Citrus Sinensis ID: 004028

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------78
MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQMNSTSCEQSPNLEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNVYIVQNEPVDVNSDADGSMSEGSSSSPASDIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRSRVCLDEHQSSRFLENSVNEMRLEFLSEKCSAATAQHGNLSNSQAGQGVEITLLGATSGRNLQCANDSSLVLKELLEPGVTAGSLLAYQSFGEPSSYYHLNGAASAREHDVETAEEYGYLAAGSNGFQQITELTPQVGSISFPSRDFGTEAMEPRNLHARGAGR
ccccccEEEcccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEccccccccEEEEccccEEEcccccccccccEEEcccccccccccHHHccccccEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEHHHHccccccccccHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccEEEEEccccccEEEEEEEccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccEEEEcccHcccHHHHHHHHHHHcccccccccHHHHHHEEEEEccccEEEEccccccccEEcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEccEccccEEEEEcccEEEEccccccccccEEEEEEHHHEEEEcHHHHHcccEEEEEEEEEEccccccccccccccHHEEEEEEEccccHHHHHHHHcccccEcEHHcccccccccccccccccccccccHHHHHHcccccccccEEEEHHHHHHccccccccHHHHHHHHHHHHHHccccccccEEEEEccccHHHcccccccccccHHHHHHHHHHHHHccccEEcccEEEEEEccccEEEEEEEEccccEcccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHcccccccccccccccccccccEEEcccccccHHcccccccccccccEEEEEcccccccccccccccccEHHHHcccccccccHHcccccccccccccccccccccHcccccccEEEEEcccccccEEEEcccccccccccccccccccHccccccccccccc
mkselgvfdfkeedelpeleagkflgkfknpnnddspALKRELLECVTKETIVQIegignvpcvnadavdcapscnvdcapscneqmcapmkiggeegndirapqmnstsceqspnlekdncgfesCISELASrdlctkgpllgesqlcsgnldppsnvyivqnepvdvnsdadgsmsegsssspasdiapngvslnghmsdqwvddsevddinmgvvvspdyvffrdkfclGYLVVFSctgikikdsnacgvqesftfekgiDDIVDIKFQWLQRFGSVEVKLHVILNDvaqddnacgtsgieelkfsfsdcnwsEQLEKITSLNAKYLALWsvdhdnpvdmdgvgqrryfpnfdepfedvvypegdsdavsiskrdidllqpdtfvndTIIDFYIKYLKNQIQAEEKhrfhffnsfffrkladldkdpssisdgKAAFLRVRKWTRKVdifgkdyifipvnfnLHWSLIVIchpgdvasfkvedlkrsekvpcilhmdsikgtHAGLKNLVQSYLCEEWKerhkdtsedvsskflnfrfiplelpqqensfdcGLFLLHYLELFLaeapvsfsplklkklssflnvdwfppgeaSLKRSLIQKLISELLRNRSrvcldehqssrfleNSVNEMRLEFLSEKCSAATAqhgnlsnsqagqgVEITLLgatsgrnlqcandSSLVLKELlepgvtagsllayqsfgepssyyhlngaasarehDVETAEEYgylaagsngfqqiteltpqvgsisfpsrdfgteameprnlhargagr
mkselgvfdfkeedelpeleagkflgkfknpnnddsPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQMNSTSCEQSPNLEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNVYIVQNEPVDVNSDADGSMsegsssspasdIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISkrdidllqpdtfVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRsrvcldehqssrflensVNEMRLEFLSEKCSAATAQHGnlsnsqagQGVEITLLGATSGRNLQCANDSSLVLKELLEPGVTAGSLLAYQSFGEPSSYYHLNGAASAREHDVETAEEYGYLAAGSNGFQQITELTPQVGSISFPsrdfgteameprnlhargagr
MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQMNSTSCEQSPNLEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNVYIVQNEPVDVNsdadgsmsegsssspasdIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKhrfhffnsfffrKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGlfllhylelflaeaPVsfsplklkklssflNVDWFPPGEASLKRSLIQKLISELLRNRSRVCLDEHQSSRFLENSVNEMRLEFLSEKCSAATAQHGNLSNSQAGQGVEITLLGATSGRNLQCANDSSLVLKELLEPGVTAGSLLAYQSFGEPSSYYHLNGAASAREHDVETAEEYGYLAAGSNGFQQITELTPQVGSISFPSRDFGTEAMEPRNLHARGAGR
****************************************RELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCA********************************CGFESCISELASRDLCTKGPLLGESQLCS*******NVYIV****************************************QWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDK****ISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKER*******VSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRSRVCLD*****************************************GVEITLLGATSGRNLQCANDSSLVLKELLEPGVTAGSLLAYQSFGEPSSYYHLNGAAS****DVETAEEYGYLAAGSNGFQQITEL*******************************
***ELGVFDFKEE************************************************************************************************************************************************************************************************DDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFS*****************FTFEKGIDDIVDI************************************************************************************NFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISE*************************************************************************************************************************************************************************
MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQ***********LEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNVYIVQNEPVDVN*****************DIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW**********VSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRSRVCLDEHQSSRFLENSVNEMRLEFLSEKCSAATAQHGNLSNSQAGQGVEITLLGATSGRNLQCANDSSLVLKELLEPGVTAGSLLAYQSFGEPSSYYHLNGAASAREHDVETAEEYGYLAAGSNGFQQITELTPQVGSISFPSRDFGTEAMEPRNLHARGAGR
***ELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIG************************************************************P*********************************************SDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDD***GTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDH***********RRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRS*******************MRLEFLSEKCSAATAQH*NLSNSQAGQGVEITLLGATSGRNLQCANDSSLVLKELLEPGVTAGSLLAYQSFGEPSSYYHLNGAASAREHDVETAEEYGYLAAGSNGFQQITELTPQVGSISFPSRDFGT***************
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MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQMNSTSCEQSPNLEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNVYIVQNEPVDVNSDADGSMSEGSSSSPASDIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRSRVCLDEHQSSRFLENSVNEMRLEFLSEKCSAATAQHGNLSNSQAGQGVEITLLGATSGRNLQCANDSSLVLKELLEPGVTAGSLLAYQSFGEPSSYYHLNGAASAREHDVETAEEYGYLAAGSNGFQQITELTPQVGSISFPSRDFGTEAMEPRNLHARGAGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query778 2.2.26 [Sep-21-2011]
Q8L7S0 931 Probable ubiquitin-like-s yes no 0.967 0.808 0.496 0.0
Q0WKV8774 Probable ubiquitin-like-s no no 0.564 0.567 0.449 9e-98
Q8RWN0571 Ubiquitin-like-specific p no no 0.303 0.413 0.343 7e-36
Q2PS26584 Ubiquitin-like-specific p no no 0.303 0.404 0.338 6e-33
O13769638 Ubiquitin-like-specific p yes no 0.254 0.310 0.353 6e-32
Q8BUH81037 Sentrin-specific protease yes no 0.303 0.227 0.327 1e-31
Q9BQF61050 Sentrin-specific protease yes no 0.300 0.222 0.325 3e-31
A7MBJ21047 Sentrin-specific protease yes no 0.303 0.225 0.327 3e-31
D3ZF421037 Sentrin-specific protease yes no 0.303 0.227 0.324 1e-30
Q6P7W01132 Sentrin-specific protease no no 0.158 0.108 0.395 2e-20
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3 Back     alignment and function desciption
 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/798 (49%), Positives = 512/798 (64%), Gaps = 45/798 (5%)

