Citrus Sinensis ID: 004043

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------
MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLPPHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
ccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHccccHHHHcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHcccccHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHccccccHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcc
mqaadqtvislrpgggggprgtrlfthrfdssstpssdsqtlpphggvasafkmgdlrfegheRVRYTREQLLQLKEVAQLTEDILKIKQEIESefdgegqswggraennnLQSQFQARYLEAdnrdwrtrsttsgqEKSLEANQEKMefgahegqlnsQFASAQIstnqgagpapalikaevpwsarrgnlsekDRVLKTVKGILNkltpekfdvlkgqlidsgittpDILKGVIELIFDKavleptfcPMYALLCSdlneklppfpsdepggkditfKRILLNHCQEAFEGADNTRAEIRQmtapeqemERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLendgktcpaeeNVEAICQFFNTIgkqldenpksrrvnDVYFSRLKelttnsqlvprlRFMIHDVldlrannwvprreEMKAKTITEIHSEAEknlglrpgatammrngrtgatggmgpggfpiarpgtggmmpgmpgtqkmpgmpgfdtdnwevprsrtmprgdskspsqfpgrvqspligkspsinskflpqgsggiisgktsallqgsptpsarpsgiasgvepltqytkpvapaasvvaspekpsapvtklNLADLRKKTVSLLEEYFSIRILDEALQCVEelraptyhpEVVKEAIALALekippcvePVIQLLEFLLNknvlttrdigTGCLLYGSLlddigidlpkapnnfgEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKsiqsspagQEVLAVQGAEVQACESLLT
mqaadqtvislrpgggggpRGTRLFTHRFDssstpssdsqtlppHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWrtrsttsgqeksLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVpwsarrgnlsekdrvlKTVKGilnkltpekfdvlkgqlidsgitTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAfegadntraEIRQMtapeqemermDQERLVKLRTLGNIRLIGellkqkmvpEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTigkqldenpksrrVNDVYFSRLkelttnsqlvprlrFMIHDvldlrannwvprreEMKAKTITEihseaeknlglrpgATAMMRNGRtgatggmgpgGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRtmprgdskspsqfpGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAAsvvaspekpsapvtklnladLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
MQAADQTVISLrpgggggprgTRLFTHRFdssstpssdsQTLPPHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAmmrngrtgatggmgpggFPIARpgtggmmpgmpgtqkmpgmpgFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTkpvapaasvvaspekpsapvTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
***************************************************FKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIK*********************************************************************************************VPW**********DRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE*************DITFKRILLNHCQEAF***************************LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLD*****RRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPR**********************************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAM****************************
******************************************************************YTREQLLQLKEVA*************************************************************************************************************************TVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPP*********DITFKRILLNHCQEAFEGAD**********************RLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTT**QLVPRLRFMIHDVLDLRANNW***********************************************************************************************************************************************RPSGIASG********************************LADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMK**************QGAEVQACESLL*
MQAADQTVISLRPGGGGGPRGTRLFTHR***************PHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIES********WGGRAENNNLQSQFQARYLEADNRD***************ANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRS*****************VQSPLIGKSPSINSKFLPQGSGGIISGKTSAL************GIASGVEPLTQYTKPVA**************PVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
*****QTVISL*PGG*********************************************GHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWG****************************************************************************************SEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMT**EQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNL**************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAV***EVQAC*SLL*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLPPHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query777 2.2.26 [Sep-21-2011]
Q93ZT6780 Eukaryotic translation in yes no 0.980 0.976 0.597 0.0
Q03387788 Eukaryotic translation in N/A no 0.951 0.937 0.599 0.0
Q84PB3793 Eukaryotic translation in yes no 0.915 0.896 0.609 0.0
Q41583787 Eukaryotic translation in N/A no 0.951 0.939 0.590 0.0
Q6K641780 Eukaryotic translation in no no 0.980 0.976 0.595 0.0
O82233747 Eukaryotic translation in no no 0.945 0.983 0.568 0.0
Q5Z5Q3711 Zinc finger CCCH domain-c no no 0.377 0.412 0.432 9e-62
B9FXV51792 Eukaryotic translation in no no 0.652 0.282 0.335 7e-57
G5CEW61488 Eukaryotic translation in N/A no 0.378 0.197 0.386 2e-50
Q5R7J9 907 Eukaryotic translation in yes no 0.679 0.582 0.294 2e-45
>sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1 Back     alignment and function desciption
 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/793 (59%), Positives = 594/793 (74%), Gaps = 31/793 (3%)

Query: 1   MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLP--PHGGVASA---FKMG 55
           MQ  DQTV+SLRPGGG G R     +     S    S S      PHGG  ++   FK G
Sbjct: 1   MQQGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFKGG 60

Query: 56  DLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSW--GGRAENNNLQ 113
           D RF+G ERV+YTREQLL+LKE  QL+++IL++++E  +E  GE  +W  G    +N + 
Sbjct: 61  DSRFDGRERVKYTREQLLELKETTQLSDEILRVQRETAAELFGEEGTWARGESVVSNLVP 120

Query: 114 SQFQARYLEADNRDWRTRSTT---SGQEKSLEANQEKMEFGAHEG-------QLNSQFAS 163
            Q  +R+ E D+RDWR+RST    SG+E+S +  +E  +    E        Q NSQF+ 
Sbjct: 121 VQSASRFSEPDSRDWRSRSTQPPPSGEERSWDNLREAKDSRYVEASQYNRQDQPNSQFSR 180

Query: 164 AQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLID 223
           A IS+NQG GPAP L+KAEVPWSARRGNLSE DRVLKTVKGILNKLTPEK+D+LKGQLI+
Sbjct: 181 ANISSNQGGGPAPVLVKAEVPWSARRGNLSENDRVLKTVKGILNKLTPEKYDLLKGQLIE 240

Query: 224 SGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRIL 283
           SGIT+ DILKGVI LIFDKAVLEPTFCPMYA LCSD+N++LP FP  EPG K+ITFKR+L
Sbjct: 241 SGITSADILKGVITLIFDKAVLEPTFCPMYAKLCSDINDQLPTFPPAEPGDKEITFKRVL 300

