Citrus Sinensis ID: 003980
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LJN4 | 781 | Probable beta-D-xylosidas | yes | no | 0.982 | 0.983 | 0.703 | 0.0 | |
| Q9FLG1 | 784 | Beta-D-xylosidase 4 OS=Ar | no | no | 0.962 | 0.960 | 0.559 | 0.0 | |
| A5JTQ2 | 774 | Beta-xylosidase/alpha-L-a | N/A | no | 0.959 | 0.968 | 0.564 | 0.0 | |
| A5JTQ3 | 774 | Beta-xylosidase/alpha-L-a | N/A | no | 0.966 | 0.976 | 0.552 | 0.0 | |
| Q94KD8 | 768 | Probable beta-D-xylosidas | no | no | 0.945 | 0.962 | 0.552 | 0.0 | |
| Q9LXD6 | 773 | Beta-D-xylosidase 3 OS=Ar | no | no | 0.959 | 0.970 | 0.538 | 0.0 | |
| Q9FGY1 | 774 | Beta-D-xylosidase 1 OS=Ar | no | no | 0.942 | 0.952 | 0.528 | 0.0 | |
| Q9LXA8 | 792 | Probable beta-D-xylosidas | no | no | 0.941 | 0.929 | 0.471 | 0.0 | |
| Q9SGZ5 | 767 | Probable beta-D-xylosidas | no | no | 0.943 | 0.962 | 0.485 | 0.0 | |
| Q0CB82 | 765 | Probable exo-1,4-beta-xyl | N/A | no | 0.878 | 0.898 | 0.392 | 1e-135 |
| >sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1145 bits (2962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/777 (70%), Positives = 637/777 (81%), Gaps = 9/777 (1%)
Query: 1 MKPQYHLSLCLAIFLLLTTQCTPQQ-FACDKSKSETSQFPFCNSSLTYEDRAKNLVSLLT 59
M + + L L I L+++ C Q+ FACD S T+++ FCN SL+YE RAK+LVS L+
Sbjct: 1 MSIRRFVRLSLLIIALVSSLCESQKNFACDISAPATAKYGFCNVSLSYEARAKDLVSRLS 60
Query: 60 LKEKVQQLVNTATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAA 119
LKEKVQQLVN ATG+PRLGVP YEWW EALHGVS+VGP V FN VPGATSFPA IL+AA
Sbjct: 61 LKEKVQQLVNKATGVPRLGVPPYEWWSEALHGVSDVGPGVHFNGTVPGATSFPATILTAA 120
Query: 120 SFNASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSK 179
SFN SLWLKMG+VVSTEARAM+NVG AGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSK
Sbjct: 121 SFNTSLWLKMGEVVSTEARAMHNVGLAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSK 180
Query: 180 YAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDT 239
YAVNYV+GLQ++ D+ S RLKVSSCCKHYTAYD+DNWKG+DRFHFDAKVTKQDLEDT
Sbjct: 181 YAVNYVKGLQDVHDA--GKSRRLKVSSCCKHYTAYDLDNWKGIDRFHFDAKVTKQDLEDT 238
Query: 240 YQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVY 299
YQ PFKSCV+EG VSSVMCSYNRVNGIPTCADPNLL+GV+R QW LDGYIVSDCDSIQVY
Sbjct: 239 YQTPFKSCVEEGDVSSVMCSYNRVNGIPTCADPNLLRGVIRGQWRLDGYIVSDCDSIQVY 298
Query: 300 DTAIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLM 359
I YT T EDAVALAL AGLNMNCGD+LGKYTENAV + K+ S VD+ALIYNYIVLM
Sbjct: 299 FNDIHYTKTREDAVALALKAGLNMNCGDFLGKYTENAVKLKKLNGSDVDEALIYNYIVLM 358
Query: 360 RLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAV 419
RLGFFDGDPKS P GNLGPSDVC+ DH+ LAL+AA+QGIVLL N G LPL + LAV
Sbjct: 359 RLGFFDGDPKSLPFGNLGPSDVCSKDHQMLALEAAKQGIVLLENRGDLPLPKTTVKKLAV 418
Query: 420 IGPNANATNVMISNYAGIPCGYTSPLQGLQKYV-SAVTYAPGCSNVKCKDDSLIEPAAKA 478
IGPNANAT VMISNYAG+PC YTSP+QGLQKYV + Y PGC +VKC D +LI A KA
Sbjct: 419 IGPNANATKVMISNYAGVPCKYTSPIQGLQKYVPEKIVYEPGCKDVKCGDQTLISAAVKA 478
Query: 479 AAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDI 538
+ ADV V+VVGLDQ++EAEGLDR NLTLPGYQEKLV +VANA K TV+LV+M+AGP+DI
Sbjct: 479 VSEADVTVLVVGLDQTVEAEGLDRVNLTLPGYQEKLVRDVANAAKKTVVLVIMSAGPIDI 538
Query: 539 SFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNM 598
SFAK+ I +LWVGYPG+AGGDAIAQ+IFGDYNP+GR P TWYPQ++ D++ MTDMNM
Sbjct: 539 SFAKNLSTIRAVLWVGYPGEAGGDAIAQVIFGDYNPSGRLPETWYPQEFADKVAMTDMNM 598
Query: 599 RANATANLPGRTYRFYSGKTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNRNSIHSSHAQA 658
R N+T+ PGR+YRFY+GK +Y FG+GLSYSSFS F++SAPS + IK N ++ + +
Sbjct: 599 RPNSTSGFPGRSYRFYTGKPIYKFGYGLSYSSFSTFVLSAPSIIHIKTN-PIMNLNKTTS 657
Query: 659 IDVTTVNCKDLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTA----GAPNVELVGFERV 714
+D++TVNC DL +VIGVKN+G SGSHVVL+FWKPP S + G P +LVGFERV
Sbjct: 658 VDISTVNCHDLKIRIVIGVKNHGLRSGSHVVLVFWKPPKCSKSLVGGGVPLTQLVGFERV 717
Query: 715 DVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHTLIVGSPSERQVRHHLNVRLA 771
+V + T+ TV FDVC+ L+LVDT G+RKLV G H L++GS S++Q+ HHLNVRLA
Sbjct: 718 EVGRSMTEKFTVDFDVCKALSLVDTHGKRKLVTGHHKLVIGSNSDQQIYHHLNVRLA 774
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1 | Back alignment and function description |
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| >sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1 | Back alignment and function description |
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| >sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q94KD8|BXL2_ARATH Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q0CB82|BXLB_ASPTN Probable exo-1,4-beta-xylosidase bxlB OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=bxlB PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| 255573163 | 810 | Beta-glucosidase, putative [Ricinus comm | 0.961 | 0.928 | 0.734 | 0.0 | |
| 225428983 | 818 | PREDICTED: probable beta-D-xylosidase 5- | 0.979 | 0.936 | 0.717 | 0.0 | |
| 147844622 | 925 | hypothetical protein VITISV_035506 [Viti | 0.983 | 0.831 | 0.713 | 0.0 | |
| 356574315 | 901 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.993 | 0.862 | 0.717 | 0.0 | |
| 9294427 | 876 | beta-1,4-xylosidase [Arabidopsis thalian | 0.988 | 0.882 | 0.699 | 0.0 | |
| 357444469 | 781 | Xylosidase [Medicago truncatula] gi|3554 | 0.973 | 0.974 | 0.723 | 0.0 | |
| 15230897 | 781 | putative beta-D-xylosidase 5 [Arabidopsi | 0.982 | 0.983 | 0.703 | 0.0 | |
| 296083056 | 896 | unnamed protein product [Vitis vinifera] | 0.937 | 0.818 | 0.711 | 0.0 | |
| 297834874 | 865 | beta-1,4-xylosidase [Arabidopsis lyrata | 0.966 | 0.873 | 0.690 | 0.0 | |
| 359485890 | 774 | PREDICTED: beta-xylosidase/alpha-L-arabi | 0.956 | 0.966 | 0.588 | 0.0 |
| >gi|255573163|ref|XP_002527511.1| Beta-glucosidase, putative [Ricinus communis] gi|223533151|gb|EEF34909.1| Beta-glucosidase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1193 bits (3087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/767 (73%), Positives = 663/767 (86%), Gaps = 15/767 (1%)
Query: 24 QQFACDKSKSETSQFPFCNSSLTYEDRAKNLVSLLTLKEKVQQLVNTATGIPRLGVPSYE 83
Q FACDK+ +T+ + FCN+SL+Y+DRAK+L+S LTL+EKVQQ+VN A GIPRLG+P+YE
Sbjct: 23 QNFACDKNSPQTNDYSFCNTSLSYQDRAKDLISRLTLQEKVQQVVNHAAGIPRLGIPAYE 82
Query: 84 WWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNV 143
WW EALHGVSNVG VRFN VPGATSFPA+ILSAASFN +LWLKMGQVVSTEAR M++V
Sbjct: 83 WWSEALHGVSNVGFGVRFNGTVPGATSFPAMILSAASFNETLWLKMGQVVSTEARTMHSV 142
Query: 144 GQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLK 203
G AGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVS+YAVNYVRGLQE+GD NS++D+LK
Sbjct: 143 GLAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSRYAVNYVRGLQEVGDEGNSTADKLK 202
Query: 204 VSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRV 263