Query: 1   MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGN 60
           MK    VFDFKEEDEL E  AGK L KF NP+  +SP L+R+ ++    E  V+ E +  
Sbjct: 1   MKKNFEVFDFKEEDELAESAAGKLLEKFTNPSPCNSPVLQRQRIQSFCNEKRVEEEEMEG 60

Query: 61  VPCVN-ADAVDCAP-SCNVDCAPSCNEQMCAPMKIGGEEGND----IRAPQMN------- 107
             C   A AV+     C  D       +    +   G E  D      A  +N       
Sbjct: 61  PSCAEPATAVESDDHQCEDDSTLVTEAKESRTILTFGLETTDHLEETDAEHVNQGLMLGL 120

Query: 108 -STSCEQSPNLEKDNCGF-----------ESCISELASRDLCTKG--PLLGE-SQLCSGN 152
            +    +  +++ DN G            E+ +        C  G      E S      
Sbjct: 121 KTEDLAKETDIDHDNHGLMFGLNSEDDIEETDVDHRVESFSCQLGGNSFYAETSSYSQRQ 180

Query: 153 LDPPSNVYIVQNEPVDVNSDADGSMSEGSSSSPASDIAPNGVSLNGHMSDQWVDDSEVDD 212
           L+ P +      E +D+ S  D S+S+ S+ S ASD   +       M++   +D E  D
Sbjct: 181 LNSPFSDSSSSEEQIDMMSAIDESLSDRSALSEASDSEDDE---EDWMTEHCFNDEEKID 237

Query: 213 INMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQ 272
           ++  V+++ +YV  +D  C   LV+FSC GIKIK   A   +  F+ E G++DIV I++ 
Sbjct: 238 LSTAVIMTSEYVILKDMHCAASLVIFSCNGIKIKSFLANNEEVPFSCEFGVEDIVSIQYN 297

Query: 273 WLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLAL 332
           W Q  G + +++ V+L D       C    +EELK +  + NW  + +KI SL+ KY A+
Sbjct: 298 WYQNVGLIILRIRVLLKD-----ENCH-EDMEELKIAVKEHNWPNKQQKINSLHVKYPAV 351