Query: 284 LNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEK 343
           LN CQEAFEGA   R E+RQM+AP+QE ER D+E+L+KL+TLGNIRLIGELLKQKMVPEK
Sbjct: 301 LNICQEAFEGASQLREELRQMSAPDQEAERNDKEKLLKLKTLGNIRLIGELLKQKMVPEK 360

Query: 344 IVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTN 403
           IVHHIVQELL  D K CPAEENVEAIC FF TIGKQLD N KS+R+NDVYF RL+ L+ N
Sbjct: 361 IVHHIVQELLGADEKVCPAEENVEAICHFFKTIGKQLDGNVKSKRINDVYFKRLQALSKN 420

Query: 404 SQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRT 463
            QL  RLRFM+ +++D+R+N WVPRREEMKA+TITEIH+EAEKNLGLRPGATA MR G  
Sbjct: 421 PQLELRLRFMVQNIIDMRSNGWVPRREEMKARTITEIHTEAEKNLGLRPGATANMRRGMV 480

Query: 464 GATGGMGPGG-FPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPS 522
            + G + PG  +P  RPG GG+MPGMPGT++MPGMPG D DNWEVPR+R+M R D     
Sbjct: 481 SSGGPVSPGPVYPGGRPGAGGLMPGMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDG---- 536

Query: 523 QFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQ 582
             PG + SP + KS S+N++ LPQGS GI+SGKTSALLQGS + S RP  +++      +
Sbjct: 537 --PGPLHSPAVSKSASMNTRLLPQGSSGIMSGKTSALLQGSGSVS-RPVTVSA-----ER 588

Query: 583 YTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAP 642
             + VAP  +V    EKP     KL+   L++KT SLLEEYF++R+L EALQCVEEL  P
Sbjct: 589 PAQSVAP-LTVPVPVEKPQPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEALQCVEELGLP 647

Query: 643 TYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGID 702
           +YHPE VKEAI+L+LEK PP VEP+  LLE+LL+K V+  +D+ TG LLYG++LDDIGID
Sbjct: 648 SYHPEFVKEAISLSLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGID 707

Query: 703 LPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVL 762
           LPKAPNNFGE+VGKL++A  +DF +++E++ K+ED+ F++ +  AA++ ++SS  G+ +L
Sbjct: 708 LPKAPNNFGEIVGKLILAGGVDFKLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLL 767

Query: 763 AVQGAEVQACESL 775
           A Q A+++AC +L
Sbjct: 768 ASQAADIEACRNL 780
Plays a role in the accumulation of some potyvirus during viral infection.
Arabidopsis thaliana (taxid: 3702)
>sp|Q03387|IF4G1_WHEAT Eukaryotic translation initiation factor isoform 4G-1 OS=Triticum aestivum PE=1 SV=2 Back     alignment and function description
>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2 Back     alignment and function description
>sp|Q41583|IF4G2_WHEAT Eukaryotic translation initiation factor isoform 4G-2 OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q6K641|IF4G2_ORYSJ Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. japonica GN=Os02g0611500 PE=2 SV=1 Back     alignment and function description
>sp|O82233|IF4G2_ARATH Eukaryotic translation initiation factor isoform 4G-2 OS=Arabidopsis thaliana GN=EIF(ISO)4G2 PE=1 SV=1 Back     alignment and function description
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1 Back     alignment and function description
>sp|B9FXV5|IF4G_ORYSJ Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2 Back     alignment and function description
>sp|G5CEW6|IF4G_WHEAT Eukaryotic translation initiation factor 4G OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query777
224143334750 predicted protein [Populus trichocarpa] 0.965 1.0 0.738 0.0
359484894795 PREDICTED: eukaryotic initiation factor 0.992 0.969 0.706 0.0
147833057794 hypothetical protein VITISV_013807 [Viti 0.990 0.969 0.708 0.0
359484892794 PREDICTED: eukaryotic initiation factor 0.990 0.969 0.706 0.0
359475890791 PREDICTED: eukaryotic initiation factor 0.993 0.975 0.729 0.0
224092613766 predicted protein [Populus trichocarpa] 0.978 0.992 0.737 0.0
356562555789 PREDICTED: eukaryotic initiation factor 0.988 0.973 0.682 0.0
356562557792 PREDICTED: eukaryotic initiation factor 0.989 0.970 0.68 0.0
356500679789 PREDICTED: eukaryotic initiation factor 0.987 0.972 0.682 0.0
224142359793 predicted protein [Populus trichocarpa] 0.985 0.965 0.673 0.0
>gi|224143334|ref|XP_002324920.1| predicted protein [Populus trichocarpa] gi|222866354|gb|EEF03485.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1107 bits (2862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/777 (73%), Positives = 641/777 (82%), Gaps = 27/777 (3%)

Query: 1   MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLPPHGGVASAFKMGDLRFE 60
           MQA   TVISLRPGGG    G   F   F   +T                    G+LRFE
Sbjct: 1   MQADQTTVISLRPGGGSN--GVFPFFQVFVLPAT--------------------GELRFE 38

Query: 61  GHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARY 120
            HER+RYTR+QLLQLKEV  + EDILKI+QEIESEF GE Q+W     + +LQ Q Q+RY
Sbjct: 39  DHERIRYTRDQLLQLKEVENVPEDILKIRQEIESEFVGEDQTWS--HADGSLQPQSQSRY 96

Query: 121 LEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIK 180
            E DNRDWR RS   G+++S EA +E  EF   + QLNSQFASAQI+ NQ  GPAPALIK
Sbjct: 97  SEPDNRDWRGRSAAFGEDRSREAIRENKEFYNRQDQLNSQFASAQITANQRVGPAPALIK 156

Query: 181 AEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIF 240
           AEVPWS RRGNLSE++RVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVI LIF
Sbjct: 157 AEVPWSVRRGNLSEEERVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVISLIF 216