VSSCCKHYTAYD+D WKGVDRFHFDAKVTKQDLEDTYQPPF+SCV+E HVSSVMCSYNRV
Sbjct: 203 VSSCCKHYTAYDLDKWKGVDRFHFDAKVTKQDLEDTYQPPFRSCVEEAHVSSVMCSYNRV 262
Query: 264 NGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNM 323
NGIPTCADP+LLKG++R +W LDGYIVSDCDSI+VY +I YTATPEDAVALAL AGLNM
Sbjct: 263 NGIPTCADPDLLKGIIRGEWNLDGYIVSDCDSIEVYYDSINYTATPEDAVALALKAGLNM 322
Query: 324 NCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCT 383
NCG++LGKYT +AV ++KV+ESVVDQALIYN+IVLMRLGFFDGDPKS GNLGPSDVC+
Sbjct: 323 NCGEFLGKYTVDAVKLNKVEESVVDQALIYNFIVLMRLGFFDGDPKSLLFGNLGPSDVCS 382
Query: 384 DDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANATNVMISNYAGIPCGYTS 443
D H+ LALDAARQGIVLL N GALPLS N T+NLAVIGPNAN T MISNYAGIPC YT+
Sbjct: 383 DGHQKLALDAARQGIVLLYNKGALPLSKNNTRNLAVIGPNANVTTTMISNYAGIPCKYTT 442
Query: 444 PLQGLQKYVSAVTYAPGCSNVKCKDDSLIEPAAKAAAAADVVVVVVGLDQSIEAEGLDRE 503
PLQGLQKYVS VTYA GC +V C DD+LI+ A +AAAAAD VV++VGLDQSIE EGLDRE
Sbjct: 443 PLQGLQKYVSTVTYAAGCKSVSCSDDTLIDAATQAAAAADAVVLLVGLDQSIEREGLDRE 502
Query: 504 NLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDA 563
NLTLPG+QEKLV++V NAT GTV+LVVM++ P+D+SFA + KI GILWVGYPGQAGGDA
Sbjct: 503 NLTLPGFQEKLVVDVVNATNGTVVLVVMSSSPIDVSFAVNKSKIKGILWVGYPGQAGGDA 562
Query: 564 IAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRANATANLPGRTYRFYSGKTVYPFG 623
+AQ++FGDYNPAGRSPFTWYPQ+Y Q+PMTDMNMRAN+TAN PGRTYRFY+G T+Y FG
Sbjct: 563 VAQVMFGDYNPAGRSPFTWYPQEYAHQVPMTDMNMRANSTANFPGRTYRFYAGNTLYKFG 622
Query: 624 HGLSYSSFSKFIVSAPSTVLIKKNRN-------SIHSS-------HAQAIDVTTVNCKDL 669
HGLSYS+FS FI+S PST+L+K N + S H+S ++QA+D+TT+NC +
Sbjct: 623 HGLSYSTFSNFIISGPSTLLLKTNSDLKPDIILSTHNSTEEHPFINSQAMDITTLNCTNS 682
Query: 670 HFHVVIGVKNNGPMSGSHVVLIFWKPPSAS-TAGAPNVELVGFERVDVQKGKTKNVTVGF 728
+++GV+NNGP+SG HVVL+FWKPP++S GA NV+LVGF RV+V +GKT+NVT+
Sbjct: 683 LLSLILGVRNNGPVSGDHVVLVFWKPPNSSEVTGAANVQLVGFSRVEVNRGKTQNVTLEI 742
Query: 729 DVCQGLNLVDTDGQRKLVIGLHTLIVGSPSERQVRHHLNVRLARSAS 775
DVC+ L+LVD++G+RKLV G H +GS +E QVRHHL+VRLA++ S
Sbjct: 743 DVCKRLSLVDSEGKRKLVTGQHIFTIGSDTEHQVRHHLDVRLAQNGS 789
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428983|ref|XP_002264114.1| PREDICTED: probable beta-D-xylosidase 5-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147844622|emb|CAN82161.1| hypothetical protein VITISV_035506 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356574315|ref|XP_003555294.1| PREDICTED: LOW QUALITY PROTEIN: probable beta-D-xylosidase 5-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|9294427|dbj|BAB02547.1| beta-1,4-xylosidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357444469|ref|XP_003592512.1| Xylosidase [Medicago truncatula] gi|355481560|gb|AES62763.1| Xylosidase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|15230897|ref|NP_188596.1| putative beta-D-xylosidase 5 [Arabidopsis thaliana] gi|259585724|sp|Q9LJN4.2|BXL5_ARATH RecName: Full=Probable beta-D-xylosidase 5; Short=AtBXL5; Flags: Precursor gi|332642747|gb|AEE76268.1| putative beta-D-xylosidase 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|296083056|emb|CBI22460.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297834874|ref|XP_002885319.1| beta-1,4-xylosidase [Arabidopsis lyrata subsp. lyrata] gi|297331159|gb|EFH61578.1| beta-1,4-xylosidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|359485890|ref|XP_002264183.2| PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 2-like [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| TAIR|locus:2091236 | 781 | AT3G19620 [Arabidopsis thalian | 0.971 | 0.973 | 0.698 | 5.7e-297 | |
| TAIR|locus:2174809 | 784 | XYL4 "beta-D-xylosidase 4" [Ar | 0.960 | 0.957 | 0.548 | 4.4e-226 | |
| TAIR|locus:2196060 | 768 | BXL2 "beta-xylosidase 2" [Arab | 0.943 | 0.960 | 0.546 | 3.8e-220 | |
| TAIR|locus:2144756 | 773 | BXL3 "AT5G09730" [Arabidopsis | 0.956 | 0.967 | 0.528 | 1.8e-213 | |
| TAIR|locus:2157994 | 774 | BXL1 "beta-xylosidase 1" [Arab | 0.939 | 0.949 | 0.521 | 1.5e-207 | |
| TAIR|locus:2029391 | 767 | AT1G78060 [Arabidopsis thalian | 0.952 | 0.971 | 0.482 | 5.5e-196 | |
| TAIR|locus:2142434 | 792 | AT5G10560 [Arabidopsis thalian | 0.781 | 0.771 | 0.506 | 4.7e-174 | |
| ASPGD|ASPL0000029139 | 763 | bxlB [Emericella nidulans (tax | 0.919 | 0.942 | 0.391 | 1.9e-129 | |
| UNIPROTKB|Q5ATH9 | 763 | bxlB "Exo-1,4-beta-xylosidase | 0.919 | 0.942 | 0.391 | 1.9e-129 | |
| ASPGD|ASPL0000048081 | 803 | xlnD [Emericella nidulans (tax | 0.907 | 0.884 | 0.370 | 4.4e-116 |
| TAIR|locus:2091236 AT3G19620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2851 (1008.7 bits), Expect = 5.7e-297, P = 5.7e-297
Identities = 537/769 (69%), Positives = 623/769 (81%)
Query: 9 LCLAIFLLLTTQCTPQQ-FACDKSKSETSQFPFCNSSLTYEDRAKNLVSLLTLKEKVQQL 67
L L I L+++ C Q+ FACD S T+++ FCN SL+YE RAK+LVS L+LKEKVQQL
Sbjct: 9 LSLLIIALVSSLCESQKNFACDISAPATAKYGFCNVSLSYEARAKDLVSRLSLKEKVQQL 68
Query: 68 VNTATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWL 127
VN ATG+PRLGVP YEWW EALHGVS+VGP V FN VPGATSFPA IL+AASFN SLWL
Sbjct: 69 VNKATGVPRLGVPPYEWWSEALHGVSDVGPGVHFNGTVPGATSFPATILTAASFNTSLWL 128
Query: 128 KMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRG 187
KMG+VVSTEARAM+NVG AGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYV+G
Sbjct: 129 KMGEVVSTEARAMHNVGLAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVKG 188
Query: 188 LQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSC 247
LQ++ D+ S RLKVSSCCKHYTAYD+DNWKG+DRFHFDAKVTKQDLEDTYQ PFKSC
Sbjct: 189 LQDVHDA--GKSRRLKVSSCCKHYTAYDLDNWKGIDRFHFDAKVTKQDLEDTYQTPFKSC 246
Query: 248 VQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTA 307
V+EG VSSVMCSYNRVNGIPTCADPNLL+GV+R QW LDGYIVSDCDSIQVY I YT
Sbjct: 247 VEEGDVSSVMCSYNRVNGIPTCADPNLLRGVIRGQWRLDGYIVSDCDSIQVYFNDIHYTK 306
Query: 308 TPEDAVALALNAGLNMNCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGD 367
T EDAVALAL AGLNMNCGD+LGKYTENAV + K+ S VD+ALIYNYIVLMRLGFFDGD
Sbjct: 307 TREDAVALALKAGLNMNCGDFLGKYTENAVKLKKLNGSDVDEALIYNYIVLMRLGFFDGD 366
Query: 368 PKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANAT 427
PKS P GNLGPSDVC+ DH+ LAL+AA+QGIVLL N G LPL + LAVIGPNANAT
Sbjct: 367 PKSLPFGNLGPSDVCSKDHQMLALEAAKQGIVLLENRGDLPLPKTTVKKLAVIGPNANAT 426
Query: 428 NVMISNYAGIPCGYTSPLQGLQKYV-SAVTYAPGCSNVKCKDDSLIEPXXXXXXXXXXXX 486
VMISNYAG+PC YTSP+QGLQKYV + Y PGC +VKC D +LI
Sbjct: 427 KVMISNYAGVPCKYTSPIQGLQKYVPEKIVYEPGCKDVKCGDQTLISAAVKAVSEADVTV 486
Query: 487 XXXGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRK 546
GLDQ++EAEGLDR NLTLPGYQEKLV +VANA K TV+LV+M+AGP+DISFAK+
Sbjct: 487 LVVGLDQTVEAEGLDRVNLTLPGYQEKLVRDVANAAKKTVVLVIMSAGPIDISFAKNLST 546
Query: 547 IGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRANATANL 606
I +LWVGYPG+AGGDAIAQ+IFGDYNP+GR P TWYPQ++ D++ MTDMNMR N+T+
Sbjct: 547 IRAVLWVGYPGEAGGDAIAQVIFGDYNPSGRLPETWYPQEFADKVAMTDMNMRPNSTSGF 606
Query: 607 PGRTYRFYSGKTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNRNSIHSSHAQAIDVTTVNC 666
PGR+YRFY+GK +Y FG+GLSYSSFS F++SAPS + IK N ++ + ++D++TVNC
Sbjct: 607 PGRSYRFYTGKPIYKFGYGLSYSSFSTFVLSAPSIIHIKTNP-IMNLNKTTSVDISTVNC 665
Query: 667 KDLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTA----GAPNVELVGFERVDVQKGKTK 722
DL +VIGVKN+G SGSHVVL+FWKPP S + G P +LVGFERV+V + T+
Sbjct: 666 HDLKIRIVIGVKNHGLRSGSHVVLVFWKPPKCSKSLVGGGVPLTQLVGFERVEVGRSMTE 725
Query: 723 NVTVGFDVCQGLNLVDTDGQRKLVIGLHTLIVGSPSERQVRHHLNVRLA 771
TV FDVC+ L+LVDT G+RKLV G H L++GS S++Q+ HHLNVRLA
Sbjct: 726 KFTVDFDVCKALSLVDTHGKRKLVTGHHKLVIGSNSDQQIYHHLNVRLA 774
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| TAIR|locus:2174809 XYL4 "beta-D-xylosidase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2196060 BXL2 "beta-xylosidase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2144756 BXL3 "AT5G09730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2157994 BXL1 "beta-xylosidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2029391 AT1G78060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2142434 AT5G10560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000029139 bxlB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ATH9 bxlB "Exo-1,4-beta-xylosidase bxlB" [Aspergillus nidulans FGSC A4 (taxid:227321)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000048081 xlnD [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q4WFI6 | BXLB_ASPFU | 3, ., 2, ., 1, ., 3, 7 | 0.3997 | 0.9283 | 0.9416 | yes | no |
| A2QA27 | XYND_ASPNC | 3, ., 2, ., 1, ., 3, 7 | 0.3617 | 0.9002 | 0.8756 | yes | no |
| Q5ATH9 | BXLB_EMENI | 3, ., 2, ., 1, ., 3, 7 | 0.3904 | 0.9194 | 0.9423 | yes | no |
| O00089 | XYND_ASPNG | 3, ., 2, ., 1, ., 3, 7 | 0.3617 | 0.9002 | 0.8756 | yes | no |
| A5JTQ3 | XYL2_MEDSV | 3, ., 2, ., 1, ., 5, 5 | 0.5526 | 0.9667 | 0.9767 | N/A | no |
| A5JTQ2 | XYL1_MEDSV | 3, ., 2, ., 1, ., 5, 5 | 0.5647 | 0.9590 | 0.9689 | N/A | no |
| Q9LJN4 | BXL5_ARATH | 3, ., 2, ., 1, ., - | 0.7039 | 0.9820 | 0.9833 | yes | no |
| Q2TYT2 | BXLB_ASPOR | 3, ., 2, ., 1, ., 3, 7 | 0.4 | 0.8670 | 0.8506 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1.37 | 0.946 |
| 3rd Layer | 3.2.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 |
 | GSVIVG00001462001 | SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (789 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 782 | |||
| PLN03080 | 779 | PLN03080, PLN03080, Probable beta-xylosidase; Prov | 0.0 | |
| PRK15098 | 765 | PRK15098, PRK15098, beta-D-glucoside glucohydrolas | 2e-82 | |
| pfam00933 | 296 | pfam00933, Glyco_hydro_3, Glycosyl hydrolase famil | 1e-63 | |
| pfam01915 | 221 | pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam | 4e-60 | |
| COG1472 | 397 | COG1472, BglX, Beta-glucosidase-related glycosidas | 2e-54 | |
| pfam14310 | 71 | pfam14310, Fn3-like, Fibronectin type III-like dom | 3e-09 |
| >gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional | Back alignment and domain information |
|---|
Score = 888 bits (2295), Expect = 0.0
Identities = 377/767 (49%), Positives = 500/767 (65%), Gaps = 29/767 (3%)
Query: 13 IFLLLTTQCTPQ---------QFACDKSKSETSQFPFCNSSLTYEDRAKNLVSLLTLKEK 63
+FLLL QF C S +PFCN+SL RA++LVSLLTL EK
Sbjct: 8 LFLLLFLLALGATFKAADAHPQFPCKPPTF--SAYPFCNASLPIPARARSLVSLLTLDEK 65
Query: 64 VQQLVNTATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNA-MVPGATSFPAVILSAASFN 122
+ QL NTA G+PRLG+P YEWW E+LHG+++ GP V FN+ V ATSFP VILSAASFN
Sbjct: 66 IAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGPGVSFNSGPVSAATSFPQVILSAASFN 125
Query: 123 ASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAV 182
SLW +G ++ EARAMYN GQAGLT+W+PN+N+FRDPRWGRGQETPGEDP V S Y+V
Sbjct: 126 RSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSV 185
Query: 183 NYVRGLQE---IGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDT 239
+V+G Q + +L +S+CCKHYTAYD++ W R+ F+A VT+QD+EDT
Sbjct: 186 EFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDT 245
Query: 240 YQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVY 299
YQPPFKSC+QEG S +MCSYN+VNG+P CA +LL+ RD+WG GYI SDCD++
Sbjct: 246 YQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQKA-RDEWGFQGYITSDCDAVATI 304
Query: 300 DTAIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLM 359
YT +PEDAVA L AG+++NCG Y+ ++T++A+ KV+E +D+AL + V +
Sbjct: 305 FEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQL 364
Query: 360 RLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGN-NGALPLSSNATQNLA 418
RLG FDGDP++ G LGP++VCT +H+ LAL+AARQGIVLL N LPL+ + +LA
Sbjct: 365 RLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLA 424
Query: 419 VIGPNANATNVMISNYAGIPCGYTSPLQGLQKYVSAVTYAPGCSNVKCKDDSLIEPAAKA 478
+IGP AN + +Y G+PC T+ +GLQ YV ++A GC +V C D+ A
Sbjct: 425 IIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAI 484
Query: 479 AAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDI 538
A AD VVVV GLD S E E DR +L LPG Q L+ VA+ +K V+LV+ GPVD+
Sbjct: 485 AKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDV 544
Query: 539 SFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNM 598
SFAK + +I ILW+GYPG+ GG A+A+IIFGDYNP GR P TWYP+ + +PMTDMNM
Sbjct: 545 SFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESFTA-VPMTDMNM 603
Query: 599 RANATANLPGRTYRFYSGKTVYPFGHGLSYSSFSKFIVSAPSTV---------LIKKNRN 649
RA+ + PGRTYRFY+G VY FG+GLSY+ FS I+SAP + I +
Sbjct: 604 RADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKPL 663
Query: 650 SIHSSHAQAIDVTTVN-CKDLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVEL 708
+ + + C+ L F+V I V N G M GSHVV++F + P G P +L
Sbjct: 664 LQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPP-VVPGVPEKQL 722
Query: 709 VGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHTLIVG 755
VGF+RV G++ + D C+ L++ + +G+R L +G H L++G
Sbjct: 723 VGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLG 769
|
Length = 779 |
| >gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216204 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|222669 pfam14310, Fn3-like, Fibronectin type III-like domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| PLN03080 | 779 | Probable beta-xylosidase; Provisional | 100.0 | |
| PRK15098 | 765 | beta-D-glucoside glucohydrolase; Provisional | 100.0 | |
| COG1472 | 397 | BglX Beta-glucosidase-related glycosidases [Carboh | 100.0 | |
| PF00933 | 299 | Glyco_hydro_3: Glycosyl hydrolase family 3 N termi | 100.0 | |
| PRK05337 | 337 | beta-hexosaminidase; Provisional | 100.0 | |
| PF01915 | 227 | Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter | 100.0 | |
| PF14310 | 71 | Fn3-like: Fibronectin type III-like domain; PDB: 3 | 99.81 | |
| PF07705 | 101 | CARDB: CARDB; InterPro: IPR011635 The APHP (acidic | 96.32 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.63 | |
| PF12690 | 82 | BsuPI: Intracellular proteinase inhibitor; InterPr | 92.2 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 87.79 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 86.44 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 86.41 | |
| PRK13202 | 104 | ureB urease subunit beta; Reviewed | 84.84 | |
| PRK13203 | 102 | ureB urease subunit beta; Reviewed | 84.42 | |
| cd00407 | 101 | Urease_beta Urease beta-subunit; Urease is a nicke | 82.2 | |
| TIGR00192 | 101 | urease_beta urease, beta subunit. In a number of s | 81.34 |
| >PLN03080 Probable beta-xylosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-165 Score=1462.86 Aligned_cols=731 Identities=51% Similarity=0.950 Sum_probs=638.7
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHHhhCCCCCCCCCCCCcccccccccccccccCCceecc
Q 003980 23 PQQFACDKSKSETSQFPFCNSSLTYEDRAKNLVSLLTLKEKVQQLVNTATGIPRLGVPSYEWWGEALHGVSNVGPAVRFN 102 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~ll~~MTleEKv~ql~~~~~~~~rlgip~~~~~~~~~~g~~~~g~g~~~~ 102 (782)
..+.+|++ +..+..||||++++.++|+++||++||||||++||.+.+.+++|||||.+.||+|++||++..++|+++.
T Consensus 27 ~~~~~c~~--~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~~g~~~~ 104 (779)
T PLN03080 27 HPQFPCKP--PTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGPGVSFN 104 (779)
T ss_pred CCCcCCCC--ccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCCCccccc
Confidence 34567864 4456689999999999999999999999999999999899999999999999999999998888888773
Q ss_pred -CCCCCcccCchhhHHHhcCCHHHHHHHHHHHHHHHHhhhccCCCCceeecccccccCCCCCCcccCCCCCChHHHHHHH
Q 003980 103 -AMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYA 181 (782)
Q Consensus 103 -~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~~~~Gi~~~aP~~dv~r~p~~gR~~esfgeDP~l~~~~a 181 (782)
+.+.++|.||++|++|||||++|++++|+++|+|+|+++|.+..|+++|+|++||.|||||||++|||||||+|+++|+
T Consensus 105 ~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a 184 (779)
T PLN03080 105 SGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYS 184 (779)
T ss_pred cCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHH
Confidence 3455789999999999999999999999999999999976655577889999999999999999999999999999999
Q ss_pred HHHHHHHhhccCC---CCCCCCCceeeeeeccccccccCCCCCCcccccccccCHHHHHhhcCHHHHHHHHcCCcceEEe
Q 003980 182 VNYVRGLQEIGDS---KNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMC 258 (782)
Q Consensus 182 ~a~v~GlQ~~~~g---~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~ 258 (782)
.|||+|||+.+.. ...+.++.+|+||+||||||+++.+.+..|...++.+++++|+|+||+||++||++|.+++|||
T Consensus 185 ~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~ 264 (779)
T PLN03080 185 VEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMC 264 (779)
T ss_pred HHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEe
Confidence 9999999984100 0001134569999999999999877777888889999999999999999999999998889999
Q ss_pred eccccCCccccCCHHHHHHHhhhhcCcCcEEEcCchhhhhhhccccccCChHHHHHHHHHcCCCccCCcchhHHHHHHHH
Q 003980 259 SYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVN 338 (782)
Q Consensus 259 sy~~vng~pa~~s~~ll~~iLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~~~~l~~av~ 338 (782)
|||++||+|||.|++||++ ||+||||+|+|||||++|..+...|++..+.+|++++||+||+||+|..++.+.|.+||+
T Consensus 265 sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~ 343 (779)
T PLN03080 265 SYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIE 343 (779)
T ss_pred CCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHH
Confidence 9999999999999999986 999999999999999999999988888888999999999999999998877789999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhhceEeccCC-CCCCCCCCCCCcE
Q 003980 339 MSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNN-GALPLSSNATQNL 417 (782)
Q Consensus 339 ~G~i~~~~ld~av~RiL~~k~~~Glf~~~p~~~~~~~~~~~~~~~~~h~~la~~~A~esiVLLKN~-~~LPL~~~~~~kI 417 (782)
+|+|++++||+||+|||++|+++|+|+.+|...+|.+.....+.+++|+++|+++|+||||||||+ ++|||++.+.+||
T Consensus 344 ~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~I 423 (779)
T PLN03080 344 KGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSL 423 (779)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEE
Confidence 999999999999999999999999999544333455444567889999999999999999999999 8999987656799
Q ss_pred EEEccCCCcccccccCCCcCCCCcCCHHHHHhhcccceeecCCCCCCccCCCcchHHHHHHhhcCCeEEEEEccCCcccc
Q 003980 418 AVIGPNANATNVMISNYAGIPCGYTSPLQGLQKYVSAVTYAPGCSNVKCKDDSLIEPAAKAAAAADVVVVVVGLDQSIEA 497 (782)
Q Consensus 418 aviG~~a~~~~~~~G~~~g~~~~~~t~l~gl~~~~~~v~y~~G~~~~~~~~~~~~~~a~~~a~~aD~vIv~vG~~~~~~~ 497 (782)
+||||+++....++|+|++.+++.+|++++|+++...+.|..||....+.+...+++|+++|++||+|||++|.+...++
T Consensus 424 aViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~ 503 (779)
T PLN03080 424 AIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQET 503 (779)
T ss_pred EEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccc
Confidence 99999999988778889998899999999999987667899998655544556789999999999999999999988999
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEecCCeeeeccccccCCccEEEEccCCCchhHHHHHHHHhcCCCCccc
Q 003980 498 EGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGR 577 (782)
Q Consensus 498 Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~~G~e~g~AiAdVL~G~~nPsGk 577 (782)
|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+.+.++++|||++|||||++|+||||||||++|||||
T Consensus 504 E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGk 583 (779)
T PLN03080 504 EDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGR 583 (779)
T ss_pred cCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCc
Confidence 99999999999999999999998777799999999999999998766789999999999999999999999999999999
Q ss_pred cCcccCCCcccCCCCCcCCccccccCCCCCCCccccCCCCCccccCCCCCccCcccccccCCccceeeccc-CcccCCcc
Q 003980 578 SPFTWYPQQYVDQLPMTDMNMRANATANLPGRTYRFYSGKTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNR-NSIHSSHA 656 (782)
Q Consensus 578 LPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~~~Yr~~~~~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~-~~~~~~~~ 656 (782)
||+||||+++ .|+|++|+++++++..+||+++||||+.+|+||||||||||||+||+++++..+.++... ........
T Consensus 584 LPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~ 662 (779)
T PLN03080 584 LPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKP 662 (779)
T ss_pred Ceeeeccccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEecccccccccccccccccccccccc
Confidence 9999989887 579999888877666678999999999999999999999999999998754321111000 00000000
Q ss_pred -----c---cccccc-ccCCCceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEE
Q 003980 657 -----Q---AIDVTT-VNCKDLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVG 727 (782)
Q Consensus 657 -----~---~~~~~~-~~~~~~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~ 727 (782)
. ...... ..|+...++|+|+|||||+++|+||||||+++|.++ +.+|.|||+||+||+|+||||++|+|+
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~-~~~P~k~L~gF~kv~L~~Ges~~V~~~ 741 (779)
T PLN03080 663 LLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVV-PGVPEKQLVGFDRVHTASGRSTETEIV 741 (779)
T ss_pred ccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccC-CCCcchhccCcEeEeeCCCCEEEEEEE
Confidence 0 000000 112212699999999999999999999999999887 789999999999999999999999999
Q ss_pred eccCCCceEEeCCCCEEEeCeEEEEEEeCCC
Q 003980 728 FDVCQGLNLVDTDGQRKLVIGLHTLIVGSPS 758 (782)
Q Consensus 728 l~~~~~ls~~d~~~~~~~e~G~y~i~vG~ss 758 (782)
|+++++|++||.+++|++|+|+|+|+||.++
T Consensus 742 l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~ 772 (779)
T PLN03080 742 VDPCKHLSVANEEGKRVLPLGDHVLMLGDLE 772 (779)
T ss_pred eCchHHceEEcCCCcEEEeCccEEEEEeCCc
Confidence 9965789999999999999999999999665
|
|
| >PRK15098 beta-D-glucoside glucohydrolase; Provisional | Back alignment and domain information |
|---|
| >COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PRK05337 beta-hexosaminidase; Provisional | Back alignment and domain information |
|---|
| >PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 | Back alignment and domain information |
|---|
| >PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A | Back alignment and domain information |
|---|
| >PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins | Back alignment and domain information |
|---|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
| >PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo | Back alignment and domain information |
|---|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13202 ureB urease subunit beta; Reviewed | Back alignment and domain information |
|---|
| >PRK13203 ureB urease subunit beta; Reviewed | Back alignment and domain information |
|---|
| >cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
| >TIGR00192 urease_beta urease, beta subunit | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 782 | ||||
| 4i3g_A | 829 | Crystal Structure Of Desr, A Beta-glucosidase From | 7e-34 | ||
| 4i3g_A | 829 | Crystal Structure Of Desr, A Beta-glucosidase From | 2e-19 | ||
| 2x40_A | 721 | Structure Of Beta-Glucosidase 3b From Thermotoga Ne | 6e-32 | ||
| 2x42_A | 721 | Structure Of Beta-Glucosidase 3b From Thermotoga Ne | 4e-31 | ||
| 3rrx_A | 822 | Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Bet | 3e-29 | ||
| 3usz_A | 822 | Crystal Structure Of Truncated Exo-1,31,4-Beta-Gluc | 3e-29 | ||
| 3zyz_A | 713 | Crystal Structure Of A Glycoside Hydrolase Family 3 | 5e-27 | ||
| 4i8d_A | 714 | Crystal Structure Of Beta-D-Glucoside Glucohydrolas | 5e-27 | ||
| 1lq2_A | 602 | Crystal Structure Of Barley Beta-D-Glucan Glucohydr | 4e-26 | ||
| 1ex1_A | 605 | Beta-D-Glucan Exohydrolase From Barley Length = 605 | 5e-26 | ||
| 3ac0_A | 845 | Crystal Structure Of Beta-Glucosidase From Kluyvero | 4e-19 | ||
| 3ac0_A | 845 | Crystal Structure Of Beta-Glucosidase From Kluyvero | 2e-17 | ||
| 3abz_A | 845 | Crystal Structure Of Se-Met Labeled Beta-Glucosidas | 4e-17 | ||
| 3tev_A | 351 | The Crystal Structure Of Glycosyl Hydrolase From De | 5e-04 |
| >pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 | Back alignment and structure |
|
| >pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 | Back alignment and structure |
| >pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 | Back alignment and structure |
| >pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 | Back alignment and structure |
| >pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 | Back alignment and structure |
| >pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 | Back alignment and structure |
| >pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a Resolution. Length = 713 | Back alignment and structure |
| >pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei Length = 714 | Back alignment and structure |
| >pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole Length = 602 | Back alignment and structure |
| >pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley Length = 605 | Back alignment and structure |
| >pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 | Back alignment and structure |
| >pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 | Back alignment and structure |
| >pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 | Back alignment and structure |
| >pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From Deinococcus Radiodurans R1 Length = 351 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 | Back alignment and structure |
|---|
Score = 470 bits (1212), Expect = e-156
Identities = 171/799 (21%), Positives = 305/799 (38%), Gaps = 162/799 (20%)
Query: 49 DRAKNLVSLLTLKEKVQQL-------------------VNTATGIPRLGVPSYEWWGEAL 89
++ ++S LTL+EKV+ + +PR+G+P++ +
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-VLADGP 60
Query: 90 HGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAM-YNVGQAGL 148
G+ T+FP I+ A+++N L ++G+ + E R +V
Sbjct: 61 AGLRINPTRENDENTYY-TTAFPVEIMLASTWNRELLEEVGKAMGEEVREYGVDVL---- 115
Query: 149 TYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCC 208
+P +N+ R+P GR E EDP++ + A ++V+G+Q G V +C
Sbjct: 116 --LAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----------VGACI 162
Query: 209 KHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPT 268
KH+ A + + R D V+++ L + Y F+ V++ SVM +YN++NG
Sbjct: 163 KHFVANNQETN----RMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYC 218
Query: 269 CADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNM----- 323
+ LLK V+R++WG +G+++SD + ++ V L AG ++
Sbjct: 219 SQNEWLLKKVLREEWGFEGFVMSDWYAG-------------DNPVE-QLKAGNDLIMPGK 264
Query: 324 -----NCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGP 378
+ A+ K+ E V+D+ + VL+ F S
Sbjct: 265 AYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNKPD---- 320
Query: 379 SDVCTDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANATNVMISNYAGI- 437
+ H +A +A +G+VLL N ALPLS N+ +A+ G T +
Sbjct: 321 ----LEKHAKVAYEAGAEGVVLLRNEEALPLSENSK--IALFGTGQIETIKGGTGSGDTH 374
Query: 438 PCGYTSPLQGLQKYV--SAVTYAPGCSN------------------------VKCKDDSL 471
P S L+G+++ A + ++
Sbjct: 375 PRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLS 434
Query: 472 IEPAAKAAAAADVVVVVVGLDQSIEAEGLDRE----NLTLPGYQEKLVMEVANATKGT-- 525
+ K A DV V+V+ EG DR+ + L + L+ V+
Sbjct: 435 EKEIHKLAKKNDVAVIVISRISG---EGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGK 491
Query: 526 -VILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYP 584
VI+++ PV++ + + GIL V GQ G +A ++ G NP+G+ P T+ P
Sbjct: 492 KVIVLLNIGSPVEVVSWRDL--VDGILLVWQAGQETGRIVADVLTGRINPSGKLPTTF-P 548
Query: 585 QQYVDQLPMTDMNMRANATANLPGRT------YRFY--SGKTV-YPFGHGLSYSSF--SK 633
+ +P YR+Y G Y FG+GLSY++F S
Sbjct: 549 RD-YSDVPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFEYSD 607
Query: 634 FIVSAPSTVLIKKNRNSIHSSHAQAIDVTTVNCKDLHFHVVIGVKNNGPMSGSHVVLIFW 693
VS L V ++N G +G V ++
Sbjct: 608 LNVSFDGETL----------------------------RVQYRIENTGGRAGKEVSQVYI 639
Query: 694 KPPSASTAGAPNVELVGFERVDV-QKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHTL 752
K P P EL F + + G+++ V + V + L + + + + G + +
Sbjct: 640 KAPKGK-IDKPFQELKAFHKTRLLNPGESEEVVLEIPV-RDLASFNGE-EWVVEAGEYEV 696
Query: 753 IVGSPSERQVRHHLNVRLA 771
VG+ S R ++ +
Sbjct: 697 RVGA-SSRNIKLKGTFSVG 714
|
| >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 | Back alignment and structure |
|---|
| >3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 | Back alignment and structure |
|---|
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 | Back alignment and structure |
|---|
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 | Back alignment and structure |
|---|
| >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 | Back alignment and structure |
|---|
| >3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Length = 535 | Back alignment and structure |
|---|
| >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 | Back alignment and structure |
|---|
| >3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Length = 351 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| 3abz_A | 845 | Beta-glucosidase I; glycoside hydrolase family3 be | 100.0 | |
| 3zyz_A | 713 | Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 | 100.0 | |
| 2x41_A | 721 | Beta-glucosidase; hydrolase, TIM barrel fold, fibr | 100.0 | |
| 1x38_A | 602 | Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai | 100.0 | |
| 3rrx_A | 822 | EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( | 100.0 | |
| 3bmx_A | 642 | Uncharacterized lipoprotein YBBD; beta-N-hexosamin | 100.0 | |
| 3sql_A | 535 | Glycosyl hydrolase family 3; structural genomics, | 100.0 | |
| 3tev_A | 351 | Glycosyl hyrolase, family 3; PSI-biology, midwest | 100.0 | |
| 4gvf_A | 349 | Beta-hexosaminidase; TIM-barrel, hydrolase; HET: N | 100.0 | |
| 4g6c_A | 348 | Beta-hexosaminidase 1; ssgcid, niaid, structural g | 100.0 | |
| 2oxn_A | 340 | Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O | 100.0 | |
| 3idu_A | 127 | Uncharacterized protein; all beta-protein, structu | 96.7 | |
| 2l0d_A | 114 | Cell surface protein; structural genomics, northea | 95.58 | |
| 2kut_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.55 | |
| 3isy_A | 120 | Bsupi, intracellular proteinase inhibitor; intrace | 90.77 | |
| 1w8o_A | 601 | Bacterial sialidase; 3D-structure, glycosidase, hy | 87.9 | |
| 2iaa_C | 128 | Azurin; quinoprotein, tryptophan tryptophylquinone | 84.05 | |
| 1cuo_A | 129 | Protein (azurin ISO-2); beta barrel, periplasmic, | 83.29 | |
| 4ep8_B | 101 | Urease subunit beta; alpha-beta barrel, nickel met | 83.16 | |
| 2x3c_A | 343 | Toxic extracellular endopeptidase; hydrolase; 1.99 | 81.11 |
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-149 Score=1333.50 Aligned_cols=641 Identities=27% Similarity=0.438 Sum_probs=555.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhhC----CCCCCCCCCCCcccccccccccccccCCceeccCCCCCcccCchhhHHHhcCCH
Q 003980 48 EDRAKNLVSLLTLKEKVQQLVN----TATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNA 123 (782)
Q Consensus 48 ~~r~~~ll~~MTleEKv~ql~~----~~~~~~rlgip~~~~~~~~~~g~~~~g~g~~~~~~~~~~t~fP~~~~laat~d~ 123 (782)
+.|+++||++||||||++||.+ ...+++|+|||.+ ++.|++||++ +.++.+ ..++|.||+++++|||||+
T Consensus 3 ~~r~~~ll~~mTleEKi~~l~g~~~~~~~~~~rlgiP~l-~~~D~~~G~~----~~~~~~-~~~~t~fP~~~~laat~d~ 76 (845)
T 3abz_A 3 KFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAV-RVSDGPNGIR----GTKFFD-GVPSGCFPNGTGLASTFDR 76 (845)
T ss_dssp CCCHHHHHHHCCHHHHHHHTBCSSSSBCCCBGGGTBCCC-BEEECTTSCC----CSCSTT-CCCBCCCCCHHHHHHTCCH
T ss_pred HHHHHHHHHcCCHHHHHHHhcCCCccccccCcccCCCCE-EEEecCCCee----eeeccC-CCCcCcCcCHHHHHhcCCH
Confidence 3579999999999999999986 3567899999999 6899999975 122211 1248999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCcee-ecccccccCCCCCCcccCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003980 124 SLWLKMGQVVSTEARAMYNVGQAGLTY-WSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRL 202 (782)
Q Consensus 124 ~l~~~~g~~~g~E~ra~~~~~~~Gi~~-~aP~~dv~r~p~~gR~~esfgeDP~l~~~~a~a~v~GlQ~~~~g~~~~~~~~ 202 (782)
+|++++|+++|+|+|++ |+|+ |||++||.|||+|||++|||||||+|+++|+.|+|+|||++ |
T Consensus 77 ~l~~~~g~~~g~E~ra~------Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~--g-------- 140 (845)
T 3abz_A 77 DLLETAGKLMAKESIAK------NAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGE--G-------- 140 (845)
T ss_dssp HHHHHHHHHHHHHHHHT------TCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHT--T--------
T ss_pred HHHHHHHHHHHHHHHHc------CCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhC--C--------
Confidence 99999999999999999 9998 99999999999999999999999999999999999999998 8
Q ss_pred eeeeeeccccccccCCCCCCcccccccccCHHHHHhhcCHHHHHHHHcCCcceEEeeccccCCccccCCHHHHHHHhhhh
Q 003980 203 KVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQ 282 (782)
Q Consensus 203 ~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~e 282 (782)
|++|+||||||+++ ++|...++.+++++|+|+||+||++||+++.+++||||||++||+|||+|++||++|||+|
T Consensus 141 -V~a~~KHFpg~g~e----~~r~~~~~~v~~~~L~e~~L~PF~~ai~~ag~~~VM~syn~ing~pa~~s~~ll~~lLR~e 215 (845)
T 3abz_A 141 -IAATVKHFVCNDLE----DQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDE 215 (845)
T ss_dssp -CBCEEEEETTCCCC----TTTTTCEEECCHHHHHHTTSHHHHHHHHHHCCSEEEECSSEETTEEGGGCHHHHTCCCCCC
T ss_pred -eeEEeeccccCCcc----cCCccccCCCCHHHHHHhhHHHHHHHHHhcCCCEEEecCCCcCCEeccCCHHHHHHHHhhc
Confidence 99999999999865 3577778889999999999999999997444679999999999999999999999999999
Q ss_pred cCcCcEEEcCchhhhhhhccccccCChHHHHHHHHHcCCCccCCc---chh-HHHHHHHHCCC-CcHHHHHHHHHHHHHH
Q 003980 283 WGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNCGD---YLG-KYTENAVNMSK-VKESVVDQALIYNYIV 357 (782)
Q Consensus 283 ~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~---~~~-~~l~~av~~G~-i~~~~ld~av~RiL~~ 357 (782)
|||+|+|||||+++. ++++|++||+||+|+. ++. +.|.+||++|+ |++++||+||+|||++
T Consensus 216 ~GF~G~VvSD~~~~~--------------~~~~Al~AG~D~~m~~~~~~~~~~~l~~av~~G~~i~~~~id~av~RIL~~ 281 (845)
T 3abz_A 216 WKWDGMLMSDWFGTY--------------TTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKM 281 (845)
T ss_dssp TCCCSEEECCTTCCC--------------CSHHHHHHTCCBBCSSSCSSCCHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEcccccHH--------------HHHHHHHcCCCcccCCchhhhHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 999999999998763 2478999999999962 223 38999999999 9999999999999999
Q ss_pred HHHhC----CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhhceEeccCC-CCCCCCCCCCCcEEEEccCCCccccccc
Q 003980 358 LMRLG----FFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNN-GALPLSSNATQNLAVIGPNANATNVMIS 432 (782)
Q Consensus 358 k~~~G----lf~~~p~~~~~~~~~~~~~~~~~h~~la~~~A~esiVLLKN~-~~LPL~~~~~~kIaviG~~a~~~~~~~G 432 (782)
|+++| +|+ +|. .......+++++|+++|+++|+||||||||+ ++|||++ .+||+||||+|+....++|
T Consensus 282 k~~~g~l~~~~~-~p~----~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~--~~~iaviGp~A~~~~~~Gg 354 (845)
T 3abz_A 282 IKFVVDNLEKTG-IVE----NGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKK--EDNIIVIGPNAKAKTSSGG 354 (845)
T ss_dssp HHHHHHTHHHHC-CCT----TCCCCCTTCSHHHHHHHHHHHHHHCEEEEECTTCCSCCT--TSCEEEESTTTSCCCCSCB
T ss_pred HHHhCCcccccc-CCc----cCccccccCCHHHHHHHHHHHHhCcEEeccCCcccCCCC--CCEEEEEcCCcchhhccCC
Confidence 99999 998 442 2212234789999999999999999999999 8999986 4799999999998876665
Q ss_pred CCCc-CCCCcCCHHHHHhhccc-ceeecCCCCCC------------------------------------c---------
Q 003980 433 NYAG-IPCGYTSPLQGLQKYVS-AVTYAPGCSNV------------------------------------K--------- 465 (782)
Q Consensus 433 ~~~g-~~~~~~t~l~gl~~~~~-~v~y~~G~~~~------------------------------------~--------- 465 (782)
+++. .+.+.+||++||+++.. .|.|+.||... .
T Consensus 355 gs~~~~~~~~vtpl~gi~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~ 434 (845)
T 3abz_A 355 GSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHV 434 (845)
T ss_dssp STTCCCBSCCCCHHHHHHHHHTSCCEEECCCCCCSSCCBSGGGEESSTTSCSCTTTBSEEEEEESSCTTTSCTTCCCSEE
T ss_pred CccCcccCCcCCHHHHHHHhhcCceeeccccccccccccccccccccccccccCCCCceEEEEeccCcccCcccccceee
Confidence 5554 57889999999998754 46677665310 0
Q ss_pred --------------------------------------------------------------------------------
Q 003980 466 -------------------------------------------------------------------------------- 465 (782)
Q Consensus 466 -------------------------------------------------------------------------------- 465 (782)
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~l~idg~~v~~~~~~~~~~~~~~~~~~~~ 514 (845)
T 3abz_A 435 TKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKE 514 (845)
T ss_dssp EEECSSEEECTTCCCTTSBTTBCCCEEEEEEEECCSSSEEEEEEEEEESEEEEEETTEEEEEESSSCCBCSTTTTTSBCC
T ss_pred eeccccceeecccccccccccccceeEEEEEEEecCCCccEEEEEeecCceEEEECCEEEeeccccccccccccccCccc
Confidence
Q ss_pred ------------------c------------------------CC-CcchHHHHHHhhcCCeEEEEEccCCcccccCCCC
Q 003980 466 ------------------C------------------------KD-DSLIEPAAKAAAAADVVVVVVGLDQSIEAEGLDR 502 (782)
Q Consensus 466 ------------------~------------------------~~-~~~~~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr 502 (782)
. .+ ...+++|+++|++||+||||+|.++..++||.||
T Consensus 515 ~~~~~~l~~g~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR 594 (845)
T 3abz_A 515 RTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDR 594 (845)
T ss_dssp EEEEEEECTTCCEEEEEEEECTTTSCCSSCCCCCEEEEEEEECCCHHHHHHHHHHHHHTSSEEEEEEECCTTTSBTTBCC
T ss_pred ceeEEEecCCceeeEEEEeccCCcccccccccccceeecccccccchhhHHHHHHHHhcCCEEEEEEecCCccccccCCc
Confidence 0 00 0235678899999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEEEecCCeeeeccccccCCccEEEEccCCCchhHHHHHHHHhcCCCCccccCccc
Q 003980 503 ENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTW 582 (782)
Q Consensus 503 ~~l~Lp~~q~~Li~~va~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~~G~e~g~AiAdVL~G~~nPsGkLPvT~ 582 (782)
.+|.||+.|++||++|+++ ++|||||+++|+|++|+|++ +++|||++|||||++|+||||||||++|||||||+||
T Consensus 595 ~~l~LP~~Q~~LI~aV~a~-~~~tVVVl~sG~pv~m~w~~---~v~AIL~aw~pGqegG~AiAdVLfG~vNPSGkLP~T~ 670 (845)
T 3abz_A 595 ENMDLPKRTNELVRAVLKA-NPNTVIVNQSGTPVEFPWLE---DANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW 670 (845)
T ss_dssp SSSCCCTTHHHHHHHHHHH-CSCEEEEEECSSCCCCTTGG---GCSEEEECCCCCTTHHHHHHHHHTTSSCCCCCCSSCB
T ss_pred ccccCCHHHHHHHHHHHHh-CCCEEEEEeCCCcccCcchh---ccCeEEEcCCCcHHHHHHHHHHhcCCcCCCCCCceee
Confidence 9999999999999999975 67899999999999999984 7999999999999999999999999999999999998
Q ss_pred CCCcccCCCCCcCCccccccCCCCCC---CccccCC---CCCccccCCCCCccCcccc--cccCCccceeecccCcccCC
Q 003980 583 YPQQYVDQLPMTDMNMRANATANLPG---RTYRFYS---GKTVYPFGHGLSYSSFSKF--IVSAPSTVLIKKNRNSIHSS 654 (782)
Q Consensus 583 ~p~~~~~~~p~~~~~~~~~~~~~~~~---~~Yr~~~---~~~~ypFG~GLSYTtF~ys--~~~~~~~~~~~~~~~~~~~~ 654 (782)
|++. +|+|.++..........|.+ .+||||+ .+|+||||||||||||+|| +++++
T Consensus 671 -p~~~-~d~P~~~~~~~~~g~~~y~eg~~vgYR~y~~~~~~plfPFG~GLSYTtF~ys~~~l~v~--------------- 733 (845)
T 3abz_A 671 -PFKL-QDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVT--------------- 733 (845)
T ss_dssp -CSSG-GGSTTTTSCSCBTTEEECTTTTCCTHHHHHHHTCCCSBCTTCCBCSSCEEEEEEEEEEC---------------
T ss_pred -eCch-hhCCccccCCCCCCceeccCCccCCCcchhcCCCceeecccCCCcceeEEEeccccccc---------------
Confidence 6775 56887543211011111221 3699997 5799999999999999999 98721
Q ss_pred cccccccccccCCCceEEEEEEEEeCC-CCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEec-cCC
Q 003980 655 HAQAIDVTTVNCKDLHFHVVIGVKNNG-PMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFD-VCQ 732 (782)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~v~v~VtNtG-~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~-~~~ 732 (782)
++.++|+|+||||| +++|+||||||+++|.++ +.+|.|+||||+||+|+||||++|+|+|+ . +
T Consensus 734 -------------~~~~~v~v~V~NtG~~~~G~eVvQlYv~~~~~~-~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~-~ 798 (845)
T 3abz_A 734 -------------DDKIAISVDVKNTGDKFAGSEVVQVYFSALNSK-VSRPVKELKGFEKVHLEPGEKKTVNIDLELK-D 798 (845)
T ss_dssp -------------SSEEEEEEEEEECCSSCCEEEEEEEEEEESSCS-SCCCSCEEEEEEEEEECTTCEEEEEEEEEHH-H
T ss_pred -------------CCeEEEEEEEEECCcCCCcceeeeeeEeCCCCC-cchhhheeccceeEEECCCCEEEEEEEeCCh-H
Confidence 24799999999999 999999999999999988 89999999999999999999999999999 8 7
Q ss_pred CceEEeCC-CCEEEeCeEEEEEEeCCCcccceeEEEEEEecC
Q 003980 733 GLNLVDTD-GQRKLVIGLHTLIVGSPSERQVRHHLNVRLARS 773 (782)
Q Consensus 733 ~ls~~d~~-~~~~~e~G~y~i~vG~ss~~~~~~~~~~~~~~~ 773 (782)
+|++||.. ++|++|+|+|+|+||.||+ |++++.+|+|.++
T Consensus 799 ~l~~~d~~~~~~~~e~G~y~v~vG~ss~-di~l~~~~~v~~~ 839 (845)
T 3abz_A 799 AISYFNEELGKWHVEAGEYLVSVGTSSD-DILSVKEFKVEKE 839 (845)
T ss_dssp HHCEEETTTTEEEECSEEEEEEEESSTT-CEEEEEEEEECCC
T ss_pred HeeEEecCCCeEEEcCCEEEEEEECCCC-CceeEEEEEECce
Confidence 99999996 7899999999999999995 8999999998643
|
| >3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* | Back alignment and structure |
|---|
| >2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* | Back alignment and structure |
|---|
| >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* | Back alignment and structure |
|---|
| >3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A | Back alignment and structure |
|---|
| >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* | Back alignment and structure |
|---|
| >3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* | Back alignment and structure |
|---|
| >3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A* | Back alignment and structure |
|---|
| >4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A* | Back alignment and structure |
|---|
| >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A | Back alignment and structure |
|---|
| >3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A | Back alignment and structure |
|---|
| >2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} | Back alignment and structure |
|---|
| >2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* | Back alignment and structure |
|---|
| >2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* | Back alignment and structure |
|---|
| >1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A | Back alignment and structure |
|---|
| >4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... | Back alignment and structure |
|---|
| >2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 782 | ||||
| d1x38a1 | 388 | c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-te | 9e-45 | |
| d1x38a2 | 214 | c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, | 9e-27 | |
| d1tr9a_ | 330 | c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio chol | 9e-15 |
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Score = 163 bits (413), Expect = 9e-45
Identities = 84/397 (21%), Positives = 159/397 (40%), Gaps = 54/397 (13%)
Query: 40 FCNSSLTYEDRAKNLVSLLTLKEKVQQLV---------------------NTATGIPRLG 78
+ +++ EDR +L+ +TL EK+ Q+ + +PR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 79 VPSYEWWGEALHGVSNVGPAVRF-------------NAMVPGATSFPAVILSAASFNASL 125
+ EW + + G + R V GAT FP + A+ + L
Sbjct: 65 ATAKEWQ-DMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYL 123
Query: 126 WLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYV 185
++G+ + E RA ++P + V RDPRWGR E+ ED +V
Sbjct: 124 VKRIGEATALEVRATGI-----QYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIP 178
Query: 186 RGLQEIGDSK----NSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQ 241
++ + + KV++C KH+ + + ++ L + +
Sbjct: 179 GLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVD---GINENNTIINREGLMNIHM 235
Query: 242 PPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQ--VY 299
P +K+ + +G S+VM SY+ NG+ A+ +L+ G ++D G+++SD + I
Sbjct: 236 PAYKNAMDKGV-STVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITT 294
Query: 300 DTAIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLM 359
Y+ + + ++ L+ + N VN + S +D A+ V
Sbjct: 295 PAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKF 354
Query: 360 RLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQ 396
+G F+ +P + P + +H+ LA +AAR+
Sbjct: 355 TMGLFE-NPYADP---AMAEQLGKQEHRDLAREAARK 387
|
| >d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 | Back information, alignment and structure |
|---|
| >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| d1x38a1 | 388 | Beta-D-glucan exohydrolase, N-terminal domain {Bar | 100.0 | |
| d1tr9a_ | 330 | Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: | 100.0 | |
| d1x38a2 | 214 | Beta-D-glucan exohydrolase, C-terminal domain {Bar | 100.0 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.48 | |
| d2q3za2 | 114 | Transglutaminase, two C-terminal domains {Human (H | 87.29 | |
| d2vzsa2 | 122 | Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato | 86.09 | |
| d1ejxb_ | 101 | Urease, beta-subunit {Klebsiella aerogenes [TaxId: | 85.71 | |
| d1ex0a2 | 112 | Transglutaminase, two C-terminal domains {Human (H | 82.59 | |
| d4ubpb_ | 122 | Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 | 82.16 | |
| d1vjja2 | 115 | Transglutaminase, two C-terminal domains {Human (H | 81.54 | |
| d1g0da2 | 112 | Transglutaminase, two C-terminal domains {Red sea | 81.47 |
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=7.5e-71 Score=611.67 Aligned_cols=332 Identities=28% Similarity=0.452 Sum_probs=280.1
Q ss_pred CC-CCCCCCCHHHHHHHHHhcCCHHHHHHHhhCC---------------------CCCC---------------------
Q 003980 38 FP-FCNSSLTYEDRAKNLVSLLTLKEKVQQLVNT---------------------ATGI--------------------- 74 (782)
Q Consensus 38 ~~-~~d~~~~~~~r~~~ll~~MTleEKv~ql~~~---------------------~~~~--------------------- 74 (782)
.| |+||++|+++||++||++||||||||||++. ...+
T Consensus 2 ~~~y~d~~~~~e~Rv~dLl~~MTleEKigQl~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~ 81 (388)
T d1x38a1 2 YVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVDGFQKAC 81 (388)
T ss_dssp CCGGGCTTSCHHHHHHHHHTTCCHHHHHHHTEEEEGGGCCHHHHHHTTCCEEEECTTCCSSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHCCCHHHHHhhhcccccccCCHHHHHhccccceeecCCcccCCCCCHHHHHHHHHHHHHHH
Confidence 35 9999999999999999999999999999642 0112
Q ss_pred --CCCCCCcccccccccccccccCCceeccCCCCCcccCchhhHHHhcCCHHHHHHHHHHHHHHHHhhhccCCCCcee-e
Q 003980 75 --PRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTY-W 151 (782)
Q Consensus 75 --~rlgip~~~~~~~~~~g~~~~g~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~~~~Gi~~-~ 151 (782)
+++|||.+ +..|..+|+... .+.|.||+++++|||||+++++++|+++|+|+|++ |+|+ |
T Consensus 82 ~~~~~giPll-i~~D~e~G~~~~----------~~~t~~p~~~~~aat~d~~l~~~~g~~~g~E~ra~------Gin~~~ 144 (388)
T d1x38a1 82 MSTRLGIPMI-YGIDAVHGQNNV----------YGATIFPHNVGLGATRDPYLVKRIGEATALEVRAT------GIQYAF 144 (388)
T ss_dssp HTSSSCCCCE-EEECCSSSSTTS----------TTCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHT------TCCEEC
T ss_pred HhccCCCCce-eecccccCcccc----------cccccchhhhhccccCCHHHHHHHHHHhhHHHHhc------CCcccc
Confidence 46678877 577777775321 24789999999999999999999999999999999 9998 9
Q ss_pred cccccccCCCCCCcccCCCCCChHHHHHHHHHHHHHHhhcc-----CCCCCCCCCceeeeeeccccccccCCCCCCcccc
Q 003980 152 SPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIG-----DSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFH 226 (782)
Q Consensus 152 aP~~dv~r~p~~gR~~esfgeDP~l~~~~a~a~v~GlQ~~~-----~g~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~ 226 (782)
||++||.|||+|||++|+|||||+|+++|+. +|.++|+.. .|.....+..+|+||+|||||||.+. .+++.
T Consensus 145 aPv~Dv~~~p~~gr~~et~geDp~l~~~~~~-~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~---~~~~~ 220 (388)
T d1x38a1 145 APCIAVCRDPRWGRCYESYSEDRRIVQSMTE-LIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTV---DGINE 220 (388)
T ss_dssp CCBCCCCSCTTSTTGGGSSCSSHHHHHHGGG-HHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCG---GGCTT
T ss_pred CCcccccccccccccccCccCCHHHHHHHHh-hhhhhhchhhhhhcccccccccccCcceeeeeeecCCccc---cCccc
Confidence 9999999999999999999999999999964 799988741 01111223457999999999998553 23444
Q ss_pred cccccCHHHHHhhcCHHHHHHHHcCCcceEEeeccccCCccccCCHHHHHHHhhhhcCcCcEEEcCchhhhhhhcccccc
Q 003980 227 FDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYT 306 (782)
Q Consensus 227 ~~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~Gf~G~VvSD~~~~~~~~~~~~~~ 306 (782)
.++.+++++|+|+||+||+.+|++|. .+|||+||.+||+|+|.|+++|+++||++|||+|+|||||++|+++... +.
T Consensus 221 ~~~~i~~~~l~~~~l~pf~~~i~~g~-~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~--~~ 297 (388)
T d1x38a1 221 NNTIINREGLMNIHMPAYKNAMDKGV-STVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTP--AG 297 (388)
T ss_dssp CEECCCHHHHHHHTSHHHHHHHHTTC-CEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSS--TT
T ss_pred cccchhHHHHHHHhhhhhHHHHhhcc-ccccccccccCCccccCCHHHHHHHHHhccCCCceeecchhhccccccc--cC
Confidence 56678999999999999999999885 5999999999999999999999999999999999999999999988643 33
Q ss_pred CChHHHHHHHHHcCCCccCCc----chhHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 003980 307 ATPEDAVALALNAGLNMNCGD----YLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVC 382 (782)
Q Consensus 307 ~~~~ea~~~al~AG~D~~~~~----~~~~~l~~av~~G~i~~~~ld~av~RiL~~k~~~Glf~~~p~~~~~~~~~~~~~~ 382 (782)
.+..++.+.+++||+||.|.+ .+.+.|.+||++|+|+++|||+||+|||++|+++|||| +|+..+. ....++
T Consensus 298 ~~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd-~p~~~~~---~~~~i~ 373 (388)
T d1x38a1 298 SDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFE-NPYADPA---MAEQLG 373 (388)
T ss_dssp TTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTT-CCSCCGG---GGGGTT
T ss_pred CcHHHHHHHHHhcCCCeecCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCC-CCCCChh---hhhhcC
Confidence 456788899999999999863 35578999999999999999999999999999999999 5542221 124578
Q ss_pred cHHHHHHHHHHHhhc
Q 003980 383 TDDHKSLALDAARQG 397 (782)
Q Consensus 383 ~~~h~~la~~~A~es 397 (782)
+++|+++|+++|+||
T Consensus 374 ~~~h~~~a~~aA~~S 388 (388)
T d1x38a1 374 KQEHRDLAREAARKS 388 (388)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999997
|
| >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
| >d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
| >d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
| >d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
| >d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} | Back information, alignment and structure |
|---|