Query: 333 WSVDHDNPVDMDGVG---QRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVN 389
           W+ D ++ V++ G     Q+RYFP+FDEPFEDVVYP+GD DAVSI KRD++LLQP+TFVN
Sbjct: 352 WNTDLEDDVEVSGYNLNQQKRYFPSFDEPFEDVVYPKGDPDAVSICKRDVELLQPETFVN 411

Query: 390 DTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRK 449
           DTIIDFYI YLKNQIQ EEKHRFHFFNSFFFRKLADLDKDPSSI+DGKAAFLRVRKWTRK
Sbjct: 412 DTIIDFYINYLKNQIQTEEKHRFHFFNSFFFRKLADLDKDPSSIADGKAAFLRVRKWTRK 471

Query: 450 VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGL 509
           VD+FGKDYIF+PVN+NLHWSLIVICHPG+VA+    DL  S+KVPCILHMDSIKG+HAGL
Sbjct: 472 VDMFGKDYIFVPVNYNLHWSLIVICHPGEVANRTDLDLDDSKKVPCILHMDSIKGSHAGL 531

Query: 510 KNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAE 569
           KNLVQ+YLCEEWKERHK+TS+D+SS+F+N RF+ LELPQQENSFDCGLFLLHYLELFLAE
Sbjct: 532 KNLVQTYLCEEWKERHKETSDDISSRFMNLRFVSLELPQQENSFDCGLFLLHYLELFLAE 591

Query: 570 APVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRSRVCLDEHQSSRFLE 629
           AP++FSP K+   S+FL ++WFPP EASLKR+LIQKLI ELL NRSR   +E   S    
Sbjct: 592 APLNFSPFKIYNASNFLYLNWFPPAEASLKRTLIQKLIFELLENRSREVSNEQNQSCESP 651

Query: 630 NSVN-EMRLEFLSEKCSAATAQHGNLSNSQAGQGVEITLLGATSGRNLQCANDSSLVLKE 688
            +VN +M +E LSE+CS     +G+++ +Q  QG+E+TLL  +S R++Q ANDS +VL++
Sbjct: 652 VAVNDDMGIEVLSERCSPLIDCNGDMTQTQDDQGIEMTLLERSSMRHIQAANDSGMVLRD 711

Query: 689 LLEPGV-TAGSLLA--YQSFGEPSSYYHLNGAASAREH-DVETAEEYGYLAAGSNGFQQI 744
           L + G    GSLL    Q F +PSS+YHL+  +SARE  D+ET E++  L AG   FQ I
Sbjct: 712 LFDSGSNNTGSLLEQLQQPFEDPSSFYHLSNDSSAREQVDMETGEQFMCLNAGEGNFQCI 771

Query: 745 TELTPQVGSISFPSRDFG 762
           TE T    S SF S + G
Sbjct: 772 TETTSPRASNSFSSWNLG 789
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2 Back     alignment and function description
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana GN=ULP1C PE=1 SV=1 Back     alignment and function description
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1 Back     alignment and function description
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2 Back     alignment and function description
>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus GN=Senp7 PE=2 SV=1 Back     alignment and function description
>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4 Back     alignment and function description
>sp|A7MBJ2|SENP7_BOVIN Sentrin-specific protease 7 OS=Bos taurus GN=SENP7 PE=2 SV=1 Back     alignment and function description
>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1 Back     alignment and function description
>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query778
224063319 1041 predicted protein [Populus trichocarpa] 0.961 0.718 0.566 0.0
255545960 1042 sentrin/sumo-specific protease, putative 0.956 0.714 0.557 0.0
449470062 915 PREDICTED: probable ubiquitin-like-speci 0.943 0.802 0.521 0.0
449508962 917 PREDICTED: LOW QUALITY PROTEIN: probable 0.943 0.800 0.521 0.0
334182427 931 putative ubiquitin-like-specific proteas 0.967 0.808 0.496 0.0
334182425 963 putative ubiquitin-like-specific proteas 0.971 0.785 0.483 0.0
356518421 938 PREDICTED: probable ubiquitin-like-speci 0.912 0.756 0.485 1e-174
297849278 970 Ulp1 protease family protein [Arabidopsi 0.762 0.611 0.544 1e-174
357465275 1043 Sentrin-specific protease [Medicago trun 0.753 0.561 0.532 1e-167
357465273 1046 Sentrin-specific protease [Medicago trun 0.753 0.560 0.530 1e-166
>gi|224063319|ref|XP_002301094.1| predicted protein [Populus trichocarpa] gi|222842820|gb|EEE80367.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/778 (56%), Positives = 531/778 (68%), Gaps = 30/778 (3%)

Query: 1   MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGN 60
           MK+ L VFDFKEE+E+ EL AGK LGKFKNP+ D+    + + LEC  +E  V  +  G+
Sbjct: 1   MKNGLEVFDFKEENEIAELAAGKVLGKFKNPSLDNPFFSEYQFLECFAQECDVPGKESGS 60