Query: 241 DKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAE 300
           DKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGK+ITFKRILLN+CQEAFEGA N RAE
Sbjct: 217 DKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKEITFKRILLNNCQEAFEGAGNLRAE 276

Query: 301 IRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTC 360
           I ++TAPEQEMER D+ERLVKLRT+GN+RLIGELLKQKMVPEKIVHHIVQELL ND KTC
Sbjct: 277 ISKLTAPEQEMERRDKERLVKLRTMGNMRLIGELLKQKMVPEKIVHHIVQELLGNDSKTC 336

Query: 361 PAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDL 420
           PAEENVEAICQFFNTIGKQLDENPK+RRVNDVYFSRLKELTTN  L PR RFM+ DVLDL
Sbjct: 337 PAEENVEAICQFFNTIGKQLDENPKARRVNDVYFSRLKELTTNPHLAPRCRFMVRDVLDL 396

Query: 421 RANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPG 480
           RAN+WVPRREE+KAKTI+EIHSEAEKNLGLRPGATA+MRNGR  ATGG+GPGGFPI RPG
Sbjct: 397 RANSWVPRREEVKAKTISEIHSEAEKNLGLRPGATAVMRNGRN-ATGGVGPGGFPIGRPG 455

Query: 481 TGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSIN 540
           +GGMMPGMPG  KMPG+PG D DNWEVPRSR MPRG+S  P+   G V + LI KSP +N
Sbjct: 456 SGGMMPGMPGMMKMPGIPGLDADNWEVPRSRAMPRGNSFGPTHVAGHVPTSLINKSPPLN 515

Query: 541 SKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKP 600
           ++ LPQGSGG+I+GK S LLQGS  PS RP G A+  EP  Q  KPVAPA S + SP+KP
Sbjct: 516 ARLLPQGSGGVIAGKPSLLLQGSGAPS-RP-GFATRTEPAGQTPKPVAPAVSAIPSPQKP 573

Query: 601 SAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI 660
            AP T+ N  DLR+KT+SLLEEYFS+RILDEALQCVEEL+  ++HPEV KEAIALALEK 
Sbjct: 574 LAPTTRSNPDDLRRKTISLLEEYFSVRILDEALQCVEELKDTSFHPEVAKEAIALALEKS 633

Query: 661 PPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVA 720
           PPCVEPV++LLEFLL KNVLT RDIGTGCLLYGS LDDIGIDLPKAPNNFGE++G LVVA
Sbjct: 634 PPCVEPVVKLLEFLLTKNVLTARDIGTGCLLYGSSLDDIGIDLPKAPNNFGEILGSLVVA 693

Query: 721 KSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT 777
           + LDF V KEVLKKVED+ FR++IF++AM SI S+P+GQEVLA QG+ +QACESLL+
Sbjct: 694 QGLDFEVFKEVLKKVEDDRFRKAIFSSAMMSINSNPSGQEVLATQGSNIQACESLLS 750

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484894|ref|XP_003633181.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147833057|emb|CAN70546.1| hypothetical protein VITISV_013807 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484892|ref|XP_002277218.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475890|ref|XP_002285559.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224092613|ref|XP_002309681.1| predicted protein [Populus trichocarpa] gi|222855657|gb|EEE93204.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356562555|ref|XP_003549535.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356562557|ref|XP_003549536.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356500679|ref|XP_003519159.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Glycine max] Back     alignment and taxonomy information
>gi|224142359|ref|XP_002324526.1| predicted protein [Populus trichocarpa] gi|222865960|gb|EEF03091.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query777
TAIR|locus:2174353780 eIFiso4G1 "AT5G57870" [Arabido 0.976 0.973 0.559 1.9e-216
UNIPROTKB|Q1MSJ4793 eif(iso)4g "Putative eukaryoti 0.988 0.968 0.555 1.7e-208
UNIPROTKB|Q1MSJ3793 eif(iso)4g "Putative eukaryoti 0.988 0.968 0.553 4.6e-208
UNIPROTKB|Q1MSJ1793 eif(iso)4g "Putative eukaryoti 0.988 0.968 0.552 2e-207
UNIPROTKB|Q1MSJ0793 eif(iso)4g "Putative eukaryoti 0.988 0.968 0.551 5.2e-207
UNIPROTKB|Q1MSJ2790 eif(iso)4g "Putative eukaryoti 0.984 0.968 0.548 8.8e-205
TAIR|locus:2061370747 eIFiso4G2 "AT2G24050" [Arabido 0.774 0.805 0.592 5.6e-187
TAIR|locus:2131919263 AT4G30680 "AT4G30680" [Arabido 0.287 0.847 0.495 2.6e-54
TAIR|locus:20819271727 EIF4G "AT3G60240" [Arabidopsis 0.338 0.152 0.420 4.9e-51
UNIPROTKB|G3N2H3 1228 EIF4G3 "Uncharacterized protei 0.333 0.210 0.395 3.5e-48
TAIR|locus:2174353 eIFiso4G1 "AT5G57870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2091 (741.1 bits), Expect = 1.9e-216, P = 1.9e-216
 Identities = 445/796 (55%), Positives = 555/796 (69%)

Query:     1 MQAADQTVISLXXXXXXXXXXTRLF--THRFXXXXXXXXXXQTLP---PHGGV-ASAF-- 52
             MQ  DQTV+SL           RLF  +               LP   PHGG  AS+F  
Sbjct:     1 MQQGDQTVLSLRPGGGRG---NRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPF 57

Query:    53 KMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWG-GRAENNN 111
             K GD RF+G ERV+YTREQLL+LKE  QL+++IL++++E  +E  GE  +W  G +  +N
Sbjct:    58 KGGDSRFDGRERVKYTREQLLELKETTQLSDEILRVQRETAAELFGEEGTWARGESVVSN 117

Query:   112 LQS-QFQARYLEADNRDWRTRSTT---SGQEKSL----EANQEK-MEFGAH--EGQLNSQ 160
             L   Q  +R+ E D+RDWR+RST    SG+E+S     EA   + +E   +  + Q NSQ
Sbjct:   118 LVPVQSASRFSEPDSRDWRSRSTQPPPSGEERSWDNLREAKDSRYVEASQYNRQDQPNSQ 177

Query:   161 FASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQ 220
             F+ A IS+NQG GPAP L+KAEVPWSARRGNLSE DRVLKTVKGILNKLTPEK+D+LKGQ
Sbjct:   178 FSRANISSNQGGGPAPVLVKAEVPWSARRGNLSENDRVLKTVKGILNKLTPEKYDLLKGQ 237

Query:   221 LIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFK 280
             LI+SGIT+ DILKGVI LIFDKAVLEPTFCPMYA LCSD+N++LP FP  EPG K+ITFK
Sbjct:   238 LIESGITSADILKGVITLIFDKAVLEPTFCPMYAKLCSDINDQLPTFPPAEPGDKEITFK 297

Query:   281 RILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMV 340
             R+LLN CQEAFEGA   R E+RQM+AP+QE ER D+E+L+KL+TLGNIRLIGELLKQKMV
Sbjct:   298 RVLLNICQEAFEGASQLREELRQMSAPDQEAERNDKEKLLKLKTLGNIRLIGELLKQKMV 357

Query:   341 PEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKEL 400
             PEKIVHHIVQELL  D K CPAEENVEAIC FF TIGKQLD N KS+R+NDVYF RL+ L
Sbjct:   358 PEKIVHHIVQELLGADEKVCPAEENVEAICHFFKTIGKQLDGNVKSKRINDVYFKRLQAL 417

Query:   401 TTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAXXXX 460
             + N QL  RLRFM+ +++D+R+N WVPRREEMKA+TITEIH+EAEKNLGLRPGATA    
Sbjct:   418 SKNPQLELRLRFMVQNIIDMRSNGWVPRREEMKARTITEIHTEAEKNLGLRPGATANMRR 477

Query:   461 XXXXXXXXXXXX-XFPIARXXXXXXXXXXXXXXXXXXXXXFDTDNWEVPRSRTMPRGDSK 519
                           +P  R                      D DNWEVPR+R+M R D  
Sbjct:   478 GMVSSGGPVSPGPVYPGGRPGAGGLMPGMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDG- 536

Query:   520 SPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEP 579
                  PG + SP + KS S+N++ LPQGS GI+SGKTSALLQGS + S RP  + S   P
Sbjct:   537 -----PGPLHSPAVSKSASMNTRLLPQGSSGIMSGKTSALLQGSGSVS-RPVTV-SAERP 589

Query:   580 LTQYTXXXXXXXXXXXXXXXXXXXXTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEEL 639
                                       KL+   L++KT SLLEEYF++R+L EALQCVEEL
Sbjct:   590 -----AQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEALQCVEEL 644

Query:   640 RAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDI 699
               P+YHPE VKEAI+L+LEK PP VEP+  LLE+LL+K V+  +D+ TG LLYG++LDDI
Sbjct:   645 GLPSYHPEFVKEAISLSLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDI 704

Query:   700 GIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQ 759
             GIDLPKAPNNFGE+VGKL++A  +DF +++E++ K+ED+ F++ +  AA++ ++SS  G+
Sbjct:   705 GIDLPKAPNNFGEIVGKLILAGGVDFKLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGK 764

Query:   760 EVLAVQGAEVQACESL 775
              +LA Q A+++AC +L
Sbjct:   765 SLLASQAADIEACRNL 780
GO:0003723 "RNA binding" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006412 "translation" evidence=ISS
GO:0006413 "translational initiation" evidence=ISS
GO:0016070 "RNA metabolic process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q1MSJ4 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ3 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ1 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ0 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ2 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2061370 eIFiso4G2 "AT2G24050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131919 AT4G30680 "AT4G30680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081927 EIF4G "AT3G60240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G3N2H3 EIF4G3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q41583IF4G2_WHEATNo assigned EC number0.59090.95100.9390N/Ano
Q84PB3IF4G1_ORYSJNo assigned EC number0.60960.91500.8965yesno
Q93ZT6IF4G1_ARATHNo assigned EC number0.59770.98060.9769yesno
Q03387IF4G1_WHEATNo assigned EC number0.59920.95100.9378N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XVIII0175
hypothetical protein (750 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query777
pfam02854198 pfam02854, MIF4G, MIF4G domain 5e-52
smart00543200 smart00543, MIF4G, Middle domain of eukaryotic ini 1e-46
pfam02847113 pfam02847, MA3, MA3 domain 2e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 5e-28
>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain Back     alignment and domain information 
 Score =  179 bits (456), Expect = 5e-52
 Identities = 80/229 (34%), Positives = 123/229 (53%), Gaps = 34/229 (14%)

Query: 199 LKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCS 258
           LK VKG+LNKL+P  F+ +  +L+   ++  ++LK ++ELIF+KAV EP F P YA LC+
Sbjct: 1   LKKVKGLLNKLSPSNFEKIIDELLKLNMSDKNLLKYILELIFEKAVEEPNFIPAYARLCA 60

Query: 259 DLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQER 318
            LN K P             F  +LLN  QE FE                      ++ER
Sbjct: 61  GLNSKNP------------DFGELLLNRLQEEFEKGVE------------------EEER 90

Query: 319 LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCP-AEENVEAICQFFNTIG 377
             + R LG +R +GEL   K++ EKI+   ++ELLE+  +  P  E ++E +     T G
Sbjct: 91  GNRKRRLGLVRFLGELFNFKVLTEKIILECLKELLESLTEEDPRDEFSLEILLLLLTTCG 150

Query: 378 KQLDENPKSRRVNDVYFSRLKE--LTTNSQLVPRLRFMIHDVLDLRANN 424
           K LD   K +++ D    R+++  L+ + +L  RLRFM+ D+++LR N 
Sbjct: 151 KLLD-REKLKKLMDEILERIQKYLLSADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198
>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 777
KOG0401970 consensus Translation initiation factor 4F, riboso 100.0
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 99.98
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 99.95
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.89
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.89
KOG0403645 consensus Neoplastic transformation suppressor Pdc 99.84
KOG0403 645 consensus Neoplastic transformation suppressor Pdc 99.83
KOG2140739 consensus Uncharacterized conserved protein [Gener 99.81
KOG2141822 consensus Protein involved in high osmolarity sign 99.6
KOG2051 1128 consensus Nonsense-mediated mRNA decay 2 protein [ 98.94
KOG3942348 consensus MIF4G domain-containing protein [Transla 98.68
KOG0401970 consensus Translation initiation factor 4F, riboso 98.19
KOG20511128 consensus Nonsense-mediated mRNA decay 2 protein [ 98.01
KOG1104 759 consensus Nuclear cap-binding complex, subunit NCB 95.43
PF1215275 eIF_4G1: Eukaryotic translation initiation factor 89.92
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 89.27
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 85.78
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 80.83
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-69  Score=653.49  Aligned_cols=759  Identities=30%  Similarity=0.420  Sum_probs=558.8

Q ss_pred             CcCCcc---eeEeccCCCCCCCCCccccccCCCC--CCC--CCCCCCCCCCCCCCc---ccccCCCccCCCcccccCHHH
Q 004043            2 QAADQT---VISLRPGGGGGPRGTRLFTHRFDSS--STP--SSDSQTLPPHGGVAS---AFKMGDLRFEGHERVRYTREQ   71 (777)
Q Consensus         2 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~y~~~~   71 (777)
                      +.+++.   +++++|+|..  ...+.|+.....+  .+.  ++....++.+++.+.   .......++....+..|....
T Consensus       142 ~~~~~s~~~~l~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~  219 (970)
T KOG0401|consen  142 QEGEPSSTKALILKKSGEE--ADDKAFGEPKESSLGEGQADSSTPKTSEDGIPFEKPPDPEEQKASDRMDALTLAFSEEL  219 (970)
T ss_pred             cCCCCCccccccccccccc--ccccccccccccccccccCCCCCcccccccCCCCCCCCcccccccccchhhhhhhhhhh
Confidence            345556   9999999995  3445555553322  221  222222455666433   445567778888899999999


Q ss_pred             HHHHHHHhhhcHHHHHHhhhhhccccCCCCCCCCCCCCCCchhhhhhhhhcccCccccccCCCC--Cccchhhhhhhhhh
Q 004043           72 LLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTS--GQEKSLEANQEKME  149 (777)
Q Consensus        72 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~  149 (777)
                      +++......++.+++..+......+..++.+|.  ...+..+.....|..++.++||..+..+.  ...+.|++.++.+.
T Consensus       220 ~~~~e~~~~~~d~~~~~~e~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  297 (970)
T KOG0401|consen  220 LLEAENTPRSSDEYVRRIEAEQEPLRPEEPSGL--RAIQKIPEKATERRAEESGRDKPEHEDQTKPAGNRLLDEPRESQP  297 (970)
T ss_pred             hhhhhhcCCcchHHHHHHHHHhhccCCccchhh--hcccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            999988889999988888777788889999883  22223456777899999999998776664  33356666666654


Q ss_pred             hcccccc---cchhhhhhhcccCCCCCCccchhcccCCcccccCCCChHHHHHHHHHHhhccCChhhHHHHHHHHHhccC
Q 004043          150 FGAHEGQ---LNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGI  226 (777)
Q Consensus       150 ~~~~~~~---~~~~~~~~~~~~~~~~~p~~~l~~~e~~w~~~~~~~~e~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~i  226 (777)
                      ++++-.+   ....+.........+..|.+...++..+|...+..++..+++.+.|++|||||||++|+.++.+++++.+
T Consensus       298 ~~~~e~~~~~~~~~~~~~~~~~~~~~~ps~k~a~~~~~~~~~~~~~~~~~el~~~vrsilnkltp~~~~~l~~q~~~~~i  377 (970)
T KOG0401|consen  298 AENGEPAKKGVEEVEEVVLNFAQKAPSPSPKRAKSKSDQGAERKDVELKEELAKRVRSLLNKLTPERKELLIEQLIELNV  377 (970)
T ss_pred             ccccccccccchhhhHHHHHhccCCCCCcchhhccccccccccchhHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhhcc
Confidence            4332110   1223333333344556777777888888888777788899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCCCchhhHHHHHHHHHHHHHhhhh-chHHHHhhcC
Q 004043          227 TTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGAD-NTRAEIRQMT  305 (777)
Q Consensus       227 ~t~e~L~~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~~~~~~Fr~~LL~~cQeeFe~~~-~~~~ei~~~~  305 (777)
                      ++.+.|++||.+||||||.||+||.|||+||..|.. ++.++.-+.++..++||++||++||++|+... ...+++....
T Consensus       378 ~t~~~l~~vi~~vfdkAi~EP~f~~~yA~lc~~l~~-~~~~~~~~~~~~~~~fr~~lL~rcq~~fe~~~~~~~~~~~~~~  456 (970)
T KOG0401|consen  378 DTDDALKEVIELVFDKAINEPTFCAMYARLCFDLEG-PPSEPELDMGGDEINFRRLLLNRCQKEFEGEDDKIADEYSEAE  456 (970)
T ss_pred             CcHHHHhHHHHHHHHhhhcccccchhcchhcccccC-CccCCCcCCCCCcccHHHHHHHHhHHHhhcccHHHHHHhhhhc
Confidence            999999999999999999999999999999999998 55555555566789999999999999999987 6666777776


Q ss_pred             ChHH-HHHHhhHHHHHHhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCC
Q 004043          306 APEQ-EMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENP  384 (777)
Q Consensus       306 ~~e~-E~E~~d~e~~~Krr~lGnIrFIGELyk~~mL~e~Ii~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~  384 (777)
                      .+++ |.++++.++++++|++|||+|||+||+.+|++++|||.||..||..+.   ++|++|||+|+|++|+|+.||...
T Consensus       457 ~~~~~e~~le~~k~~~~~rtlgn~~~ig~l~~~~ml~e~i~~~~v~~Ll~~~~---~~ee~ie~lc~f~~tig~~lD~~~  533 (970)
T KOG0401|consen  457 EPDELEEELEEEKYILRRRTLGNFRFIGELFKLKMLTEKIVHACVQKLLSDDQ---PSEESIECLCRFLTTIGKKLDFSK  533 (970)
T ss_pred             CchhHHHHHHhccceecCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhhhHHhhhhcccccccccC
Confidence            6655 666667778889999999999999999999999999999999998742   799999999999999999999754


Q ss_pred             chhhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhCCCcccccccCcc-cHHHHHHHHHHhcCCCCchhhhhhcCCC
Q 004043          385 KSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAK-TITEIHSEAEKNLGLRPGATAMMRNGRT  463 (777)
Q Consensus       385 k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~nnW~~r~~~~~pk-ti~eI~~eae~~~~~~~~~~~~~r~~r~  463 (777)
                      .....||.||.+++.+...+.+++|+|||+++++|||.++|++|+.+.+++ +|++||.++.+.....++....++..+.
T Consensus       534 ~s~r~md~~~~~~k~~~~~~~~s~r~RfM~~~~idlR~~~w~~rr~~~~~~~~ieei~~~~~~~~~~~p~~~~~~~~~~~  613 (970)
T KOG0401|consen  534 ESPRNMDEYFNSMKNLKRKPQRSNRIRFMLQSVIDLRKSGWGPRRAEETNDKPIEEIAPEAPSANRWSPKSLSKKTEGRL  613 (970)
T ss_pred             cccchhHHHHHHHHHhhhhhhhccchhhhhccccccccccccchhcccCCCCchhhcchhhhhhcccCcccccccccccc
Confidence            443349999999999999999999999999999999999999999988877 9999999999887755655544444432


Q ss_pred             CCC---CC-C----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q 004043          464 GAT---GG-M----GPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSR--TMPRGDSKSPSQFPGRVQSPLI  533 (777)
Q Consensus       464 ~~~---g~-~----~~g~~~~~~~~~gg~~p~~~~~~~~p~~pg~~~d~~~~~~~~--s~~r~~~~~~~~~~~~~~~~~~  533 (777)
                      +..   +. .    .+.+....+...+.|+++++...-+..++.++.++|++....  ...+..+..  +.....+.+..
T Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~e~~~~~~k~~~~~~~~k~~~~--~~~~~~~~~~~  691 (970)
T KOG0401|consen  614 AEESDSGLLGKEVVERKGKSGLRKLTPEMFDKISDPILDIADQSMDEEDGEASKQKGEQGGRKASDE--QHFSSMRAPAL  691 (970)
T ss_pred             cccccccccCccccccccccccccCChhhcccccccccccchhhccccccchhhhcccccccccCcc--ccccccCCccc
Confidence            110   00 0    011122223344555666554444445556677777765332  122211111  00101122222


Q ss_pred             CCCCCCC----CCcCCCCCCCCcCC--CcccccC---CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 004043          534 GKSPSIN----SKFLPQGSGGIISG--KTSALLQ---GSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPV  604 (777)
Q Consensus       534 ~k~~~~n----~~~~p~gs~~~~s~--k~sall~---~~~~p~~r~~~~~~~~~~~~~~~~~~k~~~~~p~~~~~~~~~~  604 (777)
                      ++.....    ....++|+.+....  ..++...   ..+....++++....+     .++-+.+. -.++.+.+.+...
T Consensus       692 ~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-----~~e~~~~~-~~~~~~~~~~~~~  765 (970)
T KOG0401|consen  692 EKVVPSLSSDIDDKRNRGSNGELLSDSYLSARCHEEFENGWSRELPSGKDGER-----EPEMMSPE-YYAAKAAKRAGLG  765 (970)
T ss_pred             cccccccccccccccccCCccccccccccchhhhhhccccccccCCCCccccc-----chhhcCcc-cchhhhhhccCCc
Confidence            2211111    13334444431111  1111111   1111111111111000     00101110 0011112223333


Q ss_pred             C--CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCH
Q 004043          605 T--KLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTT  682 (777)
Q Consensus       605 ~--~~s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~lls~  682 (777)
                      .  ..+.+.+..+++.|++||++..+.+|++.|+++|++|.+|+.+|...|+..|++++..++++++||..|+..+.++.
T Consensus       766 ~v~~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~  845 (970)
T KOG0401|consen  766 LVIALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSI  845 (970)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccH
Confidence            4  78899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChH-HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCchhh
Q 004043          683 RDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFI-VLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEV  761 (777)
Q Consensus       683 ~q~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~-~i~~~~~~~~~~~~~~~~~~a~l~~l~~~~~g~~v  761 (777)
                      +++..||..++..++|+.||+|++|.|+++|++.++..+++++. .+..+...+.+.+++..|+.+++..+...-+..++
T Consensus       846 ~~~~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  925 (970)
T KOG0401|consen  846 ETLEIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESELVREILKNMRPNGRRSNVLFSVLEIVEKELGRADL  925 (970)
T ss_pred             HHHhhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHHHHHHhhcCCccccccchHHHHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999994 56788888999999999999999999988899999


Q ss_pred             HhhhhhhHHHHhhhh
Q 004043          762 LAVQGAEVQACESLL  776 (777)
Q Consensus       762 ~~~~~~~~~~~~~~~  776 (777)
                      .+..+....+|+.++
T Consensus       926 ~~~~~~~~~s~~~~~  940 (970)
T KOG0401|consen  926 GDIQRESFLSTKTLL  940 (970)
T ss_pred             HHHHHHhcccchhcc
Confidence            999999999988764

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification] Back     alignment and domain information
>PF12152 eIF_4G1: Eukaryotic translation initiation factor 4G1; InterPro: IPR022745 The eukaryotic initiation factor 4G (eIF4G) is the core of a multicomponent switch controlling gene expression at the level of translation initiation Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query777
1hu3_A260 Middle Domain Of Human Eif4gii Length = 260 1e-39
2vso_E284 Crystal Structure Of A Translation Initiation Compl 1e-18
1ug3_A 339 C-Terminal Portion Of Human Eif4gi Length = 339 2e-06
3rk6_A234 Crystal Structure Of The Middle Domain Of Human Pai 3e-04
2ion_A152 Crystal Structure Of The C-terminal Ma3 Domain Of P 3e-04
2kzt_B131 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 3e-04
2hm8_A136 Solution Structure Of The C-Terminal Ma-3 Domain Of 3e-04
2nsz_A129 1.15 Angstrom Crystal Structure Of The Ma3 Domain O 3e-04
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 3e-04
2ggf_A137 Solution Structure Of The Ma3 Domain Of Human Progr 4e-04
3eij_A321 Crystal Structure Of Pdcd4 Length = 321 4e-04
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 151/260 (58%), Gaps = 23/260 (8%)
Query: 198 VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLC 257
           + + V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   YA  C
Sbjct: 11  LFRKVRSILNKLTPQXFNQLXKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANXC 70
Query: 258 SDL-NEKLPPFPSDEPGGKDITFKRILLNHCQEAFE--GADN-----TRAEIRQMTAPEQ 309
             L   K+P   +D+PG   + F+++LLN CQ+ FE   AD+      + E+   +APE+
Sbjct: 71  RCLVTLKVP--XADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEE 127
Query: 310 EMERMDQ----ERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEEN 365
                D+    +   + R++GNI+ IGEL K K + E I H  V +LL+N       EE+
Sbjct: 128 RTRLHDELEEAKDKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLLKNHD-----EES 182
Query: 366 VEAICQFFNTIGKQLD-ENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANN 424
           +E +C+   TIGK LD E  K R   D YF++ +++    +   R+RF + DV+DLR  N
Sbjct: 183 LECLCRLLTTIGKDLDFEKAKPR--XDQYFNQXEKIVKERKTSSRIRFXLQDVIDLRLCN 240
Query: 425 WVPRREEMKAKTITEIHSEA 444
           WV RR +   KTI +IH EA
Sbjct: 241 WVSRRADQGPKTIEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284 Back     alignment and structure
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi Length = 339 Back     alignment and structure
>pdb|3RK6|A Chain A, Crystal Structure Of The Middle Domain Of Human Paip1 Length = 234 Back     alignment and structure
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4 (mouse); Form2 Length = 152 Back     alignment and structure
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 131 Back     alignment and structure
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4 Length = 136 Back     alignment and structure
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4 Length = 129 Back     alignment and structure
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed Cell Death 4 Length = 137 Back     alignment and structure
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4 Length = 321 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query777
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 3e-78
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 5e-68
3rk6_A234 Polyadenylate-binding protein-interacting protein; 2e-56
2i2o_A224 EIF4G-like protein; protein structure initiative, 1e-55
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 1e-35
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 8e-34
2zu6_B 307 Programmed cell death protein 4; protein-protein c 1e-32
2zu6_B307 Programmed cell death protein 4; protein-protein c 6e-30
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 1e-32
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 7e-28
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 2e-32
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 4e-31
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 7e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 3e-11
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260 Back     alignment and structure
 Score =  251 bits (642), Expect = 3e-78
 Identities = 96/262 (36%), Positives = 149/262 (56%), Gaps = 19/262 (7%)

Query: 194 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMY 253
           +   + + V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   Y
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAY 66

Query: 254 ALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFE-------GADNTRAEIRQMTA 306
           A +C  L     P       G  + F+++LLN CQ+ FE         +  + E+   +A
Sbjct: 67  ANMCRCLVTLKVPMADKP--GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASA 124

Query: 307 PEQ----EMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPA 362
           PE+      E  + +   + R++GNI+ IGEL K KM+ E I+H  V +LL+N       
Sbjct: 125 PEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN-----HD 179

Query: 363 EENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRA 422
           EE++E +C+   TIGK LD   K++   D YF++++++    +   R+RFM+ DV+DLR 
Sbjct: 180 EESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL 238

Query: 423 NNWVPRREEMKAKTITEIHSEA 444
            NWV RR +   KTI +IH EA
Sbjct: 239 CNWVSRRADQGPKTIEQIHKEA 260
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284 Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234 Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Length = 224 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Length = 248 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query777
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 100.0
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 100.0
3rk6_A234 Polyadenylate-binding protein-interacting protein; 100.0
2i2o_A224 EIF4G-like protein; protein structure initiative, 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 99.97
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 99.97
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 99.97
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 99.95
2zu6_B307 Programmed cell death protein 4; protein-protein c 99.95
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 99.94
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 99.94
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 99.93
2zu6_B 307 Programmed cell death protein 4; protein-protein c 99.93
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 99.7
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 98.87
4gmj_A229 CCR4-NOT transcription complex subunit 1; mRNA dec 95.28
4b89_A249 General negative regulator of transcription subun; 94.89
1rf8_B100 Eukaryotic initiation factor 4F subunit P150; prot 85.58
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 83.51
3hxi_C21 Eukaryotic translation initiation factor 4E- bindi 81.5
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
Probab=100.00  E-value=2.1e-55  Score=463.37  Aligned_cols=241  Identities=40%  Similarity=0.722  Sum_probs=184.0

Q ss_pred             HHHHHHHHHHhhccCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh-hCCCCCCCCCC
Q 004043          195 KDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE-KLPPFPSDEPG  273 (777)
Q Consensus       195 ~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~i~t~e~L~~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~-~lp~~~~~e~~  273 (777)
                      .+++.|+|++|||||||+||+.|+.||+++++.+.+.|++||++||+||+.||+||.|||+||..|+. .+|.+   +..
T Consensus         8 ~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~---~~~   84 (260)
T 1hu3_A            8 TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA---DKP   84 (260)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcc---cCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999998 46543   223


Q ss_pred             CchhhHHHHHHHHHHHHHhhhhchHH-------HHhhcCChHHH--H--HHhhHHHHHHhhhhhHHHHHHHHHhcCCCCH
Q 004043          274 GKDITFKRILLNHCQEAFEGADNTRA-------EIRQMTAPEQE--M--ERMDQERLVKLRTLGNIRLIGELLKQKMVPE  342 (777)
Q Consensus       274 ~~~~~Fr~~LL~~cQeeFe~~~~~~~-------ei~~~~~~e~E--~--E~~d~e~~~Krr~lGnIrFIGELyk~~mL~e  342 (777)
                      +....||++||++||++|++.++...       ++.....+++.  +  |.++.+.+.|+|++|+|+||||||+++||++
T Consensus        85 ~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~  164 (260)
T 1hu3_A           85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE  164 (260)
T ss_dssp             ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred             ccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH
Confidence            35678999999999999999875321       11111111110  0  1111123578999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHh
Q 004043          343 KIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRA  422 (777)
Q Consensus       343 ~Ii~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~  422 (777)
                      +|||+||..||++     |+|++|||+|.||+|||+.|+. ++++..||.||.+|+.++.+.++++|+||||+||+|||+
T Consensus       165 ~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~  238 (260)
T 1hu3_A          165 AIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL  238 (260)
T ss_dssp             HHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999986     7999999999999999999997 345568999999999999999999999999999999999


Q ss_pred             CCCcccccccCcccHHHHHHHH
Q 004043          423 NNWVPRREEMKAKTITEIHSEA  444 (777)
Q Consensus       423 nnW~~r~~~~~pkti~eI~~ea  444 (777)
                      |||++++.+.+||||+|||+||
T Consensus       239 ~~W~~~~~~~~pkti~~i~~ea  260 (260)
T 1hu3_A          239 CNWVSRRADQGPKTIEQIHKEA  260 (260)
T ss_dssp             TTTCC-----------------
T ss_pred             cCCCCCccccCCCcHHHHHhhC
Confidence            9999999999999999999987
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A Back     alignment and structure
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B Back     alignment and structure
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis, translation regulat biosynthetic protein, translation; HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP: a.210.1.1 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 777
d1hu3a_243 a.118.1.14 (A:) Eukaryotic initiation factor eIF4G 1e-66
d1uw4b_248 a.118.1.14 (B:) Regulator of nonsense transcripts 7e-47
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 6e-33
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 1e-31
d1h2vc1262 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin 3e-06
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  218 bits (557), Expect = 1e-66
 Identities = 87/244 (35%), Positives = 139/244 (56%), Gaps = 19/244 (7%)

Query: 194 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMY 253
           +   + + V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   Y
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAY 66

Query: 254 ALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGA-------DNTRAEIRQMTA 306
           A +C  L     P    +  G  + F+++LLN CQ+ FE         +  + E+   +A
Sbjct: 67  ANMCRCLVTLKVPM--ADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASA 124

Query: 307 PEQEM----ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPA 362
           PE+      E  + +   + R++GNI+ IGEL K KM+ E I+H  V +LL+N       
Sbjct: 125 PEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN-----HD 179

Query: 363 EENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRA 422
           EE++E +C+   TIGK LD   K++   D YF++++++    +   R+RFM+ DV+DLR 
Sbjct: 180 EESLECLCRLLTTIGKDLDFE-KAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL 238

Query: 423 NNWV 426
            NWV
Sbjct: 239 CNWV 242
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query777
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 100.0
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 100.0
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.96
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.96
d1h2vc1262 CBP80, 80KDa nuclear cap-binding protein {Human (H 99.17
d1rf8b_100 Eukaryotic initiation factor 4f subunit eIF4g, eIF 86.26
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-44  Score=370.29  Aligned_cols=225  Identities=38%  Similarity=0.694  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHhhccCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCCC
Q 004043          195 KDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGG  274 (777)
Q Consensus       195 ~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~i~t~e~L~~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~~  274 (777)
                      .+++.|+|++||||||++||+.++++|+++++++.+.++.+|+.||+||+.||+|+++||+||..|....+.+.  +..+
T Consensus         8 ~~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~--~~~~   85 (243)
T d1hu3a_           8 TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA--DKPG   85 (243)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHhcCccc--cccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999876653  2234


Q ss_pred             chhhHHHHHHHHHHHHHhhhhchHHHHh-------hcCChHHH----HHHhhHHHHHHhhhhhHHHHHHHHHhcCCCCHH
Q 004043          275 KDITFKRILLNHCQEAFEGADNTRAEIR-------QMTAPEQE----MERMDQERLVKLRTLGNIRLIGELLKQKMVPEK  343 (777)
Q Consensus       275 ~~~~Fr~~LL~~cQeeFe~~~~~~~ei~-------~~~~~e~E----~E~~d~e~~~Krr~lGnIrFIGELyk~~mL~e~  343 (777)
                      +...|++.||++||++|++.........       ....++++    .+..+.+.+.|++.+|+++||||||++++++.+
T Consensus        86 ~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~~~  165 (243)
T d1hu3a_          86 NTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEA  165 (243)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHH
T ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccchHH
Confidence            5678999999999999998753221111       11111110    011111234678999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhC
Q 004043          344 IVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRAN  423 (777)
Q Consensus       344 Ii~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~n  423 (777)
                      +|++|+..|+.+     |+|++|||||.||++||+.|+.. ..+..||.||.+|+.+.++.++++|+||||+||+|||+|
T Consensus       166 ~i~~~l~~Ll~~-----~~e~~ie~l~~lL~~~G~~L~~~-~~~~~~~~~~~~l~~~~~~~~~s~Rirfml~~l~elR~~  239 (243)
T d1hu3a_         166 IMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDFE-KAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLC  239 (243)
T ss_dssp             HHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCCT-TTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHc
Confidence            999999999986     79999999999999999999863 445789999999999999999999999999999999999


Q ss_pred             CCcc
Q 004043          424 NWVP  427 (777)
Q Consensus       424 nW~~  427 (777)
                      ||++
T Consensus       240 ~W~s  243 (243)
T d1hu3a_         240 NWVS  243 (243)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            9984
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rf8b_ a.210.1.1 (B:) Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure