Citrus Sinensis ID: 003980

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780--
MKPQYHLSLCLAIFLLLTTQCTPQQFACDKSKSETSQFPFCNSSLTYEDRAKNLVSLLTLKEKVQQLVNTATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANATNVMISNYAGIPCGYTSPLQGLQKYVSAVTYAPGCSNVKCKDDSLIEPAAKAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRANATANLPGRTYRFYSGKTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNRNSIHSSHAQAIDVTTVNCKDLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHTLIVGSPSERQVRHHLNVRLARSASETDLAIM
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccCEECcccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHccccccEEEEcccHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcEEEEcccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHccccCEEccccccccccccccHHHHHHHHHHccEEEEEEEcccccccccccccccccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEccccccccccccccccccEEEcccccEEEEEEEEccccccEEEcccccEEEEccEEEEEECccccccEEEEEEEEEECcccccccccc
****YHLSLCLAIFLLLTTQCTPQQF***********FPFCNSSLTYEDRAKNLVSLLTLKEKVQQLVNTATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANATNVMISNYAGIPCGYTSPLQGLQKYVSAVTYAPGCSNVKCKDDSLIEPAAKAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRANATANLPGRTYRFYSGKTVYPFGHGLSYSSFSKFIVSAPST*********IHSSHAQAIDVTTVNCKDLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHTLIVGSPSERQVRHHLNVRLARSAS****AIM
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SSSSSSSSSSSSSSSSSSSSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKPQYHLSLCLAIFLLLTTQCTPQQFACDKSKSETSQFPFCNSSLTYEDRAKNLVSLLTLKEKVQQLVNTATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANATNVMISNYAGIPCGYTSPLQGLQKYVSAVTYAPGCSNVKCKDDSLIEPAAKAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRANATANLPGRTYRFYSGKTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNRNSIHSSHAQAIDVTTVNCKDLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHTLIVGSPSERQVRHHLNVRLARSASETDLAIM

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable beta-D-xylosidase 5 confidentQ9LJN4
Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) A bifunctional beta-xylosidase/alpha-L-arabinosidase, exo-enzyme that acts synergistically with endohydrolases. Releases xylose and arabinose from cell walls. Does not cleave xylan from oat spelts although xylan from oat spelts was degraded to xylose when this enzyme was used in combination with xylanase. Also releases xylose and arabinose from aryl glycosides, xylo-oligosaccharides, arabinan from sugar beet and arabino-oligosaccharides, arabinan from sugar beet and arabinoxylan from wheat.probableA5JTQ2
Probable exo-1,4-beta-xylosidase xlnD Xylan 1,4-beta-xylosidase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose.probableA2QA27

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.2.-.-Glycosylases.probable
3.2.1.-Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.probable
3.2.1.37Xylan 1,4-beta-xylosidase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3ABZ, chain A
Confidence level:very confident
Coverage over the Query: 48-297,312-639,668-773
View the alignment between query and template
View the model in PyMOL
Template: 3RRX, chain A
Confidence level:very confident
Coverage over the Query: 46-95,106-461,477-596,611-635
View the alignment between query and template
View the model in PyMOL
Template: 3ZYZ, chain A
Confidence level:very confident
Coverage over the Query: 46-95,106-297,312-771
View the alignment between query and template
View the model in PyMOL
Template: 2X40, chain A
Confidence level:confident
Coverage over the Query: 49-192,204-632
View the alignment between query and template
View the model in PyMOL