Query: 61  VPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIR--APQMNSTSCEQSPNLE 118
           + CV+ADA+ C      D A +C +       +  EEGN      P + S S +Q     
Sbjct: 61  LVCVDADAIGC------DNADTCVQPGTVRDDLITEEGNSGSDAVPLLTSLSHDQGFCFR 114

Query: 119 KDNCGFESCISELASRDLCTKGPLLGESQLCSGNLD-PPSNVYIVQNEPVDVNSDADGSM 177
            D+   +   SE      C + PL GESQL  G+ D PPS+     +E  D   D D  M
Sbjct: 115 VDDFESKRLFSEDERIISCHEAPLPGESQLNRGHRDSPPSS-----SEADDGQLDVDDHM 169

Query: 178 SEGSSSSPASDIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVV 237
            + S SSP  DI    V LNG         +EV  IN+ V    DYV +R K C G ++ 
Sbjct: 170 EDCSPSSPTPDITEASVILNGPTPTNCFSYAEVGGINLLV----DYVVYRGKHCSGCVMT 225

Query: 238 FSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNA 297
           FS  G+KI  + A G + +F FE GI+DIV I+ Q LQRFG+V +KL+++  D  Q D  
Sbjct: 226 FSYGGVKINGATAHGDEGTFGFEAGIEDIVSIESQNLQRFGTVTIKLNILSKDAVQADTT 285

Query: 298 CGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDG----VGQRRYFP 353
            G SG+EEL+ +  + NWS + E+I+SLN KY AL SV HD    MDG    + QRRYFP
Sbjct: 286 HGMSGVEELEVAVVEPNWSRKWEEISSLNLKYSALLSVIHDMDSAMDGGVDLLQQRRYFP 345

Query: 354 NFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFH 413
           +FD  FEDV+YP+GDSDAVSISKRD+DLLQP+TF+NDTIIDFYIKYLKNQI  EEKHR+H
Sbjct: 346 SFDVEFEDVIYPKGDSDAVSISKRDVDLLQPETFINDTIIDFYIKYLKNQIPPEEKHRYH 405

Query: 414 FFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVI 473
           FFNSFFFRKLADLDKDPSS+ DG+AAFLRV KWTRKVDIFGKDYIFIPVNFNLHWSL+VI
Sbjct: 406 FFNSFFFRKLADLDKDPSSVKDGRAAFLRVHKWTRKVDIFGKDYIFIPVNFNLHWSLLVI 465

Query: 474 CHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVS 533
           CHPG+VA  K ED  +S  VPCILH+DSIKGTHAGLKNLVQSYL EEWK R KDTSED+S
Sbjct: 466 CHPGEVAGVKDEDTSKSVIVPCILHLDSIKGTHAGLKNLVQSYLWEEWKVRQKDTSEDMS 525

Query: 534 SKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPP 593
           SKFLN RF+PLELPQQENSFDCGLFLLHYLELFL EAPV+FSP ++ + + FLN DWFPP
Sbjct: 526 SKFLNLRFVPLELPQQENSFDCGLFLLHYLELFLVEAPVNFSPFRINEFNKFLNGDWFPP 585

Query: 594 GEASLKRSLIQKLISELLRNRSRV-----CLDEHQSSRFLENSVNEMRLEFLSEKCSAAT 648
            EASLKR+LIQ+LISELL+NRSR      C +E QS  F E +  E  L  +SE+C+ A 
Sbjct: 586 AEASLKRTLIQRLISELLQNRSREVSSGGCSNEPQSD-FSEMNGKESGLGLVSERCTPAG 644

Query: 649 AQHGNLSNSQAGQGVEITLLGATSGRNLQCANDSSLVLKELLEPGVTAGSLLAY-QSFGE 707
           A H NLS+S  GQG+EITLL A+S RN  C +DS LVL+E  EPGV AGSLL +  SF +
Sbjct: 645 ACHVNLSSSDPGQGIEITLLEASSVRNSHCVDDSGLVLREFFEPGVAAGSLLTHCPSFDQ 704

Query: 708 PSSYYHLNGAASAREH-DVETAEEYGYLAAGSNGFQQITELTPQVGSISFPSRDFGTE 764
            SSYYHLN   S  E  D ET E++ Y ++G   FQQI  + PQ GSIS   R FG +
Sbjct: 705 SSSYYHLNDTMSQIEQDDTETGEQFVYFSSGEAVFQQIAGIPPQDGSISCSFRGFGAD 762

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255545960|ref|XP_002514040.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223547126|gb|EEF48623.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449470062|ref|XP_004152737.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449508962|ref|XP_004163455.1| PREDICTED: LOW QUALITY PROTEIN: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334182427|ref|NP_001184951.1| putative ubiquitin-like-specific protease 2B [Arabidopsis thaliana] gi|357529069|sp|Q8L7S0.3|ULP2B_ARATH RecName: Full=Probable ubiquitin-like-specific protease 2B gi|215400502|gb|ACJ66287.1| EL5 SUMO protease [Arabidopsis thaliana] gi|332190365|gb|AEE28486.1| putative ubiquitin-like-specific protease 2B [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182425|ref|NP_172444.3| putative ubiquitin-like-specific protease 2B [Arabidopsis thaliana] gi|332190364|gb|AEE28485.1| putative ubiquitin-like-specific protease 2B [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356518421|ref|XP_003527877.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Glycine max] Back     alignment and taxonomy information
>gi|297849278|ref|XP_002892520.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297338362|gb|EFH68779.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357465275|ref|XP_003602919.1| Sentrin-specific protease [Medicago truncatula] gi|355491967|gb|AES73170.1| Sentrin-specific protease [Medicago truncatula] Back     alignment and taxonomy information
>gi|357465273|ref|XP_003602918.1| Sentrin-specific protease [Medicago truncatula] gi|355491966|gb|AES73169.1| Sentrin-specific protease [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query778
DICTYBASE|DDB_G0293508 1035 DDB_G0293508 [Dictyostelium di 0.236 0.177 0.348 4.6e-21
TAIR|locus:2194574571 OTS2 "OVERLY TOLERANT TO SALT 0.334 0.455 0.282 5e-21
TAIR|locus:2195598584 ULP1D "UB-like protease 1D" [A 0.302 0.402 0.299 2.2e-19
FB|FBgn0030420681 CG12717 [Drosophila melanogast 0.281 0.321 0.329 3.5e-19
DICTYBASE|DDB_G0289557778 DDB_G0289557 "peptidase C48 fa 0.272 0.272 0.302 4.6e-19
UNIPROTKB|F1PKE91145 SENP6 "Uncharacterized protein 0.226 0.153 0.313 5.8e-19
MGI|MGI:19220751132 Senp6 "SUMO/sentrin specific p 0.271 0.186 0.300 6.9e-19
UNIPROTKB|F1N1L71164 SENP6 "Uncharacterized protein 0.158 0.105 0.353 1.3e-18
ZFIN|ZDB-GENE-080204-251035 senp6a "SUMO1/sentrin specific 0.169 0.127 0.364 1.3e-18
RGD|13045651116 Senp6 "SUMO1/sentrin specific 0.226 0.157 0.304 1.8e-18
DICTYBASE|DDB_G0293508 DDB_G0293508 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 296 (109.3 bits), Expect = 4.6e-21, Sum P(3) = 4.6e-21
 Identities = 70/201 (34%), Positives = 108/201 (53%)

Query:   362 VVYPEGDSD----AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXX 417
             +VYPE   +     V I + DI  L+P  F+ND+II+FY  Y+K+++  EE+        
Sbjct:   426 MVYPETQENNKMSQVKIIRNDIKRLEPGEFLNDSIIEFYSMYIKDKVLTEEQRKKYFFFN 485

Query:   418 XXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPG 477
                 KL   ++D  ++     A+  V+KWT K D+F KD+IF+P+N+  HWSL++IC+PG
Sbjct:   486 SFFYKLFT-NEDNENL-----AYEDVKKWTGKEDLFSKDFIFVPINYAAHWSLMIICYPG 539

Query:   478 DVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFL 537
                + KV  +   EK PC++++DS+        N ++ YL  EWK +          +F 
Sbjct:   540 ---ADKV--VGEYEKSPCMIYLDSLFKRPGQFANKLRKYLTLEWKNKKAVDGVTPLREFN 594

Query:   538 --NFRFIPLELPQQENSFDCG 556
               NF +    LP Q N  DCG
Sbjct:   595 QDNFPYHISHLPLQNNGSDCG 615
GO:0008234 "cysteine-type peptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2194574 OTS2 "OVERLY TOLERANT TO SALT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195598 ULP1D "UB-like protease 1D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0030420 CG12717 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289557 DDB_G0289557 "peptidase C48 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKE9 SENP6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1922075 Senp6 "SUMO/sentrin specific peptidase 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1L7 SENP6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-25 senp6a "SUMO1/sentrin specific peptidase 6a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1304565 Senp6 "SUMO1/sentrin specific peptidase 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L7S0ULP2B_ARATH3, ., 4, ., 2, 2, ., 6, 80.49620.96780.8088yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00020973
hypothetical protein (1041 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query778
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 2e-37
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 1e-28
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 4e-20
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  147 bits (373), Expect = 2e-37
 Identities = 70/218 (32%), Positives = 106/218 (48%), Gaps = 37/218 (16%)

Query: 359 FEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEK-HRFHFFNS 417
            +   YP  D  ++ I+ +D   L+   ++NDTIIDFY+K L    +   K  + H FN+
Sbjct: 368 LKSSCYPFNDRSSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKISKNTSKREQVHLFNT 427

Query: 418 FFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPG 477
           FF+ KL            G +    VR+WT+K DIF K YIFIP+N + HW L +I +P 
Sbjct: 428 FFYTKL---------SRRGYSG---VRRWTKKTDIFSKKYIFIPINISYHWFLAIIDNP- 474

Query: 478 DVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFL 537
                             IL+ DS+  TH  +   ++SYL +E+K +H    +       
Sbjct: 475 ---------------KKNILYFDSLANTHDPVLEFLRSYLLDEYKIQHDKDPQ------- 512

Query: 538 NFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFS 575
             +    ++PQQ N  DCG+F+  ++  FL   P  FS
Sbjct: 513 -IKMKHCKVPQQRNGSDCGVFVCMFIRYFLENPPEQFS 549

Length = 578
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 778
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 99.96
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.94
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.83
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 97.77
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 96.19
PRK14848317 deubiquitinase SseL; Provisional 93.89
PRK11836403 deubiquitinase; Provisional 93.57
PF03421177 YopJ: YopJ Serine/Threonine acetyltransferase; Int 80.29
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-41  Score=375.07  Aligned_cols=181  Identities=32%  Similarity=0.670  Sum_probs=157.9

Q ss_pred             ceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhccc-ccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhcc
Q 004028          371 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAE-EKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRK  449 (778)
Q Consensus       371 ~vsLt~~DL~~L~p~~WLND~IIdFYL~yL~~~~~~~-~~~rv~~FnSfFy~kL~~~~k~Pssl~d~~~~y~~VkrWtkk  449 (778)
                      ++.||..||.||.+++||||+||||||++|.++.... ..+++|+||||||++|..            .+|+.|+|||++
T Consensus       317 ~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~yp~~h~FnTFFy~kL~~------------~gy~~VkRWTk~  384 (511)
T KOG0778|consen  317 NIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSKYPKVHAFNTFFYTKLVG------------RGYAGVKRWTKK  384 (511)
T ss_pred             cccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCCCceEEEEechhhhhhhh------------cchHHHHhHhhc
Confidence            5899999999999999999999999999999986553 278899999999999985            589999999999


Q ss_pred             cCCCCCCeEEEEeeccCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCc
Q 004028          450 VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTS  529 (778)
Q Consensus       450 vdLFeKD~IfIPIN~nsHWsLlVIc~P~~v~~~~d~d~~~s~k~p~Il~fDSL~~~~~~l~~~L~~YL~~E~k~k~k~~~  529 (778)
                      +|||++|+||||||.+.||+|+||+..                .++|.|||||++...+++.+|..||.+|++.|.+...
T Consensus       385 v~if~~d~i~vPIH~~vHW~l~vid~r----------------~k~i~y~DS~~~~~nr~~~aL~~Yl~~E~~~k~~~~~  448 (511)
T KOG0778|consen  385 VDIFDKDIIFVPIHLGVHWCLAVIDLR----------------EKTIEYYDSLGGGPNRICDALAKYLQDESRDKSKKDF  448 (511)
T ss_pred             cCccccceeEeeeecCceEEEEEEEcc----------------cceEEEeeccCCCCcchHHHHHHHHHHHHhhhhcCCC
Confidence            999999999999999999999999863                3699999999977666669999999999998876543


Q ss_pred             ccccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhc
Q 004028          530 EDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLS  583 (778)
Q Consensus       530 ~D~s~~f~n~~~v~~~VPQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~dI~~~r  583 (778)
                       |++ .|.. . ...++|||.||+|||+|+|+|++++..+.|+.|+|.+|+.||
T Consensus       449 -d~s-~w~~-~-~~~~iP~Q~Ng~DCG~f~c~~~~~~s~~~p~~ftq~dmp~fR  498 (511)
T KOG0778|consen  449 -DVS-GWTI-E-FVQNIPQQRNGSDCGMFVCKYADYISRDVPLTFTQQDMPYFR  498 (511)
T ss_pred             -Ccc-chhh-h-hhhccccccCCCccceEEeeechhhccCCCcccChhhhHHHH
Confidence             333 3432 1 234899999999999999999999999999999999887653

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query778
3eay_A323 Crystal Structure Of The Human Senp7 Catalytic Doma 2e-18
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 2e-09
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 2e-09
2iyc_A226 Senp1 Native Structure Length = 226 3e-09
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 4e-09
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 1e-08
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 3e-08
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 5e-08
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 4e-07
1euv_A221 X-Ray Structure Of The C-Terminal Ulp1 Protease Dom 4e-07
2hkp_A221 Sumo Protease Ulp1 With The Catalytic Cysteine Oxid 7e-06
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure 
Iteration: 1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 112/250 (44%), Gaps = 60/250 (24%)
Query: 362 VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXX 420
           +VYP   +   + ++  D++ L+   F+ND IIDFY+KYL  +  ++E            
Sbjct: 22  IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFF 81
Query: 421 XKLA-----DLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICH 475
            K       +L +D  ++S  +    RVR WTR ++IF KDYIF+PVN + HW L VIC 
Sbjct: 82  YKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICF 141
Query: 476 P------------------------------------GDVASFKVEDLKRSE-------- 491
           P                                        S   ED + +E        
Sbjct: 142 PWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKK 201
Query: 492 --KVPCILHMDSIKGTHAGLKNLVQS---YLCEEWKERHKDTSEDVSSKFLNFRFIPLEL 546
             K PCIL +DS+K   A ++N VQ+   YL  EW+ + K   +   +  ++    P ++
Sbjct: 202 MCKRPCILILDSLKA--ASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVD--LCP-KV 256
Query: 547 PQQENSFDCG 556
           P+Q+NS DCG
Sbjct: 257 PKQDNSSDCG 266
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221 Back     alignment and structure
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query778
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 2e-48
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 8e-43
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 3e-39
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 3e-38
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 7e-38
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 3e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
 Score =  173 bits (438), Expect = 2e-48
 Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 63/314 (20%)

Query: 356 DEPFEDVVYP-EGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEK-HRFH 413
               + +VYP       + ++  D++ L+   F+ND IIDFY+KYL  +  ++E   R H
Sbjct: 16  GLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSH 75

Query: 414 FFNSFFFRKL----ADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWS 469
            F+SFF++ L     +L +D  ++S  +    RVR WTR ++IF KDYIF+PVN + HW 
Sbjct: 76  IFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWY 135

Query: 470 LIVICHPGDVASFKVEDLKRSE-------------------------------------- 491
           L VIC P    +   +  +                                         
Sbjct: 136 LAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESN 195

Query: 492 --------KVPCILHMDSIKGTH-AGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFI 542
                   K PCIL +DS+K          ++ YL  EW+ + K   +   +   N   +
Sbjct: 196 MSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKT---NMVDL 252

Query: 543 PLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSL 602
             ++P+Q+NS DCG++LL Y+E F  +  V+F               WFP      KR  
Sbjct: 253 CPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFE-------LPIHLEKWFPRHVIKTKRED 305

Query: 603 IQKLISELLRNRSR 616
           I++LI +L   + +
Sbjct: 306 IRELILKLHLQQQK 319
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query778
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 100.0
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 84.35
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.4e-49  Score=422.41  Aligned_cols=246  Identities=35%  Similarity=0.617  Sum_probs=196.5

Q ss_pred             ceeeccCC-CCCceEEehhhhhccCCCCCcCHHHHHHHHHHHHH-hhcccccCcEEEechHHHHHhhccCCC----CCCc
Q 004028          360 EDVVYPEG-DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKN-QIQAEEKHRFHFFNSFFFRKLADLDKD----PSSI  433 (778)
Q Consensus       360 ~~vvYp~~-d~~~vsLt~~DL~~L~p~~WLND~IIdFYL~yL~~-~~~~~~~~rv~~FnSfFy~kL~~~~k~----Pssl  433 (778)
                      ..++||+. +.+++.|+.+||.||.+++||||+|||||++||.. +..++...++|+||||||.+|....+.    ...+
T Consensus        20 ~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~   99 (323)
T 3eay_A           20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNL   99 (323)
T ss_dssp             EEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCS
T ss_pred             eeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccc
Confidence            35789985 67899999999999999999999999999999964 444445678999999999999864321    1112


Q ss_pred             chhhHHHHHHhhhhcccCCCCCCeEEEEeeccCceEEEEEecCCCccccc-----------------------cc-----
Q 004028          434 SDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFK-----------------------VE-----  485 (778)
Q Consensus       434 ~d~~~~y~~VkrWtkkvdLFeKD~IfIPIN~nsHWsLlVIc~P~~v~~~~-----------------------d~-----  485 (778)
                      +....+|.+|+|||+++|||+|||||||||.+.||+|+|||+|++.....                       |.     
T Consensus       100 s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  179 (323)
T 3eay_A          100 SMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTT  179 (323)
T ss_dssp             CHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC-----------------------------
T ss_pred             hhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccccc
Confidence            23356899999999999999999999999999999999999997521100                       00     


Q ss_pred             ------------------ccccCCCCCeEEEEcCCCCc-chhHHHHHHHHHHHHHHHhccCCcccccccccceeeecCCC
Q 004028          486 ------------------DLKRSEKVPCILHMDSIKGT-HAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEL  546 (778)
Q Consensus       486 ------------------d~~~s~k~p~Il~fDSL~~~-~~~l~~~L~~YL~~E~k~k~k~~~~D~s~~f~n~~~v~~~V  546 (778)
                                        ......|+|||+|||||++. +..+...|+.||..||+.|++.. .++.  ...+....+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~-~~f~--~~~~~~~~~~~  256 (323)
T 3eay_A          180 STLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH-RQFS--KTNMVDLCPKV  256 (323)
T ss_dssp             --------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC-CCCC--TTTSCEECCBC
T ss_pred             cccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC-cCCC--HhHceeccCCC
Confidence                              01123578999999999986 56789999999999999886543 2332  12345556789


Q ss_pred             CCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHhcc
Q 004028          547 PQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRS  615 (778)
Q Consensus       547 PQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~dI~~~r~~l~~~WF~p~eis~kR~~I~~LI~eL~~~~s  615 (778)
                      |||.|++|||||||+||++|+.++|.+|++. +      ...+||++.+|+.||+.|++||++|..+.+
T Consensus       257 P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~-~------~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~  318 (323)
T 3eay_A          257 PKQDNSSDCGVYLLQYVESFFKDPIVNFELP-I------HLEKWFPRHVIKTKREDIRELILKLHLQQQ  318 (323)
T ss_dssp             CCCCSTTCHHHHHHHHHHHHHHSCCCCCCSS-C------BCTTSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCcHHHHHHHHHHHHHhCCccccccc-c------ccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999988742 2      126899999999999999999999998764
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 778
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 1e-40
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 3e-39
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 6e-39
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 1e-32
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 1e-40
 Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 30/211 (14%)

Query: 372 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPS 431
           + I++ DI  L+   ++ND +I+FY+  L  + + +     H F++FF+ KL        
Sbjct: 32  LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQ-- 89

Query: 432 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSE 491
                      V++WT+ V++F ++ I +P++  +HWSL+VI                  
Sbjct: 90  ----------AVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRK-------------- 125

Query: 492 KVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQEN 551
              C+ ++DS+      +  ++  YL +E K +    S+    ++ +    P E+PQQ N
Sbjct: 126 --KCLKYLDSMGQKGHRICEILLQYLQDESKTKRN--SDLNLLEWTHHSMKPHEIPQQLN 181

Query: 552 SFDCGLFLLHYLELFLAEAPVSFSPLKLKKL 582
             DCG+F   Y +    + P++F+  ++   
Sbjct: 182 GSDCGMFTCKYADYISRDKPITFTQHQMPLF 212
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query778
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 100.0
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 100.0
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 100.0
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 86.46
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=295.79  Aligned_cols=180  Identities=27%  Similarity=0.616  Sum_probs=153.8

Q ss_pred             ceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhcccccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhccc
Q 004028          371 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKV  450 (778)
Q Consensus       371 ~vsLt~~DL~~L~p~~WLND~IIdFYL~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~Pssl~d~~~~y~~VkrWtkkv  450 (778)
                      ++.|+++|+.+|.+++||||+|||||++||.++..+....++++|+|+|+.+|..            ..+..+++|+++.
T Consensus        31 ~~~i~~~Dl~~L~~~~WLnD~iI~~y~~~l~~~~~~~~~~~~~~~~~~f~~~l~~------------~~~~~~~~~~~~~   98 (226)
T d1th0a_          31 KLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKS------------GGYQAVKRWTKGV   98 (226)
T ss_dssp             TEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHH------------HTGGGTGGGGTTC
T ss_pred             CceeEHHHHHhcCCCcccccHHHHHHHHHHHHhhhhccCCceEEecHHHHHHHhh------------ccHHHHHHHHhcc
Confidence            6899999999999999999999999999999887766677899999999999974            4577899999999


Q ss_pred             CCCCCCeEEEEeeccCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcc
Q 004028          451 DIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSE  530 (778)
Q Consensus       451 dLFeKD~IfIPIN~nsHWsLlVIc~P~~v~~~~d~d~~~s~k~p~Il~fDSL~~~~~~l~~~L~~YL~~E~k~k~k~~~~  530 (778)
                      +++++++||||||.+.||+|+||+.+.                ++|++||||++.+......++.||..+++.+..... 
T Consensus        99 ~l~~~~~i~iPin~~~HW~L~vi~~~~----------------~~i~~~DSl~~~~~~~~~~i~~~l~~~~~~~~~~~~-  161 (226)
T d1th0a_          99 NLFEQEIILVPIHRKVHWSLVVIDLRK----------------KCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDL-  161 (226)
T ss_dssp             CGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCC-
T ss_pred             CcccCCEEEEeEEcCCceEEEEEEecc----------------ceEEEeccccCCChHHHHHHHHHHHHHHHHhhCCCc-
Confidence            999999999999999999999998753                589999999998888888889999999887654332 


Q ss_pred             cccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhh
Q 004028          531 DVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLK  580 (778)
Q Consensus       531 D~s~~f~n~~~v~~~VPQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~dI~  580 (778)
                      ... .|....+.+..+|||.|++|||||||+||++++.+.+..|+|.+|+
T Consensus       162 ~~~-~~~~~~~~~~~~pqQ~N~~DCGvfvl~~~~~~~~~~~~~~tq~di~  210 (226)
T d1th0a_         162 NLL-EWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMP  210 (226)
T ss_dssp             CGG-GCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHH
T ss_pred             Ccc-cceeeeeccCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence            121 2333345567899999999999999999999999887776655543
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure