHHHHcccccccEEEEEEEEEcccccccccEEEEEEEEEEEccccccHHHHHHHccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHccHHHHHHHHcHHHHHHHcccccccHHHHHHccccccEEEccccEEEEEccccccccccccccccccHHHHHHHHHHHccccccccccEEEEEEccEEEEEEEcccEEEEEcccHHHHHHccccEEEEEEccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccEEEEEEEEEcccccccccccccccccccccccccEEEEEEcccc

cEEEEccccccccccccEEEEEEEEEEcccccccccccccccccEEEEEEEcccccccHHHHHHHHHHcccHHHHccHHHcccccccHHHccccHccccccccEEEEcHHHHHEEEEcccccccccccEEEEEEEccccccccccccEEEEEEEcHHHHHHHcccccEEEEEEEEccccccccccEEEEEEEEEEEccccccccHccccEccccccccccccccccccHHHHHHHccccEEEHHHHHccHHHHcccccccccccccEEccccccccccccccccccccccccccccccccEEEEcccccHHHHcccccccccccEEccccccEEEEEcccccccccccccccccccccccccccHccHcHHHHccccccccccccccHHHHHccccccccccccHcccccccccccccccccccccccccccccccccccEEcccEEEEEEEcccccEEEcEEEEEEEccccHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHcccHHHHHHcccccccHHHHHHHccccEEEEccccEEEEEccccccccccHHHcccccHHHHHHHHHHHcccccccccEEEEEEccccEEEEEEcHcHEEEEccccHHHccccccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccccccccccccccccccHHHcc

mvvkmmrwrpwpplvtkkyEVKLVVGRMegwdlvrgeaaeesdrLTVEIRWKGPkvalstlrrtpvkrnftREVEVVGVgvgrqnddvavvvddddnnirsngvvLWDEEFQSICTFsaykenvfhpwEIAFTVFnglnqgpkgkvpvvgsaslNLAEFASaseqeefklnipltiaagaaepcpslcVSLSLLELRAAQETTETVQRaivpvasppqsgepasadkDELSAIKAGLRKVKIFTEYVSTRRAKKAcreeegsdgrcsarsedgeynypfdsdsledfeegesdegkeessvrksfsygslahaniaggsfysstrintgdedwVYYSyrksdvgssncedltasvsepsllqssKRSILSWRKRklsfrspkakgepllkkaygeeggddidhdrrqlssdeslslgrhktdedfsanqssvsefgddnfaigswenkevisrdgqmklqSQVFFASIDqrseraagESACTALVAVIADWFqnnhglmpiksqFDSLIREGSLEWRNlceidtyrerfpdkhfdLETVLQAKirplgvvpgksfigffhpdgmdegrfdflhgamsfdNIWDEIshassesssnepqlyiVSWNDHFFLLKVEPEAYYIIDTLGERLYEGCNQAYIlrfdnntvihklpkvaqstdekstgdqQVVTATTeskkeegsvkgeltakseepikseeVEEVVCRGKEACKEYIKSFLAAIPIRELQADIKKgliastplhhrLQIELHYTKFfqplreeapaaevttttatppqpveVPIAVAAA

mvvkmmrwrpwpplvtkkyevkLVVGRMegwdlvrgeaaeesdrltveirwkgpkvalstlrrtpvkrnftrevevvgvgvgrqnddvavvvddddnniRSNGVVLWDEEFQSICTFSAYKENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEFASASEQEEFKLNIPLTIAAGAAEPCPSLCVSLSLLELRAAQETTETVQraivpvasppqsgepasadKDELSAIKAGLRKVKIFteyvstrrakkacreeegsdgrcsarsedgeynypfdsdslEDFEEGESDEGKEESSVRKSFSYGSLAHAniaggsfysstriNTGDEDWVYYSYRKSDVGSSNCEDLtasvsepsllqsskrsilswrkrklsfrspkakgepllkkaygeeggddidhdrrQLSSDESLSLGRHKTDEDFSANQSSVSEFGDDNFAIGSWENKEVISRDGQMKLQSQVFFASIDQRSERAAGESACTALVAVIADWFQNNHGLMPIKSQFDSLIREGSLEWRNLCEIDTYRERFPDKHFDLETVLQAKIRPLGVVPGKSFIGFFHPDGMDEGRFDFLHGAMSFDNIWDEISHASSESSSNEPQLYIVSWNDHFFLLKVEPEAYYIIDTLGERLYEGCNQAYILRFDNNTVIHKLPkvaqstdekstgdqqvvtatteskkeegsvkgeltakseepikseeveeVVCRGKEACKEYIKSFLAAIPIRELQADIKKGLIASTPLHHRLQIELHYTKFFQPLREEAPAAEVttttatppqpveVPIAVAAA

MVVKMMRWRPWPPLVTKKYEVKLVVGRMEGWDLVRGEAAEESDRLTVEIRWKGPKVALSTLRRTPVKRNFTRevevvgvgvgRQnddvavvvddddnnIRSNGVVLWDEEFQSICTFSAYKENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLaefasaseqeefKLNIPLTIAAGAAepcpslcvslsllelRAAQETTETVQRAIVPVASPPQSGEPASADKDELSAIKAGLRKVKIFTEYVSTRRAKKACREEEGSDGRCSARSEDGEYNYPfdsdsledfeegesdegkeessVRKSFSYGSLAHANIAGGSFYSSTRINTGDEDWVYYSYRKSDVGSSNCEDLTASVSEPSLLQSSKRSILSWRKRKLSFRSPKAKGEPLLKKAYGEEGGDDIDHDRRQLSSDESLSLGRHKTDEDFSANQSSVSEFGDDNFAIGSWENKEVISRDGQMKLQSQVFFASIDQRSERAAGESACTALVAVIADWFQNNHGLMPIKSQFDSLIREGSLEWRNLCEIDTYRERFPDKHFDLETVLQAKIRPLGVVPGKSFIGFFHPDGMDEGRFDFLHGAMSFDNIWDEIshassesssNEPQLYIVSWNDHFFLLKVEPEAYYIIDTLGERLYEGCNQAYILRFDNNTVIHKLPKVAQSTDEKSTGDQQVVTATTeskkeegsvkgeLTAKSEEPIKSeeveevvCRGKEACKEYIKSFLAAIPIRELQADIKKGLIASTPLHHRLQIELHYTKFFQPLReeapaaevttttatppqpvevpIAVAAA

****MMRWRPWPPLVTKKYEVKLVVGRMEGWDLVRGEAAEESDRLTVEIRWKGPKVALSTLRRTPVKRNFTREVEVVGVGVGRQNDDVAVVVDDDDNNIRSNGVVLWDEEFQSICTFSAYKENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEFAS****EEFKLNIPLTIAAGAAEPCPSLCVSLSLLELRAAQE*******************************IKAGLRKVKIFTEYVS**********************************************************YGSLAHANIAGGSFYSSTRINTGDEDWVYYSYRK***************************************************************************************************FAIGSWENKEVI*******LQSQVFFASID******AGESACTALVAVIADWFQNNHGLMPIKSQFDSLIREGSLEWRNLCEIDTYRERFPDKHFDLETVLQAKIRPLGVVPGKSFIGFFHPDGMDEGRFDFLHGAMSFDNIWDEI************QLYIVSWNDHFFLLKVEPEAYYIIDTLGERLYEGCNQAYILRFDNNTVIHKL*************************************************EVVCRGKEACKEYIKSFLAAIPIRELQADIKKGLIASTPLHHRLQIELHYTKFFQPL*****************************

*VVKMMRWRPWPPLVTKKYEVKLVVGRMEG***************TVEIRWKGPKVALSTLRRT************VGVGVGRQNDDVAVVVDDDDNNIRSNGVVLWDEEFQSICTFSAYKENVFHPWEIAFTVFNGLNQ**KGKVPVVGSASLNLAEFASASEQEEFKLNIPLTIAAGAAEPCPSLCVSLSLLELR**************************************GLRKVKIFTEY*****************************NYPFDSDSL*******************SFSYGSLAHANIAGGSFYSSTRINTGDEDWVYYSYRK****************************************************YGEEGGDDIDHD*******************************GDDNFAIGSWENKEVISRDGQMKLQSQVFFASID**********ACTALVAVIADWFQNNHGLMPIKSQFDSLIREGSLEWRNLCEIDTYRERFPDKHFDLETVLQAKIRPLGVVPGKSFIGFFHPDGMDEGRFDFLHGAMSFDNIWDEISH******SNEPQLYIVSWNDHFFLLKVEPEAYYIIDTLGERLYEGCNQAYILRFDNNTVI********************************************************RGKEACKEYIKSFLAAIPIRELQADIKKGLIASTPLHHRLQIELHYTKFFQP**********TTTTATPPQPVEVPIAVAAA

MVVKMMRWRPWPPLVTKKYEVKLVVGRMEGWDLVRGEAAEESDRLTVEIRWKGPKVALSTLRRTPVKRNFTREVEVVGVGVGRQNDDVAVVVDDDDNNIRSNGVVLWDEEFQSICTFSAYKENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEFASASEQEEFKLNIPLTIAAGAAEPCPSLCVSLSLLELRAAQETTETVQRAIVPVAS*************ELSAIKAGLRKVKIFTEYV*********************RSEDGEYNYPFDSDSLE*******************FSYGSLAHANIAGGSFYSSTRINTGDEDWVYYSYRKSDVGSSNCEDLTASVSEPSLLQSSKRSILSWRKRKLSFRSPKAKGEPLLKKAYGEEGGDDIDHDRRQLSSDESLSLGRHKTDEDFSANQSSVSEFGDDNFAIGSWENKEVISRDGQMKLQSQVFFASID**********ACTALVAVIADWFQNNHGLMPIKSQFDSLIREGSLEWRNLCEIDTYRERFPDKHFDLETVLQAKIRPLGVVPGKSFIGFFHPDGMDEGRFDFLHGAMSFDNIWDEIS**********PQLYIVSWNDHFFLLKVEPEAYYIIDTLGERLYEGCNQAYILRFDNNTVIHKLPKV************************************************VCRGKEACKEYIKSFLAAIPIRELQADIKKGLIASTPLHHRLQIELHYTKFFQPLREEAPAAEVTTTTATPPQPVEVPIAVAAA

MVVKMMRWRPWPPLVTKKYEVKLVVGRMEGWDLVR*****ESDRLTVEIRWKGPKVALSTLRRTPVKRNFTREVEVVG*********************RSNGVVLWDEEFQSICTFSAYKENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEFASASEQEEFKLNIPLTIAAGAAEPCPSLCVSLSLLELRAA****************************DELSAIKAGLRKVKIFTEYVSTR************************YNY********************ESSVRKSFSYGSLAHANIAGGSFYSSTRINTGDEDWVYYSYRK*********************************R*LSFR******EPLLKK*YG*EGGDDIDHD*****************************EFGDDNFAIGSWENKEVISRDGQMKLQSQVFFASIDQRSERAAGESACTALVAVIADWFQNNHGLMPIKSQFDSLIREGSLEWRNLCEIDTYRERFPDKHFDLETVLQAKIRPLGVVPGKSFIGFFHPDGMDEGRFDFLHGAMSFDNIWDEISHASSESSSNEPQLYIVSWNDHFFLLKVEPEAYYIIDTLGERLYEGCNQAYILRFDNNTVIHKLP**********************************************VEEVVCRGKEACKEYIKSFLAAIPIRELQADIKKGLIASTPLHHRLQIELHYTKFFQ*******************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		784
224091465		781	predicted protein [Populus trichocarpa]	0.956	0.960	0.740	0.0
224138270		794	predicted protein [Populus trichocarpa]	0.974	0.962	0.721	0.0
225439372		751	PREDICTED: uncharacterized protein LOC10	0.945	0.986	0.738	0.0
359481061		750	PREDICTED: uncharacterized protein LOC10	0.943	0.986	0.736	0.0
255566187		773	conserved hypothetical protein [Ricinus	0.963	0.976	0.734	0.0
359481059		727	PREDICTED: uncharacterized protein LOC10	0.914	0.986	0.724	0.0
296089356		715	unnamed protein product [Vitis vinifera]	0.899	0.986	0.710	0.0
356498655		769	PREDICTED: uncharacterized protein LOC10	0.943	0.962	0.692	0.0
356534568		768	PREDICTED: uncharacterized protein LOC10	0.942	0.962	0.686	0.0
357440043		753	hypothetical protein MTR_1g056180 [Medic	0.941	0.980	0.675	0.0

>gi\|224091465\|ref\|XP_002309261.1\| predicted protein [Populus trichocarpa] gi\|222855237\|gb\|EEE92784.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1183 bits (3060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/798 (74%), Positives = 661/798 (82%), Gaps = 48/798 (6%)

Query: 5   MMRWRPWPPLVTKKYEVKLVVGRMEGWDLVR------------GEAAEESDRLTVEIRWK 52
           MMRWRPWPPLV+KKYEV+LVV RMEGWD+VR            G+  ++S++LTVEIRWK
Sbjct: 1   MMRWRPWPPLVSKKYEVRLVVRRMEGWDVVREAVAAAPGTSSGGDLKDKSEKLTVEIRWK 60

Query: 53  GPKVALSTLRRTPVKRNFTREVEVVGVGVGRQNDDVAVVVDDDDNNIRSNGVVLWDEEFQ 112
           GPK+ALS+LRRT VKRNFT+EVEV G     + ++  V+V+             WDEEF+
Sbjct: 61  GPKLALSSLRRTAVKRNFTKEVEVCGA----EGENGGVLVE-------------WDEEFE 103

Query: 113 SICTFSAYKENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEFASASEQEEFKLNI 172
           S+CT SAYKENVFHPWEI+FTVFNG NQG K KVPVVG+A++NLAEFAS +EQ+E +L +
Sbjct: 104 SLCTLSAYKENVFHPWEISFTVFNGGNQGQKNKVPVVGTATVNLAEFASTAEQKEVELRL 163

Query: 173 PLTIAAGAAEPCPSLCVSLSLLELRAAQETTETVQRAIVPVASPPQSGEPASADKDELSA 232
           PL ++AG AEP P LCVSLSLLELR A ET+E +QRAIVPV SPPQSGE  S +KDELSA
Sbjct: 164 PLVVSAGVAEPQPLLCVSLSLLELRTATETSEPLQRAIVPVPSPPQSGEAVSTEKDELSA 223

Query: 233 IKAGLRKVKIFTEYVSTRRAKKACREEEGSDGRCSARSEDGEYNYPFDSDSLEDFEEGES 292
           IKAGLRKVKIFT YVSTRRAKKACREEEGS+GRCSARSEDGE NYPFDS+SL+D EEGES
Sbjct: 224 IKAGLRKVKIFTGYVSTRRAKKACREEEGSEGRCSARSEDGEDNYPFDSESLDDLEEGES 283

Query: 293 DEGKEESSVRKSFSYGSLAHANIAGGSFYSSTRINTGDEDWVYYSYRKSDVGSSNCEDLT 352
           DE KE+S+VRKSFSYG+LA AN AGG F+SST IN  DEDWVYYS RKSDVG S+ +D T
Sbjct: 284 DEIKEDSTVRKSFSYGTLASANYAGGPFHSSTTINDEDEDWVYYSNRKSDVGCSHSDDYT 343

Query: 353 ASVSEPSLLQSSKRSILSWRKRKLSFRSPKAKGEPLLKKAYGEEGGDDIDHDRRQLSSDE 412
            SVS PSLLQSSKRSIL WRKRKLSFRSPKAKGEPLLKKAYGEEGGDDID DRRQLSSDE
Sbjct: 344 PSVSAPSLLQSSKRSILPWRKRKLSFRSPKAKGEPLLKKAYGEEGGDDIDFDRRQLSSDE 403

Query: 413 SLSLGRHKTDEDFSANQSSVSEFGDDNFAIGSWENKEVISRDGQMKLQSQVFFASIDQRS 472
           SL+LG HK DED SAN+SSVSEFGDDNFAIGSWE KEVISRDGQMKLQ++VFFASIDQRS
Sbjct: 404 SLALGWHKADEDTSANRSSVSEFGDDNFAIGSWEKKEVISRDGQMKLQTEVFFASIDQRS 463

Query: 473 ERAAGESACTALVAVIADWFQNNHGLMPIKSQFDSLIREGSLEWRNLCEIDTYRERFPDK 532
           ERAAGESACTALVAVIADWFQNN GLMPIKSQFDSLIREGSLEWRNLCE +TYRERFPDK
Sbjct: 464 ERAAGESACTALVAVIADWFQNNRGLMPIKSQFDSLIREGSLEWRNLCENETYRERFPDK 523

Query: 533 HFDLETVLQAKIRPLGVVPGKSFIGFFHPDGMDEGRFDFLHGAMSFDNIWDEISHASSES 592
           HFDLETVLQAKIR L V+P KSFIGFFHP+GMDEGRFDFL GAMSFDNIWDEIS    E 
Sbjct: 524 HFDLETVLQAKIRFLSVLPVKSFIGFFHPEGMDEGRFDFLQGAMSFDNIWDEISRTGLEC 583

Query: 593 -SSNEPQLYIVSWNDHFFLLKVEPEAYYIIDTLGERLYEGCNQAYILRFDNNTVIHKLPK 651
            S +EPQ+Y+VSWNDHFF+LKVEP+AYYIIDTLGERLYEGCNQAYIL+FD+NT+I+KL  
Sbjct: 584 PSDDEPQVYVVSWNDHFFILKVEPKAYYIIDTLGERLYEGCNQAYILKFDSNTIINKLQN 643

Query: 652 VAQSTDEKSTGDQQVVTATTES--------KKEEGSVKGELT------AKSEEPIKSEEV 697
            A+S+DEK+ GDQQ V AT E         K+EE S+ G +       +KSEEP+KSEE 
Sbjct: 644 AAESSDEKTMGDQQNVPATVEPKDQQQVNLKEEEASILGAIITNPEEPSKSEEPLKSEEE 703

Query: 698 EEVVCRGKEACKEYIKSFLAAIPIRELQADIKKGLIASTPLHHRLQIELHYTKFFQPLRE 757
            EVVC+GK++CKEYIKSFLAAIPIRELQADIKKGL+AS PLHHRLQIE HYT+  QPL E
Sbjct: 704 GEVVCQGKDSCKEYIKSFLAAIPIRELQADIKKGLMASKPLHHRLQIEFHYTQHLQPLTE 763

Query: 758 EAPAAEVTTTTATPPQPV 775
                  T     PP+ V
Sbjct: 764 ----THATEMLTAPPESV 777

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224138270\|ref\|XP_002322772.1\| predicted protein [Populus trichocarpa] gi\|222867402\|gb\|EEF04533.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225439372\|ref\|XP_002270072.1\| PREDICTED: uncharacterized protein LOC100254761 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359481061\|ref\|XP_003632563.1\| PREDICTED: uncharacterized protein LOC100254761 isoform 3 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255566187\|ref\|XP_002524081.1\| conserved hypothetical protein [Ricinus communis] gi\|223536649\|gb\|EEF38291.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|359481059\|ref\|XP_003632562.1\| PREDICTED: uncharacterized protein LOC100254761 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296089356\|emb\|CBI39128.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356498655\|ref\|XP_003518165.1\| PREDICTED: uncharacterized protein LOC100787865 [Glycine max]	Back alignment and taxonomy information

>gi\|356534568\|ref\|XP_003535825.1\| PREDICTED: uncharacterized protein LOC100796676 [Glycine max]	Back alignment and taxonomy information

>gi\|357440043\|ref\|XP_003590299.1\| hypothetical protein MTR_1g056180 [Medicago truncatula] gi\|355479347\|gb\|AES60550.1\| hypothetical protein MTR_1g056180 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		784
TAIR\|locus:2081511		702	AT3G11760 "AT3G11760" [Arabido	0.705	0.787	0.584	2.5e-215
TAIR\|locus:2175493		782	AT5G04860 [Arabidopsis thalian	0.795	0.797	0.479	2.5e-175
TAIR\|locus:2063550		278	AT2G10560 "AT2G10560" [Arabido	0.278	0.784	0.516	1.4e-57
TAIR\|locus:2040060		423	AT2G25460 "AT2G25460" [Arabido	0.173	0.321	0.514	6.7e-49

TAIR\|locus:2081511 AT3G11760 "AT3G11760" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1629 (578.5 bits), Expect = 2.5e-215, Sum P(3) = 2.5e-215
 Identities = 346/592 (58%), Positives = 417/592 (70%)

Query:    99 IRSNGVVLW-DEEFQSICTFSAYKENVFHPWEIAFTVF-NGLNQGPKGKVPVVGSASLNL 156
             +  + VV W DEEFQS+C+ ++YK+++F+PWEI F+VF NG+ QG K K PVVG+A LNL
Sbjct:    73 VGESDVVSWEDEEFQSLCSLTSYKDSLFYPWEITFSVFTNGMKQGQKNKAPVVGTAFLNL 132

Query:   157 XXXXXXXXXXXXKLNIPLTIAAGAAXXXX-XXXXXXXXXXXRAAQETTETV-QRAIVPVA 214
                          +NIPLT++A  A                R   ET+++  Q A+VP+ 
Sbjct:   133 AEYACVTDKKEFDINIPLTLSACVASETHPLLFVSLSLLELRTTPETSDSAAQTAVVPLP 192

Query:   215 ----SPPQSGEPASADKDELSAIKAGLRKVKIFTEYVSTRRAKKACREEEG--SDGRCSA 268
                 SP Q  E  S +K+++SAIKAGLRKVKIFTE+VSTR+AKKACREEEG  S    S 
Sbjct:   193 LPSPSPQQPTETHSVEKEDVSAIKAGLRKVKIFTEFVSTRKAKKACREEEGRFSSFESSE 252

Query:   269 RSEDGEYNYPXXXXXXXXXXXXXXXXXXXXXXVRKSFSYGSLAHANIAGGSFYSSTRINT 328
               +D E ++                       +RKSFSYG L++AN  G S     +++ 
Sbjct:   253 SLDDFETDFDEGKEELMS--------------MRKSFSYGPLSYANGVGTSLNCGAKVSD 298

Query:   329 GDEDWVYYSYRKSDVGS--SNCEDLTAS-VSEPSLLQSSKRSILSWRKRKLSFRSPKAKG 385
              DEDWVYYS+RKSDVG+  S+ ED  A  V E SLL   +RSIL WRKRKLSFRSPK+KG
Sbjct:   299 EDEDWVYYSHRKSDVGAGCSDAEDSAAGLVYEASLLP--RRSILPWRKRKLSFRSPKSKG 356

Query:   386 EPLLKKAYGEEGGDDIDHDRRQLSSDESLSLGRHKTDEDFSAN-QSSVSEFGDDNFAIGS 444
             EPLLKK  GEEGGDDID DRRQLSSDE+      K DED SAN ++S SEFG+D+FAIGS
Sbjct:   357 EPLLKKDNGEEGGDDIDFDRRQLSSDEAHPPFGSKIDEDSSANPRTSFSEFGEDSFAIGS 416

Query:   445 WENKEVISRDGQMKLQSQVFFASIDQRSERAAGESACTALVAVIADWFQNNHGLMPIKSQ 504
             WE KEVISRDG MKLQ+ VF ASIDQRSERAAGESACTALVAVIADWFQ N  LMPIKSQ
Sbjct:   417 WEEKEVISRDGHMKLQTSVFLASIDQRSERAAGESACTALVAVIADWFQKNGNLMPIKSQ 476

Query:   505 FDSLIREGSLEWRNLCEIDTYRERFPDKHFDLETVLQAKIRPLGVVPGKSFIGFFHPDGM 564
             FDSLIREGSLEWRNLCE +TY ++FPDKHFDL+TVLQAKIRPL V+PGKSF+GFFHPDGM
Sbjct:   477 FDSLIREGSLEWRNLCENETYMQKFPDKHFDLDTVLQAKIRPLTVIPGKSFVGFFHPDGM 536

Query:   565 -DEGRFDFLHGAMSFDNIWDEIXXXXXXXXXNE-------PQLYIVSWNDHFFLLKVEPE 616
              +EGRF+FL GAMSFD+IW EI          +       P +YIVSWNDHFF+LKVE E
Sbjct:   537 INEGRFEFLQGAMSFDSIWAEIISLEESSANGDSYDDDSPPHVYIVSWNDHFFVLKVEKE 596

Query:   617 AYYIIDTLGERLYEGCNQAYILRFDNNTVIHKLPKVAQSTDEKSTGDQQVVT 668
             AYYIIDTLGERLYEGC+QAY+L+FD+ TVIHK+    ++  E S  + ++++
Sbjct:   597 AYYIIDTLGERLYEGCDQAYVLKFDHKTVIHKILHTEEAGSE-SEPESEILS 647

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2175493 AT5G04860 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2063550 AT2G10560 "AT2G10560" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040060 AT2G25460 "AT2G25460" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		784
pfam10358		142	pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1	2e-09

>gnl\|CDD\|220715 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 proteins	Back alignment and domain information

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 21/104 (20%)

Query: 101 SNGVVLWDEEFQSICTFSAYKEN-VFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEF 159
           +NG  +W+EEF   CT    K+   F P  + F V+    +G K    V+G A ++LAE+
Sbjct: 48  NNGRAVWNEEFSIPCTLFVDKKGGKFEPKLLTFVVYKVTKKGKKK---VLGKADIDLAEY 104

Query: 160 ASASEQ--EEFKLNIPLTIAAGAAEPCP----SLCVSLSLLELR 197
           A++ E       L           + C     +L +++SLL L 
Sbjct: 105 ANSKEPTTRRLLL-----------KKCSKKNATLSITISLLPLS 137

This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		784
PF10358		143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	99.72
cd04013		146	C2_SynGAP_like C2 domain present in Ras GTPase act	95.39
cd00275		128	C2_PLC_like C2 domain present in Phosphoinositide-	94.5
cd08400		126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	94.29
cd04044		124	C2A_Tricalbin-like C2 domain first repeat present	93.0
cd08682		126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	91.6
cd04015		158	C2_plant_PLD C2 domain present in plant phospholip	90.74
cd04022		127	C2A_MCTP_PRT_plant C2 domain first repeat found in	90.16
cd04019		150	C2C_MCTP_PRT_plant C2 domain third repeat found in	89.97
cd08379		126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	89.46
cd04043		126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	89.31
PF00168		85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	89.19
cd04014		132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	88.79
cd08678		126	C2_C21orf25-like C2 domain found in the Human chro	87.33
cd04033		133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	87.08
cd04011		111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	87.07
cd08382		123	C2_Smurf-like C2 domain present in Smad ubiquitina	86.76
cd04046		126	C2_Calpain C2 domain present in Calpain proteins.	86.32
cd04036		119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	86.28
cd08401		121	C2A_RasA2_RasA3 C2 domain first repeat present in	86.06
cd08378		121	C2B_MCTP_PRT_plant C2 domain second repeat found i	85.95
cd08383		117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	85.85
cd04042		121	C2A_MCTP_PRT C2 domain first repeat found in Multi	85.48
cd00030		102	C2 C2 domain. The C2 domain was first identified i	85.33
cd08375		136	C2_Intersectin C2 domain present in Intersectin. A	84.56
cd04040		115	C2D_Tricalbin-like C2 domain fourth repeat present	84.18
cd08681		118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	83.4
cd04050		105	C2B_Synaptotagmin-like C2 domain second repeat pre	82.99
cd08391		121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	82.01
cd08388		128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	81.87
cd04018		151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	81.61
cd08685		119	C2_RGS-like C2 domain of the Regulator Of G-Protei	80.69
cd08373		127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	80.59

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []	Back alignment and domain information

Probab=99.72  E-value=1.1e-16  Score=142.80  Aligned_cols=138  Identities=30%  Similarity=0.493  Sum_probs=109.2

Q ss_pred             cceeEEEEEEEeecCCcccccccccccCeEEEEEEecCCccccccccccccccCccccceeeeccccccCCccceeecCC
Q 003955           16 TKKYEVKLVVGRMEGWDLVRGEAAEESDRLTVEIRWKGPKVALSTLRRTPVKRNFTREVEVVGVGVGRQNDDVAVVVDDD   95 (784)
Q Consensus        16 srKf~Vklvv~rleG~~~~~~~~~~~~~~~~VEikWKGPK~~L~slrR~svkrn~T~e~~~~~~~~~~~~~~~~~~~~~~   95 (784)
                      +.||++.|.+++|++++..         ...|.|+||+++...+        ...|....                    
T Consensus         4 ~~kf~~~l~i~~l~~~p~~---------~~~v~v~wkr~~~~~~--------~~~t~~~~--------------------   46 (143)
T PF10358_consen    4 AVKFQFDLTIHELENLPSS---------NGKVFVKWKRGDKSKG--------SGTTSRAN--------------------   46 (143)
T ss_pred             eeeEEEEEEEEEeECcCCC---------CCEEEEEEEECCCCcc--------ceeeeeee--------------------
Confidence            5699999999999998773         4789999998885543        11222111                    


Q ss_pred             CCCCCCCceeeecccccceeeecccc-CCceeceeEEEEEeecCCCCCCCccceEeeeeeehhhhhccccccceeeeeee
Q 003955           96 DNNIRSNGVVLWDEEFQSICTFSAYK-ENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEFASASEQEEFKLNIPL  174 (784)
Q Consensus        96 ~~~~~~~~~VeW~EEFe~vc~ls~~k-~~~F~PWevaFtVf~g~nqgpK~K~~v~GtasLNLAE~AS~ae~ke~ei~lPL  174 (784)
                          ..++.+.|+|+|+..|+|...+ .+.|+||++.|+|+.....|.|   ..+|+++|||||||+..++ .....+||
T Consensus        47 ----~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k---~~lG~~~inLaey~~~~~~-~~~~~~~l  118 (143)
T PF10358_consen   47 ----VKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKK---KVLGKVSINLAEYANEDEE-PITVRLLL  118 (143)
T ss_pred             ----ccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCcc---ceEEEEEEEHHHhhCcCCC-cEEEEEeC
Confidence                3357899999999999999965 5569999999999998855555   6999999999999999844 57777777


Q ss_pred             eccCCCCCCCCceeeEeeeeeeccccc
Q 003955          175 TIAAGAAEPCPSLCVSLSLLELRAAQE  201 (784)
Q Consensus       175 sv~~ga~e~~p~L~vslsl~Elr~~qe  201 (784)
                      .-+   ...++.|+|+|++.+|+...+
T Consensus       119 ~~~---~~~~a~L~isi~~~~~~~~~~  142 (143)
T PF10358_consen  119 KKC---KKSNATLSISISLSELREDPD  142 (143)
T ss_pred             ccC---CCCCcEEEEEEEEEECccCCC
Confidence            766   455679999999999987654

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family	Back alignment and domain information

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)	Back alignment and domain information

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)	Back alignment and domain information

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I	Back alignment and domain information

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)	Back alignment and domain information

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group	Back alignment and domain information

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking	Back alignment and domain information

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon	Back alignment and domain information

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein	Back alignment and domain information

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)	Back alignment and domain information

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin	Back alignment and domain information

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins	Back alignment and domain information

>cd04046 C2_Calpain C2 domain present in Calpain proteins	Back alignment and domain information

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)	Back alignment and domain information

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3	Back alignment and domain information

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)	Back alignment and domain information

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>cd00030 C2 C2 domain	Back alignment and domain information

>cd08375 C2_Intersectin C2 domain present in Intersectin	Back alignment and domain information

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins	Back alignment and domain information

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins	Back alignment and domain information

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11	Back alignment and domain information

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin	Back alignment and domain information

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family	Back alignment and domain information

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		784
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 45.6 bits (107), Expect = 7e-05
 Identities = 48/310 (15%), Positives = 95/310 (30%), Gaps = 97/310 (31%)

Query: 401 IDHDRRQLSSDESLSLGRHKTDEDFS-----ANQSS---VSEFGD---DNFAIGSWENKE 449
           +DH    L+ DE  SL     D            ++   +S   +   D  A   W+N +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWK 348

Query: 450 VISRDGQMKLQS--QVFFASIDQRSERAAGESACTALVAVIADWFQNNHGLMPIKSQFDS 507
            ++ D   KL +  +     ++    R   +      ++V    F              +
Sbjct: 349 HVNCD---KLTTIIESSLNVLEPAEYRKMFDR-----LSV----FPP-----------SA 385

Query: 508 LIREGSLE--WRNLCEIDT-------------------YRERFPDKHFDL------ETVL 540
            I    L   W ++ + D                         P  + +L      E  L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 541 QAKIRPLGVVPGKSFIGFFHPDGMDEGRFDFL--HGAMSFDNIWDEISHASSESSSNEPQ 598
              I     +P         P  +D+  +  +  H  +        I H   E  +    
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LK------NIEHP--ERMTLFRM 495

Query: 599 LYIVSWNDHFFLLKVEPEAY------YIIDTLGE-RLYEGCNQAYILRFDN------NTV 645
           +++   +  F   K+  ++        I++TL + + Y+     YI   D       N +
Sbjct: 496 VFL---DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP----YICDNDPKYERLVNAI 548

Query: 646 IHKLPKVAQS 655
           +  LPK+ ++
Sbjct: 549 LDFLPKIEEN 558

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		784
2dmh_A		140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	95.42
3b7y_A		153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	95.2
3pyc_A		132	E3 ubiquitin-protein ligase smurf1; phospholipid b	94.71
3m7f_B		176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	93.49
1wfj_A		136	Putative elicitor-responsive gene; C2 domain, rike	93.15
2nq3_A		173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	92.84
3kwu_A		148	MUNC13-1; calcium binding protein, phospholipid bi	92.52
1rlw_A		126	Phospholipase A2, CALB domain; hydrolase, C2 domai	90.19
2chd_A		142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	89.86
2fk9_A		157	Protein kinase C, ETA type; ATP-binding, metal-bin	89.84
2ep6_A		133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	89.76
1ugk_A		138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	86.68
2q3x_A		171	Regulating synaptic membrane exocytosis protein 1;	82.64
1v27_A		141	Regulating synaptic membrane exocytosis protein 2;	82.51
1a25_A		149	CALB, protein kinase C (beta); calcium++/phospholi	80.93
3b79_A		129	Toxin secretion ATP-binding protein; alpha-beta st	80.83
1gmi_A		136	Protein kinase C, epsilon type; PKC, C2 domain, X-	80.1

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

Probab=95.42  E-value=0.33  Score=41.75  Aligned_cols=126  Identities=12%  Similarity=0.137  Sum_probs=76.3

Q ss_pred             eeEEEEEEEeecCCcccccccccccCeEEEEEEecCCccccccccccccccCccccceeeeccccccCCccceeecCCCC
Q 003955           18 KYEVKLVVGRMEGWDLVRGEAAEESDRLTVEIRWKGPKVALSTLRRTPVKRNFTREVEVVGVGVGRQNDDVAVVVDDDDN   97 (784)
Q Consensus        18 Kf~Vklvv~rleG~~~~~~~~~~~~~~~~VEikWKGPK~~L~slrR~svkrn~T~e~~~~~~~~~~~~~~~~~~~~~~~~   97 (784)
                      .-.+.|.|.++.+|.....    ......|.|+..|.+      +||.+++| |.                         
T Consensus         6 ~g~L~v~v~~a~~L~~~~~----g~~dpyv~v~~~~~~------~kT~v~~~-t~-------------------------   49 (140)
T 2dmh_A            6 SGMLRVIVESASNIPKTKF----GKPDPIVSVIFKDEK------KKTKKVDN-EL-------------------------   49 (140)
T ss_dssp             CCEEEEEEEEEESCCCCSS----SCCCEEEEEECSSCE------EECCCCCS-CS-------------------------
T ss_pred             CcEEEEEEEEeeCCCCCCC----CCCCeEEEEEECCEe------EEeeeecC-CC-------------------------
Confidence            3456677779999877642    234578888886532      45566542 21                         


Q ss_pred             CCCCCceeeecccccceeeeccccCCceeceeEEEEEeecCCCCCCCccceEeeeeeehhhhhccccccceeee-eeeec
Q 003955           98 NIRSNGVVLWDEEFQSICTFSAYKENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEFASASEQEEFKLN-IPLTI  176 (784)
Q Consensus        98 ~~~~~~~VeW~EEFe~vc~ls~~k~~~F~PWevaFtVf~g~nqgpK~K~~v~GtasLNLAE~AS~ae~ke~ei~-lPLsv  176 (784)
                            .=.|||+|.=-+.    ....-.--.|-|.|+.--.- .++  -++|.+.+.|.++...... +..+. +||.-
T Consensus        50 ------nP~wne~f~f~v~----~~~~~~~~~l~i~V~d~d~~-~~~--~~lG~~~i~l~~l~~~~~~-~~w~~l~~l~~  115 (140)
T 2dmh_A           50 ------NPVWNEILEFDLR----GIPLDFSSSLGIIVKDFETI-GQN--KLIGTATVALKDLTGDQSR-SLPYKLISLLN  115 (140)
T ss_dssp             ------SCEEEEEEEEECS----SCCCCTTCEEEEEEEETTCS-SSC--CCCEEEEEEGGGTCSSSCE-EEEEEEEEEEC
T ss_pred             ------CCccCcEEEEEec----ccccCCCCEEEEEEEECCCC-CCC--ceEEEEEEEHHHhccCCCc-eeEEeeeeccC
Confidence                  2369999864332    11111235678899854332 233  4899999999999665432 34444 56765


Q ss_pred             cCCCCCCCCceeeEeeee
Q 003955          177 AAGAAEPCPSLCVSLSLL  194 (784)
Q Consensus       177 ~~ga~e~~p~L~vslsl~  194 (784)
                      +.+.. ....|+|+|++.
T Consensus       116 ~~~~~-~~G~l~l~~~~~  132 (140)
T 2dmh_A          116 EKGQD-TGATIDLVIGYD  132 (140)
T ss_dssp             TTCCE-EEEEEEEEEEEC
T ss_pred             CCCCC-CCCEEEEEEEEE
Confidence            54432 236888888884

PyMOL of 2dmh

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A	Back alignment and structure

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A	Back alignment and structure

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}	Back alignment and structure

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2	Back alignment and structure

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*	Back alignment and structure

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A	Back alignment and structure

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}	Back alignment and structure

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}	Back alignment and structure

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}	Back alignment and structure

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		784
d2nq3a1		133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	96.41
d1qasa2		131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	96.11
d1rlwa_		126	Domain from cytosolic phospholipase A2 {Human (Hom	94.49
d1gmia_		136	Domain from protein kinase C epsilon {Rat (Rattus	94.01
d2ep6a1		126	Multiple C2 and transmembrane domain-containing pr	91.4
d1ugka_		138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	87.15
d1bdya_		123	Domain from protein kinase C delta {Rat (Rattus no	86.13
d1a25a_		132	C2 domain from protein kinase c (beta) {Rat (Rattu	82.16
d2cjta1		128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	80.92
d1wfja_		136	C2 domain protein At1g63220 {Thale cress (Arabidop	80.66

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.024  Score=48.13  Aligned_cols=124  Identities=18%  Similarity=0.217  Sum_probs=73.2

Q ss_pred             EEEEEEEeecCCcccccccccccCeEEEEEEecCCccccccccccccccCccccceeeeccccccCCccceeecCCCCCC
Q 003955           20 EVKLVVGRMEGWDLVRGEAAEESDRLTVEIRWKGPKVALSTLRRTPVKRNFTREVEVVGVGVGRQNDDVAVVVDDDDNNI   99 (784)
Q Consensus        20 ~Vklvv~rleG~~~~~~~~~~~~~~~~VEikWKGPK~~L~slrR~svkrn~T~e~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (784)
                      ++.+.|..+.++......   .+.-..|+|+..|++      +||+++++ |.                           
T Consensus         7 ~L~v~v~~A~~~~~~~~~---~~~dpyv~v~~~~~~------~kT~v~~~-t~---------------------------   49 (133)
T d2nq3a1           7 QLQITVISAKLKENKKNW---FGPSPYVEVTVDGQS------KKTEKCNN-TN---------------------------   49 (133)
T ss_dssp             EEEEEEEEEEECCCC--C---CCCCEEEEEEETTEE------EECCCCSS-CS---------------------------
T ss_pred             EEEEEEEEeECCCcCCCC---CCcCeEEEEEECCeE------EeeEEEEe-cc---------------------------
Confidence            455566688877664321   233578899885543      36667653 22                           


Q ss_pred             CCCceeeecccccceeeeccccCCceeceeEEEEEeecCCCCCCCccceEeeeeeehhhhhccccc--cceeeeeeeecc
Q 003955          100 RSNGVVLWDEEFQSICTFSAYKENVFHPWEIAFTVFNGLNQGPKGKVPVVGSASLNLAEFASASEQ--EEFKLNIPLTIA  177 (784)
Q Consensus       100 ~~~~~VeW~EEFe~vc~ls~~k~~~F~PWevaFtVf~g~nqgpK~K~~v~GtasLNLAE~AS~ae~--ke~ei~lPLsv~  177 (784)
                          .-.|||.|+=    ......     .|-|.||.- +...++  .+||.+.++|+++...-..  .+..+.++|.-+
T Consensus        50 ----nP~wne~f~f----~~~~~~-----~l~~~V~d~-d~~~~d--~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~  113 (133)
T d2nq3a1          50 ----SPKWKQPLTV----IVTPVS-----KLHFRVWSH-QTLKSD--VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD  113 (133)
T ss_dssp             ----SCEEEEEEEE----EECTTC-----EEEEEEEEC-CSSSCC--EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred             ----cEEEcceEEE----EEEecc-----eeEEEEEEc-cCCCCC--ceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC
Confidence                2479999862    222221     578999863 233333  4899999999998654332  234444444444


Q ss_pred             CCCCCCCCceeeEeeeeee
Q 003955          178 AGAAEPCPSLCVSLSLLEL  196 (784)
Q Consensus       178 ~ga~e~~p~L~vslsl~El  196 (784)
                      .+.....-.|+|+|+.+.|
T Consensus       114 ~~~~~~~G~L~v~l~~~~~  132 (133)
T d2nq3a1         114 KEPTETIGDLSICLDGLQL  132 (133)
T ss_dssp             SCTTSEEEEEEEEEESEEC
T ss_pred             CCCceEEEEEEEEEeeEEc
Confidence            4555555677787776654

PyMOL of d2nq3a1

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure